Psyllid ID: psy3862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-
Protein Sequence
MFQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMYFI
Secondary Structure (PSIPRED)
cHHHHcccHHHHHHccccccccccccccccEEEccccccEEEEEEccccccccccccEEEEccccccccHHHHHHHHHcccEEEEEEEccHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEccccccEEEEEEEcccccEEEEEccccccccccccHHHHHHHHHHccccEEEEccccccccEEEEEccccccEEEHHHHHHHHHHHccccEEEccHHHHHHHHHcccccccccEEccccccccccccccEEEEEEcccccccccccEEEEEcccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccEEEEcEEEccEEEEcEEEEEEEEEEccccccccccccEEccccccccHHHHHHHHccccEEEEcccccccccccccEEEEccEEEEEEEEccHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHHHHHHccccEHccccccHcHHHHHHHHHHccccEEEEEcccHHHHHHcHHHHccccccEEEEccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccEEEEEcccccccccHEEHccccHHHHHccHHHHHHccccHHHHHHHHHHccccEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHcHHEEEEEEEcccccEEEEEEEEHHHHcccccccccccccEEEEEEEccccHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHccccEEEEEEEccEEEEEccccHHHHHHHHHHHHHHHccccEEEcccEEccHHHHHHHHHcccEEEEcHHccccccccccEEEEEccEEEEEcccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHcccEEEEcccccccccccccEEccccccHHHccccHHcccccccHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHHHHHccHccHHHHHHHHHccEEEEEEHHcccEEEc
Coil and Loop (DISEMBL)
MFQKFLTAMAQKIINDIKLdfkdvmlrpkrstlksrsevditrtftfrnsgktyqgvpiiaanmdtVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADvikvgigpgsvcttrlknktsdfFLIQFYscipqagnvvtGEMVEELILSGADvikvgigpgsvcttrlktgvgypqfsAVLECADAAHGLGGHIISFLTAMAQKIINDIKLdfkdvmlrpkrstlksrsevditrtftfrnsgktyqgvpiiaanmdtVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAfavqnpdvikhvadggctspgdvAKAMGAGADFVMLGGmfaghdqsggeltnIEYMFFPLvgdmnsylggvvdggctspgdvAKAMGAGADFVMLGGmfaghdqsggeliekdgKKVKLFYGMSSTTAMDKHAGGVAEYraaegktvqvpyrgdvndTVQDILGGLRSACTYVgasklkelprraTFIRCTAQLNNVNDTVQDILGGLRSACTYVgasklkelprraTFIRCTAQLNnvaaegktvqvpyrgdvndTVQDILGGLRSACTYVgasklkelprraTFIRCTAQLNNMYFI
Flexible Loop (DISEMBL)
MFQKFLTAMAQKIindikldfkdvmlrpkrstlksrsevditrtftfrnsgktyqgvPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMlrpkrstlksrsevditrtftfrnsgktyqgvPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEgktvqvpyrgdVNDTVQDILGGLRSACTYVGasklkelprrATFIrctaqlnnvnDTVQDILGGLRSACTYVGasklkelprrATFIRCTAqlnnvaaegktvqvpyrgdVNDTVQDILGGLRSACTYVGasklkelprratFIRCtaqlnnmyfi
Low Complexity Region (SEG)
MFQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMYFI
Disordered region (IsUnstruct)
****FLTAMAQKIINDIKLDFKDVMLR**********EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRP*********EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMYF*
Disordered Region (DISOPRED)
*FQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISF*TAM*QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTT************RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQD*****R**********************CTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL**MYFI
Disordered Region (DISEMBL)
MFQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMYFI
Disordered Region (DISPRO)
MFQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMYFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMYFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	671	2.2.26 [Sep-21-2011]
Q32L93	348	GMP reductase 2 OS=Bos ta	yes	N/A	0.320	0.617	0.578	1e-85
Q9P2T1	348	GMP reductase 2 OS=Homo s	yes	N/A	0.320	0.617	0.582	2e-85
Q99L27	348	GMP reductase 2 OS=Mus mu	yes	N/A	0.320	0.617	0.559	1e-82
Q9DCZ1	345	GMP reductase 1 OS=Mus mu	no	N/A	0.321	0.626	0.546	2e-81
Q9Z244	345	GMP reductase 1 OS=Rattus	no	N/A	0.321	0.626	0.546	3e-81
O16294	358	Probable GMP reductase OS	yes	N/A	0.321	0.603	0.544	8e-81
P36959	345	GMP reductase 1 OS=Homo s	no	N/A	0.321	0.626	0.542	1e-80
P27442	356	GMP reductase OS=Ascaris	N/A	N/A	0.321	0.606	0.544	1e-79
Q9NJD8	364	GMP reductase OS=Onchocer	N/A	N/A	0.320	0.590	0.527	6e-77
B5Y1T3	347	GMP reductase OS=Klebsiel	yes	N/A	0.320	0.619	0.535	6e-76

>sp|Q32L93|GMPR2_BOVIN GMP reductase 2 OS=Bos taurus GN=GMPR2 PE=2 SV=1

 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/268 (57%), Positives = 187/268 (69%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F FRNS + Y G+PIIAANMDTVGTFEM
Sbjct: 4   IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFAFRNSKQMYTGIPIIAANMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+LE+WK FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct: 64  AKVLCKFSLFTAVHKHYSLEQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILNAIPQV 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +Y+CLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 124 KYVCLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 184 SVCTTRKK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVMECADAAHGLKGHIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides. Plays a role in modulating cellular differentiation.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 7EC: .EC: 1EC: .EC: 7

>sp|Q9P2T1|GMPR2_HUMAN GMP reductase 2 OS=Homo sapiens GN=GMPR2 PE=1 SV=1

 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 188/268 (70%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 4   IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct: 64  AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 124 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 184 SVCTTRKK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVMECADAAHGLKGHIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides. Plays a role in modulating cellular differentiation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|Q99L27|GMPR2_MOUSE GMP reductase 2 OS=Mus musculus GN=Gmpr2 PE=2 SV=2

 Score =  308 bits (788), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/268 (55%), Positives = 186/268 (69%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEV++TR+F+FRNS + Y G+P+IAANMDTVGTFEM
Sbjct: 4   IDNDVKLDFKDVLLRPKRSTLKSRSEVELTRSFSFRNSKQMYSGIPVIAANMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           A+ L K  LFT IHK+Y++ +W+ FA QNPD ++ +A SSG  + D   L++IL A+P++
Sbjct: 64  ARVLCKFSLFTAIHKHYSIHQWQEFASQNPDCLECLAASSGSGSADFEQLEQILEAIPQV 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 124 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 184 SVCTTRKK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVMECADAAHGLKGHIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9DCZ1|GMPR1_MOUSE GMP reductase 1 OS=Mus musculus GN=Gmpr PE=2 SV=1

 Score =  304 bits (778), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 185/269 (68%), Gaps = 53/269 (19%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KLDFKDV+LRPKRS+LKSRSEVD+ RTFTFRNS +TY G+PII ANMDTVGTFE
Sbjct: 3   RIDADLKLDFKDVLLRPKRSSLKSRSEVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFE 62

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE 131
           MA  +++H +FT +HK+Y+L++WK FA  +P+ ++HVAVSSG    DL  +  IL A+P+
Sbjct: 63  MAVVMSQHAMFTAVHKHYSLDDWKCFAETHPECLQHVAVSSGSGQNDLERMSRILEAVPQ 122

Query: 132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191
           +++ICLDVANGY++ FV+FV+ +R  +P+H I+AGNVVTGEMVEELILSGAD+IKVG+GP
Sbjct: 123 VKFICLDVANGYSEHFVEFVKLVRSKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGP 182

Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 251
           GSVCTTR K                                                   
Sbjct: 183 GSVCTTRTK--------------------------------------------------- 191

Query: 252 LKTGVGYPQFSAVLECADAAHGLGGHIIS 280
             TGVGYPQ SAV+ECAD+AHGL GHIIS
Sbjct: 192 --TGVGYPQLSAVIECADSAHGLKGHIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9Z244|GMPR1_RAT GMP reductase 1 OS=Rattus norvegicus GN=Gmpr PE=2 SV=1

 Score =  303 bits (776), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 185/269 (68%), Gaps = 53/269 (19%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KLDFKDV+LRPKRS+LKSRSEVD+ RTFTFRNS +TY G+P+I ANMDTVGTFE
Sbjct: 3   RIDADLKLDFKDVLLRPKRSSLKSRSEVDLERTFTFRNSKQTYSGIPVIVANMDTVGTFE 62

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE 131
           MA  +++H +FT IHK+Y+L++WK FA  +P+ ++HVAVSSG    DL  +  IL A+P+
Sbjct: 63  MAVVMSQHAMFTAIHKHYSLDDWKHFAENHPECLQHVAVSSGSGQNDLEKMSLILEAVPQ 122

Query: 132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191
           +++ICLDVANGY++ FV+FV+ +R  +P+H I+AGNVVTGEMVEELILSGAD+IKVG+GP
Sbjct: 123 VKFICLDVANGYSEHFVEFVKLVRSKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGP 182

Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 251
           GSVCTTR K                                                   
Sbjct: 183 GSVCTTRTK--------------------------------------------------- 191

Query: 252 LKTGVGYPQFSAVLECADAAHGLGGHIIS 280
             TGVGYPQ SAV+ECAD+AHGL GHIIS
Sbjct: 192 --TGVGYPQLSAVIECADSAHGLKGHIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|O16294|GMPR_CAEEL Probable GMP reductase OS=Caenorhabditis elegans GN=F32D1.5 PE=3 SV=1

 Score =  301 bits (772), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 183/270 (67%), Gaps = 54/270 (20%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I N+ KLDFKDV+LRPKRSTLKSR++V++ R + FRNS  TY GVP++A+NMDTVGTFE
Sbjct: 3   RIENEPKLDFKDVLLRPKRSTLKSRADVELDREYVFRNSKATYTGVPVVASNMDTVGTFE 62

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVAVSSGISAKDLAGLKEILAALP 130
           MA  L  H +FTTIHK+Y+++EWKAFA   +PD   ++A+SSGIS  D   L  ++  LP
Sbjct: 63  MAAALNNHKIFTTIHKHYSVDEWKAFAASASPDTFNNLAISSGISDNDWTKLNTVITELP 122

Query: 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
           +++YICLDVANGY+++FV+F+RR+RE YPKH I+AGNVVTGEMVEELILSGAD++KVGIG
Sbjct: 123 QLKYICLDVANGYSESFVEFIRRVREAYPKHTIMAGNVVTGEMVEELILSGADIVKVGIG 182

Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 250
           PGSVCTTR K                                                  
Sbjct: 183 PGSVCTTRKK-------------------------------------------------- 192

Query: 251 RLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
               GVGYPQ SAVLECADAAHGL GH++S
Sbjct: 193 ---AGVGYPQLSAVLECADAAHGLNGHVMS 219

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|P36959|GMPR1_HUMAN GMP reductase 1 OS=Homo sapiens GN=GMPR PE=1 SV=1

 Score =  301 bits (772), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 185/269 (68%), Gaps = 53/269 (19%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KLDFKDV+LRPKRS+LKSR+EVD+ RTFTFRNS +TY G+PII ANMDTVGTFE
Sbjct: 3   RIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFE 62

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE 131
           MA  +++H +FT IHK+Y+L++WK FA  +P+ +++VAVSSG    DL  +  IL A+P+
Sbjct: 63  MAAVMSQHSMFTAIHKHYSLDDWKLFATNHPECLQNVAVSSGSGQNDLEKMTSILEAVPQ 122

Query: 132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191
           +++ICLDVANGY++ FV+FV+ +R  +P+H I+AGNVVTGEMVEELILSGAD+IKVG+GP
Sbjct: 123 VKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGP 182

Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 251
           GSVCTTR K                                                   
Sbjct: 183 GSVCTTRTK--------------------------------------------------- 191

Query: 252 LKTGVGYPQFSAVLECADAAHGLGGHIIS 280
             TGVGYPQ SAV+ECAD+AHGL GHIIS
Sbjct: 192 --TGVGYPQLSAVIECADSAHGLKGHIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|P27442|GMPR_ASCSU GMP reductase OS=Ascaris suum PE=2 SV=1

 Score =  298 bits (763), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/272 (54%), Positives = 180/272 (66%), Gaps = 56/272 (20%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  + KLDFKDV+LRPKRSTL+SR+EVD+ R + FRNS KTY GVP++A+NMDTVGTFE
Sbjct: 3   RIEFEPKLDFKDVLLRPKRSTLRSRAEVDLMREYVFRNSKKTYVGVPVVASNMDTVGTFE 62

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ---NPDVIKHVAVSSGISAKDLAGLKEILAA 128
           MA+ LAK  LFTTIHK+Y ++EWKAF  +   NP ++  + +SSGIS  D   L+ +   
Sbjct: 63  MAEVLAKFSLFTTIHKHYQVDEWKAFVQRVDSNPQIMSQIGISSGISTSDFDKLRTVCDM 122

Query: 129 LPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG 188
           +PE+EYICLDVANGY++ FVDF+RR+RE +P H I AGNVVTGEMVEELILSGADV+KVG
Sbjct: 123 IPELEYICLDVANGYSEVFVDFIRRVREQFPTHTIFAGNVVTGEMVEELILSGADVVKVG 182

Query: 189 IGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVC 248
           IGPGSVCTTR K                                                
Sbjct: 183 IGPGSVCTTRKK------------------------------------------------ 194

Query: 249 TTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
                 GVGYPQ SAVLECADA+HGL GH++S
Sbjct: 195 -----AGVGYPQLSAVLECADASHGLNGHVMS 221

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Ascaris suum (taxid: 6253)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9NJD8|GMPR_ONCVO GMP reductase OS=Onchocerca volvulus GN=gmr-1 PE=2 SV=1

 Score =  289 bits (739), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/271 (52%), Positives = 178/271 (65%), Gaps = 56/271 (20%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I N+ KLDFKDV+LRPKRSTLKSR++VD+ R F FRNS K Y G+PI+A+NMDTVGTFE+
Sbjct: 4   IENEPKLDFKDVLLRPKRSTLKSRADVDLVREFVFRNSKKKYVGIPIVASNMDTVGTFEV 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQ---NPDVIKHVAVSSGISAKDLAGLKEILAAL 129
           A+ L+K  LFTTIHK+Y++++W  F  +   N D++  + +SSGIS  D   LK+I   +
Sbjct: 64  AESLSKKRLFTTIHKHYSVDQWMEFVNRISSNQDILSQIGISSGISDYDFTKLKKICGLI 123

Query: 130 PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189
           PE++YICLDVANGY++ FVDF+RR+RE +P+H I AGNVVTGEM EELILSGADV+KVGI
Sbjct: 124 PELQYICLDVANGYSEVFVDFIRRVREEFPRHTIFAGNVVTGEMTEELILSGADVVKVGI 183

Query: 190 GPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 249
           G GSVCTTR K                                                 
Sbjct: 184 GSGSVCTTRKK------------------------------------------------- 194

Query: 250 TRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
                GVGYPQ SAVLECADA+HGL GH++S
Sbjct: 195 ----AGVGYPQLSAVLECADASHGLNGHVMS 221

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Onchocerca volvulus (taxid: 6282)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

>sp|B5Y1T3|GUAC_KLEP3 GMP reductase OS=Klebsiella pneumoniae (strain 342) GN=guaC PE=3 SV=1

 Score =  285 bits (730), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 145/271 (53%), Positives = 182/271 (67%), Gaps = 56/271 (20%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KL FKDV++RPKRSTLKSRS+V++ R FTF++SG+T+ GVPIIAANMDTVGTF 
Sbjct: 2   RIEEDLKLGFKDVLIRPKRSTLKSRSDVELEREFTFKHSGQTWSGVPIIAANMDTVGTFS 61

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ--NPDVIKHVAVSSGISAKDLAGLKEILAAL 129
           MAK LA  G+ T +HK+YT+EEW+AF VQ  + DV+KHV VS+G S  D    ++IL+  
Sbjct: 62  MAKALATFGILTAVHKHYTVEEWQAF-VQGASADVLKHVMVSTGTSDADFEKTQQILSQN 120

Query: 130 PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189
           P+++++C+DVANGY++ FV FV + RE +P+  IIAGNVVTGEM EELILSGAD++KVGI
Sbjct: 121 PQLKFVCIDVANGYSEHFVQFVAKAREAWPQKTIIAGNVVTGEMCEELILSGADIVKVGI 180

Query: 190 GPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 249
           GPGSVCTTR+K                                                 
Sbjct: 181 GPGSVCTTRVK------------------------------------------------- 191

Query: 250 TRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
               TGVGYPQ SAV+ECADAAHGLGG IIS
Sbjct: 192 ----TGVGYPQLSAVIECADAAHGLGGQIIS 218

Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	671
431907149	428	GMP reductase 2 [Pteropus alecto]	0.491	0.771	0.468	1e-96
148709072	309	guanosine monophosphate reductase [Mus m	0.418	0.909	0.568	8e-88
383858337	350	PREDICTED: GMP reductase 1-like [Megachi	0.320	0.614	0.608	2e-87
387540104	366	GMP reductase 2 isoform 1 [Macaca mulatt	0.329	0.603	0.589	2e-85
156547587	348	PREDICTED: GMP reductase 1-like [Nasonia	0.320	0.617	0.585	2e-85
109083144	348	PREDICTED: GMP reductase 2 isoform 7 [Ma	0.320	0.617	0.593	5e-85
380786083	348	GMP reductase 2 isoform 1 [Macaca mulatt	0.320	0.617	0.593	6e-85
410961992	348	PREDICTED: GMP reductase 2 [Felis catus]	0.320	0.617	0.585	1e-84
332373366	345	unknown [Dendroctonus ponderosae]	0.320	0.623	0.589	2e-84
355748251	295	GMP reductase 1 [Macaca fascicularis]	0.418	0.952	0.561	3e-84

>gi|431907149|gb|ELK11215.1| GMP reductase 2 [Pteropus alecto]

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 209/446 (46%), Positives = 261/446 (58%), Gaps = 116/446 (26%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS + Y G+PIIAANMDTVGTFEM
Sbjct: 22  IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQMYTGIPIIAANMDTVGTFEM 81

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L+K  LFT +HK+Y+LE+WK FA QN D +KH+A SSG S+ D   L++IL A+P++
Sbjct: 82  AKVLSKFSLFTAVHKHYSLEQWKVFASQNSDCLKHLAASSGTSSSDFEQLEQILEAIPQV 141

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+                            
Sbjct: 142 KYICLDVANGYSEHFVEFVKDVRKRFPEHTIM---------------------------- 173

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
                                    AGNVVTGEMVEELILSGAD+IKVGIGPGSVCTTR 
Sbjct: 174 -------------------------AGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRK 208

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTL--- 309
           KTGVGYPQ SAV+ECADAAHGL GHI              I + FK +++      L   
Sbjct: 209 KTGVGYPQLSAVMECADAAHGLKGHI--------------ISVRFKGMVVYEAAKHLGFL 254

Query: 310 ---KSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG-LFTTIHKYY 365
              ++  EVD                VP+       VG +++A+ L     LFT      
Sbjct: 255 LGMEALIEVDQD------------SWVPVSFE----VGHWDIAESLGNGCYLFT------ 292

Query: 366 TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNI 425
                         V+  + DGGC  PGDVAKA GAGADFVMLGGM AGH +SGGEL   
Sbjct: 293 --------------VLLTLQDGGCRCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIKR 338

Query: 426 E----YMFFPLVGD--MNSYLGGVVD 445
           +     +F+ +  +  M  Y GGV +
Sbjct: 339 DGKKYKLFYGMSSEMAMKKYAGGVAE 364

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148709072|gb|EDL41018.1| guanosine monophosphate reductase [Mus musculus]

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 174/306 (56%), Positives = 214/306 (69%), Gaps = 25/306 (8%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
           +I  D+KLDFKDV+LRPKRS+LKSRSEVD+ RTFTFRNS +TY G+PII ANMDTVGTFE
Sbjct: 3   RIDADLKLDFKDVLLRPKRSSLKSRSEVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFE 62

Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVA------DGGCTSPGDVAKAMG- 400
           MA  +++H +FT +HK+Y+L++WK FA  +P+ ++H            T P   A   G 
Sbjct: 63  MAVVMSQHAMFTAVHKHYSLDDWKCFAETHPECLQHPTIPVSQQHPSITPPQHPASFAGN 122

Query: 401 ------------AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLV---GDMNSYLGG--V 443
                       +GAD + +G +  G   +    T + Y     V    D    L G  +
Sbjct: 123 VVTGEMVEELILSGADIIKVG-VGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHII 181

Query: 444 VDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK 503
            DGGCT PGDVAKA GAGADFVMLGGMF+GH +  GE+IE++G+K+KLFYGMSS TAM K
Sbjct: 182 SDGGCTCPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSDTAMKK 241

Query: 504 HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 563
           HAGGVAEYRA+EGKTV+VPY+GDV +T+ DILGGLRS CTYVGA+KLKEL RRATFIR T
Sbjct: 242 HAGGVAEYRASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVT 301

Query: 564 AQLNNV 569
            Q N V
Sbjct: 302 QQHNTV 307

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383858337|ref|XP_003704658.1| PREDICTED: GMP reductase 1-like [Megachile rotundata]

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/268 (60%), Positives = 189/268 (70%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           IINDIKLDFKDV+LRPKRSTLKSRSEVD+ R  TFRNS +TY+G+P++A+NMDTVGTFEM
Sbjct: 4   IINDIKLDFKDVLLRPKRSTLKSRSEVDLYREITFRNSKRTYKGIPVMASNMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           A+ L+KHGLFTT+HKYYT EEWK FA+QN D +K+VA SSG   +D   L  +LAA+PE+
Sbjct: 64  ARALSKHGLFTTVHKYYTAEEWKDFAMQNSDCLKNVAASSGTGKEDFERLSSVLAAVPEL 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
            +ICLDVANGY+Q FV++VR++R  YP H IIAGNVVTGEMVEELILSGADVIKVGIGPG
Sbjct: 124 SFICLDVANGYSQHFVEYVRKVRSEYPNHTIIAGNVVTGEMVEELILSGADVIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR+K                                                    
Sbjct: 184 SVCTTRMK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVIECADAAHGLKGHIIS 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387540104|gb|AFJ70679.1| GMP reductase 2 isoform 1 [Macaca mulatta]

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/275 (58%), Positives = 193/275 (70%), Gaps = 54/275 (19%)

Query: 6   LTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD 65
           L+AM   I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMD
Sbjct: 16  LSAMPH-IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYTGVPIIAANMD 74

Query: 66  TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI 125
           TVGTFEMAK L K  LFT +HK+Y+LEEW+ FA QNPD ++H+A SSG  A D   L++I
Sbjct: 75  TVGTFEMAKVLCKFSLFTAVHKHYSLEEWQEFAGQNPDCLEHLAASSGTGASDFEQLEQI 134

Query: 126 LAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVI 185
           L A+P+++YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+I
Sbjct: 135 LEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADII 194

Query: 186 KVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPG 245
           KVGIGPGSVCTTR K                                             
Sbjct: 195 KVGIGPGSVCTTRKK--------------------------------------------- 209

Query: 246 SVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
                   TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 210 --------TGVGYPQLSAVMECADAAHGLKGHIIS 236

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156547587|ref|XP_001603068.1| PREDICTED: GMP reductase 1-like [Nasonia vitripennis]

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 191/268 (71%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           IINDIKLDFKDV+LRPKRSTLKSRS+VD+ R  TFRNS +TY+G+P++A+NMDTVGTFEM
Sbjct: 4   IINDIKLDFKDVLLRPKRSTLKSRSDVDLFREITFRNSKRTYRGIPVMASNMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           A+ L+KHGLFTT+HKYY+++EWK FA+QNPD ++++A SSG   +D   L  +LAA+PE+
Sbjct: 64  ARALSKHGLFTTMHKYYSVDEWKEFAIQNPDCLQNMAASSGTGNEDFERLLSVLAAVPEL 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
            +IC+DVANGY+Q FV++VR++R  +P H IIAGNVVTGEMVEELILSGADVIKVGIGPG
Sbjct: 124 SFICIDVANGYSQHFVEYVRKVRLQFPSHTIIAGNVVTGEMVEELILSGADVIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR+K                                                    
Sbjct: 184 SVCTTRMK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVIECADAAHGLKGHIIS 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|109083144|ref|XP_001113269.1| PREDICTED: GMP reductase 2 isoform 7 [Macaca mulatta] gi|109083146|ref|XP_001113297.1| PREDICTED: GMP reductase 2 isoform 8 [Macaca mulatta] gi|109083148|ref|XP_001113331.1| PREDICTED: GMP reductase 2 isoform 9 [Macaca mulatta]

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/268 (59%), Positives = 189/268 (70%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 4   IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYTGVPIIAANMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+LEEW+ FA QNPD ++H+A SSG  A D   L++IL A+P++
Sbjct: 64  AKVLCKFSLFTAVHKHYSLEEWQEFAGQNPDCLEHLAASSGTGASDFEQLEQILEAIPQV 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 124 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 184 SVCTTRKK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVMECADAAHGLKGHIIS 218

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380786083|gb|AFE64917.1| GMP reductase 2 isoform 1 [Macaca mulatta]

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 159/268 (59%), Positives = 189/268 (70%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 4   IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYTGVPIIAANMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+LEEW+ FA QNPD ++H+A SSG  A D   L++IL A+P++
Sbjct: 64  AKVLCKFSLFTAVHKHYSLEEWQEFAGQNPDCLEHLAASSGTGASDFEQLEQILEAVPQV 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 124 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 184 SVCTTRKK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVMECADAAHGLKGHIIS 218

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410961992|ref|XP_003987562.1| PREDICTED: GMP reductase 2 [Felis catus]

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 189/268 (70%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS + Y G+PIIAANMDTVGTFEM
Sbjct: 4   IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQMYTGIPIIAANMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+LE+WK FA QNPD ++H+A SSG+ + D   L++IL A+P++
Sbjct: 64  AKVLCKFSLFTAVHKHYSLEQWKDFASQNPDCLQHLAASSGMGSSDFEQLEQILEAVPQV 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +PKH I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 124 KYICLDVANGYSEHFVEFVKDVRKRFPKHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 184 SVCTTRKK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 192 -TGVGYPQLSAVMECADAAHGLKGHIIS 218

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332373366|gb|AEE61824.1| unknown [Dendroctonus ponderosae]

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/268 (58%), Positives = 188/268 (70%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           IIN+IKLDFKDV+LRPKRSTL+SRS+V++ R  TFRNS + Y G+P++A+NMDTVGTFEM
Sbjct: 4   IINEIKLDFKDVLLRPKRSTLRSRSDVNLHRHITFRNSKQDYNGIPVMASNMDTVGTFEM 63

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L+KHGLFT IHKYY+ E+WK FA  NPDVI +VA SSGI+  D + L EILAA+P I
Sbjct: 64  AKALSKHGLFTCIHKYYSAEDWKLFASDNPDVISNVAASSGIAQNDYSRLVEILAAVPAI 123

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +++CLDVANGYTQ FVD+VR++R  +P H IIAGNVVTGEMVEELILSGAD++KVGIGPG
Sbjct: 124 KFVCLDVANGYTQFFVDYVRKVRAAFPTHTIIAGNVVTGEMVEELILSGADIVKVGIGPG 183

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR+K                                                    
Sbjct: 184 SVCTTRMK---------------------------------------------------- 191

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHII+
Sbjct: 192 -TGVGYPQLSAVIECADAAHGLQGHIIA 218

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|355748251|gb|EHH52734.1| GMP reductase 1 [Macaca fascicularis]

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/292 (56%), Positives = 207/292 (70%), Gaps = 11/292 (3%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
           +I  D+KLDFKDV+LRPKRS+LKSR+EVD+ RTFTFRNS +TY G+PII ANMDTVGTFE
Sbjct: 3   RIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFE 62

Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGA-----G 402
           MA  +++H +FT IHK+Y+L++WK FA  +P+ ++HVA    +   D+ K          
Sbjct: 63  MAAVMSQHSMFTAIHKHYSLDDWKLFATNHPECLQHVAVSSGSGQNDLEKMTSVLKAVPQ 122

Query: 403 ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDM--NSYLGGVVDGGCTSPGDVAKA--- 457
             F+ L  +  G+ +   E   +    FP    M  N   G +V+    S  D+ K    
Sbjct: 123 VKFICLD-VANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVG 181

Query: 458 MGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGK 517
            GAGADFVMLGGMF+GH +  GE+IE++G+K+KLFYGMSS TAM KHAGGVAEYRA+EGK
Sbjct: 182 PGAGADFVMLGGMFSGHTECAGEVIERNGRKLKLFYGMSSDTAMKKHAGGVAEYRASEGK 241

Query: 518 TVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNV 569
           TV+VPY+GDV +T+ DILGGLRS CTYVGA+KLKEL RRATFIR T Q N V
Sbjct: 242 TVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTV 293

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	671
UNIPROTKB|P60560	347	guaC "GuaC" [Escherichia coli	0.280	0.541	0.607	9.1e-109
UNIPROTKB|H0YNJ6	427	GMPR2 "GMP reductase" [Homo sa	0.354	0.557	0.599	6.4e-108
UNIPROTKB|Q6PKC0	409	GMPR2 "GMP reductase" [Homo sa	0.345	0.567	0.604	1.7e-107
UNIPROTKB|H0YLV5	333	GMPR2 "GMP reductase 2" [Homo	0.287	0.579	0.55	2.3e-93
UNIPROTKB|H0YMB3	315	GMPR2 "GMP reductase 2" [Homo	0.287	0.612	0.55	6.2e-93
ZFIN|ZDB-GENE-050522-48	345	gmpr "guanosine monophosphate	0.275	0.536	0.718	2.4e-91
UNIPROTKB|Q9P2T1	348	GMPR2 "GMP reductase 2" [Homo	0.345	0.666	0.604	3.8e-91
UNIPROTKB|E2RBW1	348	GMPR2 "GMP reductase" [Canis l	0.345	0.666	0.6	6.2e-91
UNIPROTKB|F1SGN8	348	GMPR2 "Uncharacterized protein	0.345	0.666	0.604	1.3e-90
UNIPROTKB|Q32L93	348	GMPR2 "GMP reductase 2" [Bos t	0.345	0.666	0.6	9e-90

UNIPROTKB|P60560 guaC "GuaC" [Escherichia coli K-12 (taxid:83333)]

 Score = 607 (218.7 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
 Identities = 116/191 (60%), Positives = 149/191 (78%)

Query:    12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
             +I  D+KL FKDV++RPKRSTLKSRS+V++ R FTF++SG+++ GVPIIAANMDTVGTF 
Sbjct:     2 RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFS 61

Query:    72 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP--DVIKHVAVSSGISAKDLAGLKEILAAL 129
             MA  LA   + T +HK+Y++EEW+AF + N   DV+KHV VS+G S  D    K+IL   
Sbjct:    62 MASALASFDILTAVHKHYSVEEWQAF-INNSSADVLKHVMVSTGTSDADFEKTKQILDLN 120

Query:   130 PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189
             P + ++C+DVANGY++ FV FV + RE +P   I AGNVVTGEM EELILSGAD++KVGI
Sbjct:   121 PALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI 180

Query:   190 GPGSVCTTRLK 200
             GPGSVCTTR+K
Sbjct:   181 GPGSVCTTRVK 191

GO:0042802 "identical protein binding" evidence=IDA

GO:0015951 "purine ribonucleotide interconversion" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003920 "GMP reductase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IC

UNIPROTKB|H0YNJ6 GMPR2 "GMP reductase" [Homo sapiens (taxid:9606)]

 Score = 718 (257.8 bits), Expect = 6.4e-108, Sum P(2) = 6.4e-108
 Identities = 145/242 (59%), Positives = 183/242 (75%)

Query:     6 LTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD 65
             L+AM   I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMD
Sbjct:    16 LSAMPH-IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMD 74

Query:    66 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI 125
             TVGTFEMAK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++I
Sbjct:    75 TVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQI 134

Query:   126 LAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVI 185
             L A+P+++YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+I
Sbjct:   135 LEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADII 194

Query:   186 KVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS-GADVIKVGIGP 244
             KVGIGPGSVCTTR K       L     C   A + + G ++ +   S   DV K   G 
Sbjct:   195 KVGIGPGSVCTTRKKTGVGYPQLSAVMECA-DAAHGLKGHIISDGGCSCPGDVAKA-FGA 252

Query:   245 GS 246
             G+
Sbjct:   253 GA 254

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003920 "GMP reductase activity" evidence=IEA

UNIPROTKB|Q6PKC0 GMPR2 "GMP reductase" [Homo sapiens (taxid:9606)]

 Score = 714 (256.4 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
 Identities = 142/235 (60%), Positives = 179/235 (76%)

Query:    13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
             I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct:     4 IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 63

Query:    73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
             AK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct:    64 AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 123

Query:   133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
             +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct:   124 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query:   193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS-GADVIKVGIGPGS 246
             SVCTTR K       L     C   A + + G ++ +   S   DV K   G G+
Sbjct:   184 SVCTTRKKTGVGYPQLSAVMECA-DAAHGLKGHIISDGGCSCPGDVAKA-FGAGA 236

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003920 "GMP reductase activity" evidence=IEA

UNIPROTKB|H0YLV5 GMPR2 "GMP reductase 2" [Homo sapiens (taxid:9606)]

 Score = 519 (187.8 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
 Identities = 110/200 (55%), Positives = 139/200 (69%)

Query:   376 QNPDVIKHVADGGCTSPGD-VAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLV- 433
             Q   +++ +   G    G+ V + + +GAD + +G +  G   +  + T + Y     V 
Sbjct:   130 QLEQILEAIPQAGNVVTGEMVEELILSGADIIKVG-IGPGSVCTTRKKTGVGYPQLSAVM 188

Query:   434 --GDMNSYLGG--VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKV 489
                D    L G  + DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGELIE+DGKK 
Sbjct:   189 ECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKY 248

Query:   490 KLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASK 549
             KLFYGMSS  AM K+AGGVAEYRA+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+K
Sbjct:   249 KLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAK 308

Query:   550 LKELPRRATFIRCTAQLNNV 569
             LKEL RR TFIR T Q+N +
Sbjct:   309 LKELSRRTTFIRVTQQVNPI 328

GO:0003920 "GMP reductase activity" evidence=IEA

GO:0009117 "nucleotide metabolic process" evidence=IEA

UNIPROTKB|H0YMB3 GMPR2 "GMP reductase 2" [Homo sapiens (taxid:9606)]

 Score = 519 (187.8 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 110/200 (55%), Positives = 139/200 (69%)

Query:   376 QNPDVIKHVADGGCTSPGD-VAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLV- 433
             Q   +++ +   G    G+ V + + +GAD + +G +  G   +  + T + Y     V 
Sbjct:   112 QLEQILEAIPQAGNVVTGEMVEELILSGADIIKVG-IGPGSVCTTRKKTGVGYPQLSAVM 170

Query:   434 --GDMNSYLGG--VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKV 489
                D    L G  + DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGELIE+DGKK 
Sbjct:   171 ECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKY 230

Query:   490 KLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASK 549
             KLFYGMSS  AM K+AGGVAEYRA+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+K
Sbjct:   231 KLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAK 290

Query:   550 LKELPRRATFIRCTAQLNNV 569
             LKEL RR TFIR T Q+N +
Sbjct:   291 LKELSRRTTFIRVTQQVNPI 310

GO:0003920 "GMP reductase activity" evidence=IEA

GO:0009117 "nucleotide metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050522-48 gmpr "guanosine monophosphate reductase" [Danio rerio (taxid:7955)]

 Score = 709 (254.6 bits), Expect = 2.4e-91, Sum P(2) = 2.4e-91
 Identities = 133/185 (71%), Positives = 159/185 (85%)

Query:    16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKH 75
             D+KLDFKDV+ RPKRS+LKSRSEVD+ RTFTFRNS +TY G+PIIAANMDT GTFE+A+ 
Sbjct:     7 DLKLDFKDVLFRPKRSSLKSRSEVDLQRTFTFRNSKQTYNGIPIIAANMDTTGTFEIAQV 66

Query:    76 LAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYI 135
             L+KH LFT I K+Y+LEEWK FA  +P+ ++HVA SSG  A DL  L  IL A+P I+YI
Sbjct:    67 LSKHTLFTAIQKHYSLEEWKTFAANHPECLEHVAASSGSGAADLEKLCSILEAIPLIQYI 126

Query:   136 CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195
             CLDVANGY++ FV+FV+R+RE +PKH I+AGNVVTGEMVEELILSGAD+IKVGIGPGSVC
Sbjct:   127 CLDVANGYSEHFVEFVKRVRERFPKHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVC 186

Query:   196 TTRLK 200
             TTR+K
Sbjct:   187 TTRIK 191

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003920 "GMP reductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9P2T1 GMPR2 "GMP reductase 2" [Homo sapiens (taxid:9606)]

 Score = 714 (256.4 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
 Identities = 142/235 (60%), Positives = 179/235 (76%)

Query:    13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
             I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct:     4 IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 63

Query:    73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
             AK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct:    64 AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 123

Query:   133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
             +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct:   124 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query:   193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS-GADVIKVGIGPGS 246
             SVCTTR K       L     C   A + + G ++ +   S   DV K   G G+
Sbjct:   184 SVCTTRKKTGVGYPQLSAVMECA-DAAHGLKGHIISDGGCSCPGDVAKA-FGAGA 236

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003920 "GMP reductase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0043101 "purine-containing compound salvage" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|E2RBW1 GMPR2 "GMP reductase" [Canis lupus familiaris (taxid:9615)]

 Score = 712 (255.7 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 141/235 (60%), Positives = 179/235 (76%)

Query:    13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
             I +DIKLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS + Y G+PIIAANMDTVGTFEM
Sbjct:     4 IDSDIKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQVYTGIPIIAANMDTVGTFEM 63

Query:    73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
             AK L K  LFT +HK+Y+L++WK FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct:    64 AKVLCKFSLFTAVHKHYSLQQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 123

Query:   133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
             +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct:   124 KYICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query:   193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS-GADVIKVGIGPGS 246
             SVCTTR K       L     C   A + + G ++ +   S   DV K   G G+
Sbjct:   184 SVCTTRKKTGVGYPQLSAVMECA-DAAHGLKGHIISDGGCSCPGDVAKA-FGAGA 236

GO:0003920 "GMP reductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009117 "nucleotide metabolic process" evidence=IEA

UNIPROTKB|F1SGN8 GMPR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 717 (257.5 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
 Identities = 142/235 (60%), Positives = 179/235 (76%)

Query:    13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
             I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS + Y G+PIIAANMDTVGTFEM
Sbjct:     4 IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQMYTGIPIIAANMDTVGTFEM 63

Query:    73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
             AK L K  LFT +HK+Y+LE+WK FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct:    64 AKVLCKFSLFTAVHKHYSLEQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILDAIPQV 123

Query:   133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
             +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct:   124 KYICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query:   193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS-GADVIKVGIGPGS 246
             SVCTTR K       L     C   A + + G ++ +   S   DV K   G G+
Sbjct:   184 SVCTTRKKTGVGYPQLSAVMECA-DAAHGLKGHIISDGGCSCPGDVAKA-FGAGA 236

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0003920 "GMP reductase activity" evidence=IEA

UNIPROTKB|Q32L93 GMPR2 "GMP reductase 2" [Bos taurus (taxid:9913)]

 Score = 715 (256.8 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 141/235 (60%), Positives = 178/235 (75%)

Query:    13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
             I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F FRNS + Y G+PIIAANMDTVGTFEM
Sbjct:     4 IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFAFRNSKQMYTGIPIIAANMDTVGTFEM 63

Query:    73 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
             AK L K  LFT +HK+Y+LE+WK FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct:    64 AKVLCKFSLFTAVHKHYSLEQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILNAIPQV 123

Query:   133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
             +Y+CLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct:   124 KYVCLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 183

Query:   193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS-GADVIKVGIGPGS 246
             SVCTTR K       L     C   A + + G ++ +   S   DV K   G G+
Sbjct:   184 SVCTTRKKTGVGYPQLSAVMECA-DAAHGLKGHIISDGGCSCPGDVAKA-FGAGA 236

GO:0003920 "GMP reductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009117 "nucleotide metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8ZBI2	GUAC_YERPE	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B5BLD7	GUAC_SALPK	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B2K4G3	GUAC_YERPB	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B5F7X8	GUAC_SALA4	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
A1JJK8	GUAC_YERE8	1, ., 7, ., 1, ., 7	0.5148	0.3219	0.6224	yes	N/A
Q1C3T0	GUAC_YERPA	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B4TJA0	GUAC_SALHS	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
A8HAF6	GUAC_SHEPA	1, ., 7, ., 1, ., 7	0.5092	0.3204	0.6195	yes	N/A
Q8ZRT5	GUAC_SALTY	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B7LWQ6	GUAC_ESCF3	1, ., 7, ., 1, ., 7	0.5148	0.3219	0.6224	yes	N/A
B1JK64	GUAC_YERPY	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B5Y1T3	GUAC_KLEP3	1, ., 7, ., 1, ., 7	0.5350	0.3204	0.6195	yes	N/A
B5YZD9	GUAC_ECO5E	1, ., 7, ., 1, ., 7	0.5148	0.3219	0.6224	yes	N/A
Q9P2T1	GMPR2_HUMAN	1, ., 7, ., 1, ., 7	0.5820	0.3204	0.6178	yes	N/A
A0KN65	GUAC_AERHH	1, ., 7, ., 1, ., 7	0.5018	0.3204	0.6195	yes	N/A
A8ALJ2	GUAC_CITK8	1, ., 7, ., 1, ., 7	0.5111	0.3219	0.6224	yes	N/A
A4SJY8	GUAC_AERS4	1, ., 7, ., 1, ., 7	0.5055	0.3204	0.6195	yes	N/A
A9MZN3	GUAC_SALPB	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
Q66EJ0	GUAC_YERPS	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
C0Q5K1	GUAC_SALPC	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
Q99L27	GMPR2_MOUSE	1, ., 7, ., 1, ., 7	0.5597	0.3204	0.6178	yes	N/A
B5FI86	GUAC_SALDC	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
A6T4P6	GUAC_KLEP7	1, ., 7, ., 1, ., 7	0.5296	0.3219	0.6224	yes	N/A
B1LG40	GUAC_ECOSM	1, ., 7, ., 1, ., 7	0.5111	0.3219	0.6224	yes	N/A
B4TXJ0	GUAC_SALSV	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B6HZ81	GUAC_ECOSE	1, ., 7, ., 1, ., 7	0.5111	0.3219	0.6224	yes	N/A
Q1CLY8	GUAC_YERPN	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
Q32L93	GMPR2_BOVIN	1, ., 7, ., 1, ., 7	0.5783	0.3204	0.6178	yes	N/A
A7FM52	GUAC_YERP3	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B0TQE1	GUAC_SHEHH	1, ., 7, ., 1, ., 7	0.5167	0.3204	0.6195	yes	N/A
Q5PDH8	GUAC_SALPA	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B5R2N9	GUAC_SALEP	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
B5RH79	GUAC_SALG2	1, ., 7, ., 1, ., 7	0.5185	0.3219	0.6224	yes	N/A
B4SU63	GUAC_SALNS	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
Q1RG92	GUAC_ECOUT	1, ., 7, ., 1, ., 7	0.5111	0.3219	0.6224	yes	N/A
A9R1J4	GUAC_YERPG	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
A4W6K6	GUAC_ENT38	1, ., 7, ., 1, ., 7	0.5259	0.3219	0.6224	yes	N/A
Q3Z5Q5	GUAC_SHISS	1, ., 7, ., 1, ., 7	0.5111	0.3219	0.6224	yes	N/A
A8G9U1	GUAC_SERP5	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A
O16294	GMPR_CAEEL	1, ., 7, ., 1, ., 7	0.5444	0.3219	0.6033	yes	N/A
A4TPS6	GUAC_YERPP	1, ., 7, ., 1, ., 7	0.5222	0.3219	0.6224	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.7.1.7	0.824
3rd Layer	1.7.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	671
PRK05096	346	PRK05096, PRK05096, guanosine 5'-monophosphate oxi	1e-123
TIGR01305	343	TIGR01305, GMP_reduct_1, guanosine monophosphate r	1e-110
PRK05096	346	PRK05096, PRK05096, guanosine 5'-monophosphate oxi	3e-82
TIGR01305	343	TIGR01305, GMP_reduct_1, guanosine monophosphate r	7e-71
cd00381	325	cd00381, IMPDH, IMPDH: The catalytic domain of the	1e-54
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	3e-49
PRK05096	346	PRK05096, PRK05096, guanosine 5'-monophosphate oxi	5e-48
TIGR01305	343	TIGR01305, GMP_reduct_1, guanosine monophosphate r	4e-44
cd00381	325	cd00381, IMPDH, IMPDH: The catalytic domain of the	1e-41
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	8e-41
PRK05458	326	PRK05458, PRK05458, guanosine 5'-monophosphate oxi	2e-30
PRK05096	346	PRK05096, PRK05096, guanosine 5'-monophosphate oxi	6e-28
TIGR01306	321	TIGR01306, GMP_reduct_2, guanosine monophosphate r	2e-26
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	1e-25
TIGR01305	343	TIGR01305, GMP_reduct_1, guanosine monophosphate r	2e-24
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-24
PRK06843	404	PRK06843, PRK06843, inosine 5-monophosphate dehydr	7e-22
TIGR01306	321	TIGR01306, GMP_reduct_2, guanosine monophosphate r	8e-22
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	3e-21
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	4e-21
PRK05458	326	PRK05458, PRK05458, guanosine 5'-monophosphate oxi	1e-20
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	5e-20
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	5e-20
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	5e-20
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	9e-20
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	4e-19
COG0516	170	COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu	6e-18
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	1e-17
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	7e-17
PRK06843	404	PRK06843, PRK06843, inosine 5-monophosphate dehydr	1e-16
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	4e-16
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	7e-15
cd00381	325	cd00381, IMPDH, IMPDH: The catalytic domain of the	1e-13
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-13
cd00381	325	cd00381, IMPDH, IMPDH: The catalytic domain of the	1e-11
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	2e-11
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	2e-09
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	7e-09
COG0516	170	COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu	8e-09
COG0516	170	COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu	2e-08
PRK08649	368	PRK08649, PRK08649, inosine 5-monophosphate dehydr	4e-08
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	5e-08
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	5e-08
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	7e-08
PRK05458	326	PRK05458, PRK05458, guanosine 5'-monophosphate oxi	1e-07
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-07
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	3e-07
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	6e-07
PRK05458	326	PRK05458, PRK05458, guanosine 5'-monophosphate oxi	8e-07
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	8e-07
TIGR01304	369	TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family	1e-05
COG0516	170	COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu	3e-05
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	5e-05
PRK06843	404	PRK06843, PRK06843, inosine 5-monophosphate dehydr	5e-05
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	2e-04
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	2e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	4e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	4e-04
COG0516	170	COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu	4e-04
COG0516	170	COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu	4e-04
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	6e-04
PRK08649	368	PRK08649, PRK08649, inosine 5-monophosphate dehydr	6e-04
PRK08649	368	PRK08649, PRK08649, inosine 5-monophosphate dehydr	7e-04
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	0.001
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	0.001
PRK06843	404	PRK06843, PRK06843, inosine 5-monophosphate dehydr	0.001
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	0.001
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	0.001
TIGR01304	369	TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family	0.002
cd02808	392	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b	0.003

>gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score =  370 bits (952), Expect = e-123
 Identities = 143/270 (52%), Positives = 176/270 (65%), Gaps = 54/270 (20%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KL FKDV++RPKRSTLKSRS+V++ R FTF++SG+++ GVPIIAANMDTVGTFE
Sbjct: 2   RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFE 61

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAF-AVQNPDVIKHVAVSSGISAKDLAGLKEILAALP 130
           MAK LA   + T +HK+Y++EEW AF    + DV+KHV VS+G S  D    K+ILA  P
Sbjct: 62  MAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSP 121

Query: 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
            + +IC+DVANGY++ FV FV + RE +P   I AGNVVTGEMVEELILSGAD++KVGIG
Sbjct: 122 ALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIG 181

Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 250
           PGSVCTTR+K                                                  
Sbjct: 182 PGSVCTTRVK-------------------------------------------------- 191

Query: 251 RLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
              TGVGYPQ SAV+ECADAAHGLGG I+S
Sbjct: 192 ---TGVGYPQLSAVIECADAAHGLGGQIVS 218

Length = 346

>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic

 Score =  336 bits (864), Expect = e-110
 Identities = 153/270 (56%), Positives = 189/270 (70%), Gaps = 54/270 (20%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KLDFKDV+LRPKRSTLKSR++V++ RTFTFRNS +TY GVPIIAANMDTVGTFE
Sbjct: 1   RIEADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFE 60

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVAVSSGISAKDLAGLKEILAALP 130
           MA  L++H +FT IHK+Y+++EWKAFA   +PD +++VAVSSG S  DL  +  IL A+P
Sbjct: 61  MAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVP 120

Query: 131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
           ++++ICLDVANGY++ FV+FV+ +RE +P+H I+AGNVVTGEMVEELILSGAD++KVGIG
Sbjct: 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIG 180

Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 250
           PGSVCTTR K                                                  
Sbjct: 181 PGSVCTTRTK-------------------------------------------------- 190

Query: 251 RLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
              TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 191 ---TGVGYPQLSAVIECADAAHGLKGHIIS 217

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343

>gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score =  263 bits (674), Expect = 3e-82
 Identities = 94/132 (71%), Positives = 109/132 (82%), Gaps = 2/132 (1%)

Query: 440 LGG--VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSS 497
           LGG  V DGGCT PGDVAKA G GADFVMLGGM AGH++SGGE++E++G+K  LFYGMSS
Sbjct: 212 LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271

Query: 498 TTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
            +AM +H GGVAEYRAAEGKTV++P RG V +T +DILGGLRSACTYVGAS+LKEL +R 
Sbjct: 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRT 331

Query: 558 TFIRCTAQLNNV 569
           TFIR   Q N V
Sbjct: 332 TFIRVQEQENRV 343

Length = 346

>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic

 Score =  233 bits (595), Expect = 7e-71
 Identities = 103/132 (78%), Positives = 115/132 (87%), Gaps = 2/132 (1%)

Query: 440 LGGVV--DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSS 497
           L G +  DGGCT PGDVAKA GAGADFVMLGGMFAGH +SGGE+IE++G+K KLFYGMSS
Sbjct: 211 LKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270

Query: 498 TTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
            TAM KHAGGVAEYRA+EGKTV+VPYRGDV +T+ DILGGLRSACTYVGA+KLKEL +RA
Sbjct: 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRA 330

Query: 558 TFIRCTAQLNNV 569
           TFIR T Q N V
Sbjct: 331 TFIRVTQQHNTV 342

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343

>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

 Score =  189 bits (482), Expect = 1e-54
 Identities = 80/264 (30%), Positives = 120/264 (45%), Gaps = 65/264 (24%)

Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
           L F DV+L P  ST+   SEVD++   T   +       P+++A MDTV   EMA  +A+
Sbjct: 2   LTFDDVLLVPGYSTV-LPSEVDLSTKLTKNITLNI----PLVSAPMDTVTESEMAIAMAR 56

Query: 79  HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE--IEYIC 136
            G    IH+  ++EE          V   + V + +  ++    KE   AL E  ++ I 
Sbjct: 57  LGGIGVIHRNMSIEEQAEEV---RKVKGRLLVGAAVGTREDD--KERAEALVEAGVDVIV 111

Query: 137 LDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 196
           +D A+G++   ++ ++ I++ YP   +IAGNVVT E   +LI +GAD +KVGIGPGS+CT
Sbjct: 112 IDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICT 171

Query: 197 TRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGV 256
           TR+                                                      TGV
Sbjct: 172 TRIV-----------------------------------------------------TGV 178

Query: 257 GYPQFSAVLECADAAHGLGGHIIS 280
           G PQ +AV + A AA   G  +I+
Sbjct: 179 GVPQATAVADVAAAARDYGVPVIA 202

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score =  178 bits (455), Expect = 3e-49
 Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 7/128 (5%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+AKA+ AGA  VMLG + AG ++S GE IE++G+K K + GM S  AM+KH
Sbjct: 332 DGGIRYSGDIAKALAAGASAVMLGSLLAGTEESPGEYIERNGRKYKEYRGMGSLGAMEKH 391

Query: 505 AGGVAEY-RA------AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
            G    Y +A       EG   +VPY+G V DT+  +LGGLRS+  YVGA+ LKEL  +A
Sbjct: 392 KGSKDRYFQAGDKKLVPEGVEGRVPYKGSVKDTIHQLLGGLRSSMGYVGAASLKELREKA 451

Query: 558 TFIRCTAQ 565
            F+R T+ 
Sbjct: 452 FFVRVTSA 459

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score =  172 bits (437), Expect = 5e-48
 Identities = 65/111 (58%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
           +I  D+KL FKDV++RPKRSTLKSRS+V++ R FTF++SG+++ GVPIIAANMDTVGTFE
Sbjct: 2   RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFE 61

Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAF-AVQNPDVIKHVADGGCTSPGDVAK 397
           MAK LA   + T +HK+Y++EEW AF    + DV+KHV     TS  D  K
Sbjct: 62  MAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEK 112

Length = 346

>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic

 Score =  161 bits (408), Expect = 4e-44
 Identities = 70/111 (63%), Positives = 91/111 (81%), Gaps = 1/111 (0%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
           +I  D+KLDFKDV+LRPKRSTLKSR++V++ RTFTFRNS +TY GVPIIAANMDTVGTFE
Sbjct: 1   RIEADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFE 60

Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVADGGCTSPGDVAK 397
           MA  L++H +FT IHK+Y+++EWKAFA   +PD +++VA    +S  D+ K
Sbjct: 61  MAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEK 111

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343

>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

 Score =  153 bits (390), Expect = 1e-41
 Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 5/122 (4%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG  + GD+ KA+ AGAD VMLG + AG D+S GE IE +GK+ K + GM S  AM K 
Sbjct: 203 DGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKG 262

Query: 505 AG-----GVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATF 559
            G       A+    EG    VPY+G V D +  ++GGLRS+  Y GA  LKEL  +A F
Sbjct: 263 GGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322

Query: 560 IR 561
           +R
Sbjct: 323 VR 324

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score =  155 bits (393), Expect = 8e-41
 Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 55/174 (31%)

Query: 107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG 166
            V  + G    DL   + ++ A   ++ I +D A+G+++  ++ ++ I++ YP+  +IAG
Sbjct: 213 LVGAAVGTREDDLERAEALVEA--GVDVIVIDSAHGHSEYVLEMIKWIKKKYPELDVIAG 270

Query: 167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEM 226
           NVVT E   ELI +GAD +KVGIGPG                                  
Sbjct: 271 NVVTAEAARELIDAGADAVKVGIGPG---------------------------------- 296

Query: 227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
                              S+CTTR   GVG PQ +AV E ADAA  LG  +I+
Sbjct: 297 -------------------SICTTREVAGVGRPQLTAVYEVADAARKLGVPVIA 331

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score =  122 bits (308), Expect = 2e-30
 Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 12/185 (6%)

Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTF---TFRNSGKTYQGVPIIAANMDTVGTFEMAKH 75
            D++D+ L P +  + SRSE D + T    TF+        +P++ ANM T+   ++A+ 
Sbjct: 5   FDYEDIQLIPNKCIVNSRSECDTSVTLGPRTFK--------LPVVPANMQTIIDEKIAEW 56

Query: 76  LAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYI 135
           LA++G F  +H++   E    F     +     ++S G+   +   + ++ A     EYI
Sbjct: 57  LAENGYFYIMHRFD-PEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYI 115

Query: 136 CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC 195
            +D+A+G++ + ++ ++ I++  P+  +IAGNV T E V EL  +GAD  KVGIGPG VC
Sbjct: 116 TIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC 175

Query: 196 TTRLK 200
            T++K
Sbjct: 176 ITKIK 180

Length = 326

>gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score =  115 bits (289), Expect = 6e-28
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669
           AAEGKTV++P RG V +T +DILGGLRSACTYVGAS+LKEL +R TFIR   Q N ++
Sbjct: 287 AAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVF 344

Length = 346

>gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase, bacterial

 Score =  110 bits (275), Expect = 2e-26
 Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 10/184 (5%)

Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
            D++D+ L P +  + SRSE D + T      GK    +P++ ANM T+   ++A+ LA+
Sbjct: 2   FDYEDIQLIPNKCIVNSRSECDTSVTL-----GKHKFKLPVVPANMQTIIDEKLAEQLAE 56

Query: 79  HGLFTTIHKYYTLEEWKAFA--VQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYIC 136
           +G F  +H++   E    F   +Q   +   ++V  G+ A +   + ++       EYI 
Sbjct: 57  NGYFYIMHRFDE-ESRIPFIKDMQERGLFASISV--GVKACEYEFVTQLAEEALTPEYIT 113

Query: 137 LDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 196
           +D+A+G++ + ++ ++ I+   P   +IAGNV T E V EL  +GAD  KVGIGPG VC 
Sbjct: 114 IDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCI 173

Query: 197 TRLK 200
           T++K
Sbjct: 174 TKIK 177

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 321

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score =  110 bits (278), Expect = 1e-25
 Identities = 40/61 (65%), Positives = 50/61 (81%)

Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277
           AGNVVT E   +L+ +GAD++KVG+GPG++CTTR+ TGVG PQFSAVLECA AA  LG H
Sbjct: 273 AGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332

Query: 278 I 278
           +
Sbjct: 333 V 333

Length = 479

>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic

 Score =  105 bits (262), Expect = 2e-24
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669
           A+EGKTV+VPYRGDV +T+ DILGGLRSACTYVGA+KLKEL +RATFIR T Q N ++
Sbjct: 286 ASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVTQQHNTVF 343

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score =  107 bits (269), Expect = 2e-24
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 11/129 (8%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+AKA+ AGA  VMLG M AG +++ GE+    G+  K + GM S  AM K 
Sbjct: 337 DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSK- 395

Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            G    Y     A  K V      +VPY+G +++ +  ++GGLRS   Y GA+ ++EL  
Sbjct: 396 -GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELRE 454

Query: 556 RATFIRCTA 564
           +A F+R T 
Sbjct: 455 KAEFVRITG 463

Length = 486

>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated

 Score = 98.2 bits (244), Expect = 7e-22
 Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 29/265 (10%)

Query: 9   MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
           M  KI  +  L F DV L P++S++   SEV +    T   S      +P +++ MDTV 
Sbjct: 1   MPNKITKE-ALTFDDVSLIPRKSSVLP-SEVSLKTQLTKNIS----LNIPFLSSAMDTVT 54

Query: 69  TFEMAKHLAKHGLFTTIHKYYTLEEWKAF--AVQNPDVIKHVAVSSGISAKDLAGLKEIL 126
             +MA  +AK G    IHK  ++E  +     V+     K +  +   + +      EI 
Sbjct: 55  ESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKP----EIF 110

Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
            A   +E         + + F +  + +         ++ ++ T E VEEL+ +  D++ 
Sbjct: 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILV 170

Query: 187 VGIGPGSVCTTRL-------KNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIK 239
           +    G   +TR+       K K  +  LI        AGN+VT E   +LI  GAD +K
Sbjct: 171 IDSAHGH--STRIIELVKKIKTKYPNLDLI--------AGNIVTKEAALDLISVGADCLK 220

Query: 240 VGIGPGSVCTTRLKTGVGYPQFSAV 264
           VGIGPGS+CTTR+  GVG PQ +A+
Sbjct: 221 VGIGPGSICTTRIVAGVGVPQITAI 245

Length = 404

>gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase, bacterial

 Score = 96.5 bits (240), Expect = 8e-22
 Identities = 83/326 (25%), Positives = 138/326 (42%), Gaps = 89/326 (27%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMA----- 349
            D++D+ L P +  + SRSE D + T      GK    +P++ ANM T+   ++A     
Sbjct: 2   FDYEDIQLIPNKCIVNSRSECDTSVTL-----GKHKFKLPVVPANMQTIIDEKLAEQLAE 56

Query: 350 -------------------KHLAKHGLFTTIH---------------------KYYTLEE 369
                              K + + GLF +I                      +Y T++ 
Sbjct: 57  NGYFYIMHRFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDI 116

Query: 370 WKAFAVQNPDVIKH---------VADGGCTSPGDVAKAMGAGADFVMLG---------GM 411
               +    ++IKH         V  G   +P  V +   AGAD   +G          +
Sbjct: 117 AHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKI 176

Query: 412 FAGHDQSGGELTNIEY----MFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467
             G    G +L  + +       P++ D          GG  + GD+AK++  GA  VM+
Sbjct: 177 KTGFGTGGWQLAALRWCAKAARKPIIAD----------GGIRTHGDIAKSIRFGASMVMI 226

Query: 468 GGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDV 527
           G +FAGH++S GE +EKDGK  K ++G  S +   K      E++  EGK + V ++G +
Sbjct: 227 GSLFAGHEESPGETVEKDGKLYKEYFG--SASEFQK-----GEHKNVEGKKMFVEHKGSL 279

Query: 528 NDTVQDILGGLRSACTYVGASKLKEL 553
           +DT+ ++   L+S+ +Y G   L  L
Sbjct: 280 SDTLIEMQQDLQSSISYAGGKDLDSL 305

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 321

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 96.9 bits (241), Expect = 3e-21
 Identities = 40/61 (65%), Positives = 51/61 (83%)

Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH 277
           AGNVV+ E V +L+ +GA++IKVG+GPG++CTTR+ TGVG PQFSAVLECA  A  LGGH
Sbjct: 271 AGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGH 330

Query: 278 I 278
           +
Sbjct: 331 V 331

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 96.8 bits (242), Expect = 4e-21
 Identities = 47/117 (40%), Positives = 61/117 (52%), Gaps = 17/117 (14%)

Query: 170 TGEMVEELILSGADVIKVGIGPG-------SVCTTRLKNKTSDFFLIQFYSCIPQAGNVV 222
             E  E L+ +G DV+ V    G        V    +K K  D  +I        AGNV 
Sbjct: 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRV--REIKAKYPDVQII--------AGNVA 278

Query: 223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
           T E    LI +GAD +KVGIGPGS+CTTR+  GVG PQ +A+ + A+AA   G  +I
Sbjct: 279 TAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335

Length = 486

>gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 7/111 (6%)

Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + GD+AK++  GA  VM+G +FAGH++S G+ +E DGK  K ++G    +A +
Sbjct: 205 IADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFG----SASE 260

Query: 503 KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
              G   EY+  EGK + VP++G + DT+ ++   L+S+ +Y G   L  +
Sbjct: 261 FQKG---EYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAI 308

Length = 326

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 93.1 bits (232), Expect = 5e-20
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
          L F DV+L P RS L SRS+VD++     + +      +P+++ANMDTV    MA  +A+
Sbjct: 3  LTFDDVLLLPGRSVLPSRSDVDLST----KLTRNITLNIPLVSANMDTVTESRMAIAMAR 58

Query: 79 HGLFTTIHKYYTLEEWKAF 97
           G    IHK  ++EE    
Sbjct: 59 EGGIGVIHKNMSIEEQAEE 77

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 93.1 bits (232), Expect = 5e-20
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L F DV+L P RS L SRS+VD++     + +      +P+++ANMDTV    MA  +A+
Sbjct: 3   LTFDDVLLLPGRSVLPSRSDVDLST----KLTRNITLNIPLVSANMDTVTESRMAIAMAR 58

Query: 355 HGLFTTIHKYYTLEEWKAF 373
            G    IHK  ++EE    
Sbjct: 59  EGGIGVIHKNMSIEEQAEE 77

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK- 503
           DGG    GD+ KA+ AGAD VMLG + AG  +S GE    +G++ K + GM S  AM K 
Sbjct: 333 DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKG 392

Query: 504 ------HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
                       +    EG    VPY+G V + +  ++GGL+S   YVGA  + EL
Sbjct: 393 SSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDEL 448

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 92.7 bits (231), Expect = 9e-20
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 106 KHVAVSSGISAKDLAGLKEILAALPE--IEYICLDVANGYTQTFVDFVRRIREMYPKHVI 163
             + V + IS +      E  AAL E  ++ + +D + G +   +D +++++  YP   I
Sbjct: 228 GQLLVGAAISTRP--EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDI 285

Query: 164 IAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 199
           IAGNVVT +  + LI +GAD +++G+G GS+C T+ 
Sbjct: 286 IAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQE 321

Length = 495

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 90.4 bits (225), Expect = 4e-19
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + GD+ KA+  GAD VMLG + AG +++ GE   KDG ++K++ GM S  AM 
Sbjct: 348 IADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAML 407

Query: 503 KHAGG------VAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
               G          + A+G +  V  +G V   +  ++ G++    Y+GA  + EL
Sbjct: 408 SKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPEL 464

Length = 495

>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

 Score = 81.5 bits (202), Expect = 6e-18
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 455 AKAMGA-GADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRA 513
           A AM   G   VM G M A  ++S GE +       K   GM S  AM ++   V   + 
Sbjct: 64  AIAMARDGGIGVMHGNMLA--EESPGEYL-----YQK--RGMGSIDAMQRYFSSVLVAQG 114

Query: 514 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND 571
             G       +G +   +  + GGL+S+C Y+G   L  L     F   TA    V++
Sbjct: 115 VSGVV----DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKENVRFEFRTASEGGVHN 168

Length = 170

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 55/172 (31%)

Query: 108 VAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN 167
           V  + G    D    + ++ A   ++ I +D ++G++   +D ++ I++ YP        
Sbjct: 215 VGAAVGTREFDKERAEALVKA--GVDVIVIDSSHGHSIYVIDSIKEIKKTYPD------- 265

Query: 168 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMV 227
                          D+I                                AGNV T E  
Sbjct: 266 --------------LDII--------------------------------AGNVATAEQA 279

Query: 228 EELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
           + LI +GAD ++VGIGPGS+CTTR+  GVG PQ +AV + A+ A   G  +I
Sbjct: 280 KALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVI 331

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 83.4 bits (206), Expect = 7e-17
 Identities = 55/132 (41%), Positives = 74/132 (56%), Gaps = 13/132 (9%)

Query: 440 LGGVV--DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI-EKDGKKVKLFYGMS 496
           LGG V  DGG   P DVA A+ AGA  VM+G  FAG  +S G+L+ ++DG+  K  +GM+
Sbjct: 327 LGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMA 386

Query: 497 STTAMDKHAGGVAEYRAA------EG-KTVQV---PYRGDVNDTVQDILGGLRSACTYVG 546
           S  A+    G    +  A      EG  T ++   P RG V D +  I+ G+RS+CTY G
Sbjct: 387 SKRAVVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAG 446

Query: 547 ASKLKELPRRAT 558
           AS L+E   RA 
Sbjct: 447 ASSLEEFHERAV 458

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated

 Score = 82.0 bits (202), Expect = 1e-16
 Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 12/129 (9%)

Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GDV KA+ AGAD VM+G +FAG  +S  E I  +GKK K + GM S +AM 
Sbjct: 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMK 319

Query: 503 KHAGGVAEY----------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKE 552
           +  G  + Y             EG    VPY G + D +  + GGL S   Y+GA+ + +
Sbjct: 320 R--GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISD 377

Query: 553 LPRRATFIR 561
           L   + F++
Sbjct: 378 LKINSKFVK 386

Length = 404

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 81.1 bits (201), Expect = 4e-16
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 13/131 (9%)

Query: 440 LGGVV--DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL-IEKDGKKVKLFYGMS 496
           LG  V  DGG   P DVA A+ AGA  VM+G  FAG  +S G+L  ++DG+  K  +GM+
Sbjct: 329 LGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMA 388

Query: 497 STTAM-DKHAGGVAEYRA-----AEG-KTVQV---PYRGDVNDTVQDILGGLRSACTYVG 546
           S  A+  + AG  A  RA      EG  T ++   P R  V D +  I  G+RS+CTY G
Sbjct: 389 SARAVAARTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAG 448

Query: 547 ASKLKELPRRA 557
           A  L E   RA
Sbjct: 449 ARTLAEFHERA 459

Length = 479

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 77.3 bits (191), Expect = 7e-15
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+AKA+ AGA  VMLG + AG ++S GE 
Sbjct: 330 IADGGIRYSGDIAKALAAGASAVMLGSLLAGTEESPGEY 368

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L F DV+L P  ST+   SEVD++   T   +       P+++A MDTV   EMA  +A+
Sbjct: 2   LTFDDVLLVPGYSTV-LPSEVDLSTKLTKNITLNI----PLVSAPMDTVTESEMAIAMAR 56

Query: 355 HGLFTTIHKYYTLEE 369
            G    IH+  ++EE
Sbjct: 57  LGGIGVIHRNMSIEE 71

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 613 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664
            EG   +VPY+G V DT+  +LGGLRS+  YVGA+ LKEL  +A F+R T+ 
Sbjct: 408 PEGVEGRVPYKGSVKDTIHQLLGGLRSSMGYVGAASLKELREKAFFVRVTSA 459

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 23/49 (46%), Positives = 30/49 (61%)

Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 660
             EG    VPY+G V D +  ++GGLRS+  Y GA  LKEL  +A F+R
Sbjct: 276 VPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVR 324

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 10/106 (9%)

Query: 100 QNP----DVIKHVAVSSGISAKDLAGLKEILAALPE--IEYICLDVANGYTQTFVDFVRR 153
           +NP    D  K   V +GI+ +D A   E + AL E   + +C+D + GY++     +  
Sbjct: 220 ENPLELLDSSKRYVVGAGINTRDYA---ERVPALVEAGADVLCIDSSEGYSEWQKRTLDW 276

Query: 154 IREMYPKHVII-AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 198
           IRE Y   V + AGNVV  E    L  +GAD +KVGIG GS+C TR
Sbjct: 277 IREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITR 322

Length = 502

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK- 503
           DGG ++ G + KA+  GA  VM+G   AG  ++ GE   +DG +VK + GM S  AM K 
Sbjct: 357 DGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKG 416

Query: 504 ----HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKE 552
               + G  A+ + A+G +  V  +G V   V   +  ++     +GAS L+ 
Sbjct: 417 SDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQS 469

Length = 505

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 58.1 bits (141), Expect = 7e-09
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 123 KEILAALPE--IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILS 180
           KE L  L +  ++ + LD + G +   ++ ++ I++ YP+  +I GNVVT    + LI +
Sbjct: 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA 309

Query: 181 GADVIKVGIGPGSVCTT 197
           G D ++VG+G GS+CTT
Sbjct: 310 GVDGLRVGMGSGSICTT 326

Length = 505

>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN 666
              G       +G +   +  + GGL+S+C Y+G   L  L     F   TA   
Sbjct: 114 GVSGVV----DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKENVRFEFRTASEG 164

Length = 170

>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAH 272
             +V+      ++  +G DV K G+GPG         GV  PQ SA ++    A 
Sbjct: 17  FDDVLLLPAASDVAPAGVDV-KTGLGPG--------IGVNIPQVSAAMDTVTEAR 62

Length = 170

>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated

 Score = 55.2 bits (134), Expect = 4e-08
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 47/263 (17%)

Query: 20  DFKDVMLRPKRSTLKSRSEVDITRT---FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHL 76
              ++ + P R T     +V  +     + F         +PIIA+ MD V + E A  L
Sbjct: 17  GLDEIAIVPSRRTRDP-EDVSTSWQIDAYRFE--------IPIIASPMDAVVSPETAIEL 67

Query: 77  AKHGLFTTIHKYYTLEE-WKAFAVQNPD-VIKHVAVSSGISAKDLAGLKEILAALPEIEY 134
            K G    ++    LE  W  +   +P+ ++  +A      A  L  ++E+ A   + E 
Sbjct: 68  GKLGGLGVLN----LEGLWTRYE--DPEPILDEIASLGKDEATRL--MQELYAEPIKPEL 119

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGP 191
           I                 RI E+    VI+A ++      E+   ++ +G D+  +    
Sbjct: 120 I---------------TERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVI---Q 161

Query: 192 GSVCTTRLKNKTSD-FFLIQFYSCIPQ---AGNVVTGEMVEELILSGADVIKVGIGPGSV 247
           G+V +    +K  +   L +F   +      G  VT      L+ +GA  + VGIGPG+ 
Sbjct: 162 GTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAA 221

Query: 248 CTTRLKTGVGYPQFSAVLECADA 270
           CT+R   G+G P  +A+ + A A
Sbjct: 222 CTSRGVLGIGVPMATAIADVAAA 244

Length = 368

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 55.6 bits (135), Expect = 5e-08
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+AKA+ AGA  VMLG M AG +++ GE+
Sbjct: 335 IADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV 373

Length = 486

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 12/78 (15%)

Query: 218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG-- 275
            GNVVT    + LI +G D ++VG+G GS+CTT+    VG  Q +AV + A  A   G  
Sbjct: 294 GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVP 353

Query: 276 ----------GHIISFLT 283
                     GHI+  LT
Sbjct: 354 VIADGGISNSGHIVKALT 371

Length = 505

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 55.2 bits (134), Expect = 7e-08
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   +VPY+G +++ +  ++GGLRS   Y GA+ ++EL  +A F+R T 
Sbjct: 414 EGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRITG 463

Length = 486

>gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE 426
           +ADGG  + GD+AK++  GA  VM+G +FAGH++S G+   I+
Sbjct: 205 IADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEID 247

Length = 326

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 381 IKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
           +  +ADGG  + GD+ KA+  GAD VMLG + AG +++ GE
Sbjct: 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGE 385

Length = 495

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD-- 502
           DGG      +  A+  GADF+MLG  FA  D+S    +  +G  +K ++G  S  A +  
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQ 417

Query: 503 -KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 561
               GG  +    EG    VPY G + D V   L  +RS     GA  + EL ++A    
Sbjct: 418 RYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITL 477

Query: 562 CTA 564
            ++
Sbjct: 478 VSS 480

Length = 502

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 10  AQKIINDIK--LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV 67
           A ++ N I   L + DV+L P      SR +VD++   T     K     PI+++ MDTV
Sbjct: 7   ADELFNSIPTGLTYDDVILLPGYIDF-SRDDVDLSTRLTRNIRLKI----PIVSSPMDTV 61

Query: 68  GTFEMAKHLAKHGLFTTIHKYYTLEE----------WKAFAVQNPDVIK-HVAVSSGISA 116
              +MA  +A  G    IH   ++EE          ++   + +P V+  +  V+  +  
Sbjct: 62  TEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEI 121

Query: 117 KDLAGLKEIL 126
           K+  G   IL
Sbjct: 122 KEKKGFSSIL 131

Length = 495

>gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 12/82 (14%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTF---TFRNSGKTYQGVPIIAANMDTVGTFEMAKH 351
            D++D+ L P +  + SRSE D + T    TF+        +P++ ANM T+   ++A+ 
Sbjct: 5   FDYEDIQLIPNKCIVNSRSECDTSVTLGPRTFK--------LPVVPANMQTIIDEKIAEW 56

Query: 352 LAKHGLFTTIHKYYTLEEWKAF 373
           LA++G F  +H++   E    F
Sbjct: 57  LAENGYFYIMHRFD-PEARIPF 77

Length = 326

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 51.9 bits (125), Expect = 8e-07
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 286 AQKIINDIK--LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV 343
           A ++ N I   L + DV+L P      SR +VD++   T     K     PI+++ MDTV
Sbjct: 7   ADELFNSIPTGLTYDDVILLPGYIDF-SRDDVDLSTRLTRNIRLKI----PIVSSPMDTV 61

Query: 344 GTFEMAKHLAKHGLFTTIHKYYTLEE 369
              +MA  +A  G    IH   ++EE
Sbjct: 62  TEHKMAIAMALMGGIGVIHNNCSIEE 87

Length = 495

>gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 37/258 (14%)

Query: 21  FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG 80
             D+ + P R T  S+ +VD                +P IA  MD + + E A  L + G
Sbjct: 15  LDDISVVPSRRTRSSK-DVDTAWQI-----DAYRFELPFIAHPMDALVSPEFAIELGELG 68

Query: 81  LFTTIHKYYTLEE-WKAFAVQNPDVIKHVAV-SSGISAKDLAGLKEILAALPEIEYICLD 138
               ++    LE  W      +P + K       G  A     L+E+ AA  + E +   
Sbjct: 69  GLGVLN----LEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLG-- 122

Query: 139 VANGYTQTFVDFVRRIREMYPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGSVC 195
                         RI E+    VI A  V      E+   ++ +GAD++   I    V 
Sbjct: 123 -------------ERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLV--IQGTLVS 167

Query: 196 TTRLKNKTSDFFLIQFYSCIPQ---AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
              +        L +F   +     AG V        L+ +GA    V +GPG   TTRL
Sbjct: 168 AEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGA--AGVIVGPGGANTTRL 225

Query: 253 KTGVGYPQFSAVLECADA 270
             G+  P  +A+ + A A
Sbjct: 226 VLGIEVPMATAIADVAAA 243

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369

>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 197
           +  V +I++  P   +   +V+      ++  +G DV K G+GPG     
Sbjct: 2   LMQVLKIKKARPG--LTFDDVLLLPAASDVAPAGVDV-KTGLGPGIGVNI 48

Length = 170

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 621 PYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 656
           P R  V D +  I  G+RS+CTY GA  L E   RA
Sbjct: 424 PGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERA 459

Length = 479

>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
           +ADGG    GDV KA+ AGAD VM+G +FAG  +S  E
Sbjct: 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297

Length = 404

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 621 PYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRAT 657
           P RG V D +  I+ G+RS+CTY GAS L+E   RA 
Sbjct: 422 PDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAV 458

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 382 KHV-ADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
            HV ADGG   P DVA A+ AGA  VM+G  FAG  +S G+L
Sbjct: 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDL 370

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 43.3 bits (103), Expect = 4e-04
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 19 LDFKDVMLRPKRSTLKSRSEVD----ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAK 74
          L F DV+L P  S +    +VD    +T+             +P+++A MDTV    MA 
Sbjct: 9  LTFDDVLLVPAHSEVLPN-DVDLSTQLTKNIRLN--------IPLLSAAMDTVTEARMAI 59

Query: 75 HLAKHGLFTTIHKYYTLEE 93
           +A+ G    IHK  ++EE
Sbjct: 60 AMAREGGIGVIHKNMSIEE 78

Length = 486

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 43.3 bits (103), Expect = 4e-04
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVD----ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAK 350
           L F DV+L P  S +    +VD    +T+             +P+++A MDTV    MA 
Sbjct: 9   LTFDDVLLVPAHSEVLPN-DVDLSTQLTKNIRLN--------IPLLSAAMDTVTEARMAI 59

Query: 351 HLAKHGLFTTIHKYYTLEE 369
            +A+ G    IHK  ++EE
Sbjct: 60  AMAREGGIGVIHKNMSIEE 78

Length = 486

>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 21 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG 80
          F DV+L P  S +         +T      G     +P ++A MDTV    MA  +A+ G
Sbjct: 17 FDDVLLLPAASDVAPAG--VDVKTGLGPGIGV---NIPQVSAAMDTVTEARMAIAMARDG 71

Query: 81 LFTTIHKYYTLEE 93
              +H     EE
Sbjct: 72 GIGVMHGNMLAEE 84

Length = 170

>gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 297 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG 356
           F DV+L P  S +         +T      G     +P ++A MDTV    MA  +A+ G
Sbjct: 17  FDDVLLLPAASDVAPAG--VDVKTGLGPGIGV---NIPQVSAAMDTVTEARMAIAMARDG 71

Query: 357 LFTTIHKYYTLEE 369
               +H     EE
Sbjct: 72  GIGVMHGNMLAEE 84

Length = 170

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE 421
           +ADGG ++ G + KA+  GA  VM+G   AG  ++ GE
Sbjct: 355 IADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGE 392

Length = 505

>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated

 Score = 42.1 bits (100), Expect = 6e-04
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 30/123 (24%)

Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + GD+AKA+  GAD VMLG   A   ++ G             +GM+      
Sbjct: 260 IADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGR---------GWHWGMA------ 304

Query: 503 KHAGGVAEYRAAEGKTVQVPYRG----------DVNDTVQDILGGLRSACTYVGASKLKE 552
                        G  ++V   G           + D   +++G LR +   +G S LKE
Sbjct: 305 -----APHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKE 359

Query: 553 LPR 555
             +
Sbjct: 360 FQK 362

Length = 368

>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated

 Score = 42.1 bits (100), Expect = 7e-04
 Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 383 HV-ADGGCTSPGDVAKAMGAGADFVMLGGMFA 413
           HV ADGG  + GD+AKA+  GAD VMLG   A
Sbjct: 258 HVIADGGIGTSGDIAKAIACGADAVMLGSPLA 289

Length = 368

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
          L + DV L P RS + SR +VD++   T   +G T   +P++ ANM  V    MA+ +A+
Sbjct: 13 LTYDDVFLVPSRSDVGSRFDVDLS---TADGTGTT---IPLVVANMTAVAGRRMAETVAR 66

Query: 79 HG 80
           G
Sbjct: 67 RG 68

Length = 479

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L + DV L P RS + SR +VD++   T   +G T   +P++ ANM  V    MA+ +A+
Sbjct: 13  LTYDDVFLVPSRSDVGSRFDVDLS---TADGTGTT---IPLVVANMTAVAGRRMAETVAR 66

Query: 355 HG 356
            G
Sbjct: 67  RG 68

Length = 479

>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 344
           M  KI  +  L F DV L P++S++   SEV +    T   S      +P +++ MDTV 
Sbjct: 1   MPNKITKE-ALTFDDVSLIPRKSSVLP-SEVSLKTQLTKNIS----LNIPFLSSAMDTVT 54

Query: 345 TFEMAKHLAKHGLFTTIHKYYTLEEWK 371
             +MA  +AK G    IHK  ++E  +
Sbjct: 55  ESQMAIAIAKEGGIGIIHKNMSIEAQR 81

Length = 404

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
          L F DV+L P    +    +VD++   T          +PI+++ MDTV    MA  +A+
Sbjct: 2  LTFDDVLLLPGFIDV-EPDDVDLSTRITRNIKLN----IPILSSPMDTVTESRMAIAMAR 56

Query: 79 HGLFTTIHKYYTLEE 93
           G    IH+  ++EE
Sbjct: 57 EGGIGVIHRNMSIEE 71

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L F DV+L P    +    +VD++   T          +PI+++ MDTV    MA  +A+
Sbjct: 2   LTFDDVLLLPGFIDV-EPDDVDLSTRITRNIKLN----IPILSSPMDTVTESRMAIAMAR 56

Query: 355 HGLFTTIHKYYTLEE 369
            G    IH+  ++EE
Sbjct: 57  EGGIGVIHRNMSIEE 71

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 439 YLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
           Y+  + DGG  + GD+ KA+  GAD V+LG   A   ++ G            F+  ++ 
Sbjct: 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR---------GYFWPAAAA 305

Query: 499 TAMDKHAGGVAEYRAAEGKTVQVPYRG--DVNDTVQDILGGLRSACTYVGASKLKELPR 555
                           E  T++    G   + D V++  GGL+ A    G + LKE  +
Sbjct: 306 HPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQK 364

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369

>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain

 Score = 40.2 bits (95), Expect = 0.003
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 379 DVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF 412
           D +  +A GG  +  DVAKA+  GAD V +G   
Sbjct: 284 DRVSLIASGGLRTGADVAKALALGADAVGIGTAA 317

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	671
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	100.0
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	100.0
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	100.0
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	100.0
KOG2550|consensus	503		100.0
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	100.0
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	100.0
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	100.0
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	100.0
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	100.0
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	100.0
KOG2550|consensus	503		100.0
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	100.0
PLN02274	505	inosine-5'-monophosphate dehydrogenase	100.0
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	100.0
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	100.0
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	100.0
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	100.0
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	100.0
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	100.0
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	100.0
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	100.0
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	100.0
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	100.0
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	100.0
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	100.0
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	100.0
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	100.0
PLN02274	505	inosine-5'-monophosphate dehydrogenase	100.0
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	100.0
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	100.0
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	100.0
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	100.0
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.94
COG0516	170	GuaB IMP dehydrogenase/GMP reductase [Nucleotide t	99.81
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.62
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	99.61
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	99.6
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.6
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.58
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	99.55
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	99.47
COG0516	170	GuaB IMP dehydrogenase/GMP reductase [Nucleotide t	99.43
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.37
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	99.36
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	99.29
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	99.12
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	98.92
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	98.84
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	98.79
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	98.74
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	98.72
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	98.67
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	98.61
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	98.59
PLN02535	364	glycolate oxidase	98.57
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	98.52
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	98.49
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	98.48
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	98.47
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	98.43
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	98.38
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	98.33
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	98.32
PLN02979	366	glycolate oxidase	98.31
PLN02535	364	glycolate oxidase	98.3
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	98.28
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	98.26
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	98.26
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	98.26
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	98.24
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	98.21
PLN02979	366	glycolate oxidase	98.14
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.02
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	97.96
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	97.94
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	97.94
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	97.88
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	97.87
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	97.74
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	97.74
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	97.72
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	97.71
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	97.66
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	97.63
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	97.6
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.58
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.57
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	97.57
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	97.55
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	97.51
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	97.5
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	97.48
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	97.47
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	97.39
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	97.38
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	97.37
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	97.36
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	97.3
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.29
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.29
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.2
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	97.18
KOG0538|consensus	363		97.18
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	97.13
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.06
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	97.06
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	97.04
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	97.01
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	96.86
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.75
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.74
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	96.73
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	96.71
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	96.7
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	96.6
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	96.6
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.49
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.46
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.43
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	96.4
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.33
PLN02826	409	dihydroorotate dehydrogenase	96.32
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.3
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	96.21
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	96.19
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	96.14
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	96.13
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	96.09
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.08
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	96.03
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	96.03
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	96.03
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.02
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.95
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	95.94
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	95.84
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	95.83
KOG0538|consensus	363		95.69
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	95.65
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	95.65
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.62
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.6
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	95.59
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	95.58
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	95.53
KOG3111|consensus	224		95.47
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.42
PRK02227	238	hypothetical protein; Provisional	95.41
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	95.37
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	95.29
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	95.18
PLN02746	347	hydroxymethylglutaryl-CoA lyase	95.18
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	95.15
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.15
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	95.08
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.03
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.0
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	94.99
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	94.97
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.88
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.83
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	94.79
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	94.75
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	94.75
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.6
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	94.49
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	94.48
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	94.43
PLN02424	332	ketopantoate hydroxymethyltransferase	94.43
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	94.24
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	94.23
PRK00208	250	thiG thiazole synthase; Reviewed	94.06
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	93.98
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	93.92
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.7
PRK14024	241	phosphoribosyl isomerase A; Provisional	93.52
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	93.44
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	93.36
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	93.31
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	93.24
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	93.21
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	93.06
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	93.02
PLN02591	250	tryptophan synthase	92.95
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	92.86
COG0826	347	Collagenase and related proteases [Posttranslation	92.84
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	92.75
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	92.62
PRK07695	201	transcriptional regulator TenI; Provisional	92.6
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	92.59
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	92.57
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	92.56
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	92.55
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.49
PRK14024	241	phosphoribosyl isomerase A; Provisional	92.45
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	92.43
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	92.42
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	92.41
PRK00208	250	thiG thiazole synthase; Reviewed	92.27
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	92.17
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	92.16
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	92.1
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	92.01
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	91.94
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	91.88
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	91.82
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	91.79
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	91.76
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	91.76
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	91.67
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	91.48
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	91.27
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	91.25
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	91.18
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	91.12
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	91.12
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	91.09
PLN02334	229	ribulose-phosphate 3-epimerase	91.04
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	91.01
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	90.88
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	90.78
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	90.54
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	90.52
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	90.32
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	90.2
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	90.17
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	90.13
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	90.12
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	90.12
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	90.06
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	89.97
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	89.9
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	89.84
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	89.81
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	89.74
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	89.71
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	89.69
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	89.55
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	89.39
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	89.34
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	89.29
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	89.18
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.16
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.14
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	88.91
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	88.9
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	88.84
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	88.75
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	88.65
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	88.65
PRK08227	264	autoinducer 2 aldolase; Validated	88.49
PRK04302	223	triosephosphate isomerase; Provisional	88.32
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	87.99
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	87.93
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	87.91
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	87.77
TIGR01334	277	modD putative molybdenum utilization protein ModD.	87.67
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	87.65
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	87.39
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	87.39
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	87.36
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	87.35
PRK14041	467	oxaloacetate decarboxylase; Provisional	87.31
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	87.27
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	87.26
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	87.09
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	87.07
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	86.88
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	86.88
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	86.87
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	86.82
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	86.74
PLN02617	538	imidazole glycerol phosphate synthase hisHF	86.71
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	86.6
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	86.54
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	86.46
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	86.22
PRK06096	284	molybdenum transport protein ModD; Provisional	86.15
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	85.82
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	85.75
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	85.67
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	85.67
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	85.13
PRK08508	279	biotin synthase; Provisional	85.08
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	85.03
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	84.96
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	84.27
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	84.23
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	83.99
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	83.99
PRK06852	304	aldolase; Validated	83.95
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	83.9
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	83.86
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	83.77
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	83.69
PRK08005	210	epimerase; Validated	83.61
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	83.61
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	83.55
PRK04302	223	triosephosphate isomerase; Provisional	83.5
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	83.37
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	83.36
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	83.3
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	83.25
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	83.13
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	83.1
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	82.99
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	82.55
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	82.32
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	82.26
PRK15452	443	putative protease; Provisional	82.24
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	82.21
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	82.17
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	81.88
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	81.74
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	81.32
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	81.16
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	81.13
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	81.03
PRK12331	448	oxaloacetate decarboxylase; Provisional	80.96
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	80.63
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	80.54
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	80.5
TIGR01334	277	modD putative molybdenum utilization protein ModD.	80.09

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=100.00  E-value=1.8e-90  Score=724.49  Aligned_cols=328  Identities=39%  Similarity=0.608  Sum_probs=300.2

Q ss_pred             ceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC
Q psy3862         287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT  366 (671)
Q Consensus       287 ~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~  366 (671)
                      |||++|.+||||||||+|+||+++||+||||+++|+|+||++.|+++||||||||||++++||++|+++|+|++||||++
T Consensus         1 ~~i~~~~~l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~   80 (346)
T PRK05096          1 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYS   80 (346)
T ss_pred             CcccccCCCCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCc-ccccceeeecccChhhH---HHHHH--cCCcEEEEcccccccccccccccccccccccccccccccc
Q psy3862         367 LEEWKAFAVQNP-DVIKHVADGGCTSPGDV---AKAMG--AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL  440 (671)
Q Consensus       367 ~e~~~~~v~~~~-~~~~~v~~~~~~~~~~~---~~l~~--aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~  440 (671)
                      +|+|++|+++.+ +...++..+.+++++|+   ++|++  +|+|+|||| +|||||++++++++.++..||.++      
T Consensus        81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD-~AhGhs~~~i~~ik~ik~~~P~~~------  153 (346)
T PRK05096         81 VEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICID-VANGYSEHFVQFVAKAREAWPDKT------  153 (346)
T ss_pred             HHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEE-CCCCcHHHHHHHHHHHHHhCCCCc------
Confidence            999999998865 55677777888887655   44577  599999999 999999999999999999999884      


Q ss_pred             CceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCC
Q psy3862         441 GGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEG  516 (671)
Q Consensus       441 ~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G  516 (671)
                         |++|||+|+++++ ++++|||+||||+ ||| |+||||++        +|+|+||+||+++|+.++++|   .++||
T Consensus       154 ---vIaGNV~T~e~a~~Li~aGAD~vKVGI-GpG-SiCtTr~v--------tGvG~PQltAV~~~a~~a~~~gvpiIADG  220 (346)
T PRK05096        154 ---ICAGNVVTGEMVEELILSGADIVKVGI-GPG-SVCTTRVK--------TGVGYPQLSAVIECADAAHGLGGQIVSDG  220 (346)
T ss_pred             ---EEEecccCHHHHHHHHHcCCCEEEEcc-cCC-ccccCccc--------cccChhHHHHHHHHHHHHHHcCCCEEecC
Confidence               6899999999999 5699999999996 999 99999875        689999999999999988877   36777


Q ss_pred             ceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccc
Q psy3862         517 KTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASK  591 (671)
Q Consensus       517 ~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s  591 (671)
                      +   |+++|||+|||+     ||||+||||++|+||+++.                         .+| +++|.||||+|
T Consensus       221 G---i~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~-------------------------~~G-~~~K~yrGMgS  271 (346)
T PRK05096        221 G---CTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVE-------------------------ENG-EKFMLFYGMSS  271 (346)
T ss_pred             C---cccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEE-------------------------ECC-EEEEEEecccc
Confidence            5   799999999999     9999999999999999522                         235 57899999999


Q ss_pred             ccccccc-cccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccccccee
Q psy3862         592 LKELPRR-ATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY  669 (671)
Q Consensus       592 ~~a~~~~-~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n~~~  669 (671)
                      ..||+++ ++.+||      ++|||++.+||||||++++|++|+|||||+|+|+|+++|+|||+|++|||||+|+|+||
T Consensus       272 ~~Am~~~~g~~~ry------~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~q~n~~~  344 (346)
T PRK05096        272 ESAMKRHVGGVAEY------RAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVF  344 (346)
T ss_pred             HHHHhhccCccccc------ccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEEChhhcccc
Confidence            9999853 444455      57999999999999999999999999999999999999999999999999999999998

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=100.00  E-value=1.5e-85  Score=687.96  Aligned_cols=327  Identities=44%  Similarity=0.662  Sum_probs=295.9

Q ss_pred             eeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCH
Q psy3862         288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL  367 (671)
Q Consensus       288 ~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~  367 (671)
                      |||+|++||||||||+|+||+++||+||||+++|+|+||++.|+++|||||||||||+++||++|+++|+|++||||+++
T Consensus         1 ~~~~~~~l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~   80 (343)
T TIGR01305         1 RIEADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSV   80 (343)
T ss_pred             CccccCCCCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-CcccccceeeecccChhhH---HHHHHcC--CcEEEEccccccccccccccccccccccccccccccccC
Q psy3862         368 EEWKAFAVQ-NPDVIKHVADGGCTSPGDV---AKAMGAG--ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG  441 (671)
Q Consensus       368 e~~~~~v~~-~~~~~~~v~~~~~~~~~~~---~~l~~aG--~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (671)
                      |+|++|+++ .++...++..+.+++++|+   ++|+++|  +|+|||| +|||||+++++++++++..||.+        
T Consensus        81 e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD-~AhGhs~~~i~~ik~ir~~~p~~--------  151 (343)
T TIGR01305        81 DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLD-VANGYSEHFVEFVKLVREAFPEH--------  151 (343)
T ss_pred             HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEE-CCCCcHHHHHHHHHHHHhhCCCC--------
Confidence            999999987 5676677777888887554   5558885  9999999 99999999999998888887766        


Q ss_pred             ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCc
Q psy3862         442 GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGK  517 (671)
Q Consensus       442 ~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~  517 (671)
                       .|++|||.|++.++ ++++|||+|+||| ||| |+||||.+        .|+|+||++|+.+|+.++..|   ..+||+
T Consensus       152 -~viaGNV~T~e~a~~Li~aGAD~ikVgi-GpG-SicttR~~--------~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG  220 (343)
T TIGR01305       152 -TIMAGNVVTGEMVEELILSGADIVKVGI-GPG-SVCTTRTK--------TGVGYPQLSAVIECADAAHGLKGHIISDGG  220 (343)
T ss_pred             -eEEEecccCHHHHHHHHHcCCCEEEEcc-cCC-CcccCcee--------CCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence             47899999999999 6799999999996 999 99999986        589999999999999887765   245654


Q ss_pred             eEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccc
Q psy3862         518 TVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKL  592 (671)
Q Consensus       518 ~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~  592 (671)
                         |+++|||+||||     ||+|+++||++|+|++.+.                         .+| +++|.||||+|.
T Consensus       221 ---Ir~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~-------------------------~~G-~~~K~yrGMgS~  271 (343)
T TIGR01305       221 ---CTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIE-------------------------RNG-RKFKLFYGMSSD  271 (343)
T ss_pred             ---cCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEe-------------------------ECC-EEEEEEeccchH
Confidence               799999999999     9999999999999999532                         235 578999999999


Q ss_pred             ccccc-ccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccccccee
Q psy3862         593 KELPR-RATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY  669 (671)
Q Consensus       593 ~a~~~-~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n~~~  669 (671)
                      .||++ .++.+||      +.+||++.+||||||++++|++|++||||+|+|+|+.+|+|||+|++|||||+|+|+||
T Consensus       272 ~Am~~~~g~~~ry------~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~~~~~~~  343 (343)
T TIGR01305       272 TAMKKHAGGVAEY------RASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVTQQHNTVF  343 (343)
T ss_pred             HHHhhccCccccc------ccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEECcccccCC
Confidence            99985 3444555      45899999999999999999999999999999999999999999999999999999998

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=100.00  E-value=1.5e-78  Score=645.98  Aligned_cols=321  Identities=29%  Similarity=0.377  Sum_probs=273.6

Q ss_pred             ccCCCceeeeecCCCc-cCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         293 IKLDFKDVMLRPKRST-LKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       293 ~~l~fdDVll~P~rst-~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      .+||||||||+|++|| +.||+||||+|+++    +++++++|||||||||||+++||++|+++||||+||||+++|+|+
T Consensus         1 ~~ltfdDVllvP~~s~v~~s~~dv~~~~~~~----~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~   76 (352)
T PF00478_consen    1 KGLTFDDVLLVPGRSTVLPSRSDVSLSTKLT----RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQA   76 (352)
T ss_dssp             EE--GGGEEEE--SBSSTGGGGG-BEEEESS----TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHH
T ss_pred             CCCccccEEEecCCCCCCCCHhheECccccc----CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHH
Confidence            3799999999999999 66999999998886    689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcccc----------cceeeecccCh---hhHHHHHHcCCcEEEEcccccccccccccccccccccccccccccc
Q psy3862         372 AFAVQNPDVI----------KHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNS  438 (671)
Q Consensus       372 ~~v~~~~~~~----------~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~  438 (671)
                      +++++++...          -.++++.++.+   ++..+|++||+|+|||| ++|||++++++.++.++..||.++    
T Consensus        77 ~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID-~a~g~s~~~~~~ik~ik~~~~~~~----  151 (352)
T PF00478_consen   77 EEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVID-SAHGHSEHVIDMIKKIKKKFPDVP----  151 (352)
T ss_dssp             HHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE--SSTTSHHHHHHHHHHHHHSTTSE----
T ss_pred             HHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEcc-ccCccHHHHHHHHHHHHHhCCCce----
Confidence            9998865431          14566666765   45566789999999999 999999999999999999988774    


Q ss_pred             ccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---cc
Q psy3862         439 YLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AA  514 (671)
Q Consensus       439 ~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~  514 (671)
                           |++|||+|+++++ ++++|||+||||+ ||| |+||||.+        +|+|+||+||+++|+.++.+|.   ++
T Consensus       152 -----viaGNV~T~e~a~~L~~aGad~vkVGi-GpG-siCtTr~v--------~GvG~PQ~tAv~~~a~~a~~~~v~iIA  216 (352)
T PF00478_consen  152 -----VIAGNVVTYEGAKDLIDAGADAVKVGI-GPG-SICTTREV--------TGVGVPQLTAVYECAEAARDYGVPIIA  216 (352)
T ss_dssp             -----EEEEEE-SHHHHHHHHHTT-SEEEESS-SSS-TTBHHHHH--------HSBSCTHHHHHHHHHHHHHCTTSEEEE
T ss_pred             -----EEecccCCHHHHHHHHHcCCCEEEEec-cCC-cccccccc--------cccCCcHHHHHHHHHHHhhhccCceee
Confidence                 6899999999999 6799999999996 999 99999986        6899999999999999988874   45


Q ss_pred             CCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecc
Q psy3862         515 EGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGA  589 (671)
Q Consensus       515 ~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm  589 (671)
                      ||.   |+++|||+|||+     ||||++|||++|+||+.+.                         .+| +++|.||||
T Consensus       217 DGG---i~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~-------------------------~~g-~~~K~yrGM  267 (352)
T PF00478_consen  217 DGG---IRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIY-------------------------IDG-KRYKKYRGM  267 (352)
T ss_dssp             ESS----SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEE-------------------------ETT-EEEEEEEET
T ss_pred             cCC---cCcccceeeeeeecccceeechhhccCcCCCCceEE-------------------------ECC-eEEEEeccc
Confidence            554   799999999999     9999999999999999422                         235 478999999


Q ss_pred             cccccccc-ccccchhccc-cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccccc
Q psy3862         590 SKLKELPR-RATFIRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN  666 (671)
Q Consensus       590 ~s~~a~~~-~~~~~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n  666 (671)
                      +|..||.+ .++.+||+.. ...++|||+++.||||||++++|++|++||||+|+|+|+++|+|||++++|||+|++-+
T Consensus       268 gS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~fvrvs~a~~  346 (352)
T PF00478_consen  268 GSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARFVRVSSAGI  346 (352)
T ss_dssp             TSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEEEEESHHHH
T ss_pred             ccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeEEEEChhhc
Confidence            99999985 5678899765 36789999999999999999999999999999999999999999999999999998865

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=100.00  E-value=7.9e-70  Score=569.11  Aligned_cols=343  Identities=67%  Similarity=1.121  Sum_probs=311.5

Q ss_pred             ccccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCH
Q psy3862          12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL   91 (671)
Q Consensus        12 ~~~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~   91 (671)
                      .|..+.+|+||||+|+|+++++.||++|||+.+|+++.+++.++++||+++||++|++.+||++||+.|+|++||+++++
T Consensus         2 ~i~~~~~l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~   81 (346)
T PRK05096          2 RIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSV   81 (346)
T ss_pred             cccccCCCCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCCH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEecc
Q psy3862          92 EEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVT  170 (671)
Q Consensus        92 Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t  170 (671)
                      |+|.+|+++.+ .....+.+++|+.++|++|+.+|+++.+++|+|++|.+|||+..++++++++|+.||+..+++|    
T Consensus        82 e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaG----  157 (346)
T PRK05096         82 EEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAG----  157 (346)
T ss_pred             HHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEe----
Confidence            99999997654 4455677889999999999999999777899999999999999999999999999997555554    


Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcccc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT  250 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~T  250 (671)
                                                                       ||+|++++++|+++|||+|||||||||+|||
T Consensus       158 -------------------------------------------------NV~T~e~a~~Li~aGAD~vKVGIGpGSiCtT  188 (346)
T PRK05096        158 -------------------------------------------------NVVTGEMVEELILSGADIVKVGIGPGSVCTT  188 (346)
T ss_pred             -------------------------------------------------cccCHHHHHHHHHcCCCEEEEcccCCccccC
Confidence                                                             5555555555555566666999999999999


Q ss_pred             ceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCcee
Q psy3862         251 RLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTY  330 (671)
Q Consensus       251 r~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~  330 (671)
                      |+|+|+|+||+|||++||++|+++|                                                       
T Consensus       189 r~vtGvG~PQltAV~~~a~~a~~~g-------------------------------------------------------  213 (346)
T PRK05096        189 RVKTGVGYPQLSAVIECADAAHGLG-------------------------------------------------------  213 (346)
T ss_pred             ccccccChhHHHHHHHHHHHHHHcC-------------------------------------------------------
Confidence            9999999999999999999999754                                                       


Q ss_pred             eCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcc
Q psy3862         331 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGG  410 (671)
Q Consensus       331 ~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~  410 (671)
                        +||||                                                                         
T Consensus       214 --vpiIA-------------------------------------------------------------------------  218 (346)
T PRK05096        214 --GQIVS-------------------------------------------------------------------------  218 (346)
T ss_pred             --CCEEe-------------------------------------------------------------------------
Confidence              56665                                                                         


Q ss_pred             ccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEE
Q psy3862         411 MFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVK  490 (671)
Q Consensus       411 ~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k  490 (671)
                                                        |||+..+||++|++.+|||+||+|.+.+|+.++|++++..+|+++|
T Consensus       219 ----------------------------------DGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K  264 (346)
T PRK05096        219 ----------------------------------DGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFM  264 (346)
T ss_pred             ----------------------------------cCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEE
Confidence                                              8999999999999999999999999999999999999999999999


Q ss_pred             EeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccc
Q psy3862         491 LFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVN  570 (671)
Q Consensus       491 ~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~  570 (671)
                      .|+||+|..||.+..+..++|+.++|..+.++|.|++.+.+..|+|+++++++|+|+..++|++.+++|+.++.+.|.++
T Consensus       265 ~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~q~n~~~  344 (346)
T PRK05096        265 LFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVF  344 (346)
T ss_pred             EEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEEChhhcccc
Confidence            99999999999876677889988999999999999999999999999999999999999999999999999998877554


Q ss_pred             c
Q psy3862         571 D  571 (671)
Q Consensus       571 ~  571 (671)
                      +
T Consensus       345 ~  345 (346)
T PRK05096        345 N  345 (346)
T ss_pred             c
Confidence            3

>KOG2550|consensus

Probab=100.00  E-value=7.6e-71  Score=578.04  Aligned_cols=325  Identities=23%  Similarity=0.267  Sum_probs=288.3

Q ss_pred             eccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHH
Q psy3862         290 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE  369 (671)
Q Consensus       290 ~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~  369 (671)
                      .+..+|||+||||+|+++++.+ +||||+++|+|    ++.+++|+||||||||||++||++||.+||+|+||+||+||+
T Consensus        25 ~~~~~LtynDfliLPg~idF~s-~eVsL~t~ltr----~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~   99 (503)
T KOG2550|consen   25 DSKIGLTYNDFLILPGFIDFAS-DEVSLQTKLTR----NITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPED   99 (503)
T ss_pred             hcccCccccceeeccccccccc-ccceeehhhhh----cccccCceeccCCcccchhHHHHHHHhcCCceeeecCCCHHH
Confidence            3455899999999999999999 59999999996    567889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccc-------------------------------cc------------------------------------
Q psy3862         370 WKAFAVQNPDV-------------------------------IK------------------------------------  382 (671)
Q Consensus       370 ~~~~v~~~~~~-------------------------------~~------------------------------------  382 (671)
                      |++++++++..                               ++                                    
T Consensus       100 QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~  179 (503)
T KOG2550|consen  100 QADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTK  179 (503)
T ss_pred             HHHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhccc
Confidence            99999875221                               00                                    


Q ss_pred             -------------------------------------------------------------ceeeecccCh---hhHHHH
Q psy3862         383 -------------------------------------------------------------HVADGGCTSP---GDVAKA  398 (671)
Q Consensus       383 -------------------------------------------------------------~v~~~~~~~~---~~~~~l  398 (671)
                                                                                   .+.++.++.+   ++++.|
T Consensus       180 ~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll  259 (503)
T KOG2550|consen  180 NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLL  259 (503)
T ss_pred             ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHh
Confidence                                                                         1235566665   345666


Q ss_pred             HHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccC
Q psy3862         399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQS  477 (671)
Q Consensus       399 ~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~c  477 (671)
                      ++||+|++|+| +++|+|.++++++++++..||.++         |+||||+|.++++ ++++|||+++|| ||+| |+|
T Consensus       260 ~~aGvdvviLD-SSqGnS~~qiemik~iK~~yP~l~---------ViaGNVVT~~qa~nLI~aGaDgLrVG-MGsG-SiC  327 (503)
T KOG2550|consen  260 VQAGVDVVILD-SSQGNSIYQLEMIKYIKETYPDLQ---------IIAGNVVTKEQAANLIAAGADGLRVG-MGSG-SIC  327 (503)
T ss_pred             hhcCCcEEEEe-cCCCcchhHHHHHHHHHhhCCCce---------eeccceeeHHHHHHHHHccCceeEec-cccC-cee
Confidence            89999999999 999999999999999999999996         7899999999998 689999999999 6999 999


Q ss_pred             CCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccc
Q psy3862         478 GGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASK  549 (671)
Q Consensus       478 tt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~  549 (671)
                      +|+.++        ++|+||.||+++|+..+.++.   .+||+   |++.|||+|||+     ||||++|||++|+||++
T Consensus       328 iTqevm--------a~GrpQ~TAVy~va~~A~q~gvpviADGG---iq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGey  396 (503)
T KOG2550|consen  328 ITQKVM--------ACGRPQGTAVYKVAEFANQFGVPCIADGG---IQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEY  396 (503)
T ss_pred             eeceee--------eccCCcccchhhHHHHHHhcCCceeecCC---cCccchhHhhhhcCchhheecceeeeeeccCcce
Confidence            999974        799999999999988776653   45554   799999999999     99999999999999996


Q ss_pred             ccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEecccccCHHH
Q psy3862         550 LKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQVPYRGDVND  628 (671)
Q Consensus       550 i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~  628 (671)
                               |                +.+| +++|+||||+|++||+ ..+..||+.+. +++++||+++.|+||||++.
T Consensus       397 ---------f----------------~~~g-~rlKkyrGMGSl~AM~-~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~k  449 (503)
T KOG2550|consen  397 ---------F----------------FRDG-VRLKKYRGMGSLDAME-SSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQK  449 (503)
T ss_pred             ---------e----------------eecC-eeehhccCcchHHHHh-hhhhhccccccceEeeccCcEEEeccCcchhh
Confidence                     3                2345 5789999999999999 66778999865 67999999999999999999


Q ss_pred             HHHHHHHHHhhhccccCcccccccccccEEEEeccccccee
Q psy3862         629 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY  669 (671)
Q Consensus       629 ~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q~n~~~  669 (671)
                      +|+++++||||+|+|+|+++|++|+++.+|.+++.+.|+++
T Consensus       450 fipyl~~giqh~cqdiGa~sL~~l~~~~~~~~vrfe~rt~~  490 (503)
T KOG2550|consen  450 FIPYLLAGIQHSCQDIGARSLKELREMMYSGEVRFEKRTMS  490 (503)
T ss_pred             hHHHHHHHHhhhhhhhhHHHHHHHHHHhhcceEEEEecccc
Confidence            99999999999999999999999999999999999999986

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=100.00  E-value=6.5e-66  Score=540.00  Aligned_cols=337  Identities=74%  Similarity=1.207  Sum_probs=307.7

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      .+.+|+||||+|+|+++++.||++|||+++|++|.++.+++++||+++||+++++.+||++||+.|+|++||+|+++|+|
T Consensus         4 ~~~~l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~   83 (343)
T TIGR01305         4 ADLKLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEW   83 (343)
T ss_pred             ccCCCCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhc-CcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHH
Q psy3862          95 KAFAVQ-NPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEM  173 (671)
Q Consensus        95 ~~~i~~-~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~  173 (671)
                      .+|+++ .++....+.+++|+.++|++|+++|+++.+++|+|++|.+|||+..+++.++++|+.+|...+++||+.|+|.
T Consensus        84 ~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~  163 (343)
T TIGR01305        84 KAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEM  163 (343)
T ss_pred             HHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHH
Confidence            999976 4555566778899999999999999999888999999999999999999999999999876555555555555


Q ss_pred             HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcccccee
Q psy3862         174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  253 (671)
Q Consensus       174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V  253 (671)
                      ++                                                     +|+++|||+|||||||||+||||.+
T Consensus       164 a~-----------------------------------------------------~Li~aGAD~ikVgiGpGSicttR~~  190 (343)
T TIGR01305       164 VE-----------------------------------------------------ELILSGADIVKVGIGPGSVCTTRTK  190 (343)
T ss_pred             HH-----------------------------------------------------HHHHcCCCEEEEcccCCCcccCcee
Confidence            55                                                     5555555556999999999999999


Q ss_pred             cccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862         254 TGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV  333 (671)
Q Consensus       254 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i  333 (671)
                      +|+|+||+|||++|+++++++                                                         ++
T Consensus       191 ~Gvg~pqltAv~~~a~aa~~~---------------------------------------------------------~v  213 (343)
T TIGR01305       191 TGVGYPQLSAVIECADAAHGL---------------------------------------------------------KG  213 (343)
T ss_pred             CCCCcCHHHHHHHHHHHhccC---------------------------------------------------------CC
Confidence            999999999999999999864                                                         46


Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA  413 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~  413 (671)
                      |||+                                                                            
T Consensus       214 ~VIa----------------------------------------------------------------------------  217 (343)
T TIGR01305       214 HIIS----------------------------------------------------------------------------  217 (343)
T ss_pred             eEEE----------------------------------------------------------------------------
Confidence            7766                                                                            


Q ss_pred             cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862         414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~  493 (671)
                                                     |||+..++|++|++.+|||+||+|.+.+|+.+++++.+..+|+++|.|+
T Consensus       218 -------------------------------DGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yr  266 (343)
T TIGR01305       218 -------------------------------DGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFY  266 (343)
T ss_pred             -------------------------------cCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEe
Confidence                                           8999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccc
Q psy3862         494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNN  568 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~  568 (671)
                      ||+|..||.+..+..++|+..+|..+.++|.|++.+.+..|+|+++++++|+|+..++|++.+++|+.++.+.|.
T Consensus       267 GMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~~~~~  341 (343)
T TIGR01305       267 GMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRVTQQHNT  341 (343)
T ss_pred             ccchHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEECccccc
Confidence            999999998666778899889999999999999999999999999999999999999999999999999887654

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=6e-66  Score=558.70  Aligned_cols=323  Identities=23%  Similarity=0.344  Sum_probs=278.7

Q ss_pred             cceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC
Q psy3862         286 AQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY  365 (671)
Q Consensus       286 ~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~  365 (671)
                      -|++ ...+||||||||+|++|++.| +|||++|+|+    +.+.+++|||+||||||++++||++|++.||||+||+++
T Consensus         2 ~~~~-~~~~ltfdDvll~P~~s~~~~-~~vdl~t~lt----~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~   75 (404)
T PRK06843          2 PNKI-TKEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNM   75 (404)
T ss_pred             Cccc-cccccCccceEEccCCCccCH-Hhccccchhh----hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCC
Confidence            3454 456899999999999999995 9999999997    578899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCccc-------------------------c---------------c----------ceeeecccCh---
Q psy3862         366 TLEEWKAFAVQNPDV-------------------------I---------------K----------HVADGGCTSP---  392 (671)
Q Consensus       366 ~~e~~~~~v~~~~~~-------------------------~---------------~----------~v~~~~~~~~---  392 (671)
                      ++|+|.++++++++.                         +               +          .++++.++++   
T Consensus        76 ~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~  155 (404)
T PRK06843         76 SIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTI  155 (404)
T ss_pred             CHHHHHHHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHH
Confidence            999999999754321                         0               0          2455555655   


Q ss_pred             hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccc
Q psy3862         393 GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMF  471 (671)
Q Consensus       393 ~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g  471 (671)
                      ++++.|+++|+|+|+|| ++|||+.+..++++.++.+||.+.         ++.|||.|.+.++ ++++|||+|+||+ |
T Consensus       156 ~~v~~lv~aGvDvI~iD-~a~g~~~~~~~~v~~ik~~~p~~~---------vi~g~V~T~e~a~~l~~aGaD~I~vG~-g  224 (404)
T PRK06843        156 ERVEELVKAHVDILVID-SAHGHSTRIIELVKKIKTKYPNLD---------LIAGNIVTKEAALDLISVGADCLKVGI-G  224 (404)
T ss_pred             HHHHHHHhcCCCEEEEE-CCCCCChhHHHHHHHHHhhCCCCc---------EEEEecCCHHHHHHHHHcCCCEEEECC-C
Confidence            46677899999999999 999999999999999998888774         5678899999998 6799999999996 9


Q ss_pred             cCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhcc
Q psy3862         472 AGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACT  543 (671)
Q Consensus       472 ~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~  543 (671)
                      || |+||||.+        .|+|.||++++.+|+..+.++.   .++|+   |+++|||+|||+     ||+|++|++++
T Consensus       225 ~G-s~c~tr~~--------~g~g~p~ltai~~v~~~~~~~~vpVIAdGG---I~~~~Di~KALalGA~aVmvGs~~agt~  292 (404)
T PRK06843        225 PG-SICTTRIV--------AGVGVPQITAICDVYEVCKNTNICIIADGG---IRFSGDVVKAIAAGADSVMIGNLFAGTK  292 (404)
T ss_pred             CC-cCCcceee--------cCCCCChHHHHHHHHHHHhhcCCeEEEeCC---CCCHHHHHHHHHcCCCEEEEcceeeeee
Confidence            99 99999875        5789999999988876554331   35554   799999999999     99999999999


Q ss_pred             ccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcc----ccccccCCCceEe
Q psy3862         544 YVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA----QLNNVAAEGKTVQ  619 (671)
Q Consensus       544 e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~----~~~~~~~eG~~~~  619 (671)
                      ||||+++.                         .+| +++|.||||+|+.||.+ ++.+||+.    ..++++|||+++.
T Consensus       293 Espg~~~~-------------------------~~g-~~~K~yrGmgS~~Am~~-~~~~ry~~~~~~~~~~~v~eGveg~  345 (404)
T PRK06843        293 ESPSEEII-------------------------YNG-KKFKSYVGMGSISAMKR-GSKSRYFQLENNEPKKLVPEGIEGM  345 (404)
T ss_pred             cCCCcEEE-------------------------ECC-EEEEEEeccchHHHHhc-cccccccccccccccccCCCccEEE
Confidence            99999421                         335 57899999999999974 45689976    2467999999999


Q ss_pred             cccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         620 VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       620 v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      ||||||++++|++|+|||||+|+|+|+++|+|||+|++|+|+|.+
T Consensus       346 v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t~~  390 (404)
T PRK06843        346 VPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS  390 (404)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEchh
Confidence            999999999999999999999999999999999999999999976

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=100.00  E-value=1.4e-65  Score=570.31  Aligned_cols=320  Identities=21%  Similarity=0.272  Sum_probs=275.1

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      +..+||||||||+|++|++.||++|||+++++      +.+++|||||||||||+.+||++||++||+|+||||+++|+|
T Consensus         8 ~~~~ltfddvll~p~~~~~~~~~~v~~~t~~~------~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~q   81 (475)
T TIGR01303         8 PGYDLTYNDVFMVPSRSEVGSRFDVDLSTADG------TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAV   81 (475)
T ss_pred             CCCCCCccceEEccCccCccCCCceeeccccc------CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHH
Confidence            46789999999999999999989999999987      368999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcc--c----------------------------------------c---------------------------
Q psy3862         371 KAFAVQNPD--V----------------------------------------I---------------------------  381 (671)
Q Consensus       371 ~~~v~~~~~--~----------------------------------------~---------------------------  381 (671)
                      .++++.++.  .                                        +                           
T Consensus        82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~  161 (475)
T TIGR01303        82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPA  161 (475)
T ss_pred             HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCC
Confidence            998875411  0                                        0                           


Q ss_pred             ----------------cc------------------------------------eeeecccCh---hhHHHHHHcCCcEE
Q psy3862         382 ----------------KH------------------------------------VADGGCTSP---GDVAKAMGAGADFV  406 (671)
Q Consensus       382 ----------------~~------------------------------------v~~~~~~~~---~~~~~l~~aG~d~i  406 (671)
                                      ++                                    +.+..++.+   +++..|+++|+|+|
T Consensus       162 ~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i  241 (475)
T TIGR01303       162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVL  241 (475)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEE
Confidence                            00                                    111111222   45667789999999


Q ss_pred             EEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862         407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKD  485 (671)
Q Consensus       407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~  485 (671)
                      +|| ++|||+.+++++++.++..||.+.         |++||+.|.+.++ ++++|||+|+||+ ||| |+||||.+   
T Consensus       242 ~~D-~a~g~~~~~~~~i~~i~~~~~~~~---------vi~g~~~t~~~~~~l~~~G~d~i~vg~-g~G-s~~ttr~~---  306 (475)
T TIGR01303       242 VID-TAHGHQVKMISAIKAVRALDLGVP---------IVAGNVVSAEGVRDLLEAGANIIKVGV-GPG-AMCTTRMM---  306 (475)
T ss_pred             EEe-CCCCCcHHHHHHHHHHHHHCCCCe---------EEEeccCCHHHHHHHHHhCCCEEEECC-cCC-ccccCccc---
Confidence            999 999999999999999999888773         6789999999999 5699999999996 999 99999975   


Q ss_pred             CeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcc
Q psy3862         486 GKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRA  557 (671)
Q Consensus       486 g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a  557 (671)
                           +|+|+||++|+.+|+.++.+|   ..++|+   |+++|||+|||+     ||+|++|||++|+||+++.+     
T Consensus       307 -----~~~g~~~~~a~~~~~~~~~~~~~~viadGg---i~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~-----  373 (475)
T TIGR01303       307 -----TGVGRPQFSAVLECAAEARKLGGHVWADGG---VRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRD-----  373 (475)
T ss_pred             -----cCCCCchHHHHHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEe-----
Confidence                 689999999999998776665   246664   799999999999     99999999999999995210     


Q ss_pred             eEEEecccccccccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceE----ecccccCHHHHHHH
Q psy3862         558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTV----QVPYRGDVNDTVQD  632 (671)
Q Consensus       558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~----~v~~kG~v~~~l~~  632 (671)
                                         .+| +++|.||||+|++||.+.++.+||+.+. ++.+|||+++    .||||||++++|++
T Consensus       374 -------------------~~g-~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~  433 (475)
T TIGR01303       374 -------------------RDG-RPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDH  433 (475)
T ss_pred             -------------------ECC-EEEEEEecccCHHHHhhccccchhhhhhccccccCceecccccccCCCCCHHHHHHH
Confidence                               345 5789999999999998666788998643 5689999996    56789999999999


Q ss_pred             HHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         633 ILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       633 l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      |+|||||+|+|+|+++|+|||++++|+|+|.+
T Consensus       434 ~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~~  465 (475)
T TIGR01303       434 IISGVRSSCTYAGASSLEEFHERAVVGVQSGA  465 (475)
T ss_pred             HHHHHHHHhhhcCCCcHHHHHhCCEEEEEccc
Confidence            99999999999999999999999999999975

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=100.00  E-value=6.2e-63  Score=526.28  Aligned_cols=325  Identities=45%  Similarity=0.718  Sum_probs=273.2

Q ss_pred             CCCCCceEEecCCcC-CCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862          18 KLDFKDVMLRPKRST-LKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA   96 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~-~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~   96 (671)
                      +||||||+|+|++++ ..++.+|||+++++    ++++|++||++||||+|++.+||++|++.||||+||+|+++|+|.+
T Consensus         2 ~ltfdDVllvP~~s~v~~s~~dv~~~~~~~----~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~   77 (352)
T PF00478_consen    2 GLTFDDVLLVPGRSTVLPSRSDVSLSTKLT----RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAE   77 (352)
T ss_dssp             E--GGGEEEE--SBSSTGGGGG-BEEEESS----TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHH
T ss_pred             CCccccEEEecCCCCCCCCHhheECccccc----CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHH
Confidence            689999999999998 44568888888887    7999999999999999999999999999999999999999999988


Q ss_pred             hhhc----Ccc----cccc--eEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE
Q psy3862          97 FAVQ----NPD----VIKH--VAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG  166 (671)
Q Consensus        97 ~i~~----~p~----~~~~--~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g  166 (671)
                      ++++    .|.    ..++  +++++|...++.+|+.+|+++  ++|++++|.+|||++..++.++++|+.||+..+++|
T Consensus        78 ~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~a--gvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaG  155 (352)
T PF00478_consen   78 EVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEA--GVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAG  155 (352)
T ss_dssp             HHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHT--T-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEE
T ss_pred             HHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHc--CCCEEEccccCccHHHHHHHHHHHHHhCCCceEEec
Confidence            8752    122    1223  456777887889999999998  899999999999999999999999999987666665


Q ss_pred             EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                      |+.                                                     |++++++|+++|||+|||||||||
T Consensus       156 NV~-----------------------------------------------------T~e~a~~L~~aGad~vkVGiGpGs  182 (352)
T PF00478_consen  156 NVV-----------------------------------------------------TYEGAKDLIDAGADAVKVGIGPGS  182 (352)
T ss_dssp             EE------------------------------------------------------SHHHHHHHHHTT-SEEEESSSSST
T ss_pred             ccC-----------------------------------------------------CHHHHHHHHHcCCCEEEEeccCCc
Confidence            554                                                     455555555555666699999999


Q ss_pred             ccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccC
Q psy3862         247 VCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNS  326 (671)
Q Consensus       247 ~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s  326 (671)
                      +||||+|+|+|+||+|||+|||++|+++                                                    
T Consensus       183 iCtTr~v~GvG~PQ~tAv~~~a~~a~~~----------------------------------------------------  210 (352)
T PF00478_consen  183 ICTTREVTGVGVPQLTAVYECAEAARDY----------------------------------------------------  210 (352)
T ss_dssp             TBHHHHHHSBSCTHHHHHHHHHHHHHCT----------------------------------------------------
T ss_pred             ccccccccccCCcHHHHHHHHHHHhhhc----------------------------------------------------
Confidence            9999999999999999999999999864                                                    


Q ss_pred             CceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEE
Q psy3862         327 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFV  406 (671)
Q Consensus       327 ~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i  406 (671)
                           ++||||                                                                     
T Consensus       211 -----~v~iIA---------------------------------------------------------------------  216 (352)
T PF00478_consen  211 -----GVPIIA---------------------------------------------------------------------  216 (352)
T ss_dssp             -----TSEEEE---------------------------------------------------------------------
T ss_pred             -----cCceee---------------------------------------------------------------------
Confidence                 467777                                                                     


Q ss_pred             EEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCC
Q psy3862         407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDG  486 (671)
Q Consensus       407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g  486 (671)
                                                            |||+..++|++|+|.+|||+||+|.+++|+.++|++.+..+|
T Consensus       217 --------------------------------------DGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g  258 (352)
T PF00478_consen  217 --------------------------------------DGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDG  258 (352)
T ss_dssp             --------------------------------------ESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETT
T ss_pred             --------------------------------------cCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECC
Confidence                                                  899999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCcccHHHHHhhcccccccc-------ccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceE
Q psy3862         487 KKVKLFYGMSSTTAMDKHAGGVAEYR-------AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATF  559 (671)
Q Consensus       487 ~~~k~g~G~~q~tAi~~~a~~~~~y~-------~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~f  559 (671)
                      .++|.|+||+|..|+.+..+..++|+       .++|....++|.|++.+.+..++|+++++++++|...++|++.++.|
T Consensus       259 ~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~f  338 (352)
T PF00478_consen  259 KRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARF  338 (352)
T ss_dssp             EEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEE
T ss_pred             eEEEEecccccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeE
Confidence            99999999999999987556667774       35788888999999999999999999999999999999999999999


Q ss_pred             EEeccc
Q psy3862         560 IRCTAQ  565 (671)
Q Consensus       560 v~~~~~  565 (671)
                      ++++.+
T Consensus       339 vrvs~a  344 (352)
T PF00478_consen  339 VRVSSA  344 (352)
T ss_dssp             EEESHH
T ss_pred             EEEChh
Confidence            987664

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=6.7e-63  Score=552.07  Aligned_cols=325  Identities=20%  Similarity=0.218  Sum_probs=274.7

Q ss_pred             eeccccCCCceeeeecCCCc--cCCCCcccceeeeee-c-cCC-ceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEcc
Q psy3862         289 IINDIKLDFKDVMLRPKRST--LKSRSEVDITRTFTF-R-NSG-KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK  363 (671)
Q Consensus       289 i~~~~~l~fdDVll~P~rst--~~sr~eVdl~~~l~~-~-~s~-~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr  363 (671)
                      +.++.+||||||||+|++|+  +.| ++|||+++|+. + .++ ++.+++|++||+||||++.+||++|++.|||++||+
T Consensus         4 ~~~~~~~tfddvll~P~~~~~~~~~-~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~   82 (502)
T PRK07107          4 YFEEPSRTFSEYLLVPGLSSKECVP-ANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFG   82 (502)
T ss_pred             eecCCCccccceEEccCCCCCCcCc-cceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeC
Confidence            35788899999999999997  455 89999999983 2 333 789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhcCccc---------------------------------------------------------------
Q psy3862         364 YYTLEEWKAFAVQNPDV---------------------------------------------------------------  380 (671)
Q Consensus       364 ~~~~e~~~~~v~~~~~~---------------------------------------------------------------  380 (671)
                      |+++|+|+++++++++.                                                               
T Consensus        83 n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~  162 (502)
T PRK07107         83 SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTK  162 (502)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCC
Confidence            99999999985432110                                                               


Q ss_pred             -----------c-----------------------c--------------------------------ceeeecccC--h
Q psy3862         381 -----------I-----------------------K--------------------------------HVADGGCTS--P  392 (671)
Q Consensus       381 -----------~-----------------------~--------------------------------~v~~~~~~~--~  392 (671)
                                 +                       +                                ++....+++  +
T Consensus       163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~  242 (502)
T PRK07107        163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRD  242 (502)
T ss_pred             HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhh
Confidence                       0                       0                                000011111  2


Q ss_pred             --hhHHHHHHcCCcEEEEcccccccccccccccccccccccc-ccccccccCceeeccccCchhHHH-HHHcCCcEEEEC
Q psy3862         393 --GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPL-VGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLG  468 (671)
Q Consensus       393 --~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG  468 (671)
                        ++.+.|+++|+|+|+|| ++|||+.++++.++.++..||. +         .|.+|||.|.+.++ ++++|||+|+||
T Consensus       243 ~~~ra~~Lv~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~---------~V~aGnV~t~e~a~~li~aGAd~I~vg  312 (502)
T PRK07107        243 YAERVPALVEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSV---------KVGAGNVVDREGFRYLAEAGADFVKVG  312 (502)
T ss_pred             HHHHHHHHHHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCc---------eEEeccccCHHHHHHHHHcCCCEEEEC
Confidence              44566789999999999 9999999999998888877763 3         46899999999999 679999999999


Q ss_pred             ccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEe------eecCCCHHHHHH-----HHHhh
Q psy3862         469 GMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQ------VPYRGDVNDTVQ-----DILGG  537 (671)
Q Consensus       469 ~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~------i~~~Gdi~kAia-----vMlG~  537 (671)
                      + ||| |+||||.+        +|+|+||++|+.+|+.++++|+.+.|.+++      |+++|||+||||     ||+|+
T Consensus       313 ~-g~G-s~c~tr~~--------~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~  382 (502)
T PRK07107        313 I-GGG-SICITREQ--------KGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGR  382 (502)
T ss_pred             C-CCC-cCcccccc--------cCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeCh
Confidence            6 999 99999875        689999999999999988887767775555      699999999999     99999


Q ss_pred             HhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcc--ccccccCCC
Q psy3862         538 LRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA--QLNNVAAEG  615 (671)
Q Consensus       538 ~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~--~~~~~~~eG  615 (671)
                      +|||++|+||+++                         +.+| +++|.||||+|..||.    .+||+.  ..++++|||
T Consensus       383 ~~ag~~espg~~~-------------------------~~~g-~~~k~yrgm~s~~a~~----~~ry~~~~~~~~~~~eg  432 (502)
T PRK07107        383 YFARFDESPTNKV-------------------------NING-NYMKEYWGEGSNRARN----WQRYDLGGDKKLSFEEG  432 (502)
T ss_pred             hhhccccCCCcEE-------------------------EECC-EEEEEeecccCHhhhh----ccccccccccccccCCc
Confidence            9999999999942                         2346 5789999999999995    467762  235789999


Q ss_pred             ceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         616 KTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       616 ~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      +++.||||||++++|++|+|||||+|+|+|+.+|+|||++++|+|+|.+
T Consensus       433 v~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~~~t~~  481 (502)
T PRK07107        433 VDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLVSST  481 (502)
T ss_pred             cEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEEEECcc
Confidence            9999999999999999999999999999999999999999999999976

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-61  Score=537.22  Aligned_cols=372  Identities=29%  Similarity=0.432  Sum_probs=277.4

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA   96 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~   96 (671)
                      .+||||||+|+|+++++.| ++||++|+||    +.+.|++||++++|+|||+.+||+|||++||||+||+||++|+|.+
T Consensus        16 ~~lt~ddv~l~p~~~~~~~-~~v~~~t~l~----~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~   90 (495)
T PTZ00314         16 TGLTYDDVILLPGYIDFSR-DDVDLSTRLT----RNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVE   90 (495)
T ss_pred             cCCCccceEeccccccccc-cccccccccc----CCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHH
Confidence            5899999999999999975 7999999998    7899999999999999999999999999999999999999999988


Q ss_pred             hhhcCcc-----cccceEEecCCChhhHHHHHHHHHhCC-----------------------------------------
Q psy3862          97 FAVQNPD-----VIKHVAVSSGISAKDLAGLKEILAALP-----------------------------------------  130 (671)
Q Consensus        97 ~i~~~p~-----~~~~~~v~~G~~~~d~~rl~~l~~a~~-----------------------------------------  130 (671)
                      ++++...     ...++.+.+..+.   ..+.+++....                                         
T Consensus        91 ~v~kvk~~e~g~i~dpvtv~pd~tv---~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~  167 (495)
T PTZ00314         91 EVRKVKRFENGFIMDPYVLSPNHTV---ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTP  167 (495)
T ss_pred             HHhhccccccccccCCeecCCCCCH---HHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCC
Confidence            8863221     1112222111111   11111221100                                         


Q ss_pred             ------------------------CceEEEeeccCCCChHHHHHHHHHH--HhCCCc------eEEE-EEec----cHHH
Q psy3862         131 ------------------------EIEYICLDVANGYTQTFVDFVRRIR--EMYPKH------VIIA-GNVV----TGEM  173 (671)
Q Consensus       131 ------------------------~~d~Ivld~a~G~~~~~~~~ik~lr--~~~P~~------~li~-g~v~----t~e~  173 (671)
                                              .....++|..+ ....++ ..+++.  ..||++      .+++ +.+.    ..++
T Consensus       168 ~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGII-T~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~  245 (495)
T PTZ00314        168 REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALV-SRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIER  245 (495)
T ss_pred             cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEE-EehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHH
Confidence                                    00011111100 000000 011111  125543      2444 4553    2589


Q ss_pred             HHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcc
Q psy3862         174 VEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVC  248 (671)
Q Consensus       174 a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~  248 (671)
                      +++|+++|+|+|++|.+|||+.     ++++++.+|++.+        +||||.|.++++.|+++|||+|+||+||||+|
T Consensus       246 ~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v--------~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~  317 (495)
T PTZ00314        246 AAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDI--------IAGNVVTADQAKNLIDAGADGLRIGMGSGSIC  317 (495)
T ss_pred             HHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceE--------EECCcCCHHHHHHHHHcCCCEEEECCcCCccc
Confidence            9999999999999999999862     3334444444322        69999999999999999999999999999999


Q ss_pred             ccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCc
Q psy3862         249 TTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGK  328 (671)
Q Consensus       249 ~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~  328 (671)
                      |||.++|+|+||++|+++|++++++.                                                      
T Consensus       318 ~t~~~~~~g~p~~~ai~~~~~~~~~~------------------------------------------------------  343 (495)
T PTZ00314        318 ITQEVCAVGRPQASAVYHVARYARER------------------------------------------------------  343 (495)
T ss_pred             ccchhccCCCChHHHHHHHHHHHhhc------------------------------------------------------
Confidence            99999999999999999999999753                                                      


Q ss_pred             eeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEE
Q psy3862         329 TYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVML  408 (671)
Q Consensus       329 ~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~i  408 (671)
                         ++|+|+                                                                       
T Consensus       344 ---~v~vIa-----------------------------------------------------------------------  349 (495)
T PTZ00314        344 ---GVPCIA-----------------------------------------------------------------------  349 (495)
T ss_pred             ---CCeEEe-----------------------------------------------------------------------
Confidence               477777                                                                       


Q ss_pred             ccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeE
Q psy3862         409 GGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKK  488 (671)
Q Consensus       409 d~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~  488 (671)
                                                          +||+..+++++|++.+|||+||+|.+..|+.+||++.+..+|++
T Consensus       350 ------------------------------------dGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~  393 (495)
T PTZ00314        350 ------------------------------------DGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVR  393 (495)
T ss_pred             ------------------------------------cCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeE
Confidence                                                79999999999999999999999976666555555554444444


Q ss_pred             EEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccc
Q psy3862         489 VKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNN  568 (671)
Q Consensus       489 ~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~  568 (671)
                      +                                                                               
T Consensus       394 ~-------------------------------------------------------------------------------  394 (495)
T PTZ00314        394 L-------------------------------------------------------------------------------  394 (495)
T ss_pred             E-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             cccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcc
Q psy3862         569 VNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGAS  647 (671)
Q Consensus       569 ~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~  647 (671)
                                     |.||||+|..||...++.+||+... ++.+|||+++.||||||++++|++|.+||||+|+|+|++
T Consensus       395 ---------------k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~  459 (495)
T PTZ00314        395 ---------------KVYRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAH  459 (495)
T ss_pred             ---------------EEEeccchHHHhhcccccccccccccccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence                           4555555555554334445555422 457999999999999999999999999999999999999


Q ss_pred             ccccccc-----ccEEEEeccc
Q psy3862         648 KLKELPR-----RATFIRCTAQ  664 (671)
Q Consensus       648 ~l~el~~-----~a~Fvrvt~q  664 (671)
                      +|+|||+     |++|+|+|.+
T Consensus       460 ~i~~~~~~~~~~~~~f~~~t~~  481 (495)
T PTZ00314        460 SIPELHEKLYSGQVRFERRSGS  481 (495)
T ss_pred             cHHHHHhhcccCceEEEEEChh
Confidence            9999999     9999999975

>KOG2550|consensus

Probab=100.00  E-value=2.3e-61  Score=506.66  Aligned_cols=371  Identities=33%  Similarity=0.511  Sum_probs=287.5

Q ss_pred             ccccccc-cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC
Q psy3862          10 AQKIIND-IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY   88 (671)
Q Consensus        10 ~~~~~~~-~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n   88 (671)
                      +++++.. .+|||+|++|+|+++++.+ ++|||++.||    ++++|++|+++||||+||+.+||++||..||+|+||+|
T Consensus        20 ~~~L~~~~~~LtynDfliLPg~idF~s-~eVsL~t~lt----r~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhN   94 (503)
T KOG2550|consen   20 VQELFDSKIGLTYNDFLILPGFIDFAS-DEVSLQTKLT----RNITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHN   94 (503)
T ss_pred             HHHHhhcccCccccceeeccccccccc-ccceeehhhh----hcccccCceeccCCcccchhHHHHHHHhcCCceeeecC
Confidence            4556644 5899999999999999975 6999999998    78889999999999999999999999999999999999


Q ss_pred             CCHHHHHHhhhc----------Ccccccc-------------eE---E-----------ecC-CChhhHHHHH-------
Q psy3862          89 YTLEEWKAFAVQ----------NPDVIKH-------------VA---V-----------SSG-ISAKDLAGLK-------  123 (671)
Q Consensus        89 ~~~Eeq~~~i~~----------~p~~~~~-------------~~---v-----------~~G-~~~~d~~rl~-------  123 (671)
                      |+||+|+.++++          +|..+.|             .+   +           -+| ++.+|+.+++       
T Consensus        95 ctpe~QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~  174 (503)
T KOG2550|consen   95 CTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVS  174 (503)
T ss_pred             CCHHHHHHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhh
Confidence            999999888752          1211111             00   0           011 1233443332       


Q ss_pred             HHHHhCC--CceEEEeeccCCCC--------------hHHHHHH--HHHH--HhCCCc------eEEEE-Eecc----HH
Q psy3862         124 EILAALP--EIEYICLDVANGYT--------------QTFVDFV--RRIR--EMYPKH------VIIAG-NVVT----GE  172 (671)
Q Consensus       124 ~l~~a~~--~~d~Ivld~a~G~~--------------~~~~~~i--k~lr--~~~P~~------~li~g-~v~t----~e  172 (671)
                      ++|...+  ...-|.++.+|+..              .+++.++  .+++  +.||.+      +++|| ++.|    .+
T Consensus       175 ~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~  254 (503)
T KOG2550|consen  175 DVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKE  254 (503)
T ss_pred             hhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhH
Confidence            2222211  00011222221110              1111111  2232  347754      36666 4544    68


Q ss_pred             HHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862         173 MVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSV  247 (671)
Q Consensus       173 ~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~  247 (671)
                      +.+.|.+||+|+|++|++||.++     ++.+++++|.+++        +||||+|++++++||++||||+|||||+||+
T Consensus       255 rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~V--------iaGNVVT~~qa~nLI~aGaDgLrVGMGsGSi  326 (503)
T KOG2550|consen  255 RLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQI--------IAGNVVTKEQAANLIAAGADGLRVGMGSGSI  326 (503)
T ss_pred             HHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCcee--------eccceeeHHHHHHHHHccCceeEeccccCce
Confidence            89999999999999999999752     2234444444333        6999999999999999999999999999999


Q ss_pred             cccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCC
Q psy3862         248 CTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSG  327 (671)
Q Consensus       248 ~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~  327 (671)
                      ||||+|++|||||.||||+||++|+++                                                     
T Consensus       327 CiTqevma~GrpQ~TAVy~va~~A~q~-----------------------------------------------------  353 (503)
T KOG2550|consen  327 CITQKVMACGRPQGTAVYKVAEFANQF-----------------------------------------------------  353 (503)
T ss_pred             eeeceeeeccCCcccchhhHHHHHHhc-----------------------------------------------------
Confidence            999999999999999999999999974                                                     


Q ss_pred             ceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEE
Q psy3862         328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVM  407 (671)
Q Consensus       328 ~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~  407 (671)
                          ++|+||                                                                      
T Consensus       354 ----gvpviA----------------------------------------------------------------------  359 (503)
T KOG2550|consen  354 ----GVPCIA----------------------------------------------------------------------  359 (503)
T ss_pred             ----CCceee----------------------------------------------------------------------
Confidence                566666                                                                      


Q ss_pred             EccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862         408 LGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK  487 (671)
Q Consensus       408 id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~  487 (671)
                                                           +||+...++++|++..||+.||+|.+.+|+.++|++++..+|+
T Consensus       360 -------------------------------------DGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~  402 (503)
T KOG2550|consen  360 -------------------------------------DGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGV  402 (503)
T ss_pred             -------------------------------------cCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCe
Confidence                                                 8999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCcccHHHHHh-----hccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcc
Q psy3862         488 KVKLFYGMSSTTAMDK-----HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA  557 (671)
Q Consensus       488 ~~k~g~G~~q~tAi~~-----~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a  557 (671)
                      |+|+++||++++||..     ..+..++|..+.|..+.|+++|++.|-+...++++..++++.|++.+++++...
T Consensus       403 rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~  477 (503)
T KOG2550|consen  403 RLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMM  477 (503)
T ss_pred             eehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence            9999999999999983     223445555788888889999999999999999999999999999988877764

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=1e-61  Score=539.79  Aligned_cols=319  Identities=23%  Similarity=0.281  Sum_probs=271.9

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      ..+||||||||+|++|++.||++|||+++++      +.+++||+||||||||+.+||++|++.||+|+||+|+++++|.
T Consensus        10 ~~~ltfddvll~p~~~~~~~~~~v~~~t~~~------~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~   83 (479)
T PRK07807         10 AYDLTYDDVFLVPSRSDVGSRFDVDLSTADG------TGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVA   83 (479)
T ss_pred             CcCcCccceEecccccCccCCCceecccCCC------CccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHH
Confidence            4689999999999999999988999999753      5799999999999999999999999999999999999999999


Q ss_pred             HHHhcCcc--c-----------------------------------------c---------------------------
Q psy3862         372 AFAVQNPD--V-----------------------------------------I---------------------------  381 (671)
Q Consensus       372 ~~v~~~~~--~-----------------------------------------~---------------------------  381 (671)
                      ++++.++.  .                                         +                           
T Consensus        84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~itV~~  163 (479)
T PRK07807         84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDLVTLPA  163 (479)
T ss_pred             HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCceEECC
Confidence            98765310  0                                         0                           


Q ss_pred             ----------------cc------------------------------------eeeecccCh---hhHHHHHHcCCcEE
Q psy3862         382 ----------------KH------------------------------------VADGGCTSP---GDVAKAMGAGADFV  406 (671)
Q Consensus       382 ----------------~~------------------------------------v~~~~~~~~---~~~~~l~~aG~d~i  406 (671)
                                      +.                                    +.+..++.+   +.+..|+++|+|+|
T Consensus       164 d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i  243 (479)
T PRK07807        164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVL  243 (479)
T ss_pred             CCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCEE
Confidence                            00                                    011111122   33455688999999


Q ss_pred             EEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862         407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKD  485 (671)
Q Consensus       407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~  485 (671)
                      ++| ++|||+.+++++++.++..||.+.         |++|||.|.+.++ ++++|||+|+||+ ||| |+||||.+   
T Consensus       244 ~~D-~a~~~~~~~~~~i~~ik~~~p~~~---------v~agnv~t~~~a~~l~~aGad~v~vgi-g~g-sictt~~~---  308 (479)
T PRK07807        244 VVD-TAHGHQEKMLEALRAVRALDPGVP---------IVAGNVVTAEGTRDLVEAGADIVKVGV-GPG-AMCTTRMM---  308 (479)
T ss_pred             EEe-ccCCccHHHHHHHHHHHHHCCCCe---------EEeeccCCHHHHHHHHHcCCCEEEECc-cCC-cccccccc---
Confidence            999 999999999999999999999884         7899999999999 6799999999996 999 99999986   


Q ss_pred             CeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcc
Q psy3862         486 GKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRA  557 (671)
Q Consensus       486 g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a  557 (671)
                           +|+|+||+||+.+|+.++.+|   ..++|+   |+++||++|||+     ||+|++|||++|+||+++.+     
T Consensus       309 -----~~~~~p~~~av~~~~~~~~~~~~~via~gg---i~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~-----  375 (479)
T PRK07807        309 -----TGVGRPQFSAVLECAAAARELGAHVWADGG---VRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRD-----  375 (479)
T ss_pred             -----cCCchhHHHHHHHHHHHHHhcCCcEEecCC---CCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEec-----
Confidence                 578999999999998876654   246664   799999999999     99999999999999985221     


Q ss_pred             eEEEecccccccccchhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEec----ccccCHHHHHHH
Q psy3862         558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQV----PYRGDVNDTVQD  632 (671)
Q Consensus       558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v----~~kG~v~~~l~~  632 (671)
                                         .+| +.+|.||||+|.+||.+..+.+||+... +.++|||++.+|    |||||+.++|++
T Consensus       376 -------------------~~g-~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~  435 (479)
T PRK07807        376 -------------------RDG-RPYKESFGMASARAVAARTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDH  435 (479)
T ss_pred             -------------------cCC-eEEEEeeccccHHHHhcccCccchhhhcccCCCCCCccceeeeccCCCCCHHHHHHH
Confidence                               234 4678999999999998665667887643 578999999974    779999999999


Q ss_pred             HHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         633 ILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       633 l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      |.+||||+|+|+|+++|+|||++++|+|+|.+
T Consensus       436 l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~~  467 (479)
T PRK07807        436 ITSGVRSSCTYAGARTLAEFHERAVVGVQSAA  467 (479)
T ss_pred             HHHHHHHHHhhcCcCcHHHHHhCCEEEEECcc
Confidence            99999999999999999999999999999975

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=100.00  E-value=2.2e-57  Score=508.35  Aligned_cols=379  Identities=29%  Similarity=0.404  Sum_probs=285.0

Q ss_pred             ccccc-ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCC
Q psy3862          11 QKIIN-DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY   89 (671)
Q Consensus        11 ~~~~~-~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~   89 (671)
                      .++|+ ..+||||||+|+|+++++.| ++||++|.||    +.+.+++||++++|+|+++.+||.||+++||+|+||.|+
T Consensus        13 ~~~~~~~~~ltfddv~l~p~~~~~~~-~~~~~~t~lt----~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~a   87 (505)
T PLN02274         13 EKLFNQGVSYTYDDVIFHPGYIDFPA-DAVDLSTRLS----RNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNN   87 (505)
T ss_pred             HHHhcCCCCCCccceEecccccCcCC-cccccccccc----cccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCC
Confidence            34443 57899999999999999987 7999999998    889999999999999999999999999999999999999


Q ss_pred             CHHHHHHhhhcCcc-----cccceEEecCC---------------------------------ChhhHHH-------HHH
Q psy3862          90 TLEEWKAFAVQNPD-----VIKHVAVSSGI---------------------------------SAKDLAG-------LKE  124 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~-----~~~~~~v~~G~---------------------------------~~~d~~r-------l~~  124 (671)
                      ++|+|..++++...     ...++.+.+..                                 +.+|+.+       +.+
T Consensus        88 s~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~e  167 (505)
T PLN02274         88 TAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSE  167 (505)
T ss_pred             CHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHH
Confidence            99998766642110     00111111111                                 1111110       112


Q ss_pred             HHHh----------------------CCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc---------eEEEE-Eec
Q psy3862         125 ILAA----------------------LPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH---------VIIAG-NVV  169 (671)
Q Consensus       125 l~~a----------------------~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~---------~li~g-~v~  169 (671)
                      +|..                      .......++|..+ ..   -...+.++.  ..||++         .+++| ++.
T Consensus       168 IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~LvGvITr~DIlk~--~~~p~~~~~~~d~~~~l~vgaavg  244 (505)
T PLN02274        168 VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG-ELVDLVTRTDVKRV--KGYPKLGKPSVGKDGKLLVGAAIG  244 (505)
T ss_pred             HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHH--hhCcCccccccCCCCCEEEEEEEc
Confidence            2221                      1111112222111 10   111122221  236654         34444 564


Q ss_pred             c----HHHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         170 T----GEMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       170 t----~e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +    .+++++|++||+|+|++|.+|||+     .++++++.+|+..+        ++|||+|.+.+++|+++|||+|+|
T Consensus       245 ~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~v--------i~g~v~t~e~a~~a~~aGaD~i~v  316 (505)
T PLN02274        245 TRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDV--------IGGNVVTMYQAQNLIQAGVDGLRV  316 (505)
T ss_pred             CCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcE--------EEecCCCHHHHHHHHHcCcCEEEE
Confidence            3    599999999999999999999996     23445555554322        599999999999999999999999


Q ss_pred             cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862         241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~  320 (671)
                      |+|+||+||||+++|+|+||++++++|++++++                                               
T Consensus       317 g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-----------------------------------------------  349 (505)
T PLN02274        317 GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-----------------------------------------------  349 (505)
T ss_pred             CCCCCccccCccccccCCCcccHHHHHHHHHHh-----------------------------------------------
Confidence            999999999999999999999999999999864                                               


Q ss_pred             eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHH
Q psy3862         321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG  400 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~  400 (671)
                                .++|||+                                                               
T Consensus       350 ----------~~vpVIa---------------------------------------------------------------  356 (505)
T PLN02274        350 ----------HGVPVIA---------------------------------------------------------------  356 (505)
T ss_pred             ----------cCCeEEE---------------------------------------------------------------
Confidence                      2578888                                                               


Q ss_pred             cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCc
Q psy3862         401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                                                                  +||+..+++++++|.+|||+||+|.+..|+.+|+++
T Consensus       357 --------------------------------------------dGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~  392 (505)
T PLN02274        357 --------------------------------------------DGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGE  392 (505)
T ss_pred             --------------------------------------------eCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcc
Confidence                                                        899999999999999999999999988888888877


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEE
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI  560 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv  560 (671)
                      .+..+|.++|.|+||+|+.||..                                                         
T Consensus       393 ~~~~~g~~~k~yrgmgs~~a~~~---------------------------------------------------------  415 (505)
T PLN02274        393 YFYQDGVRVKKYRGMGSLEAMTK---------------------------------------------------------  415 (505)
T ss_pred             eeeeCCeEEEEEeccchHHHHhc---------------------------------------------------------
Confidence            76666666666666666666642                                                         


Q ss_pred             Eecccccccccchhhhcccccccceeeccccccccccccccchhccc-cccccCCCceEecccccCHHHHHHHHHHHHhh
Q psy3862         561 RCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRS  639 (671)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs  639 (671)
                                                            ++.+||+.+ .++.+|||+++.||||||++++|++|+|||||
T Consensus       416 --------------------------------------~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~  457 (505)
T PLN02274        416 --------------------------------------GSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQ  457 (505)
T ss_pred             --------------------------------------cccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHH
Confidence                                                  122333321 14579999999999999999999999999999


Q ss_pred             hccccCcccccccccc-----cEEEEeccc
Q psy3862         640 ACTYVGASKLKELPRR-----ATFIRCTAQ  664 (671)
Q Consensus       640 ~m~y~Ga~~l~el~~~-----a~Fvrvt~q  664 (671)
                      +|+|+|+++|+|||+|     ++|+|+|.+
T Consensus       458 ~~~y~g~~~~~~~~~~~~~~~~~f~~~t~~  487 (505)
T PLN02274        458 GFQDLGASSLQSAHELLRSGTLRLEVRTGA  487 (505)
T ss_pred             hhhhcCcchHHHHHhhcccCceEEEEEchh
Confidence            9999999999999999     799999975

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=100.00  E-value=2.2e-58  Score=487.08  Aligned_cols=305  Identities=21%  Similarity=0.315  Sum_probs=261.8

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHH
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFA  374 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v  374 (671)
                      ||||||+|+|++++..||+||||+++|.     ..++++|++++||||+++.+||+.++++|+++++|| +++|+|.+|+
T Consensus         2 ~~FddV~lvp~~lp~~s~~dVdlst~~~-----~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfv   75 (321)
T TIGR01306         2 FDYEDIQLIPNKCIVNSRSECDTSVTLG-----KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFI   75 (321)
T ss_pred             CCcccEEEecCCCCCCCHHHceeeEEEC-----CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHH
Confidence            8999999999999999999999999997     678999999999999999999999999999999999 6999999999


Q ss_pred             hcCcccccceeeecccChhh---HHHHHHcC--CcEEEEccccccccccccccccccccccccccccccccCceeecccc
Q psy3862         375 VQNPDVIKHVADGGCTSPGD---VAKAMGAG--ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCT  449 (671)
Q Consensus       375 ~~~~~~~~~v~~~~~~~~~~---~~~l~~aG--~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v  449 (671)
                      ++.++....+..+.+++++|   +.+|+++|  +|+|++| +|||||.++++.++.++..+|..         .++.|||
T Consensus        76 rk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D-~ahg~s~~~~~~i~~i~~~~p~~---------~vi~GnV  145 (321)
T TIGR01306        76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITID-IAHGHSNSVINMIKHIKTHLPDS---------FVIAGNV  145 (321)
T ss_pred             HhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEe-CccCchHHHHHHHHHHHHhCCCC---------EEEEecC
Confidence            88654333677778887655   55668999  7999999 99999999999988888877655         3678889


Q ss_pred             CchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCc--ccHHHHHhhccccccccccCCceEeeecCCC
Q psy3862         450 SPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGM--SSTTAMDKHAGGVAEYRAAEGKTVQVPYRGD  526 (671)
Q Consensus       450 ~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~--~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gd  526 (671)
                      .+.+.++ ++++|||+|+||+ ||| ++||||++        +|.|.  +|++|+.+|+.+++-...++|+   |+++||
T Consensus       146 ~t~e~a~~l~~aGad~I~V~~-G~G-~~~~tr~~--------~g~g~~~~~l~ai~ev~~a~~~pVIadGG---Ir~~~D  212 (321)
T TIGR01306       146 GTPEAVRELENAGADATKVGI-GPG-KVCITKIK--------TGFGTGGWQLAALRWCAKAARKPIIADGG---IRTHGD  212 (321)
T ss_pred             CCHHHHHHHHHcCcCEEEECC-CCC-ccccceee--------eccCCCchHHHHHHHHHHhcCCeEEEECC---cCcHHH
Confidence            9999999 5799999999996 999 99999986        34455  4999999998765433456664   799999


Q ss_pred             HHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccccccccccc
Q psy3862         527 VNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATF  601 (671)
Q Consensus       527 i~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~  601 (671)
                      |+|||+     ||+|++|||++|+||+.+.                         .+| +++|.||||.+.  +.+    
T Consensus       213 i~KALa~GAd~Vmig~~~ag~~Espg~~~~-------------------------~~g-~~~k~y~g~~~~--~~~----  260 (321)
T TIGR01306       213 IAKSIRFGASMVMIGSLFAGHEESPGETVE-------------------------KDG-KLYKEYFGSASE--FQK----  260 (321)
T ss_pred             HHHHHHcCCCEEeechhhcCcccCCCceEe-------------------------eCC-eEHhhhcCchhh--hcc----
Confidence            999999     9999999999999999522                         235 578999998653  221    


Q ss_pred             chhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc-ccc
Q psy3862         602 IRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ-LNN  667 (671)
Q Consensus       602 ~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q-~n~  667 (671)
                            ..++.+||++++||||||++++|++|+|||||+|+|+|+++|+||| +++|+++|++ .|+
T Consensus       261 ------~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~~~~~~  320 (321)
T TIGR01306       261 ------GEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKNSIFNG  320 (321)
T ss_pred             ------cccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEecCCcCC
Confidence                  1223359999999999999999999999999999999999999999 8999999987 553

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=100.00  E-value=2.8e-57  Score=503.44  Aligned_cols=362  Identities=35%  Similarity=0.545  Sum_probs=268.5

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHHh
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF   97 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~   97 (671)
                      +||||||+|+|+++++.| ++|||+|+||    ++++|++||+++||+++|+.+||.+|++.||+|+||+||++|+|.++
T Consensus         1 ~~t~ddv~l~p~~~~~~~-~~~~~~~~~~----~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~   75 (450)
T TIGR01302         1 GLTFDDVLLLPGFIDVEP-DDVDLSTRIT----RNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ   75 (450)
T ss_pred             CCCccceEecccccccCc-cccccccccc----cccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH
Confidence            589999999999999987 6999999998    89999999999999999999999999999999999999999999888


Q ss_pred             hhcC---ccc--ccceEEecCCChh---------------------------------hHH-------HHHHHH------
Q psy3862          98 AVQN---PDV--IKHVAVSSGISAK---------------------------------DLA-------GLKEIL------  126 (671)
Q Consensus        98 i~~~---p~~--~~~~~v~~G~~~~---------------------------------d~~-------rl~~l~------  126 (671)
                      +++.   .+.  ..++.+....+..                                 |+.       .+.++|      
T Consensus        76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~  155 (450)
T TIGR01302        76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVI  155 (450)
T ss_pred             HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCE
Confidence            7521   110  1111111111111                                 110       011111      


Q ss_pred             ---------------HhCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc------e-EEEEEecc----HHHHHHH
Q psy3862         127 ---------------AALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH------V-IIAGNVVT----GEMVEEL  177 (671)
Q Consensus       127 ---------------~a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~------~-li~g~v~t----~e~a~~L  177 (671)
                                     .......++++|.. |..   -...+.++.+  .||..      . ++.|++.+    .+++++|
T Consensus       156 ~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~--~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L  232 (450)
T TIGR01302       156 TVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR--KFPHASKDENGRLIVGAAVGTREFDKERAEAL  232 (450)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc--cCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence                           11100111222211 110   0011111111  23432      2 45556654    5899999


Q ss_pred             HHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccce
Q psy3862         178 ILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  252 (671)
Q Consensus       178 i~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~  252 (671)
                      +++|+|+|.+|.+|||+     .++++++++|++++        ++|||.|.+++++|+++|||+|+||+||||+||||.
T Consensus       233 ~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~v--------i~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~  304 (450)
T TIGR01302       233 VKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDI--------IAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI  304 (450)
T ss_pred             HHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCE--------EEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccce
Confidence            99999999999999986     23344444444322        699999999999999999999999999999999999


Q ss_pred             ecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeC
Q psy3862         253 KTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQG  332 (671)
Q Consensus       253 V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~  332 (671)
                      ++|+|+||++|+.+|++++++.                                                         +
T Consensus       305 ~~~~g~p~~~~i~~~~~~~~~~---------------------------------------------------------~  327 (450)
T TIGR01302       305 VAGVGVPQITAVYDVAEYAAQS---------------------------------------------------------G  327 (450)
T ss_pred             ecCCCccHHHHHHHHHHHHhhc---------------------------------------------------------C
Confidence            9999999999999999998753                                                         4


Q ss_pred             cceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccc
Q psy3862         333 VPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF  412 (671)
Q Consensus       333 iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a  412 (671)
                      +|||+                                                                           
T Consensus       328 vpvia---------------------------------------------------------------------------  332 (450)
T TIGR01302       328 IPVIA---------------------------------------------------------------------------  332 (450)
T ss_pred             CeEEE---------------------------------------------------------------------------
Confidence            78877                                                                           


Q ss_pred             ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862         413 AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF  492 (671)
Q Consensus       413 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g  492 (671)
                                                      +||+..+++++|+|.+|||+||+|.+.+|+.+||++++..+|+++|.|
T Consensus       333 --------------------------------dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~y  380 (450)
T TIGR01302       333 --------------------------------DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQY  380 (450)
T ss_pred             --------------------------------eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEE
Confidence                                            899999999999999999999999877776667766666666666666


Q ss_pred             eCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccc
Q psy3862         493 YGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDT  572 (671)
Q Consensus       493 ~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~  572 (671)
                      +||+|+.||..                                                                     
T Consensus       381 rgm~s~~a~~~---------------------------------------------------------------------  391 (450)
T TIGR01302       381 RGMGSLGAMTK---------------------------------------------------------------------  391 (450)
T ss_pred             eccchHHHHhc---------------------------------------------------------------------
Confidence            66666665542                                                                     


Q ss_pred             hhhhcccccccceeeccccccccccccccchhccc---cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccc
Q psy3862         573 VQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ---LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL  649 (671)
Q Consensus       573 ~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~---~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l  649 (671)
                                                ++.+||+..   .++.+|||+++.||||||++++|++|+|||||+|+|+|+++|
T Consensus       392 --------------------------~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~  445 (450)
T TIGR01302       392 --------------------------GSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSI  445 (450)
T ss_pred             --------------------------cccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcH
Confidence                                      222333322   245799999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3862         650 KELPR  654 (671)
Q Consensus       650 ~el~~  654 (671)
                      +|||+
T Consensus       446 ~~~~~  450 (450)
T TIGR01302       446 DELRE  450 (450)
T ss_pred             HHHhC
Confidence            99984

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=100.00  E-value=1.1e-55  Score=495.15  Aligned_cols=374  Identities=36%  Similarity=0.578  Sum_probs=278.0

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ...+||||||+|+|+++++.| ++||++|+||    +.+.+++||+++||+++|+.+||.++++.||+|+||+|+++|+|
T Consensus         5 ~~~~~t~ddv~l~p~~~~~~~-~~~~~~t~l~----~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~   79 (486)
T PRK05567          5 AKEALTFDDVLLVPAHSEVLP-NDVDLSTQLT----KNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQ   79 (486)
T ss_pred             ccCCcCccceEecccccCcCc-ccccccchhh----hhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHH
Confidence            346899999999999999987 6999999998    78999999999999999999999999999999999999999998


Q ss_pred             HHhhhcC---ccc--ccceEEec-----------------------------C-CChhhHH-------HHHHHH------
Q psy3862          95 KAFAVQN---PDV--IKHVAVSS-----------------------------G-ISAKDLA-------GLKEIL------  126 (671)
Q Consensus        95 ~~~i~~~---p~~--~~~~~v~~-----------------------------G-~~~~d~~-------rl~~l~------  126 (671)
                      .+++++.   .+.  ..+..+..                             | ++..|+.       .+.++|      
T Consensus        80 ~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v  159 (486)
T PRK05567         80 AEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLV  159 (486)
T ss_pred             HHHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCE
Confidence            7776421   110  00111110                             0 0111110       111122      


Q ss_pred             ---------------HhCCCce-EEEeeccCCCChH---HHHHHHHHHHhCCCc------e-EEEEEec----cHHHHHH
Q psy3862         127 ---------------AALPEIE-YICLDVANGYTQT---FVDFVRRIREMYPKH------V-IIAGNVV----TGEMVEE  176 (671)
Q Consensus       127 ---------------~a~~~~d-~Ivld~a~G~~~~---~~~~ik~lr~~~P~~------~-li~g~v~----t~e~a~~  176 (671)
                                     ... +.. .+++| .++....   ..+.++.+  .+|..      . ++++++.    +.+++++
T Consensus       160 ~v~~~~sl~eal~~m~~~-~~~~lpVVD-e~g~lvGiIT~~DLl~~~--~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~  235 (486)
T PRK05567        160 TVPEGTTLEEALELLHEH-RIEKLPVVD-DNGRLKGLITVKDIEKAE--EFPNACKDEQGRLRVGAAVGVGADNEERAEA  235 (486)
T ss_pred             EECCCCCHHHHHHHHHHc-CCCEEEEEc-CCCcEEEEEEhHHhhhhh--hCCCcccccCCCEEEEeecccCcchHHHHHH
Confidence                           111 112 22333 2222111   11222221  24432      2 3455554    4689999


Q ss_pred             HHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccc
Q psy3862         177 LILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  251 (671)
Q Consensus       177 Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr  251 (671)
                      |+++|+|+|++|.+|||+.     ++.+++++|++++        ++|||.|.+++++|+++|||+|+||+||||+||||
T Consensus       236 L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~v--------i~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r  307 (486)
T PRK05567        236 LVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQI--------IAGNVATAEAARALIEAGADAVKVGIGPGSICTTR  307 (486)
T ss_pred             HHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCE--------EEeccCCHHHHHHHHHcCCCEEEECCCCCccccce
Confidence            9999999999999999851     2223333333222        68999999999999999999999999999999999


Q ss_pred             eecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862         252 LKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ  331 (671)
Q Consensus       252 ~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~  331 (671)
                      .++|+|+||++++++|++++++.                                                         
T Consensus       308 ~~~~~g~p~~~~~~~~~~~~~~~---------------------------------------------------------  330 (486)
T PRK05567        308 IVAGVGVPQITAIADAAEAAKKY---------------------------------------------------------  330 (486)
T ss_pred             eecCCCcCHHHHHHHHHHHhccC---------------------------------------------------------
Confidence            99999999999999999988642                                                         


Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGM  411 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~  411 (671)
                      ++|||+                                                                          
T Consensus       331 ~~~via--------------------------------------------------------------------------  336 (486)
T PRK05567        331 GIPVIA--------------------------------------------------------------------------  336 (486)
T ss_pred             CCeEEE--------------------------------------------------------------------------
Confidence            477777                                                                          


Q ss_pred             cccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEE
Q psy3862         412 FAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKL  491 (671)
Q Consensus       412 a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~  491 (671)
                                                       +||+..+++++|++.+|||+||+|.+.+|+.++|++.+..+|+++|.
T Consensus       337 ---------------------------------dGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~  383 (486)
T PRK05567        337 ---------------------------------DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKS  383 (486)
T ss_pred             ---------------------------------cCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEE
Confidence                                             79999999999999999999999986777666666666556666666


Q ss_pred             eeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccccccccc
Q psy3862         492 FYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND  571 (671)
Q Consensus       492 g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~  571 (671)
                      |+||+|..||..                                                                    
T Consensus       384 y~gm~s~~a~~~--------------------------------------------------------------------  395 (486)
T PRK05567        384 YRGMGSLGAMSK--------------------------------------------------------------------  395 (486)
T ss_pred             EeccchHHHHhc--------------------------------------------------------------------
Confidence            666666655532                                                                    


Q ss_pred             chhhhcccccccceeeccccccccccccccchhcc---ccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccc
Q psy3862         572 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTA---QLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASK  648 (671)
Q Consensus       572 ~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~---~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~  648 (671)
                                                 ++.+||+.   ..++.+|||+++.||||||++++|++|.|||||+|+|+|++|
T Consensus       396 ---------------------------~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~  448 (486)
T PRK05567        396 ---------------------------GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAAT  448 (486)
T ss_pred             ---------------------------ccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCc
Confidence                                       22233332   225679999999999999999999999999999999999999


Q ss_pred             ccccccccEEEEeccc
Q psy3862         649 LKELPRRATFIRCTAQ  664 (671)
Q Consensus       649 l~el~~~a~Fvrvt~q  664 (671)
                      |+|||++++|+++|.+
T Consensus       449 ~~~~~~~~~~~~~t~~  464 (486)
T PRK05567        449 IEELREKAEFVRITGA  464 (486)
T ss_pred             HHHHHhcCeEEEEChh
Confidence            9999999999999975

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=100.00  E-value=5e-56  Score=474.37  Aligned_cols=312  Identities=28%  Similarity=0.392  Sum_probs=264.7

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHH
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF  373 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~  373 (671)
                      +||||||+|+|++|++. |+||||+|+|+    +.+.+++|||+||||+||+++||++|++.||||+||+++++|+|.++
T Consensus         1 ~~~~ddv~l~p~~~~~~-~~~vdl~t~l~----~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~   75 (325)
T cd00381           1 GLTFDDVLLVPGYSTVL-PSEVDLSTKLT----KNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEE   75 (325)
T ss_pred             CCCcccEEEeCCCCCCC-HHHceeeEEec----CccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHH
Confidence            58999999999999999 59999999998    35789999999999999999999999999999999999999999999


Q ss_pred             HhcCcccccceeeecccCh---hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccC
Q psy3862         374 AVQNPDVIKHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTS  450 (671)
Q Consensus       374 v~~~~~~~~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~  450 (671)
                      +++.+..+. +..+.+.++   ++++.++++|+|+|+|| ++|||+.+..++++.++..+|.+         .|+.|++.
T Consensus        76 i~~vk~~l~-v~~~~~~~~~~~~~~~~l~eagv~~I~vd-~~~G~~~~~~~~i~~ik~~~p~v---------~Vi~G~v~  144 (325)
T cd00381          76 VRKVKGRLL-VGAAVGTREDDKERAEALVEAGVDVIVID-SAHGHSVYVIEMIKFIKKKYPNV---------DVIAGNVV  144 (325)
T ss_pred             HHHhccCce-EEEecCCChhHHHHHHHHHhcCCCEEEEE-CCCCCcHHHHHHHHHHHHHCCCc---------eEEECCCC
Confidence            988764322 223333333   44566689999999999 89999988888888777777644         24568889


Q ss_pred             chhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCC
Q psy3862         451 PGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGD  526 (671)
Q Consensus       451 t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gd  526 (671)
                      +.+.++ ++++|||+|+||+ ||| ++|+|+.+        .|.|.|+++++.+++..+.++   ..++|.   |.+++|
T Consensus       145 t~~~A~~l~~aGaD~I~vg~-g~G-~~~~t~~~--------~g~g~p~~~~i~~v~~~~~~~~vpVIA~GG---I~~~~d  211 (325)
T cd00381         145 TAEAARDLIDAGADGVKVGI-GPG-SICTTRIV--------TGVGVPQATAVADVAAAARDYGVPVIADGG---IRTSGD  211 (325)
T ss_pred             CHHHHHHHHhcCCCEEEECC-CCC-cCccccee--------CCCCCCHHHHHHHHHHHHhhcCCcEEecCC---CCCHHH
Confidence            988888 6799999999995 999 89999875        578999999999987665543   235553   689999


Q ss_pred             HHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccccccccccc
Q psy3862         527 VNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATF  601 (671)
Q Consensus       527 i~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~  601 (671)
                      ++||++     ||+|++|++++|||++++.                         .+| +++|.||||+|+.+|.+. +.
T Consensus       212 i~kAla~GA~~VmiGt~fa~t~Es~g~~~~-------------------------~~g-~~~~~~~g~~s~~~~~~~-~~  264 (325)
T cd00381         212 IVKALAAGADAVMLGSLLAGTDESPGEYIE-------------------------ING-KRYKEYRGMGSLGAMKKG-GG  264 (325)
T ss_pred             HHHHHHcCCCEEEecchhcccccCCCcEEE-------------------------ECC-eeeeeEecccchhhhhcC-cc
Confidence            999999     9999999999999998522                         234 467899999999999854 45


Q ss_pred             chhccc-cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEe
Q psy3862         602 IRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC  661 (671)
Q Consensus       602 ~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrv  661 (671)
                      +||+.. .++++|||++..||||||++++|+||.|||||+|+|+|+++|+|||++++|+|+
T Consensus       265 ~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~~~~  325 (325)
T cd00381         265 DRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVRI  325 (325)
T ss_pred             ccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeEEeC
Confidence            688764 367899999999999999999999999999999999999999999999999985

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=100.00  E-value=3.9e-54  Score=478.71  Aligned_cols=369  Identities=34%  Similarity=0.502  Sum_probs=282.7

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ...+||||||+|+|+++++.|+++|||+|++|      .+|++||++||||+||+.+||+|||+.||+|+||+||++|+|
T Consensus         8 ~~~~ltfddvll~p~~~~~~~~~~v~~~t~~~------~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~q   81 (475)
T TIGR01303         8 PGYDLTYNDVFMVPSRSEVGSRFDVDLSTADG------TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAV   81 (475)
T ss_pred             CCCCCCccceEEccCccCccCCCceeeccccc------CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHH
Confidence            34689999999999999999877999999986      367999999999999999999999999999999999999999


Q ss_pred             HHhhhcCc---cc-ccceEEecCCC-----------------------------hhhH----------------------
Q psy3862          95 KAFAVQNP---DV-IKHVAVSSGIS-----------------------------AKDL----------------------  119 (671)
Q Consensus        95 ~~~i~~~p---~~-~~~~~v~~G~~-----------------------------~~d~----------------------  119 (671)
                      .+.+++.+   .. ..++.+....+                             .+|+                      
T Consensus        82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~  161 (475)
T TIGR01303        82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPA  161 (475)
T ss_pred             HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCC
Confidence            88775211   00 11111111111                             1111                      


Q ss_pred             ----HHHHHHHHhCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc-----e-EEEEEec----cHHHHHHHHHCCC
Q psy3862         120 ----AGLKEILAALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH-----V-IIAGNVV----TGEMVEELILSGA  182 (671)
Q Consensus       120 ----~rl~~l~~a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~-----~-li~g~v~----t~e~a~~Li~AGa  182 (671)
                          ..+.++|.........++|.. +..   -...+.++.  +.+|..     . .+++.+.    ..++++.|+++|+
T Consensus       162 ~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~--~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV  238 (475)
T TIGR01303       162 DTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRA--TIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV  238 (475)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH--HhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence                111111111111111222211 110   111122221  123321     1 2333332    3699999999999


Q ss_pred             cEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862         183 DVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG  257 (671)
Q Consensus       183 D~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~  257 (671)
                      |+|++|.+|||+     .++++++.+|++++        ++|||+|.+++++|+++|||+|+||+||||+||||.++|+|
T Consensus       239 d~i~~D~a~g~~~~~~~~i~~i~~~~~~~~v--------i~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g  310 (475)
T TIGR01303       239 DVLVIDTAHGHQVKMISAIKAVRALDLGVPI--------VAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVG  310 (475)
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHCCCCeE--------EEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCC
Confidence            999999999997     23344444444332        69999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEe
Q psy3862         258 YPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIA  337 (671)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIa  337 (671)
                      +||++|+++|+++++++                                                         ++||||
T Consensus       311 ~~~~~a~~~~~~~~~~~---------------------------------------------------------~~~via  333 (475)
T TIGR01303       311 RPQFSAVLECAAEARKL---------------------------------------------------------GGHVWA  333 (475)
T ss_pred             CchHHHHHHHHHHHHHc---------------------------------------------------------CCcEEE
Confidence            99999999999999742                                                         578887


Q ss_pred             cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862         338 ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ  417 (671)
Q Consensus       338 a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~  417 (671)
                                                                                                      
T Consensus       334 --------------------------------------------------------------------------------  333 (475)
T TIGR01303       334 --------------------------------------------------------------------------------  333 (475)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEE-eCCeEEEEeeCcc
Q psy3862         418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIE-KDGKKVKLFYGMS  496 (671)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~-~~g~~~k~g~G~~  496 (671)
                                                 +||+..+++++|+|.+|||+||+|.+.+|+.++|++++. .+|.++|.|+||+
T Consensus       334 ---------------------------dGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmg  386 (475)
T TIGR01303       334 ---------------------------DGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMA  386 (475)
T ss_pred             ---------------------------eCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEeccc
Confidence                                       799999999999999999999999999999999999998 8999999999999


Q ss_pred             cHHHHHhhcccccccc-------ccCCceE----eeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         497 STTAMDKHAGGVAEYR-------AAEGKTV----QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       497 q~tAi~~~a~~~~~y~-------~~~G~~v----~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      |..||.. .+..++|+       .++|...    .++|+|++.+.|..|+||+++++.|+|...++|++.+++|++++..
T Consensus       387 s~~a~~~-~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~~  465 (475)
T TIGR01303       387 SKRAVVA-RTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSGA  465 (475)
T ss_pred             CHHHHhh-ccccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEEEEccc
Confidence            9999974 23456775       3467653    3588999999999999999999999999999999999999998775

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=7.1e-53  Score=456.81  Aligned_cols=325  Identities=36%  Similarity=0.619  Sum_probs=283.8

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ...+||||||+|+|+++++.| ++||++|+|+    +.+.+++||+++||+++++.+||.|+|++||||+||+++++|+|
T Consensus         6 ~~~~ltfdDvll~P~~s~~~~-~~vdl~t~lt----~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l   80 (404)
T PRK06843          6 TKEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ   80 (404)
T ss_pred             cccccCccceEEccCCCccCH-Hhccccchhh----hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHH
Confidence            346899999999999999985 8999999998    78999999999999999999999999999999999999999998


Q ss_pred             HHhhhcC--------------------------------------------cc----cccc--eEEecCCChhhHHHHHH
Q psy3862          95 KAFAVQN--------------------------------------------PD----VIKH--VAVSSGISAKDLAGLKE  124 (671)
Q Consensus        95 ~~~i~~~--------------------------------------------p~----~~~~--~~v~~G~~~~d~~rl~~  124 (671)
                      .+++++.                                            |.    ..++  +++++|+.+++++++++
T Consensus        81 ~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~  160 (404)
T PRK06843         81 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEE  160 (404)
T ss_pred             HHHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHH
Confidence            8777421                                            11    0111  33456677777899999


Q ss_pred             HHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862         125 ILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS  204 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~  204 (671)
                      ++++  ++|+|++|.+|+++..+.++++++|+.||+..+++|++.|.+.++.|+++|||+|                   
T Consensus       161 lv~a--GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I-------------------  219 (404)
T PRK06843        161 LVKA--HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCL-------------------  219 (404)
T ss_pred             HHhc--CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEE-------------------
Confidence            9999  8999999999999999999999999999986666666666666665555555555                   


Q ss_pred             cchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhh
Q psy3862         205 DFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTA  284 (671)
Q Consensus       205 ~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (671)
                                                        +||+||||+||||.++|+|+||++++++|++++++           
T Consensus       220 ----------------------------------~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~-----------  254 (404)
T PRK06843        220 ----------------------------------KVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKN-----------  254 (404)
T ss_pred             ----------------------------------EECCCCCcCCcceeecCCCCChHHHHHHHHHHHhh-----------
Confidence                                              89999999999999999999999999999998864           


Q ss_pred             ccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccC
Q psy3862         285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY  364 (671)
Q Consensus       285 ~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~  364 (671)
                                                                    .++|||+                           
T Consensus       255 ----------------------------------------------~~vpVIA---------------------------  261 (404)
T PRK06843        255 ----------------------------------------------TNICIIA---------------------------  261 (404)
T ss_pred             ----------------------------------------------cCCeEEE---------------------------
Confidence                                                          2478887                           


Q ss_pred             CCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCcee
Q psy3862         365 YTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV  444 (671)
Q Consensus       365 ~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  444 (671)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (404)
T PRK06843        262 --------------------------------------------------------------------------------  261 (404)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc----------cc
Q psy3862         445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR----------AA  514 (671)
Q Consensus       445 ~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~----------~~  514 (671)
                      +||+..+++++|+|.+|||+||+|....|+.+||++++..+|+++|.|+||+|..||..  +..++|+          .+
T Consensus       262 dGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~--~~~~ry~~~~~~~~~~~v~  339 (404)
T PRK06843        262 DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR--GSKSRYFQLENNEPKKLVP  339 (404)
T ss_pred             eCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhc--cccccccccccccccccCC
Confidence            89999999999999999999999999999999999999999999999999999999974  2345554          36


Q ss_pred             CCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         515 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       515 ~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      +|..+.++|.|++.+.+..++||+++++.|+|+..++|++.+++|+.++.+
T Consensus       340 eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~a~fv~~t~~  390 (404)
T PRK06843        340 EGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS  390 (404)
T ss_pred             CccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhcCeEEEEchh
Confidence            788888999999999999999999999999999999999999999998774

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=1.3e-52  Score=466.84  Aligned_cols=368  Identities=35%  Similarity=0.497  Sum_probs=280.3

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+||||||+|+|+++++.|+++|||+|++      ++.|++||++||||+||+.+||.+|++.||+|+||+|+++++|.
T Consensus        10 ~~~ltfddvll~p~~~~~~~~~~v~~~t~~------~~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~   83 (479)
T PRK07807         10 AYDLTYDDVFLVPSRSDVGSRFDVDLSTAD------GTGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVA   83 (479)
T ss_pred             CcCcCccceEecccccCccCCCceecccCC------CCccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHH
Confidence            478999999999999999987799999975      56899999999999999999999999999999999999999988


Q ss_pred             HhhhcCc--c-c-ccceEEecCC------------------------------ChhhH----------------------
Q psy3862          96 AFAVQNP--D-V-IKHVAVSSGI------------------------------SAKDL----------------------  119 (671)
Q Consensus        96 ~~i~~~p--~-~-~~~~~v~~G~------------------------------~~~d~----------------------  119 (671)
                      +.+++..  + . ..++.+....                              +.+|+                      
T Consensus        84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~itV~~  163 (479)
T PRK07807         84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDLVTLPA  163 (479)
T ss_pred             HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCceEECC
Confidence            7764211  0 0 0111111111                              11111                      


Q ss_pred             ----HHHHHHHHhCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc-----eE-EEEEe----ccHHHHHHHHHCCC
Q psy3862         120 ----AGLKEILAALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH-----VI-IAGNV----VTGEMVEELILSGA  182 (671)
Q Consensus       120 ----~rl~~l~~a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~-----~l-i~g~v----~t~e~a~~Li~AGa  182 (671)
                          ..+.++|.........++|.. +..   -...+.++.  +.+|..     .+ +++.+    ...+.++.|+++|+
T Consensus       164 d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~--~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGv  240 (479)
T PRK07807        164 GTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRA--TIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGV  240 (479)
T ss_pred             CCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHH--hhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCC
Confidence                111111111111111222211 110   011111111  113211     11 22222    23589999999999


Q ss_pred             cEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862         183 DVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG  257 (671)
Q Consensus       183 D~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~  257 (671)
                      |+|++|.+|||+     .++++++++|++.+        +||||+|.+++++|+++|||+|||||||||+||||.++|+|
T Consensus       241 d~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v--------~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~  312 (479)
T PRK07807        241 DVLVVDTAHGHQEKMLEALRAVRALDPGVPI--------VAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG  312 (479)
T ss_pred             CEEEEeccCCccHHHHHHHHHHHHHCCCCeE--------EeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc
Confidence            999999999996     24456666665433        69999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEe
Q psy3862         258 YPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIA  337 (671)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIa  337 (671)
                      +||+|||++|+++|+++                                                         ++|+||
T Consensus       313 ~p~~~av~~~~~~~~~~---------------------------------------------------------~~~via  335 (479)
T PRK07807        313 RPQFSAVLECAAAAREL---------------------------------------------------------GAHVWA  335 (479)
T ss_pred             hhHHHHHHHHHHHHHhc---------------------------------------------------------CCcEEe
Confidence            99999999999999753                                                         577877


Q ss_pred             cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862         338 ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ  417 (671)
Q Consensus       338 a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~  417 (671)
                                                                                                      
T Consensus       336 --------------------------------------------------------------------------------  335 (479)
T PRK07807        336 --------------------------------------------------------------------------------  335 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEE-eCCeEEEEeeCcc
Q psy3862         418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIE-KDGKKVKLFYGMS  496 (671)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~-~~g~~~k~g~G~~  496 (671)
                                                 +||+..+++++++|.+|||+||+|.+++|+.+++++++. .+|.++|.|+||+
T Consensus       336 ---------------------------~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmg  388 (479)
T PRK07807        336 ---------------------------DGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMA  388 (479)
T ss_pred             ---------------------------cCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccc
Confidence                                       799999999999999999999999999999999999988 8999999999999


Q ss_pred             cHHHHHhhcccccccc-------ccCCceEe----eecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         497 STTAMDKHAGGVAEYR-------AAEGKTVQ----VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       497 q~tAi~~~a~~~~~y~-------~~~G~~v~----i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      |..|+.+. ...++|+       .++|....    ++|.|++.+.+..|.|++++++.|+|+..++|++.++.|+.++..
T Consensus       389 s~~a~~~~-~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~~  467 (479)
T PRK07807        389 SARAVAAR-TAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSAA  467 (479)
T ss_pred             cHHHHhcc-cCccchhhhcccCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECcc
Confidence            99999752 2334554       25664443    478999999999999999999999999999999999999998775

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=4.7e-53  Score=472.87  Aligned_cols=382  Identities=27%  Similarity=0.397  Sum_probs=286.5

Q ss_pred             cccccCCCCCceEEecCCcC--CCCCCcceeeeeeec--ccCC-CcccCceEEecCCCccccHHHHHHHHHcCCeEEeec
Q psy3862          13 IINDIKLDFKDVMLRPKRST--LKSRSEVDITRTFTF--RNSG-KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK   87 (671)
Q Consensus        13 ~~~~~~l~fdDv~lvP~~~~--~~~~~~Vdlst~lt~--r~~~-~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~   87 (671)
                      ++++.+||||||+|+|++++  +.| ++|||+|+||+  +-+. ++.|++|+++++|+++++..||++|++.||||+||+
T Consensus         4 ~~~~~~~tfddvll~P~~~~~~~~~-~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~   82 (502)
T PRK07107          4 YFEEPSRTFSEYLLVPGLSSKECVP-ANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFG   82 (502)
T ss_pred             eecCCCccccceEEccCCCCCCcCc-cceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeC
Confidence            45678999999999999997  465 79999999981  0111 888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhcCcc-----cccceEEe--------------------------------cC-CChhhHH--------H
Q psy3862          88 YYTLEEWKAFAVQNPD-----VIKHVAVS--------------------------------SG-ISAKDLA--------G  121 (671)
Q Consensus        88 n~~~Eeq~~~i~~~p~-----~~~~~~v~--------------------------------~G-~~~~d~~--------r  121 (671)
                      |+++|+|.+++++..+     ...+..+.                                .| ++..|+.        .
T Consensus        83 n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~  162 (502)
T PRK07107         83 SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTK  162 (502)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCC
Confidence            9999999877531100     00000000                                00 1111111        1


Q ss_pred             HHHHHH----------------------hCCCceEEEeeccCCCC---hHHHHHHHHHHHhCCCc------eE-EEEEec
Q psy3862         122 LKEILA----------------------ALPEIEYICLDVANGYT---QTFVDFVRRIREMYPKH------VI-IAGNVV  169 (671)
Q Consensus       122 l~~l~~----------------------a~~~~d~Ivld~a~G~~---~~~~~~ik~lr~~~P~~------~l-i~g~v~  169 (671)
                      +.++|.                      ...-....++|.. +..   -...+.++  ++.||+.      .+ +++.+.
T Consensus       163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk--~~~~P~a~~d~~grL~V~~av~  239 (502)
T PRK07107        163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDS--HKENPLELLDSSKRYVVGAGIN  239 (502)
T ss_pred             HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHh--cccChhhhhhhccCeeeeeccC
Confidence            222332                      1111111222211 111   01111222  1235532      23 333443


Q ss_pred             ---cHHHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCc-chhhhhccccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         170 ---TGEMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSD-FFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       170 ---t~e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~-~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                         ..+++++|+++|+|+|++|.+|||+     .++++++.+|. +.+        .||||+|.+++++|+++|||+|||
T Consensus       240 ~~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V--------~aGnV~t~e~a~~li~aGAd~I~v  311 (502)
T PRK07107        240 TRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKV--------GAGNVVDREGFRYLAEAGADFVKV  311 (502)
T ss_pred             hhhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceE--------EeccccCHHHHHHHHHcCCCEEEE
Confidence               2589999999999999999999996     23445544442 222        699999999999999999999999


Q ss_pred             cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862         241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~  320 (671)
                      ||||||+||||+++|+|+||+|||++|+++++++                                              
T Consensus       312 g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~----------------------------------------------  345 (502)
T PRK07107        312 GIGGGSICITREQKGIGRGQATALIEVAKARDEY----------------------------------------------  345 (502)
T ss_pred             CCCCCcCcccccccCCCccHHHHHHHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999998642                                              


Q ss_pred             eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHH
Q psy3862         321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG  400 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~  400 (671)
                        ++.++   .++|||+                                                               
T Consensus       346 --~~~~g---~~~~via---------------------------------------------------------------  357 (502)
T PRK07107        346 --FEETG---VYIPICS---------------------------------------------------------------  357 (502)
T ss_pred             --HhhcC---CcceEEE---------------------------------------------------------------
Confidence              00000   1388888                                                               


Q ss_pred             cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCc
Q psy3862         401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                                                                  +||+..++|++|+|.+|||+||+|.+.+|+.++|++
T Consensus       358 --------------------------------------------dgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~  393 (502)
T PRK07107        358 --------------------------------------------DGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTN  393 (502)
T ss_pred             --------------------------------------------cCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCc
Confidence                                                        899999999999999999999999999999999999


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhcc----ccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAG----GVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR  556 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~----~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~  556 (671)
                      ++..+|+++|.|+||+|..||.. ..    ...++..++|....++|+|++.+.+..++||++++++|+|+..++|++.+
T Consensus       394 ~~~~~g~~~k~yrgm~s~~a~~~-~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~  472 (502)
T PRK07107        394 KVNINGNYMKEYWGEGSNRARNW-QRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK  472 (502)
T ss_pred             EEEECCEEEEEeecccCHhhhhc-cccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence            99999999999999999999941 00    11123467898888999999999999999999999999999999999999


Q ss_pred             ceEEEeccc
Q psy3862         557 ATFIRCTAQ  565 (671)
Q Consensus       557 a~fv~~~~~  565 (671)
                      ++|+.++.+
T Consensus       473 ~~f~~~t~~  481 (502)
T PRK07107        473 AKITLVSST  481 (502)
T ss_pred             CeEEEECcc
Confidence            999998775

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=3.7e-50  Score=433.90  Aligned_cols=295  Identities=21%  Similarity=0.263  Sum_probs=237.6

Q ss_pred             cceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc---
Q psy3862         286 AQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH---  362 (671)
Q Consensus       286 ~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih---  362 (671)
                      |+-.....+|+||||+|+|+||++.| +||||+|++.     .+++++||+.+|||+||+++||.+++++||||+||   
T Consensus         7 ~~~~~~~~~~~fddV~lvp~~~~~~~-~dvdls~~~~-----~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~g   80 (368)
T PRK08649          7 GRGKTARRAYGLDEIAIVPSRRTRDP-EDVSTSWQID-----AYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEG   80 (368)
T ss_pred             cCCccccccCCcceEEEeCCCCCCCH-HHceeeeeec-----ceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecc
Confidence            34445677999999999999999999 9999999885     78899999999999999999999999999999999   


Q ss_pred             ---cCCCHHHHHHHHhcCc------------------cc----ccceeeecc-----cCh----hhHHHHHHcCCcEEEE
Q psy3862         363 ---KYYTLEEWKAFAVQNP------------------DV----IKHVADGGC-----TSP----GDVAKAMGAGADFVML  408 (671)
Q Consensus       363 ---r~~~~e~~~~~v~~~~------------------~~----~~~v~~~~~-----~~~----~~~~~l~~aG~d~i~i  408 (671)
                         ||+++|+|.+++.+.+                  ++    ++.+..++.     .++    +..+.++++|+|+|++
T Consensus        81 l~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~v  160 (368)
T PRK08649         81 LWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVI  160 (368)
T ss_pred             ccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEE
Confidence               9999999999987531                  11    111221111     122    3345558999999999


Q ss_pred             cc----ccccccc-cccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEE
Q psy3862         409 GG----MFAGHDQ-SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       409 d~----~a~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      ++    .+|+|+. +..++.+.++.          . +-.|++||+.+.+.++ ++++|||+||||+ |+| +.|||+.+
T Consensus       161 hgrt~~~~h~~~~~~~~~i~~~ik~----------~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~-G~G-s~~~t~~~  227 (368)
T PRK08649        161 QGTVVSAEHVSKEGEPLNLKEFIYE----------L-DVPVIVGGCVTYTTALHLMRTGAAGVLVGI-GPG-AACTSRGV  227 (368)
T ss_pred             eccchhhhccCCcCCHHHHHHHHHH----------C-CCCEEEeCCCCHHHHHHHHHcCCCEEEECC-CCC-cCCCCccc
Confidence            75    4566665 45554333332          1 1123557899999988 6799999999996 999 89999865


Q ss_pred             EeCCeEEEEeeCcccHHHHHhhccccccccccC-CceEe------eecCCCHHHHHH-----HHHhhHhHhccccCcccc
Q psy3862         483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAE-GKTVQ------VPYRGDVNDTVQ-----DILGGLRSACTYVGASKL  550 (671)
Q Consensus       483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~-G~~v~------i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i  550 (671)
                              +|+|+||++|+.+|+.++++|..+. |++++      |+++||++|||+     ||+|++|++++|||++. 
T Consensus       228 --------~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~-  298 (368)
T PRK08649        228 --------LGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRG-  298 (368)
T ss_pred             --------CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcc-
Confidence                    5789999999999987766664333 23333      699999999999     99999999999988871 


Q ss_pred             cccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHH
Q psy3862         551 KELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTV  630 (671)
Q Consensus       551 ~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l  630 (671)
                                                        +||||+|.                ++++|||++.+||||||++++|
T Consensus       299 ----------------------------------~~~gm~s~----------------~~~~~eg~~~~~~~~g~~~~~~  328 (368)
T PRK08649        299 ----------------------------------WHWGMAAP----------------HPSLPRGTRIKVGTTGSLEQIL  328 (368)
T ss_pred             ----------------------------------cccCcccC----------------CCcCCCceEEeCCCcCcHHHHh
Confidence                                              68999995                6789999999999999999999


Q ss_pred             H----------HHHHHHhhhccccCcccccccccccEEE
Q psy3862         631 Q----------DILGGLRSACTYVGASKLKELPRRATFI  659 (671)
Q Consensus       631 ~----------~l~gGLrs~m~y~Ga~~l~el~~~a~Fv  659 (671)
                      +          ||+|||||+|+|+|+++|+|||+ .++|
T Consensus       329 ~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~-~~~~  366 (368)
T PRK08649        329 FGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQK-VEVV  366 (368)
T ss_pred             cCcccccchHHHHHHHHHHHHHhcCCCcHHHHhh-cCeE
Confidence            9          99999999999999999999986 4554

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=100.00  E-value=5.6e-50  Score=424.82  Aligned_cols=303  Identities=20%  Similarity=0.322  Sum_probs=258.4

Q ss_pred             ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHH
Q psy3862         293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA  372 (671)
Q Consensus       293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~  372 (671)
                      .+|+||||+|+|++++..||+||||+++|.     ..+++.|++++||||+++.+||+.++++|+++++|| +++|+|.+
T Consensus         3 ~~l~Fddv~lv~~~lp~~s~~dvdlst~~~-----~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~   76 (326)
T PRK05458          3 KVFDYEDIQLIPNKCIVNSRSECDTSVTLG-----PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FDPEARIP   76 (326)
T ss_pred             CccCccceEEecCCCCCCCHHHcccceEEC-----CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CCHHHHHH
Confidence            579999999999999999999999999996     568999999999999999999999999999999999 79999999


Q ss_pred             HHhcC-cccccceeeecccCh---hhHHHHHHcCC--cEEEEccccccccccccccccccccccccccccccccCceeec
Q psy3862         373 FAVQN-PDVIKHVADGGCTSP---GDVAKAMGAGA--DFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDG  446 (671)
Q Consensus       373 ~v~~~-~~~~~~v~~~~~~~~---~~~~~l~~aG~--d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  446 (671)
                      |+++. |+.+ .+..+.++++   ++..+|++||+  |+|+|| ++|||+....++++.++..||.+         .|++
T Consensus        77 ~~r~~~~~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD-~a~gh~~~~~e~I~~ir~~~p~~---------~vi~  145 (326)
T PRK05458         77 FIKDMHEQGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITID-IAHGHSDSVINMIQHIKKHLPET---------FVIA  145 (326)
T ss_pred             HHHhcccccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEE-CCCCchHHHHHHHHHHHhhCCCC---------eEEE
Confidence            99875 4444 5666666665   45677799965  999999 99999999999998888888866         4678


Q ss_pred             cccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcc--cHHHHHhhccccccccccCCceEeeec
Q psy3862         447 GCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMS--STTAMDKHAGGVAEYRAAEGKTVQVPY  523 (671)
Q Consensus       447 G~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~--q~tAi~~~a~~~~~y~~~~G~~v~i~~  523 (671)
                      |+|.|.+.++ ++++|||+++||+ ++| +.|+|+..        .|.|.|  |++++.+++....--..++|+   |++
T Consensus       146 g~V~t~e~a~~l~~aGad~i~vg~-~~G-~~~~t~~~--------~g~~~~~w~l~ai~~~~~~~~ipVIAdGG---I~~  212 (326)
T PRK05458        146 GNVGTPEAVRELENAGADATKVGI-GPG-KVCITKIK--------TGFGTGGWQLAALRWCAKAARKPIIADGG---IRT  212 (326)
T ss_pred             EecCCHHHHHHHHHcCcCEEEECC-CCC-cccccccc--------cCCCCCccHHHHHHHHHHHcCCCEEEeCC---CCC
Confidence            8899999988 6799999999996 999 88999864        466788  899999887654333356664   799


Q ss_pred             CCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccc
Q psy3862         524 RGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRR  598 (671)
Q Consensus       524 ~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~  598 (671)
                      ++|++|||+     ||+|++|++++|+||+.+.                         .+| +.+|.||||.+.  +.  
T Consensus       213 ~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~-------------------------~~g-~~~k~y~g~~~~--~~--  262 (326)
T PRK05458        213 HGDIAKSIRFGATMVMIGSLFAGHEESPGKTVE-------------------------IDG-KLYKEYFGSASE--FQ--  262 (326)
T ss_pred             HHHHHHHHHhCCCEEEechhhcCCccCCCceee-------------------------ecc-hhHHHhhCcHhh--hc--
Confidence            999999999     9999999999999999522                         124 467899997653  11  


Q ss_pred             cccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         599 ATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       599 ~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                             . .+++.+||++..|||||++.++|+++.+||||+|+|+|+++|+|||+ ++|++||++
T Consensus       263 -------~-~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~-~~~v~~~~~  319 (326)
T PRK05458        263 -------K-GEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK-VDYVIVKNS  319 (326)
T ss_pred             -------c-ccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc-CCEEEEecC
Confidence                   1 12344599999999999999999999999999999999999999995 999999987

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=100.00  E-value=1.8e-47  Score=404.12  Aligned_cols=313  Identities=36%  Similarity=0.615  Sum_probs=271.5

Q ss_pred             CCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHHhh
Q psy3862          19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFA   98 (671)
Q Consensus        19 l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i   98 (671)
                      |+||||+|+|+++|..++++|||+++|+     ++++++||++++|+++.+.+||+++++.|+++++|+ +++|+|.+|+
T Consensus         2 ~~FddV~lvp~~lp~~s~~dVdlst~~~-----~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfv   75 (321)
T TIGR01306         2 FDYEDIQLIPNKCIVNSRSECDTSVTLG-----KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFI   75 (321)
T ss_pred             CCcccEEEecCCCCCCCHHHceeeEEEC-----CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHH
Confidence            7999999999999999999999999995     789999999999999889999999999999999999 7999999998


Q ss_pred             hcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHH
Q psy3862          99 VQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELI  178 (671)
Q Consensus        99 ~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li  178 (671)
                      ++.......+.+++|.+++|.+|+..++++...+|++++|.+|||+...+++++++++.+|...+++||+.|.+.++.|+
T Consensus        76 rk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~  155 (321)
T TIGR01306        76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELE  155 (321)
T ss_pred             HhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHH
Confidence            76532222567788999999999999999843479999999999999999999999988886556665555555555554


Q ss_pred             HCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCc
Q psy3862         179 LSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGY  258 (671)
Q Consensus       179 ~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~  258 (671)
                                                                           ++|||+|+||+|||++||||+++|+|+
T Consensus       156 -----------------------------------------------------~aGad~I~V~~G~G~~~~tr~~~g~g~  182 (321)
T TIGR01306       156 -----------------------------------------------------NAGADATKVGIGPGKVCITKIKTGFGT  182 (321)
T ss_pred             -----------------------------------------------------HcCcCEEEECCCCCccccceeeeccCC
Confidence                                                                 455555599999999999999999998


Q ss_pred             c--hhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceE
Q psy3862         259 P--QFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPII  336 (671)
Q Consensus       259 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiI  336 (671)
                      |  |++||++|++++                                                            ++|||
T Consensus       183 ~~~~l~ai~ev~~a~------------------------------------------------------------~~pVI  202 (321)
T TIGR01306       183 GGWQLAALRWCAKAA------------------------------------------------------------RKPII  202 (321)
T ss_pred             CchHHHHHHHHHHhc------------------------------------------------------------CCeEE
Confidence            7  999999999754                                                            26888


Q ss_pred             ecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccc
Q psy3862         337 AANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHD  416 (671)
Q Consensus       337 aa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~  416 (671)
                      +                                                                               
T Consensus       203 a-------------------------------------------------------------------------------  203 (321)
T TIGR01306       203 A-------------------------------------------------------------------------------  203 (321)
T ss_pred             E-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             ccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcc
Q psy3862         417 QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMS  496 (671)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~  496 (671)
                                                  +||+...+|++|+|.+|||+||+|.+.+|+.++|++.+..+|+++|.|+|+.
T Consensus       204 ----------------------------dGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~  255 (321)
T TIGR01306       204 ----------------------------DGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSA  255 (321)
T ss_pred             ----------------------------ECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCch
Confidence                                        8999999999999999999999999999999999999999999999999954


Q ss_pred             cHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         497 STTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       497 q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                        +++.+  + ..+  ..+|..+.++|+|++.+.+..++|++++++.++|...++|++ +++|+.++..
T Consensus       256 --~~~~~--~-~~~--~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~~  316 (321)
T TIGR01306       256 --SEFQK--G-EHK--NVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKNS  316 (321)
T ss_pred             --hhhcc--c-ccc--cccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEecC
Confidence              34432  1 111  247888889999999999999999999999999999999999 7889987664

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=100.00  E-value=7.5e-45  Score=388.40  Aligned_cols=319  Identities=43%  Similarity=0.664  Sum_probs=272.6

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHHh
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF   97 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~   97 (671)
                      +||||||+|+|+++++. +++|||+|+|+    +.+.+++||+++||+++++.+||++++++||+|+||+++++|+|.++
T Consensus         1 ~~~~ddv~l~p~~~~~~-~~~vdl~t~l~----~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~   75 (325)
T cd00381           1 GLTFDDVLLVPGYSTVL-PSEVDLSTKLT----KNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEE   75 (325)
T ss_pred             CCCcccEEEeCCCCCCC-HHHceeeEEec----CccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHH
Confidence            58999999999999987 58999999998    57999999999999999999999999999999999999999998887


Q ss_pred             hhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHH
Q psy3862          98 AVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEEL  177 (671)
Q Consensus        98 i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~L  177 (671)
                      +++.... ..+..+++..+++.+++..++++  ++++|.+|.+||++..+.+.++++++.+|...+++|++.|.+.++.|
T Consensus        76 i~~vk~~-l~v~~~~~~~~~~~~~~~~l~ea--gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l  152 (325)
T cd00381          76 VRKVKGR-LLVGAAVGTREDDKERAEALVEA--GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL  152 (325)
T ss_pred             HHHhccC-ceEEEecCCChhHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH
Confidence            7654311 12334455566677899999998  78999999999999889999999988777555555565555555555


Q ss_pred             HHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccC
Q psy3862         178 ILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVG  257 (671)
Q Consensus       178 i~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~  257 (671)
                      +++|||+|                                                     +||+|||+.|+||.++|+|
T Consensus       153 ~~aGaD~I-----------------------------------------------------~vg~g~G~~~~t~~~~g~g  179 (325)
T cd00381         153 IDAGADGV-----------------------------------------------------KVGIGPGSICTTRIVTGVG  179 (325)
T ss_pred             HhcCCCEE-----------------------------------------------------EECCCCCcCcccceeCCCC
Confidence            55555555                                                     8999999999999999999


Q ss_pred             cchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEe
Q psy3862         258 YPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIA  337 (671)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIa  337 (671)
                      +||++++.+|++++++.                                                         ++|||+
T Consensus       180 ~p~~~~i~~v~~~~~~~---------------------------------------------------------~vpVIA  202 (325)
T cd00381         180 VPQATAVADVAAAARDY---------------------------------------------------------GVPVIA  202 (325)
T ss_pred             CCHHHHHHHHHHHHhhc---------------------------------------------------------CCcEEe
Confidence            99999999999988642                                                         578887


Q ss_pred             cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862         338 ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ  417 (671)
Q Consensus       338 a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~  417 (671)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (325)
T cd00381         203 --------------------------------------------------------------------------------  202 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCccc
Q psy3862         418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSS  497 (671)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q  497 (671)
                                                 +||+...+++++++.+|||+||+|....++.+|+++.+..+|.++|.++||++
T Consensus       203 ---------------------------~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s  255 (325)
T cd00381         203 ---------------------------DGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGS  255 (325)
T ss_pred             ---------------------------cCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccc
Confidence                                       79988889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccc-----ccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEE
Q psy3862         498 TTAMDKHAGGV-----AEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR  561 (671)
Q Consensus       498 ~tAi~~~a~~~-----~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~  561 (671)
                      ..|+.+.+..+     .++..++|....++|+|++.+.+..++|++++++.++|+..++|++.++.|+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~~~  324 (325)
T cd00381         256 LGAMKKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVR  324 (325)
T ss_pred             hhhhhcCccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeEEe
Confidence            99997543221     12335778888899999999999999999999999999999999999988864

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=100.00  E-value=1.8e-41  Score=359.92  Aligned_cols=314  Identities=35%  Similarity=0.609  Sum_probs=275.3

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA   96 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~   96 (671)
                      .+|+||||+|+|+++|..++++|||+++|+     ++++++|+++++|++..+.+||.++++.|+++++|+ +++|+|.+
T Consensus         3 ~~l~Fddv~lv~~~lp~~s~~dvdlst~~~-----~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~   76 (326)
T PRK05458          3 KVFDYEDIQLIPNKCIVNSRSECDTSVTLG-----PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FDPEARIP   76 (326)
T ss_pred             CccCccceEEecCCCCCCCHHHcccceEEC-----CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CCHHHHHH
Confidence            589999999999999999999999999995     779999999999999889999999999999999999 89999999


Q ss_pred             hhhcC-cccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHH
Q psy3862          97 FAVQN-PDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVE  175 (671)
Q Consensus        97 ~i~~~-p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~  175 (671)
                      |+++. |..+ .+.+++|+++++.+++.+++++..++|+|.+|.+|||++...++++++|+.+|+..+++|++.|.+.++
T Consensus        77 ~~r~~~~~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~  155 (326)
T PRK05458         77 FIKDMHEQGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVR  155 (326)
T ss_pred             HHHhcccccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHH
Confidence            99654 4323 455678888888999999999843449999999999999999999999999998788888887777777


Q ss_pred             HHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862         176 ELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG  255 (671)
Q Consensus       176 ~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g  255 (671)
                      .|+++|||++                                                     +||+++|++|+||.++|
T Consensus       156 ~l~~aGad~i-----------------------------------------------------~vg~~~G~~~~t~~~~g  182 (326)
T PRK05458        156 ELENAGADAT-----------------------------------------------------KVGIGPGKVCITKIKTG  182 (326)
T ss_pred             HHHHcCcCEE-----------------------------------------------------EECCCCCcccccccccC
Confidence            7777777666                                                     89999999999999999


Q ss_pred             cCcc--hhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862         256 VGYP--QFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV  333 (671)
Q Consensus       256 v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i  333 (671)
                      +++|  |++++.+|++++                                                            ++
T Consensus       183 ~~~~~w~l~ai~~~~~~~------------------------------------------------------------~i  202 (326)
T PRK05458        183 FGTGGWQLAALRWCAKAA------------------------------------------------------------RK  202 (326)
T ss_pred             CCCCccHHHHHHHHHHHc------------------------------------------------------------CC
Confidence            9999  999999998654                                                            27


Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA  413 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~  413 (671)
                      |||+                                                                            
T Consensus       203 pVIA----------------------------------------------------------------------------  206 (326)
T PRK05458        203 PIIA----------------------------------------------------------------------------  206 (326)
T ss_pred             CEEE----------------------------------------------------------------------------
Confidence            8888                                                                            


Q ss_pred             cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862         414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~  493 (671)
                                                     +||+...++++|++.+|||+|++|....|+.++|++++..+|+++|.++
T Consensus       207 -------------------------------dGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~  255 (326)
T PRK05458        207 -------------------------------DGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYF  255 (326)
T ss_pred             -------------------------------eCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhh
Confidence                                           7999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      |+.  +...+  +  .++ ..+|..+.++|+|++.|.|..+.+++++++.++|...++|++. ++|+.++..
T Consensus       256 g~~--~~~~~--~--~~~-~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~-~~~v~~~~~  319 (326)
T PRK05458        256 GSA--SEFQK--G--EYK-NVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK-VDYVIVKNS  319 (326)
T ss_pred             CcH--hhhcc--c--ccc-ccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc-CCEEEEecC
Confidence            853  33321  1  112 2478888899999999999999999999999999999999994 889887664

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=100.00  E-value=5.1e-42  Score=381.44  Aligned_cols=246  Identities=25%  Similarity=0.308  Sum_probs=206.1

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHH
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF  373 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~  373 (671)
                      +||||||||+|++|++.| ++|||+++|+    +++.+++|||||||||||+.|||++|++.||+|+||+|+++|+|.++
T Consensus         1 ~~t~ddv~l~p~~~~~~~-~~~~~~~~~~----~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~   75 (450)
T TIGR01302         1 GLTFDDVLLLPGFIDVEP-DDVDLSTRIT----RNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ   75 (450)
T ss_pred             CCCccceEecccccccCc-cccccccccc----cccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH
Confidence            599999999999999999 6999999998    68999999999999999999999999999999999999999999998


Q ss_pred             HhcCccc-------------------------------c--------------------------------------c--
Q psy3862         374 AVQNPDV-------------------------------I--------------------------------------K--  382 (671)
Q Consensus       374 v~~~~~~-------------------------------~--------------------------------------~--  382 (671)
                      ++++.+.                               +                                      +  
T Consensus        76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~  155 (450)
T TIGR01302        76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVI  155 (450)
T ss_pred             HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCE
Confidence            8764210                               0                                      0  


Q ss_pred             --------------------------------------------------------c--eeeecccCh---hhHHHHHHc
Q psy3862         383 --------------------------------------------------------H--VADGGCTSP---GDVAKAMGA  401 (671)
Q Consensus       383 --------------------------------------------------------~--v~~~~~~~~---~~~~~l~~a  401 (671)
                                                                              +  +.++.++++   ++...|+++
T Consensus       156 ~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~a  235 (450)
T TIGR01302       156 TVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKA  235 (450)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHh
Confidence                                                                    0  000111222   445666899


Q ss_pred             CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862         402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                      |+|+|+|| ++|||+.+..+.++.++..||.+.         |++||+.|.+.++ ++++|||+|+||+ ||| ++|+||
T Consensus       236 G~d~I~vd-~a~g~~~~~~~~i~~i~~~~~~~~---------vi~G~v~t~~~a~~l~~aGad~i~vg~-g~G-~~~~t~  303 (450)
T TIGR01302       236 GVDVIVID-SSHGHSIYVIDSIKEIKKTYPDLD---------IIAGNVATAEQAKALIDAGADGLRVGI-GPG-SICTTR  303 (450)
T ss_pred             CCCEEEEE-CCCCcHhHHHHHHHHHHHhCCCCC---------EEEEeCCCHHHHHHHHHhCCCEEEECC-CCC-cCCccc
Confidence            99999999 999999999999998888888663         5778899999998 6799999999996 999 999998


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKE  552 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e  552 (671)
                      .+        .|+|+||++|+.+|+..+.++   ..++|+   |+++|||+|||+     ||+|++|||++|+||++   
T Consensus       304 ~~--------~~~g~p~~~~i~~~~~~~~~~~vpviadGG---i~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~---  369 (450)
T TIGR01302       304 IV--------AGVGVPQITAVYDVAEYAAQSGIPVIADGG---IRYSGDIVKALAAGADAVMLGSLLAGTTESPGEY---  369 (450)
T ss_pred             ee--------cCCCccHHHHHHHHHHHHhhcCCeEEEeCC---CCCHHHHHHHHHcCCCEEEECchhhcCCcCCCce---
Confidence            76        579999999999987655443   245554   799999999999     99999999999999994   


Q ss_pred             cCCcceEEEecccccccccchhhhcccccccceeecccccc
Q psy3862         553 LPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLK  593 (671)
Q Consensus       553 ~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~  593 (671)
                            |                +.+| +++|.||||+|+.
T Consensus       370 ------~----------------~~~g-~~~k~yrgm~s~~  387 (450)
T TIGR01302       370 ------E----------------IING-RRYKQYRGMGSLG  387 (450)
T ss_pred             ------E----------------EECC-EEEEEEeccchHH
Confidence                  2                2346 5789999999984

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=100.00  E-value=1.6e-41  Score=380.64  Aligned_cols=250  Identities=22%  Similarity=0.259  Sum_probs=208.1

Q ss_pred             eccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHH
Q psy3862         290 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE  369 (671)
Q Consensus       290 ~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~  369 (671)
                      ....+||||||||+|++|++.| +|||++++++    +.+.+++|||+||||||++++||++|++.||||+||+++++|+
T Consensus        17 ~~~~~ltfddv~l~p~~~~~~~-~~~~~~t~lt----~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~   91 (505)
T PLN02274         17 NQGVSYTYDDVIFHPGYIDFPA-DAVDLSTRLS----RNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNTAEE   91 (505)
T ss_pred             cCCCCCCccceEecccccCcCC-cccccccccc----cccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCCCHHH
Confidence            3457899999999999999998 8999999998    6788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcc----------------------------------------------------------------------
Q psy3862         370 WKAFAVQNPD----------------------------------------------------------------------  379 (671)
Q Consensus       370 ~~~~v~~~~~----------------------------------------------------------------------  379 (671)
                      |.++++++++                                                                      
T Consensus        92 q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~  171 (505)
T PLN02274         92 QAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTS  171 (505)
T ss_pred             HHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhcc
Confidence            9887754310                                                                      


Q ss_pred             ---c-----------------------c------------------------c-------------ceeeecccCh---h
Q psy3862         380 ---V-----------------------I------------------------K-------------HVADGGCTSP---G  393 (671)
Q Consensus       380 ---~-----------------------~------------------------~-------------~v~~~~~~~~---~  393 (671)
                         +                       +                        +             .++++.++++   +
T Consensus       172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~  251 (505)
T PLN02274        172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKE  251 (505)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHH
Confidence               0                       0                        0             0233344443   6


Q ss_pred             hHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECcccc
Q psy3862         394 DVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFA  472 (671)
Q Consensus       394 ~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~  472 (671)
                      +.++|++||+|+|+|| ++|||+.++++++++++..||.+.         ++.|||.|.+-++ ++++|||+|+||+ |+
T Consensus       252 r~~~l~~ag~d~i~iD-~~~g~~~~~~~~i~~ik~~~p~~~---------vi~g~v~t~e~a~~a~~aGaD~i~vg~-g~  320 (505)
T PLN02274        252 RLEHLVKAGVDVVVLD-SSQGDSIYQLEMIKYIKKTYPELD---------VIGGNVVTMYQAQNLIQAGVDGLRVGM-GS  320 (505)
T ss_pred             HHHHHHHcCCCEEEEe-CCCCCcHHHHHHHHHHHHhCCCCc---------EEEecCCCHHHHHHHHHcCcCEEEECC-CC
Confidence            6777899999999999 899999999999998888888663         5677889999988 6799999999996 99


Q ss_pred             CCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccc
Q psy3862         473 GHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTY  544 (671)
Q Consensus       473 G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e  544 (671)
                      | ++|+|+.+        .|.|+||.+++..++..+.++.   .++|+   |++++|++|||+     ||+|++|++++|
T Consensus       321 G-~~~~t~~~--------~~~g~~~~~~i~~~~~~~~~~~vpVIadGG---I~~~~di~kAla~GA~~V~vGs~~~~t~E  388 (505)
T PLN02274        321 G-SICTTQEV--------CAVGRGQATAVYKVASIAAQHGVPVIADGG---ISNSGHIVKALTLGASTVMMGSFLAGTTE  388 (505)
T ss_pred             C-ccccCccc--------cccCCCcccHHHHHHHHHHhcCCeEEEeCC---CCCHHHHHHHHHcCCCEEEEchhhccccc
Confidence            9 99999875        4689999999888776554431   34443   799999999999     999999999999


Q ss_pred             cCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccc
Q psy3862         545 VGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLK  593 (671)
Q Consensus       545 ~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~  593 (671)
                      +|+++         +                +.+| +++|.||||+|+.
T Consensus       389 sp~~~---------~----------------~~~g-~~~k~yrgmgs~~  411 (505)
T PLN02274        389 APGEY---------F----------------YQDG-VRVKKYRGMGSLE  411 (505)
T ss_pred             CCcce---------e----------------eeCC-eEEEEEeccchHH
Confidence            99984         1                2346 6789999999984

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=100.00  E-value=1.6e-38  Score=343.48  Aligned_cols=326  Identities=26%  Similarity=0.362  Sum_probs=250.4

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee------cC
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH------KY   88 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh------~n   88 (671)
                      ...+++||||+|+|+.++..+ ++|||++.+     .++++++||+++||+++++.+||.+++++||+|+||      ++
T Consensus        12 ~~~~~~fddV~lvp~~~~~~~-~dvdls~~~-----~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~   85 (368)
T PRK08649         12 ARRAYGLDEIAIVPSRRTRDP-EDVSTSWQI-----DAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWTRY   85 (368)
T ss_pred             ccccCCcceEEEeCCCCCCCH-HHceeeeee-----cceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccccC
Confidence            346899999999999766665 999999877     589999999999999999999999999999999999      77


Q ss_pred             CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEE-
Q psy3862          89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN-  167 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~-  167 (671)
                      .++|++..++.+...    .        +-.++++++ ...|           -.+....+.++.+++.. ...++.-+ 
T Consensus        86 ~~~e~l~~qi~~~~~----~--------~~~~~~~~~-~~~P-----------~~p~l~~~iv~~~~~~~-V~v~vr~~~  140 (368)
T PRK08649         86 EDPEPILDEIASLGK----D--------EATRLMQEL-YAEP-----------IKPELITERIAEIRDAG-VIVAVSLSP  140 (368)
T ss_pred             CCHHHHHHHHHhcCc----H--------HHHHHHHHh-hcCC-----------CCHHHHHHHHHHHHhCe-EEEEEecCC
Confidence            888888887754311    0        001122222 1111           01333455556555421 11111111 


Q ss_pred             eccHHHHHHHHHCCCcEEEECc-----CCCceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEE
Q psy3862         168 VVTGEMVEELILSGADVIKVGI-----GPGSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdg-----a~G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      ..+.+.++.|+++|+|+|++++     +|+|+..       ....++++++  .+| ++|||.|.+.+++++++|||+|+
T Consensus       141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~-------~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~  213 (368)
T PRK08649        141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG-------EPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVL  213 (368)
T ss_pred             cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC-------CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE
Confidence            2357999999999999999954     4544310       0111222332  245 67999999999999999999999


Q ss_pred             EcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCccccee
Q psy3862         240 VGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITR  319 (671)
Q Consensus       240 VG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~  319 (671)
                      ||+||||+||||.++|+|+||++||++|+++++++-                                            
T Consensus       214 VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l--------------------------------------------  249 (368)
T PRK08649        214 VGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYL--------------------------------------------  249 (368)
T ss_pred             ECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhh--------------------------------------------
Confidence            999999999999999999999999999999887520                                            


Q ss_pred             eeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHH
Q psy3862         320 TFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAM  399 (671)
Q Consensus       320 ~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~  399 (671)
                          +...  -.++|||+                                                              
T Consensus       250 ----~~~~--~~~vpVIA--------------------------------------------------------------  261 (368)
T PRK08649        250 ----DETG--GRYVHVIA--------------------------------------------------------------  261 (368)
T ss_pred             ----hhhc--CCCCeEEE--------------------------------------------------------------
Confidence                0000  02589998                                                              


Q ss_pred             HcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCC
Q psy3862         400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG  479 (671)
Q Consensus       400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt  479 (671)
                                                                   +||+...++++|+|.+|||+||+|....++.+|++
T Consensus       262 ---------------------------------------------dGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg  296 (368)
T PRK08649        262 ---------------------------------------------DGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG  296 (368)
T ss_pred             ---------------------------------------------eCCCCCHHHHHHHHHcCCCeecccchhcccccCCC
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             cEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH----------HHHhhHhHhccccCccc
Q psy3862         480 ELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ----------DILGGLRSACTYVGASK  549 (671)
Q Consensus       480 ~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia----------vMlG~~~ag~~e~~g~~  549 (671)
                      +..         ++||.+.           ++..++|..+.++|+|++.+.+.          .++|++++++.++|+..
T Consensus       297 ~~~---------~~gm~s~-----------~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~  356 (368)
T PRK08649        297 RGW---------HWGMAAP-----------HPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSD  356 (368)
T ss_pred             ccc---------ccCcccC-----------CCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCc
Confidence            863         6898884           22358899999999999999988          99999999999999999


Q ss_pred             ccccCC
Q psy3862         550 LKELPR  555 (671)
Q Consensus       550 i~e~~~  555 (671)
                      ++|++.
T Consensus       357 ~~~~~~  362 (368)
T PRK08649        357 LKEFQK  362 (368)
T ss_pred             HHHHhh
Confidence            998753

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=100.00  E-value=1.5e-39  Score=350.70  Aligned_cols=292  Identities=23%  Similarity=0.307  Sum_probs=230.2

Q ss_pred             ceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc----
Q psy3862         287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH----  362 (671)
Q Consensus       287 ~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih----  362 (671)
                      +-..-+.+|+||||+|||+|+|++| +|||++|++.     .+.+++||+.||||.||++.|+++++++|++++|.    
T Consensus         5 ~~~~~~~~~~~d~i~~vp~~~t~~~-~~v~~~~~i~-----~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl   78 (369)
T TIGR01304         5 RGRTARRTYSLDDISVVPSRRTRSS-KDVDTAWQID-----AYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGL   78 (369)
T ss_pred             CCccccccCCcceEEEcCCCCCCCh-hhccceeEEc-----ceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHH
Confidence            3345578999999999999999999 8999999985     78899999999999999999999999999999995    


Q ss_pred             --cCCCHHHHHHHHhcC----------------------ccc----ccceeeeccc-----Ch---hhH-HHHHHcCCcE
Q psy3862         363 --KYYTLEEWKAFAVQN----------------------PDV----IKHVADGGCT-----SP---GDV-AKAMGAGADF  405 (671)
Q Consensus       363 --r~~~~e~~~~~v~~~----------------------~~~----~~~v~~~~~~-----~~---~~~-~~l~~aG~d~  405 (671)
                        +|.+++++..++...                      |++    ++.++.++++     ++   .++ ..++++|+|+
T Consensus        79 ~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~  158 (369)
T TIGR01304        79 WGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADL  158 (369)
T ss_pred             HhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCE
Confidence              899999999888763                      111    1233332222     22   344 3447899999


Q ss_pred             EEEcccc--ccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEE
Q psy3862         406 VMLGGMF--AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       406 i~id~~a--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      |+|+++.  ++|.....++.+..+       ..++.--.++ +|++.+.+.++ ++++|||+|++   |.| +.|+++.+
T Consensus       159 I~ihgrt~~q~~~sg~~~p~~l~~-------~i~~~~IPVI-~G~V~t~e~A~~~~~aGaDgV~~---G~g-g~~~~~~~  226 (369)
T TIGR01304       159 LVIQGTLVSAEHVSTSGEPLNLKE-------FIGELDVPVI-AGGVNDYTTALHLMRTGAAGVIV---GPG-GANTTRLV  226 (369)
T ss_pred             EEEeccchhhhccCCCCCHHHHHH-------HHHHCCCCEE-EeCCCCHHHHHHHHHcCCCEEEE---CCC-CCcccccc
Confidence            9999764  455211122211111       0111101244 45678888887 78999999994   455 56888764


Q ss_pred             EeCCeEEEEeeCcccHHHHHhhccccccccccCC-ceEe------eecCCCHHHHHH-----HHHhhHhHhccccCcccc
Q psy3862         483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEG-KTVQ------VPYRGDVNDTVQ-----DILGGLRSACTYVGASKL  550 (671)
Q Consensus       483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G-~~v~------i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i  550 (671)
                              +|+|.|+++++.+++.++++|..+.| ++++      |.+++|++|||+     ||+|++|+.++|+||+  
T Consensus       227 --------lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~--  296 (369)
T TIGR01304       227 --------LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR--  296 (369)
T ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCC--
Confidence                    57899999999999988888877775 6676      699999999999     9999999999988777  


Q ss_pred             cccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEeccccc---CHH
Q psy3862         551 KELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRG---DVN  627 (671)
Q Consensus       551 ~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG---~v~  627 (671)
                                                  |     +||||...                |+++|+|....+...|   +|+
T Consensus       297 ----------------------------~-----~~w~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  327 (369)
T TIGR01304       297 ----------------------------G-----YFWPAAAA----------------HPRLPRGVVTESGTVGEAPTLE  327 (369)
T ss_pred             ----------------------------C-----Cccchhhc----------------CccCCccccccccccCCCCcHH
Confidence                                        4     89999885                8999999999999999   999


Q ss_pred             HHHH----------HHHHHHhhhccccCcccccccccc
Q psy3862         628 DTVQ----------DILGGLRSACTYVGASKLKELPRR  655 (671)
Q Consensus       628 ~~l~----------~l~gGLrs~m~y~Ga~~l~el~~~  655 (671)
                      ++|+          ||+|+||++|+++||++||||||.
T Consensus       328 ~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~  365 (369)
T TIGR01304       328 EILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKV  365 (369)
T ss_pred             HHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhc
Confidence            9995          999999999999999999999974

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=100.00  E-value=8.3e-39  Score=358.52  Aligned_cols=229  Identities=24%  Similarity=0.276  Sum_probs=193.8

Q ss_pred             ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHH
Q psy3862         293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA  372 (671)
Q Consensus       293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~  372 (671)
                      .+||||||||+|++|++.| ++|||+++|+    +++.+++|||+|||||||+.+||++||+.||||+||+|+++|+|.+
T Consensus        16 ~~lt~ddv~l~p~~~~~~~-~~v~~~t~l~----~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~   90 (495)
T PTZ00314         16 TGLTYDDVILLPGYIDFSR-DDVDLSTRLT----RNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVE   90 (495)
T ss_pred             cCCCccceEeccccccccc-cccccccccc----CCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHH
Confidence            5899999999999999965 9999999998    6789999999999999999999999999999999999999999999


Q ss_pred             HHhcCccc-------------------------------c---------------------------------------c
Q psy3862         373 FAVQNPDV-------------------------------I---------------------------------------K  382 (671)
Q Consensus       373 ~v~~~~~~-------------------------------~---------------------------------------~  382 (671)
                      +++++++.                               +                                       +
T Consensus        91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~  170 (495)
T PTZ00314         91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREK  170 (495)
T ss_pred             HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCC
Confidence            98775310                               0                                       0


Q ss_pred             ------------------------------------------------------------ceeeecccCh---hhHHHHH
Q psy3862         383 ------------------------------------------------------------HVADGGCTSP---GDVAKAM  399 (671)
Q Consensus       383 ------------------------------------------------------------~v~~~~~~~~---~~~~~l~  399 (671)
                                                                                  .++++.++++   ++...|+
T Consensus       171 lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~  250 (495)
T PTZ00314        171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALI  250 (495)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence                                                                        0122222334   3456668


Q ss_pred             HcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCC
Q psy3862         400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSG  478 (671)
Q Consensus       400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ct  478 (671)
                      ++|+|+|+|| ++|||+...+++++.++..||.+         .|++||+.|.+.++ +.++|||+|+||+ ||| |+|+
T Consensus       251 ~ag~d~i~id-~a~G~s~~~~~~i~~ik~~~~~~---------~v~aG~V~t~~~a~~~~~aGad~I~vg~-g~G-s~~~  318 (495)
T PTZ00314        251 EAGVDVLVVD-SSQGNSIYQIDMIKKLKSNYPHV---------DIIAGNVVTADQAKNLIDAGADGLRIGM-GSG-SICI  318 (495)
T ss_pred             HCCCCEEEEe-cCCCCchHHHHHHHHHHhhCCCc---------eEEECCcCCHHHHHHHHHcCCCEEEECC-cCC-cccc
Confidence            9999999999 89999999999988888888766         36788999998888 6799999999995 999 9999


Q ss_pred             CcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccc
Q psy3862         479 GELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASK  549 (671)
Q Consensus       479 t~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~  549 (671)
                      ||.+        +|+|+||++|+.+|+..+.++.   .++|+   |++++||+||++     ||+|++|++++|+|++.
T Consensus       319 t~~~--------~~~g~p~~~ai~~~~~~~~~~~v~vIadGG---i~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~  386 (495)
T PTZ00314        319 TQEV--------CAVGRPQASAVYHVARYARERGVPCIADGG---IKNSGDICKALALGADCVMLGSLLAGTEEAPGEY  386 (495)
T ss_pred             cchh--------ccCCCChHHHHHHHHHHHhhcCCeEEecCC---CCCHHHHHHHHHcCCCEEEECchhccccccCCce
Confidence            9875        5799999999999877665542   45554   699999999999     99999999999988883

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=100.00  E-value=4.2e-38  Score=353.33  Aligned_cols=249  Identities=24%  Similarity=0.339  Sum_probs=203.4

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      ...+||||||||+|++|++.| ++||++++|+    +.+.+++|||+|||||||+.|||++|++.||+|+||+++++|++
T Consensus         5 ~~~~~t~ddv~l~p~~~~~~~-~~~~~~t~l~----~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~   79 (486)
T PRK05567          5 AKEALTFDDVLLVPAHSEVLP-NDVDLSTQLT----KNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQ   79 (486)
T ss_pred             ccCCcCccceEecccccCcCc-ccccccchhh----hhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHH
Confidence            455899999999999999999 6999999998    57889999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccc---------------------------------------------------------------c--c---
Q psy3862         371 KAFAVQNPDV---------------------------------------------------------------I--K---  382 (671)
Q Consensus       371 ~~~v~~~~~~---------------------------------------------------------------~--~---  382 (671)
                      .+++++++..                                                               .  .   
T Consensus        80 ~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v  159 (486)
T PRK05567         80 AEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLV  159 (486)
T ss_pred             HHHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCE
Confidence            8887743110                                                               0  0   


Q ss_pred             --------------------------------------------------------c--eeeecccCh---hhHHHHHHc
Q psy3862         383 --------------------------------------------------------H--VADGGCTSP---GDVAKAMGA  401 (671)
Q Consensus       383 --------------------------------------------------------~--v~~~~~~~~---~~~~~l~~a  401 (671)
                                                                              .  +.++.++++   +....++++
T Consensus       160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~a  239 (486)
T PRK05567        160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEA  239 (486)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHh
Confidence                                                                    0  011111122   345566899


Q ss_pred             CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862         402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                      |+|+|++| ++|||+...++.++.++..+|.+.         ++.|++.|.+.++ ++++|||+|+||+ ||| |+|+||
T Consensus       240 gvdvivvD-~a~g~~~~vl~~i~~i~~~~p~~~---------vi~g~v~t~e~a~~l~~aGad~i~vg~-g~g-s~~~~r  307 (486)
T PRK05567        240 GVDVLVVD-TAHGHSEGVLDRVREIKAKYPDVQ---------IIAGNVATAEAARALIEAGADAVKVGI-GPG-SICTTR  307 (486)
T ss_pred             CCCEEEEE-CCCCcchhHHHHHHHHHhhCCCCC---------EEEeccCCHHHHHHHHHcCCCEEEECC-CCC-ccccce
Confidence            99999999 889999999998887777776552         4567789999988 6799999999996 999 999999


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKE  552 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e  552 (671)
                      .+        .|+|.||++|+.+|+..+.++   ..++|+   |++++|++|||+     ||+|++|||++|+||+.   
T Consensus       308 ~~--------~~~g~p~~~~~~~~~~~~~~~~~~viadGG---i~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~---  373 (486)
T PRK05567        308 IV--------AGVGVPQITAIADAAEAAKKYGIPVIADGG---IRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV---  373 (486)
T ss_pred             ee--------cCCCcCHHHHHHHHHHHhccCCCeEEEcCC---CCCHHHHHHHHHhCCCEEEECccccccccCCCce---
Confidence            75        579999999999987655443   246664   799999999999     99999999999999984   


Q ss_pred             cCCcceEEEecccccccccchhhhcccccccceeecccccc
Q psy3862         553 LPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLK  593 (671)
Q Consensus       553 ~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~  593 (671)
                            |                +.+| +++|.||||+|..
T Consensus       374 ------~----------------~~~g-~~~k~y~gm~s~~  391 (486)
T PRK05567        374 ------E----------------LYQG-RSYKSYRGMGSLG  391 (486)
T ss_pred             ------E----------------EECC-EEEEEEeccchHH
Confidence                  2                1235 5789999999984

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.94  E-value=1.5e-25  Score=242.31  Aligned_cols=328  Identities=24%  Similarity=0.315  Sum_probs=227.6

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee------cCC
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH------KYY   89 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh------~n~   89 (671)
                      ...|+||||.|||++.++.| ++||+++++     ..+.+++||+.+||+++++..++.++++.|++|+|+      ++.
T Consensus        10 ~~~~~~d~i~~vp~~~t~~~-~~v~~~~~i-----~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl~~~~~   83 (369)
T TIGR01304        10 RRTYSLDDISVVPSRRTRSS-KDVDTAWQI-----DAYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGLWGRHE   83 (369)
T ss_pred             cccCCcceEEEcCCCCCCCh-hhccceeEE-----cceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHHHhcCC
Confidence            46899999999999999987 799999988     589999999999999999999999999999999975      344


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-Ee
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-NV  168 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~v  168 (671)
                      .++.+..++...           ...++ ..+...++... ..+.  +     .++-..++++.+++.. ...++-- ..
T Consensus        84 ~~~~~~~QI~g~-----------~~~~~-~a~aa~~~~e~-~~~~--~-----~p~l~~~ii~~vr~a~-VtvkiRl~~~  142 (369)
T TIGR01304        84 DPDPAIAKIAEA-----------YEEGD-QAAATRLLQEL-HAAP--L-----KPELLGERIAEVRDSG-VITAVRVSPQ  142 (369)
T ss_pred             CHHHHHHHHhhc-----------CCChH-HHHHHHHHHHc-CCCc--c-----ChHHHHHHHHHHHhcc-eEEEEecCCc
Confidence            444433333210           01111 11222233321 1111  1     2344455666665531 1111111 12


Q ss_pred             ccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         169 VTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       169 ~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      ...+.++.++++|+|+|++++   ++.|.     +..-...++.++++  .+| ++|+|.|.+.++.++++|||+|.  +
T Consensus       143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~-----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~--~  215 (369)
T TIGR01304       143 NAREIAPIVVKAGADLLVIQGTLVSAEHV-----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVI--V  215 (369)
T ss_pred             CHHHHHHHHHHCCCCEEEEeccchhhhcc-----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE--E
Confidence            356899999999999999964   22220     00011234444554  356 57999999999999999999998  8


Q ss_pred             cCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeee
Q psy3862         243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFT  322 (671)
Q Consensus       243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~  322 (671)
                      |.|+.|||+.+.|+|.||++++.+|+.+++++-                                               
T Consensus       216 G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~-----------------------------------------------  248 (369)
T TIGR01304       216 GPGGANTTRLVLGIEVPMATAIADVAAARRDYL-----------------------------------------------  248 (369)
T ss_pred             CCCCCcccccccCCCCCHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence            899999999999999999999999998886420                                               


Q ss_pred             eccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcC
Q psy3862         323 FRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAG  402 (671)
Q Consensus       323 ~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG  402 (671)
                       ++++.  ..+|||+                                                                 
T Consensus       249 -~e~g~--r~vpVIA-----------------------------------------------------------------  260 (369)
T TIGR01304       249 -DETGG--RYVHVIA-----------------------------------------------------------------  260 (369)
T ss_pred             -HhcCC--CCceEEE-----------------------------------------------------------------
Confidence             00000  1389988                                                                 


Q ss_pred             CcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         403 ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       403 ~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                                                                +||+...+++++++.+|||+|++|.-...+.+|+++  
T Consensus       261 ------------------------------------------dGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~--  296 (369)
T TIGR01304       261 ------------------------------------------DGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGR--  296 (369)
T ss_pred             ------------------------------------------eCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCC--
Confidence                                                      799999999999999999999999877777778775  


Q ss_pred             EeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCC---CHHHHHH----------HHHhhHhHhccccCccc
Q psy3862         483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRG---DVNDTVQ----------DILGGLRSACTYVGASK  549 (671)
Q Consensus       483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~G---di~kAia----------vMlG~~~ag~~e~~g~~  549 (671)
                               |+-.|+.++       ..+  -+.|..+++...|   .+...|-          .++|+++..+..+|...
T Consensus       297 ---------~~~w~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~  358 (369)
T TIGR01304       297 ---------GYFWPAAAA-------HPR--LPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTD  358 (369)
T ss_pred             ---------CCccchhhc-------Ccc--CCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchh
Confidence                     344444322       111  1445444555556   6666665          68999999998888888


Q ss_pred             ccccC
Q psy3862         550 LKELP  554 (671)
Q Consensus       550 i~e~~  554 (671)
                      +||++
T Consensus       359 ~~~~~  363 (369)
T TIGR01304       359 LKEFQ  363 (369)
T ss_pred             hhhhh
Confidence            88754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.81  E-value=2.8e-21  Score=189.10  Aligned_cols=79  Identities=28%  Similarity=0.320  Sum_probs=71.8

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      ...+|+||||||+|.+|++.| ++|||+|+++    +++.+|+|++||+|||||+.+||++|++.||+||||+|+++|++
T Consensus        11 ~~~~ltfddVll~p~~s~v~p-~~~~vkt~i~----~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~~~e~   85 (170)
T COG0516          11 ARPGLTFDDVLLLPAASDVAP-AGVDVKTGLG----PGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNMLAEES   85 (170)
T ss_pred             hCCCceeccCcchhhHHhhcc-CCCeeEeccc----CCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEeccccHhhC
Confidence            345599999999999999999 5599999998    56999999999999999999999999999999999999999766


Q ss_pred             HHHH
Q psy3862         371 KAFA  374 (671)
Q Consensus       371 ~~~v  374 (671)
                      ..++
T Consensus        86 ~~~v   89 (170)
T COG0516          86 PGEY   89 (170)
T ss_pred             CCce
Confidence            6544

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.62  E-value=7.5e-15  Score=157.78  Aligned_cols=216  Identities=15%  Similarity=0.183  Sum_probs=146.5

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcC---CeEEeec
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIHK   87 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~g---glgvIh~   87 (671)
                      ....|||+.|+|+.++..+.++|||+++|     -+.++++||++++|++++      ..+||.+.++.|   ++|....
T Consensus        18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~-----~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~   92 (326)
T cd02811          18 GSTGFDDVRLVHNALPELDLDDIDLSTEF-----LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRA   92 (326)
T ss_pred             CCCChhhEEEecccCCCCCcccCCCeeEE-----CCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchh
Confidence            57889999999999998889999999998     377899999999999876      478999888888   6776643


Q ss_pred             C-CCHHHHHHhh--hc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEeeccCC------C--ChHHHH
Q psy3862          88 Y-YTLEEWKAFA--VQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLDVANG------Y--TQTFVD  149 (671)
Q Consensus        88 n-~~~Eeq~~~i--~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld~a~G------~--~~~~~~  149 (671)
                      + .++|.+..+.  ++ .|+  .|+.++.+.      +.++..+..+++++  +...+.++..++      .  ...+++
T Consensus        93 ~~~~~e~~~~~~~vr~~~~~--~p~~~Nl~~~~~~~~~~~~~~~~i~~~~a--dalel~l~~~q~~~~~~~~~df~~~~~  168 (326)
T cd02811          93 ALEDPELAESFTVVREAPPN--GPLIANLGAVQLNGYGVEEARRAVEMIEA--DALAIHLNPLQEAVQPEGDRDFRGWLE  168 (326)
T ss_pred             hccChhhhhHHHHHHHhCCC--ceEEeecCccccCCCCHHHHHHHHHhcCC--CcEEEeCcchHhhcCCCCCcCHHHHHH
Confidence            3 4455442222  21 221  344444332      33333444444443  444455544222      1  234668


Q ss_pred             HHHHHHHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce--EEEEecc--------------cCCcchhhhh
Q psy3862         150 FVRRIREM--YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV--CTTRLKN--------------KTSDFFLIQF  211 (671)
Q Consensus       150 ~ik~lr~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~--------------~~~~~~~i~~  211 (671)
                      .++.+++.  .|...+..|...+.+.++.|.++|||+|++++.+|++  .+...+.              ..+....+..
T Consensus       169 ~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~  248 (326)
T cd02811         169 RIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLE  248 (326)
T ss_pred             HHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHH
Confidence            88888764  5877788787788999999999999999998877753  1110000              0122222222


Q ss_pred             c----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         212 Y----SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       212 i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +    ..+|  +.|||-++..+..++.+|||+|.+|
T Consensus       249 ~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~  284 (326)
T cd02811         249 VRSALPDLPLIASGGIRNGLDIAKALALGADLVGMA  284 (326)
T ss_pred             HHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEc
Confidence            1    1355  7999999999999999999999777

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=99.61  E-value=8.6e-15  Score=156.06  Aligned_cols=185  Identities=16%  Similarity=0.153  Sum_probs=135.4

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCc-ccccceEEecCC-ChhhHHHHHHHHH
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNP-DVIKHVAVSSGI-SAKDLAGLKEILA  127 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p-~~~~~~~v~~G~-~~~d~~rl~~l~~  127 (671)
                      +-+.+++||+.++|.++++.+|+.|++++||||+|+. ++++|+..+.+++.. .+.+|++++.-. ++...+.++.+++
T Consensus         6 ~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~   85 (307)
T TIGR03151         6 DLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIE   85 (307)
T ss_pred             HHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHh
Confidence            5678899999999999999999999999999999995 577887766665332 234678775433 3333345566777


Q ss_pred             hCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCc
Q psy3862         128 ALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSD  205 (671)
Q Consensus       128 a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~  205 (671)
                      +  +++++.+  +.|.+..+++.+|+   .   +.++...+.+.+.++.+.++|+|.|++++  ++||.-      ..++
T Consensus        86 ~--~v~~v~~--~~g~p~~~i~~lk~---~---g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g------~~~~  149 (307)
T TIGR03151        86 E--KVPVVTT--GAGNPGKYIPRLKE---N---GVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIG------ELTT  149 (307)
T ss_pred             C--CCCEEEE--cCCCcHHHHHHHHH---c---CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCC------CCcH
Confidence            7  5566665  45666555454443   2   34555688899999999999999999988  677631      1234


Q ss_pred             chhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc
Q psy3862         206 FFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP  259 (671)
Q Consensus       206 ~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~  259 (671)
                      +.+++.+.   .+|  ++|||.|++.+++++.+|||||.+|        ||.++..-.+
T Consensus       150 ~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG--------t~f~~t~Es~  200 (307)
T TIGR03151       150 MALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG--------TRFLCAKECN  200 (307)
T ss_pred             HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc--------hHHhcccccC
Confidence            55555553   357  7999999999999999999999999        7666655443

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=99.60  E-value=7.6e-15  Score=157.98  Aligned_cols=201  Identities=19%  Similarity=0.156  Sum_probs=124.9

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCc-ccccceEEecCCChhhHHH-------
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNP-DVIKHVAVSSGISAKDLAG-------  121 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~r-------  121 (671)
                      +.+.+++||+.++|.+++..+||.|++++||||+|.. ++++|+..+.+.+.. .+.+|++++.-+...+...       
T Consensus         6 ~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~   85 (330)
T PF03060_consen    6 ELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPK   85 (330)
T ss_dssp             HHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHH
T ss_pred             HHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhh
Confidence            5677899999999999999999999999999999995 467776555554322 2345777654332111110       


Q ss_pred             -----HHH-HHHhCC------------CceEEEeeccCCCC-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCC
Q psy3862         122 -----LKE-ILAALP------------EIEYICLDVANGYT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGA  182 (671)
Q Consensus       122 -----l~~-l~~a~~------------~~d~Ivld~a~G~~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGa  182 (671)
                           +.+ .++...            ..++++  ...|.+ ..+++.+++      .+.++...+.+.+.|+.++++|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~~a~~~G~  157 (330)
T PF03060_consen   86 ELGNAVLELCIEEGVPFEEQLDVALEAKPDVVS--FGFGLPPPEVIERLHA------AGIKVIPQVTSVREARKAAKAGA  157 (330)
T ss_dssp             HTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEE--EESSSC-HHHHHHHHH------TT-EEEEEESSHHHHHHHHHTT-
T ss_pred             hhHHHHHHHHHHhCcccccccccccccceEEEE--eecccchHHHHHHHHH------cCCccccccCCHHHHHHhhhcCC
Confidence                 111 122100            122343  345666 666666664      34667778899999999999999


Q ss_pred             cEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862         183 DVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG  255 (671)
Q Consensus       183 D~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g  255 (671)
                      |+|+++|  ++||.- ..+.   +.+.+++.+.   .+|  +||||+|++++++++.+|||||++|        ||.++.
T Consensus       158 D~iv~qG~eAGGH~g-~~~~---~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~G--------TrFl~t  225 (330)
T PF03060_consen  158 DAIVAQGPEAGGHRG-FEVG---STFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG--------TRFLAT  225 (330)
T ss_dssp             SEEEEE-TTSSEE----SSG----HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEES--------HHHHTS
T ss_pred             CEEEEeccccCCCCC-cccc---ceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecC--------CeEEec
Confidence            9999999  788853 1111   2455555553   356  7999999999999999999999999        999988


Q ss_pred             cCcchhhhHHHHHHHh
Q psy3862         256 VGYPQFSAVLECADAA  271 (671)
Q Consensus       256 v~~~~~~~~~~~~~~~  271 (671)
                      .-.+--.+..+.--.+
T Consensus       226 ~Es~~~~~~K~~l~~a  241 (330)
T PF03060_consen  226 EESGASDAYKQALVDA  241 (330)
T ss_dssp             TTS-S-HHHHHHHHHG
T ss_pred             ccccChHHHHHHHHhC
Confidence            7766555555444333

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.60  E-value=1.1e-14  Score=157.90  Aligned_cols=216  Identities=17%  Similarity=0.175  Sum_probs=148.2

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcccc------HHHHHHHHHcC---CeEEeec
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHG---LFTTIHK   87 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~------~~lA~Ala~~g---glgvIh~   87 (671)
                      ...+||||.|+|+++|.++.++|||+++|-     +.++++|+++++|+++++      .+||.+.++.|   ++|.+..
T Consensus        26 ~~~~~d~v~l~~~~lp~~~~~~vd~s~~~~-----g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~  100 (352)
T PRK05437         26 KTTGFDDVRLIHNALPELDLDDIDLSTEFL-----GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRA  100 (352)
T ss_pred             CCCChheEEEecccCCCCChhhccceeeEC-----CceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHh
Confidence            468899999999999998899999999983     668999999999999865      67999888898   7787764


Q ss_pred             CC-CHHHH--HHhhhc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEeeccCC------C--ChHHHH
Q psy3862          88 YY-TLEEW--KAFAVQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLDVANG------Y--TQTFVD  149 (671)
Q Consensus        88 n~-~~Eeq--~~~i~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld~a~G------~--~~~~~~  149 (671)
                      .+ +++-.  .+.+++ .|+  .|+.++.+.      ++++..+..+++++  +...+.++..++      +  ...+.+
T Consensus       101 ~~~~~~~~~~~~~vr~~~p~--~p~~aNl~~~~~~~~~~~~~~~~~~~~~a--dal~l~l~~~qe~~~p~g~~~f~~~le  176 (352)
T PRK05437        101 ALKDPELADSFSVVRKVAPD--GLLFANLGAVQLYGYGVEEAQRAVEMIEA--DALQIHLNPLQELVQPEGDRDFRGWLD  176 (352)
T ss_pred             hccChhhHHHHHHHHHHCCC--ceEEeecCccccCCCCHHHHHHHHHhcCC--CcEEEeCccchhhcCCCCcccHHHHHH
Confidence            42 34411  122222 232  345444442      23334444444443  444455544332      1  234567


Q ss_pred             HHHHHHHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--EE--Eec--------c--cCCcchhhhhcc
Q psy3862         150 FVRRIREM--YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--TT--RLK--------N--KTSDFFLIQFYS  213 (671)
Q Consensus       150 ~ik~lr~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~t--~v~--------~--~~~~~~~i~~i~  213 (671)
                      .++.+++.  .|...|..|...+.+.++.|.++|||+|++.+.+|++-  +.  +-.        .  ..|+...+..+.
T Consensus       177 ~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~  256 (352)
T PRK05437        177 NIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEAR  256 (352)
T ss_pred             HHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHH
Confidence            88888764  58888888877889999999999999999988777541  11  100        0  113223332231


Q ss_pred             ----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 ----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 ----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                          .+|  +.|||-++..+..++.+|||+|.+|
T Consensus       257 ~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig  290 (352)
T PRK05437        257 SLLPDLPIIASGGIRNGLDIAKALALGADAVGMA  290 (352)
T ss_pred             HhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEh
Confidence                245  7999999999999999999999777

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.58  E-value=1e-14  Score=157.09  Aligned_cols=215  Identities=18%  Similarity=0.182  Sum_probs=147.0

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcC---CeEEeecC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIHKY   88 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~g---glgvIh~n   88 (671)
                      ...||||.|+|+++|..+.++|||+++|     -+.+|+.||++++|++++      ..+||.+.++.|   ++|....+
T Consensus        20 ~~~~~~~~~~~~~lp~~~~~~~d~s~~~-----~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~   94 (333)
T TIGR02151        20 STGFDDITLIHNALPEINLDDIDLTTEF-----LGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAA   94 (333)
T ss_pred             CCCcceEEEecCCCCCCCcccCCCceEE-----CCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhh
Confidence            4779999999999999999999999999     478899999999999887      567999888888   77765533


Q ss_pred             -CCHHHHHHh--hhc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEeeccCC------C--ChHHHHH
Q psy3862          89 -YTLEEWKAF--AVQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLDVANG------Y--TQTFVDF  150 (671)
Q Consensus        89 -~~~Eeq~~~--i~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld~a~G------~--~~~~~~~  150 (671)
                       .++|.+..+  +++ .|  ..|+..+.+.      ..++..++.+++++  +...+.++..+.      +  ...+++.
T Consensus        95 ~~~~~~~~~~~~vr~~~~--~~p~i~nl~~~~~~~~~~~~~~~~i~~i~a--dal~i~ln~~q~~~~p~g~~~f~~~le~  170 (333)
T TIGR02151        95 LKDPETADTFEVVREEAP--NGPLIANIGAPQLVEGGPEEAQEAIDMIEA--DALAIHLNVLQELVQPEGDRNFKGWLEK  170 (333)
T ss_pred             ccChhhHhHHHHHHHhCC--CCcEEeecCchhhccccHHHHHHHHHHhcC--CCEEEcCcccccccCCCCCcCHHHHHHH
Confidence             334433333  232 23  2344433332      12234445555554  555556554332      2  2456688


Q ss_pred             HHHHHHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--E--EEecc----------cCCcchhhhhcc-
Q psy3862         151 VRRIREM--YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--T--TRLKN----------KTSDFFLIQFYS-  213 (671)
Q Consensus       151 ik~lr~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~--t~v~~----------~~~~~~~i~~i~-  213 (671)
                      ++.+++.  .|...|..|...+.+.++.|.++|+|+|++.+++|++-  +  .+..+          ..+....+..+. 
T Consensus       171 i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~  250 (333)
T TIGR02151       171 IAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS  250 (333)
T ss_pred             HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh
Confidence            8888764  58777877877789999999999999999999888751  1  11111          001111111111 


Q ss_pred             ---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 ---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 ---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                         .+|  +.|||-|+..+..++.+|||+|-+|
T Consensus       251 ~~~~ipVIasGGI~~~~di~kaLalGAd~V~ig  283 (333)
T TIGR02151       251 DAPDAPIIASGGLRTGLDVAKAIALGADAVGMA  283 (333)
T ss_pred             cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhh
Confidence               245  7999999999999999999999555

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=99.55  E-value=8.7e-14  Score=148.06  Aligned_cols=190  Identities=17%  Similarity=0.088  Sum_probs=132.4

Q ss_pred             CceEEecCCCcccc-HHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc--cccceEEecC-CChh--hHHHHHHHHHh
Q psy3862          56 GVPIIAANMDTVGT-FEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD--VIKHVAVSSG-ISAK--DLAGLKEILAA  128 (671)
Q Consensus        56 ~~Piv~a~M~~vt~-~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~--~~~~~~v~~G-~~~~--d~~rl~~l~~a  128 (671)
                      ++||+.++|.++++ .+||.|++++||||+|.. .+++|+..+.+++...  +.+|++++.- ..+.  ..+.++-+++.
T Consensus         2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~   81 (320)
T cd04743           2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAI   81 (320)
T ss_pred             CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhc
Confidence            58999999999987 899999999999999985 4778776666654433  4678887642 1111  12455556666


Q ss_pred             CCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCce--EEEEecccCC
Q psy3862         129 LPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSV--CTTRLKNKTS  204 (671)
Q Consensus       129 ~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~--~~t~v~~~~~  204 (671)
                        .++++++  +.|.+.. .+.++   +   .+.++...+.+.+.++.++++|||+|+++|  ++||.  .++.+  ..|
T Consensus        82 --~v~~V~~--~~G~P~~-~~~lk---~---~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~--L~~  148 (320)
T cd04743          82 --KPTFALI--AGGRPDQ-ARALE---A---IGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFV--LWE  148 (320)
T ss_pred             --CCcEEEE--cCCChHH-HHHHH---H---CCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchh--hHH
Confidence              3455554  3555543 33333   3   356677788899999999999999999999  88885  11211  001


Q ss_pred             cchhhhhcc---------ccC--CccccccHHHHHHHHHcCC--------CEEEEcccCCCccccceecccCcchhhhHH
Q psy3862         205 DFFLIQFYS---------CIP--QAGNVVTGEMVEELILSGA--------DVIKVGIGPGSVCTTRLKTGVGYPQFSAVL  265 (671)
Q Consensus       205 ~~~~i~~i~---------~~p--~aGnV~t~~~a~~li~aGA--------dgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~  265 (671)
                      .  +++.+.         .+|  +||||+|++++.+++.+||        +||++|        ||.++.--.|.-.++.
T Consensus       149 ~--v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mG--------TrFl~t~Es~~~~~~~  218 (320)
T cd04743         149 S--AIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMG--------TAYLFTEEAVSAGAIL  218 (320)
T ss_pred             H--HHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEc--------cHHhcchhhcCccccc
Confidence            0  111121         366  7999999999999999998        899999        9988877666444444


Q ss_pred             HHH
Q psy3862         266 ECA  268 (671)
Q Consensus       266 ~~~  268 (671)
                      +..
T Consensus       219 ~~~  221 (320)
T cd04743         219 PTF  221 (320)
T ss_pred             HHH
Confidence            443

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=99.47  E-value=3.7e-13  Score=145.01  Aligned_cols=192  Identities=22%  Similarity=0.228  Sum_probs=131.0

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC-CCHHHHHHhhhc------CcccccceE-----EecC-CCh-
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY-YTLEEWKAFAVQ------NPDVIKHVA-----VSSG-ISA-  116 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n-~~~Eeq~~~i~~------~p~~~~~~~-----v~~G-~~~-  116 (671)
                      ..+.+.+||+.++|.+++..+||.|.+++||+|++..+ ++.|...+++++      .|.....+.     ++.- +.. 
T Consensus         9 ~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~   88 (336)
T COG2070           9 LLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVAR   88 (336)
T ss_pred             cccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheeccc
Confidence            67889999999999999999999999999999998876 343333333321      232211122     1111 111 


Q ss_pred             -hhH-HHHHHHHHhCCCceEEEeeccCC-CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CC
Q psy3862         117 -KDL-AGLKEILAALPEIEYICLDVANG-YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GP  191 (671)
Q Consensus       117 -~d~-~rl~~l~~a~~~~d~Ivld~a~G-~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~  191 (671)
                       ... +.+..+++. .+  ..++....| .+..+++.++.      .+.++...+.+.+.++.+.++|+|+|++++  ++
T Consensus        89 ~~~~~~~~~~ii~~-~~--vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAG  159 (336)
T COG2070          89 RNAAEAGVDAIIEG-AG--VPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVREALKAERAGADAVIAQGAEAG  159 (336)
T ss_pred             ccchHHhhhhHHhc-CC--CCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCC
Confidence             222 233334442 12  223333455 47777887775      355777788999999999999999999999  78


Q ss_pred             CceEEEEecccCCcchhhhhcc---c-cC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchh
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS---C-IP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQF  261 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~---~-~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~  261 (671)
                      ||...  ....+..+.|++.+.   . +|  +||||+|++++++++.+|||||++|        ||.++..-.+--
T Consensus       160 GH~g~--~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~G--------T~Fl~t~Ea~a~  225 (336)
T COG2070         160 GHRGG--VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMG--------TRFLATKEADAS  225 (336)
T ss_pred             CcCCC--CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhh--------hhhhcccccCCC
Confidence            88422  111223455666663   3 67  7999999999999999999999999        999887765543

>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.43  E-value=2.3e-14  Score=140.33  Aligned_cols=78  Identities=28%  Similarity=0.318  Sum_probs=71.5

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+||||||+++|+++++.|. ++|++|.|+    ++..+++|+++++||++++.+||++|++.||+||||+||++|||.
T Consensus        12 ~~~ltfddVll~p~~s~v~p~-~~~vkt~i~----~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~~~e~~   86 (170)
T COG0516          12 RPGLTFDDVLLLPAASDVAPA-GVDVKTGLG----PGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNMLAEESP   86 (170)
T ss_pred             CCCceeccCcchhhHHhhccC-CCeeEeccc----CCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEeccccHhhCC
Confidence            356999999999999999985 599999998    679999999999999999999999999999999999999998765


Q ss_pred             Hhh
Q psy3862          96 AFA   98 (671)
Q Consensus        96 ~~i   98 (671)
                      ..+
T Consensus        87 ~~v   89 (170)
T COG0516          87 GEY   89 (170)
T ss_pred             Cce
Confidence            444

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.37  E-value=8.9e-12  Score=132.53  Aligned_cols=204  Identities=21%  Similarity=0.159  Sum_probs=135.4

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEee--cCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh--~n~   89 (671)
                      ...||++.|+|+.++.  .+++|++++|     -+.+++.|+++++|++.+      +..+|.+.++.|..+.+.  .+.
T Consensus        33 ~~~~~~i~~~~~~l~~--~~~id~~~~~-----lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~  105 (299)
T cd02809          33 RAAFDRIRLRPRVLRD--VSKRDTSTTL-----LGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT  105 (299)
T ss_pred             HHHHHhceeecccCCC--CCCCCCceEE-----CCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC
Confidence            4679999999999987  4799999999     477889999999997654      468999999998887766  346


Q ss_pred             CHHHHHHhhhcCcccccceEEec--CCChhhHHHHHH-HHHhCCCceEEEe--eccCCCChHHHHHHHHHHHhCCCceEE
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSS--GISAKDLAGLKE-ILAALPEIEYICL--DVANGYTQTFVDFVRRIREMYPKHVII  164 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~--G~~~~d~~rl~~-l~~a~~~~d~Ivl--d~a~G~~~~~~~~ik~lr~~~P~~~li  164 (671)
                      ++|+..+.   .|   +++.+..  ...+++..++.+ +.+.  +.+++.+  +..+.-.....+.++++++..+ ..++
T Consensus       106 ~~~~i~~~---~~---~~~~~ql~~~~~~~~~~~~i~~~~~~--g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvi  176 (299)
T cd02809         106 SLEEVAAA---AP---GPRWFQLYVPRDREITEDLLRRAEAA--GYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLI  176 (299)
T ss_pred             CHHHHHHh---cC---CCeEEEEeecCCHHHHHHHHHHHHHc--CCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEE
Confidence            66654322   22   3443321  123333333322 3333  5566555  3332111123466777776543 2344


Q ss_pred             EEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc----c-ccC--CccccccHHHHHHHHHcCCCE
Q psy3862         165 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY----S-CIP--QAGNVVTGEMVEELILSGADV  237 (671)
Q Consensus       165 ~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i----~-~~p--~aGnV~t~~~a~~li~aGAdg  237 (671)
                      +..+.+.+.++.++++|||+|++.+.+|+....    ..+++..+..+    . .+|  +.|||-|++.+..++++|||+
T Consensus       177 vK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~----g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~  252 (299)
T cd02809         177 LKGILTPEDALRAVDAGADGIVVSNHGGRQLDG----APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADA  252 (299)
T ss_pred             EeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCC----CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence            445688999999999999999998866653110    11223233222    1 255  799999999999999999999


Q ss_pred             EEEc
Q psy3862         238 IKVG  241 (671)
Q Consensus       238 vkVG  241 (671)
                      |.||
T Consensus       253 V~ig  256 (299)
T cd02809         253 VLIG  256 (299)
T ss_pred             EEEc
Confidence            9998

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=99.36  E-value=8.3e-12  Score=137.23  Aligned_cols=201  Identities=18%  Similarity=0.070  Sum_probs=124.2

Q ss_pred             CCcccCceEEecCCC-ccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc--c-ccceEEecCCChhh----HHH
Q psy3862          51 GKTYQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD--V-IKHVAVSSGISAKD----LAG  121 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~-~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~--~-~~~~~v~~G~~~~d----~~r  121 (671)
                      +.+.+++||+.++|. ++++.+|+.|++++||||++.. ++++|+..+.+.+...  + .+|++++.-..+.+    .+.
T Consensus         8 ~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~   87 (418)
T cd04742           8 EDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGL   87 (418)
T ss_pred             HHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHH
Confidence            567789999999999 6899999999999999999995 5888876666643322  2 46888764333221    122


Q ss_pred             HHHHHHhCCCceEEEeeccCCCChHHHHHHHH--HHHhCCCc-----eEEEEEe--------------------------
Q psy3862         122 LKEILAALPEIEYICLDVANGYTQTFVDFVRR--IREMYPKH-----VIIAGNV--------------------------  168 (671)
Q Consensus       122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~--lr~~~P~~-----~li~g~v--------------------------  168 (671)
                      ++..++.  ++..+... ++..+.+.+...+.  ++. -+.+     ..+...+                          
T Consensus        88 v~l~le~--gV~~ve~s-a~~~~~p~~~~~r~~G~~~-~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~  163 (418)
T cd04742          88 VDLFLRH--GVRVVEAS-AFMQLTPALVRYRAKGLRR-DADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK  163 (418)
T ss_pred             HHHHHHc--CCCEEEec-cccCCCcchhhHHhcCCcc-cccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence            3334444  44443321 11111111111111  000 0010     1111111                          


Q ss_pred             ccHHHHHHHHHCC-CcEEEECc-CCCceEEEEecccCCcchhhhhcc--------------ccC--CccccccHHHHHHH
Q psy3862         169 VTGEMVEELILSG-ADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFYS--------------CIP--QAGNVVTGEMVEEL  230 (671)
Q Consensus       169 ~t~e~a~~Li~AG-aD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i~--------------~~p--~aGnV~t~~~a~~l  230 (671)
                      .|.+.|+.+.+.| +|.|+++. ++||.-      ..+.+.+++.+.              .+|  +||||+|++++.++
T Consensus       164 it~~eA~~A~~~g~aD~Ivvq~EAGGH~g------~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA  237 (418)
T cd04742         164 ITEEQAELARRVPVADDITVEADSGGHTD------NRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAA  237 (418)
T ss_pred             CCHHHHHHHHhCCCCCEEEEcccCCCCCC------CccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHH
Confidence            2556666666666 69999998 788841      112222222221              256  79999999999999


Q ss_pred             HHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHH
Q psy3862         231 ILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECAD  269 (671)
Q Consensus       231 i~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~  269 (671)
                      +.+|||+|++|        |+.++..-.+.-.++-+.-.
T Consensus       238 ~alGAd~V~~G--------T~flat~Ea~~s~~~K~~L~  268 (418)
T cd04742         238 FALGADFIVTG--------SINQCTVEAGTSDAVKDLLQ  268 (418)
T ss_pred             HHcCCcEEeec--------cHHHhCccccCCHHHHHHHH
Confidence            99999999999        99999888776666655543

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR02814 pfaD_fam PfaD family protein

Probab=99.29  E-value=5.6e-11  Score=131.50  Aligned_cols=201  Identities=18%  Similarity=0.132  Sum_probs=123.7

Q ss_pred             CCcccCceEEecCCC-ccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc-cc-cc-eEEecCCChhh----HHH
Q psy3862          51 GKTYQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD-VI-KH-VAVSSGISAKD----LAG  121 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~-~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~-~~-~~-~~v~~G~~~~d----~~r  121 (671)
                      +-+.+++||+.++|. ++++.+|+.|++++||||++.. ++++|+..+.+.+... +. +| ++++.=.++.+    .+.
T Consensus        13 ~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~   92 (444)
T TIGR02814        13 EDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGL   92 (444)
T ss_pred             HHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHH
Confidence            567889999999998 6899999999999999999995 5788876666643221 22 25 77754332222    223


Q ss_pred             HHHHHHhCCCceEEEeeccCCCChHHHHHHHH--H------------------------HHhC-CCce-----EEEEEec
Q psy3862         122 LKEILAALPEIEYICLDVANGYTQTFVDFVRR--I------------------------REMY-PKHV-----IIAGNVV  169 (671)
Q Consensus       122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~--l------------------------r~~~-P~~~-----li~g~v~  169 (671)
                      ++.+++.  ++..+......+....+. ..+.  +                        ...+ |...     ++...+.
T Consensus        93 v~l~l~~--~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~i  169 (444)
T TIGR02814        93 VDLLLRH--GVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRI  169 (444)
T ss_pred             HHHHHHc--CCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCC
Confidence            3444444  444332211101111111 1000  0                        0000 1000     1111223


Q ss_pred             cHHHHHHHHHCC-CcEEEECc-CCCceEEEEecccCCcchhhhhcc--------------ccC--CccccccHHHHHHHH
Q psy3862         170 TGEMVEELILSG-ADVIKVGI-GPGSVCTTRLKNKTSDFFLIQFYS--------------CIP--QAGNVVTGEMVEELI  231 (671)
Q Consensus       170 t~e~a~~Li~AG-aD~IvVdg-a~G~~~~t~v~~~~~~~~~i~~i~--------------~~p--~aGnV~t~~~a~~li  231 (671)
                      |.+.|+.+.+.| +|.|+++. ++||.      ..++.+.+++.+.              .+|  +||||+|++++.+++
T Consensus       170 t~eEA~~a~~~g~aD~Ivve~EAGGHt------g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAl  243 (444)
T TIGR02814       170 TREEAELARRVPVADDICVEADSGGHT------DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAF  243 (444)
T ss_pred             CHHHHHHHHhCCCCcEEEEeccCCCCC------CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHH
Confidence            666677777777 59999987 88884      1223334444441              245  799999999999999


Q ss_pred             HcCCCEEEEcccCCCccccceecccCcchhhhHHHHH
Q psy3862         232 LSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECA  268 (671)
Q Consensus       232 ~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~  268 (671)
                      .+|||+|++|        |+.++..-.+.-.++-+.-
T Consensus       244 aLGAdgV~~G--------T~flat~Esgas~~~K~~L  272 (444)
T TIGR02814       244 MLGADFIVTG--------SVNQCTVEAGTSDNVKKLL  272 (444)
T ss_pred             HcCCcEEEec--------cHHHhCccccCCHHHHHHH
Confidence            9999999999        9999988877666665554

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=99.12  E-value=5.4e-10  Score=123.19  Aligned_cols=235  Identities=16%  Similarity=0.117  Sum_probs=143.9

Q ss_pred             CCCCCceEEecCCcCCCC---CCcceeeeeeecccCCCcccCceEEecCCCcccc-----HHHHHHHHHcCCeEEeec-C
Q psy3862          18 KLDFKDVMLRPKRSTLKS---RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT-----FEMAKHLAKHGLFTTIHK-Y   88 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~---~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~-----~~lA~Ala~~gglgvIh~-n   88 (671)
                      ..+++|+.+.|.+....|   ...++.++.++++.++++.++.||+.++|.+++.     ..||.++++.|+++.++- +
T Consensus        36 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg  115 (392)
T cd02808          36 FGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGG  115 (392)
T ss_pred             CCChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCCC
Confidence            468899999886544332   2345558888888889999999999999998753     679999999999999995 4


Q ss_pred             CCHHHHHHhhhcCc-ccccceEEe-------------------cCCC---hh-h-HHHHHHHHHhCCCceEEEeeccCC-
Q psy3862          89 YTLEEWKAFAVQNP-DVIKHVAVS-------------------SGIS---AK-D-LAGLKEILAALPEIEYICLDVANG-  142 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p-~~~~~~~v~-------------------~G~~---~~-d-~~rl~~l~~a~~~~d~Ivld~a~G-  142 (671)
                      +++|+......... ...++|++.                   +|..   +. . ..++..+....++.+++.....+. 
T Consensus       116 ~~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~  195 (392)
T cd02808         116 ELPEEREGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDI  195 (392)
T ss_pred             CCHHHHhhhhheEEEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCC
Confidence            77776543332110 111222211                   0100   00 0 012222222234444444322221 


Q ss_pred             -CChHHHHHHHHHHHhC---CCceEEEEEeccHHHHHHHHHC-CCcEEEECcCCCce-EEEE-eccc--CCcchhhhhcc
Q psy3862         143 -YTQTFVDFVRRIREMY---PKHVIIAGNVVTGEMVEELILS-GADVIKVGIGPGSV-CTTR-LKNK--TSDFFLIQFYS  213 (671)
Q Consensus       143 -~~~~~~~~ik~lr~~~---P~~~li~g~v~t~e~a~~Li~A-GaD~IvVdga~G~~-~~t~-v~~~--~~~~~~i~~i~  213 (671)
                       .++.+.+.++++|+..   |...++++.. +.+.+..++++ |+|+|+|++.+|.. .... ....  .|.+..+..+.
T Consensus       196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~  274 (392)
T cd02808         196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAH  274 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEEEECCCC-CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHH
Confidence             2356788899988764   5555666554 44555555555 59999999975532 1111 1111  24433333331


Q ss_pred             ----------ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchh
Q psy3862         214 ----------CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQF  261 (671)
Q Consensus       214 ----------~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~  261 (671)
                                .+|  ++|||.|+..+..++++|||+|.+|        |....+.|.-|.
T Consensus       275 ~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig--------~~~l~al~c~~~  326 (392)
T cd02808         275 QALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIG--------TAALIALGCIQA  326 (392)
T ss_pred             HHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeec--------hHHHHhcchHHH
Confidence                      245  7999999999999999999999999        666666665443

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=98.92  E-value=3.1e-08  Score=107.45  Aligned_cols=207  Identities=21%  Similarity=0.210  Sum_probs=127.3

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n~   89 (671)
                      ..-||++.|+|..++..  +++||+++|     -+.++..||+++||+..      ++..+|.|.++.|-..++.  ..+
T Consensus        33 ~~af~~~~l~pr~L~dv--~~~d~~~~~-----lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~  105 (344)
T cd02922          33 LEAFQRIRFRPRVLRDV--EKVDTSTTI-----LGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC  105 (344)
T ss_pred             HHHHHhCceeccccCCC--CCCCCceEE-----CCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC
Confidence            45699999999999876  699999999     47889999999999942      2457888888887665543  457


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHH----HhCCCceEEEeeccC-CC---------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEIL----AALPEIEYICLDVAN-GY---------------------  143 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~----~a~~~~d~Ivld~a~-G~---------------------  143 (671)
                      ++|+..+..  .|+...=+++...   .|.+...+++    .+.-..-++++|... |.                     
T Consensus       106 s~e~v~~~~--~~~~~~w~Qly~~---~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~  180 (344)
T cd02922         106 SLEEIVDAR--PPDQPLFFQLYVN---KDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKK  180 (344)
T ss_pred             CHHHHHHhc--CCCCcEEEEEeec---CCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccc
Confidence            888744321  1221111222111   1222222222    221122234444330 00                     


Q ss_pred             -----------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc
Q psy3862         144 -----------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF  206 (671)
Q Consensus       144 -----------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~  206 (671)
                                       +....+.++++++..+ .++++-.+.+.+.++.+.++|||.|++.+.+|...-..    .+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~----~~~~  255 (344)
T cd02922         181 TKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK-LPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTA----PAPI  255 (344)
T ss_pred             cccccchHHHHHhhccCCCCCHHHHHHHHHhcC-CcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCC----CCHH
Confidence                             0011244666665442 23455566789999999999999999987666531110    1222


Q ss_pred             hhhhhcc--------ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         207 FLIQFYS--------CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       207 ~~i~~i~--------~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+..+.        .+|  ..|||-++..+..++.+|||+|.||
T Consensus       256 ~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG  300 (344)
T cd02922         256 EVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLG  300 (344)
T ss_pred             HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            2222221        245  7999999999999999999999887

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=98.84  E-value=2.1e-08  Score=108.15  Aligned_cols=221  Identities=15%  Similarity=0.150  Sum_probs=127.1

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcC---CeEEEc
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIH  362 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~G---glgvih  362 (671)
                      .....||||.|+|.--...+.++|||+++|-     ...+..||+-++|=-.+      +.++|++-.++|   ++|-.-
T Consensus        17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~-----G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~   91 (326)
T cd02811          17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFL-----GKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQR   91 (326)
T ss_pred             cCCCChhhEEEecccCCCCCcccCCCeeEEC-----CceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCch
Confidence            3577899999999887666789999999974     45789999999995444      589999999999   888774


Q ss_pred             -cCCCHHHHHH--HHhcCcccccceeeecc-----cChhhHHHHHH-cCCcEEEEccccc--------ccccc--ccccc
Q psy3862         363 -KYYTLEEWKA--FAVQNPDVIKHVADGGC-----TSPGDVAKAMG-AGADFVMLGGMFA--------GHDQS--GGELT  423 (671)
Q Consensus       363 -r~~~~e~~~~--~v~~~~~~~~~v~~~~~-----~~~~~~~~l~~-aG~d~i~id~~a~--------gh~~~--~~~~~  423 (671)
                       -..++|.|.+  .+++...-.+.++-.++     .+++++.+.++ +++|.+-|. ...        ++...  .++. 
T Consensus        92 ~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~-l~~~q~~~~~~~~~df~~~~~~-  169 (326)
T cd02811          92 AALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIH-LNPLQEAVQPEGDRDFRGWLER-  169 (326)
T ss_pred             hhccChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe-CcchHhhcCCCCCcCHHHHHHH-
Confidence             4556775522  23332211122221222     24566666643 578888775 211        11100  0111 


Q ss_pred             cccccccccccccccccC-ceee--ccccCchhHHH-HHHcCCcEEEECccccCCccCCC---cEEEeC---CeEEEEee
Q psy3862         424 NIEYMFFPLVGDMNSYLG-GVVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG---ELIEKD---GKKVKLFY  493 (671)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~-~~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt---~~v~~~---g~~~k~g~  493 (671)
                               ++.+++.+. .++.  -|+..+.+.++ +.++|+|+|-|+. ..|++...-   |....+   + ..-..+
T Consensus       170 ---------i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG-~GGt~~~~ie~~r~~~~~~~~~-~~~~~~  238 (326)
T cd02811         170 ---------IEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAG-AGGTSWARVENYRAKDSDQRLA-EYFADW  238 (326)
T ss_pred             ---------HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC-CCCCcccccccccccccccccc-cccccc
Confidence                     222222221 1222  23345677777 5699999999974 223121110   100000   0 112346


Q ss_pred             CcccHHHHHhhccccccc-cccCCceEeeecCCCHHHHHHH
Q psy3862         494 GMSSTTAMDKHAGGVAEY-RAAEGKTVQVPYRGDVNDTVQD  533 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y-~~~~G~~v~i~~~Gdi~kAiav  533 (671)
                      |.|...++.++.....+. ..++|+   |+++.|+.|||+-
T Consensus       239 g~~t~~~l~~~~~~~~~ipIiasGG---Ir~~~dv~kal~l  276 (326)
T cd02811         239 GIPTAASLLEVRSALPDLPLIASGG---IRNGLDIAKALAL  276 (326)
T ss_pred             cccHHHHHHHHHHHcCCCcEEEECC---CCCHHHHHHHHHh
Confidence            778777777654433111 134443   7899999999983

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=98.79  E-value=2e-08  Score=107.01  Aligned_cols=197  Identities=20%  Similarity=0.156  Sum_probs=120.6

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      ..|||+.|+|..  +..-+++|++++|-     ...+..||+-++|...+      +.++|.+-+++|...++.  ...+
T Consensus        34 ~~~~~i~~~~~~--l~~~~~id~~~~~l-----g~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~  106 (299)
T cd02809          34 AAFDRIRLRPRV--LRDVSKRDTSTTLL-----GQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS  106 (299)
T ss_pred             HHHHhceeeccc--CCCCCCCCCceEEC-----CeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC
Confidence            359999999943  33358999999984     45678999999996554      568899999999999887  5668


Q ss_pred             HHHHHHHHhcCcccccceeeecccChhhH----HHHHHcCCcEEEEcc-ccccccccccccccccccccccccccccccC
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSPGDV----AKAMGAGADFVMLGG-MFAGHDQSGGELTNIEYMFFPLVGDMNSYLG  441 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~~~~----~~l~~aG~d~i~id~-~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (671)
                      +|+..+... .|- .-++.  +...++..    +.+.+.|+|.|.+.- ..+.-...          ....+.++++.++
T Consensus       107 ~~~i~~~~~-~~~-~~ql~--~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~----------~~~~i~~l~~~~~  172 (299)
T cd02809         107 LEEVAAAAP-GPR-WFQLY--VPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRL----------TWDDLAWLRSQWK  172 (299)
T ss_pred             HHHHHHhcC-CCe-EEEEe--ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC----------CHHHHHHHHHhcC
Confidence            777664421 111 11111  11123333    333567999999851 11110000          1123444555443


Q ss_pred             -ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccc-c-ccccCCc
Q psy3862         442 -GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-E-YRAAEGK  517 (671)
Q Consensus       442 -~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~-y~~~~G~  517 (671)
                       .+++-+ +.+.+.++ +.++|||+|.|..  .|.     +.         ...|.+...++.++..... + -...+|.
T Consensus       173 ~pvivK~-v~s~~~a~~a~~~G~d~I~v~~--~gG-----~~---------~~~g~~~~~~l~~i~~~~~~~ipvia~GG  235 (299)
T cd02809         173 GPLILKG-ILTPEDALRAVDAGADGIVVSN--HGG-----RQ---------LDGAPATIDALPEIVAAVGGRIEVLLDGG  235 (299)
T ss_pred             CCEEEee-cCCHHHHHHHHHCCCCEEEEcC--CCC-----CC---------CCCCcCHHHHHHHHHHHhcCCCeEEEeCC
Confidence             355555 46666666 6799999999973  331     11         2356777888877544331 1 1134443


Q ss_pred             eEeeecCCCHHHHHH
Q psy3862         518 TVQVPYRGDVNDTVQ  532 (671)
Q Consensus       518 ~v~i~~~Gdi~kAia  532 (671)
                         |++..|+.|+|+
T Consensus       236 ---I~~~~d~~kal~  247 (299)
T cd02809         236 ---IRRGTDVLKALA  247 (299)
T ss_pred             ---CCCHHHHHHHHH
Confidence               688899999987

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=98.74  E-value=2.8e-07  Score=94.19  Aligned_cols=172  Identities=23%  Similarity=0.247  Sum_probs=108.8

Q ss_pred             CceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCccc-ccceEEecCCCh---hhHHHHHHHHHhCC
Q psy3862          56 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPDV-IKHVAVSSGISA---KDLAGLKEILAALP  130 (671)
Q Consensus        56 ~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~~-~~~~~v~~G~~~---~d~~rl~~l~~a~~  130 (671)
                      +.||+.++|.++++.+++.++++.|++|+++. +.+.++..+.+++.... ..++.++.-...   ...++++.+.++  
T Consensus         2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~--   79 (236)
T cd04730           2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE--   79 (236)
T ss_pred             CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhC--
Confidence            47999999999999999999999999999984 56676654444322111 123333222221   223456666666  


Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcC--CCceEEEEecccCCcchh
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG--PGSVCTTRLKNKTSDFFL  208 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga--~G~~~~t~v~~~~~~~~~  208 (671)
                      +.+.+++...  .+..+.   +.+++.  . ..+...+.+.++++.+.++|+|+|.+++.  +|+.-...    .+.+..
T Consensus        80 g~d~v~l~~~--~~~~~~---~~~~~~--~-i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~----~~~~~~  147 (236)
T cd04730          80 GVPVVSFSFG--PPAEVV---ERLKAA--G-IKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFAL  147 (236)
T ss_pred             CCCEEEEcCC--CCHHHH---HHHHHc--C-CEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccc----cCHHHH
Confidence            7788877532  333333   333332  1 22334566778899999999999998763  23321100    011222


Q ss_pred             hhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         209 IQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       209 i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +..+.   .+|  ++|||.+.+.+..++++|||||-||
T Consensus       148 i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg  185 (236)
T cd04730         148 VPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG  185 (236)
T ss_pred             HHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence            22221   356  7999999999999999999999998

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=98.72  E-value=1.1e-07  Score=103.65  Aligned_cols=274  Identities=15%  Similarity=0.151  Sum_probs=161.1

Q ss_pred             ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCC------HHHHHHHHHcC---CeEEEcc
Q psy3862         293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHG---LFTTIHK  363 (671)
Q Consensus       293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~------~~mA~~la~~G---glgvihr  363 (671)
                      ...+||||.|+|.--.....+||||+++|-     ...++.||+-++|=-.++      .++|++-.+.|   ++|-+.-
T Consensus        26 ~~~~~d~v~l~~~~lp~~~~~~vd~s~~~~-----g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~  100 (352)
T PRK05437         26 KTTGFDDVRLIHNALPELDLDDIDLSTEFL-----GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRA  100 (352)
T ss_pred             CCCChheEEEecccCCCCChhhccceeeEC-----CceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHh
Confidence            567899999999996655679999999984     346899999999998877      88999999999   9998863


Q ss_pred             -CCCHH--HHHHHHhc-Ccccccceeeec-----ccChhhHHHHHH-cCCcEEEEccccc--------ccccc--ccccc
Q psy3862         364 -YYTLE--EWKAFAVQ-NPDVIKHVADGG-----CTSPGDVAKAMG-AGADFVMLGGMFA--------GHDQS--GGELT  423 (671)
Q Consensus       364 -~~~~e--~~~~~v~~-~~~~~~~v~~~~-----~~~~~~~~~l~~-aG~d~i~id~~a~--------gh~~~--~~~~~  423 (671)
                       ..+++  +....+++ .|+. +.++-.+     +.+++++.+.++ .++|.+-|. .-.        ||...  .++. 
T Consensus       101 ~~~~~~~~~~~~~vr~~~p~~-p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~-l~~~qe~~~p~g~~~f~~~le~-  177 (352)
T PRK05437        101 ALKDPELADSFSVVRKVAPDG-LLFANLGAVQLYGYGVEEAQRAVEMIEADALQIH-LNPLQELVQPEGDRDFRGWLDN-  177 (352)
T ss_pred             hccChhhHHHHHHHHHHCCCc-eEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe-CccchhhcCCCCcccHHHHHHH-
Confidence             23444  44444444 2342 1111111     223466666543 578888876 211        22110  1122 


Q ss_pred             cccccccccccccccccC-ceee--ccccCchhHHH-HHHcCCcEEEECccccCCcc---CCCcEEEeCCeEEEEeeCcc
Q psy3862         424 NIEYMFFPLVGDMNSYLG-GVVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQ---SGGELIEKDGKKVKLFYGMS  496 (671)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~-~~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~---ctt~~v~~~g~~~k~g~G~~  496 (671)
                               ++.+++.++ ++++  -|+..+.+.++ +.++|+|+|-|+. ..|++.   +..|.....-......+|.|
T Consensus       178 ---------i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~p  247 (352)
T PRK05437        178 ---------IAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIP  247 (352)
T ss_pred             ---------HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC-CCCCCccchhhhhhhccccccccccccCC
Confidence                     222233221 1222  23345677777 5699999999985 334221   11121000000112357889


Q ss_pred             cHHHHHhhccccccc-cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhh
Q psy3862         497 STTAMDKHAGGVAEY-RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQD  575 (671)
Q Consensus       497 q~tAi~~~a~~~~~y-~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~  575 (671)
                      .+.++.++.....+. ..++|+   |++..|+.|+|+.       |++               ++.++..          
T Consensus       248 t~~~l~~i~~~~~~ipvia~GG---I~~~~dv~k~l~~-------GAd---------------~v~ig~~----------  292 (352)
T PRK05437        248 TAQSLLEARSLLPDLPIIASGG---IRNGLDIAKALAL-------GAD---------------AVGMAGP----------  292 (352)
T ss_pred             HHHHHHHHHHhcCCCeEEEECC---CCCHHHHHHHHHc-------CCC---------------EEEEhHH----------
Confidence            888887764432111 123342   7889999998884       332               2211000          


Q ss_pred             hcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccc
Q psy3862         576 ILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR  655 (671)
Q Consensus       576 ~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~  655 (671)
                      ++.+                               ....|       .-.+.+++..+...||..|..+|+++++||+..
T Consensus       293 ~l~~-------------------------------~~~~g-------~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~  334 (352)
T PRK05437        293 FLKA-------------------------------ALEGG-------EEAVIELIEQWIEELKIAMFLTGAKNIAELRKV  334 (352)
T ss_pred             HHHH-------------------------------HHhcc-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC
Confidence            0000                               00111       113678889999999999999999999999865


Q ss_pred             cE
Q psy3862         656 AT  657 (671)
Q Consensus       656 a~  657 (671)
                      -.
T Consensus       335 ~~  336 (352)
T PRK05437        335 PL  336 (352)
T ss_pred             CE
Confidence            43

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=98.67  E-value=3.2e-08  Score=105.93  Aligned_cols=140  Identities=22%  Similarity=0.214  Sum_probs=90.5

Q ss_pred             eeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCccc-------------------c-------
Q psy3862         329 TYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDV-------------------I-------  381 (671)
Q Consensus       329 ~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~-------------------~-------  381 (671)
                      +.+..|||.++|..+++++||.+.++.||||+|+ .+.++|++.+++++.++.                   +       
T Consensus         8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~   87 (307)
T TIGR03151         8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEK   87 (307)
T ss_pred             hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCC
Confidence            3467899999999999999999999999999999 677888876666543221                   0       


Q ss_pred             -cce--------------eeecc------cChhhHHHHHHcCCcEEEEcccc-ccccc--cccccccccccccccccccc
Q psy3862         382 -KHV--------------ADGGC------TSPGDVAKAMGAGADFVMLGGMF-AGHDQ--SGGELTNIEYMFFPLVGDMN  437 (671)
Q Consensus       382 -~~v--------------~~~~~------~~~~~~~~l~~aG~d~i~id~~a-~gh~~--~~~~~~~~~~~~~~~~~~~~  437 (671)
                       +.+              ...+.      .+.++..++.++|+|.|+++|.- .||..  ...++++.+...+       
T Consensus        88 v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-------  160 (307)
T TIGR03151        88 VPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-------  160 (307)
T ss_pred             CCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-------
Confidence             001              11111      12344556678999999998754 47743  2233333333211       


Q ss_pred             cccCceeeccccCchh-HHHHHHcCCcEEEECccccCCccC
Q psy3862         438 SYLGGVVDGGCTSPGD-VAKAMGAGADFVMLGGMFAGHDQS  477 (671)
Q Consensus       438 ~~~~~~i~gG~v~t~~-~a~~l~aGAd~V~vG~~g~G~s~c  477 (671)
                       .++=+..|| +.+++ +++++..|||+|++|...-.+.+|
T Consensus       161 -~iPviaaGG-I~~~~~~~~al~~GA~gV~iGt~f~~t~Es  199 (307)
T TIGR03151       161 -SIPVIAAGG-IADGRGMAAAFALGAEAVQMGTRFLCAKEC  199 (307)
T ss_pred             -CCCEEEECC-CCCHHHHHHHHHcCCCEeecchHHhccccc
Confidence             012134556 55555 677889999999999744443444

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=98.61  E-value=6.9e-07  Score=98.06  Aligned_cols=209  Identities=15%  Similarity=0.164  Sum_probs=126.3

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n~   89 (671)
                      -..|+++.|.|..+.-.  +++|++++|     -+.++..||+++|+...      ++..+|.|.++.|-.-++-  .++
T Consensus        54 ~~af~~~~l~PRvL~dv--~~~dt~t~l-----lG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~  126 (383)
T cd03332          54 RDAFSRWRIVPRMLRGV--TERDLSVEL-----FGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS  126 (383)
T ss_pred             HHHHHhcCccccccccC--CCCCCceee-----CCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCC
Confidence            35699999999998764  699999999     48889999999999863      2467888878887666654  458


Q ss_pred             CHHHHHHhhh-----------cCccc----ccc--------eEEecC-----CChhhHHH-H---------HHHHHhCCC
Q psy3862          90 TLEEWKAFAV-----------QNPDV----IKH--------VAVSSG-----ISAKDLAG-L---------KEILAALPE  131 (671)
Q Consensus        90 ~~Eeq~~~i~-----------~~p~~----~~~--------~~v~~G-----~~~~d~~r-l---------~~l~~a~~~  131 (671)
                      ++||..+...           ++.+.    ++.        +.+.+.     ...+|.+. .         ...+. .|.
T Consensus       127 slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~-~~~  205 (383)
T cd03332         127 SIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFS-DPV  205 (383)
T ss_pred             CHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhc-cch
Confidence            8988654310           01100    000        001100     01111100 0         00000 000


Q ss_pred             ceEEEeecc---C-C------------------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         132 IEYICLDVA---N-G------------------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       132 ~d~Ivld~a---~-G------------------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                       ....+...   + .                  ...+| +.++++++..+ ..++...+.+.+.++.++++|||.|+|.+
T Consensus       206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW-~~i~~lr~~~~-~pvivKgV~~~~dA~~a~~~G~d~I~vsn  282 (383)
T cd03332         206 -FRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTW-EDLAFLREWTD-LPIVLKGILHPDDARRAVEAGVDGVVVSN  282 (383)
T ss_pred             -hhhccccCCCCCcccccccchhHHHHHHhcCCCCCCH-HHHHHHHHhcC-CCEEEecCCCHHHHHHHHHCCCCEEEEcC
Confidence             00000000   0 0                  00122 45666666543 45666677899999999999999999998


Q ss_pred             CCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         190 GPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       190 a~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+|+..-    ...+++..++.+.     .+|  +.|||-++..+..++.+|||++-+|
T Consensus       283 hGGr~~d----~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iG  337 (383)
T cd03332         283 HGGRQVD----GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIG  337 (383)
T ss_pred             CCCcCCC----CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence            7775310    1123344444441     255  7999999999999999999999777

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=98.59  E-value=4.7e-07  Score=98.01  Aligned_cols=267  Identities=18%  Similarity=0.177  Sum_probs=155.5

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcC---CeEEEc-cC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHG---LFTTIH-KY  364 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~G---glgvih-r~  364 (671)
                      -.||||.|+|.--...+.++|||+++|-     ...++.||+-++|=-.+      +.++|.+-++.|   ++|-.. -.
T Consensus        21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~-----g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~   95 (333)
T TIGR02151        21 TGFDDITLIHNALPEINLDDIDLTTEFL-----GKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAAL   95 (333)
T ss_pred             CCcceEEEecCCCCCCCcccCCCceEEC-----CccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhc
Confidence            5699999999998888889999999985     45689999999996555      778899999999   888765 24


Q ss_pred             CCHHHHHHH--Hhc-Ccccccceeeeccc-----ChhhHHHHHH-cCCcEEEEcccc--c------ccccc--ccccccc
Q psy3862         365 YTLEEWKAF--AVQ-NPDVIKHVADGGCT-----SPGDVAKAMG-AGADFVMLGGMF--A------GHDQS--GGELTNI  425 (671)
Q Consensus       365 ~~~e~~~~~--v~~-~~~~~~~v~~~~~~-----~~~~~~~l~~-aG~d~i~id~~a--~------gh~~~--~~~~~~~  425 (671)
                      .++|.+..+  +++ .|+ .+.++--++.     ..+++.+.++ .++|.+-|. .-  +      ||...  .++.++ 
T Consensus        96 ~~~~~~~~~~~vr~~~~~-~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~-ln~~q~~~~p~g~~~f~~~le~i~-  172 (333)
T TIGR02151        96 KDPETADTFEVVREEAPN-GPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIH-LNVLQELVQPEGDRNFKGWLEKIA-  172 (333)
T ss_pred             cChhhHhHHHHHHHhCCC-CcEEeecCchhhccccHHHHHHHHHHhcCCCEEEc-CcccccccCCCCCcCHHHHHHHHH-
Confidence            456654444  343 333 2222222111     1344555433 467777664 21  1      22111  112222 


Q ss_pred             cccccccccccccccC-ceee--ccccCchhHHH-HHHcCCcEEEECccccCCc---cCCCcEEEeCCeEEEEeeCcccH
Q psy3862         426 EYMFFPLVGDMNSYLG-GVVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGHD---QSGGELIEKDGKKVKLFYGMSST  498 (671)
Q Consensus       426 ~~~~~~~~~~~~~~~~-~~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s---~ctt~~v~~~g~~~k~g~G~~q~  498 (671)
                               .+++.+. .+++  .|+-.+.+.++ +.++|+|+|-|+. ..|++   +...|.........-..+|.|.+
T Consensus       173 ---------~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg-~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~  242 (333)
T TIGR02151       173 ---------EICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG-AGGTSWAQVENYRAKGSNLASFFNDWGIPTA  242 (333)
T ss_pred             ---------HHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC-CCCCcccchhhhcccccccchhhhcccHhHH
Confidence                     2222221 1211  23345777787 4599999999984 33422   11222100000001135677877


Q ss_pred             HHHHhhcccccc-ccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccc
Q psy3862         499 TAMDKHAGGVAE-YRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDT  572 (671)
Q Consensus       499 tAi~~~a~~~~~-y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~  572 (671)
                      .++.+......+ -..++|+   |++..|+.|+|+     ||+|+.+=..-                             
T Consensus       243 ~~l~~~~~~~~~ipVIasGG---I~~~~di~kaLalGAd~V~igr~~L~~~-----------------------------  290 (333)
T TIGR02151       243 ASLLEVRSDAPDAPIIASGG---LRTGLDVAKAIALGADAVGMARPFLKAA-----------------------------  290 (333)
T ss_pred             HHHHHHHhcCCCCeEEEECC---CCCHHHHHHHHHhCCCeehhhHHHHHHH-----------------------------
Confidence            777664320001 0123343   688999999998     33333321100                             


Q ss_pred             hhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccc
Q psy3862         573 VQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL  652 (671)
Q Consensus       573 ~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el  652 (671)
                                                             ..+|       .--+.+.+..+...||..|..+|+++++||
T Consensus       291 ---------------------------------------~~~g-------~~~v~~~i~~~~~eL~~~m~~~G~~~i~el  324 (333)
T TIGR02151       291 ---------------------------------------LDEG-------EEAVIEEIELIIEELKVAMFLTGAKTIAEL  324 (333)
T ss_pred             ---------------------------------------HhcC-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence                                                   0011       112567788999999999999999999999


Q ss_pred             ccccE
Q psy3862         653 PRRAT  657 (671)
Q Consensus       653 ~~~a~  657 (671)
                      +..-.
T Consensus       325 ~~~~~  329 (333)
T TIGR02151       325 KKVPL  329 (333)
T ss_pred             ccCCe
Confidence            86543

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PLN02535 glycolate oxidase

Probab=98.57  E-value=1.8e-06  Score=94.15  Aligned_cols=205  Identities=18%  Similarity=0.184  Sum_probs=124.8

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cC
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KY   88 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n   88 (671)
                      +...|+++.|.|..+.-.  +++|++++|     -+.++..||+++|+...      ++..+|.|.++.|-.-++-  .+
T Consensus        40 N~~af~~~~l~Pr~L~dv--~~~d~~t~~-----lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~  112 (364)
T PLN02535         40 NVQAFRRITFRPRVLVDV--SKIDMSTTI-----LGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMAS  112 (364)
T ss_pred             HHHHHHhCCeecccccCC--CCCCCceEE-----CCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCccc
Confidence            345699999999998764  599999999     48889999999998752      3467888877787665543  46


Q ss_pred             CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHH----HHhCCCceEEEeecc----------CC------------
Q psy3862          89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEYICLDVA----------NG------------  142 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l----~~a~~~~d~Ivld~a----------~G------------  142 (671)
                      +++||..+..    ....=+++-.  . .|.+..+++    -.+.-.+-++++|..          ++            
T Consensus       113 ~slEeva~~~----~~~~wfQlY~--~-~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~  185 (364)
T PLN02535        113 CTVEEVASSC----NAVRFLQLYV--Y-KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGL  185 (364)
T ss_pred             CCHHHHHhcC----CCCeEEEEec--c-CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhh
Confidence            8888865321    1000011100  0 011111111    111000111111110          00            


Q ss_pred             ---------------------C-ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEec
Q psy3862         143 ---------------------Y-TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  200 (671)
Q Consensus       143 ---------------------~-~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~  200 (671)
                                           . +..| +.++++++. ...++++..+.+.+.++.++++|||.|++.+.+|..    +-
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~tW-~~i~~lr~~-~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~----~d  259 (364)
T PLN02535        186 LSTEVVSDKGSGLEAFASETFDASLSW-KDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ----LD  259 (364)
T ss_pred             hccCCCccccccHHHHHHhccCCCCCH-HHHHHHHhc-cCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC----CC
Confidence                                 0 0111 345666553 345688888899999999999999999998765532    00


Q ss_pred             ccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         201 NKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       201 ~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+++..+..+.     .+|  +.|||-++..+..++.+|||+|.||
T Consensus       260 ~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vG  307 (364)
T PLN02535        260 YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVG  307 (364)
T ss_pred             CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            0012233333331     255  7999999999999999999999887

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=98.52  E-value=1.9e-06  Score=94.47  Aligned_cols=211  Identities=18%  Similarity=0.222  Sum_probs=125.5

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEE--eecCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTT--IHKYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgv--Ih~n~   89 (671)
                      .-.|+.+.|.|..+.-.  +++||+|+|     -+.++..||+++|+...      ++..+|.|.++.|-.-+  ...+.
T Consensus        39 ~~af~~~~l~PR~L~dv--~~~d~~t~l-----lG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~  111 (381)
T PRK11197         39 VEDLADIALRQRVLKDM--SDLSLETTL-----FGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC  111 (381)
T ss_pred             HHHHHhcceecccccCC--CCCCCceEE-----CCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcC
Confidence            45699999999998764  699999999     48889999999998752      35678888777775433  34568


Q ss_pred             CHHHHHHhhh----------cCccc----ccc--------eEEec-----CCChhhHH--------HHHHHHHh--CCC-
Q psy3862          90 TLEEWKAFAV----------QNPDV----IKH--------VAVSS-----GISAKDLA--------GLKEILAA--LPE-  131 (671)
Q Consensus        90 ~~Eeq~~~i~----------~~p~~----~~~--------~~v~~-----G~~~~d~~--------rl~~l~~a--~~~-  131 (671)
                      ++||..+...          ++.+.    ++.        +.+.+     |....|..        ....++..  .|. 
T Consensus       112 slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w  191 (381)
T PRK11197        112 PIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQW  191 (381)
T ss_pred             CHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchh
Confidence            8888654310          11110    000        00111     11111100        01111110  000 


Q ss_pred             --------ceEEEeeccC------CC-------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcE
Q psy3862         132 --------IEYICLDVAN------GY-------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADV  184 (671)
Q Consensus       132 --------~d~Ivld~a~------G~-------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~  184 (671)
                              ...-.-+..+      +.             +-.| +.++++++..+ +.+++..|.+.+.++.++++|||.
T Consensus       192 ~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW-~di~~lr~~~~-~pvivKgV~s~~dA~~a~~~Gvd~  269 (381)
T PRK11197        192 AWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISW-KDLEWIRDFWD-GPMVIKGILDPEDARDAVRFGADG  269 (381)
T ss_pred             hhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCH-HHHHHHHHhCC-CCEEEEecCCHHHHHHHHhCCCCE
Confidence                    0000000000      00             0111 33666666543 457777889999999999999999


Q ss_pred             EEECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         185 IKVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       185 IvVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |+|.+.+|+.....    .+++..++.+.     .+|  +.|||-++..+..++.+|||+|-+|
T Consensus       270 I~Vs~hGGr~~d~~----~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iG  329 (381)
T PRK11197        270 IVVSNHGGRQLDGV----LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG  329 (381)
T ss_pred             EEECCCCCCCCCCc----ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEh
Confidence            99988777642111    12333333321     355  7999999999999999999999777

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=98.49  E-value=2.3e-06  Score=93.33  Aligned_cols=204  Identities=21%  Similarity=0.211  Sum_probs=125.3

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecC
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKY   88 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n   88 (671)
                      +.-.|+++.|+|..+.-.  +++|++|++     -+.++..||+.+|+...      ++..+|.|.++.|-.-++  ..+
T Consensus        38 N~~af~r~~l~PRvLrdv--~~~d~~t~~-----lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss  110 (367)
T PLN02493         38 NRNAFARILFRPRILIDV--SKIDMTTTV-----LGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT  110 (367)
T ss_pred             HHHHHHhCCeecccccCC--CCCCCceEE-----CCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCccc
Confidence            345699999999998764  699999999     48889999999999862      345688887888765544  456


Q ss_pred             CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHH----HHhCCCceEEEeeccC-----------------------
Q psy3862          89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEYICLDVAN-----------------------  141 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l----~~a~~~~d~Ivld~a~-----------------------  141 (671)
                      +++|+..+.. ..|.   =+++-.-   .|.+..+++    -.+.-.+-++++|...                       
T Consensus       111 ~slEeva~~~-~~~~---wfQlY~~---~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~  183 (367)
T PLN02493        111 SSVEEVASTG-PGIR---FFQLYVY---KNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNF  183 (367)
T ss_pred             CCHHHHHhcC-CCCc---EEEEeec---CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhh
Confidence            8899865431 1010   0111000   000000011    0110000111111100                       


Q ss_pred             --------------C----------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862         142 --------------G----------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT  197 (671)
Q Consensus       142 --------------G----------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t  197 (671)
                                    +          ....| +.++++|+.. ..++++-.|.+.+.++.++++|||.|+|.+.+|...  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW-~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql--  259 (367)
T PLN02493        184 EGLDLGKMDEANDSGLASYVAGQIDRTLSW-KDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL--  259 (367)
T ss_pred             hhccccCCCcccchhHHHHHhhcCCCCCCH-HHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC--
Confidence                          0          01112 3366666543 245667777899999999999999999998777431  


Q ss_pred             EecccC-Ccchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKT-SDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~-~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                         +.. +++.+++.+.     .+|  +.|||-++..+.-++.+||+++.||
T Consensus       260 ---d~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iG  308 (367)
T PLN02493        260 ---DYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG  308 (367)
T ss_pred             ---CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence               111 2344444331     245  7999999999999999999999777

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=98.48  E-value=1.5e-06  Score=89.61  Aligned_cols=174  Identities=21%  Similarity=0.246  Sum_probs=108.8

Q ss_pred             eEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHH-----------HHh------------hhcCcccccceEEec-
Q psy3862          58 PIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEW-----------KAF------------AVQNPDVIKHVAVSS-  112 (671)
Q Consensus        58 Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq-----------~~~------------i~~~p~~~~~~~v~~-  112 (671)
                      ||+-+||.++|+.+++.++++..|++++.. |...+..           .+|            +.+..+...++.+++ 
T Consensus         1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~   80 (233)
T cd02911           1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR   80 (233)
T ss_pred             CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence            789999999999999999999999999964 3221111           011            111111112455544 


Q ss_pred             CCChhhHHHHHHHHHhCCCceEEEeecc----------CC-----CChHHHHHHHHHHHh-CCCceEEEEEe--ccHHHH
Q psy3862         113 GISAKDLAGLKEILAALPEIEYICLDVA----------NG-----YTQTFVDFVRRIREM-YPKHVIIAGNV--VTGEMV  174 (671)
Q Consensus       113 G~~~~d~~rl~~l~~a~~~~d~Ivld~a----------~G-----~~~~~~~~ik~lr~~-~P~~~li~g~v--~t~e~a  174 (671)
                      |.+++++.++.+.++.  ..+.+-+|..          .|     +++.+.+.++.+++. .|...++-.+.  .+.+.+
T Consensus        81 g~~~~~~~~aa~~~~~--~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la  158 (233)
T cd02911          81 SSSLEPLLNAAALVAK--NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEELA  158 (233)
T ss_pred             CCCHHHHHHHHHHHhh--cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHH
Confidence            4556666665555554  2355544422          01     134456666666653 57666665443  467888


Q ss_pred             HHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         175 EELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       175 ~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +.|.++|+|.|.++......        ..++..+..+. .+|  ..|+|.|.+.++++++.|||+|.||
T Consensus       159 ~~l~~aG~d~ihv~~~~~g~--------~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG  220 (233)
T cd02911         159 RLIEKAGADIIHVDAMDPGN--------HADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVA  220 (233)
T ss_pred             HHHHHhCCCEEEECcCCCCC--------CCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence            99999999999775422100        11222333332 355  5899999999999999999999999

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=98.47  E-value=1.6e-06  Score=94.63  Aligned_cols=214  Identities=22%  Similarity=0.239  Sum_probs=122.7

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEee--cC
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KY   88 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh--~n   88 (671)
                      ....||++.|+|+.+.-  .+++||+|+|     -+.+++.||+++||+...      +..+|.+.++.|-.-++.  ..
T Consensus        26 N~~af~~i~l~prvL~d--v~~~D~st~~-----lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~   98 (356)
T PF01070_consen   26 NREAFDRIRLRPRVLRD--VSDPDTSTTF-----LGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSS   98 (356)
T ss_dssp             HHHGGGGEEE---SSSB--GSS-BSSEEE-----TTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCS
T ss_pred             HHHHHHHhcccccccCC--cccCCCCeee-----CCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCcc
Confidence            34679999999999954  4699999999     489999999999998642      357889888888665554  45


Q ss_pred             CCHHHHHHhhhcCcccccceEEecCCChhh-HHHHHHHHHhCCCceE--EEeeccC------------------------
Q psy3862          89 YTLEEWKAFAVQNPDVIKHVAVSSGISAKD-LAGLKEILAALPEIEY--ICLDVAN------------------------  141 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d-~~rl~~l~~a~~~~d~--Ivld~a~------------------------  141 (671)
                      .++|+..+... .|.-   +.+..--..+. .+.++..-.+  +.++  +++|...                        
T Consensus        99 ~~~e~ia~~~~-~~~~---~Qly~~~d~~~~~~~i~rAe~a--G~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~  172 (356)
T PF01070_consen   99 ASLEEIAAASG-GPLW---FQLYPPRDRELTRDLIRRAEAA--GAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLL  172 (356)
T ss_dssp             SCHHHHHHHCT-SEEE---EEEEGBSSHHHHHHHHHHHHHT--TCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGT
T ss_pred             CCHHHHHhhcc-CCeE---EEEEEecCHHHHHHHHHHhhcC--CCCEEEEECcCcccCCcccccccccCCCccccccccc
Confidence            77777544311 1100   01100000000 0111111111  1111  1111110                        


Q ss_pred             ----------------------C--------------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEE
Q psy3862         142 ----------------------G--------------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVI  185 (671)
Q Consensus       142 ----------------------G--------------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~I  185 (671)
                                            .              ....| +.++++++..+ .+++.=.|.+.+.++.|.++|||.|
T Consensus       173 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~~i~~~~~~~~-~pvivKgv~~~~da~~~~~~G~~~i  250 (356)
T PF01070_consen  173 DGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTW-DDIEWIRKQWK-LPVIVKGVLSPEDAKRAVDAGVDGI  250 (356)
T ss_dssp             TTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SH-HHHHHHHHHCS-SEEEEEEE-SHHHHHHHHHTT-SEE
T ss_pred             ccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCH-HHHHHHhcccC-CceEEEecccHHHHHHHHhcCCCEE
Confidence                                  0              01123 44777766543 3455555689999999999999999


Q ss_pred             EECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCc
Q psy3862         186 KVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGY  258 (671)
Q Consensus       186 vVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~  258 (671)
                      +|.+.+|.+.    -.-.+++..+..+.     .+|  +-|||-++-.+.-++.+||++|                |+|+
T Consensus       251 ~vs~hGGr~~----d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v----------------~igr  310 (356)
T PF01070_consen  251 DVSNHGGRQL----DWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAV----------------GIGR  310 (356)
T ss_dssp             EEESGTGTSS----TTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEE----------------EESH
T ss_pred             EecCCCcccC----ccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeE----------------EEcc
Confidence            9988888641    00012333333332     234  7999999999999999999998                5668


Q ss_pred             chhhhHH
Q psy3862         259 PQFSAVL  265 (671)
Q Consensus       259 ~~~~~~~  265 (671)
                      |.+.++.
T Consensus       311 ~~l~~l~  317 (356)
T PF01070_consen  311 PFLYALA  317 (356)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888774

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=98.43  E-value=3.4e-06  Score=91.84  Aligned_cols=205  Identities=22%  Similarity=0.185  Sum_probs=118.8

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n~   89 (671)
                      .--|+.+.|.|..+...  +++|++|+|     -+.++..|++++||...      ++..+|.+.++.|-.-++  ..++
T Consensus        41 ~~a~~~~~l~prvL~dv--~~~d~~t~~-----lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~  113 (351)
T cd04737          41 TRAFNHKQIVPRVLQGV--ESPDTSTEL-----LGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNT  113 (351)
T ss_pred             HHHHHhcCeechhccCC--CCCCCceEe-----CCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCC
Confidence            45699999999998764  589999999     48889999999999863      235688877777655443  3568


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhHH----HHHHHHHhCCCceEEEeec--------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLA----GLKEILAALPEIEYICLDV--------------------------  139 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~----rl~~l~~a~~~~d~Ivld~--------------------------  139 (671)
                      ++||..+..   |....-+++-.  . .|.+    .++..-.+.-.+-++++|.                          
T Consensus       114 s~Eei~~~~---~~~~~wfQlY~--~-~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~  187 (351)
T cd04737         114 SLEEIAKAS---NGGPKWFQLYM--S-KDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHF  187 (351)
T ss_pred             CHHHHHHhc---CCCCeEEEEee--c-CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhh
Confidence            888865431   10000011000  0 0000    0000000000000111111                          


Q ss_pred             ----cCC--C---------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862         140 ----ANG--Y---------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS  204 (671)
Q Consensus       140 ----a~G--~---------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~  204 (671)
                          ..+  .         ...| +.++++++..+ ..+++-.+.+.+.++.++++|||.|++...+|+..-..    .+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~lr~~~~-~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~----~~  261 (351)
T cd04737         188 SEGTGKGKGISEIYAAAKQKLSP-ADIEFIAKISG-LPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGG----PA  261 (351)
T ss_pred             ccccccCcchhhhhhhccCCCCH-HHHHHHHHHhC-CcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCC----ch
Confidence                000  0         0111 44556655432 23444446789999999999999999986555421000    01


Q ss_pred             cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ++..++.+.     .+|  +.|||-++..+..++++|||+|.+|
T Consensus       262 ~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iG  305 (351)
T cd04737         262 SFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVG  305 (351)
T ss_pred             HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            222222231     255  7999999999999999999999888

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=98.38  E-value=6.2e-06  Score=89.92  Aligned_cols=213  Identities=17%  Similarity=0.247  Sum_probs=125.2

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecC
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKY   88 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n   88 (671)
                      +.-.|+++.|+|..+.-.  +++||+|+|     -+.++..||+++|+...      ++..+|.|.++.|-.-++  ..+
T Consensus        32 N~~af~~~~l~PRvLr~v--~~~d~~ttl-----lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss  104 (361)
T cd04736          32 NRDAFDRWRFIPRRLVDV--SKRDISASL-----FGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASN  104 (361)
T ss_pred             HHHHHHHcCccccccCCC--CCCCCceeE-----CCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCC
Confidence            346799999999998764  689999999     48889999999998762      345688877777755443  356


Q ss_pred             CCHHHHHHhhh---------cCccc----ccc--------eEEec-----CCChhhHH---------HHHHHHHh--CC-
Q psy3862          89 YTLEEWKAFAV---------QNPDV----IKH--------VAVSS-----GISAKDLA---------GLKEILAA--LP-  130 (671)
Q Consensus        89 ~~~Eeq~~~i~---------~~p~~----~~~--------~~v~~-----G~~~~d~~---------rl~~l~~a--~~-  130 (671)
                      +++||..+...         .+.+.    +++        +.+.+     |...+|..         ....+...  .| 
T Consensus       105 ~siEeva~a~~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~  184 (361)
T cd04736         105 MSIEDVARQADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPR  184 (361)
T ss_pred             CCHHHHHhhcCCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCch
Confidence            88998654310         00000    000        00100     11111110         00000000  00 


Q ss_pred             --------CceEE-Eeecc--------------CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE
Q psy3862         131 --------EIEYI-CLDVA--------------NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV  187 (671)
Q Consensus       131 --------~~d~I-vld~a--------------~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV  187 (671)
                              +..-. -....              ++.+.-..+.++++++.+|...++. .+.+.++++.++++|||.|++
T Consensus       185 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK-gV~~~eda~~a~~~G~d~I~V  263 (361)
T cd04736         185 WLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK-GIVTAEDAKRCIELGADGVIL  263 (361)
T ss_pred             hhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe-cCCCHHHHHHHHHCCcCEEEE
Confidence                    00000 00000              0001111246788888787544444 578999999999999999999


Q ss_pred             CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         188 GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       188 dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+|+....    ..+++..+..+.   .+|  +-|||-++..+..++.+|||+|-||
T Consensus       264 SnhGGrqld~----~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iG  318 (361)
T cd04736         264 SNHGGRQLDD----AIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLG  318 (361)
T ss_pred             CCCCcCCCcC----CccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            8777754210    012233333332   144  7999999999999999999999776

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=98.33  E-value=2.1e-06  Score=93.74  Aligned_cols=257  Identities=22%  Similarity=0.244  Sum_probs=155.4

Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTL  367 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~  367 (671)
                      .|+.+.|+|..  +..-+++|+++++=     ...+..||+-|||-      .=+|..+|++-++.|-.-++-  -++++
T Consensus        41 af~r~~l~PRv--Lrdv~~~d~~t~~l-----G~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~sl  113 (367)
T PLN02493         41 AFARILFRPRI--LIDVSKIDMTTTVL-----GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSV  113 (367)
T ss_pred             HHHhCCeeccc--ccCCCCCCCceEEC-----CccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCH
Confidence            48899999986  22336889999983     45678999999864      346778999999999888885  57899


Q ss_pred             HHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEc--ccccccccccc----------ccccc---------
Q psy3862         368 EEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLG--GMFAGHDQSGG----------ELTNI---------  425 (671)
Q Consensus       368 e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id--~~a~gh~~~~~----------~~~~~---------  425 (671)
                      ||..+. ..-+--.+ ++..--..+.+-+++..++|+..|++.  ....|+-+.-.          .+...         
T Consensus       114 Eeva~~-~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~  192 (367)
T PLN02493        114 EEVAST-GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMD  192 (367)
T ss_pred             HHHHhc-CCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCC
Confidence            998764 21111111 000000011122344467898888773  11122211100          00000         


Q ss_pred             ----------c------ccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862         426 ----------E------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGK  487 (671)
Q Consensus       426 ----------~------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~  487 (671)
                                .      ..-.-.+.|+++.++- +|.-|+. +.+-++ ++++|+|+|.|+.  .|+     |       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~-~~~dA~~a~~~Gvd~I~Vsn--hGG-----r-------  257 (367)
T PLN02493        193 EANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL-TGEDARIAIQAGAAGIIVSN--HGA-----R-------  257 (367)
T ss_pred             cccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC-CHHHHHHHHHcCCCEEEECC--CCC-----C-------
Confidence                      0      0011235667777754 7788864 555555 7899999999985  441     1       


Q ss_pred             EEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEE
Q psy3862         488 KVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFI  560 (671)
Q Consensus       488 ~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv  560 (671)
                        ++..+.+.+.++.++..+.. +. ...+|+   |+++.||.|||+     |++|+++--..                 
T Consensus       258 --qld~~~~t~~~L~ei~~av~~~~~vi~dGG---Ir~G~Dv~KALALGA~aV~iGr~~l~~l-----------------  315 (367)
T PLN02493        258 --QLDYVPATISALEEVVKATQGRIPVFLDGG---VRRGTDVFKALALGASGIFIGRPVVFSL-----------------  315 (367)
T ss_pred             --CCCCchhHHHHHHHHHHHhCCCCeEEEeCC---cCcHHHHHHHHHcCCCEEEEcHHHHHHH-----------------
Confidence              12345566777666543321 11 123443   799999999999     44444332110                 


Q ss_pred             EecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhh
Q psy3862         561 RCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSA  640 (671)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~  640 (671)
                                                                         ...|      ..| ++++|..+..-|+..
T Consensus       316 ---------------------------------------------------~~~G------~~g-v~~~l~~l~~el~~~  337 (367)
T PLN02493        316 ---------------------------------------------------AAEG------EAG-VRKVLQMLRDEFELT  337 (367)
T ss_pred             ---------------------------------------------------HhcC------HHH-HHHHHHHHHHHHHHH
Confidence                                                               0111      134 788899999999999


Q ss_pred             ccccCcccccccccc
Q psy3862         641 CTYVGASKLKELPRR  655 (671)
Q Consensus       641 m~y~Ga~~l~el~~~  655 (671)
                      |..+|.++++||++.
T Consensus       338 m~l~G~~~i~~l~~~  352 (367)
T PLN02493        338 MALSGCRSLKEISRN  352 (367)
T ss_pred             HHHhCCCCHHHhChh
Confidence            999999999999763

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=98.32  E-value=1.8e-05  Score=86.59  Aligned_cols=207  Identities=15%  Similarity=0.109  Sum_probs=121.5

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEe--ecCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTI--HKYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvI--h~n~   89 (671)
                      .-.|+++.|+|..+.-.  +++|++|+|-     +.++..||+.+|+...      ++..+|.|.++.|-.-++  ..++
T Consensus        49 ~~af~~~~l~PR~L~dv--~~~d~~t~ll-----G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~  121 (367)
T TIGR02708        49 IRAFNHKLIVPHLLQDV--ENPSTEIEFL-----GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTA  121 (367)
T ss_pred             HHHHHhcCeecccccCC--CCCCCceeeC-----CcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccC
Confidence            35699999999998764  6999999994     7889999999999863      246788888888765444  3568


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhH--HHHHHHHHhCCCceEEEeecc---------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL--AGLKEILAALPEIEYICLDVA---------------------------  140 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~--~rl~~l~~a~~~~d~Ivld~a---------------------------  140 (671)
                      ++|+..+..   +....-+++-.. ..+++  +.++..-.+.-.+-++++|..                           
T Consensus       122 slEev~~~~---~~~~~wfQlY~~-~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~  197 (367)
T TIGR02708       122 DLPEISEAL---NGTPHWFQFYMS-KDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLP  197 (367)
T ss_pred             CHHHHHhhc---CCCceEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcc
Confidence            898865431   110011111000 00000  011111111001111222210                           


Q ss_pred             -------------CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcch
Q psy3862         141 -------------NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFF  207 (671)
Q Consensus       141 -------------~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~  207 (671)
                                   ......| +.++++++..+ ..+++-.+.+.+.++.++++|||.|+|.+.+|....    ....++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~w-~~i~~l~~~~~-~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~----~~~a~~~  271 (367)
T TIGR02708       198 TGAGKSMDNVYKSAKQKLSP-RDIEEIAGYSG-LPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLD----GGPAAFD  271 (367)
T ss_pred             cCCccchhhhccccCCCCCH-HHHHHHHHhcC-CCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCC----CCCcHHH
Confidence                         0001122 44666665432 234444577899999999999999999776663210    0011222


Q ss_pred             hhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         208 LIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       208 ~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .++.+.     .+|  +-|||-++.-+..++++|||+|-||
T Consensus       272 ~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~ig  312 (367)
T TIGR02708       272 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALG  312 (367)
T ss_pred             HHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEc
Confidence            222221     245  7999999999999999999999554

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PLN02979 glycolate oxidase

Probab=98.31  E-value=2.2e-05  Score=85.40  Aligned_cols=195  Identities=22%  Similarity=0.225  Sum_probs=118.7

Q ss_pred             eEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEee--cCCCHHHHH
Q psy3862          24 VMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYYTLEEWK   95 (671)
Q Consensus        24 v~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh--~n~~~Eeq~   95 (671)
                      +.|.|..+.-.  +++|+++++     -+.++..|++.+|+...      ++..+|.|.++.|-.-++-  .+.++|+..
T Consensus        44 ~~lrPRvLrdv--~~~dtst~l-----lG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa  116 (366)
T PLN02979         44 CDFRPRILIDV--SKIDMTTTV-----LGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA  116 (366)
T ss_pred             eEEECccccCC--CCCCCceEE-----CCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHH
Confidence            67889988654  699999999     48889999999999852      3467888888887665543  458888865


Q ss_pred             HhhhcCcccccceEEecCCChhhHHHHHHH----HHhCCCceE--EEeeccC----------------------------
Q psy3862          96 AFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEY--ICLDVAN----------------------------  141 (671)
Q Consensus        96 ~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l----~~a~~~~d~--Ivld~a~----------------------------  141 (671)
                      +.. ..+.   =+++-.  . .|.+...++    -.+  +.++  +++|...                            
T Consensus       117 ~a~-~~~~---wfQLY~--~-~Dr~~~~~ll~RA~~a--G~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~  187 (366)
T PLN02979        117 STG-PGIR---FFQLYV--Y-KNRNVVEQLVRRAERA--GFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL  187 (366)
T ss_pred             hcc-CCCe---EEEEee--c-CCHHHHHHHHHHHHHc--CCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence            331 0010   001000  0 000000000    011  1111  1111100                            


Q ss_pred             ---------C----------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc
Q psy3862         142 ---------G----------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK  202 (671)
Q Consensus       142 ---------G----------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~  202 (671)
                               +          -+..| +.++++|+.. ...+++..|.+.+.|+.++++|||.|+|.+.+|...     +.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~ltW-~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql-----d~  260 (366)
T PLN02979        188 GKMDEANDSGLASYVAGQIDRTLSW-KDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL-----DY  260 (366)
T ss_pred             cCCCcccchhHHHHHhhcCCCCCCH-HHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC-----CC
Confidence                     0          01122 3466666543 245677777899999999999999999998877541     11


Q ss_pred             C-Ccchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         203 T-SDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       203 ~-~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      . +++..++.+.     .+|  +.|||-++..+.-++.+|||++-||
T Consensus       261 ~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iG  307 (366)
T PLN02979        261 VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG  307 (366)
T ss_pred             chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence            1 2233333331     244  7999999999999999999999777

>PLN02535 glycolate oxidase

Probab=98.30  E-value=1.5e-06  Score=94.96  Aligned_cols=254  Identities=17%  Similarity=0.194  Sum_probs=153.6

Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTL  367 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~  367 (671)
                      .|+.+.|+|..  +..-+++|++++|=     ...+..||.-||+-      .-+|..+|++=++.|-.-++-  -++++
T Consensus        43 af~~~~l~Pr~--L~dv~~~d~~t~~l-----G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~sl  115 (364)
T PLN02535         43 AFRRITFRPRV--LVDVSKIDMSTTIL-----GYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTV  115 (364)
T ss_pred             HHHhCCeeccc--ccCCCCCCCceEEC-----CccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCH
Confidence            48899999986  33335889999974     45678999988753      446788999999999988886  57899


Q ss_pred             HHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEc--cc---------ccccccccc-ccc-------
Q psy3862         368 EEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLG--GM---------FAGHDQSGG-ELT-------  423 (671)
Q Consensus       368 e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id--~~---------a~gh~~~~~-~~~-------  423 (671)
                      ||..+.- .-+    .+.---...+     +-+++..++|...||+.  ..         -+|.+.-.. ++.       
T Consensus       116 Eeva~~~-~~~----~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~  190 (364)
T PLN02535        116 EEVASSC-NAV----RFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV  190 (364)
T ss_pred             HHHHhcC-CCC----eEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence            9987531 111    1110011122     22344457898888874  11         112110000 000       


Q ss_pred             ---------ccc------ccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862         424 ---------NIE------YMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK  487 (671)
Q Consensus       424 ---------~~~------~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~  487 (671)
                               ...      ....-.++++++.++ ++++.|+....+..++.++|+|+|.|..  .|+     |       
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn--~GG-----r-------  256 (364)
T PLN02535        191 VSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN--HGA-----R-------  256 (364)
T ss_pred             CccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeC--CCc-----C-------
Confidence                     000      001123455666654 3778886444444447899999999874  441     2       


Q ss_pred             EEEEeeCcccHHHHHhhccccccc--cccCCceEeeecCCCHHHHHHH-----HHhhHhHhccccCcccccccCCcceEE
Q psy3862         488 KVKLFYGMSSTTAMDKHAGGVAEY--RAAEGKTVQVPYRGDVNDTVQD-----ILGGLRSACTYVGASKLKELPRRATFI  560 (671)
Q Consensus       488 ~~k~g~G~~q~tAi~~~a~~~~~y--~~~~G~~v~i~~~Gdi~kAiav-----MlG~~~ag~~e~~g~~i~e~~~~a~fv  560 (671)
                        +++++.+.+.++.++..+....  ...+|+   |+++.||.|||+-     ++|+++-                    
T Consensus       257 --~~d~~~~t~~~L~ev~~av~~~ipVi~dGG---Ir~g~Dv~KALalGA~aV~vGr~~l--------------------  311 (364)
T PLN02535        257 --QLDYSPATISVLEEVVQAVGGRVPVLLDGG---VRRGTDVFKALALGAQAVLVGRPVI--------------------  311 (364)
T ss_pred             --CCCCChHHHHHHHHHHHHHhcCCCEEeeCC---CCCHHHHHHHHHcCCCEEEECHHHH--------------------
Confidence              2356777778887765433211  134443   7999999999993     3333321                    


Q ss_pred             EecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhh
Q psy3862         561 RCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSA  640 (671)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~  640 (671)
                                                |+..+                      .|.+       -+++.+..+...|+..
T Consensus       312 --------------------------~~l~~----------------------~g~~-------gv~~~l~~l~~el~~~  336 (364)
T PLN02535        312 --------------------------YGLAA----------------------KGED-------GVRKVIEMLKDELEIT  336 (364)
T ss_pred             --------------------------hhhhh----------------------ccHH-------HHHHHHHHHHHHHHHH
Confidence                                      11111                      1111       1677888899999999


Q ss_pred             ccccCcccccccccc
Q psy3862         641 CTYVGASKLKELPRR  655 (671)
Q Consensus       641 m~y~Ga~~l~el~~~  655 (671)
                      |..+|..+++||+..
T Consensus       337 m~l~G~~~i~el~~~  351 (364)
T PLN02535        337 MALSGCPSVKDITRS  351 (364)
T ss_pred             HHHhCCCCHHHhhhh
Confidence            999999999999763

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=98.28  E-value=4.3e-07  Score=98.96  Aligned_cols=193  Identities=16%  Similarity=0.245  Sum_probs=95.8

Q ss_pred             cccCCCcccCceEEecCCCccc-cH----HHHHHHHHcCCeEEeecC---CCHHHHH---Hh-hh--------cCccccc
Q psy3862          47 FRNSGKTYQGVPIIAANMDTVG-TF----EMAKHLAKHGLFTTIHKY---YTLEEWK---AF-AV--------QNPDVIK  106 (671)
Q Consensus        47 ~r~~~~~~l~~Piv~a~M~~vt-~~----~lA~Ala~~gglgvIh~n---~~~Eeq~---~~-i~--------~~p~~~~  106 (671)
                      .+..+++.+.+||++++|.+++ +.    .||.++.+.|.  ..|.|   +++|+..   +. +.        ..++.+.
T Consensus        56 ~~~~~p~~l~~p~~is~MS~GaLS~~a~~Ala~ga~~~G~--~~ntGEGg~~~~~~~~~~~~~I~Q~~sg~fGv~~~~l~  133 (368)
T PF01645_consen   56 EKVEKPLELSIPFMISAMSYGALSEEAKEALAKGANMAGT--ASNTGEGGELPEERKAAKDLRIKQIASGRFGVRPEYLK  133 (368)
T ss_dssp             GGS--HHHHHTTEEEEEB-CTTC-HHHHHHHHHHHHHCT---EEEETTT---GGGCSB-TTSSEEEE-TT-TT--HHHHC
T ss_pred             hhcCChhhheeeeecccCChhhcCHHHHHHHHHHHHHhCc--eEecCCCCCCHHHhcccCCceEEEcCCCCCCCCHHHhc
Confidence            3445789999999999999975 33    35555555552  23433   4444321   11 11        0111111


Q ss_pred             ce---EE--e----cC----CChhh-HHHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhC---CCceEEEEE
Q psy3862         107 HV---AV--S----SG----ISAKD-LAGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMY---PKHVIIAGN  167 (671)
Q Consensus       107 ~~---~v--~----~G----~~~~d-~~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~---P~~~li~g~  167 (671)
                      ++   .+  +    +|    ++... .+++.++....|+.+.++-...++.  .+++.++|.++|+..   |...++++.
T Consensus       134 ~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~  213 (368)
T PF01645_consen  134 QADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAG  213 (368)
T ss_dssp             C-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-S
T ss_pred             CCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCC
Confidence            11   11  1    11    11111 2455566666678888877666554  378889999998765   455677654


Q ss_pred             eccHHHHHHHHHCCCcEEEECcCCCce-EEEE-ecccC--Ccchhhhhcc----------cc--CCccccccHHHHHHHH
Q psy3862         168 VVTGEMVEELILSGADVIKVGIGPGSV-CTTR-LKNKT--SDFFLIQFYS----------CI--PQAGNVVTGEMVEELI  231 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdga~G~~-~~t~-v~~~~--~~~~~i~~i~----------~~--p~aGnV~t~~~a~~li  231 (671)
                      -.....+..+.++|+|+|.+||++|.. .+.. ..+.+  |....+..+.          .+  .+.|++.|+..+.-++
T Consensus       214 ~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal  293 (368)
T PF01645_consen  214 RGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL  293 (368)
T ss_dssp             TTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH
T ss_pred             CcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH
Confidence            333333444889999999999977653 3332 22221  2221111110          11  2799999999999999


Q ss_pred             HcCCCEEEEc
Q psy3862         232 LSGADVIKVG  241 (671)
Q Consensus       232 ~aGAdgvkVG  241 (671)
                      .+|||+|-+|
T Consensus       294 aLGAD~v~ig  303 (368)
T PF01645_consen  294 ALGADAVYIG  303 (368)
T ss_dssp             HCT-SEEE-S
T ss_pred             hcCCCeeEec
Confidence            9999999888

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=98.26  E-value=4.3e-06  Score=91.15  Aligned_cols=256  Identities=17%  Similarity=0.199  Sum_probs=153.1

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCC------CCCCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANM------DTVGTFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~M------DtV~~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      -.|+.+.|+|..=  ..-+++||+++|=     ...+..||+-|||      ..=+|..+|++-+++|-.-++-  -++|
T Consensus        34 ~af~~~~l~PRvL--r~v~~~d~~ttll-----G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s  106 (361)
T cd04736          34 DAFDRWRFIPRRL--VDVSKRDISASLF-----GKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS  106 (361)
T ss_pred             HHHHHcCcccccc--CCCCCCCCceeEC-----CccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC
Confidence            4689999999862  2225789999973     3556799998875      5567888999999999988887  6889


Q ss_pred             HHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc--cccccccc----ccc------------c-------
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG--GMFAGHDQ----SGG------------E-------  421 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id--~~a~gh~~----~~~------------~-------  421 (671)
                      +||..+.. .-+.-.+....--..+.+-+++..+||.+.||+-  -...|.-+    +..            +       
T Consensus       107 iEeva~a~-~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w  185 (361)
T cd04736         107 IEDVARQA-DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRW  185 (361)
T ss_pred             HHHHHhhc-CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchh
Confidence            99998653 1121112111001111122344456787777763  11112210    000            0       


Q ss_pred             -----------ccccc--------------------ccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEEC
Q psy3862         422 -----------LTNIE--------------------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLG  468 (671)
Q Consensus       422 -----------~~~~~--------------------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG  468 (671)
                                 +.+..                    ......++++++.++. +|+.|+ .+.+-++ ++++|+|+|.|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         186 LLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILS  264 (361)
T ss_pred             hhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEEC
Confidence                       00000                    0011245666776654 777885 5666666 789999999998


Q ss_pred             ccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHhcc
Q psy3862         469 GMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACT  543 (671)
Q Consensus       469 ~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~  543 (671)
                      . -.|     ++.   +       ...+.+.++.++..+..--...+|+   |++++||+|||+     ||+|+++--. 
T Consensus       265 n-hGG-----rql---d-------~~~~~~~~L~ei~~~~~~~vi~dGG---Ir~g~Dv~KALaLGA~aV~iGr~~l~~-  324 (361)
T cd04736         265 N-HGG-----RQL---D-------DAIAPIEALAEIVAATYKPVLIDSG---IRRGSDIVKALALGANAVLLGRATLYG-  324 (361)
T ss_pred             C-CCc-----CCC---c-------CCccHHHHHHHHHHHhCCeEEEeCC---CCCHHHHHHHHHcCCCEEEECHHHHHH-
Confidence            5 333     111   1       1234455665543322211234443   799999999999     4555444111 


Q ss_pred             ccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccc
Q psy3862         544 YVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYR  623 (671)
Q Consensus       544 e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~k  623 (671)
                                                                   -.                      ..|.+      
T Consensus       325 ---------------------------------------------la----------------------~~G~~------  331 (361)
T cd04736         325 ---------------------------------------------LA----------------------ARGEA------  331 (361)
T ss_pred             ---------------------------------------------HH----------------------hcCHH------
Confidence                                                         00                      01111      


Q ss_pred             cCHHHHHHHHHHHHhhhccccCcccccccc
Q psy3862         624 GDVNDTVQDILGGLRSACTYVGASKLKELP  653 (671)
Q Consensus       624 G~v~~~l~~l~gGLrs~m~y~Ga~~l~el~  653 (671)
                       -+++++..|..-|+..|..+|.++++||.
T Consensus       332 -gv~~~l~~l~~el~~~m~l~G~~~i~~l~  360 (361)
T cd04736         332 -GVSEVLRLLKEEIDRTLALIGCPDIASLT  360 (361)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence             26778899999999999999999999985

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=98.26  E-value=4.4e-06  Score=91.71  Aligned_cols=256  Identities=21%  Similarity=0.228  Sum_probs=150.5

Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCC------CCCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANM------DTVGTFEMAKHLAKHGLFTTIH--KYYTL  367 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~M------DtV~~~~mA~~la~~Gglgvih--r~~~~  367 (671)
                      .|+.+.|+|..=  ..-+++||+++|=     ...+..||+-|||      +-=+|..+|++=++.|-.-++-  -.+++
T Consensus        41 af~~~~l~PR~L--~dv~~~d~~t~ll-----G~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~sl  113 (381)
T PRK11197         41 DLADIALRQRVL--KDMSDLSLETTLF-----GEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPI  113 (381)
T ss_pred             HHHhcceecccc--cCCCCCCCceEEC-----CcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCH
Confidence            488999999762  2336889999973     4567899999886      3447889999999999987776  57789


Q ss_pred             HHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEcccc---cccccc--------c-------cccc-----
Q psy3862         368 EEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLGGMF---AGHDQS--------G-------GELT-----  423 (671)
Q Consensus       368 e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id~~a---~gh~~~--------~-------~~~~-----  423 (671)
                      ||..+.- .-+--.+ ++-.--..+.+-+++..++|...||+. +-   .|.-++        .       .+..     
T Consensus       114 Eeia~~~-~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlT-VD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w  191 (381)
T PRK11197        114 EEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFT-VDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQW  191 (381)
T ss_pred             HHHHhcc-CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchh
Confidence            9997642 1111011 000000001122344456898888874 22   232210        0       0000     


Q ss_pred             --------------cccc----------------c------ccccccccccccC-ceeeccccCchhHHH-HHHcCCcEE
Q psy3862         424 --------------NIEY----------------M------FFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFV  465 (671)
Q Consensus       424 --------------~~~~----------------~------~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V  465 (671)
                                    +...                .      -.-+++|+++.++ .+|+.|+ .+.+-++ ++++|||+|
T Consensus       192 ~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV-~s~~dA~~a~~~Gvd~I  270 (381)
T PRK11197        192 AWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI-LDPEDARDAVRFGADGI  270 (381)
T ss_pred             hhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec-CCHHHHHHHHhCCCCEE
Confidence                          0000                0      0011455565554 3777885 5555555 789999999


Q ss_pred             EECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhH
Q psy3862         466 MLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGL  538 (671)
Q Consensus       466 ~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~  538 (671)
                      .|+.  .|+.    +.   +       --.+.+.++.+...+.. +. ...+|+   |+++.||+|||+     ||+|++
T Consensus       271 ~Vs~--hGGr----~~---d-------~~~~t~~~L~~i~~a~~~~~~vi~dGG---Ir~g~Di~KALaLGA~~V~iGr~  331 (381)
T PRK11197        271 VVSN--HGGR----QL---D-------GVLSSARALPAIADAVKGDITILADSG---IRNGLDVVRMIALGADTVLLGRA  331 (381)
T ss_pred             EECC--CCCC----CC---C-------CcccHHHHHHHHHHHhcCCCeEEeeCC---cCcHHHHHHHHHcCcCceeEhHH
Confidence            9984  4411    11   0       01233444333222211 11 134443   799999999999     666666


Q ss_pred             hHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceE
Q psy3862         539 RSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTV  618 (671)
Q Consensus       539 ~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~  618 (671)
                      +-..-.                                                                    ..|   
T Consensus       332 ~l~~la--------------------------------------------------------------------~~G---  340 (381)
T PRK11197        332 FVYALA--------------------------------------------------------------------AAG---  340 (381)
T ss_pred             HHHHHH--------------------------------------------------------------------hcc---
Confidence            633210                                                                    011   


Q ss_pred             ecccccCHHHHHHHHHHHHhhhccccCcccccccccc
Q psy3862         619 QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR  655 (671)
Q Consensus       619 ~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~  655 (671)
                          .--+.+.|..|..-|+..|..+|+++++||++.
T Consensus       341 ----~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~  373 (381)
T PRK11197        341 ----QAGVANLLDLIEKEMRVAMTLTGAKSISEITRD  373 (381)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHh
Confidence                112667889999999999999999999999763

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=98.26  E-value=2.7e-06  Score=92.87  Aligned_cols=257  Identities=17%  Similarity=0.177  Sum_probs=152.0

Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTL  367 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~  367 (671)
                      .|+++.|+|..  +..-+++|++++|=     ...+..||+-|||-      .=++..+|++=+++|-.-++-  -++++
T Consensus        51 af~~~~l~PR~--L~dv~~~d~~t~ll-----G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~sl  123 (367)
T TIGR02708        51 AFNHKLIVPHL--LQDVENPSTEIEFL-----GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADL  123 (367)
T ss_pred             HHHhcCeeccc--ccCCCCCCCceeeC-----CcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCH
Confidence            48899999986  22335789999974     35678999999874      445788999999999988886  57889


Q ss_pred             HHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEcccc---ccccc----c----c---------------c
Q psy3862         368 EEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLGGMF---AGHDQ----S----G---------------G  420 (671)
Q Consensus       368 e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id~~a---~gh~~----~----~---------------~  420 (671)
                      ||..+....-+--.+ ++..--..+.+-+++..++|...|++. +-   .|.-+    +    .               .
T Consensus       124 Eev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlT-vD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~  202 (367)
T TIGR02708       124 PEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLT-ADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGK  202 (367)
T ss_pred             HHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCcchhhhhcCCCCCCccchhhhhcccCCcc
Confidence            998764211111111 010000011122344467899888874 22   12110    0    0               0


Q ss_pred             ccccccc-----cccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862         421 ELTNIEY-----MFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       421 ~~~~~~~-----~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~  493 (671)
                      ..-+...     ...-.+.++++.++ .+++-|+ .+.+.++ +.++|+|+|.|+.  .|     +|.         ...
T Consensus       203 ~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv-~~~eda~~a~~~Gvd~I~VS~--HG-----Grq---------~~~  265 (367)
T TIGR02708       203 SMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGP-QCPEDADRALKAGASGIWVTN--HG-----GRQ---------LDG  265 (367)
T ss_pred             chhhhccccCCCCCHHHHHHHHHhcCCCEEEeCC-CCHHHHHHHHHcCcCEEEECC--cC-----ccC---------CCC
Confidence            0000000     00013445566654 3677774 5566666 6799999999985  33     121         223


Q ss_pred             CcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccc
Q psy3862         494 GMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQL  566 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~  566 (671)
                      +.+...++.+...+.. +. ...+|.   |++..|+.|||+     ||+|+++--.                        
T Consensus       266 ~~a~~~~L~ei~~av~~~i~vi~dGG---Ir~g~Dv~KaLalGAd~V~igR~~l~~------------------------  318 (367)
T TIGR02708       266 GPAAFDSLQEVAEAVDKRVPIVFDSG---VRRGQHVFKALASGADLVALGRPVIYG------------------------  318 (367)
T ss_pred             CCcHHHHHHHHHHHhCCCCcEEeeCC---cCCHHHHHHHHHcCCCEEEEcHHHHHH------------------------
Confidence            4445566665543321 10 124443   799999999999     3444333111                        


Q ss_pred             cccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCc
Q psy3862         567 NNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA  646 (671)
Q Consensus       567 ~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga  646 (671)
                                   +                               +..|.+       -+++++..|...||..|..+|+
T Consensus       319 -------------l-------------------------------a~~G~~-------gv~~~l~~l~~El~~~M~l~G~  347 (367)
T TIGR02708       319 -------------L-------------------------------ALGGSQ-------GARQVFEYLNKELKRVMQLTGT  347 (367)
T ss_pred             -------------H-------------------------------HhcCHH-------HHHHHHHHHHHHHHHHHHHhCC
Confidence                         0                               011111       2578889999999999999999


Q ss_pred             ccccccccc
Q psy3862         647 SKLKELPRR  655 (671)
Q Consensus       647 ~~l~el~~~  655 (671)
                      ++++||++.
T Consensus       348 ~~i~eL~~~  356 (367)
T TIGR02708       348 QTIEDVKGF  356 (367)
T ss_pred             CCHHHhCcc
Confidence            999999764

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=98.24  E-value=3.6e-06  Score=92.53  Aligned_cols=258  Identities=16%  Similarity=0.156  Sum_probs=154.6

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      -.|+++.|+|..  +..-+++|++++|=     ...+..||.-|||-      .=+|..+|++=++.|-.-++-  -.++
T Consensus        55 ~af~~~~l~PRv--L~dv~~~dt~t~ll-----G~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~s  127 (383)
T cd03332          55 DAFSRWRIVPRM--LRGVTERDLSVELF-----GRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSS  127 (383)
T ss_pred             HHHHhcCccccc--cccCCCCCCceeeC-----CccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCC
Confidence            348899999976  22335889999983     45678999999864      445888999999999999996  5689


Q ss_pred             HHHHHHHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEcc-c----------cccccccc--ccc---c------
Q psy3862         367 LEEWKAFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLGG-M----------FAGHDQSG--GEL---T------  423 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id~-~----------a~gh~~~~--~~~---~------  423 (671)
                      +||..+...+-+--.+ ++...-..+.+-+++..++|++.||+.- +          -++.....  ..+   .      
T Consensus       128 lEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~  207 (383)
T cd03332         128 IEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFR  207 (383)
T ss_pred             HHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhh
Confidence            9998765211111111 1100000111223444578999998851 0          01110000  000   0      


Q ss_pred             --------cc--------------------cccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccC
Q psy3862         424 --------NI--------------------EYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAG  473 (671)
Q Consensus       424 --------~~--------------------~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G  473 (671)
                              +.                    .......++++++.++ .+|..|+ .+.+-++ ++++|+|+|.|..  .|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV-~~~~dA~~a~~~G~d~I~vsn--hG  284 (383)
T cd03332         208 KKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI-LHPDDARRAVEAGVDGVVVSN--HG  284 (383)
T ss_pred             hccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecC-CCHHHHHHHHHCCCCEEEEcC--CC
Confidence                    00                    0001123344455443 3777886 5555555 7899999999985  44


Q ss_pred             CccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccC
Q psy3862         474 HDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVG  546 (671)
Q Consensus       474 ~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~  546 (671)
                      +     |.         ...+.|.+.++.+...+..+ . ...+|+   |+++.||+|||+     |++|.++--.    
T Consensus       285 G-----r~---------~d~~~~t~~~L~ei~~~~~~~~~vi~dGG---Ir~G~Dv~KALaLGA~~v~iGr~~l~~----  343 (383)
T cd03332         285 G-----RQ---------VDGSIAALDALPEIVEAVGDRLTVLFDSG---VRTGADIMKALALGAKAVLIGRPYAYG----  343 (383)
T ss_pred             C-----cC---------CCCCcCHHHHHHHHHHHhcCCCeEEEeCC---cCcHHHHHHHHHcCCCEEEEcHHHHHH----
Confidence            1     21         12367788887765443321 1 123332   799999999999     4444443211    


Q ss_pred             cccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCH
Q psy3862         547 ASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDV  626 (671)
Q Consensus       547 g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v  626 (671)
                                                                -.                      ..|.+       -+
T Consensus       344 ------------------------------------------l~----------------------~~G~~-------gv  352 (383)
T cd03332         344 ------------------------------------------LA----------------------LGGED-------GV  352 (383)
T ss_pred             ------------------------------------------HH----------------------hccHH-------HH
Confidence                                                      00                      01111       17


Q ss_pred             HHHHHHHHHHHhhhccccCccccccccc
Q psy3862         627 NDTVQDILGGLRSACTYVGASKLKELPR  654 (671)
Q Consensus       627 ~~~l~~l~gGLrs~m~y~Ga~~l~el~~  654 (671)
                      ++.+..+...|+..|..+|.++++||++
T Consensus       353 ~~~l~~l~~El~~~m~l~G~~~i~~l~~  380 (383)
T cd03332         353 EHVLRNLLAELDLTMGLAGIRSIAELTR  380 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence            7889999999999999999999999975

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=98.21  E-value=4.8e-06  Score=85.05  Aligned_cols=182  Identities=21%  Similarity=0.128  Sum_probs=106.3

Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCccccc-ceee--eccc---Ch-hhHHHHHHcCC
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDVIK-HVAD--GGCT---SP-GDVAKAMGAGA  403 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~~~-~v~~--~~~~---~~-~~~~~l~~aG~  403 (671)
                      ..||+.+||+.+++++||+++++.|++|++| ++.+++++.+.+++.++... .+..  ....   .. +.++.+.++|+
T Consensus         2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~   81 (236)
T cd04730           2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGV   81 (236)
T ss_pred             CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCC
Confidence            3799999999999999999999999999999 67788888777766543221 1111  1111   12 33455678999


Q ss_pred             cEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEE
Q psy3862         404 DFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       404 d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      |.|.+.+.   .+.   +.          ++.++++--.+  ...+.+.+.++ +.+.|+|++.+...++|   ..+.. 
T Consensus        82 d~v~l~~~---~~~---~~----------~~~~~~~~i~~--i~~v~~~~~~~~~~~~gad~i~~~~~~~~---G~~~~-  139 (236)
T cd04730          82 PVVSFSFG---PPA---EV----------VERLKAAGIKV--IPTVTSVEEARKAEAAGADALVAQGAEAG---GHRGT-  139 (236)
T ss_pred             CEEEEcCC---CCH---HH----------HHHHHHcCCEE--EEeCCCHHHHHHHHHcCCCEEEEeCcCCC---CCCCc-
Confidence            99998522   111   11          11222211111  22234444445 56899999887421222   11100 


Q ss_pred             EeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                                ...+....+.++.....--....|+   |....|+.+++.     +|+|+.+..+.|+|..
T Consensus       140 ----------~~~~~~~~i~~i~~~~~~Pvi~~GG---I~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~  197 (236)
T cd04730         140 ----------FDIGTFALVPEVRDAVDIPVIAAGG---IADGRGIAAALALGADGVQMGTRFLATEESGAS  197 (236)
T ss_pred             ----------cccCHHHHHHHHHHHhCCCEEEECC---CCCHHHHHHHHHcCCcEEEEchhhhcCcccCCC
Confidence                      1123344555432211110112222   566688999887     8999999999988766

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PLN02979 glycolate oxidase

Probab=98.14  E-value=1e-05  Score=88.03  Aligned_cols=254  Identities=21%  Similarity=0.214  Sum_probs=151.4

Q ss_pred             eeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCCHHHHH
Q psy3862         300 VMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYTLEEWK  371 (671)
Q Consensus       300 Vll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~~e~~~  371 (671)
                      +.|+|..  +..-+++|++++|=     ...+..||+-|||-      .=+|..+|++-++.|-.-++-  -..++||..
T Consensus        44 ~~lrPRv--Lrdv~~~dtst~ll-----G~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa  116 (366)
T PLN02979         44 CDFRPRI--LIDVSKIDMTTTVL-----GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA  116 (366)
T ss_pred             eEEECcc--ccCCCCCCCceEEC-----CcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHH
Confidence            4677764  22336889999974     45678999999864      346778999999999998886  567899987


Q ss_pred             HHHhcCccccc-ceeeecccChhhHHHHHHcCCcEEEEc--cccccccccc----------cccccc-------------
Q psy3862         372 AFAVQNPDVIK-HVADGGCTSPGDVAKAMGAGADFVMLG--GMFAGHDQSG----------GELTNI-------------  425 (671)
Q Consensus       372 ~~v~~~~~~~~-~v~~~~~~~~~~~~~l~~aG~d~i~id--~~a~gh~~~~----------~~~~~~-------------  425 (671)
                      +. ..-+--.+ ++..--..+.+-+++..++|.+.|++.  ....|.-+.-          +.+.+.             
T Consensus       117 ~a-~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~  195 (366)
T PLN02979        117 ST-GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEAND  195 (366)
T ss_pred             hc-cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccc
Confidence            64 21111011 000000011122344467899888874  1112221000          000000             


Q ss_pred             ------c------ccccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862         426 ------E------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF  492 (671)
Q Consensus       426 ------~------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g  492 (671)
                            .      ....-.++|+++.++- +|+-|+....+..+++++|+|+|.|+.  .|+     |         ++.
T Consensus       196 ~~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsn--hGG-----r---------qld  259 (366)
T PLN02979        196 SGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSN--HGA-----R---------QLD  259 (366)
T ss_pred             hhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECC--CCc-----C---------CCC
Confidence                  0      0011345667777753 788886544444458899999999985  341     1         122


Q ss_pred             eCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         493 YGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       493 ~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      .+.+.+.++.+++.+.. +. ...+|+   |+++.||+||++     |++|+++--.-                      
T Consensus       260 ~~p~t~~~L~ei~~~~~~~~~Vi~dGG---Ir~G~Di~KALALGAdaV~iGrp~L~~l----------------------  314 (366)
T PLN02979        260 YVPATISALEEVVKATQGRIPVFLDGG---VRRGTDVFKALALGASGIFIGRPVVFSL----------------------  314 (366)
T ss_pred             CchhHHHHHHHHHHHhCCCCeEEEeCC---cCcHHHHHHHHHcCCCEEEEcHHHHHHH----------------------
Confidence            34456677766543321 11 123443   799999999999     44444432110                      


Q ss_pred             ccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccC
Q psy3862         566 LNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVG  645 (671)
Q Consensus       566 ~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~G  645 (671)
                                                                    ...|      ..| +++.+..+..-|+..|..+|
T Consensus       315 ----------------------------------------------a~~G------~~G-v~~~l~~l~~El~~~m~l~G  341 (366)
T PLN02979        315 ----------------------------------------------AAEG------EAG-VRKVLQMLRDEFELTMALSG  341 (366)
T ss_pred             ----------------------------------------------HhcC------HHH-HHHHHHHHHHHHHHHHHHhC
Confidence                                                          0112      134 78889999999999999999


Q ss_pred             cccccccccc
Q psy3862         646 ASKLKELPRR  655 (671)
Q Consensus       646 a~~l~el~~~  655 (671)
                      .++++||++.
T Consensus       342 ~~~i~el~~~  351 (366)
T PLN02979        342 CRSLKEISRN  351 (366)
T ss_pred             CCCHHHhChh
Confidence            9999999864

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.02  E-value=8.6e-05  Score=79.07  Aligned_cols=195  Identities=19%  Similarity=0.192  Sum_probs=110.5

Q ss_pred             eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--ee-------c-C--------------------CC
Q psy3862          41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IH-------K-Y--------------------YT   90 (671)
Q Consensus        41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih-------~-n--------------------~~   90 (671)
                      |++++     .+++|+-||+.+++......+....+++. |+|+  +.       . |                    ..
T Consensus         1 l~~~~-----~g~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g   74 (300)
T TIGR01037         1 LEVEL-----FGIRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG   74 (300)
T ss_pred             CcEEE-----CCEECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence            35566     47899999999986444344445556666 4553  30       0 0                    12


Q ss_pred             HHHHHHhhhcCcc-cccceEEec-CCChhhHHHHHHHHHhC-CCceEEEeecc--C---------CCChHHHHHHHHHHH
Q psy3862          91 LEEWKAFAVQNPD-VIKHVAVSS-GISAKDLAGLKEILAAL-PEIEYICLDVA--N---------GYTQTFVDFVRRIRE  156 (671)
Q Consensus        91 ~Eeq~~~i~~~p~-~~~~~~v~~-G~~~~d~~rl~~l~~a~-~~~d~Ivld~a--~---------G~~~~~~~~ik~lr~  156 (671)
                      .+.+.+.++..+. ...|+.+++ |.+++++.++.+.++.. +..+.+-+|..  +         +.++...+.++.+|+
T Consensus        75 ~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~  154 (300)
T TIGR01037        75 VEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKD  154 (300)
T ss_pred             HHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence            3333333322111 112455544 56777776666666532 34677777643  1         123455667777775


Q ss_pred             h--CCCceEEEEEe-ccHHHHHHHHHCCCcEEEECcC-CCce-E-EE---Eeccc---C--Cc-----chhhhhcc---c
Q psy3862         157 M--YPKHVIIAGNV-VTGEMVEELILSGADVIKVGIG-PGSV-C-TT---RLKNK---T--SD-----FFLIQFYS---C  214 (671)
Q Consensus       157 ~--~P~~~li~g~v-~t~e~a~~Li~AGaD~IvVdga-~G~~-~-~t---~v~~~---~--~~-----~~~i~~i~---~  214 (671)
                      .  .|...++..+. ...+.++.|.++|+|.|.+-.. +|.. . .+   .+...   +  +.     +..+..++   .
T Consensus       155 ~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~  234 (300)
T TIGR01037       155 KTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD  234 (300)
T ss_pred             hcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC
Confidence            4  57666665433 2356788899999999987421 1110 0 00   00000   0  10     12222222   2


Q ss_pred             cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         215 IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +|  ..|||.|++.+..++++|||+|.+|
T Consensus       235 ipvi~~GGI~s~~da~~~l~~GAd~V~ig  263 (300)
T TIGR01037       235 IPIIGVGGITSFEDALEFLMAGASAVQVG  263 (300)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence            56  5899999999999999999999988

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=97.96  E-value=2.6e-05  Score=84.36  Aligned_cols=139  Identities=27%  Similarity=0.258  Sum_probs=79.2

Q ss_pred             eCcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCccc------------------c----------
Q psy3862         331 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDV------------------I----------  381 (671)
Q Consensus       331 ~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~------------------~----------  381 (671)
                      ...|||.++|-.+++++||.+.++.||||+|- -+.++|+..+++.+.+++                  .          
T Consensus        10 i~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~   89 (330)
T PF03060_consen   10 IKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGN   89 (330)
T ss_dssp             -SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHH
T ss_pred             CCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHH
Confidence            46899999999999999999999999999999 466887766666443111                  0          


Q ss_pred             -----------c--------------ceeeeccc---------------------ChhhHHHHHHcCCcEEEEccccc-c
Q psy3862         382 -----------K--------------HVADGGCT---------------------SPGDVAKAMGAGADFVMLGGMFA-G  414 (671)
Q Consensus       382 -----------~--------------~v~~~~~~---------------------~~~~~~~l~~aG~d~i~id~~a~-g  414 (671)
                                 +              .+..+.+.                     +.++..++.++|+|+||++|.-. |
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGG  169 (330)
T PF03060_consen   90 AVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGG  169 (330)
T ss_dssp             HHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSE
T ss_pred             HHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCC
Confidence                       0              01111111                     23445556789999999998654 7


Q ss_pred             cccc----ccccccccccccccccccccccC-ceeeccccCchh-HHHHHHcCCcEEEECccccCCccCCC
Q psy3862         415 HDQS----GGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGD-VAKAMGAGADFVMLGGMFAGHDQSGG  479 (671)
Q Consensus       415 h~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~-~a~~l~aGAd~V~vG~~g~G~s~ctt  479 (671)
                      |.-.    ...++..+          ++... .+|.+|=+.++. ++.+|..|||+|.+|.-+-.+.+|+.
T Consensus       170 H~g~~~~~~~~L~~~v----------~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~  230 (330)
T PF03060_consen  170 HRGFEVGSTFSLLPQV----------RDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGA  230 (330)
T ss_dssp             E---SSG-HHHHHHHH----------HHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S
T ss_pred             CCCccccceeeHHHHH----------hhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccC
Confidence            7541    22222222          22222 244444456665 46679999999999964444444443

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=97.94  E-value=3.5e-05  Score=83.91  Aligned_cols=162  Identities=18%  Similarity=0.177  Sum_probs=95.9

Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYYTL  367 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~Gglgvih--r~~~~  367 (671)
                      -|+++.|+|..-.-.  +++||+++|=     ...+..||+-|||=...      +-.+|++=++.|-..++-  ..+++
T Consensus        35 af~~~~l~pr~L~dv--~~~d~~~~~l-----G~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~  107 (344)
T cd02922          35 AFQRIRFRPRVLRDV--EKVDTSTTIL-----GHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSL  107 (344)
T ss_pred             HHHhCceeccccCCC--CCCCCceEEC-----CcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCH
Confidence            489999999873222  6899999973     45688999999998333      348999999999888886  77899


Q ss_pred             HHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEcccc---ccc---------cccc----cc-----
Q psy3862         368 EEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLGGMF---AGH---------DQSG----GE-----  421 (671)
Q Consensus       368 e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id~~a---~gh---------~~~~----~~-----  421 (671)
                      |+..+...  |+. +.+.---.-.+     +-+++..++|++.|++. +-   .|.         ..-.    -+     
T Consensus       108 e~v~~~~~--~~~-~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvlt-vD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~  183 (344)
T cd02922         108 EEIVDARP--PDQ-PLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLT-VDAPVLGKRERDERLKAEEAVSDGPAGKKTKA  183 (344)
T ss_pred             HHHHHhcC--CCC-cEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEE-CCCCCcCcchhhhhhcCCcCcccccccccccc
Confidence            99765421  110 11110000111     22333457899999985 22   121         1000    00     


Q ss_pred             ----ccccc-cc-----ccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         422 ----LTNIE-YM-----FFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       422 ----~~~~~-~~-----~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                          ..... ..     ....+.++++.++ .+++-|+ .+.+.++ +.++|+|+|.|..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsn  242 (344)
T cd02922         184 KGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSN  242 (344)
T ss_pred             ccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEEEC
Confidence                00000 01     1123444555553 3667775 5555555 6899999999975

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=97.94  E-value=1.4e-05  Score=87.47  Aligned_cols=207  Identities=21%  Similarity=0.212  Sum_probs=117.6

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC------CCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT------VGTFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt------V~~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      -.|+++.|+|..-  ..-+++||+++|=     ...+..||+-|||-.      -++-.+|++-++.|-...+=  ...+
T Consensus        28 ~af~~i~l~prvL--~dv~~~D~st~~l-----G~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~  100 (356)
T PF01070_consen   28 EAFDRIRLRPRVL--RDVSDPDTSTTFL-----GQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSAS  100 (356)
T ss_dssp             HGGGGEEE---SS--SBGSS-BSSEEET-----TEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSC
T ss_pred             HHHHHhccccccc--CCcccCCCCeeeC-----CccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCC
Confidence            4599999999985  3336889999984     577899999999852      24567899999999888876  7788


Q ss_pred             HHHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEcccc------------ccccccc-------ccc
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLGGMF------------AGHDQSG-------GEL  422 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id~~a------------~gh~~~~-------~~~  422 (671)
                      +|+..+... .+.    +.--....+     +.+.+.-++|++.|+|+ +-            +|++.-.       .+.
T Consensus       101 ~e~ia~~~~-~~~----~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vt-vD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~  174 (356)
T PF01070_consen  101 LEEIAAASG-GPL----WFQLYPPRDRELTRDLIRRAEAAGAKALVVT-VDAPQEGNRERDLRNGFSVPPKLSPRNLLDG  174 (356)
T ss_dssp             HHHHHHHCT-SEE----EEEEEGBSSHHHHHHHHHHHHHTTCSEEEEE-TSHSSHHHBHHHHHHTCCCSTTHCTTCGTTT
T ss_pred             HHHHHhhcc-CCe----EEEEEEecCHHHHHHHHHHhhcCCCCEEEEE-CcCcccCCcccccccccCCCccccccccccc
Confidence            988876532 111    111111122     22344456899999997 32            1221000       000


Q ss_pred             cc--------------------------ccc------cccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         423 TN--------------------------IEY------MFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       423 ~~--------------------------~~~------~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ..                          ...      .....++++++.++- +|+=|+....++.++.++|+|+|.|+.
T Consensus       175 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~  254 (356)
T PF01070_consen  175 ASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSN  254 (356)
T ss_dssp             TTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEES
T ss_pred             ccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecC
Confidence            00                          000      011123344444443 677776555555558899999999984


Q ss_pred             cccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHHH
Q psy3862         470 MFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQD  533 (671)
Q Consensus       470 ~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAiav  533 (671)
                        .|+    |+          +-+|.+.+.++.+...++. +. ...+|+   |++.-||+|||+-
T Consensus       255 --hGG----r~----------~d~~~~~~~~L~~i~~~~~~~~~i~~dgG---ir~g~Dv~kalaL  301 (356)
T PF01070_consen  255 --HGG----RQ----------LDWGPPTIDALPEIRAAVGDDIPIIADGG---IRRGLDVAKALAL  301 (356)
T ss_dssp             --GTG----TS----------STTS-BHHHHHHHHHHHHTTSSEEEEESS-----SHHHHHHHHHT
T ss_pred             --CCc----cc----------CccccccccccHHHHhhhcCCeeEEEeCC---CCCHHHHHHHHHc
Confidence              551    11          2368888887766544321 11 123443   7899999999983

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=97.88  E-value=4.2e-05  Score=83.58  Aligned_cols=221  Identities=21%  Similarity=0.192  Sum_probs=122.4

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc---cc-H--HHHHHHHHcCCeEEe--ecCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV---GT-F--EMAKHLAKHGLFTTI--HKYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v---t~-~--~lA~Ala~~gglgvI--h~n~   89 (671)
                      ...|+|+.|+|+.++..+  ++||++++     -+.++++|+++++|++.   .. .  --|.+...++-.+++  =..+
T Consensus        33 ~~~f~~i~l~~~~L~~v~--~idlst~~-----~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~  105 (360)
T COG1304          33 REAFEDIALRPRVLPEVD--DIDLSTTF-----LGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQ  105 (360)
T ss_pred             hhhhhhheeecccCCCcc--cCccceEe-----cCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccC
Confidence            369999999999999875  99999999     48899999999999987   32 2  233333334433331  1346


Q ss_pred             CHHHHHHh---h------hc-Ccccc---cceEE-----ecCCChhhHHHHH---HHHHhCCCceEEEeeccCCCC----
Q psy3862          90 TLEEWKAF---A------VQ-NPDVI---KHVAV-----SSGISAKDLAGLK---EILAALPEIEYICLDVANGYT----  144 (671)
Q Consensus        90 ~~Eeq~~~---i------~~-~p~~~---~~~~v-----~~G~~~~d~~rl~---~l~~a~~~~d~Ivld~a~G~~----  144 (671)
                      ++|+..+.   .      ++ +|+..   ++.++     .+.. +.-.+|.+   +.+.+  ....++.+..++..    
T Consensus       106 ~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~-~~~~~r~~d~~~~i~a--~~~~~h~n~~qe~~~p~g  182 (360)
T COG1304         106 RIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDS-PVGGERERDAVNGISA--PALAIHLNVLQEATQPEG  182 (360)
T ss_pred             cHHHhhcCcchhhhhHHHHHhhHHHHHHHHhcCCcceeeccCc-cchHHHHHHHHhccCC--CcccccccHHHHhcCCcc
Confidence            67654211   1      11 12222   11111     1110 01123333   33333  22233443333211    


Q ss_pred             ----hHHHHHHHHHHH-h-CCCce--------------EEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862         145 ----QTFVDFVRRIRE-M-YPKHV--------------IIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS  204 (671)
Q Consensus       145 ----~~~~~~ik~lr~-~-~P~~~--------------li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~  204 (671)
                          ..+.+.+++... . .|...              ++.-.|.+++++..+.+.|+|.|++--.+|.-    +=.-.+
T Consensus       183 ~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrq----lD~g~s  258 (360)
T COG1304         183 DRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQ----LDWGIS  258 (360)
T ss_pred             cccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCcc----ccCCCC
Confidence                112222232211 1 13222              22223456678888888888888775544411    101124


Q ss_pred             cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHH
Q psy3862         205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECA  268 (671)
Q Consensus       205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~  268 (671)
                      ++..++.+.     .+|  +-|||=++--+.-+|++|||++                |+|+|.+.+...--
T Consensus       259 t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v----------------~igrp~L~~l~~~g  313 (360)
T COG1304         259 TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAV----------------GIGRPFLYGLAAGG  313 (360)
T ss_pred             hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchh----------------hhhHHHHHHHHhcc
Confidence            555555553     133  6999999999999999999988                67788887766544

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=97.87  E-value=5.7e-05  Score=75.36  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCce--EEEEecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEE
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSV--CTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      .+.+++|+++|++.|.++..+...  .+..+++.+|+         ++ -+|+|.|.+++..++++|||++-
T Consensus        19 ~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~---------~~iGag~v~~~~~~~~a~~~Ga~~i~   81 (190)
T cd00452          19 LALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPE---------ALIGAGTVLTPEQADAAIAAGAQFIV   81 (190)
T ss_pred             HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence            477889999999999887654321  11112222221         11 48899999999999999999994

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.74  E-value=0.00039  Score=73.49  Aligned_cols=189  Identities=18%  Similarity=0.184  Sum_probs=105.4

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEE--e---------------------------------ec----CCCH
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--I---------------------------------HK----YYTL   91 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--I---------------------------------h~----n~~~   91 (671)
                      .+++|+-||+.++.......++...+...| +|.  +                                 +.    |..+
T Consensus         4 ~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~   82 (289)
T cd02810           4 LGLKLKNPFGVAAGPLLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGL   82 (289)
T ss_pred             CCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCH
Confidence            368889999999887766666666566653 321  1                                 10    1223


Q ss_pred             HHHHHhhhcC-cc-cccceEEecC-CChhhHHHHHHHHHhCCCceEEEeecc--CC--------CChHHHHHHHHHHHh-
Q psy3862          92 EEWKAFAVQN-PD-VIKHVAVSSG-ISAKDLAGLKEILAALPEIEYICLDVA--NG--------YTQTFVDFVRRIREM-  157 (671)
Q Consensus        92 Eeq~~~i~~~-p~-~~~~~~v~~G-~~~~d~~rl~~l~~a~~~~d~Ivld~a--~G--------~~~~~~~~ik~lr~~-  157 (671)
                      |++.+.+.+. .. ...|+.++++ .+++++.++.+.+... +.+++-++..  +.        .++.+.+.++.+++. 
T Consensus        83 ~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~-G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~  161 (289)
T cd02810          83 DVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERA-GAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV  161 (289)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence            3333333211 11 1234555443 4566664444433331 5677766543  11        124455667777764 


Q ss_pred             -CCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCCCc-e-EEE----Eeccc---C---C----cchhhhhcc----
Q psy3862         158 -YPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGS-V-CTT----RLKNK---T---S----DFFLIQFYS----  213 (671)
Q Consensus       158 -~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~G~-~-~~t----~v~~~---~---~----~~~~i~~i~----  213 (671)
                       +|...++.....   ..+.++.|.++|||+|++-+.-.. . ...    ..+..   +   +    .+..+..+.    
T Consensus       162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~  241 (289)
T cd02810         162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ  241 (289)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC
Confidence             465556665432   357788999999999998542111 0 000    00000   0   0    111122221    


Q ss_pred             -ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 -CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 -~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .+|  ..|||-|.+.+..++++|||+|.||
T Consensus       242 ~~ipiia~GGI~~~~da~~~l~~GAd~V~vg  272 (289)
T cd02810         242 LDIPIIGVGGIDSGEDVLEMLMAGASAVQVA  272 (289)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence             245  6999999999999999999999888

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=97.74  E-value=0.00012  Score=79.96  Aligned_cols=253  Identities=26%  Similarity=0.304  Sum_probs=146.4

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC------CHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~------~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      -+|+|+.|+|+--.--+  ++||+++|-     ..++..|++=|+|=--+      +.--|+.....|-++++=  -.++
T Consensus        34 ~~f~~i~l~~~~L~~v~--~idlst~~~-----G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~  106 (360)
T COG1304          34 EAFEDIALRPRVLPEVD--DIDLSTTFL-----GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQR  106 (360)
T ss_pred             hhhhhheeecccCCCcc--cCccceEec-----CccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCc
Confidence            58999999998743332  999999985     56789999999996552      222444444444444443  4555


Q ss_pred             HHHHHHHH------hcCcccccceeeecccChhhHHHHHHcCCcEEEEc-----c----------cc----cccc-----
Q psy3862         367 LEEWKAFA------VQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG-----G----------MF----AGHD-----  416 (671)
Q Consensus       367 ~e~~~~~v------~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id-----~----------~a----~gh~-----  416 (671)
                      +|+..+..      ...++.          .++=+.+..++|++-|+..     +          ..    ..|.     
T Consensus       107 ie~~~~~~~~q~y~~~~R~~----------~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe  176 (360)
T COG1304         107 IEEVAAAPPFQLYFSKDREF----------APNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQE  176 (360)
T ss_pred             HHHhhcCcchhhhhHHHHHh----------hHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHH
Confidence            55543211      000000          0000112234455555541     0          00    0010     


Q ss_pred             --------cccc---cccccc-ccccc-----cccccccccCc-eeeccccCchhHHHHHHcCCcEEEECccccCCccCC
Q psy3862         417 --------QSGG---ELTNIE-YMFFP-----LVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG  478 (671)
Q Consensus       417 --------~~~~---~~~~~~-~~~~~-----~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ct  478 (671)
                              ....   .+..+. +...|     .+.++++++.. ++.-|+..+.|+..+-.+|+|.|-|-.  .|.    
T Consensus       177 ~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsn--hgg----  250 (360)
T COG1304         177 ATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSN--HGG----  250 (360)
T ss_pred             hcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEc--CCC----
Confidence                    0000   000000 11222     23334444433 667786666888888899999998876  331    


Q ss_pred             CcEEEeCCeEEEEeeCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccccc
Q psy3862         479 GELIEKDGKKVKLFYGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLK  551 (671)
Q Consensus       479 t~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~  551 (671)
                       |         ++=+|.+++.++.++..+..+ . ...+|+   |++.=|++||||     +++|.++-..-.       
T Consensus       251 -r---------qlD~g~st~~~L~ei~~av~~~~~vi~dGG---iR~G~Dv~KAlALGA~~v~igrp~L~~l~-------  310 (360)
T COG1304         251 -R---------QLDWGISTADSLPEIVEAVGDRIEVIADGG---IRSGLDVAKALALGADAVGIGRPFLYGLA-------  310 (360)
T ss_pred             -c---------cccCCCChHHHHHHHHHHhCCCeEEEecCC---CCCHHHHHHHHHhCCchhhhhHHHHHHHH-------
Confidence             2         344788999888877665542 1 124443   788999999999     777777632210       


Q ss_pred             ccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHH
Q psy3862         552 ELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQ  631 (671)
Q Consensus       552 e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~  631 (671)
                                                                                   ..|.       .-+.+.|.
T Consensus       311 -------------------------------------------------------------~~g~-------~GV~~~le  322 (360)
T COG1304         311 -------------------------------------------------------------AGGE-------AGVERVLE  322 (360)
T ss_pred             -------------------------------------------------------------hccH-------HHHHHHHH
Confidence                                                                         0111       12567889


Q ss_pred             HHHHHHhhhccccCcccccccccccEE
Q psy3862         632 DILGGLRSACTYVGASKLKELPRRATF  658 (671)
Q Consensus       632 ~l~gGLrs~m~y~Ga~~l~el~~~a~F  658 (671)
                      .+...|+.+|.-+|+++|+||++..-+
T Consensus       323 ~~~~El~~~M~L~G~~~i~el~~~~l~  349 (360)
T COG1304         323 IIRKELKIAMALTGAKNIEELKRVPLV  349 (360)
T ss_pred             HHHHHHHHHHHhcCCCcHHHhccCcee
Confidence            999999999999999999999876443

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=97.72  E-value=9.4e-05  Score=82.12  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             eeCcceEecCCC-CCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862         330 YQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ  376 (671)
Q Consensus       330 ~~~iPiIaa~MD-tV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~  376 (671)
                      -+..|||.++|- .+++++|+.++++.||||++- -++++|+..+.|.+
T Consensus        11 giryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~   59 (418)
T cd04742          11 GLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIER   59 (418)
T ss_pred             CCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHH
Confidence            356899999998 799999999999999999999 67788776665543

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=97.71  E-value=7.4e-05  Score=81.52  Aligned_cols=256  Identities=19%  Similarity=0.203  Sum_probs=146.4

Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC------CCCHHHHHHHHHcCCeEEEc--cCCCH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT------VGTFEMAKHLAKHGLFTTIH--KYYTL  367 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt------V~~~~mA~~la~~Gglgvih--r~~~~  367 (671)
                      .|+.+.|+|..=  ..-+++|++++|=     ...+..||+-|||-.      =++..+|++=++.|-.-++-  -.+++
T Consensus        43 a~~~~~l~prvL--~dv~~~d~~t~~l-----G~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~  115 (351)
T cd04737          43 AFNHKQIVPRVL--QGVESPDTSTELL-----GIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSL  115 (351)
T ss_pred             HHHhcCeechhc--cCCCCCCCceEeC-----CccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCH
Confidence            488999999862  2235789999873     456789999998753      34567888888888888765  57889


Q ss_pred             HHHHHHHhcCcccccc-eeeecccChhhHHHHHHcCCcEEEEcccc---ccccccccc----------ccccc-------
Q psy3862         368 EEWKAFAVQNPDVIKH-VADGGCTSPGDVAKAMGAGADFVMLGGMF---AGHDQSGGE----------LTNIE-------  426 (671)
Q Consensus       368 e~~~~~v~~~~~~~~~-v~~~~~~~~~~~~~l~~aG~d~i~id~~a---~gh~~~~~~----------~~~~~-------  426 (671)
                      ||..+.-..-+..++. +..--...++-+++..++|+..|++. +-   .|+-+.-..          .....       
T Consensus       116 Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlT-vD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~  194 (351)
T cd04737         116 EEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILT-ADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKG  194 (351)
T ss_pred             HHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe-cCCCCCCcchHHHHhcCCCCcccchhhhhccccccC
Confidence            9987642111111110 00000011222344457788877774 21   122100000          00000       


Q ss_pred             -------c-----cccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862         427 -------Y-----MFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF  492 (671)
Q Consensus       427 -------~-----~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g  492 (671)
                             .     .....+.++++.++ .++.-|+ .+.+-++ +.++|||+|.|..  .|     ++.         +.
T Consensus       195 ~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsn--hG-----Gr~---------ld  257 (351)
T cd04737         195 KGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGI-QSPEDADVAINAGADGIWVSN--HG-----GRQ---------LD  257 (351)
T ss_pred             cchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecC-CCHHHHHHHHHcCCCEEEEeC--CC-----Ccc---------CC
Confidence                   0     01122335666654 3666664 5556555 6899999999974  33     121         11


Q ss_pred             eCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         493 YGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       493 ~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      .+.+...++.+.+.+... . ...+|.   |++..|++|||+     ||+|..+                          
T Consensus       258 ~~~~~~~~l~~i~~a~~~~i~vi~dGG---Ir~g~Di~kaLalGA~~V~iGr~~--------------------------  308 (351)
T cd04737         258 GGPASFDSLPEIAEAVNHRVPIIFDSG---VRRGEHVFKALASGADAVAVGRPV--------------------------  308 (351)
T ss_pred             CCchHHHHHHHHHHHhCCCCeEEEECC---CCCHHHHHHHHHcCCCEEEECHHH--------------------------
Confidence            233445555554333211 0 123332   789999999998     3333322                          


Q ss_pred             ccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccC
Q psy3862         566 LNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVG  645 (671)
Q Consensus       566 ~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~G  645 (671)
                                          .||.+.                      .|.+       -+++.+..|..-|+..|..+|
T Consensus       309 --------------------l~~la~----------------------~G~~-------gv~~~l~~l~~El~~~m~l~G  339 (351)
T cd04737         309 --------------------LYGLAL----------------------GGAQ-------GVASVLEHLNKELKIVMQLAG  339 (351)
T ss_pred             --------------------HHHHhh----------------------chHH-------HHHHHHHHHHHHHHHHHHHHC
Confidence                                122111                      1211       177888999999999999999


Q ss_pred             ccccccccc
Q psy3862         646 ASKLKELPR  654 (671)
Q Consensus       646 a~~l~el~~  654 (671)
                      +++++||++
T Consensus       340 ~~~i~el~~  348 (351)
T cd04737         340 TRTIEDVKR  348 (351)
T ss_pred             CCCHHHhCC
Confidence            999999975

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=97.66  E-value=0.00043  Score=74.94  Aligned_cols=197  Identities=15%  Similarity=0.093  Sum_probs=103.8

Q ss_pred             CCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--eec--------------------------
Q psy3862          36 RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IHK--------------------------   87 (671)
Q Consensus        36 ~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih~--------------------------   87 (671)
                      ..+.||++++     .+++|+-||+.++- .....+....+... |+|.  +..                          
T Consensus        34 ~~~~~L~~~~-----~Gl~l~nPi~~AsG-~~~~~~~~~~~~~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~  106 (327)
T cd04738          34 YDDPRLEVEV-----FGLTFPNPVGLAAG-FDKNAEAIDALLAL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR  106 (327)
T ss_pred             CCCCCcceEE-----CCEECCCCCEeCcC-CCCCHHHHHHHHHC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeec
Confidence            3678899999     58999999988764 33344444444543 4432  110                          


Q ss_pred             ----CCCHHHHHHhhhcCcccccceEEecCCC--------hhhHHHHHHHHHhCCCceEEEeeccCC---------CChH
Q psy3862          88 ----YYTLEEWKAFAVQNPDVIKHVAVSSGIS--------AKDLAGLKEILAALPEIEYICLDVANG---------YTQT  146 (671)
Q Consensus        88 ----n~~~Eeq~~~i~~~p~~~~~~~v~~G~~--------~~d~~rl~~l~~a~~~~d~Ivld~a~G---------~~~~  146 (671)
                          |..+|.+.+.+++......|+.++++-+        .+|+.++.+.+..  .++++-+|..--         ++..
T Consensus       107 ~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~--~ad~ielN~scP~~~g~~~~~~~~~  184 (327)
T cd04738         107 MGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP--YADYLVVNVSSPNTPGLRDLQGKEA  184 (327)
T ss_pred             CCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh--hCCEEEEECCCCCCCccccccCHHH
Confidence                1112333333322111123455554322        2333332222232  367777664211         1234


Q ss_pred             HHHHHHHHHHh-------CCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCC-CceEEE--Eecc---cC--C----
Q psy3862         147 FVDFVRRIREM-------YPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGP-GSVCTT--RLKN---KT--S----  204 (671)
Q Consensus       147 ~~~~ik~lr~~-------~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~-G~~~~t--~v~~---~~--~----  204 (671)
                      +.+.++.+++.       .|...++..+..   ..+.++.|.++|||.|++-..- +-.-..  ..+.   -+  +    
T Consensus       185 ~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~  264 (327)
T cd04738         185 LRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKE  264 (327)
T ss_pred             HHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhH
Confidence            45556665532       576667764432   3567888999999999864310 000000  0000   00  0    


Q ss_pred             -cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         205 -DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       205 -~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .+..+..++     .+|  ..|||-|++.+..++.+|||+|.||
T Consensus       265 ~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg  309 (327)
T cd04738         265 RSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY  309 (327)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence             011222221     245  6999999999999999999999998

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=97.63  E-value=0.0016  Score=69.52  Aligned_cols=195  Identities=18%  Similarity=0.229  Sum_probs=110.0

Q ss_pred             eeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--eec----------------------------CC
Q psy3862          40 DITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IHK----------------------------YY   89 (671)
Q Consensus        40 dlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih~----------------------------n~   89 (671)
                      ||++++     .+++|+-||+.++-......++...+++.| +|.  +..                            |.
T Consensus         1 ~l~~~~-----~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~   74 (301)
T PRK07259          1 RLSVEL-----PGLKLKNPVMPASGTFGFGGEYARFYDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP   74 (301)
T ss_pred             CCceEE-----CCEECCCCcEECCcCCCCCHHHHHHhhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence            678888     489999999998754454556666555543 332  210                            12


Q ss_pred             CHHHHHHhhhcC-cccccceEEec-CCChhhHHHHHHHHHhCCC-ceEEEeec-----cC-CC-----ChHHHHHHHHHH
Q psy3862          90 TLEEWKAFAVQN-PDVIKHVAVSS-GISAKDLAGLKEILAALPE-IEYICLDV-----AN-GY-----TQTFVDFVRRIR  155 (671)
Q Consensus        90 ~~Eeq~~~i~~~-p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~-~d~Ivld~-----a~-G~-----~~~~~~~ik~lr  155 (671)
                      .++++.+.++.. .....|+.+++ |.+++++.++.+.++.. + .|.+-++.     .+ |.     ++...+.++.++
T Consensus        75 g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~a-G~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr  153 (301)
T PRK07259         75 GVDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKA-PNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK  153 (301)
T ss_pred             CHHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhcc-CCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence            233333333211 11123455554 45667776555555432 4 77876643     33 21     244566677776


Q ss_pred             Hh--CCCceEEEEEec-cHHHHHHHHHCCCcEEEE-CcCCCce-EE-E---Eeccc---------CC-cchhhhhcc---
Q psy3862         156 EM--YPKHVIIAGNVV-TGEMVEELILSGADVIKV-GIGPGSV-CT-T---RLKNK---------TS-DFFLIQFYS---  213 (671)
Q Consensus       156 ~~--~P~~~li~g~v~-t~e~a~~Li~AGaD~IvV-dga~G~~-~~-t---~v~~~---------~~-~~~~i~~i~---  213 (671)
                      +.  +|...++..+.. ..+.++.|.++|+|.|++ .+.+|.. -. +   .+...         .| .+..+..++   
T Consensus       154 ~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~  233 (301)
T PRK07259        154 EVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV  233 (301)
T ss_pred             HhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC
Confidence            54  576666654432 246688899999999876 2122210 00 0   00000         00 122333332   


Q ss_pred             ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 ~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+|  ..|||.|++.+..++.+|||+|.+|
T Consensus       234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~ig  263 (301)
T PRK07259        234 DIPIIGMGGISSAEDAIEFIMAGASAVQVG  263 (301)
T ss_pred             CCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence            356  6999999999999999999999998

>TIGR02814 pfaD_fam PfaD family protein

Probab=97.60  E-value=0.00022  Score=79.74  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=40.4

Q ss_pred             eeCcceEecCCC-CCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862         330 YQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ  376 (671)
Q Consensus       330 ~~~iPiIaa~MD-tV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~  376 (671)
                      -+..|||.++|- .+++++|+.++++.||||++- -+.++|+..+.|.+
T Consensus        16 giryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~   64 (444)
T TIGR02814        16 GVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHR   64 (444)
T ss_pred             CCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHH
Confidence            356799999998 799999999999999999999 57788877666544

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.58  E-value=0.0024  Score=69.21  Aligned_cols=134  Identities=20%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             ceEEec-CCChhhHHHHHHHHHhCCCceEEEeeccC--CCC--------hHHHHHHHHHHHh--CCCceEEEEEec-cHH
Q psy3862         107 HVAVSS-GISAKDLAGLKEILAALPEIEYICLDVAN--GYT--------QTFVDFVRRIREM--YPKHVIIAGNVV-TGE  172 (671)
Q Consensus       107 ~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a~--G~~--------~~~~~~ik~lr~~--~P~~~li~g~v~-t~e  172 (671)
                      |+.+++ |.+++++.++.+.++.. +++++-++...  ..+        +.+.+.++.+++.  .|...|+..+.. ..+
T Consensus       101 pvi~si~g~~~~~~~~~a~~~~~~-gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~  179 (325)
T cd04739         101 PVIASLNGVSAGGWVDYARQIEEA-GADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAH  179 (325)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHH
Confidence            444443 44555565554444432 57888777642  111        2345666776653  477777776543 467


Q ss_pred             HHHHHHHCCCcEEEECcCCCc--eEEE--Eeccc--C--C-----cchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862         173 MVEELILSGADVIKVGIGPGS--VCTT--RLKNK--T--S-----DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG  234 (671)
Q Consensus       173 ~a~~Li~AGaD~IvVdga~G~--~~~t--~v~~~--~--~-----~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG  234 (671)
                      .++.|.++|||.|++-.....  +-..  .....  +  +     .+..+..+.   .+|  ..|||-|++.+...|.+|
T Consensus       180 ~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG  259 (325)
T cd04739         180 MAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAG  259 (325)
T ss_pred             HHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcC
Confidence            888999999999988432111  1000  00000  0  0     011111111   356  699999999999999999


Q ss_pred             CCEEEEc
Q psy3862         235 ADVIKVG  241 (671)
Q Consensus       235 AdgvkVG  241 (671)
                      ||+|.||
T Consensus       260 A~~Vqv~  266 (325)
T cd04739         260 ADVVMTT  266 (325)
T ss_pred             CCeeEEe
Confidence            9999999

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.57  E-value=0.0039  Score=63.21  Aligned_cols=69  Identities=22%  Similarity=0.285  Sum_probs=50.9

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEE
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK  186 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~Iv  186 (671)
                      +.+.++. +.++.+++.  +...+-+..   .+.+..+.++++++.||...+-+|.|.|.+++++++++|+++|+
T Consensus        16 ~~~~e~a~~~~~al~~~--Gi~~iEit~---~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv   85 (204)
T TIGR01182        16 IDDVDDALPLAKALIEG--GLRVLEVTL---RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV   85 (204)
T ss_pred             cCCHHHHHHHHHHHHHc--CCCEEEEeC---CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence            3444443 456667776  666554432   24667888999988899877778899999999999999999993

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=97.57  E-value=0.0048  Score=61.58  Aligned_cols=109  Identities=26%  Similarity=0.340  Sum_probs=76.9

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.++.+. +.++.+++.  +++.+-+...+   .+..+.++.+++.||...+-+|.+.+.++++.++++|+|+|...   
T Consensus        12 ~~~~~~~~~~~~~l~~~--G~~~vev~~~~---~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p---   83 (190)
T cd00452          12 GDDAEDALALAEALIEG--GIRAIEITLRT---PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP---   83 (190)
T ss_pred             cCCHHHHHHHHHHHHHC--CCCEEEEeCCC---hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC---
Confidence            4444443 567777777  77888777543   44777888888889976677788999999999999999999642   


Q ss_pred             CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +..           ..+++...  ..|+-=|+.|.+.+..++++|||-+++
T Consensus        84 ~~~-----------~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~  123 (190)
T cd00452          84 GLD-----------PEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKL  123 (190)
T ss_pred             CCC-----------HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEE
Confidence            211           11111111  123223777999999999999999986

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=97.55  E-value=0.0023  Score=65.22  Aligned_cols=160  Identities=23%  Similarity=0.272  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcCCeEEeecCCCHHHHHHhhhc---Cccc---ccce---EEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862          70 FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQ---NPDV---IKHV---AVSSGISAKDLAGLKEILAALPEIEYICLDVA  140 (671)
Q Consensus        70 ~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~---~p~~---~~~~---~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a  140 (671)
                      .++|.++.+.|+.++.-.  +++.. +.+++   .|..   .+.+   .+..+   ...++++++.++  ++++++++..
T Consensus        26 ~~~a~a~~~~G~~~~~~~--~~~~i-~~i~~~~~~Pil~~~~~d~~~~~~~~~---~~~~~v~~a~~a--Gad~I~~d~~   97 (221)
T PRK01130         26 AAMALAAVQGGAVGIRAN--GVEDI-KAIRAVVDVPIIGIIKRDYPDSEVYIT---PTLKEVDALAAA--GADIIALDAT   97 (221)
T ss_pred             HHHHHHHHHCCCeEEEcC--CHHHH-HHHHHhCCCCEEEEEecCCCCCCceEC---CCHHHHHHHHHc--CCCEEEEeCC
Confidence            579999999999887432  24432 22222   2321   0000   01111   123567777777  8889888866


Q ss_pred             CCC-C--hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---c
Q psy3862         141 NGY-T--QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---C  214 (671)
Q Consensus       141 ~G~-~--~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~  214 (671)
                      ... +  +...+.++..++. +...++ ..+.+.++++.+.++|+|+|.+.. +|+...+. ....+.+..+..+.   .
T Consensus        98 ~~~~p~~~~~~~~i~~~~~~-~~i~vi-~~v~t~ee~~~a~~~G~d~i~~~~-~g~t~~~~-~~~~~~~~~i~~i~~~~~  173 (221)
T PRK01130         98 LRPRPDGETLAELVKRIKEY-PGQLLM-ADCSTLEEGLAAQKLGFDFIGTTL-SGYTEETK-KPEEPDFALLKELLKAVG  173 (221)
T ss_pred             CCCCCCCCCHHHHHHHHHhC-CCCeEE-EeCCCHHHHHHHHHcCCCEEEcCC-ceeecCCC-CCCCcCHHHHHHHHHhCC
Confidence            432 2  4555666666553 444444 456788999999999999997642 22211000 01112233333332   3


Q ss_pred             cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         215 IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +|  ++|||.|.+.+..++++|||++-||
T Consensus       174 iPvia~GGI~t~~~~~~~l~~GadgV~iG  202 (221)
T PRK01130        174 CPVIAEGRINTPEQAKKALELGAHAVVVG  202 (221)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence            56  7999999999999999999999888

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=97.51  E-value=0.0002  Score=88.91  Aligned_cols=217  Identities=13%  Similarity=0.128  Sum_probs=126.0

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-c----HHHHHHHHHcCCeEEee-cCCC
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-T----FEMAKHLAKHGLFTTIH-KYYT   90 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~----~~lA~Ala~~gglgvIh-~n~~   90 (671)
                      ..++++|+++.|.+...+|.++|.--..|.          -++.+++|..++ +    ..||.++.+.|+.--.. .+++
T Consensus       829 ~~~~lr~ll~~~~~~~~~p~~eve~v~~I~----------~rf~~~aMSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~  898 (1485)
T PRK11750        829 PVATLRDLLALKPADNPIPLDEVEPAEELF----------KRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGED  898 (1485)
T ss_pred             CCCCHHHHhcccCCCCCCCccccccHHHHh----------cccccccCCCCccCHHHHHHHHHHHHHhCCceecCCCCCC
Confidence            345899999999876666766665444454          358899999875 2    45888888887653222 2477


Q ss_pred             HHHHHHh----hhc--------Ccccccc---eE--Ee----cC----CChhh-HHHHHHHHHhCCCceEEEeeccCCC-
Q psy3862          91 LEEWKAF----AVQ--------NPDVIKH---VA--VS----SG----ISAKD-LAGLKEILAALPEIEYICLDVANGY-  143 (671)
Q Consensus        91 ~Eeq~~~----i~~--------~p~~~~~---~~--v~----~G----~~~~d-~~rl~~l~~a~~~~d~Ivld~a~G~-  143 (671)
                      +|+....    ++.        .|+.+..   +.  ++    +|    ++... .+.+.++....|+++.+.-...|.. 
T Consensus       899 p~~~~~~~~~~i~QiaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiy  978 (1485)
T PRK11750        899 PARYGTEKVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIY  978 (1485)
T ss_pred             HHHHhcccCCeEEEccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCC
Confidence            7764211    110        1111111   11  11    11    11111 1344455555667777665544443 


Q ss_pred             -ChHHHHHHHHHHHhC---CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc-eEEEE--eccc-CCc---chhh-hh
Q psy3862         144 -TQTFVDFVRRIREMY---PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS-VCTTR--LKNK-TSD---FFLI-QF  211 (671)
Q Consensus       144 -~~~~~~~ik~lr~~~---P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~-~~~t~--v~~~-~~~---~~~i-~~  211 (671)
                       .+++.++|.++|+..   |...++++...-..-+.-+.+||+|+|.|||.+|. .....  ++.- .|-   +... +.
T Consensus       979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~ 1058 (1485)
T PRK11750        979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQA 1058 (1485)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHH
Confidence             377888899998765   55566665432233444567899999999996664 32222  1111 121   1000 11


Q ss_pred             cc------c--cCCccccccHHHHHHHHHcCCCEEEEccc
Q psy3862         212 YS------C--IPQAGNVVTGEMVEELILSGADVIKVGIG  243 (671)
Q Consensus       212 i~------~--~p~aGnV~t~~~a~~li~aGAdgvkVG~~  243 (671)
                      +.      .  +-+.|++.|+.-+.-++.+|||.+-+|-+
T Consensus      1059 L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750       1059 LVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred             HHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchH
Confidence            11      1  12799999999999999999999877644

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=97.50  E-value=0.0002  Score=77.86  Aligned_cols=144  Identities=24%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             ceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCH----HHHHHHHhcC---ccc----------c---------
Q psy3862         328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL----EEWKAFAVQN---PDV----------I---------  381 (671)
Q Consensus       328 ~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~----e~~~~~v~~~---~~~----------~---------  381 (671)
                      ...+..|||-++|..|+++++|.+-++.||+|+|-.++-.    ++|+..+++.   |..          +         
T Consensus        10 ~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~   89 (336)
T COG2070          10 LLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARR   89 (336)
T ss_pred             ccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccc
Confidence            3456789999999999999999999999999988865543    3444444432   310          0         


Q ss_pred             ----------------cceee---------------------ecccChhhHHHHHHcCCcEEEEccc-cccccc----cc
Q psy3862         382 ----------------KHVAD---------------------GGCTSPGDVAKAMGAGADFVMLGGM-FAGHDQ----SG  419 (671)
Q Consensus       382 ----------------~~v~~---------------------~~~~~~~~~~~l~~aG~d~i~id~~-a~gh~~----~~  419 (671)
                                      +.+.-                     ...++.....+..++|+|.++.+|. +-||.-    ..
T Consensus        90 ~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~  169 (336)
T COG2070          90 NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEV  169 (336)
T ss_pred             cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCc
Confidence                            00000                     1111233344446789999999987 568843    22


Q ss_pred             --cccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCC
Q psy3862         420 --GELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG  479 (671)
Q Consensus       420 --~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt  479 (671)
                        ..++.++...|.       ++ .+|.+|-+.+++... ++..|||+|.+|..+-.+.+|.+
T Consensus       170 ~t~~Lv~ev~~~~~-------~i-PViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a  224 (336)
T COG2070         170 STFALVPEVVDAVD-------GI-PVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADA  224 (336)
T ss_pred             cHHHHHHHHHHHhc-------CC-CEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCC
Confidence              334333332211       12 344444467776655 78999999999976666566655

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=97.48  E-value=0.00038  Score=74.96  Aligned_cols=45  Identities=27%  Similarity=0.266  Sum_probs=38.4

Q ss_pred             CcceEecCCCCCCC-HHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862         332 GVPIIAANMDTVGT-FEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ  376 (671)
Q Consensus       332 ~iPiIaa~MDtV~~-~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~  376 (671)
                      ..|||.++|-++.+ +++|.+.++.||||+|. -++++|+..+++++
T Consensus         2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~   48 (320)
T cd04743           2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEE   48 (320)
T ss_pred             CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHH
Confidence            36999999999997 89999999999999999 56688886555543

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=97.47  E-value=0.00076  Score=69.62  Aligned_cols=161  Identities=17%  Similarity=0.200  Sum_probs=95.1

Q ss_pred             HHHHHHHHcCCeEEeecCCCHHHHHHhhh-cCcccccceEEecCC-ChhhHHHHHHHHHhCCCceEEEeecc--C-----
Q psy3862          71 EMAKHLAKHGLFTTIHKYYTLEEWKAFAV-QNPDVIKHVAVSSGI-SAKDLAGLKEILAALPEIEYICLDVA--N-----  141 (671)
Q Consensus        71 ~lA~Ala~~gglgvIh~n~~~Eeq~~~i~-~~p~~~~~~~v~~G~-~~~d~~rl~~l~~a~~~~d~Ivld~a--~-----  141 (671)
                      +-+..+.+.|.=-++.....+++|.+... +.. ...++.++++. +++++.++.+++..  ..+.+-++..  +     
T Consensus        33 ~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~--~~d~IdiN~gCP~~~v~~  109 (231)
T TIGR00736        33 KASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFVDLEEAYDVLLTIAE--HADIIEINAHCRQPEITE  109 (231)
T ss_pred             HHHHHHHHcCCcccCcCcccHHHHHHHHHHHHh-hcCCEEEEEecCCHHHHHHHHHHHhc--CCCEEEEECCCCcHHHcC
Confidence            34445566665545433223555543332 111 22356666664 77777777666665  5667666532  1     


Q ss_pred             -C-------CChHHHHHHHHHHHh-CCCceEEEEEe---ccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhh
Q psy3862         142 -G-------YTQTFVDFVRRIREM-YPKHVIIAGNV---VTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLI  209 (671)
Q Consensus       142 -G-------~~~~~~~~ik~lr~~-~P~~~li~g~v---~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i  209 (671)
                       |       +++.+.+.++.+++. .|...|+-.+.   .+.+.++.|.++|+|.|.||..-...       ...++..+
T Consensus       110 ~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-------~~a~~~~I  182 (231)
T TIGR00736       110 IGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-------PYADMDLL  182 (231)
T ss_pred             CCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-------chhhHHHH
Confidence             1       234455566666532 46666665433   35688999999999999997521110       00112222


Q ss_pred             hhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         210 QFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       210 ~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..++    .+|  .-|+|-|.+.++..+++|||+|.||
T Consensus       183 ~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg  220 (231)
T TIGR00736       183 KILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA  220 (231)
T ss_pred             HHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence            2221    145  5899999999999999999999998

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=97.39  E-value=0.0011  Score=72.03  Aligned_cols=189  Identities=17%  Similarity=0.178  Sum_probs=101.9

Q ss_pred             eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEe-ecCC------------------------------
Q psy3862          41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTI-HKYY------------------------------   89 (671)
Q Consensus        41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvI-h~n~------------------------------   89 (671)
                      |++++     .+++|+-||+.++- .....+....+... |+|.+ =+..                              
T Consensus        46 L~~~~-----~Gl~l~NPi~lAsG-~~~~~~~~~~~~~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n  118 (335)
T TIGR01036        46 LEVTV-----LGLKFPNPLGLAAG-FDKDGEAIDALGAM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN  118 (335)
T ss_pred             CcEEE-----CCEECCCCcEeCCc-cCCCHHHHHHHHhc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence            88888     48999999988655 33344455545555 44432 1111                              


Q ss_pred             -CHHHHHHhhhcCcccccceEEecCCC--------hhhHHHHHHHHHhCCCceEEEeecc--CC-------CChHHHHHH
Q psy3862          90 -TLEEWKAFAVQNPDVIKHVAVSSGIS--------AKDLAGLKEILAALPEIEYICLDVA--NG-------YTQTFVDFV  151 (671)
Q Consensus        90 -~~Eeq~~~i~~~p~~~~~~~v~~G~~--------~~d~~rl~~l~~a~~~~d~Ivld~a--~G-------~~~~~~~~i  151 (671)
                       .+|.+.+.+++.+ ...++.++++.+        .+|+.+..+.++.  .+|++.+|.+  |.       .++.+.+.+
T Consensus       119 ~G~~~~l~~i~~~~-~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~--~ad~iElNlScPn~~~~~~~~~~~~~~~i~  195 (335)
T TIGR01036       119 HGADVLVERLKRAR-YKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP--LADYLVVNVSSPNTPGLRDLQYKAELRDLL  195 (335)
T ss_pred             hhHHHHHHHHhhcc-CCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh--hCCEEEEEccCCCCCCcccccCHHHHHHHH
Confidence             1233333332211 112444554422        2344333333332  4678777643  21       123344444


Q ss_pred             HHHHHh---------CCCceEEEEEec---cHHHHHHHHHCCCcEEEECc---------------CCCceEEEEecccCC
Q psy3862         152 RRIREM---------YPKHVIIAGNVV---TGEMVEELILSGADVIKVGI---------------GPGSVCTTRLKNKTS  204 (671)
Q Consensus       152 k~lr~~---------~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdg---------------a~G~~~~t~v~~~~~  204 (671)
                      +.+++.         .|...|+..+..   ..+-++++.++|+|.|++--               ..|..+-..++..  
T Consensus       196 ~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~--  273 (335)
T TIGR01036       196 TAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDK--  273 (335)
T ss_pred             HHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHH--
Confidence            444321         577777877764   45778889999999998622               0110000000000  


Q ss_pred             cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+..+..+.     .+|  .+|||.|++.+..+|.+|||.|.||
T Consensus       274 al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~  317 (335)
T TIGR01036       274 STEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY  317 (335)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence            111222221     245  5999999999999999999999988

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=97.38  E-value=0.00074  Score=67.22  Aligned_cols=115  Identities=24%  Similarity=0.355  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCC-CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862         119 LAGLKEILAALPEIEYICLDVANG-YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT  197 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G-~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t  197 (671)
                      ++.+++++++  ++++|.+|.-.- -+..+.++++++|+.|   .++.+-+.|.|.+..+.++|+|+|----++ .  +.
T Consensus        54 ~~ev~~l~~a--GadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D~I~TTLsG-Y--T~  125 (192)
T PF04131_consen   54 LKEVDALAEA--GADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGFDIIGTTLSG-Y--TP  125 (192)
T ss_dssp             HHHHHHHHHC--T-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-SEEE-TTTT-S--ST
T ss_pred             HHHHHHHHHc--CCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCCEEEccccc-C--CC
Confidence            6788999998  889999985432 2466788888888888   667778899999999999999999322111 1  00


Q ss_pred             EecccCCcchhhhhcc--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKTSDFFLIQFYS--CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~~~~~~i~~i~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+...|++.++..+.  .+|  +=|++-|.++++.++++||.+|=||
T Consensus       126 ~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVG  173 (192)
T PF04131_consen  126 YTKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVG  173 (192)
T ss_dssp             TSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred             CCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence            1122346676666553  355  6899999999999999999999999

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=97.37  E-value=0.003  Score=67.17  Aligned_cols=188  Identities=21%  Similarity=0.250  Sum_probs=102.3

Q ss_pred             CCcccCceEEecC-CCccccHHHHHHHHHcCCeEEeec-CCC-----------------------------HHHHHHhhh
Q psy3862          51 GKTYQGVPIIAAN-MDTVGTFEMAKHLAKHGLFTTIHK-YYT-----------------------------LEEWKAFAV   99 (671)
Q Consensus        51 ~~~~l~~Piv~a~-M~~vt~~~lA~Ala~~gglgvIh~-n~~-----------------------------~Eeq~~~i~   99 (671)
                      .+++|+-||+.++ +.+ +...+.. +...||+|.+-. ..+                             ++++.+.++
T Consensus         5 ~G~~~~nP~~~aag~~~-~~~~~~~-~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~   82 (296)
T cd04740           5 AGLRLKNPVILASGTFG-FGEELSR-VADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL   82 (296)
T ss_pred             CCEEcCCCCEECCCCCC-CHHHHHH-HHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHH
Confidence            4788899998875 433 4344444 667776765321 111                             233333332


Q ss_pred             cC-cccccceEEec-CCChhhHHHHHHHHHhCCCceEEEeecc--C---------CCChHHHHHHHHHHHh--CCCceEE
Q psy3862         100 QN-PDVIKHVAVSS-GISAKDLAGLKEILAALPEIEYICLDVA--N---------GYTQTFVDFVRRIREM--YPKHVII  164 (671)
Q Consensus       100 ~~-p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a--~---------G~~~~~~~~ik~lr~~--~P~~~li  164 (671)
                      +. .....|+.+++ |..++++.++.+.++.. +.|.+-++..  +         +.++.+.+.++.+++.  .|...++
T Consensus        83 ~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~-G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl  161 (296)
T cd04740          83 PWLREFGTPVIASIAGSTVEEFVEVAEKLADA-GADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL  161 (296)
T ss_pred             HHhhcCCCcEEEEEecCCHHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence            11 11123455544 45566665554444432 5677766432  1         1234455666776654  5766666


Q ss_pred             EEEec-cHHHHHHHHHCCCcEEEECc-CCCc---eEE--E-------Eec-cc-CC-cchhhhhcc---ccC--Cccccc
Q psy3862         165 AGNVV-TGEMVEELILSGADVIKVGI-GPGS---VCT--T-------RLK-NK-TS-DFFLIQFYS---CIP--QAGNVV  222 (671)
Q Consensus       165 ~g~v~-t~e~a~~Li~AGaD~IvVdg-a~G~---~~~--t-------~v~-~~-~~-~~~~i~~i~---~~p--~aGnV~  222 (671)
                      ..+.. ..+.++.|.++|+|.|++-. ..|.   ..+  .       .++ +- .| .+..+..+.   .+|  ..|||.
T Consensus       162 ~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~  241 (296)
T cd04740         162 TPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA  241 (296)
T ss_pred             CCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC
Confidence            54432 34668889999999987632 1111   000  0       000 00 00 122222221   256  689999


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |++.+..++++|||+|.||
T Consensus       242 ~~~da~~~l~~GAd~V~ig  260 (296)
T cd04740         242 SGEDALEFLMAGASAVQVG  260 (296)
T ss_pred             CHHHHHHHHHcCCCEEEEc
Confidence            9999999999999999999

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.36  E-value=0.00091  Score=72.93  Aligned_cols=195  Identities=15%  Similarity=0.093  Sum_probs=105.4

Q ss_pred             CcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE-eecC---------------------------
Q psy3862          37 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKY---------------------------   88 (671)
Q Consensus        37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n---------------------------   88 (671)
                      .+.+|++++     .+++|+-||..++- .....+....+...| +|. .=+.                           
T Consensus        45 ~~~~L~~~~-----~Gl~l~nPi~~AsG-~~~~~~~~~~~~~~G-~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~  117 (344)
T PRK05286         45 TDPRLPVTV-----MGLTFPNPVGLAAG-FDKNGEAIDALGALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRM  117 (344)
T ss_pred             CCCCCceEE-----CCEECCCCCEECCC-CCCChHHHHHHHHcC-CCEEEeCCcCCCCCCCCCCCCEEecccccccccCC
Confidence            577789998     58999999988764 333445445455443 322 1111                           


Q ss_pred             ----CCHHHHHHhhhcCcccccceEEecCC--------ChhhHHHHHHHHHhCCCceEEEeeccCC---------CChHH
Q psy3862          89 ----YTLEEWKAFAVQNPDVIKHVAVSSGI--------SAKDLAGLKEILAALPEIEYICLDVANG---------YTQTF  147 (671)
Q Consensus        89 ----~~~Eeq~~~i~~~p~~~~~~~v~~G~--------~~~d~~rl~~l~~a~~~~d~Ivld~a~G---------~~~~~  147 (671)
                          ..+|.+.+.+++.. ..-|+.++++-        ..+|+.++.+.++.  .+|++.++..--         +...+
T Consensus       118 gl~n~g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~--~ad~lelN~scP~~~g~~~~~~~~~~  194 (344)
T PRK05286        118 GFNNDGADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP--YADYFTVNISSPNTPGLRDLQYGEAL  194 (344)
T ss_pred             CCCCHhHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh--hCCEEEEEccCCCCCCcccccCHHHH
Confidence                11233333332211 11245555442        22344333333332  467777764311         12344


Q ss_pred             HHHHHHHHH--h-----CCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCCCceE-EEE--eccc---C--C-----
Q psy3862         148 VDFVRRIRE--M-----YPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGSVC-TTR--LKNK---T--S-----  204 (671)
Q Consensus       148 ~~~ik~lr~--~-----~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~G~~~-~t~--v~~~---~--~-----  204 (671)
                      .+.++.+++  .     .|...++..+..   ..+.++.|.++|||.|++-..--... +..  ....   +  +     
T Consensus       195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~  274 (344)
T PRK05286        195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER  274 (344)
T ss_pred             HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence            455555543  2     677777765543   35778889999999998854210000 000  0000   0  0     


Q ss_pred             cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         205 DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       205 ~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+..+..+.     .+|  ..|||-|++.+..++.+|||+|.||
T Consensus       275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~  318 (344)
T PRK05286        275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY  318 (344)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence            111222221     245  6999999999999999999999888

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=97.30  E-value=0.0035  Score=67.59  Aligned_cols=183  Identities=15%  Similarity=0.140  Sum_probs=104.2

Q ss_pred             CcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC-CCHHHH-------HHhhhcCcccccceEEe-cCCChhhHHHH
Q psy3862          52 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY-YTLEEW-------KAFAVQNPDVIKHVAVS-SGISAKDLAGL  122 (671)
Q Consensus        52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n-~~~Eeq-------~~~i~~~p~~~~~~~v~-~G~~~~d~~rl  122 (671)
                      ++.++.|++.+||.++|+..+...+.+.| .+....- .+.+..       .......+ ...|+.+. .|.+++++.++
T Consensus         3 ~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~-~~~p~i~ql~g~~~~~~~~a   80 (319)
T TIGR00737         3 NIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAE-DETPISVQLFGSDPDTMAEA   80 (319)
T ss_pred             CccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCC-ccceEEEEEeCCCHHHHHHH
Confidence            45678899999999999988888766666 4544321 111111       11111111 12344443 34666777655


Q ss_pred             HHHHHhCCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEE-EEe----ccHHHHHHHHHC
Q psy3862         123 KEILAALPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIA-GNV----VTGEMVEELILS  180 (671)
Q Consensus       123 ~~l~~a~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~-g~v----~t~e~a~~Li~A  180 (671)
                      .+.+.. .+.|.|-++..-          |     .++-..+.++.+++.  +|...++- |..    .+.+.++.|.++
T Consensus        81 a~~~~~-~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~  159 (319)
T TIGR00737        81 AKINEE-LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA  159 (319)
T ss_pred             HHHHHh-CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence            544432 156666554321          1     123344556666554  56555553 211    235778889999


Q ss_pred             CCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHH-HcCCCEEEEc
Q psy3862         181 GADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELI-LSGADVIKVG  241 (671)
Q Consensus       181 GaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li-~aGAdgvkVG  241 (671)
                      |+|.|.+.+   ........ ...++..+..++   .+|  ..|+|.|.+.+..++ ..|||+|.+|
T Consensus       160 G~d~i~vh~---r~~~~~~~-~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig  222 (319)
T TIGR00737       160 GAQAVTLHG---RTRAQGYS-GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG  222 (319)
T ss_pred             CCCEEEEEc---ccccccCC-CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence            999998843   11000000 001233333332   245  699999999999999 6899999998

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.29  E-value=0.017  Score=58.97  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=70.0

Q ss_pred             HHHHHHHhCCCceEE--EeeccCCCChHHHHHHHHHHHhCC---CceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862         121 GLKEILAALPEIEYI--CLDVANGYTQTFVDFVRRIREMYP---KHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC  195 (671)
Q Consensus       121 rl~~l~~a~~~~d~I--vld~a~G~~~~~~~~ik~lr~~~P---~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~  195 (671)
                      .++.+++.  +...+  +++     .....+.++.+++.||   ...+=+|.|.|.++++.++++|+++|+   +++.. 
T Consensus        30 ~~~al~~~--Gi~~iEit~~-----~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv---sP~~~-   98 (213)
T PRK06552         30 ISLAVIKG--GIKAIEVTYT-----NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV---SPSFN-   98 (213)
T ss_pred             HHHHHHHC--CCCEEEEECC-----CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE---CCCCC-
Confidence            34555655  44443  333     3557788888888884   445556688999999999999999996   34421 


Q ss_pred             EEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         196 TTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       196 ~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                                -.+++...  .+|..=|+.|...+..++++|||-||+
T Consensus        99 ----------~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vkl  135 (213)
T PRK06552         99 ----------RETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKL  135 (213)
T ss_pred             ----------HHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEE
Confidence                      12333332  355566899999999999999999997

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.29  E-value=0.0069  Score=65.74  Aligned_cols=134  Identities=21%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             ceEEec-CCChhhHHHHHHHHHhCCCceEEEeeccC--CC-------C-hHHHHHHHHHHHh--CCCceEEEEEe-ccHH
Q psy3862         107 HVAVSS-GISAKDLAGLKEILAALPEIEYICLDVAN--GY-------T-QTFVDFVRRIREM--YPKHVIIAGNV-VTGE  172 (671)
Q Consensus       107 ~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a~--G~-------~-~~~~~~ik~lr~~--~P~~~li~g~v-~t~e  172 (671)
                      |+.+++ +.+.+++.++...++.. +++++.++...  ..       . ..+.+.++.+++.  .|...++..+. ...+
T Consensus       103 pvi~sI~g~~~~e~~~~a~~~~~a-gad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~  181 (334)
T PRK07565        103 PVIASLNGSSAGGWVDYARQIEQA-GADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLAN  181 (334)
T ss_pred             cEEEEeccCCHHHHHHHHHHHHHc-CCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHH
Confidence            444444 34455554443333332 67888776532  11       1 2355667777654  47666776654 3467


Q ss_pred             HHHHHHHCCCcEEEECcCC-C-ceEEEEe----cccCC-------cchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862         173 MVEELILSGADVIKVGIGP-G-SVCTTRL----KNKTS-------DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG  234 (671)
Q Consensus       173 ~a~~Li~AGaD~IvVdga~-G-~~~~t~v----~~~~~-------~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG  234 (671)
                      .++.|.++|+|.|++-... + .......    ...++       .+..+..+.   .+|  ..|||-|++.+...|.+|
T Consensus       182 ~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aG  261 (334)
T PRK07565        182 MAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAG  261 (334)
T ss_pred             HHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcC
Confidence            8888999999999873211 0 0000000    00000       011111111   256  699999999999999999


Q ss_pred             CCEEEEc
Q psy3862         235 ADVIKVG  241 (671)
Q Consensus       235 AdgvkVG  241 (671)
                      ||+|.||
T Consensus       262 A~~V~v~  268 (334)
T PRK07565        262 ADVVMIA  268 (334)
T ss_pred             CCceeee
Confidence            9999998

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.20  E-value=0.0027  Score=67.85  Aligned_cols=128  Identities=18%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             CC-ChhhHHHHHHHHHhCCCceEEEeecc--CC------------CChHHHHHHHHHHHh--CCCceEEEEEe-ccHHHH
Q psy3862         113 GI-SAKDLAGLKEILAALPEIEYICLDVA--NG------------YTQTFVDFVRRIREM--YPKHVIIAGNV-VTGEMV  174 (671)
Q Consensus       113 G~-~~~d~~rl~~l~~a~~~~d~Ivld~a--~G------------~~~~~~~~ik~lr~~--~P~~~li~g~v-~t~e~a  174 (671)
                      |- +++++.++.+.++. .+++++-+|..  +.            .++.+.+.++.+++.  .|...|+..+. ...+.+
T Consensus       108 G~~~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a  186 (299)
T cd02940         108 CEYNKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIA  186 (299)
T ss_pred             CCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHH
Confidence            54 66777665555543 25677766543  11            124455666666653  47666766443 345788


Q ss_pred             HHHHHCCCcEEEE----------Cc--------CCCceEEEEec--ccCC-cchhhhhcc-----ccC--CccccccHHH
Q psy3862         175 EELILSGADVIKV----------GI--------GPGSVCTTRLK--NKTS-DFFLIQFYS-----CIP--QAGNVVTGEM  226 (671)
Q Consensus       175 ~~Li~AGaD~IvV----------dg--------a~G~~~~t~v~--~~~~-~~~~i~~i~-----~~p--~aGnV~t~~~  226 (671)
                      +.+.++|||.|++          |.        -||......++  ..+| .+..+..+.     .+|  ..|||-+++.
T Consensus       187 ~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~d  266 (299)
T cd02940         187 RAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWED  266 (299)
T ss_pred             HHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHH
Confidence            8999999999973          10        01100000000  0000 112222221     245  6999999999


Q ss_pred             HHHHHHcCCCEEEEc
Q psy3862         227 VEELILSGADVIKVG  241 (671)
Q Consensus       227 a~~li~aGAdgvkVG  241 (671)
                      +...+.+|||+|.||
T Consensus       267 a~~~l~aGA~~V~i~  281 (299)
T cd02940         267 AAEFLLLGASVVQVC  281 (299)
T ss_pred             HHHHHHcCCChheEc
Confidence            999999999999998

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=97.18  E-value=0.0023  Score=71.03  Aligned_cols=77  Identities=17%  Similarity=0.015  Sum_probs=50.9

Q ss_pred             CCCceeeeecCCCc---cCCCCcccceeeeeeccCCceeeCcceEecCCCCCCC-----HHHHHHHHHcCCeEEEc-cCC
Q psy3862         295 LDFKDVMLRPKRST---LKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT-----FEMAKHLAKHGLFTTIH-KYY  365 (671)
Q Consensus       295 l~fdDVll~P~rst---~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~-----~~mA~~la~~Gglgvih-r~~  365 (671)
                      .+.+|+++.|....   ..+..+++.+..+..+-.+.+.+..||+-|+|-....     .++|.+.++.|+++.+. -.+
T Consensus        37 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Gegg~  116 (392)
T cd02808          37 GTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGE  116 (392)
T ss_pred             CChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCCCC
Confidence            36677777665322   2233344433333333445677889999999975543     68999999999999998 455


Q ss_pred             CHHHHH
Q psy3862         366 TLEEWK  371 (671)
Q Consensus       366 ~~e~~~  371 (671)
                      ++|+..
T Consensus       117 ~~~~~~  122 (392)
T cd02808         117 LPEERE  122 (392)
T ss_pred             CHHHHh
Confidence            666554

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>KOG0538|consensus

Probab=97.18  E-value=0.01  Score=62.81  Aligned_cols=205  Identities=20%  Similarity=0.258  Sum_probs=115.4

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCc-----c-ccHHHHHHHHHcCCeEEeec--CC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT-----V-GTFEMAKHLAKHGLFTTIHK--YY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~-----v-t~~~lA~Ala~~gglgvIh~--n~   89 (671)
                      -..|..++|.|+.+-..  +.+|++|++     -+.++..||.++|...     . ++...|.|.+++|-.-++-.  .+
T Consensus        37 ~~AF~ri~~rPr~L~dV--s~iD~sTtv-----lG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~  109 (363)
T KOG0538|consen   37 INAFRRILFRPRILRDV--SKIDTSTTV-----LGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATC  109 (363)
T ss_pred             HHHHHhhhccchhheec--cccccccee-----ccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcC
Confidence            35688999999998764  699999999     4888999999996543     2 34557777777766555543  48


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhH-HHHHHHHHhCCCceE--EEeecc--------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL-AGLKEILAALPEIEY--ICLDVA--------------------------  140 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~-~rl~~l~~a~~~~d~--Ivld~a--------------------------  140 (671)
                      |+|+..+.-   |..+.=+++-+- +.+++ +.+..-.+. .+..+  +++|..                          
T Consensus       110 S~EdI~~aa---p~~~rwfQLYvy-kdr~It~~Lv~raEk-~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~  184 (363)
T KOG0538|consen  110 SVEDIASAA---PPGIRWFQLYVY-KDRDITEQLVKRAEK-AGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEG  184 (363)
T ss_pred             CHHHHHhhC---CCCcEEEEEEec-CchHHHHHHHHHHHH-cCceEEEEEeccccccCchhhhhhcccCCcccccccccc
Confidence            888754332   221111111000 00000 000000000 01111  111100                          


Q ss_pred             -----------CCC----------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         141 -----------NGY----------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       141 -----------~G~----------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                                 .|.          +-.|. -+++++.. -..+++.-.|-+.|+|+.++++|++-|++.--+|.-.    
T Consensus       185 ~~~~~v~~~~~sg~~~~~~~~id~Sl~W~-Di~wLr~~-T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQl----  258 (363)
T KOG0538|consen  185 LKLTEVEEAGDSGLAAYVSSQIDPSLSWK-DIKWLRSI-TKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQL----  258 (363)
T ss_pred             cccccCCcccchhhhhhhhcCCCCCCChh-hhHHHHhc-CcCCeEEEeecccHHHHHHHHhCCceEEEeCCCcccc----
Confidence                       000          01111 23444432 2344666677899999999999999998844333210    


Q ss_pred             cccCC-cchhhhhc----c-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         200 KNKTS-DFFLIQFY----S-CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       200 ~~~~~-~~~~i~~i----~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       +..| ++..++.+    . .+|  .-|||-++..+.-++++||-+|-||
T Consensus       259 -D~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiG  307 (363)
T KOG0538|consen  259 -DYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIG  307 (363)
T ss_pred             -CcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEec
Confidence             0011 22222222    1 255  6999999999999999999999887

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=97.13  E-value=0.0053  Score=65.58  Aligned_cols=189  Identities=18%  Similarity=0.152  Sum_probs=103.1

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEEe-ecC-----------------------------CCHHHHHHhhhc
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTI-HKY-----------------------------YTLEEWKAFAVQ  100 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvI-h~n-----------------------------~~~Eeq~~~i~~  100 (671)
                      .+++|+-||+.++-.+....+....+... |+|.+ =+.                             ..+|.+.+.+++
T Consensus         4 ~Gl~l~nPi~~Asg~~~~~~e~~~~~~~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~   82 (294)
T cd04741           4 PGLTISPPLMNAAGPWCTTLEDLLELAAS-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRT   82 (294)
T ss_pred             CCeeCCCCCEECCCCCCCCHHHHHHHHHc-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHH
Confidence            37888999999987765555555545553 45432 111                             223444444432


Q ss_pred             C----cccccceEEecCCChhhHHHHHHHHHhC--CCceEEEeecc--CC--------CChHHHHHHHHHHHh--CCCce
Q psy3862         101 N----PDVIKHVAVSSGISAKDLAGLKEILAAL--PEIEYICLDVA--NG--------YTQTFVDFVRRIREM--YPKHV  162 (671)
Q Consensus       101 ~----p~~~~~~~v~~G~~~~d~~rl~~l~~a~--~~~d~Ivld~a--~G--------~~~~~~~~ik~lr~~--~P~~~  162 (671)
                      .    +....|+.+++.-.++|+.+..+.+...  +++|++-+|..  |.        .++.+.+.++.+++.  .|...
T Consensus        83 ~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~v  162 (294)
T cd04741          83 ISDGLPGSAKPFFISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGV  162 (294)
T ss_pred             HhhhccccCCeEEEECCCCHHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            1    1122455555443366664433333321  25678777654  21        235566667776654  47666


Q ss_pred             EEEEEec---cHHHHHHHHHC--CCcEEEE----------CcCCCceEEEEecccC---------C-cchhhhhc----c
Q psy3862         163 IIAGNVV---TGEMVEELILS--GADVIKV----------GIGPGSVCTTRLKNKT---------S-DFFLIQFY----S  213 (671)
Q Consensus       163 li~g~v~---t~e~a~~Li~A--GaD~IvV----------dga~G~~~~t~v~~~~---------~-~~~~i~~i----~  213 (671)
                      |+.-+..   ..+.++.|.++  |+|.|++          |...+..... -...+         + .+..+..+    .
T Consensus       163 Kl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~-~~~~~gG~SG~~i~~~al~~v~~~~~~~~  241 (294)
T cd04741         163 KTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLK-PKTGFGGLAGAYLHPLALGNVRTFRRLLP  241 (294)
T ss_pred             EeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccC-CCCCCCCcCchhhHHHHHHHHHHHHHhcC
Confidence            7765432   24566777778  9998884          3211100000 00000         0 01111111    1


Q ss_pred             -ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 -CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 -~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .+|  ..|||.|++.+...+.+|||+|.||
T Consensus       242 ~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~  272 (294)
T cd04741         242 SEIQIIGVGGVLDGRGAFRMRLAGASAVQVG  272 (294)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence             256  6999999999999999999999998

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.06  E-value=0.0051  Score=68.76  Aligned_cols=124  Identities=18%  Similarity=0.273  Sum_probs=73.0

Q ss_pred             ChhhHHHHHHHHHhCCCceEEEeeccC--------------CCChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHH
Q psy3862         115 SAKDLAGLKEILAALPEIEYICLDVAN--------------GYTQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEEL  177 (671)
Q Consensus       115 ~~~d~~rl~~l~~a~~~~d~Ivld~a~--------------G~~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~L  177 (671)
                      +++++..+...++. .+++++-+|..-              .+++.+.+.++.+++.  .|...|+..+.. ..+.++.|
T Consensus       111 ~~~~~~~~a~~~~~-~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~  189 (420)
T PRK08318        111 NEEEWKEIAPLVEE-TGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAA  189 (420)
T ss_pred             CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHH
Confidence            45666555445443 257787776431              0124455566666553  477777776543 35788889


Q ss_pred             HHCCCcEEEE----------CcC--------CCc-----eEEEEecccCCcchhhhhc-c-----ccC--CccccccHHH
Q psy3862         178 ILSGADVIKV----------GIG--------PGS-----VCTTRLKNKTSDFFLIQFY-S-----CIP--QAGNVVTGEM  226 (671)
Q Consensus       178 i~AGaD~IvV----------dga--------~G~-----~~~t~v~~~~~~~~~i~~i-~-----~~p--~aGnV~t~~~  226 (671)
                      .++|||.|++          |.-        ||.     ..-+.+++.  ++..+..+ .     .+|  ..|||.|++.
T Consensus       190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~--~l~~v~~~~~~~~~~~ipIig~GGI~s~~d  267 (420)
T PRK08318        190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPI--ALNMVAEIARDPETRGLPISGIGGIETWRD  267 (420)
T ss_pred             HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHH--HHHHHHHHHhccccCCCCEEeecCcCCHHH
Confidence            9999999982          210        110     000001000  11111111 1     245  5999999999


Q ss_pred             HHHHHHcCCCEEEEc
Q psy3862         227 VEELILSGADVIKVG  241 (671)
Q Consensus       227 a~~li~aGAdgvkVG  241 (671)
                      +.+.|.+|||+|+||
T Consensus       268 a~e~i~aGA~~Vqi~  282 (420)
T PRK08318        268 AAEFILLGAGTVQVC  282 (420)
T ss_pred             HHHHHHhCCChheee
Confidence            999999999999999

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=97.06  E-value=0.0042  Score=66.83  Aligned_cols=194  Identities=14%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             eeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--ee-------c---------------------CC
Q psy3862          40 DITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--IH-------K---------------------YY   89 (671)
Q Consensus        40 dlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--Ih-------~---------------------n~   89 (671)
                      ||++++     .+++|+-||+.++-......+....+...| +|.  +.       .                     |.
T Consensus         1 dL~~~~-----~Gl~l~NPv~~AsG~~~~~~e~~~~~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~   74 (310)
T PRK02506          1 STSTQI-----AGFKFDNCLMNAAGVYCMTKEELEEVEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL   74 (310)
T ss_pred             CCceEE-----CCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence            577888     489999999998776654444444455544 432  11       1                     12


Q ss_pred             CHHHHHHhhhcCccc--ccceEEe-cCCChhhHHHHHHHHHhCCCceEEEeecc--C--C------CChHHHHHHHHHHH
Q psy3862          90 TLEEWKAFAVQNPDV--IKHVAVS-SGISAKDLAGLKEILAALPEIEYICLDVA--N--G------YTQTFVDFVRRIRE  156 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~--~~~~~v~-~G~~~~d~~rl~~l~~a~~~~d~Ivld~a--~--G------~~~~~~~~ik~lr~  156 (671)
                      .+|.+.+.+++....  ..|+.++ .|.+++++.++.+.++..+.+|++-++.+  |  +      .++.+.+.++.+++
T Consensus        75 g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~  154 (310)
T PRK02506         75 GFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFT  154 (310)
T ss_pred             CHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHH
Confidence            234444443221111  1344333 46777777665555554333788877665  2  1      12445566666665


Q ss_pred             h--CCCceEEEEEeccHHHHHHHH---HCCCcEEE----------ECcCCCceEE-----------EEecccCCcchhhh
Q psy3862         157 M--YPKHVIIAGNVVTGEMVEELI---LSGADVIK----------VGIGPGSVCT-----------TRLKNKTSDFFLIQ  210 (671)
Q Consensus       157 ~--~P~~~li~g~v~t~e~a~~Li---~AGaD~Iv----------Vdga~G~~~~-----------t~v~~~~~~~~~i~  210 (671)
                      .  .|...|+..+....+-++.+.   +.|+|.|.          +|.-++....           ..+++.  .+..+-
T Consensus       155 ~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~--al~~v~  232 (310)
T PRK02506        155 YFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPT--ALANVR  232 (310)
T ss_pred             hcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHH--HHHHHH
Confidence            3  477677777664444444433   44666532          2321111000           001100  011111


Q ss_pred             hc-c----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         211 FY-S----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       211 ~i-~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+ +    .+|  ..|||.|++.+...|.+||+.|+|+
T Consensus       233 ~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~  270 (310)
T PRK02506        233 AFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVG  270 (310)
T ss_pred             HHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhh
Confidence            11 1    245  6999999999999999999999988

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=97.04  E-value=0.023  Score=63.01  Aligned_cols=199  Identities=17%  Similarity=0.132  Sum_probs=115.5

Q ss_pred             CCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeE-EeecCC-------------------------
Q psy3862          36 RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFT-TIHKYY-------------------------   89 (671)
Q Consensus        36 ~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglg-vIh~n~-------------------------   89 (671)
                      .+-.||++++     .+++|+-|++.++-......++...+..+ |.| ++=+..                         
T Consensus         6 ~~~~dLst~~-----~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~   79 (385)
T PLN02495          6 ASEPDLSVTV-----NGLKMPNPFVIGSGPPGTNYTVMKRAFDE-GWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA   79 (385)
T ss_pred             cCCCcceEEE-----CCEEcCCCcEeCCccCCCCHHHHHHHHhc-CCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence            3678899999     48999999999977776555553333333 332 221111                         


Q ss_pred             ----------------CHHHHHHhhhcCcc-c-ccceEEec-C-CChhhHHHHHHHHHhCCCceEEEeecc--CCC----
Q psy3862          90 ----------------TLEEWKAFAVQNPD-V-IKHVAVSS-G-ISAKDLAGLKEILAALPEIEYICLDVA--NGY----  143 (671)
Q Consensus        90 ----------------~~Eeq~~~i~~~p~-~-~~~~~v~~-G-~~~~d~~rl~~l~~a~~~~d~Ivld~a--~G~----  143 (671)
                                      ++|.+.+++.+... . ..|+-+++ + .+++++.++.+.++. .++|++-++.+  |+.    
T Consensus        80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~~r~  158 (385)
T PLN02495         80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEE-TGVDALEINFSCPHGMPERK  158 (385)
T ss_pred             ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCcCc
Confidence                            24444444322111 1 12455555 3 677888776666664 36788887764  321    


Q ss_pred             --------ChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHHHHCCCcEEEECc--CCCceE--EE-E--e----cc
Q psy3862         144 --------TQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEELILSGADVIKVGI--GPGSVC--TT-R--L----KN  201 (671)
Q Consensus       144 --------~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~Li~AGaD~IvVdg--a~G~~~--~t-~--v----~~  201 (671)
                              ++.+.+.++.+++.  .|...|+..++. ..+-++++.++|||.|++=-  .++-..  .+ +  .    ..
T Consensus       159 ~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~  238 (385)
T PLN02495        159 MGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYS  238 (385)
T ss_pred             cchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCC
Confidence                    12233334555542  587788887764 35778889999999997632  111100  00 0  0    00


Q ss_pred             cC-----C---cchh------hhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         202 KT-----S---DFFL------IQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       202 ~~-----~---~~~~------i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..     +   ++.+      .+.+.     .+|  ..|||.|++.+...|.|||+.|+|+
T Consensus       239 ~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~  299 (385)
T PLN02495        239 TPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVC  299 (385)
T ss_pred             CCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEe
Confidence            00     1   1111      11111     145  5999999999999999999999998

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=97.01  E-value=0.0076  Score=61.32  Aligned_cols=117  Identities=26%  Similarity=0.411  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCC-C--hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGY-T--QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~-~--~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~  195 (671)
                      .+.++.+.++  +++++.++..... +  ....+.++.+++.+ ...+++ .+.|.+.+..+.++|+|++.+.. +|...
T Consensus        82 ~~~~~~a~~a--Gad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~-~g~t~  156 (219)
T cd04729          82 IEEVDALAAA--GADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGTTL-SGYTE  156 (219)
T ss_pred             HHHHHHHHHc--CCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEccC-ccccc
Confidence            4567777777  7888888754321 2  24556666666555 333333 56788899999999999996532 22110


Q ss_pred             EEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 TTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 ~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .. .....+.+..+..+.   .+|  ++|||.|.+.+..++++||||+-||
T Consensus       157 ~~-~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vG  206 (219)
T cd04729         157 ET-AKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVG  206 (219)
T ss_pred             cc-cCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence            00 001112333333332   356  7999999999999999999999998

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=96.86  E-value=0.0031  Score=71.01  Aligned_cols=189  Identities=14%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             CCcccCceEEecCCCccc-c----HHHHHHHHHcCCeEEee-cCCCHHHHH---HhhhcCcccccceEE-----------
Q psy3862          51 GKTYQGVPIIAANMDTVG-T----FEMAKHLAKHGLFTTIH-KYYTLEEWK---AFAVQNPDVIKHVAV-----------  110 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt-~----~~lA~Ala~~gglgvIh-~n~~~Eeq~---~~i~~~p~~~~~~~v-----------  110 (671)
                      ....+..|+.+++|.+.+ +    ..+|+++.+.|+.-=.. .++++++..   ..|++.  ....|++           
T Consensus       161 p~~~i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~~~~s~I~Qv--aSGRFGV~~~yL~~a~~i  238 (485)
T COG0069         161 PVLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYEDGRSAIKQV--ASGRFGVTPEYLANADAI  238 (485)
T ss_pred             ccceeeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhccccceEEEe--ccccCccCHHHhCccceE
Confidence            357888999999999874 2    45888888887542111 236665531   011100  0111111           


Q ss_pred             ----ecCCCh--------hh-HHHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCC---CceEEEEEeccHH
Q psy3862         111 ----SSGISA--------KD-LAGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYP---KHVIIAGNVVTGE  172 (671)
Q Consensus       111 ----~~G~~~--------~d-~~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P---~~~li~g~v~t~e  172 (671)
                          +-|-.|        .. .+.+.++....|+++.|.-..-|..  .+++..+|++||+..|   ...++++......
T Consensus       239 eIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~  318 (485)
T COG0069         239 EIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGT  318 (485)
T ss_pred             EEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHH
Confidence                111111        00 1223233333456655543333322  4778888999987643   3445555333222


Q ss_pred             HHHHHHHCCCcEEEECcCCCc-eEEEE--eccc-CCcchhhhhcc---------c---cCCccccccHHHHHHHHHcCCC
Q psy3862         173 MVEELILSGADVIKVGIGPGS-VCTTR--LKNK-TSDFFLIQFYS---------C---IPQAGNVVTGEMVEELILSGAD  236 (671)
Q Consensus       173 ~a~~Li~AGaD~IvVdga~G~-~~~t~--v~~~-~~~~~~i~~i~---------~---~p~aGnV~t~~~a~~li~aGAd  236 (671)
                      -+.-..+|+||+|+|||.+|. ..+..  ++.- .|-..-+....         +   +-++|++.|+..+.-++.+|||
T Consensus       319 iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd  398 (485)
T COG0069         319 IAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGAD  398 (485)
T ss_pred             HHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcc
Confidence            222277899999999996654 33322  1111 12111111110         0   1279999999999999999999


Q ss_pred             EEEEc
Q psy3862         237 VIKVG  241 (671)
Q Consensus       237 gvkVG  241 (671)
                      .+.+|
T Consensus       399 ~v~~g  403 (485)
T COG0069         399 AVGFG  403 (485)
T ss_pred             hhhhc
Confidence            99887

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.75  E-value=0.0057  Score=62.12  Aligned_cols=69  Identities=28%  Similarity=0.298  Sum_probs=42.3

Q ss_pred             ccChhhHHHHHHcCCcEEEEccccccccccccccccccccccc-cccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862         389 CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFP-LVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       389 ~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      ..+++++....++|+|++.+-   ... ....+.++.++..+| .+       +-+-+|| +...++...+.+|||+|-+
T Consensus       111 ~~t~~E~~~A~~~Gad~vk~F---pa~-~~G~~~l~~l~~~~~~~i-------pvvaiGG-I~~~n~~~~~~aGa~~vav  178 (206)
T PRK09140        111 VATPTEAFAALRAGAQALKLF---PAS-QLGPAGIKALRAVLPPDV-------PVFAVGG-VTPENLAPYLAAGAAGFGL  178 (206)
T ss_pred             cCCHHHHHHHHHcCCCEEEEC---CCC-CCCHHHHHHHHhhcCCCC-------eEEEECC-CCHHHHHHHHHCCCeEEEE
Confidence            334667777788999999973   111 111233333333332 11       1134787 4778888899999999988


Q ss_pred             Cc
Q psy3862         468 GG  469 (671)
Q Consensus       468 G~  469 (671)
                      |.
T Consensus       179 ~s  180 (206)
T PRK09140        179 GS  180 (206)
T ss_pred             eh
Confidence            74

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.74  E-value=0.011  Score=62.51  Aligned_cols=116  Identities=20%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC---  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~---  195 (671)
                      +..++.|.+.  ++|+|  | ....+.+.-+.++.+|+.| ....+|+. .|.+.+.+.++.|+|.|.--+.+|+.-   
T Consensus        79 ~~Ea~~L~~~--GvDiI--D-eTe~lrPade~~~~~K~~f-~vpfmad~-~~l~EAlrai~~GadmI~Tt~e~gTg~v~~  151 (287)
T TIGR00343        79 FVEAQILEAL--GVDYI--D-ESEVLTPADWTFHIDKKKF-KVPFVCGA-RDLGEALRRINEGAAMIRTKGEAGTGNIVE  151 (287)
T ss_pred             HHHHHHHHHc--CCCEE--E-ccCCCCcHHHHHHHHHHHc-CCCEEccC-CCHHHHHHHHHCCCCEEeccccCCCccHHH
Confidence            5566777776  77877  5 3344555666777777778 55566654 677888888999999998888777641   


Q ss_pred             -------EE----Ee-------------cccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 -------TT----RL-------------KNKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 -------~t----~v-------------~~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                             ++    .+             ++..+++.++..+.   .+|    +.|||.|.+.+..++++|||||-||
T Consensus       152 av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVG  228 (287)
T TIGR00343       152 AVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVG  228 (287)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEh
Confidence                   00    01             01124555555553   356    4799999999999999999999998

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=96.73  E-value=0.071  Score=57.74  Aligned_cols=183  Identities=17%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             CcccCceEEecCCCccccHHHHHHHHHcC-CeEE---eecCCCHHHH---HHhhhc-CcccccceEEe-cCCChhhHHHH
Q psy3862          52 KTYQGVPIIAANMDTVGTFEMAKHLAKHG-LFTT---IHKYYTLEEW---KAFAVQ-NPDVIKHVAVS-SGISAKDLAGL  122 (671)
Q Consensus        52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~g-glgv---Ih~n~~~Eeq---~~~i~~-~p~~~~~~~v~-~G~~~~d~~rl  122 (671)
                      ++.+..|++.+||.++|+..+.....+.| ++.+   +..+  ...+   ...... ..+...++.+. .|..++++.++
T Consensus         5 ~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~--~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~a   82 (321)
T PRK10415          5 QYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSN--PQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADA   82 (321)
T ss_pred             CccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcc--hhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHH
Confidence            56678899999999999988888666666 3322   2211  1011   111111 11111233332 35666776555


Q ss_pred             HHHHHhCCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEE-EEe----ccHHHHHHHHHC
Q psy3862         123 KEILAALPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIA-GNV----VTGEMVEELILS  180 (671)
Q Consensus       123 ~~l~~a~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~-g~v----~t~e~a~~Li~A  180 (671)
                      .+++.. .+.+.|-+|..=          |     +++...+.++.+++.  +|...++- |..    .+.+-++.|.++
T Consensus        83 a~~~~~-~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~  161 (321)
T PRK10415         83 ARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC  161 (321)
T ss_pred             HHHHHH-CCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence            554432 256666555321          1     123344556666553  47665553 211    234677889999


Q ss_pred             CCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH-cCCCEEEEc
Q psy3862         181 GADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL-SGADVIKVG  241 (671)
Q Consensus       181 GaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~-aGAdgvkVG  241 (671)
                      |+|.|.+.+...   . .......+...+..++   .+|  ..|+|.|.+.++.+++ .|||||.+|
T Consensus       162 G~d~i~vh~rt~---~-~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG  224 (321)
T PRK10415        162 GIQALTIHGRTR---A-CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG  224 (321)
T ss_pred             CCCEEEEecCcc---c-cccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence            999998844110   0 0000112333333332   356  6999999999999997 799999999

>cd04732 HisA HisA

Probab=96.71  E-value=0.02  Score=58.44  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      -.+.++++++..+....++|.+.+.++++.++++|||.++++.+.
T Consensus        61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~  105 (234)
T cd04732          61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA  105 (234)
T ss_pred             CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence            355677776654433567778899999999999999999886544

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=96.70  E-value=0.011  Score=59.64  Aligned_cols=168  Identities=24%  Similarity=0.249  Sum_probs=102.1

Q ss_pred             HHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCce--ee
Q psy3862         224 GEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKD--VM  301 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdD--Vl  301 (671)
                      ...|+++.+.||-|+|..               |      |-+.........++||.           =+|-||+|  |-
T Consensus        36 ~~mA~Aa~~gGAvgiR~~---------------g------v~dIkai~~~v~vPIIG-----------IiKrd~~~s~v~   83 (229)
T COG3010          36 AAMALAAEQGGAVGIRIE---------------G------VEDIKAIRAVVDVPIIG-----------IIKRDYPDSPVR   83 (229)
T ss_pred             HHHHHHHHhCCcceEeec---------------c------hhhHHHHHhhCCCCeEE-----------EEecCCCCCCce
Confidence            467899999999999987               2      33344444445678887           23455555  77


Q ss_pred             eecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC-CHHHHHHHHhcCccc
Q psy3862         302 LRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY-TLEEWKAFAVQNPDV  380 (671)
Q Consensus       302 l~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~-~~e~~~~~v~~~~~~  380 (671)
                      |-|-..+++-                -...++-|||  +|...                =.|.. ++++.+...+ .|  
T Consensus        84 ITptlkeVd~----------------L~~~Ga~IIA--~DaT~----------------R~RP~~~~~~~i~~~k-~~--  126 (229)
T COG3010          84 ITPTLKEVDA----------------LAEAGADIIA--FDATD----------------RPRPDGDLEELIARIK-YP--  126 (229)
T ss_pred             ecccHHHHHH----------------HHHCCCcEEE--eeccc----------------CCCCcchHHHHHHHhh-cC--
Confidence            7776655441                1123444554  22111                01333 4555555422 12  


Q ss_pred             ccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCc---eeeccccCchhHHH-
Q psy3862         381 IKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAK-  456 (671)
Q Consensus       381 ~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~-  456 (671)
                       ..+.-+-..+.||.-...++|+|++=  .+..||..+.-+.      .-|+++.+|+....   +|.-|...+.+.++ 
T Consensus       127 -~~l~MAD~St~ee~l~a~~~G~D~IG--TTLsGYT~~~~~~------~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~  197 (229)
T COG3010         127 -GQLAMADCSTFEEGLNAHKLGFDIIG--TTLSGYTGYTEKP------TEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKK  197 (229)
T ss_pred             -CcEEEeccCCHHHHHHHHHcCCcEEe--cccccccCCCCCC------CCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHH
Confidence             23333444455666666889999875  2557887644322      23555555655433   78889899999988 


Q ss_pred             HHHcCCcEEEECc
Q psy3862         457 AMGAGADFVMLGG  469 (671)
Q Consensus       457 ~l~aGAd~V~vG~  469 (671)
                      +++.||++|.||.
T Consensus       198 a~~~Ga~aVvVGs  210 (229)
T COG3010         198 AIEIGADAVVVGS  210 (229)
T ss_pred             HHHhCCeEEEECc
Confidence            7999999999994

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.055  Score=54.62  Aligned_cols=169  Identities=24%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             eEEecCCCccc-cHHHHHHHHHcCCeEEeecCCCHHHHHHhhh---cCccc--ccc-eEEe-cCCChhhHHHHHHHHHhC
Q psy3862          58 PIIAANMDTVG-TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAV---QNPDV--IKH-VAVS-SGISAKDLAGLKEILAAL  129 (671)
Q Consensus        58 Piv~a~M~~vt-~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~---~~p~~--~~~-~~v~-~G~~~~d~~rl~~l~~a~  129 (671)
                      |+=.+||+... -..||.|....|..|+ ..| ++++... ++   ..|..  +|+ +--+ +-+++ .++.+++|.++ 
T Consensus        23 al~~~pl~~~~iv~~mA~Aa~~gGAvgi-R~~-gv~dIka-i~~~v~vPIIGIiKrd~~~s~v~ITp-tlkeVd~L~~~-   97 (229)
T COG3010          23 ALPGEPLDSPEIVAAMALAAEQGGAVGI-RIE-GVEDIKA-IRAVVDVPIIGIIKRDYPDSPVRITP-TLKEVDALAEA-   97 (229)
T ss_pred             cCCCCCCcchhHHHHHHHHHHhCCcceE-eec-chhhHHH-HHhhCCCCeEEEEecCCCCCCceecc-cHHHHHHHHHC-
Confidence            44456777653 4678887666666676 222 3444322 22   22321  110 0000 00122 25677888888 


Q ss_pred             CCceEEEeeccCC-CCh-HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--EEE--ecccC
Q psy3862         130 PEIEYICLDVANG-YTQ-TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--TTR--LKNKT  203 (671)
Q Consensus       130 ~~~d~Ivld~a~G-~~~-~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~t~--v~~~~  203 (671)
                       ++++|.+|.-.- -+. .+-+++++  ..||+ ++..+-..|.|.+....++|+|+|      |+..  .|.  .+...
T Consensus        98 -Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~-~l~MAD~St~ee~l~a~~~G~D~I------GTTLsGYT~~~~~~~~  167 (229)
T COG3010          98 -GADIIAFDATDRPRPDGDLEELIAR--IKYPG-QLAMADCSTFEEGLNAHKLGFDII------GTTLSGYTGYTEKPTE  167 (229)
T ss_pred             -CCcEEEeecccCCCCcchHHHHHHH--hhcCC-cEEEeccCCHHHHHHHHHcCCcEE------ecccccccCCCCCCCC
Confidence             889999985421 122 34445554  34776 455557788999999999999999      3321  111  23334


Q ss_pred             Ccchhhhhccc--cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         204 SDFFLIQFYSC--IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       204 ~~~~~i~~i~~--~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |++.++..+..  .+  +=|++-|.+.++.+++.||++|-||
T Consensus       168 pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG  209 (229)
T COG3010         168 PDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVG  209 (229)
T ss_pred             CcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEEC
Confidence            77766655432  22  7899999999999999999999999

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=96.60  E-value=0.0061  Score=60.79  Aligned_cols=94  Identities=18%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccccccccccccccccccc--
Q psy3862         363 KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--  440 (671)
Q Consensus       363 r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--  440 (671)
                      |..++++...++++.-    .+.-+-..+-||.....++|+|++.-  +..||..+.-.       .-|+++.+++..  
T Consensus        77 Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~T--TLsGYT~~t~~-------~~pD~~lv~~l~~~  143 (192)
T PF04131_consen   77 RPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIGT--TLSGYTPYTKG-------DGPDFELVRELVQA  143 (192)
T ss_dssp             -SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE---TTTTSSTTSTT-------SSHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEEc--ccccCCCCCCC-------CCCCHHHHHHHHhC
Confidence            4566777777776532    12222223446677778999999984  56788765543       224444443322  


Q ss_pred             -CceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         441 -GGVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       441 -~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                       -.+|.-|.+.+.+.++ +|++||++|.||.
T Consensus       144 ~~pvIaEGri~tpe~a~~al~~GA~aVVVGs  174 (192)
T PF04131_consen  144 DVPVIAEGRIHTPEQAAKALELGAHAVVVGS  174 (192)
T ss_dssp             TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred             CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence             2277777788887766 8999999999994

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.49  E-value=0.21  Score=50.82  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=69.8

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCC-ceEEEEEeccHHHHHHHHHCCCcEEEECcC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPK-HVIIAGNVVTGEMVEELILSGADVIKVGIG  190 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~-~~li~g~v~t~e~a~~Li~AGaD~IvVdga  190 (671)
                      +.+.++. +.++.+++.  ++..+=+-.   ...+..+.++.+++.||. ..+=+|.+.+.++++..+++|+|+++.-+.
T Consensus        18 ~~~~~~~~~~~~a~~~g--Gi~~iEvt~---~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~   92 (206)
T PRK09140         18 GITPDEALAHVGALIEA--GFRAIEIPL---NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT   92 (206)
T ss_pred             CCCHHHHHHHHHHHHHC--CCCEEEEeC---CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC
Confidence            3444443 334555665  555543321   124566788888888885 445566889999999999999999965221


Q ss_pred             CCceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         191 PGSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       191 ~G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      .              ..+++...  .+| ..| +-|.+.+..+.++|||-+++
T Consensus        93 ~--------------~~v~~~~~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~  130 (206)
T PRK09140         93 D--------------PEVIRRAVALGMVVMPG-VATPTEAFAALRAGAQALKL  130 (206)
T ss_pred             C--------------HHHHHHHHHCCCcEEcc-cCCHHHHHHHHHcCCCEEEE
Confidence            1              11222221  133 344 88999999999999999986

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.46  E-value=0.017  Score=59.10  Aligned_cols=70  Identities=31%  Similarity=0.475  Sum_probs=44.9

Q ss_pred             cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862         388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      |..++.|+....++|+|++.+-   .... ...+.++.++..||.+.       =+-.|| +...++.+.+.+||++|=+
T Consensus       115 G~~T~~E~~~A~~~Gad~vklF---Pa~~-~G~~~ik~l~~~~p~ip-------~~atGG-I~~~N~~~~l~aGa~~vav  182 (213)
T PRK06552        115 GCMTVTEIVTALEAGSEIVKLF---PGST-LGPSFIKAIKGPLPQVN-------VMVTGG-VNLDNVKDWFAAGADAVGI  182 (213)
T ss_pred             CcCCHHHHHHHHHcCCCEEEEC---Cccc-CCHHHHHHHhhhCCCCE-------EEEECC-CCHHHHHHHHHCCCcEEEE
Confidence            4446777777788999999983   1111 11333444444444331       133677 5788888899999999987


Q ss_pred             Cc
Q psy3862         468 GG  469 (671)
Q Consensus       468 G~  469 (671)
                      |.
T Consensus       183 gs  184 (213)
T PRK06552        183 GG  184 (213)
T ss_pred             ch
Confidence            74

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.43  E-value=0.16  Score=50.74  Aligned_cols=101  Identities=24%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      +.++.+++.  ++..+-+-.-   .....+.++.+++.+|....=++.+.+.++++.++++|+|.++...-.        
T Consensus        28 ~~~~~~~~~--Gv~~vqlr~k---~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~--------   94 (187)
T PRK07455         28 QMAEAVAAG--GMRLIEITWN---SDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVD--------   94 (187)
T ss_pred             HHHHHHHHC--CCCEEEEeCC---CCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCC--------
Confidence            455666666  6666655322   123455666666667754444556777899999999999999652211        


Q ss_pred             cccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         200 KNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       200 ~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                            .++++...  .++ +-| +.|...+..+.++|||-+++
T Consensus        95 ------~~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~  131 (187)
T PRK07455         95 ------PELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKV  131 (187)
T ss_pred             ------HHHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEE
Confidence                  01111111  122 345 89999999999999999987

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=96.40  E-value=0.027  Score=59.48  Aligned_cols=116  Identities=18%  Similarity=0.163  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC---  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~---  195 (671)
                      +..++.++++  ++|+|  | +...+.+.-++++.+|+.| +..++| -+.|.+.+.+.++.|+|.|.-...+++.-   
T Consensus        77 ~~Ea~~L~ea--GvDiI--D-aT~r~rP~~~~~~~iK~~~-~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~  149 (283)
T cd04727          77 FVEAQILEAL--GVDMI--D-ESEVLTPADEEHHIDKHKF-KVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVE  149 (283)
T ss_pred             HHHHHHHHHc--CCCEE--e-ccCCCCcHHHHHHHHHHHc-CCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHH
Confidence            5677888888  77877  4 4344455666777777788 544555 55788999999999999997776655431   


Q ss_pred             -EE------------------E----ecccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 -TT------------------R----LKNKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 -~t------------------~----v~~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       ++                  .    -+...+++.++..+.   .+|    +-|||.|.+.++.++++|||||-||
T Consensus       150 ~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG  225 (283)
T cd04727         150 AVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVG  225 (283)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence             00                  0    001124555544442   256    3799999999999999999999998

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.33  E-value=0.071  Score=54.51  Aligned_cols=109  Identities=23%  Similarity=0.224  Sum_probs=75.5

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.+.++. +.++.+.+.  +.+.+=+-.   ...+..+.++.+++.||+..+-+|.+.+.+.++.++++|+|+++.   +
T Consensus        23 ~~~~~~a~~i~~al~~~--Gi~~iEitl---~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs---P   94 (212)
T PRK05718         23 INKLEDAVPLAKALVAG--GLPVLEVTL---RTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS---P   94 (212)
T ss_pred             cCCHHHHHHHHHHHHHc--CCCEEEEec---CCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC---C
Confidence            4444443 344555555  555543321   134678888999888998777888999999999999999999964   3


Q ss_pred             CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +..          + .+++...  .+|..=|+.|...+..++++||+-||+
T Consensus        95 ~~~----------~-~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKl  134 (212)
T PRK05718         95 GLT----------P-PLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKF  134 (212)
T ss_pred             CCC----------H-HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEE
Confidence            211          1 2233332  245555888888899999999999998

>PLN02826 dihydroorotate dehydrogenase

Probab=96.32  E-value=0.05  Score=60.84  Aligned_cols=80  Identities=21%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             CCceEEEEEec---cHHHHHHHHHCCCcEEEECc-----------------CCCceEEEEecccCCcchhhhhc-c----
Q psy3862         159 PKHVIIAGNVV---TGEMVEELILSGADVIKVGI-----------------GPGSVCTTRLKNKTSDFFLIQFY-S----  213 (671)
Q Consensus       159 P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdg-----------------a~G~~~~t~v~~~~~~~~~i~~i-~----  213 (671)
                      |...|++.+..   ..+-++.++++|+|.|++--                 .+|.+ -.-+++  .++.++..+ +    
T Consensus       264 Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlS-G~pl~~--~sl~~v~~l~~~~~~  340 (409)
T PLN02826        264 PLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLS-GKPLFD--LSTEVLREMYRLTRG  340 (409)
T ss_pred             ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcC-CccccH--HHHHHHHHHHHHhCC
Confidence            65666665543   23558889999999997732                 01111 000000  011122222 1    


Q ss_pred             ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 ~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+|  ..|||.|++.+.+.|.+||+.|+|+
T Consensus       341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~  370 (409)
T PLN02826        341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLY  370 (409)
T ss_pred             CCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence            245  6999999999999999999999998

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.30  E-value=0.18  Score=51.17  Aligned_cols=124  Identities=16%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEE--ccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTI--HKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvi--hr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id  409 (671)
                      ++||+-  +|.+.+.+.+..+.+.|.=+++  ..-.++++..+++.....+ ..-......+.+++.++.+.|+|++.+-
T Consensus        72 ~iPi~~--~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~-g~~~~v~v~~~~e~~~~~~~g~~~i~~t  148 (217)
T cd00331          72 SLPVLR--KDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELAREL-GMEVLVEVHDEEELERALALGAKIIGIN  148 (217)
T ss_pred             CCCEEE--CCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHcCCCEEEEe
Confidence            589985  8899999999999999988887  3445554443433322111 0000111236678888889999999875


Q ss_pred             cccccccc-cccccccccccccccccccccccC---cee-eccccCchhHHHHHHcCCcEEEECc
Q psy3862         410 GMFAGHDQ-SGGELTNIEYMFFPLVGDMNSYLG---GVV-DGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       410 ~~a~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~i-~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                       ...++.. ..++.++          .+++.++   .++ .||+-...++.+++.+|||+|.||.
T Consensus       149 -~~~~~~~~~~~~~~~----------~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs  202 (217)
T cd00331         149 -NRDLKTFEVDLNTTE----------RLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE  202 (217)
T ss_pred             -CCCccccCcCHHHHH----------HHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence             2223311 1112222          2223221   233 4664333666668899999999995

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=96.21  E-value=0.018  Score=58.67  Aligned_cols=66  Identities=21%  Similarity=0.061  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEE-EEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCT-TRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~-t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +.+.++.+.++|||+|++|.+...... ..+      ..+++.+.   .+|+..++.|.+.++.+.++|+|.+.++
T Consensus        77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~------~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~  146 (221)
T PRK01130         77 TLKEVDALAAAGADIIALDATLRPRPDGETL------AELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTT  146 (221)
T ss_pred             CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCH------HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence            567899999999999999876532100 000      01111221   1234556778899999999999988654

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=96.19  E-value=0.02  Score=60.69  Aligned_cols=116  Identities=17%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC---  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~---  195 (671)
                      +..++.+.+.  ++|+|  | ....+.+.-+.++.+|+.| ....+|+ ..|.+.+.+.++.|+|.|.--|-.|+.-   
T Consensus        86 ~~Ea~~L~~~--GvDiI--D-~Te~lrpad~~~~~~K~~f-~~~fmad-~~~l~EAlrai~~GadmI~Ttge~gtg~v~~  158 (293)
T PRK04180         86 FVEAQILEAL--GVDYI--D-ESEVLTPADEEYHIDKWDF-TVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVE  158 (293)
T ss_pred             HHHHHHHHHc--CCCEE--e-ccCCCCchHHHHHHHHHHc-CCCEEcc-CCCHHHHHHHHHCCCCeeeccCCCCCccHHH
Confidence            4556666666  77777  4 3334455556777777778 4455654 4677888889999999998887656530   


Q ss_pred             -EEE-------ec---------------ccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 -TTR-------LK---------------NKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 -~t~-------v~---------------~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .++       ++               ...+++.++..+.   .+|    +.|||.|.+.++.++++|||+|-||
T Consensus       159 av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVG  234 (293)
T PRK04180        159 AVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVG  234 (293)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEc
Confidence             110       00               0124555555553   357    4699999999999999999999998

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=96.14  E-value=0.12  Score=56.38  Aligned_cols=181  Identities=16%  Similarity=0.134  Sum_probs=98.3

Q ss_pred             CceEEecCCCccccHHHHHHHHHcCC--eE---EeecC-CCHHHHHHhhhcCcccccceEEe-cCCChhhHHHHHHHHHh
Q psy3862          56 GVPIIAANMDTVGTFEMAKHLAKHGL--FT---TIHKY-YTLEEWKAFAVQNPDVIKHVAVS-SGISAKDLAGLKEILAA  128 (671)
Q Consensus        56 ~~Piv~a~M~~vt~~~lA~Ala~~gg--lg---vIh~n-~~~Eeq~~~i~~~p~~~~~~~v~-~G~~~~d~~rl~~l~~a  128 (671)
                      +-|++.+||.++|+..+..-..+.|+  +-   +++.. .....+.++....+ ...|+.+. .|..++++.++.+++..
T Consensus        10 ~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~-~e~p~~vQl~g~~p~~~~~aA~~~~~   88 (333)
T PRK11815         10 SRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDP-EEHPVALQLGGSDPADLAEAAKLAED   88 (333)
T ss_pred             CCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCC-CCCcEEEEEeCCCHHHHHHHHHHHHh
Confidence            45899999999999877665555564  22   13322 11111222222222 22355443 25666666655554443


Q ss_pred             CCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEEEEe---c----cHHHHHHHHHCCCcE
Q psy3862         129 LPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIAGNV---V----TGEMVEELILSGADV  184 (671)
Q Consensus       129 ~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~g~v---~----t~e~a~~Li~AGaD~  184 (671)
                       .+.|.|-++..-          |     .++...+.++.+++.  +|...++-...   .    +.+.++.|.++|+|.
T Consensus        89 -~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~  167 (333)
T PRK11815         89 -WGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDT  167 (333)
T ss_pred             -cCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCE
Confidence             155666554321          1     123344556666653  56655542221   1    235678889999999


Q ss_pred             EEECcCC----CceEE--EEecccCCcchhhhhc----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         185 IKVGIGP----GSVCT--TRLKNKTSDFFLIQFY----SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       185 IvVdga~----G~~~~--t~v~~~~~~~~~i~~i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+..    |.+-.  ..+..  .+...+..+    ..+|  ..|+|-|.+.+..+++ |||||.||
T Consensus       168 i~vh~Rt~~~~g~~~~~~~~~~~--~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG  233 (333)
T PRK11815        168 FIVHARKAWLKGLSPKENREIPP--LDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG  233 (333)
T ss_pred             EEEcCCchhhcCCCccccccCCC--cCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence            9986532    21100  00000  011122112    1245  6899999999999997 79999999

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=96.13  E-value=0.01  Score=59.89  Aligned_cols=71  Identities=30%  Similarity=0.409  Sum_probs=43.3

Q ss_pred             cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862         388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      |+.++.|+....++|+|++-+=   .....--.+.++.++.-||.+.    |   .-.|| |...++...+++|+.++-+
T Consensus       107 G~~TptEi~~A~~~G~~~vK~F---PA~~~GG~~~ik~l~~p~p~~~----~---~ptGG-V~~~N~~~~l~ag~~~vg~  175 (196)
T PF01081_consen  107 GVMTPTEIMQALEAGADIVKLF---PAGALGGPSYIKALRGPFPDLP----F---MPTGG-VNPDNLAEYLKAGAVAVGG  175 (196)
T ss_dssp             EESSHHHHHHHHHTT-SEEEET---TTTTTTHHHHHHHHHTTTTT-E----E---EEBSS---TTTHHHHHTSTTBSEEE
T ss_pred             CcCCHHHHHHHHHCCCCEEEEe---cchhcCcHHHHHHHhccCCCCe----E---EEcCC-CCHHHHHHHHhCCCEEEEE
Confidence            5556788888889999999975   2221111234444555555553    1   22566 6788888899999999876


Q ss_pred             Cc
Q psy3862         468 GG  469 (671)
Q Consensus       468 G~  469 (671)
                      |.
T Consensus       176 Gs  177 (196)
T PF01081_consen  176 GS  177 (196)
T ss_dssp             ES
T ss_pred             Cc
Confidence            64

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.09  E-value=0.012  Score=62.33  Aligned_cols=88  Identities=19%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV  222 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~  222 (671)
                      .+.+.++++|+.+|...++..-+.+.|.++.++++|+|+|-+|.-.-..   +...++...|+..       +-+.||| 
T Consensus       167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~-------ieAsGgI-  238 (273)
T PRK05848        167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRNANYPHVL-------LEASGNI-  238 (273)
T ss_pred             cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeE-------EEEECCC-
Confidence            4566778778888865667668889999999999999999887532110   0000111112110       1279999 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.++++.++|+|.+=+|
T Consensus       239 t~~ni~~ya~~GvD~IsvG  257 (273)
T PRK05848        239 TLENINAYAKSGVDAISSG  257 (273)
T ss_pred             CHHHHHHHHHcCCCEEEeC
Confidence            9999999999999999887

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.08  E-value=0.044  Score=56.03  Aligned_cols=60  Identities=22%  Similarity=0.397  Sum_probs=40.5

Q ss_pred             HHHHHHHHHCCCcEEEECc-CCCc-eEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEE
Q psy3862         171 GEMVEELILSGADVIKVGI-GPGS-VCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVI  238 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdg-a~G~-~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgv  238 (671)
                      .+.++.|.+.|+++|-+.- .+.. -.++.+++++|++.+        -||-|-|.++++.++++||+-+
T Consensus        30 ~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~I--------GAGTVl~~~~a~~a~~aGA~Fi   91 (212)
T PRK05718         30 VPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALI--------GAGTVLNPEQLAQAIEAGAQFI   91 (212)
T ss_pred             HHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEE--------EEeeccCHHHHHHHHHcCCCEE
Confidence            4678889999999997742 1110 122233333333211        4999999999999999999988

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=96.03  E-value=0.22  Score=53.84  Aligned_cols=188  Identities=14%  Similarity=0.132  Sum_probs=103.7

Q ss_pred             ceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHH------HHHhhh---c---CcccccceEEec-CCChhhHHHH
Q psy3862          57 VPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEE------WKAFAV---Q---NPDVIKHVAVSS-GISAKDLAGL  122 (671)
Q Consensus        57 ~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Ee------q~~~i~---~---~p~~~~~~~v~~-G~~~~d~~rl  122 (671)
                      +|++-+||.++|+..+.....+.|+.+.... +.+.+.      ......   .   ......|+.+.. |..++++.++
T Consensus         1 ~~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~a   80 (312)
T PRK10550          1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAEN   80 (312)
T ss_pred             CCeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHH
Confidence            4899999999999888886677775443221 111110      010000   0   001123454432 5666666544


Q ss_pred             HHHHHhCCCceEEEeeccC--------C-------CChHHHHHHHHHHHh----CCCceEEEEEe----ccHHHHHHHHH
Q psy3862         123 KEILAALPEIEYICLDVAN--------G-------YTQTFVDFVRRIREM----YPKHVIIAGNV----VTGEMVEELIL  179 (671)
Q Consensus       123 ~~l~~a~~~~d~Ivld~a~--------G-------~~~~~~~~ik~lr~~----~P~~~li~g~v----~t~e~a~~Li~  179 (671)
                      .+.+.. .+.+.|-++...        |       .+....+.++.+++.    .|...++-...    .+.+.++.|.+
T Consensus        81 A~~~~~-~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~  159 (312)
T PRK10550         81 AARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ  159 (312)
T ss_pred             HHHHHH-cCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence            333332 155666555332        1       123344556666654    35555553221    13577888999


Q ss_pred             CCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHH-HcCCCEEEEcccCCCccccc
Q psy3862         180 SGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELI-LSGADVIKVGIGPGSVCTTR  251 (671)
Q Consensus       180 AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li-~aGAdgvkVG~~~~~~~~Tr  251 (671)
                      +|+|.|.|.+.-.   ...  ...+  +...+.-++   .+|  .-|+|-|.+.+..++ ..|||+|.||          
T Consensus       160 ~Gvd~i~Vh~Rt~---~~~--y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG----------  224 (312)
T PRK10550        160 AGATELVVHGRTK---EDG--YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG----------  224 (312)
T ss_pred             cCCCEEEECCCCC---ccC--CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc----------
Confidence            9999999954110   000  0001  222222222   256  689999999999999 5899999999          


Q ss_pred             eecccCcchh
Q psy3862         252 LKTGVGYPQF  261 (671)
Q Consensus       252 ~V~gv~~~~~  261 (671)
                       -..++.|-+
T Consensus       225 -Rg~l~nP~l  233 (312)
T PRK10550        225 -RGALNIPNL  233 (312)
T ss_pred             -HHhHhCcHH
Confidence             445667744

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=96.03  E-value=0.074  Score=53.75  Aligned_cols=110  Identities=26%  Similarity=0.389  Sum_probs=73.2

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.+.++. +.++.+++.  +...+=+..   ...+..+.++.+++.||+..+=+|.|.|.+++++++++||++++-   +
T Consensus        16 ~~~~~~a~~~~~al~~g--Gi~~iEiT~---~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS---P   87 (196)
T PF01081_consen   16 GDDPEDAVPIAEALIEG--GIRAIEITL---RTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS---P   87 (196)
T ss_dssp             TSSGGGHHHHHHHHHHT--T--EEEEET---TSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE---S
T ss_pred             cCCHHHHHHHHHHHHHC--CCCEEEEec---CCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC---C
Confidence            3444444 455667776  555543221   135677888888888998777778899999999999999999953   3


Q ss_pred             CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +-           +-.+++.+.  .+|..=|+.|..-+..++++|++-||+=
T Consensus        88 ~~-----------~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~F  128 (196)
T PF01081_consen   88 GF-----------DPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLF  128 (196)
T ss_dssp             S-------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEET
T ss_pred             CC-----------CHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEe
Confidence            21           112333332  3566679999999999999999999986

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=96.03  E-value=0.095  Score=56.75  Aligned_cols=189  Identities=17%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             eEEecCCCccccHHHHHHHHHcCC--eEE---eecCCCH-HHHHHhhhcCcccccceEEe-cCCChhhHHHHHHHHHhCC
Q psy3862          58 PIIAANMDTVGTFEMAKHLAKHGL--FTT---IHKYYTL-EEWKAFAVQNPDVIKHVAVS-SGISAKDLAGLKEILAALP  130 (671)
Q Consensus        58 Piv~a~M~~vt~~~lA~Ala~~gg--lgv---Ih~n~~~-Eeq~~~i~~~p~~~~~~~v~-~G~~~~d~~rl~~l~~a~~  130 (671)
                      |++-+||.++|+..+...+.+.|.  +-+   ++...-. ....++....| ...|+.+. .|..++++.++..++... 
T Consensus         2 ~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~-~e~p~~vQl~g~~p~~~~~aA~~~~~~-   79 (318)
T TIGR00742         2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSP-EESPVALQLGGSDPNDLAKCAKIAEKR-   79 (318)
T ss_pred             CEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCC-CCCcEEEEEccCCHHHHHHHHHHHHhC-
Confidence            688999999999887776666664  322   3322111 11112221222 23355443 256667776666665532 


Q ss_pred             CceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEEEEe-------ccHHHHHHHHHCCCcEEE
Q psy3862         131 EIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIAGNV-------VTGEMVEELILSGADVIK  186 (671)
Q Consensus       131 ~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~g~v-------~t~e~a~~Li~AGaD~Iv  186 (671)
                      +.+.|-+|..-          |     .++...+.++.+++.  .|...++--..       .+.+.++.|.++|+|+|.
T Consensus        80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it  159 (318)
T TIGR00742        80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI  159 (318)
T ss_pred             CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence            55666555321          1     123344556666553  57666663221       123558889999999998


Q ss_pred             ECcC----CCceEEEEecccCC--cchhhhhc----cccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceec
Q psy3862         187 VGIG----PGSVCTTRLKNKTS--DFFLIQFY----SCIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT  254 (671)
Q Consensus       187 Vdga----~G~~~~t~v~~~~~--~~~~i~~i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~  254 (671)
                      +-+.    +|.+-...  ...+  +...+..+    ..+|  .-|+|-|.+.+...+. |||||.||           -.
T Consensus       160 vHgRt~~~qg~sg~~~--~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig-----------Rg  225 (318)
T TIGR00742       160 VHARKAWLSGLSPKEN--REIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG-----------RE  225 (318)
T ss_pred             EeCCchhhcCCCcccc--ccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC-----------HH
Confidence            8542    22110000  0001  11111111    1356  5899999999999996 99999999           44


Q ss_pred             ccCcchhh
Q psy3862         255 GVGYPQFS  262 (671)
Q Consensus       255 gv~~~~~~  262 (671)
                      ..+.|.+-
T Consensus       226 al~nP~if  233 (318)
T TIGR00742       226 AYENPYLL  233 (318)
T ss_pred             HHhCCHHH
Confidence            55677543

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.02  E-value=0.12  Score=52.55  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.+.++. +.++.+++.  +...+=+.-   ...+..+.++++++.||...+=+|.|.|.+++++++++|+++++-   +
T Consensus        12 ~~~~~~a~~ia~al~~g--Gi~~iEit~---~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS---P   83 (201)
T PRK06015         12 IDDVEHAVPLARALAAG--GLPAIEITL---RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS---P   83 (201)
T ss_pred             cCCHHHHHHHHHHHHHC--CCCEEEEeC---CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC---C
Confidence            3344433 345556665  555432221   134567888888888997666677899999999999999999953   3


Q ss_pred             CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +.           +-.+++...  .+|..=|+.|..-+.+++++||+-||+=
T Consensus        84 ~~-----------~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~F  124 (201)
T PRK06015         84 GT-----------TQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFF  124 (201)
T ss_pred             CC-----------CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence            21           112333332  3566679999999999999999999986

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.95  E-value=0.17  Score=53.18  Aligned_cols=128  Identities=17%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCe--EEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLF--TTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Ggl--gvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id  409 (671)
                      ++||+-  .|.++.+-++.+....|.=  .++-...++++..+++....++ ..-.-+-.-+.+++.+..++|+|+|.+.
T Consensus       111 ~iPvl~--kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l-Gl~~lvevh~~~E~~~A~~~gadiIgin  187 (260)
T PRK00278        111 SLPVLR--KDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSL-GLDVLVEVHDEEELERALKLGAPLIGIN  187 (260)
T ss_pred             CCCEEe--eeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence            589996  8899999886666666543  3333454555555555432221 0000011224577777889999999974


Q ss_pred             ccccccc-ccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         410 GMFAGHD-QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       410 ~~a~gh~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ... =+. +-..+....+...+|.      -..-+..||+....++.+++.+|||+|.||.
T Consensus       188 ~rd-l~~~~~d~~~~~~l~~~~p~------~~~vIaegGI~t~ed~~~~~~~Gad~vlVGs  241 (260)
T PRK00278        188 NRN-LKTFEVDLETTERLAPLIPS------DRLVVSESGIFTPEDLKRLAKAGADAVLVGE  241 (260)
T ss_pred             CCC-cccccCCHHHHHHHHHhCCC------CCEEEEEeCCCCHHHHHHHHHcCCCEEEECH
Confidence            100 000 0001111111111110      0011335776555666668899999999985

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=95.94  E-value=0.46  Score=48.26  Aligned_cols=178  Identities=21%  Similarity=0.207  Sum_probs=96.7

Q ss_pred             eEEecCCCccccHHHHHHHHHcC-CeE---EeecCCCHHHHHH---hhhcCcccccceEEec-CCChhhHHHHHHHHHhC
Q psy3862          58 PIIAANMDTVGTFEMAKHLAKHG-LFT---TIHKYYTLEEWKA---FAVQNPDVIKHVAVSS-GISAKDLAGLKEILAAL  129 (671)
Q Consensus        58 Piv~a~M~~vt~~~lA~Ala~~g-glg---vIh~n~~~Eeq~~---~i~~~p~~~~~~~v~~-G~~~~d~~rl~~l~~a~  129 (671)
                      |++.+||.++|+..+...+.+.| -+-   +++.+........   +.... ....|+.++. |..++++.+..+.+.. 
T Consensus         1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~qi~g~~~~~~~~aa~~~~~-   78 (231)
T cd02801           1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRN-PEERPLIVQLGGSDPETLAEAAKIVEE-   78 (231)
T ss_pred             CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccC-ccCCCEEEEEcCCCHHHHHHHHHHHHh-
Confidence            57889999999987777555555 111   1333211111111   11111 1223444433 3456666554443332 


Q ss_pred             CCceEEEeeccCC---------------CChHHHHHHHHHHHhC--CCceEEEEEe----ccHHHHHHHHHCCCcEEEEC
Q psy3862         130 PEIEYICLDVANG---------------YTQTFVDFVRRIREMY--PKHVIIAGNV----VTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       130 ~~~d~Ivld~a~G---------------~~~~~~~~ik~lr~~~--P~~~li~g~v----~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .+.+.|-++.+.-               .++...+.++.+++..  |...++-...    .+.+.++.|.++|+|.|.+.
T Consensus        79 aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~  158 (231)
T cd02801          79 LGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVH  158 (231)
T ss_pred             cCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEEC
Confidence            2677777765431               2344556677776654  3333332111    23466778889999999885


Q ss_pred             cCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862         189 IGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG  241 (671)
Q Consensus       189 ga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG  241 (671)
                      +.....   ... ...++..+..+.   .+|  +.|||-|.+.+..+++. |||+|.+|
T Consensus       159 ~~~~~~---~~~-~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig  213 (231)
T cd02801         159 GRTREQ---RYS-GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG  213 (231)
T ss_pred             CCCHHH---cCC-CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence            421100   000 011222222221   346  68999999999999998 89999988

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=95.84  E-value=0.13  Score=52.50  Aligned_cols=52  Identities=25%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             eEEEccCCCHH--------HHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862         358 FTTIHKYYTLE--------EWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       358 lgvihr~~~~e--------~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id  409 (671)
                      .-++||..|.|        +..+.+++..+..-.++.+||++++++..+...|+|++++.
T Consensus       133 ~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvG  192 (217)
T COG0269         133 QVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVG  192 (217)
T ss_pred             EEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEEC
Confidence            34688877766        33445555444445789999999999999999999999986

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=95.83  E-value=0.064  Score=51.73  Aligned_cols=114  Identities=25%  Similarity=0.317  Sum_probs=66.3

Q ss_pred             HHHHhCCCceEEEeeccCCC-ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHH-HHHCCCcEEEECcCCCceEEEEecc
Q psy3862         124 EILAALPEIEYICLDVANGY-TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEE-LILSGADVIKVGIGPGSVCTTRLKN  201 (671)
Q Consensus       124 ~l~~a~~~~d~Ivld~a~G~-~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~-Li~AGaD~IvVdga~G~~~~t~v~~  201 (671)
                      .+.++  +.+.+.+...+.+ ++...+.++.+++.+|...++..-....+..+. +.+.|+|.|.++...++........
T Consensus        79 ~~~~~--g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~  156 (200)
T cd04722          79 AARAA--GADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVP  156 (200)
T ss_pred             HHHHc--CCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCch
Confidence            34444  6788888766543 133566677777666544444432222221222 7899999999987544321110000


Q ss_pred             cCCcchhhhhc---cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         202 KTSDFFLIQFY---SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       202 ~~~~~~~i~~i---~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                        .....+..+   ..+|  .+|||.+++.+..++++|||++-||
T Consensus       157 --~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg  199 (200)
T cd04722         157 --IADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG  199 (200)
T ss_pred             --hHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence              000011111   1245  7999999999999999999999887

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>KOG0538|consensus

Probab=95.69  E-value=0.089  Score=56.00  Aligned_cols=260  Identities=20%  Similarity=0.265  Sum_probs=149.6

Q ss_pred             CceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCC--CC----CCCHHHHHHHHHcCCeEEEc--cCCCHH
Q psy3862         297 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANM--DT----VGTFEMAKHLAKHGLFTTIH--KYYTLE  368 (671)
Q Consensus       297 fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~M--Dt----V~~~~mA~~la~~Gglgvih--r~~~~e  368 (671)
                      |.-++|+|.+-  ..-+.+|+++++-     ......||.-||.  .-    =+|...|++-++.|-+-++-  -.+|+|
T Consensus        40 F~ri~~rPr~L--~dVs~iD~sTtvl-----G~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~E  112 (363)
T KOG0538|consen   40 FRRILFRPRIL--RDVSKIDTSTTVL-----GQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVE  112 (363)
T ss_pred             HHhhhccchhh--eecccccccceec-----cccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHH
Confidence            67789999872  2236889998864     3556789987753  22    36777899999988888887  578899


Q ss_pred             HHHHHHhcCcccccceeeecccChhhH-HHH----HHcCCcEEEE--ccccccccccc----------cccccc------
Q psy3862         369 EWKAFAVQNPDVIKHVADGGCTSPGDV-AKA----MGAGADFVML--GGMFAGHDQSG----------GELTNI------  425 (671)
Q Consensus       369 ~~~~~v~~~~~~~~~v~~~~~~~~~~~-~~l----~~aG~d~i~i--d~~a~gh~~~~----------~~~~~~------  425 (671)
                      |.++.....   ++ +.--=.-++.++ +.|    -++|...|++  |.-.-|+-.+-          +.+.+.      
T Consensus       113 dI~~aap~~---~r-wfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~  188 (363)
T KOG0538|consen  113 DIASAAPPG---IR-WFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLT  188 (363)
T ss_pred             HHHhhCCCC---cE-EEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccc
Confidence            988754211   10 000000122232 222    3467666654  31112332100          000000      


Q ss_pred             --c-----------------ccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862         426 --E-----------------YMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKD  485 (671)
Q Consensus       426 --~-----------------~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~  485 (671)
                        .                 ..-.-++.|+++... ++|.=|+....|..++.+.|+++|.|..  .|     +|     
T Consensus       189 ~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSN--HG-----gR-----  256 (363)
T KOG0538|consen  189 EVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSN--HG-----GR-----  256 (363)
T ss_pred             cCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeC--CC-----cc-----
Confidence              0                 001112333333332 2667786666666668999999999986  33     22     


Q ss_pred             CeEEEEeeCcccHHHHHhhcccccccc--ccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEec
Q psy3862         486 GKKVKLFYGMSSTTAMDKHAGGVAEYR--AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT  563 (671)
Q Consensus       486 g~~~k~g~G~~q~tAi~~~a~~~~~y~--~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~  563 (671)
                          |+-+...+.++..+.-.++..-.  .-||+   |+..-||-||+|-       |+             ++.|+   
T Consensus       257 ----QlD~vpAtI~~L~Evv~aV~~ri~V~lDGG---VR~G~DVlKALAL-------GA-------------k~Vfi---  306 (363)
T KOG0538|consen  257 ----QLDYVPATIEALPEVVKAVEGRIPVFLDGG---VRRGTDVLKALAL-------GA-------------KGVFI---  306 (363)
T ss_pred             ----ccCcccchHHHHHHHHHHhcCceEEEEecC---cccchHHHHHHhc-------cc-------------ceEEe---
Confidence                34567778888876543332100  01221   6888899999984       21             13343   


Q ss_pred             ccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccc
Q psy3862         564 AQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTY  643 (671)
Q Consensus       564 ~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y  643 (671)
                                     | |-  .-||-..                      +|..       -++++|.-|..-+..+|+.
T Consensus       307 ---------------G-RP--~v~gLA~----------------------~Ge~-------GV~~vl~iL~~efe~tmaL  339 (363)
T KOG0538|consen  307 ---------------G-RP--IVWGLAA----------------------KGEA-------GVKKVLDILRDEFELTMAL  339 (363)
T ss_pred             ---------------c-Cc--hheeecc----------------------ccch-------hHHHHHHHHHHHHHHHHHH
Confidence                           1 00  1133222                      2211       2788899999999999999


Q ss_pred             cCccccccccccc
Q psy3862         644 VGASKLKELPRRA  656 (671)
Q Consensus       644 ~Ga~~l~el~~~a  656 (671)
                      .|.++++|+.++.
T Consensus       340 sGc~sv~ei~~~~  352 (363)
T KOG0538|consen  340 SGCRSVKEITRNH  352 (363)
T ss_pred             hCCCchhhhCccc
Confidence            9999999998864

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=95.65  E-value=0.01  Score=65.29  Aligned_cols=108  Identities=24%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             ccCCCHHHHHHHHhcCccccc----ceeeecccChhhHHH-HHHcCCcEEEEccccccccccccccccc--------ccc
Q psy3862         362 HKYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELTNI--------EYM  428 (671)
Q Consensus       362 hr~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~-l~~aG~d~i~id~~a~gh~~~~~~~~~~--------~~~  428 (671)
                      |-.+|+|++.++|.+++++-.    .++-+.+...+++.. ..++|+|+|+|||.--|-.-....+.+.        +..
T Consensus       182 ~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~  261 (368)
T PF01645_consen  182 HDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR  261 (368)
T ss_dssp             TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence            567899999999987765431    222222333355555 5789999999997553321111111110        111


Q ss_pred             cccccc--ccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         429 FFPLVG--DMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       429 ~~~~~~--~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .+-.|.  .+|+.+.=++.||.....++++++..|||.|-+|.
T Consensus       262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt  304 (368)
T PF01645_consen  262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGT  304 (368)
T ss_dssp             HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SH
T ss_pred             HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecc
Confidence            111110  11222222678999999999999999999997773

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=95.65  E-value=0.16  Score=55.24  Aligned_cols=191  Identities=23%  Similarity=0.274  Sum_probs=106.2

Q ss_pred             CcccCceEEecCCCccccHHHHHHHHHcCC--eE---EeecCCCHHHHHHhhhcCc--ccccceEEec-CCChhhHHHHH
Q psy3862          52 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL--FT---TIHKYYTLEEWKAFAVQNP--DVIKHVAVSS-GISAKDLAGLK  123 (671)
Q Consensus        52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~gg--lg---vIh~n~~~Eeq~~~i~~~p--~~~~~~~v~~-G~~~~d~~rl~  123 (671)
                      +..++-+++-+||.++|+..+..-..+.|.  +-   +++..-...-..+.....+  +...|+.+.. |..++.+.+..
T Consensus         6 ~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~eaA   85 (323)
T COG0042           6 LIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAA   85 (323)
T ss_pred             cccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHHH
Confidence            566678899999999999887774444354  21   1332200000000111111  1123444432 34555555554


Q ss_pred             HHHHhCCCceEEEeecc----------CC-----CChHHHHHHHHHHHhC---CCceEEEEEe-----ccHHHHHHHHHC
Q psy3862         124 EILAALPEIEYICLDVA----------NG-----YTQTFVDFVRRIREMY---PKHVIIAGNV-----VTGEMVEELILS  180 (671)
Q Consensus       124 ~l~~a~~~~d~Ivld~a----------~G-----~~~~~~~~ik~lr~~~---P~~~li~g~v-----~t~e~a~~Li~A  180 (671)
                      +++... +.+.|-+|..          .|     .++-+.+.++.+++..   |...|+=-..     ...+-++.+.++
T Consensus        86 ~~~~~~-g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~  164 (323)
T COG0042          86 KIAEEL-GADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDA  164 (323)
T ss_pred             HHHHhc-CCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhc
Confidence            444432 3455544421          01     1344555666665543   6655553322     235789999999


Q ss_pred             CCcEEEECc---CCCce------EEEEecccCCcchhhhhccccC--CccccccHHHHHHHHH-cCCCEEEEcccCCCcc
Q psy3862         181 GADVIKVGI---GPGSV------CTTRLKNKTSDFFLIQFYSCIP--QAGNVVTGEMVEELIL-SGADVIKVGIGPGSVC  248 (671)
Q Consensus       181 GaD~IvVdg---a~G~~------~~t~v~~~~~~~~~i~~i~~~p--~aGnV~t~~~a~~li~-aGAdgvkVG~~~~~~~  248 (671)
                      |+|.|.|.+   .++..      .+.++++.+++         +|  +-|+|-|.+.++..++ .|+|||.||       
T Consensus       165 g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~---------ipvi~NGdI~s~~~a~~~l~~tg~DgVMig-------  228 (323)
T COG0042         165 GADALTVHGRTRAQGYLGPADWDYIKELKEAVPS---------IPVIANGDIKSLEDAKEMLEYTGADGVMIG-------  228 (323)
T ss_pred             CCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC---------CeEEeCCCcCCHHHHHHHHHhhCCCEEEEc-------
Confidence            999999955   22211      11122222222         44  6899999999999998 689999999       


Q ss_pred             ccceecccCcchhhh
Q psy3862         249 TTRLKTGVGYPQFSA  263 (671)
Q Consensus       249 ~Tr~V~gv~~~~~~~  263 (671)
                          -...|.|-+-.
T Consensus       229 ----Rga~~nP~l~~  239 (323)
T COG0042         229 ----RGALGNPWLFR  239 (323)
T ss_pred             ----HHHccCCcHHH
Confidence                66677886543

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.62  E-value=0.069  Score=54.15  Aligned_cols=60  Identities=15%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             HHHHHHHHHCCCcEEEECcC-CCce-EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEE
Q psy3862         171 GEMVEELILSGADVIKVGIG-PGSV-CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVI  238 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga-~G~~-~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgv  238 (671)
                      .+.+++|++.|..+|-+--. ++.. ++.++++++|++.        .=||.|-|.++++.++++||+-+
T Consensus        19 ~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~--------vGAGTVl~~e~a~~ai~aGA~Fi   80 (201)
T PRK06015         19 VPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAI--------VGAGTILNAKQFEDAAKAGSRFI   80 (201)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCE--------EeeEeCcCHHHHHHHHHcCCCEE
Confidence            46788999999999966331 1110 1222222222211        13999999999999999999988

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.60  E-value=0.36  Score=49.74  Aligned_cols=101  Identities=12%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             HHHHHHHHhCCCceEE--EeeccCCCChHHHHHHHHH----HHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc
Q psy3862         120 AGLKEILAALPEIEYI--CLDVANGYTQTFVDFVRRI----REMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS  193 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~I--vld~a~G~~~~~~~~ik~l----r~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~  193 (671)
                      +-++.+++.  +...+  +++.     .+..+.++++    ++.||+..+=+|.|.|.+++++++++|+++++-   ++.
T Consensus        31 ~~~~al~~g--Gi~~iEiT~~t-----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs---P~~  100 (222)
T PRK07114         31 KVIKACYDG--GARVFEFTNRG-----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT---PLF  100 (222)
T ss_pred             HHHHHHHHC--CCCEEEEeCCC-----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC---CCC
Confidence            344556665  55543  3332     2234444444    356887666677899999999999999999953   332


Q ss_pred             eEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         194 VCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       194 ~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                                 +-.+++...  .+|.-=|+.|..-+.+++++||+.||+=
T Consensus       101 -----------~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlF  139 (222)
T PRK07114        101 -----------NPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLF  139 (222)
T ss_pred             -----------CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence                       122333332  3566779999999999999999999986

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=95.59  E-value=0.16  Score=51.78  Aligned_cols=110  Identities=23%  Similarity=0.275  Sum_probs=77.6

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.++++- ..++.+++.  +.+.|=+-.   .+....+.|+.+++.||...+=+|.|.+.+++++++++|++++|-   +
T Consensus        21 ~~~~e~a~~~a~Ali~g--Gi~~IEITl---~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs---P   92 (211)
T COG0800          21 GDDVEEALPLAKALIEG--GIPAIEITL---RTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS---P   92 (211)
T ss_pred             eCCHHHHHHHHHHHHHc--CCCeEEEec---CCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC---C
Confidence            3444433 345566776  555543221   145567888988889997666677899999999999999999963   4


Q ss_pred             CceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |..           -.+++.+.  .+|..=||.|.--+..++++|++.+|+=
T Consensus        93 ~~~-----------~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~F  133 (211)
T COG0800          93 GLN-----------PEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFF  133 (211)
T ss_pred             CCC-----------HHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeec
Confidence            321           12233332  3566779999999999999999999986

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=95.58  E-value=0.27  Score=51.89  Aligned_cols=27  Identities=26%  Similarity=0.231  Sum_probs=23.1

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .+++-+..+.-.|+.+.++|+|+|-+.
T Consensus        16 ~i~~~tayD~~sArl~e~aG~d~i~vG   42 (264)
T PRK00311         16 KIVMLTAYDYPFAKLFDEAGVDVILVG   42 (264)
T ss_pred             CEEEEeCCCHHHHHHHHHcCCCEEEEC
Confidence            466678888999999999999999875

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=95.53  E-value=0.2  Score=52.57  Aligned_cols=121  Identities=21%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-ccceee-ecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862         345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL  422 (671)
Q Consensus       345 ~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~  422 (671)
                      ..++...+++.|.=|+|-.-+++|+..+++...++. +..+.. +-.++++++.++.+..-.++.+- +..|..-....+
T Consensus       104 ~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v-s~~G~TG~~~~~  182 (256)
T TIGR00262       104 VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLV-SRAGVTGARNRA  182 (256)
T ss_pred             HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEE-ECCCCCCCcccC
Confidence            357899999999999888888888876666543321 222322 22344577777766544466654 334554321111


Q ss_pred             ccccccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         423 TNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                         .......+..+|++... +++||-+.+.+.++ +...|||+|.||.
T Consensus       183 ---~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS  228 (256)
T TIGR00262       183 ---ASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS  228 (256)
T ss_pred             ---ChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence               11223345555665443 44555567565555 6799999999984

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>KOG3111|consensus

Probab=95.47  E-value=0.086  Score=52.72  Aligned_cols=114  Identities=21%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             HHHHHHHcCCeE-EeecC--CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCC---Ch
Q psy3862          72 MAKHLAKHGLFT-TIHKY--YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGY---TQ  145 (671)
Q Consensus        72 lA~Ala~~gglg-vIh~n--~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~---~~  145 (671)
                      ...-++++|.-. ++|.-  ..+.+..+.+++.- ..--+.+.+|++.++++.+.+.++   -+.+.+++..+|-   .+
T Consensus        79 ~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~G-mk~G~alkPgT~Ve~~~~~~~~~D---~vLvMtVePGFGGQkFme  154 (224)
T KOG3111|consen   79 WVDQMAKAGASLFTFHYEATQKPAELVEKIREKG-MKVGLALKPGTPVEDLEPLAEHVD---MVLVMTVEPGFGGQKFME  154 (224)
T ss_pred             HHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcC-CeeeEEeCCCCcHHHHHHhhcccc---EEEEEEecCCCchhhhHH
Confidence            334577777554 47853  23444555554321 111234567888777665544333   2334455555543   36


Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +.++.++++|+.||+..+.+-...+.+.+....+|||+++|.++
T Consensus       155 ~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGs  198 (224)
T KOG3111|consen  155 DMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGS  198 (224)
T ss_pred             HHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecc
Confidence            67788999999999887744444567888889999999999855

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=95.42  E-value=0.39  Score=49.02  Aligned_cols=66  Identities=23%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.+.|+|.+.+-.-.|..     ....+++..+..+.   .+|  ++|||.+.+.++.++++|||++-+|
T Consensus        33 ~~~a~~~~~~g~~~i~v~dld~~~-----~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg  103 (233)
T PRK00748         33 VAQAKAWEDQGAKWLHLVDLDGAK-----AGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIG  103 (233)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCccc-----cCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence            477888889999887553212210     01113343443331   246  7999999999999999999998777

>PRK02227 hypothetical protein; Provisional

Probab=95.41  E-value=0.098  Score=54.18  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=56.4

Q ss_pred             CCCCCCHHHHHHHHHcCCeEEEc-----------cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEE
Q psy3862         340 MDTVGTFEMAKHLAKHGLFTTIH-----------KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVML  408 (671)
Q Consensus       340 MDtV~~~~mA~~la~~Gglgvih-----------r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~i  408 (671)
                      .+++-.+++-...++.|.=+++-           .|++++++.+|+.+..+.--..+-+|....+|+..|...+.|++=+
T Consensus       128 ~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L~~l~pD~lGf  207 (238)
T PRK02227        128 VGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPALKRLGPDILGV  207 (238)
T ss_pred             ccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHHHhcCCCEEEe
Confidence            45677788888888899888876           6999999999998754422233445666789999999999999998


Q ss_pred             cccc
Q psy3862         409 GGMF  412 (671)
Q Consensus       409 d~~a  412 (671)
                      .|-.
T Consensus       208 Rgav  211 (238)
T PRK02227        208 RGAV  211 (238)
T ss_pred             chhc
Confidence            8433

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=95.37  E-value=0.64  Score=48.86  Aligned_cols=78  Identities=21%  Similarity=0.155  Sum_probs=44.8

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEECcC-----CCceEEEEec-ccCCcchhhhhcc---ccC-----Cc-ccccc---
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVGIG-----PGSVCTTRLK-NKTSDFFLIQFYS---CIP-----QA-GNVVT---  223 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga-----~G~~~~t~v~-~~~~~~~~i~~i~---~~p-----~a-GnV~t---  223 (671)
                      .+++-+..+.-.|+.+.++|+|+|-+..+     +|+.-+..+. ++  -++-...+.   ..|     .- |+..+   
T Consensus        13 ~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~e--m~~~~~~V~r~~~~p~viaD~~fg~y~~~~~   90 (254)
T cd06557          13 KIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDE--MIYHTRAVRRGAPRALVVADMPFGSYQTSPE   90 (254)
T ss_pred             cEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHH--HHHHHHHHHhcCCCCeEEEeCCCCcccCCHH
Confidence            46667888899999999999999986532     3432000000 00  000000110   123     12 66666   


Q ss_pred             --HHHHHHHHH-cCCCEEEEc
Q psy3862         224 --GEMVEELIL-SGADVIKVG  241 (671)
Q Consensus       224 --~~~a~~li~-aGAdgvkVG  241 (671)
                        .+.+..+++ +||+||++=
T Consensus        91 ~av~~a~r~~~~aGa~aVkiE  111 (254)
T cd06557          91 QALRNAARLMKEAGADAVKLE  111 (254)
T ss_pred             HHHHHHHHHHHHhCCeEEEEc
Confidence              555677887 999999994

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=95.29  E-value=0.25  Score=51.46  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|.+-.-..     .......++.++..+.   .+|  +.|||-+.+.++.++.+||+++-+|
T Consensus        33 ~~~a~~~~~~G~~~i~i~dl~~-----~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig  103 (253)
T PRK02083         33 VELAKRYNEEGADELVFLDITA-----SSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSIN  103 (253)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCc-----ccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            4888888999999885522110     0001112333333332   256  7999999999999999999999888

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=95.18  E-value=0.2  Score=51.66  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=55.9

Q ss_pred             CCCCCHHHHHHHHHcCCeEEEc-----------cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862         341 DTVGTFEMAKHLAKHGLFTTIH-----------KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       341 DtV~~~~mA~~la~~Gglgvih-----------r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id  409 (671)
                      +++-.+++-...++.|.-+++-           .|++++++.+|+....+.--.++-+|....+|+..|...+.|++=+.
T Consensus       129 ~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l~pD~lGfR  208 (235)
T PF04476_consen  129 GSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRLGPDILGFR  208 (235)
T ss_pred             cCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhcCCCEEEec
Confidence            4556777777788888887775           69999999999987554333445567778899999999999999998


Q ss_pred             ccc
Q psy3862         410 GMF  412 (671)
Q Consensus       410 ~~a  412 (671)
                      |-.
T Consensus       209 GAv  211 (235)
T PF04476_consen  209 GAV  211 (235)
T ss_pred             hhh
Confidence            544

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=95.18  E-value=0.14  Score=56.07  Aligned_cols=102  Identities=16%  Similarity=0.056  Sum_probs=55.0

Q ss_pred             HHHHHHHHCCCcEEEECcCCCce-EEEEecccCCcchhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSV-CTTRLKNKTSDFFLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV  247 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~-~~t~v~~~~~~~~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~  247 (671)
                      +-++.|.++|+|.|-+...- +. .+....+   .-.+++.+...+   ...-+...+++..++++|++.|.+.+...-.
T Consensus        72 ~ia~~L~~~GV~~IEvGs~v-spk~vPqmad---~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~  147 (347)
T PLN02746         72 ELIQRLVSSGLPVVEATSFV-SPKWVPQLAD---AKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASES  147 (347)
T ss_pred             HHHHHHHHcCCCEEEECCCc-Cccccccccc---HHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHH
Confidence            56778999999999886421 11 0110110   000111111111   1122347899999999999999998733322


Q ss_pred             cccceecccCcchh-hhHHHHHHHhhhcCCcc
Q psy3862         248 CTTRLKTGVGYPQF-SAVLECADAAHGLGGHI  278 (671)
Q Consensus       248 ~~Tr~V~gv~~~~~-~~~~~~~~~~~~~~~~~  278 (671)
                      .. +...+..+.+. .-+.++.+.|+++|.++
T Consensus       148 h~-~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v  178 (347)
T PLN02746        148 FS-KSNINCSIEESLVRYREVALAAKKHSIPV  178 (347)
T ss_pred             HH-HHHhCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence            21 22233334333 33567888888776543

>cd04732 HisA HisA

Probab=95.15  E-value=0.19  Score=51.28  Aligned_cols=121  Identities=21%  Similarity=0.301  Sum_probs=73.9

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-----------------Eec
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-----------------NVV  169 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-----------------~v~  169 (671)
                      |+.+.-|+  .+.+.+++++..  +++.+++....-.   -.+.++++.+.++.-.++..                 ...
T Consensus        75 pv~~~GgI--~~~e~~~~~~~~--Gad~vvigs~~l~---dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~  147 (234)
T cd04732          75 PVQVGGGI--RSLEDIERLLDL--GVSRVIIGTAAVK---NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVS  147 (234)
T ss_pred             CEEEeCCc--CCHHHHHHHHHc--CCCEEEECchHHh---ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCC
Confidence            55554443  456777777776  7888877655321   13344444444543111111                 112


Q ss_pred             cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+.++.+.++|+|.+.+-.  ..|+       ...+++.++..+.   .+|  ++|||.+.+.++.++..||||+-||
T Consensus       148 ~~~~~~~~~~~ga~~iii~~~~~~g~-------~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg  219 (234)
T cd04732         148 LEELAKRFEELGVKAIIYTDISRDGT-------LSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG  219 (234)
T ss_pred             HHHHHHHHHHcCCCEEEEEeecCCCc-------cCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence            34778889999999996632  1111       1113444444442   356  7999999999999999999999998

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.15  E-value=0.11  Score=52.67  Aligned_cols=109  Identities=21%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCC-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEE
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  198 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~  198 (671)
                      +.++.+.++  +++.+++.... .+ ....+.++..+. + ....+ ..+.+.++++.+.+.|+|.+.+.+..++..   
T Consensus        85 ~~v~~~~~~--Gad~v~l~~~~-~~~~~~~~~~~~~~~-~-g~~~~-v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~---  155 (217)
T cd00331          85 YQIYEARAA--GADAVLLIVAA-LDDEQLKELYELARE-L-GMEVL-VEVHDEEELERALALGAKIIGINNRDLKTF---  155 (217)
T ss_pred             HHHHHHHHc--CCCEEEEeecc-CCHHHHHHHHHHHHH-c-CCeEE-EEECCHHHHHHHHHcCCCEEEEeCCCcccc---
Confidence            466677777  88888876442 22 222333333222 2 12222 234578889999999999997754333211   


Q ss_pred             ecccCCcchhhhhc-c----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         199 LKNKTSDFFLIQFY-S----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       199 v~~~~~~~~~i~~i-~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                          .+++..+..+ +    .+|  +.|||.+.+.++.++++||||+-||
T Consensus       156 ----~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivG  201 (217)
T cd00331         156 ----EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIG  201 (217)
T ss_pred             ----CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEEC
Confidence                0111111111 1    234  6899999999999999999999998

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=95.08  E-value=0.21  Score=50.87  Aligned_cols=66  Identities=24%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEE-EEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCT-TRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~-t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +.+.++.+.++|+|+|++|........ ..+      ..+++.+.   .+|..-++.|.+.++.+.++|+|.+.+.
T Consensus        81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~------~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~  150 (219)
T cd04729          81 TIEEVDALAAAGADIIALDATDRPRPDGETL------AELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTT  150 (219)
T ss_pred             CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCH------HHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEcc
Confidence            456899999999999999865431100 000      00111111   1444446788889999999999988553

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.03  E-value=0.27  Score=49.13  Aligned_cols=68  Identities=22%  Similarity=0.212  Sum_probs=41.4

Q ss_pred             ChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         391 SPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +++++.+..++|+|++-+-   ......-.+.++.++..+|.+       +=+-+|| +...++...+++||++|=+|.
T Consensus       114 t~~e~~~A~~~Gadyv~~F---pt~~~~G~~~l~~~~~~~~~i-------pvvaiGG-I~~~n~~~~l~aGa~~vav~s  181 (187)
T PRK07455        114 TPTEIVTAWQAGASCVKVF---PVQAVGGADYIKSLQGPLGHI-------PLIPTGG-VTLENAQAFIQAGAIAVGLSG  181 (187)
T ss_pred             CHHHHHHHHHCCCCEEEEC---cCCcccCHHHHHHHHhhCCCC-------cEEEeCC-CCHHHHHHHHHCCCeEEEEeh
Confidence            4566666778899999873   111111123334344333322       1144788 477888889999999997764

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.00  E-value=0.17  Score=52.20  Aligned_cols=77  Identities=26%  Similarity=0.355  Sum_probs=48.2

Q ss_pred             cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCc--hhHHHHHHcCCcEE
Q psy3862         388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSP--GDVAKAMGAGADFV  465 (671)
Q Consensus       388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t--~~~a~~l~aGAd~V  465 (671)
                      |..++.|+....++|+|++-+=   ...+ .-...++.++.-||.+.    |+   -.|| |..  .++.+.+.+||.+|
T Consensus       118 G~~TpsEi~~A~~~Ga~~vKlF---PA~~-~G~~~ikal~~p~p~i~----~~---ptGG-V~~~~~n~~~yl~aGa~av  185 (222)
T PRK07114        118 GCGSLSEIGYAEELGCEIVKLF---PGSV-YGPGFVKAIKGPMPWTK----IM---PTGG-VEPTEENLKKWFGAGVTCV  185 (222)
T ss_pred             CCCCHHHHHHHHHCCCCEEEEC---cccc-cCHHHHHHHhccCCCCe----EE---eCCC-CCcchhcHHHHHhCCCEEE
Confidence            4456778888889999999875   2221 11344455555555542    12   2567 454  78888999998888


Q ss_pred             EECccccCCccCCCcE
Q psy3862         466 MLGGMFAGHDQSGGEL  481 (671)
Q Consensus       466 ~vG~~g~G~s~ctt~~  481 (671)
                      =+|.     ..++.+.
T Consensus       186 g~Gs-----~L~~~~~  196 (222)
T PRK07114        186 GMGS-----KLIPKEA  196 (222)
T ss_pred             EECh-----hhcCccc
Confidence            5553     5666554

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=94.99  E-value=0.17  Score=53.94  Aligned_cols=122  Identities=24%  Similarity=0.303  Sum_probs=64.4

Q ss_pred             hhhHHHHHHHHHhCCCceEEEeeccC--C-------CChHHH-HHHHHHHH--hCCCceEEEEEecc---HHHHHHHHHC
Q psy3862         116 AKDLAGLKEILAALPEIEYICLDVAN--G-------YTQTFV-DFVRRIRE--MYPKHVIIAGNVVT---GEMVEELILS  180 (671)
Q Consensus       116 ~~d~~rl~~l~~a~~~~d~Ivld~a~--G-------~~~~~~-~~ik~lr~--~~P~~~li~g~v~t---~e~a~~Li~A  180 (671)
                      .+|+.++.+.+++  ++|++-+|.+-  .       ...... +.++.+++  ..|...|+..+...   .+.+..+.+.
T Consensus       111 ~~d~~~~a~~~~~--~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~  188 (295)
T PF01180_consen  111 IEDWAELAKRLEA--GADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAAD  188 (295)
T ss_dssp             HHHHHHHHHHHHH--HCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHhcC--cCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhcc
Confidence            4555555455554  67888777542  1       111222 22333333  24777788876544   3456667788


Q ss_pred             CCcEEEEC----------cCCC-------ce-EE-EEecccCCcchhhhhc----c-ccC--CccccccHHHHHHHHHcC
Q psy3862         181 GADVIKVG----------IGPG-------SV-CT-TRLKNKTSDFFLIQFY----S-CIP--QAGNVVTGEMVEELILSG  234 (671)
Q Consensus       181 GaD~IvVd----------ga~G-------~~-~~-t~v~~~~~~~~~i~~i----~-~~p--~aGnV~t~~~a~~li~aG  234 (671)
                      |+|.|+.-          ....       .. .+ ..+++.  .+..+-.+    . .+|  ..|||-|++.+...+.+|
T Consensus       189 g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~--aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aG  266 (295)
T PF01180_consen  189 GADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPI--ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAG  266 (295)
T ss_dssp             TECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHH--HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHT
T ss_pred             ceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhH--HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhC
Confidence            99999731          1100       00 00 001000  01111111    1 245  599999999999999999


Q ss_pred             CCEEEEc
Q psy3862         235 ADVIKVG  241 (671)
Q Consensus       235 AdgvkVG  241 (671)
                      |+.|+|+
T Consensus       267 A~~Vqv~  273 (295)
T PF01180_consen  267 ASAVQVC  273 (295)
T ss_dssp             ESEEEES
T ss_pred             CCHheec
Confidence            9999998

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=94.97  E-value=0.63  Score=48.35  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=66.4

Q ss_pred             CCCHHHHHHHHHcCCeEEEcc---CCCHHHHHHHHhcCccc-ccceee-ecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862         343 VGTFEMAKHLAKHGLFTTIHK---YYTLEEWKAFAVQNPDV-IKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ  417 (671)
Q Consensus       343 V~~~~mA~~la~~Gglgvihr---~~~~e~~~~~v~~~~~~-~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~  417 (671)
                      ....+++..+.+.|.-+++-.   +.+.|+..+++...++. ++.+.. .-.++.+++..+++..-.++++ ++-.|...
T Consensus        88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~  166 (244)
T PRK13125         88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGV  166 (244)
T ss_pred             hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCC
Confidence            355667999999998888755   33344444444332221 222222 2223457778888877777766 44444432


Q ss_pred             cccccccccccccccccccccccCc--e-eeccccCchhH-HHHHHcCCcEEEECc
Q psy3862         418 SGGELTNIEYMFFPLVGDMNSYLGG--V-VDGGCTSPGDV-AKAMGAGADFVMLGG  469 (671)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-i~gG~v~t~~~-a~~l~aGAd~V~vG~  469 (671)
                      .   +   .......+..+|++.++  + ++|| +.+.+. .+++++|||++.||.
T Consensus       167 ~---~---~~~~~~~i~~lr~~~~~~~i~v~gG-I~~~e~i~~~~~~gaD~vvvGS  215 (244)
T PRK13125        167 P---L---PVSVERNIKRVRNLVGNKYLVVGFG-LDSPEDARDALSAGADGVVVGT  215 (244)
T ss_pred             C---c---hHHHHHHHHHHHHhcCCCCEEEeCC-cCCHHHHHHHHHcCCCEEEECH
Confidence            1   1   11222234455665532  3 4555 545544 446799999999984

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.88  E-value=0.35  Score=49.70  Aligned_cols=121  Identities=21%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E-----e-----------c
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N-----V-----------V  169 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~-----v-----------~  169 (671)
                      |+.++-|+.  +.+.++.++.+  +++.+++.....   .-.+.++++.+.|+...++.+ .     +           .
T Consensus        78 ~l~v~GGi~--~~~~~~~~~~~--Ga~~v~iGs~~~---~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~  150 (241)
T PRK13585         78 PVQLGGGIR--SAEDAASLLDL--GVDRVILGTAAV---ENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYT  150 (241)
T ss_pred             cEEEcCCcC--CHHHHHHHHHc--CCCEEEEChHHh---hChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCC
Confidence            455544553  55667777776  788888764421   112345555555643222221 1     0           2


Q ss_pred             cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+.++.+.++|+|.|.+-.  ..|+.       ..+++.++..+.   .+|  ++|||-+.+.+..+..+||+|+-||
T Consensus       151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~-------~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg  222 (241)
T PRK13585        151 PVEAAKRFEELGAGSILFTNVDVEGLL-------EGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG  222 (241)
T ss_pred             HHHHHHHHHHcCCCEEEEEeecCCCCc-------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence            35778889999999987622  12211       112333333331   356  7999999999999999999999998

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.83  E-value=0.6  Score=48.39  Aligned_cols=168  Identities=16%  Similarity=0.173  Sum_probs=92.5

Q ss_pred             HHHHHHHHH-CCCcEEE---ECcC-CCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862         171 GEMVEELIL-SGADVIK---VGIG-PGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       171 ~e~a~~Li~-AGaD~Iv---Vdga-~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      .+.|+.+.+ .|+|-+-   +|++ .|+.         .++.++.-+.   .+|  ++|||-+.+.++.++.+||+-+-+
T Consensus        34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~---------~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvi  104 (234)
T PRK13587         34 EESIAYYSQFECVNRIHIVDLIGAKAQHA---------REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIV  104 (234)
T ss_pred             HHHHHHHHhccCCCEEEEEECcccccCCc---------chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEE
Confidence            378888888 6888662   2333 2221         2333333332   246  799999999999999999999977


Q ss_pred             cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862         241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~  320 (671)
                      |           -..+-.|+  .+.+++   +..|-+|+.             ++|.++=.+.++-.+-.          
T Consensus       105 g-----------t~a~~~~~--~l~~~~---~~fg~~ivv-------------slD~~~g~v~~~gw~~~----------  145 (234)
T PRK13587        105 G-----------TKGIQDTD--WLKEMA---HTFPGRIYL-------------SVDAYGEDIKVNGWEED----------  145 (234)
T ss_pred             C-----------chHhcCHH--HHHHHH---HHcCCCEEE-------------EEEeeCCEEEecCCccc----------
Confidence            7           22233443  233333   333333333             11111101111000000          


Q ss_pred             eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC---------CHHHHHHHHhcCcccccceeeeccc-
Q psy3862         321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY---------TLEEWKAFAVQNPDVIKHVADGGCT-  390 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~---------~~e~~~~~v~~~~~~~~~v~~~~~~-  390 (671)
                                          -...-.+++..+.+.|.=.+|.-..         +.+ ..+.+.+..+ ++ +-++|++ 
T Consensus       146 --------------------~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~-li~~l~~~~~-ip-vi~~GGi~  202 (234)
T PRK13587        146 --------------------TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE-LTGQLVKATT-IP-VIASGGIR  202 (234)
T ss_pred             --------------------CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH-HHHHHHHhCC-CC-EEEeCCCC
Confidence                                0112367888888888656665333         233 3333333221 23 4445555 


Q ss_pred             ChhhHHHHHHcCCcEEEEc
Q psy3862         391 SPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       391 ~~~~~~~l~~aG~d~i~id  409 (671)
                      +++|+.++.++|+|-+++-
T Consensus       203 s~edi~~l~~~G~~~vivG  221 (234)
T PRK13587        203 HQQDIQRLASLNVHAAIIG  221 (234)
T ss_pred             CHHHHHHHHHcCCCEEEEh
Confidence            6799999999999999986

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=94.79  E-value=0.17  Score=52.48  Aligned_cols=28  Identities=18%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEE
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTI  361 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvi  361 (671)
                      ||+=|||=.+|+.+++.++++++|+++|
T Consensus         1 ~~~lApMag~td~~f~~~~~~~~g~~~~   28 (233)
T cd02911           1 PVALASMAGITDGDFCRKRADHAGLVFL   28 (233)
T ss_pred             CceeeecCCCcCHHHHHhhCccCCEEEE
Confidence            7888999999999999999999999988

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=94.75  E-value=0.4  Score=50.35  Aligned_cols=130  Identities=20%  Similarity=0.226  Sum_probs=76.4

Q ss_pred             cCceEEecCCCcccc------HHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcc-cccce-EEecCCChhhHHHHHHHH
Q psy3862          55 QGVPIIAANMDTVGT------FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHV-AVSSGISAKDLAGLKEIL  126 (671)
Q Consensus        55 l~~Piv~a~M~~vt~------~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~-~~~~~-~v~~G~~~~d~~rl~~l~  126 (671)
                      .++|++  -|.+...      .+....++++|.-|+|=.-.++|+..++...... -..++ .+++..+   .+|+..+.
T Consensus        86 ~~~plv--~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~---~eri~~i~  160 (256)
T TIGR00262        86 PNIPIG--LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD---DERLKQIA  160 (256)
T ss_pred             CCCCEE--EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC---HHHHHHHH
Confidence            467877  5666433      6778888888888874446677765444422111 11222 2333333   45776776


Q ss_pred             HhCCCceE-EEeeccCC----CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         127 AALPEIEY-ICLDVANG----YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       127 ~a~~~~d~-Ivld~a~G----~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ...++-.. +.+....|    ......+.++++|+..+.-..+.+.+.+++.++.+.++|||.+++.+
T Consensus       161 ~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS  228 (256)
T TIGR00262       161 EKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS  228 (256)
T ss_pred             HhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence            65332222 23221112    23457788888877543323344467789999999999999998843

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=94.75  E-value=0.71  Score=48.22  Aligned_cols=65  Identities=23%  Similarity=0.337  Sum_probs=43.9

Q ss_pred             HHHHHHHHHCCCcEEEE-CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKV-GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvV-dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.+.|+|.|.+ |....      .....+++.++..+.   .+|  ++|||-+.+.++.++.+||+++-||
T Consensus        33 ~~~a~~~~~~G~~~l~v~Dl~~~------~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg  103 (254)
T TIGR00735        33 VELAQRYDEEGADELVFLDITAS------SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN  103 (254)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCcc------cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            47888888999987744 22110      001112333333331   246  7999999999999999999999888

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.60  E-value=0.89  Score=46.72  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.+.|+|.+.+---.+.     ..........+..+ .  .+|  +.|||-|.+.++.++++|||+|-+|
T Consensus        35 ~e~a~~~~~~G~~~l~i~dl~~~-----~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG  105 (241)
T PRK13585         35 VEVAKRWVDAGAETLHLVDLDGA-----FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILG  105 (241)
T ss_pred             HHHHHHHHHcCCCEEEEEechhh-----hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence            47888899999998843111100     00001122222222 2  245  7999999999999999999999887

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=94.49  E-value=0.6  Score=50.43  Aligned_cols=125  Identities=25%  Similarity=0.342  Sum_probs=71.8

Q ss_pred             hhhHHHHHHHHH-hCCCceEEEeeccCCC----------ChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHHHHCC
Q psy3862         116 AKDLAGLKEILA-ALPEIEYICLDVANGY----------TQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEELILSG  181 (671)
Q Consensus       116 ~~d~~rl~~l~~-a~~~~d~Ivld~a~G~----------~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~Li~AG  181 (671)
                      .++++.....++ +.+ ++++.++.+--|          ++.+-+.++.+++.  .|...|++-++. ..+-|+.+.++|
T Consensus       108 ~~~~~d~~~~~~~~~~-ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g  186 (310)
T COG0167         108 EEAWADYARLLEEAGD-ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAG  186 (310)
T ss_pred             HHHHHHHHHHHHhcCC-CCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcC
Confidence            344544444444 333 788877754211          12233334444432  588888887553 357889999999


Q ss_pred             CcEEEECc--CCCc-eEEEE----ecccC-----C-----cchhhhh-cc----ccC--CccccccHHHHHHHHHcCCCE
Q psy3862         182 ADVIKVGI--GPGS-VCTTR----LKNKT-----S-----DFFLIQF-YS----CIP--QAGNVVTGEMVEELILSGADV  237 (671)
Q Consensus       182 aD~IvVdg--a~G~-~~~t~----v~~~~-----~-----~~~~i~~-i~----~~p--~aGnV~t~~~a~~li~aGAdg  237 (671)
                      +|.|++--  -.+. +....    .+...     +     .+..+.. .+    .+|  -.|||-|.+.|..-|.|||+.
T Consensus       187 ~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~  266 (310)
T COG0167         187 ADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASA  266 (310)
T ss_pred             CcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCch
Confidence            99997622  1111 10000    00000     0     1111111 11    255  499999999999999999999


Q ss_pred             EEEc
Q psy3862         238 IKVG  241 (671)
Q Consensus       238 vkVG  241 (671)
                      |+||
T Consensus       267 vQv~  270 (310)
T COG0167         267 VQVG  270 (310)
T ss_pred             heee
Confidence            9998

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=94.48  E-value=0.03  Score=63.21  Aligned_cols=107  Identities=25%  Similarity=0.292  Sum_probs=62.5

Q ss_pred             ccCCCHHHHHHHHhcCccccc----ceeeecccChhhHHH-HHHcCCcEEEEccccccccccccccccc----------c
Q psy3862         362 HKYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELTNI----------E  426 (671)
Q Consensus       362 hr~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~-l~~aG~d~i~id~~a~gh~~~~~~~~~~----------~  426 (671)
                      |-.||+||++.+|.+++++-+    .++-+....-+.++. ..+|+||+|+|||.--|---++...++.          .
T Consensus       282 HDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae  361 (485)
T COG0069         282 HDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAE  361 (485)
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHH
Confidence            457899999999988766421    222233334466666 4789999999997432221111111100          0


Q ss_pred             ccccccccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         427 YMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       427 ~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                      -.+.=....+|..+.=.++||.....++++++..|||.|..|
T Consensus       362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~g  403 (485)
T COG0069         362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFG  403 (485)
T ss_pred             HHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhc
Confidence            000001111222222267899999999999999999998655

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.43  E-value=0.07  Score=57.01  Aligned_cols=85  Identities=25%  Similarity=0.348  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccC--Ccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIP--QAGNV  221 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p--~aGnV  221 (671)
                      +.+.++.+|+..|...++.-.+.+.+++..++++|+|+|-+|--.-..   +...+++..++         +|  +.|||
T Consensus       182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~---------i~leAsGGI  252 (288)
T PRK07428        182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPR---------VKIEASGNI  252 (288)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCC---------eEEEEECCC
Confidence            556677777777755677778889999999999999999988311100   01111111121         23  79999


Q ss_pred             ccHHHHHHHHHcCCCEEEEc
Q psy3862         222 VTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       222 ~t~~~a~~li~aGAdgvkVG  241 (671)
                       |.+.+.++.++|+|+|=+|
T Consensus       253 -t~~ni~~ya~tGvD~Isvg  271 (288)
T PRK07428        253 -TLETIRAVAETGVDYISSS  271 (288)
T ss_pred             -CHHHHHHHHHcCCCEEEEc
Confidence             8999999999999999777

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=94.43  E-value=1  Score=48.86  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=25.3

Q ss_pred             CchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         450 SPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       450 ~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      ++.+.++.+-.-.++..+|| |+| .-|.+++.
T Consensus       204 Vp~~la~~It~~l~IPtIGI-GAG-~~cDGQVL  234 (332)
T PLN02424        204 VPAPVAAAITSALQIPTIGI-GAG-PFCSGQVL  234 (332)
T ss_pred             CcHHHHHHHHHhCCCCEEee-cCC-CCCCceeE
Confidence            56668888877789999996 999 88998864

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=94.24  E-value=1.2  Score=45.93  Aligned_cols=64  Identities=20%  Similarity=0.293  Sum_probs=43.6

Q ss_pred             HHHHHHHHHCCCcEEEE-CcC-CCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKV-GIG-PGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvV-dga-~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|.+ |.. .|..       ..+++.++..+.   .+|  +.|||.+.+.++.++..|||++-+|
T Consensus        30 ~~~a~~~~~~G~~~i~i~d~~~~~~~-------~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig  100 (243)
T cd04731          30 VELAKRYNEQGADELVFLDITASSEG-------RETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN  100 (243)
T ss_pred             HHHHHHHHHCCCCEEEEEcCCccccc-------CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence            47888999999994432 221 2211       112333443342   246  7999999999999999999999887

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=94.23  E-value=0.19  Score=52.22  Aligned_cols=66  Identities=15%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             eccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862         168 VVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      ..+...+++|.++|+|+|-.-+   +.|..    +    .+.+.+..+.   .+|  +.|||.|.+.++.++++|||||-
T Consensus       131 ~dd~~~ar~l~~~G~~~vmPlg~pIGsg~G----i----~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVl  202 (248)
T cd04728         131 TDDPVLAKRLEDAGCAAVMPLGSPIGSGQG----L----LNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVL  202 (248)
T ss_pred             CCCHHHHHHHHHcCCCEeCCCCcCCCCCCC----C----CCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            4678999999999999994422   22211    1    1122223332   245  79999999999999999999998


Q ss_pred             Ec
Q psy3862         240 VG  241 (671)
Q Consensus       240 VG  241 (671)
                      ||
T Consensus       203 V~  204 (248)
T cd04728         203 LN  204 (248)
T ss_pred             EC
Confidence            88

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK00208 thiG thiazole synthase; Reviewed

Probab=94.06  E-value=0.21  Score=51.99  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             eccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862         168 VVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      ..+...+++|.++|+|+|---+   +.|..    +.    +.+.++.+.   .+|  +.|||.|.+.+..++++|||||-
T Consensus       131 ~~d~~~ak~l~~~G~~~vmPlg~pIGsg~g----i~----~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVl  202 (250)
T PRK00208        131 TDDPVLAKRLEEAGCAAVMPLGAPIGSGLG----LL----NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVL  202 (250)
T ss_pred             CCCHHHHHHHHHcCCCEeCCCCcCCCCCCC----CC----CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            4678999999999999994422   22211    11    112233332   245  79999999999999999999998


Q ss_pred             Ec
Q psy3862         240 VG  241 (671)
Q Consensus       240 VG  241 (671)
                      ||
T Consensus       203 V~  204 (250)
T PRK00208        203 LN  204 (250)
T ss_pred             EC
Confidence            88

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=93.98  E-value=1.1  Score=47.77  Aligned_cols=61  Identities=16%  Similarity=0.054  Sum_probs=41.2

Q ss_pred             eccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEE
Q psy3862         168 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      +.....++.|.++|||+|  |.      +.++.   |.-.++..++   ..|..-++.|-+-++..++.|||-|+
T Consensus        76 igh~~Ea~~L~~~GvDiI--De------Te~lr---Pade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~  139 (287)
T TIGR00343        76 IGHFVEAQILEALGVDYI--DE------SEVLT---PADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIR  139 (287)
T ss_pred             ccHHHHHHHHHHcCCCEE--Ec------cCCCC---cHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEe
Confidence            344788999999999999  31      11111   2111111222   35777889999999999999999884

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=93.92  E-value=0.56  Score=47.90  Aligned_cols=122  Identities=20%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             cceEEecCCChhhHHHHHHHHHhCCCceEEEeecc-CCCChHHHHHHHHHHHhCCCceEEE-----EE-----------e
Q psy3862         106 KHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA-NGYTQTFVDFVRRIREMYPKHVIIA-----GN-----------V  168 (671)
Q Consensus       106 ~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a-~G~~~~~~~~ik~lr~~~P~~~li~-----g~-----------v  168 (671)
                      .|+.++-|+  .+.+.++.+...  +++.+++... ...+..+.+..+...   +...++.     +.           .
T Consensus        73 ~pi~~ggGI--~~~ed~~~~~~~--Ga~~vvlgs~~l~d~~~~~~~~~~~g---~~~i~~sid~~~~~v~~~g~~~~~~~  145 (230)
T TIGR00007        73 VPVQVGGGI--RSLEDVEKLLDL--GVDRVIIGTAAVENPDLVKELLKEYG---PERIVVSLDARGGEVAVKGWLEKSEV  145 (230)
T ss_pred             CCEEEeCCc--CCHHHHHHHHHc--CCCEEEEChHHhhCHHHHHHHHHHhC---CCcEEEEEEEECCEEEEcCCcccCCC
Confidence            355554444  455666666666  7777766533 222333333343321   1111110     00           1


Q ss_pred             ccHHHHHHHHHCCCcEEEE-Cc-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         169 VTGEMVEELILSGADVIKV-GI-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       169 ~t~e~a~~Li~AGaD~IvV-dg-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+.++.+.+.|+|.+.+ |. ..|.       ...+++.++..+.   .+|  ++|||.+.+.++.++++||||+-||
T Consensus       146 ~~~~~~~~~~~~g~~~ii~~~~~~~g~-------~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig  218 (230)
T TIGR00007       146 SLEELAKRLEELGLEGIIYTDISRDGT-------LSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG  218 (230)
T ss_pred             CHHHHHHHHHhCCCCEEEEEeecCCCC-------cCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence            1246788899999996653 22 1111       0113333333332   356  7999999999999999999999998

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=93.70  E-value=0.96  Score=46.14  Aligned_cols=122  Identities=19%  Similarity=0.287  Sum_probs=70.4

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEE----------------ecc
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN----------------VVT  170 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~----------------v~t  170 (671)
                      |+.++-|+  .+.+.++.++..  +++.+++..+.-.   -.+.++++.+.||....+.=.                ...
T Consensus        76 pv~~~GGI--~~~ed~~~~~~~--Ga~~vilg~~~l~---~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~  148 (233)
T PRK00748         76 PVQVGGGI--RSLETVEALLDA--GVSRVIIGTAAVK---NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTA  148 (233)
T ss_pred             CEEEcCCc--CCHHHHHHHHHc--CCCEEEECchHHh---CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCH
Confidence            55554444  356666677666  6777777644211   122344443344432111101                012


Q ss_pred             HHHHHHHHHCCCcEEEEC-c-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEcc
Q psy3862         171 GEMVEELILSGADVIKVG-I-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVGI  242 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVd-g-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG~  242 (671)
                      .+.++.+.+.|+|.|.+- . ..|       ....+++.++..+.   .+|  ++|||.|.+.++.+++.| |||+-||-
T Consensus       149 ~e~~~~~~~~g~~~ii~~~~~~~g-------~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~  221 (233)
T PRK00748        149 EDLAKRFEDAGVKAIIYTDISRDG-------TLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGR  221 (233)
T ss_pred             HHHHHHHHhcCCCEEEEeeecCcC-------CcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence            577888999999965442 1 111       11123444444442   245  799999999999999998 99999993

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=93.52  E-value=1.4  Score=45.70  Aligned_cols=62  Identities=19%  Similarity=0.208  Sum_probs=41.8

Q ss_pred             HHHHHHHHHCCCcEE-EEC--cCCCceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVI-KVG--IGPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~I-vVd--ga~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+.+.+.|+|-| ++|  ++.|+.         +++.++.-+ .  .+|  ++|||-+.+.++.++.+||+-+-+|
T Consensus        35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~---------~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviG  104 (241)
T PRK14024         35 LDAALAWQRDGAEWIHLVDLDAAFGRG---------SNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIG  104 (241)
T ss_pred             HHHHHHHHHCCCCEEEEEeccccCCCC---------ccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence            478888889999854 333  333321         233333333 2  256  7999999999999999999965444

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=93.44  E-value=0.88  Score=47.44  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEECcCCCce----EEE-E---------ecccCCcchhhhhccccCCc-ccc--ccH
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSV----CTT-R---------LKNKTSDFFLIQFYSCIPQA-GNV--VTG  224 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~----~~t-~---------v~~~~~~~~~i~~i~~~p~a-GnV--~t~  224 (671)
                      .+++-++.+.-.|+.+.++|+|+|-+.++.+..    ..+ .         ++......+.++++.++|-+ |+-  -..
T Consensus        13 ~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~   92 (240)
T cd06556          13 RFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAF   92 (240)
T ss_pred             eEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHH
Confidence            466667888899999999999999998843321    000 0         00000001111223344522 332  345


Q ss_pred             HHHHHHHHcCCCEEEEc
Q psy3862         225 EMVEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG  241 (671)
                      +.++.++++||+||++=
T Consensus        93 ~~~~~l~~aGa~gv~iE  109 (240)
T cd06556          93 ELAKTFMRAGAAGVKIE  109 (240)
T ss_pred             HHHHHHHHcCCcEEEEc
Confidence            66899999999999994

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=93.36  E-value=0.1  Score=53.02  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             HHHHHHHHcCCeEEEcc---CCCHHHHHHHHhc-CcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862         347 EMAKHLAKHGLFTTIHK---YYTLEEWKAFAVQ-NPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL  422 (671)
Q Consensus       347 ~mA~~la~~Gglgvihr---~~~~e~~~~~v~~-~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~  422 (671)
                      +++.+|. .||+.+|--   .....+..+.+++ .|+  -.+.+..+.+.++++.++++|++||+=-    +.+..+++.
T Consensus        24 ~~~~al~-~~Gi~~iEit~~t~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~aGA~FivsP----~~~~~v~~~   96 (204)
T TIGR01182        24 PLAKALI-EGGLRVLEVTLRTPVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVDAGAQFIVSP----GLTPELAKH   96 (204)
T ss_pred             HHHHHHH-HcCCCEEEEeCCCccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHHcCCCEEECC----CCCHHHHHH
Confidence            4444544 356666653   3333333444432 233  2355556668899999999999999833    222222222


Q ss_pred             ccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862         423 TNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG  473 (671)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G  473 (671)
                      -             +++= -.+.-|+..+.|+.+++++|||.||+   +|.
T Consensus        97 ~-------------~~~~-i~~iPG~~TptEi~~A~~~Ga~~vKl---FPA  130 (204)
T TIGR01182        97 A-------------QDHG-IPIIPGVATPSEIMLALELGITALKL---FPA  130 (204)
T ss_pred             H-------------HHcC-CcEECCCCCHHHHHHHHHCCCCEEEE---CCc
Confidence            1             1110 11234778999999999999999998   676

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=93.31  E-value=1.6  Score=45.02  Aligned_cols=62  Identities=16%  Similarity=0.099  Sum_probs=43.4

Q ss_pred             HHHHHHHHHCCCcEEEE---CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKV---GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvV---dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+.+.+.|+|-+-+   |++.|+         -+++.++.-+.   .+|  ++|||-+.+.++.++.+||+-+-+|
T Consensus        38 ~~~a~~~~~~g~~~l~i~DLd~~~~~---------~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viig  107 (233)
T cd04723          38 LDVARAYKELGFRGLYIADLDAIMGR---------GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVG  107 (233)
T ss_pred             HHHHHHHHHCCCCEEEEEeCccccCC---------CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEc
Confidence            47889999999987632   222222         12333443332   246  7999999999999999999988777

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=93.24  E-value=1.6  Score=46.35  Aligned_cols=59  Identities=17%  Similarity=0.022  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEE
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      ....++.|.++|||+|  |   .   +.+.+   |.-.++..++   ..|.--++.|.+-+++++++|||-|+
T Consensus        76 ~~~Ea~~L~eaGvDiI--D---a---T~r~r---P~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~  137 (283)
T cd04727          76 HFVEAQILEALGVDMI--D---E---SEVLT---PADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIR  137 (283)
T ss_pred             HHHHHHHHHHcCCCEE--e---c---cCCCC---cHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEE
Confidence            3688999999999999  3   1   11111   2112233332   25678889999999999999999873

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=93.21  E-value=0.94  Score=46.38  Aligned_cols=122  Identities=20%  Similarity=0.274  Sum_probs=73.1

Q ss_pred             cceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E-----------------
Q psy3862         106 KHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N-----------------  167 (671)
Q Consensus       106 ~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~-----------------  167 (671)
                      .|+.++-|+  +..+.+.++...  +++.+++..+-   ..-.+.++++.+.|+...++.. .                 
T Consensus        75 ~pv~~~ggi--~~~~d~~~~~~~--G~~~vilg~~~---l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~  147 (232)
T TIGR03572        75 MPLTVGGGI--RSLEDAKKLLSL--GADKVSINTAA---LENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNG  147 (232)
T ss_pred             CCEEEECCC--CCHHHHHHHHHc--CCCEEEEChhH---hcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCC
Confidence            355554444  345556666665  67777776442   1112455555555643322211 0                 


Q ss_pred             -----eccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHH-HHHcC
Q psy3862         168 -----VVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEE-LILSG  234 (671)
Q Consensus       168 -----v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~-li~aG  234 (671)
                           ....+.++.+.++|+|.|.+.+  ..|+       ...+++..+..+.   .+|  ++|||.+.+.++. +..+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-------~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~g  220 (232)
T TIGR03572       148 RRATGRDPVEWAREAEQLGAGEILLNSIDRDGT-------MKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAG  220 (232)
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC-------cCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcC
Confidence                 0124778999999999998865  2221       1113343433332   356  7999999999999 88899


Q ss_pred             CCEEEEc
Q psy3862         235 ADVIKVG  241 (671)
Q Consensus       235 AdgvkVG  241 (671)
                      ||||-||
T Consensus       221 adgV~vg  227 (232)
T TIGR03572       221 ASAVAAA  227 (232)
T ss_pred             CCEEEEe
Confidence            9999998

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=93.06  E-value=1.3  Score=46.05  Aligned_cols=120  Identities=16%  Similarity=0.096  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-cccee-eecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862         345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVA-DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL  422 (671)
Q Consensus       345 ~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~-~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~  422 (671)
                      ..++...+++.|.=|++---.++|+...++...++. ++.+. .+-.++++++..+.+...|++.+-++.-++..+. ..
T Consensus        93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~-~~  171 (242)
T cd04724          93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGART-EL  171 (242)
T ss_pred             HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCcc-CC
Confidence            367899999999988887555667655555443321 22222 2223445778888876777776652222221111 00


Q ss_pred             ccccccccccccccccccCc-eeeccccCch-hHHHHHHcCCcEEEECc
Q psy3862         423 TNIEYMFFPLVGDMNSYLGG-VVDGGCTSPG-DVAKAMGAGADFVMLGG  469 (671)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~-~~a~~l~aGAd~V~vG~  469 (671)
                         .......+..+|++..- +++||-+.+. ++.++..+ ||++.||.
T Consensus       172 ---~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS  216 (242)
T cd04724         172 ---PDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS  216 (242)
T ss_pred             ---ChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence               01111234445555322 4445546767 55556788 99999984

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=93.02  E-value=1.5  Score=46.32  Aligned_cols=127  Identities=19%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceE-EecCCChhhHHHHHHHH
Q psy3862          55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVA-VSSGISAKDLAGLKEIL  126 (671)
Q Consensus        55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~-v~~G~~~~d~~rl~~l~  126 (671)
                      .++|++  =|++..      ..+.....+++|-=|+|=.-.++||..++..... .-+.++. +++..+   .+|++.+.
T Consensus        90 ~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~---~eri~~i~  164 (263)
T CHL00200         90 IKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS---KSRIQKIA  164 (263)
T ss_pred             CCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHH
Confidence            567977  587743      3567776788887798666888888655543211 1122332 333333   45777776


Q ss_pred             HhCCCceEEEeeccCCC-------ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         127 AALPEIEYICLDVANGY-------TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       127 ~a~~~~d~Ivld~a~G~-------~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +...+  ++.+-...|.       ...+.+.++++|+.. +..+++| .|.+++.++.+.++|||.+++++
T Consensus       165 ~~a~g--FIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS  232 (263)
T CHL00200        165 RAAPG--CIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGS  232 (263)
T ss_pred             HhCCC--cEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence            65322  3322112222       355667777777643 3334445 67889999999999999999854

>PLN02591 tryptophan synthase

Probab=92.95  E-value=1.5  Score=46.12  Aligned_cols=129  Identities=17%  Similarity=0.237  Sum_probs=79.5

Q ss_pred             cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceEE-ecCCChhhHHHHHHHH
Q psy3862          55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVAV-SSGISAKDLAGLKEIL  126 (671)
Q Consensus        55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~v-~~G~~~~d~~rl~~l~  126 (671)
                      .++|++  =|++..      ..++...++++|--|+|=.-+++||..++..+.. .-+.++.+ ++..+   .+|++.+.
T Consensus        77 ~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~---~~ri~~ia  151 (250)
T PLN02591         77 LSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP---TERMKAIA  151 (250)
T ss_pred             CCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHH
Confidence            567977  577743      3567776777877798777889988766653321 11223332 22222   45777776


Q ss_pred             HhCCCceE-EEeeccCC----CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         127 AALPEIEY-ICLDVANG----YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       127 ~a~~~~d~-Ivld~a~G----~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +..++--. +......|    .+....+.++++|+ +++..+++| .+.++++++++.+.|||.++|.+
T Consensus       152 ~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS  219 (250)
T PLN02591        152 EASEGFVYLVSSTGVTGARASVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS  219 (250)
T ss_pred             HhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence            66443222 22221112    24556666777776 355667777 46779999999999999999843

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=92.86  E-value=3.2  Score=42.32  Aligned_cols=66  Identities=24%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.+.|+|.+.+=--.+.     ......++..+..+.   .+|  +.|||.+.+.++.++++|||.+-+|
T Consensus        31 ~~~a~~~~~~g~~~l~v~dl~~~-----~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlg  101 (230)
T TIGR00007        31 VEAAKKWEEEGAERIHVVDLDGA-----KEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIG  101 (230)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCcc-----ccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence            47788888899987754111110     001112333333331   245  7999999999999999999999666

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=2.9  Score=46.04  Aligned_cols=48  Identities=29%  Similarity=0.354  Sum_probs=42.3

Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCcc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPD  379 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~  379 (671)
                      ++|+..|..=+|++.+-|..+.++|.--+++ |-.|.++..+..++.|+
T Consensus       113 ~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~  161 (347)
T COG0826         113 DLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPD  161 (347)
T ss_pred             CCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCC
Confidence            5899999999999999999999999766655 88999999998888764

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=92.75  E-value=5.3  Score=40.85  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             HHHHHHHHHCCCcE---EEECcCC-CceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADV---IKVGIGP-GSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~---IvVdga~-G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.+.|+|-   +.+++.+ ++         .+++.++..+.   .+|  ++||+-+.+.++.++.+|++++-+|
T Consensus        33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~---------~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg  103 (232)
T TIGR03572        33 VNAARIYNAKGADELIVLDIDASKRGR---------EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN  103 (232)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCCcccCC---------CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            47788888899993   3333321 11         12333333331   245  7999999999999999999999888

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=92.62  E-value=0.68  Score=47.33  Aligned_cols=194  Identities=21%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             ecCCChhhHHHHHHHHHhC--CCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         111 SSGISAKDLAGLKEILAAL--PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       111 ~~G~~~~d~~rl~~l~~a~--~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      ..|++.-|.+.+..+..+.  -+++++-+  +  -..++++.++.+. ..|    +|-....++..-..++||||.|-++
T Consensus        18 IsGLnNFd~~~V~~i~~AA~~ggAt~vDI--A--adp~LV~~~~~~s-~lP----ICVSaVep~~f~~aV~AGAdliEIG   88 (242)
T PF04481_consen   18 ISGLNNFDAESVAAIVKAAEIGGATFVDI--A--ADPELVKLAKSLS-NLP----ICVSAVEPELFVAAVKAGADLIEIG   88 (242)
T ss_pred             eeCccccCHHHHHHHHHHHHccCCceEEe--c--CCHHHHHHHHHhC-CCC----eEeecCCHHHHHHHHHhCCCEEEec
Confidence            3466555666666666551  23444333  3  1244555555421 123    3444456788888999999999986


Q ss_pred             c-----CCCce--------EEEEecccCCcchhhhhccccCCccccccH-HHHHHHHHcCCCEEEEcccCCCccccceec
Q psy3862         189 I-----GPGSV--------CTTRLKNKTSDFFLIQFYSCIPQAGNVVTG-EMVEELILSGADVIKVGIGPGSVCTTRLKT  254 (671)
Q Consensus       189 g-----a~G~~--------~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~-~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~  254 (671)
                      -     ++|..        .+++.++..|+.++   ..-+|.-=..-.. +=+.+|.++|||-++===|.-|.++.--+.
T Consensus        89 NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~L---sVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~l  165 (242)
T PF04481_consen   89 NFDSFYAQGRRFSAEEVLALTRETRSLLPDITL---SVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGIL  165 (242)
T ss_pred             chHHHHhcCCeecHHHHHHHHHHHHHhCCCCce---EEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchH
Confidence            6     66653        12223333343221   1112311111111 235567789999999877778888776666


Q ss_pred             cc---CcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862         255 GV---GYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ  331 (671)
Q Consensus       255 gv---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~  331 (671)
                      |.   -.|.++|.|+.+++                                                            .
T Consensus       166 glIekaapTLAaay~ISr~------------------------------------------------------------v  185 (242)
T PF04481_consen  166 GLIEKAAPTLAAAYAISRA------------------------------------------------------------V  185 (242)
T ss_pred             HHHHHHhHHHHHHHHHHhc------------------------------------------------------------c
Confidence            54   25666666655532                                                            3


Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeE---EEccCCCHHHHHHHHhcC
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFT---TIHKYYTLEEWKAFAVQN  377 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglg---vihr~~~~e~~~~~v~~~  377 (671)
                      ++|||.|.==+-.|..||++.+-. |.|   +|+|..+.....+.+++.
T Consensus       186 ~iPVlcASGlS~vT~PmAiaaGAs-GVGVGSavn~Ln~~~aMva~vr~l  233 (242)
T PF04481_consen  186 SIPVLCASGLSAVTAPMAIAAGAS-GVGVGSAVNRLNDEVAMVAAVRSL  233 (242)
T ss_pred             CCceEeccCcchhhHHHHHHcCCc-ccchhHHhhhcccHHHHHHHHHHH
Confidence            589998877777888999986543 333   467888888888877654

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK07695 transcriptional regulator TenI; Provisional

Probab=92.60  E-value=0.51  Score=47.37  Aligned_cols=84  Identities=24%  Similarity=0.257  Sum_probs=53.8

Q ss_pred             HHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccH
Q psy3862         152 RRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTG  224 (671)
Q Consensus       152 k~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~  224 (671)
                      +++++.+|. .+++..+.+.+.++.+.++|+|++..+--..    +..++..+  .+..+..+.   .+|  +.||| +.
T Consensus        87 ~~~r~~~~~-~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~----t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~  160 (201)
T PRK07695         87 RSVREKFPY-LHVGYSVHSLEEAIQAEKNGADYVVYGHVFP----TDCKKGVPARGLEELSDIARALSIPVIAIGGI-TP  160 (201)
T ss_pred             HHHHHhCCC-CEEEEeCCCHHHHHHHHHcCCCEEEECCCCC----CCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CH
Confidence            444555674 3455577888899999999999997632111    11111111  111222221   256  79999 89


Q ss_pred             HHHHHHHHcCCCEEEEc
Q psy3862         225 EMVEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG  241 (671)
                      +.+.+++++|||+|-||
T Consensus       161 ~~~~~~~~~Ga~gvav~  177 (201)
T PRK07695        161 ENTRDVLAAGVSGIAVM  177 (201)
T ss_pred             HHHHHHHHcCCCEEEEE
Confidence            99999999999999777

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=92.59  E-value=3.5  Score=41.42  Aligned_cols=157  Identities=24%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             ccHHHHHHHHHcC--CeEEeecC-----CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862          68 GTFEMAKHLAKHG--LFTTIHKY-----YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA  140 (671)
Q Consensus        68 t~~~lA~Ala~~g--glgvIh~n-----~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a  140 (671)
                      +..+-+....+.|  -+|+++..     .++++..+.....+.....+.+.+..   +.+.+.++... .+.+.+.+.  
T Consensus         7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~---~~~~i~~ia~~-~~~d~Vqlh--   80 (203)
T cd00405           7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE---DLEEILEIAEE-LGLDVVQLH--   80 (203)
T ss_pred             CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC---CHHHHHHHHHh-cCCCEEEEC--
Confidence            3444444444554  45888754     33333222222222212334432222   23444444332 156777764  


Q ss_pred             CCCChHHHHHHHHHHHhCCCceEEEEEeccHHH--HHHHHHCCCcEEEECcCC-----CceEEEEecccCCcchhhhhcc
Q psy3862         141 NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEM--VEELILSGADVIKVGIGP-----GSVCTTRLKNKTSDFFLIQFYS  213 (671)
Q Consensus       141 ~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~--a~~Li~AGaD~IvVdga~-----G~~~~t~v~~~~~~~~~i~~i~  213 (671)
                       +..  -.+.++.+++.++...+.+-.+.+...  +......|+|++.+|+..     |+....       +..++.-+.
T Consensus        81 -g~e--~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~-------~~~~l~~~~  150 (203)
T cd00405          81 -GDE--SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTF-------DWSLLRGLA  150 (203)
T ss_pred             -CCC--CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceE-------ChHHhhccc
Confidence             221  134455555443322221112322222  223445799999999932     222111       111111111


Q ss_pred             -ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862         214 -CIP--QAGNVVTGEMVEELILSG-ADVIKVG  241 (671)
Q Consensus       214 -~~p--~aGnV~t~~~a~~li~aG-AdgvkVG  241 (671)
                       .+|  ++||+ |.+.+..+++.| ++|+=|.
T Consensus       151 ~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~  181 (203)
T cd00405         151 SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVS  181 (203)
T ss_pred             cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcC
Confidence             345  79999 999999999999 9999876

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=92.57  E-value=0.88  Score=48.61  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             HHHHHHHHCCCcEEEECcCCCce-EEEEecccCCcchhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSV-CTTRLKNKTSDFFLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV  247 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~-~~t~v~~~~~~~~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~  247 (671)
                      +-++.|.++|+|.|-+.+-. +. ......+   ....+..+...|   ...=+...++...++++|+|.|++.+.....
T Consensus        30 ~ia~~L~~~Gv~~IEvgsf~-~p~~~p~~~d---~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g~~~v~i~~~~s~~  105 (287)
T PRK05692         30 ALIDRLSAAGLSYIEVASFV-SPKWVPQMAD---AAEVMAGIQRRPGVTYAALTPNLKGLEAALAAGADEVAVFASASEA  105 (287)
T ss_pred             HHHHHHHHcCCCEEEeCCCc-Cccccccccc---HHHHHHhhhccCCCeEEEEecCHHHHHHHHHcCCCEEEEEEecCHH
Confidence            56788999999999886211 00 0000000   000111111111   1222346888899999999999998644433


Q ss_pred             cccceecccCcch-hhhHHHHHHHhhhcCCcch
Q psy3862         248 CTTRLKTGVGYPQ-FSAVLECADAAHGLGGHII  279 (671)
Q Consensus       248 ~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~~~~  279 (671)
                      . .+...+..+.+ +..+.++.++|+++|.++.
T Consensus       106 ~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~  137 (287)
T PRK05692        106 F-SQKNINCSIAESLERFEPVAEAAKQAGVRVR  137 (287)
T ss_pred             H-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence            3 23355566666 4456677888887775543

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=92.56  E-value=1.9  Score=46.09  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=29.4

Q ss_pred             eeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE-eecCCCH
Q psy3862          40 DITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKYYTL   91 (671)
Q Consensus        40 dlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~   91 (671)
                      ||++++     .+++|+-||+.++-......+....+... |+|. +=+..++
T Consensus         1 ~l~~~~-----~Gl~l~nPi~~aag~~~~~~~~~~~~~~~-G~Gavv~kti~~   47 (299)
T cd02940           1 DLSVTF-----CGIKFPNPFGLASAPPTTSYPMIRRAFEA-GWGGAVTKTLGL   47 (299)
T ss_pred             CCceEE-----CCEEcCCCCEeCCcCCCCCHHHHHHHHHh-CCCEEEeccccC
Confidence            577888     48999999999985544455544445555 6654 3334443

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=92.55  E-value=1.3  Score=45.30  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             hCCCceEEEEEec--cHHHHHHHHHCCCcEEEECc-CCCce-EEEEecccCCcchhhhhccccCCccccccHHHHHHHHH
Q psy3862         157 MYPKHVIIAGNVV--TGEMVEELILSGADVIKVGI-GPGSV-CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELIL  232 (671)
Q Consensus       157 ~~P~~~li~g~v~--t~e~a~~Li~AGaD~IvVdg-a~G~~-~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~  232 (671)
                      .+|...++.+.-.  ....+++|++.|.++|-|-= ++.-. .++.+++++|+.        +.=||-|.|.+++.++++
T Consensus        12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~--------lIGAGTVL~~~q~~~a~~   83 (211)
T COG0800          12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEA--------LIGAGTVLNPEQARQAIA   83 (211)
T ss_pred             HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCccc--------EEccccccCHHHHHHHHH
Confidence            3566556655432  24667899999999996622 11100 111222222210        114999999999999999


Q ss_pred             cCCCEE
Q psy3862         233 SGADVI  238 (671)
Q Consensus       233 aGAdgv  238 (671)
                      +||+-+
T Consensus        84 aGa~fi   89 (211)
T COG0800          84 AGAQFI   89 (211)
T ss_pred             cCCCEE
Confidence            999987

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=92.49  E-value=3.4  Score=42.80  Aligned_cols=166  Identities=14%  Similarity=0.180  Sum_probs=94.7

Q ss_pred             HHHHHHHHHCCCcEEE---ECcCCCceEEEEecccCCcchhhhhc-c-c-cC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         171 GEMVEELILSGADVIK---VGIGPGSVCTTRLKNKTSDFFLIQFY-S-C-IP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       171 ~e~a~~Li~AGaD~Iv---Vdga~G~~~~t~v~~~~~~~~~i~~i-~-~-~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      .+.|+.+.+.|+|-+-   +|++.|+.         ++..++.-+ . + .|  ++|||-|.+.++.++++||+-|-+| 
T Consensus        33 ~~~a~~~~~~ga~~lhivDLd~a~~~~---------~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvig-  102 (232)
T PRK13586         33 IEIASKLYNEGYTRIHVVDLDAAEGVG---------NNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFS-  102 (232)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCcCCCc---------chHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEEC-
Confidence            4788888899998652   23333321         222333222 2 2 25  7999999999999999999998777 


Q ss_pred             cCCCccccceecccCcchhhhHHHHHHHhhhcC-CcchhhhhhccceeeccccCCC-ceeeeecCCCccCCCCcccceee
Q psy3862         243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG-GHIISFLTAMAQKIINDIKLDF-KDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~l~f-dDVll~P~rst~~sr~eVdl~~~  320 (671)
                                -..+-.|.+  +   .++++.+| -+|+.             ++|+ ++=.+.+..              
T Consensus       103 ----------t~a~~~p~~--~---~~~~~~~g~~~ivv-------------slD~~~~~~v~~~g--------------  140 (232)
T PRK13586        103 ----------TIVFTNFNL--F---HDIVREIGSNRVLV-------------SIDYDNTKRVLIRG--------------  140 (232)
T ss_pred             ----------chhhCCHHH--H---HHHHHHhCCCCEEE-------------EEEcCCCCEEEccC--------------
Confidence                      233335532  2   33344443 22322             1222 111111111              


Q ss_pred             eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc---------cCCCHHHHHHHHhcCcccccceeeeccc-
Q psy3862         321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH---------KYYTLEEWKAFAVQNPDVIKHVADGGCT-  390 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih---------r~~~~e~~~~~v~~~~~~~~~v~~~~~~-  390 (671)
                               |..        ....-.+++..+.++|.=.+|.         .-.++|- .+.+.+.+.  . +-++||+ 
T Consensus       141 ---------w~~--------~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el-~~~~~~~~~--~-viasGGv~  199 (232)
T PRK13586        141 ---------WKE--------KSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNV-KDYARLIRG--L-KEYAGGVS  199 (232)
T ss_pred             ---------Cee--------CCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHH-HHHHHhCCC--C-EEEECCCC
Confidence                     000        1123357888888887655555         3455553 555554443  2 3446666 


Q ss_pred             ChhhHHHHHHcCCcEEEEc
Q psy3862         391 SPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       391 ~~~~~~~l~~aG~d~i~id  409 (671)
                      +.+|+.++.++|+|-..+-
T Consensus       200 s~~Dl~~l~~~G~~gvivg  218 (232)
T PRK13586        200 SDADLEYLKNVGFDYIIVG  218 (232)
T ss_pred             CHHHHHHHHHCCCCEEEEe
Confidence            4699999999999988876

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=92.45  E-value=1.5  Score=45.53  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEE---E--EEe----------ccH
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVII---A--GNV----------VTG  171 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li---~--g~v----------~t~  171 (671)
                      |+.++-|+  +..+.++.++..  +++-+++.++--   .-.++++++-+.|+.-..+   .  +.+          ...
T Consensus        77 pv~vgGGi--rs~edv~~~l~~--Ga~kvviGs~~l---~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~  149 (241)
T PRK14024         77 KVELSGGI--RDDESLEAALAT--GCARVNIGTAAL---ENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLW  149 (241)
T ss_pred             CEEEcCCC--CCHHHHHHHHHC--CCCEEEECchHh---CCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHH
Confidence            45554455  456777777776  777776654421   1122333333233321111   0  111          124


Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH---cCCCEEEEc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL---SGADVIKVG  241 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~---aGAdgvkVG  241 (671)
                      +.++.+.++|++.|.+-.     .+..-...-+++.++..+.   .+|  ++|||.+.+.++.+..   .|||||-+|
T Consensus       150 ~~~~~l~~~G~~~iiv~~-----~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ig  222 (241)
T PRK14024        150 EVLERLDSAGCSRYVVTD-----VTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVG  222 (241)
T ss_pred             HHHHHHHhcCCCEEEEEe-----ecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEe
Confidence            778889999999887632     1100001124544444442   356  7999999999999864   599999998

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=92.43  E-value=0.24  Score=52.54  Aligned_cols=82  Identities=21%  Similarity=0.306  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc-CCCce--EEEEecccCCcchhhhhccccC--Cccccc
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI-GPGSV--CTTRLKNKTSDFFLIQFYSCIP--QAGNVV  222 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg-a~G~~--~~t~v~~~~~~~~~i~~i~~~p--~aGnV~  222 (671)
                      .+.+++.|+.+|.. ++.-.+.+.+.+..+.++|+|+|.+|- .+...  ....++..++         .+|  +.||| 
T Consensus       171 ~~av~~~R~~~~~~-~IgVev~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~---------~i~i~AsGGI-  239 (272)
T cd01573         171 LKALARLRATAPEK-KIVVEVDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAP---------PVLLAAAGGI-  239 (272)
T ss_pred             HHHHHHHHHhCCCC-eEEEEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCC---------CceEEEECCC-
Confidence            56677777767754 555577889999989999999998874 11100  0000111111         134  78999 


Q ss_pred             cHHHHHHHHHcCCCEEEE
Q psy3862         223 TGEMVEELILSGADVIKV  240 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkV  240 (671)
                      |.+.+.++.++|||++-+
T Consensus       240 ~~~ni~~~~~~Gvd~I~v  257 (272)
T cd01573         240 NIENAAAYAAAGADILVT  257 (272)
T ss_pred             CHHHHHHHHHcCCcEEEE
Confidence            999999999999999933

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=92.42  E-value=1.9  Score=43.07  Aligned_cols=68  Identities=29%  Similarity=0.434  Sum_probs=41.5

Q ss_pred             ChhhHHHHHHcCCcEEEEcccccccccc----c--cccccccccccccccccccccC--c-eeeccccCchhHHHHHHcC
Q psy3862         391 SPGDVAKAMGAGADFVMLGGMFAGHDQS----G--GELTNIEYMFFPLVGDMNSYLG--G-VVDGGCTSPGDVAKAMGAG  461 (671)
Q Consensus       391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~----~--~~~~~~~~~~~~~~~~~~~~~~--~-~i~gG~v~t~~~a~~l~aG  461 (671)
                      ++++..+..+.|+|++++.....+-++.    .  ++.++          .+++.++  . ++.|| +...++.+++.+|
T Consensus       113 t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~v~a~GG-I~~~~i~~~~~~G  181 (212)
T PRK00043        113 TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLR----------EIRAAVGDIPIVAIGG-ITPENAPEVLEAG  181 (212)
T ss_pred             CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHH----------HHHHhcCCCCEEEECC-cCHHHHHHHHHcC
Confidence            4567777778999999986333222111    1  22222          2233332  1 45666 4677777789999


Q ss_pred             CcEEEECc
Q psy3862         462 ADFVMLGG  469 (671)
Q Consensus       462 Ad~V~vG~  469 (671)
                      ||+|-+|.
T Consensus       182 a~gv~~gs  189 (212)
T PRK00043        182 ADGVAVVS  189 (212)
T ss_pred             CCEEEEeH
Confidence            99998874

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=92.41  E-value=3.1  Score=43.27  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             cCceEEe----cCCCccccHHHHHHHHHcCCeEE-eecC--CCHHHHHHhhhcCcc-cccc-eEEecCCChhhHHHHHHH
Q psy3862          55 QGVPIIA----ANMDTVGTFEMAKHLAKHGLFTT-IHKY--YTLEEWKAFAVQNPD-VIKH-VAVSSGISAKDLAGLKEI  125 (671)
Q Consensus        55 l~~Piv~----a~M~~vt~~~lA~Ala~~gglgv-Ih~n--~~~Eeq~~~i~~~p~-~~~~-~~v~~G~~~~d~~rl~~l  125 (671)
                      .++|++-    ++| .....++...+...|.-++ +|--  -+.|+..++...... -.+. +.+++..+   .+++..+
T Consensus        73 ~~~Pl~lM~y~n~~-~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~---~e~l~~~  148 (244)
T PRK13125         73 VSVPIILMTYLEDY-VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP---DLLIHRL  148 (244)
T ss_pred             CCCCEEEEEecchh-hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHH
Confidence            4668642    333 1234667777888887787 5621  112333333221111 1111 12333333   4566666


Q ss_pred             HHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         126 LAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       126 ~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +...++..++.++..+|.  .....+.++++|+..+...++++ .+.+.+.++.+.++|||.+++++
T Consensus       149 ~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS  215 (244)
T PRK13125        149 SKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT  215 (244)
T ss_pred             HHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence            665444333344433332  34556677777765554345544 56699999999999999999853

>PRK00208 thiG thiazole synthase; Reviewed

Probab=92.27  E-value=1  Score=47.04  Aligned_cols=68  Identities=29%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             hhhHHHHHHcCCcEEEEcccccc--ccccccccccccccccccccccccccC-c-eeeccccCchhHHHHHHcCCcEEEE
Q psy3862         392 PGDVAKAMGAGADFVMLGGMFAG--HDQSGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       392 ~~~~~~l~~aG~d~i~id~~a~g--h~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      +....++.++|+|++.--|.--|  +....-+.          ++.+++..+ . ++.||+-.+.+++++|+.|||+|.|
T Consensus       134 ~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~----------i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV  203 (250)
T PRK00208        134 PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYN----------LRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL  203 (250)
T ss_pred             HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHH----------HHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            35556677889999976333323  22111122          222233221 1 4566655555556689999999999


Q ss_pred             Cc
Q psy3862         468 GG  469 (671)
Q Consensus       468 G~  469 (671)
                      |.
T Consensus       204 ~S  205 (250)
T PRK00208        204 NT  205 (250)
T ss_pred             Ch
Confidence            85

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=92.17  E-value=4.9  Score=42.16  Aligned_cols=65  Identities=15%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHHHHHHHHCCCcEEE-ECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIK-VGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~Iv-Vdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.+.|+|-|. +|...-      -..+-+++.++.-+.   .+|  +.||+-+.+.++.++.+|++++-+|
T Consensus        33 ~~~a~~~~~~g~~~l~i~Dl~~~------~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig  103 (258)
T PRK01033         33 INAVRIFNEKEVDELIVLDIDAS------KRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN  103 (258)
T ss_pred             HHHHHHHHHcCCCEEEEEECCCC------cCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence            4778899999987663 333110      001123444443332   246  7999999999999999999999887

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=92.16  E-value=0.84  Score=48.02  Aligned_cols=152  Identities=22%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             HHHHHHHHHcCCeEE-ee-----cCCCHHHHHHhhh---cCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862          70 FEMAKHLAKHGLFTT-IH-----KYYTLEEWKAFAV---QNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA  140 (671)
Q Consensus        70 ~~lA~Ala~~gglgv-Ih-----~n~~~Eeq~~~i~---~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a  140 (671)
                      .++|.++...|--++ +.     -+.+++... .++   .-|...+.|.      . +...+.+...+  ++|++.+...
T Consensus        73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~-~v~~~v~iPvl~kdfi------~-~~~qi~~a~~~--GAD~VlLi~~  142 (260)
T PRK00278         73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLR-AARAAVSLPVLRKDFI------I-DPYQIYEARAA--GADAILLIVA  142 (260)
T ss_pred             HHHHHHHHhCCCeEEEEecccccCCCCHHHHH-HHHHhcCCCEEeeeec------C-CHHHHHHHHHc--CCCEEEEEec
Confidence            679998888776554 31     123344322 222   1233222221      1 12256666666  8899888755


Q ss_pred             CCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc----hhhhhcc-cc
Q psy3862         141 NGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF----FLIQFYS-CI  215 (671)
Q Consensus       141 ~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~----~~i~~i~-~~  215 (671)
                      .-....+.++++..++ +  +..+..-+.+.+.++++.++|+|+|-+.   +....+.    .+++    .+++.+. ..
T Consensus       143 ~l~~~~l~~li~~a~~-l--Gl~~lvevh~~~E~~~A~~~gadiIgin---~rdl~~~----~~d~~~~~~l~~~~p~~~  212 (260)
T PRK00278        143 ALDDEQLKELLDYAHS-L--GLDVLVEVHDEEELERALKLGAPLIGIN---NRNLKTF----EVDLETTERLAPLIPSDR  212 (260)
T ss_pred             cCCHHHHHHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHcCCCEEEEC---CCCcccc----cCCHHHHHHHHHhCCCCC
Confidence            3112334444444433 2  2222234677888888999999999652   2111010    0111    1122221 12


Q ss_pred             C--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         216 P--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       216 p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |  +-||+-|.+.++.++++|||+|-||
T Consensus       213 ~vIaegGI~t~ed~~~~~~~Gad~vlVG  240 (260)
T PRK00278        213 LVVSESGIFTPEDLKRLAKAGADAVLVG  240 (260)
T ss_pred             EEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence            3  5799999999999999999999998

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=92.10  E-value=0.12  Score=51.10  Aligned_cols=88  Identities=27%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV  222 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~  222 (671)
                      .+.+.++.+++.+|...++.--+.+.+.++.++++|+|.|.+|...-..   +...++...+++       .+-++||| 
T Consensus        65 ~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v-------~ie~SGGI-  136 (169)
T PF01729_consen   65 GIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPRV-------KIEASGGI-  136 (169)
T ss_dssp             SHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTS-------EEEEESSS-
T ss_pred             CHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcE-------EEEEECCC-
Confidence            3667778888878776655556788999999999999999887632110   000011111110       01168988 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+.++.+.|+|.+=+|
T Consensus       137 ~~~ni~~ya~~gvD~isvg  155 (169)
T PF01729_consen  137 TLENIAEYAKTGVDVISVG  155 (169)
T ss_dssp             STTTHHHHHHTT-SEEEEC
T ss_pred             CHHHHHHHHhcCCCEEEcC
Confidence            7788888899999999777

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=92.01  E-value=0.4  Score=45.37  Aligned_cols=92  Identities=20%  Similarity=0.055  Sum_probs=58.0

Q ss_pred             HHHHHHHHcCCeEEEc--cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccc
Q psy3862         347 EMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTN  424 (671)
Q Consensus       347 ~mA~~la~~Gglgvih--r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~  424 (671)
                      .++..+-+.+||-|++  .+.|+|+.++.+                        .+.++|+++|-+....|.+..-.+++
T Consensus        20 ~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa------------------------~e~~adii~iSsl~~~~~~~~~~~~~   75 (132)
T TIGR00640        20 KVIATAYADLGFDVDVGPLFQTPEEIARQA------------------------VEADVHVVGVSSLAGGHLTLVPALRK   75 (132)
T ss_pred             HHHHHHHHhCCcEEEECCCCCCHHHHHHHH------------------------HHcCCCEEEEcCchhhhHHHHHHHHH
Confidence            3556677788888888  566777766655                        34567777775333455544444433


Q ss_pred             ccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862         425 IEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG  473 (671)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G  473 (671)
                      .++...+.       --.++.||+..+.+..++.++|.|.+    ++||
T Consensus        76 ~L~~~g~~-------~i~vivGG~~~~~~~~~l~~~Gvd~~----~~~g  113 (132)
T TIGR00640        76 ELDKLGRP-------DILVVVGGVIPPQDFDELKEMGVAEI----FGPG  113 (132)
T ss_pred             HHHhcCCC-------CCEEEEeCCCChHhHHHHHHCCCCEE----ECCC
Confidence            33332110       01156899887777788889999988    6788

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=91.94  E-value=2.6  Score=44.33  Aligned_cols=58  Identities=24%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             HcCCcEEEEccccccccccccccccccccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ..++|.||+-|...|+..+.-++ +..          |+..+ .+++|+=+...++.++|+. ||+++||.
T Consensus       170 ~~~aDaviVtG~~TG~~~~~~~l-~~v----------r~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS  228 (254)
T PF03437_consen  170 RGGADAVIVTGKATGEPPDPEKL-KRV----------REAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGS  228 (254)
T ss_pred             hcCCCEEEECCcccCCCCCHHHH-HHH----------HhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEee
Confidence            45899999998888886544332 222          22222 2556666777777888865 89999995

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=91.88  E-value=3.2  Score=47.23  Aligned_cols=158  Identities=19%  Similarity=0.107  Sum_probs=93.8

Q ss_pred             EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-cc--CCccccccHHHHHHHHHcCCCEEEEccc
Q psy3862         167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CI--PQAGNVVTGEMVEELILSGADVIKVGIG  243 (671)
Q Consensus       167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~--p~aGnV~t~~~a~~li~aGAdgvkVG~~  243 (671)
                      -+.+.+.++..+++|+++|=|..-.=   .|.-.+...+..+.+++. .+  ..-+||-|.+.++.+.. ||||+.||  
T Consensus       165 Evh~~~El~~al~~~a~iiGiNnRdL---~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG--  238 (454)
T PRK09427        165 EVSNEEELERAIALGAKVIGINNRNL---RDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIG--  238 (454)
T ss_pred             EECCHHHHHHHHhCCCCEEEEeCCCC---ccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEEC--
Confidence            46789999999999999994422111   010000001122233331 11  15799999999999865 79999999  


Q ss_pred             CCCccccceecccCcchhhhHHHHHHHhhhc---CCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862         244 PGSVCTTRLKTGVGYPQFSAVLECADAAHGL---GGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       244 ~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~  320 (671)
                            |..+..- .|.        +..+++   .++|.                                         
T Consensus       239 ------~~lm~~~-d~~--------~~~~~L~~~~vKIC-----------------------------------------  262 (454)
T PRK09427        239 ------SSLMAED-DLE--------LAVRKLILGENKVC-----------------------------------------  262 (454)
T ss_pred             ------HHHcCCC-CHH--------HHHHHHhccccccC-----------------------------------------
Confidence                  4444321 111        111111   11111                                         


Q ss_pred             eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcC--CeEEEc-----cCCCHHHHHHHHhcCcccccceeeecccChh
Q psy3862         321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG--LFTTIH-----KYYTLEEWKAFAVQNPDVIKHVADGGCTSPG  393 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~G--glgvih-----r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~  393 (671)
                                           .+++.+-|...+++|  .+|+|+     ||.|+++..+....+|  ++.|+..-..+++
T Consensus       263 ---------------------Git~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~--v~~VgVfv~~~~~  319 (454)
T PRK09427        263 ---------------------GLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP--LRYVGVFRNADIE  319 (454)
T ss_pred             ---------------------CCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC--CCEEEEEeCCCHH
Confidence                                 256777777777776  578875     7888888777777666  3334433334557


Q ss_pred             hHHHHH-HcCCcEEEEc
Q psy3862         394 DVAKAM-GAGADFVMLG  409 (671)
Q Consensus       394 ~~~~l~-~aG~d~i~id  409 (671)
                      ++.+++ +.+.|++-+.
T Consensus       320 ~i~~i~~~~~lD~vQLH  336 (454)
T PRK09427        320 DIVDIAKQLSLAAVQLH  336 (454)
T ss_pred             HHHHHHHHcCCCEEEeC
Confidence            777764 6789988764

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=91.82  E-value=1.2  Score=47.21  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceE-EEEecccCCcchhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVC-TTRLKNKTSDFFLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV  247 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~-~t~v~~~~~~~~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~  247 (671)
                      +-++.|.++|+|.|-+.+. .+.- .....+.   -.++..+...+   ..+=+...++++.++++|+|.+.+.+...-.
T Consensus        24 ~i~~~L~~~Gv~~IEvGs~-~~~~~~p~~~d~---~~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g~~~i~i~~~~Sd~   99 (274)
T cd07938          24 ELIDALSAAGLRRIEVTSF-VSPKWVPQMADA---EEVLAGLPRRPGVRYSALVPNLRGAERALAAGVDEVAVFVSASET   99 (274)
T ss_pred             HHHHHHHHcCCCEEEeCCC-CCcccccccCCH---HHHHhhcccCCCCEEEEECCCHHHHHHHHHcCcCEEEEEEecCHH
Confidence            5678899999999988631 1110 0000000   00010010000   1111357889999999999999888655443


Q ss_pred             cccceecccCcc-hhhhHHHHHHHhhhcCCcc
Q psy3862         248 CTTRLKTGVGYP-QFSAVLECADAAHGLGGHI  278 (671)
Q Consensus       248 ~~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~~~  278 (671)
                      ...+ ..+..+. .+..+.++.+.+++.|.++
T Consensus       100 ~~~~-~~~~s~~~~~~~~~~~v~~ak~~G~~v  130 (274)
T cd07938         100 FSQK-NINCSIAESLERFEPVAELAKAAGLRV  130 (274)
T ss_pred             HHHH-HcCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence            3322 3333333 3455677788888776543

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=91.79  E-value=2.9  Score=44.71  Aligned_cols=70  Identities=19%  Similarity=0.081  Sum_probs=46.2

Q ss_pred             eccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEcccC
Q psy3862         168 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVGIGP  244 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~  244 (671)
                      +.....++.|.++|||+|  |   .   +.++.   |.-.++..++   ..|..-++.|-+-++..+++|||-|+     
T Consensus        83 igh~~Ea~~L~~~GvDiI--D---~---Te~lr---pad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~-----  146 (293)
T PRK04180         83 IGHFVEAQILEALGVDYI--D---E---SEVLT---PADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIR-----  146 (293)
T ss_pred             hhHHHHHHHHHHcCCCEE--e---c---cCCCC---chHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeee-----
Confidence            344688999999999999  3   1   11111   1111222222   35777889999999999999999874     


Q ss_pred             CCccccceecccCc
Q psy3862         245 GSVCTTRLKTGVGY  258 (671)
Q Consensus       245 ~~~~~Tr~V~gv~~  258 (671)
                          ||-+ +|-|.
T Consensus       147 ----Ttge-~gtg~  155 (293)
T PRK04180        147 ----TKGE-AGTGN  155 (293)
T ss_pred             ----ccCC-CCCcc
Confidence                5555 66664

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=91.76  E-value=0.32  Score=51.52  Aligned_cols=82  Identities=29%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             HHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--Ccccccc
Q psy3862         149 DFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVT  223 (671)
Q Consensus       149 ~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t  223 (671)
                      ..++++|+..|...++.-.+.|.+++..++++|+|+|-+|--.-.    .+++      .++.+.   .+|  +.||| |
T Consensus       169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~e----~l~~------~v~~i~~~~~i~i~asGGI-t  237 (269)
T cd01568         169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSPE----ELKE------AVKLLKGLPRVLLEASGGI-T  237 (269)
T ss_pred             HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhccCCCeEEEEECCC-C
Confidence            456667777775556777888999999999999999988652111    1110      011111   234  67777 7


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.++.++|||++=+|
T Consensus       238 ~~ni~~~a~~Gad~Isvg  255 (269)
T cd01568         238 LENIRAYAETGVDVISTG  255 (269)
T ss_pred             HHHHHHHHHcCCCEEEEc
Confidence            899999999999999654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=91.76  E-value=9.9  Score=36.92  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CC-ceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PK-HVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT  197 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~-~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t  197 (671)
                      +.+..+.+.  +++.+.++..........+.++++++.. +. ..++.     .+..+.+.++|+|.+-.....-  ...
T Consensus        16 ~~l~~l~~~--g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~-----~~~~~~a~~~g~~~vh~~~~~~--~~~   86 (196)
T cd00564          16 EVVEAALKG--GVTLVQLREKDLSARELLELARALRELCRKYGVPLII-----NDRVDLALAVGADGVHLGQDDL--PVA   86 (196)
T ss_pred             HHHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEE-----eChHHHHHHcCCCEEecCcccC--CHH
Confidence            456667676  7788888876655555556666665432 11 12222     2356677899999884321110  000


Q ss_pred             EecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+++..+.        ...+...+.|.+.++.+...|+|.+-++
T Consensus        87 ~~~~~~~~--------~~~~g~~~~t~~~~~~~~~~g~d~i~~~  122 (196)
T cd00564          87 EARALLGP--------DLIIGVSTHSLEEALRAEELGADYVGFG  122 (196)
T ss_pred             HHHHHcCC--------CCEEEeeCCCHHHHHHHhhcCCCEEEEC
Confidence            00000000        0112333456777888888888888765

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=91.67  E-value=2.5  Score=44.14  Aligned_cols=121  Identities=20%  Similarity=0.270  Sum_probs=71.3

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E------------------
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N------------------  167 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~------------------  167 (671)
                      |+.++-|+.  ..+.+.+++..  +++.+++..+.-   .-.+.++++.+.||.-.++.+ .                  
T Consensus        76 pv~~~GGi~--s~~d~~~~~~~--Ga~~vivgt~~~---~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g  148 (254)
T TIGR00735        76 PLTVGGGIK--SIEDVDKLLRA--GADKVSINTAAV---KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG  148 (254)
T ss_pred             CEEEECCCC--CHHHHHHHHHc--CCCEEEEChhHh---hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence            455544553  34556666665  677777754421   113455555555652111111 0                  


Q ss_pred             ------eccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC
Q psy3862         168 ------VVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG  234 (671)
Q Consensus       168 ------v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG  234 (671)
                            ....+.++.|.++|+|.|.+.+  ..|+.       ..+++.++.-+.   .+|  ++|||.+.+.+..++..|
T Consensus       149 w~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~-------~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g  221 (254)
T TIGR00735       149 GRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTK-------SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG  221 (254)
T ss_pred             CcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCC-------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence                  1124667899999999988743  22221       112333333332   356  799999999999999988


Q ss_pred             -CCEEEEc
Q psy3862         235 -ADVIKVG  241 (671)
Q Consensus       235 -AdgvkVG  241 (671)
                       |||+-+|
T Consensus       222 ~~dgv~~g  229 (254)
T TIGR00735       222 KADAALAA  229 (254)
T ss_pred             CcceeeEh
Confidence             9999888

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.48  E-value=0.4  Score=51.05  Aligned_cols=84  Identities=25%  Similarity=0.336  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      +.+.+++.|+..|...++.-.+.+.++++.+.++|+|+|-+|- -|-   ..+++      .++.+. .+|  +.||| |
T Consensus       174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-~~~---e~l~~------~~~~~~~~i~i~AiGGI-t  242 (277)
T PRK08072        174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-RTP---DEIRE------FVKLVPSAIVTEASGGI-T  242 (277)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-CCH---HHHHH------HHHhcCCCceEEEECCC-C
Confidence            5566777777776556677788899999999999999998863 110   00110      001111 134  78999 9


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.++.++|||+|=||
T Consensus       243 ~~ni~~~a~~Gvd~IAvg  260 (277)
T PRK08072        243 LENLPAYGGTGVDYISLG  260 (277)
T ss_pred             HHHHHHHHHcCCCEEEEC
Confidence            999999999999999777

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=91.27  E-value=8.6  Score=36.81  Aligned_cols=65  Identities=29%  Similarity=0.219  Sum_probs=34.5

Q ss_pred             HHHcCCcEEEEccccccccccccccccccccccccccccccccC-c-eeeccccCc-hhHHHHHHcCCcEEEEC
Q psy3862         398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSP-GDVAKAMGAGADFVMLG  468 (671)
Q Consensus       398 l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t-~~~a~~l~aGAd~V~vG  468 (671)
                      +.+.|+|+|.+++...+-........     ..+.+..+++..+ . +..|| +.+ .++.+++.+|||+|.+|
T Consensus       132 ~~~~g~d~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~pi~~~GG-i~~~~~~~~~~~~Gad~v~vg  199 (200)
T cd04722         132 AEEAGVDEVGLGNGGGGGGGRDAVPI-----ADLLLILAKRGSKVPVIAGGG-INDPEDAAEALALGADGVIVG  199 (200)
T ss_pred             HHHcCCCEEEEcCCcCCCCCccCchh-----HHHHHHHHHhcCCCCEEEECC-CCCHHHHHHHHHhCCCEEEec
Confidence            57789999999854332211111000     0000111111111 1 44565 566 66677888899999998

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=91.25  E-value=2.4  Score=42.31  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             HHHHHHHHHcCCeEE-EccCCCHHHHHHHHhcCcccccceee-ecccChhhHHHHHHcCCcEEEEcccccccccccc--c
Q psy3862         346 FEMAKHLAKHGLFTT-IHKYYTLEEWKAFAVQNPDVIKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG--E  421 (671)
Q Consensus       346 ~~mA~~la~~Gglgv-ihr~~~~e~~~~~v~~~~~~~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~--~  421 (671)
                      .+.+..+.+.|.-++ +|-..+ ++...+++..+..-..+.. ....++.+..+.+..++|++.++....|.+....  .
T Consensus        69 ~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~  147 (210)
T TIGR01163        69 DRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPD  147 (210)
T ss_pred             HHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence            466777778887663 454332 3333333221111001111 1111233333334567999888743334432211  1


Q ss_pred             cccccccccccccccccccC------c-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         422 LTNIEYMFFPLVGDMNSYLG------G-VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~------~-~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .++       .++.++++.+      . .++|| +...++.+++.+|||++.||.
T Consensus       148 ~~~-------~i~~i~~~~~~~~~~~~i~v~GG-I~~env~~l~~~gad~iivgs  194 (210)
T TIGR01163       148 TLE-------KIREVRKMIDENGLSILIEVDGG-VNDDNARELAEAGADILVAGS  194 (210)
T ss_pred             HHH-------HHHHHHHHHHhcCCCceEEEECC-cCHHHHHHHHHcCCCEEEECh
Confidence            111       1112222211      1 34566 466666778899999999985

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=91.18  E-value=1.9  Score=45.15  Aligned_cols=121  Identities=23%  Similarity=0.309  Sum_probs=71.7

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE--------------------
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG--------------------  166 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g--------------------  166 (671)
                      |+.++-|+  +..+.+.+++..  +++.++++.+-   ..-.+.++++.+.|+...++.+                    
T Consensus        76 pv~~gGGi--~s~~d~~~l~~~--G~~~vvigs~~---~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~  148 (258)
T PRK01033         76 PLCYGGGI--KTLEQAKKIFSL--GVEKVSINTAA---LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK  148 (258)
T ss_pred             CEEECCCC--CCHHHHHHHHHC--CCCEEEEChHH---hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence            45444444  345666666665  67777776531   1113445555444542111110                    


Q ss_pred             --EeccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHH-HcCCC
Q psy3862         167 --NVVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELI-LSGAD  236 (671)
Q Consensus       167 --~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li-~aGAd  236 (671)
                        .....+.++.+.+.|++.+.+-.  ..|+.       .-+++.++..+.   .+|  ++|||.+.+.++.++ ..|+|
T Consensus       149 ~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~-------~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~Gvd  221 (258)
T PRK01033        149 KLKKDPLELAKEYEALGAGEILLNSIDRDGTM-------KGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGAD  221 (258)
T ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEccCCCCCc-------CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCC
Confidence              11124778889999999887632  22211       113444444443   356  799999999999999 79999


Q ss_pred             EEEEc
Q psy3862         237 VIKVG  241 (671)
Q Consensus       237 gvkVG  241 (671)
                      |+-+|
T Consensus       222 gVivg  226 (258)
T PRK01033        222 AAAAG  226 (258)
T ss_pred             EEEEc
Confidence            99888

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.12  E-value=1  Score=47.96  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVV  222 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~  222 (671)
                      .+.+.++++|+..|...+|.--+.+.++++.++++|+|+|-+|--.-.    .+++      .++++.   .+-++||| 
T Consensus       178 ~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~s~e----~l~~------av~~~~~~~~leaSGgI-  246 (281)
T PRK06543        178 DLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNFSLD----DLRE------GVELVDGRAIVEASGNV-  246 (281)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCCCHH----HHHH------HHHHhCCCeEEEEECCC-
Confidence            467788888877775556666778999999999999999988742210    0110      001111   11278998 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+.+....|+|.+-+|
T Consensus       247 ~~~ni~~yA~tGVD~Is~g  265 (281)
T PRK06543        247 NLNTVGAIASTGVDVISVG  265 (281)
T ss_pred             CHHHHHHHHhcCCCEEEeC
Confidence            8889999999999999777

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=91.12  E-value=3.3  Score=43.67  Aligned_cols=61  Identities=23%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             HHcC-CcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         399 MGAG-ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       399 ~~aG-~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +..| +|.+++-|..+|+..+.-.+. ..+...+.+        .++.||-+...++.++++. ||++.||.
T Consensus       167 ~~~~~aDavivtG~~TG~~~d~~~l~-~vr~~~~~~--------PvllggGvt~eNv~e~l~~-adGviVgS  228 (257)
T TIGR00259       167 VERGLADAVILSGKTTGTEVDLELLK-LAKETVKDT--------PVLAGSGVNLENVEELLSI-ADGVIVAT  228 (257)
T ss_pred             HHhcCCCEEEECcCCCCCCCCHHHHH-HHHhccCCC--------eEEEECCCCHHHHHHHHhh-CCEEEECC
Confidence            4444 999999999999764433221 111101100        1445666789999998876 99999985

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=91.09  E-value=3.8  Score=45.73  Aligned_cols=95  Identities=16%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHhCCCceEEEEE-e-cc----HHHHHHHHHCCCcEEEECcCCCceE--EE---EecccCCc-c-hhhhh
Q psy3862         145 QTFVDFVRRIREMYPKHVIIAGN-V-VT----GEMVEELILSGADVIKVGIGPGSVC--TT---RLKNKTSD-F-FLIQF  211 (671)
Q Consensus       145 ~~~~~~ik~lr~~~P~~~li~g~-v-~t----~e~a~~Li~AGaD~IvVdga~G~~~--~t---~v~~~~~~-~-~~i~~  211 (671)
                      +.+++.++++++.+|...+|+.- . .+    .+-++.+.++|||+|.+..+.=|..  ..   .+.+ .|+ + .++..
T Consensus        98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq-~~e~~~~i~~~  176 (385)
T PLN02495         98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQ-DCDLLEEVCGW  176 (385)
T ss_pred             HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhcc-CHHHHHHHHHH
Confidence            45666677777777765555532 1 23    3677788899999999877532210  00   0000 010 0 01111


Q ss_pred             cc---ccC----CccccccH-HHHHHHHHcCCCEEEE
Q psy3862         212 YS---CIP----QAGNVVTG-EMVEELILSGADVIKV  240 (671)
Q Consensus       212 i~---~~p----~aGnV~t~-~~a~~li~aGAdgvkV  240 (671)
                      ++   .+|    ..-|+.+- +-++++.++|||||-.
T Consensus       177 Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~l  213 (385)
T PLN02495        177 INAKATVPVWAKMTPNITDITQPARVALKSGCEGVAA  213 (385)
T ss_pred             HHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEE
Confidence            11   244    45566544 4566688999999944

>PLN02334 ribulose-phosphate 3-epimerase

Probab=91.04  E-value=2.7  Score=43.12  Aligned_cols=71  Identities=24%  Similarity=0.339  Sum_probs=40.0

Q ss_pred             hhHHHHHHcC-CcEEEEccccccccccccccccccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         393 GDVAKAMGAG-ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       393 ~~~~~l~~aG-~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                      +.+.++.+.| +|++.+-.+-.|.+.....     ..-+..+..++++..+   .++||+ ...++.+++.+|||++.||
T Consensus       129 ~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~-----~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvg  202 (229)
T PLN02334        129 EAVEPVVEKGLVDMVLVMSVEPGFGGQSFI-----PSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIVAG  202 (229)
T ss_pred             HHHHHHHhccCCCEEEEEEEecCCCccccC-----HHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEC
Confidence            4455555554 9999876444455432110     0000112223333222   467884 6666677889999999998


Q ss_pred             c
Q psy3862         469 G  469 (671)
Q Consensus       469 ~  469 (671)
                      .
T Consensus       203 s  203 (229)
T PLN02334        203 S  203 (229)
T ss_pred             h
Confidence            5

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=91.01  E-value=4.3  Score=42.97  Aligned_cols=122  Identities=16%  Similarity=0.108  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcc-cccceeeecc-cChhhHHHHHHcCCcEEEEccccccccccccc
Q psy3862         344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHVADGGC-TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  421 (671)
Q Consensus       344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~-~~~~v~~~~~-~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~  421 (671)
                      +-.++...+++.|-=|+|=--+++||..++....++ -+..+.-..- ++++++.++.+..-.||.+- +..|-.-...+
T Consensus       107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v-S~~GvTG~~~~  185 (263)
T CHL00200        107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV-STTGVTGLKTE  185 (263)
T ss_pred             CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE-cCCCCCCCCcc
Confidence            456788999999999999999999987776654332 1333333333 34577777766655577765 33333211111


Q ss_pred             cccccccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         422 LTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      +.   ...-..+..+|++... +.+|+-+.+.+.++ ....|||+|.||.
T Consensus       186 ~~---~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS  232 (263)
T CHL00200        186 LD---KKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS  232 (263)
T ss_pred             cc---HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence            11   1111234455555433 44555577777766 5689999999995

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=90.88  E-value=0.43  Score=46.57  Aligned_cols=78  Identities=26%  Similarity=0.245  Sum_probs=49.9

Q ss_pred             CCCceEEEEEeccHHHHHHHHHCCCcEEEECcC-CCceEEEEecccC---Ccchhhhhcc---ccC--CccccccHHHHH
Q psy3862         158 YPKHVIIAGNVVTGEMVEELILSGADVIKVGIG-PGSVCTTRLKNKT---SDFFLIQFYS---CIP--QAGNVVTGEMVE  228 (671)
Q Consensus       158 ~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga-~G~~~~t~v~~~~---~~~~~i~~i~---~~p--~aGnV~t~~~a~  228 (671)
                      .+...+++..+.+.+.++.+.+.|+|+|.+..- ++..     ++..   ..+..+..+.   .+|  +.||| +.+.+.
T Consensus        92 ~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~  165 (196)
T cd00564          92 LGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPT-----KPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAA  165 (196)
T ss_pred             cCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCC-----CCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHH
Confidence            343445666667888899999999999988531 1100     0000   0111222221   245  68999 579999


Q ss_pred             HHHHcCCCEEEEc
Q psy3862         229 ELILSGADVIKVG  241 (671)
Q Consensus       229 ~li~aGAdgvkVG  241 (671)
                      .++++|||++-+|
T Consensus       166 ~~~~~Ga~~i~~g  178 (196)
T cd00564         166 EVLAAGADGVAVI  178 (196)
T ss_pred             HHHHcCCCEEEEe
Confidence            9999999999887

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=90.78  E-value=2.6  Score=41.87  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             HHHHHHHHHcCCeEE-EccCCC--HHHHHHHHhcCcccccceeeecc-cCh-hhHHHHHHcCCcEEEEcccccccccccc
Q psy3862         346 FEMAKHLAKHGLFTT-IHKYYT--LEEWKAFAVQNPDVIKHVADGGC-TSP-GDVAKAMGAGADFVMLGGMFAGHDQSGG  420 (671)
Q Consensus       346 ~~mA~~la~~Gglgv-ihr~~~--~e~~~~~v~~~~~~~~~v~~~~~-~~~-~~~~~l~~aG~d~i~id~~a~gh~~~~~  420 (671)
                      .+.+..+.+.|.=++ +|--.+  ..+..+.+++..  + .+..+.. .++ +++.+. ..++|++.+++...|.+....
T Consensus        70 ~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~g~tg~~~  145 (211)
T cd00429          70 ERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELG--M-KAGVALNPGTPVEVLEPY-LDEVDLVLVMSVNPGFGGQKF  145 (211)
T ss_pred             HHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCC--C-eEEEEecCCCCHHHHHHH-HhhCCEEEEEEECCCCCCccc
Confidence            445666667776666 775433  333333333221  1 1111111 122 334443 344999998844334433221


Q ss_pred             ccccccccccccccccccccC------c-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         421 ELTNIEYMFFPLVGDMNSYLG------G-VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~------~-~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ...     ....+..+++..+      . .++|| +...++.+++.+|||+|.||.
T Consensus       146 ~~~-----~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iivgs  195 (211)
T cd00429         146 IPE-----VLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVAGS  195 (211)
T ss_pred             CHH-----HHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEECH
Confidence            110     0001112222221      2 35677 466666678899999999985

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=90.54  E-value=1.2  Score=48.50  Aligned_cols=26  Identities=38%  Similarity=0.528  Sum_probs=20.7

Q ss_pred             eeccccCchhHHHHHHcCCcEEEECc
Q psy3862         444 VDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       444 i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      -.||+....++.+.|.+|||.|+||.
T Consensus       244 g~GGI~s~~Da~e~l~aGA~~V~v~t  269 (334)
T PRK07565        244 ATTGVHDAEDVIKMLLAGADVVMIAS  269 (334)
T ss_pred             EECCCCCHHHHHHHHHcCCCceeeeh
Confidence            36887666677778899999999984

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=90.52  E-value=0.57  Score=49.56  Aligned_cols=84  Identities=29%  Similarity=0.335  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      ....+++.|+..|...++.-.+.|.++++.+.++|+|+|-+|--.-    ..+++      .++.+. .+|  +.||| |
T Consensus       164 ~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~----e~lk~------~v~~~~~~ipi~AsGGI-~  232 (265)
T TIGR00078       164 IEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP----EEIKE------AVQLLKGRVLLEASGGI-T  232 (265)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH----HHHHH------HHHHhcCCCcEEEECCC-C
Confidence            3445666677676556677788899999999999999998764110    01110      011111 245  79999 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.++.++|||++=||
T Consensus       233 ~~ni~~~a~~Gvd~Isvg  250 (265)
T TIGR00078       233 LDNLEEYAETGVDVISSG  250 (265)
T ss_pred             HHHHHHHHHcCCCEEEeC
Confidence            999999999999999775

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=90.32  E-value=1.2  Score=45.93  Aligned_cols=112  Identities=16%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             HHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHh-CCCceEE---EEEecc---HHHHHHHHHCCCcEEEECcC
Q psy3862         121 GLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREM-YPKHVII---AGNVVT---GEMVEELILSGADVIKVGIG  190 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~-~P~~~li---~g~v~t---~e~a~~Li~AGaD~IvVdga  190 (671)
                      .+++.+....++--+++|...   |+...+.+.++.+++. .|...++   .+-...   ....+.++++|+|+|+.-++
T Consensus        79 e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG  158 (221)
T PRK00507         79 EAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG  158 (221)
T ss_pred             HHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence            444555542222224454332   2335555556666554 3443444   333222   24456688899999987653


Q ss_pred             CCceEEEEecccCCcchhhhhc-c----ccC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         191 PGSVCTTRLKNKTSDFFLIQFY-S----CIP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       191 ~G~~~~t~v~~~~~~~~~i~~i-~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      -+..        ..++..+..+ .    .++  ++|||-|.+++.+++++||+  |+|.
T Consensus       159 ~~~~--------gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~--riGt  207 (221)
T PRK00507        159 FSTG--------GATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGAT--RLGT  207 (221)
T ss_pred             CCCC--------CCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcc--eEcc
Confidence            2110        0011111111 1    123  79999999999999999999  4564

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=90.20  E-value=1.2  Score=48.15  Aligned_cols=172  Identities=23%  Similarity=0.248  Sum_probs=83.8

Q ss_pred             ecCCCccccHHHHHHHHHcCCeEE-eecCCCHHHH-------HHhhhcCcccccceEEec-CCChhhHHHHHHHHHhCCC
Q psy3862          61 AANMDTVGTFEMAKHLAKHGLFTT-IHKYYTLEEW-------KAFAVQNPDVIKHVAVSS-GISAKDLAGLKEILAALPE  131 (671)
Q Consensus        61 ~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~Eeq-------~~~i~~~p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~  131 (671)
                      -+||.++|+..+.....+.|+..+ .=...+.+..       ..++...|. ..|+.+.. |..++++.++.+++.. -+
T Consensus         2 LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~-~~p~~~Ql~g~~~~~~~~aa~~~~~-~~   79 (309)
T PF01207_consen    2 LAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPN-ERPLIVQLFGNDPEDLAEAAEIVAE-LG   79 (309)
T ss_dssp             E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC--T-TEEEEEE-S-HHHHHHHHHHHCC-TT
T ss_pred             ccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeeccccccc-ccceeEEEeeccHHHHHHHHHhhhc-cC
Confidence            479999999888886666665522 1112222221       111111221 13444432 4555555555555443 24


Q ss_pred             ceEEEeecc--------C--C-----CChHHHHHHHHHHHhC--CCceEEEEEec-----cHHHHHHHHHCCCcEEEECc
Q psy3862         132 IEYICLDVA--------N--G-----YTQTFVDFVRRIREMY--PKHVIIAGNVV-----TGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       132 ~d~Ivld~a--------~--G-----~~~~~~~~ik~lr~~~--P~~~li~g~v~-----t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .+.|-+|..        .  |     ++..+.+.++.+++..  |...++=-...     +.+.++.|.++|+|.|.|-+
T Consensus        80 ~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~  159 (309)
T PF01207_consen   80 FDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG  159 (309)
T ss_dssp             -SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred             CcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence            555555421        0  1     1345566677776654  44334322221     46889999999999998843


Q ss_pred             CCCceEEEEecccC---Ccchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862         190 GPGSVCTTRLKNKT---SDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG  241 (671)
Q Consensus       190 a~G~~~~t~v~~~~---~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG  241 (671)
                         ..    -++.+   .+...+..+.   .+|  .-|+|-|.+.+...++- |+|||.+|
T Consensus       160 ---Rt----~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig  213 (309)
T PF01207_consen  160 ---RT----RKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG  213 (309)
T ss_dssp             ---S-----TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred             ---Cc----hhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence               10    00111   2222222221   245  68999999999999976 99999999

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=90.17  E-value=4.1  Score=40.45  Aligned_cols=110  Identities=21%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             HHHHHHHHcCCeEEE-ccCCC---HHHHHHHHhcCcccccceee-ecccChhhHHHHHHcCCcEEEEcccccccc---cc
Q psy3862         347 EMAKHLAKHGLFTTI-HKYYT---LEEWKAFAVQNPDVIKHVAD-GGCTSPGDVAKAMGAGADFVMLGGMFAGHD---QS  418 (671)
Q Consensus       347 ~mA~~la~~Gglgvi-hr~~~---~e~~~~~v~~~~~~~~~v~~-~~~~~~~~~~~l~~aG~d~i~id~~a~gh~---~~  418 (671)
                      .++..+.+.|.=.++ |-.-+   ++++.+.+++..  ++...+ .+..++++..++.+.|+|++.+.-..++..   ..
T Consensus        68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~  145 (202)
T cd04726          68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWW  145 (202)
T ss_pred             HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCC
Confidence            466778888875555 54333   345555555421  122221 344456666667788999999841111111   11


Q ss_pred             ccccccccccccccccccccc--cCceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         419 GGELTNIEYMFFPLVGDMNSY--LGGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ..+.++          .+++.  ++=.++||+ ...++.+++++|||++-+|.
T Consensus       146 ~~~~i~----------~~~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGs  187 (202)
T cd04726         146 PEDDLK----------KVKKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVGR  187 (202)
T ss_pred             CHHHHH----------HHHhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEee
Confidence            112211          12211  111456774 56666678899999998885

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=90.13  E-value=1.4  Score=46.68  Aligned_cols=83  Identities=28%  Similarity=0.364  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--CccccccH
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVTG  224 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t~  224 (671)
                      ...+++.|+..|...++.-.+.+.++++.++++|+|+|-+|--.    ...+++      .++.+. .+|  +.||| |.
T Consensus       169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~----~e~l~~------~~~~~~~~ipi~AiGGI-~~  237 (268)
T cd01572         169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS----PEELRE------AVALLKGRVLLEASGGI-TL  237 (268)
T ss_pred             HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC----HHHHHH------HHHHcCCCCcEEEECCC-CH
Confidence            44566677777755677778889999999999999999886321    011110      011111 245  79999 89


Q ss_pred             HHHHHHHHcCCCEEEEc
Q psy3862         225 EMVEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG  241 (671)
                      +.+..+.++|+|++=||
T Consensus       238 ~ni~~~a~~Gvd~Iav~  254 (268)
T cd01572         238 ENIRAYAETGVDYISVG  254 (268)
T ss_pred             HHHHHHHHcCCCEEEEE
Confidence            99999999999999777

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=90.12  E-value=5.3  Score=42.16  Aligned_cols=124  Identities=20%  Similarity=0.112  Sum_probs=75.5

Q ss_pred             CCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-cccee-eecccChhhHHHHHHcCCcEEEEccccccccccc
Q psy3862         342 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVA-DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG  419 (671)
Q Consensus       342 tV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~-~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~  419 (671)
                      .-+..++...+++.|--|+|=--.++||..+++...++. +..+. .+-.++++++..+.+..-+||.+- +..|.+-..
T Consensus       103 ~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v-s~~GvTG~~  181 (258)
T PRK13111        103 QYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV-SRAGVTGAR  181 (258)
T ss_pred             hcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE-eCCCCCCcc
Confidence            346667899999999999999888898877777554331 33333 333445678888878778888764 223332111


Q ss_pred             cccccccccccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         420 GELTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ...   .......+..+|++... ++.|+-+.+.+.++.+..+||+|.||.
T Consensus       182 ~~~---~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGS  229 (258)
T PRK13111        182 SAD---AADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGS  229 (258)
T ss_pred             cCC---CccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcH
Confidence            111   01111234455665433 555666777777665444699999985

>cd00945 Aldolase_Class_I Class I aldolases

Probab=90.12  E-value=2.7  Score=40.94  Aligned_cols=162  Identities=18%  Similarity=0.130  Sum_probs=83.4

Q ss_pred             ccccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhc-CcccccceEEecCC------ChhhHHHHHHHHHhCCCceEEEee
Q psy3862          66 TVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQ-NPDVIKHVAVSSGI------SAKDLAGLKEILAALPEIEYICLD  138 (671)
Q Consensus        66 ~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~-~p~~~~~~~v~~G~------~~~d~~rl~~l~~a~~~~d~Ivld  138 (671)
                      .-...++++.+.+.|--|+.=.+    +..+.+.+ .+...-++.+.++.      +.+..+.++...+.  +++.+.+.
T Consensus        12 ~~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~--Gad~i~v~   85 (201)
T cd00945          12 LEDIAKLCDEAIEYGFAAVCVNP----GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL--GADEIDVV   85 (201)
T ss_pred             HHHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc--CCCEEEEe
Confidence            33446777877776644652212    22222221 11101133333332      22234556666666  77877664


Q ss_pred             ccCCC-----ChHHHHHHHHHHHhC-CCceEEEEEec----cHHH----HHHHHHCCCcEEEECcCCC----ce-EEEEe
Q psy3862         139 VANGY-----TQTFVDFVRRIREMY-PKHVIIAGNVV----TGEM----VEELILSGADVIKVGIGPG----SV-CTTRL  199 (671)
Q Consensus       139 ~a~G~-----~~~~~~~ik~lr~~~-P~~~li~g~v~----t~e~----a~~Li~AGaD~IvVdga~G----~~-~~t~v  199 (671)
                      ....+     .+...+.++++.+.. +...++.-+..    +.+.    ++.+.+.|+|.|+...+..    .. ....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i  165 (201)
T cd00945          86 INIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLM  165 (201)
T ss_pred             ccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHH
Confidence            33221     244556666665542 23455555542    3333    3345679999998765311    10 01111


Q ss_pred             cccCCcchhhhhccccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         200 KNKTSDFFLIQFYSCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       200 ~~~~~~~~~i~~i~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ++..++        .+|  +.||+-+.+.+..++.+||+|+-+|
T Consensus       166 ~~~~~~--------~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         166 KEAVGG--------RVGVKAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             HHhccc--------CCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence            111110        123  6888989999999999999998554

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=90.06  E-value=3  Score=42.98  Aligned_cols=65  Identities=29%  Similarity=0.265  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG  241 (671)
                      +.+.++.|.++|+|.|.+-+  ..|+       ....++.++..+.   .+|  +.|||.+.+.+.++++. |||++-||
T Consensus       151 ~~~~~~~l~~~G~d~i~v~~i~~~g~-------~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg  223 (243)
T cd04731         151 AVEWAKEVEELGAGEILLTSMDRDGT-------KKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAA  223 (243)
T ss_pred             HHHHHHHHHHCCCCEEEEeccCCCCC-------CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            34777889999999888733  2221       1112333333332   356  79999999999999997 99999998

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.97  E-value=1.4  Score=47.09  Aligned_cols=85  Identities=18%  Similarity=0.204  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c--cCCccccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C--IPQAGNVV  222 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~--~p~aGnV~  222 (671)
                      .+.+.+++.|+..|...+|.--+.+.|+++.++++|||+|-.|--.=.    .+++      .++++. .  +-++||| 
T Consensus       182 ~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnmspe----~l~~------av~~~~~~~~leaSGGI-  250 (290)
T PRK06559        182 SVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNMSLE----QIEQ------AITLIAGRSRIECSGNI-  250 (290)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhcCceEEEEECCC-
Confidence            456677777777775556666778999999999999999988741100    0110      011111 1  1278888 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+.+....|+|.|-+|
T Consensus       251 ~~~ni~~yA~tGVD~Is~g  269 (290)
T PRK06559        251 DMTTISRFRGLAIDYVSSG  269 (290)
T ss_pred             CHHHHHHHHhcCCCEEEeC
Confidence            8899999999999999777

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=89.90  E-value=3.1  Score=41.87  Aligned_cols=25  Identities=36%  Similarity=0.678  Sum_probs=20.3

Q ss_pred             eeccccCchhHHHHHHcCCcEEEECc
Q psy3862         444 VDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       444 i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ++|| +.+.++.+++++|||+|.||.
T Consensus       175 v~GG-I~~~nv~~l~~~GaD~vvvgS  199 (220)
T PRK05581        175 VDGG-INADNIKECAEAGADVFVAGS  199 (220)
T ss_pred             EECC-CCHHHHHHHHHcCCCEEEECh
Confidence            5677 567777778889999999985

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=89.84  E-value=2  Score=44.67  Aligned_cols=64  Identities=23%  Similarity=0.273  Sum_probs=35.4

Q ss_pred             HHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       398 l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      +.++|+|.|.||..-.|+..-.++.++.++..++.       + .+|.=|-|.+.+-++ .+.+|||+||||.
T Consensus       157 l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~-------i-pIIgNGgI~s~eda~e~l~~GAd~VmvgR  221 (231)
T TIGR00736       157 LVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFND-------K-IIIGNNSIDDIESAKEMLKAGADFVSVAR  221 (231)
T ss_pred             HHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCC-------C-cEEEECCcCCHHHHHHHHHhCCCeEEEcH
Confidence            36789999999732222210123333333332110       1 133434466766666 5689999999996

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=89.81  E-value=9.2  Score=40.60  Aligned_cols=25  Identities=20%  Similarity=0.201  Sum_probs=21.7

Q ss_pred             CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862         217 QAGNVVTGEMVEELILSG-ADVIKVG  241 (671)
Q Consensus       217 ~aGnV~t~~~a~~li~aG-AdgvkVG  241 (671)
                      +||-..+.+..+.+.++| ++++=++
T Consensus        16 aag~~~~~~~~~~~~~~g~~g~v~~~   41 (296)
T cd04740          16 ASGTFGFGEELSRVADLGKLGAIVTK   41 (296)
T ss_pred             CCCCCCCHHHHHHHHhcCCceEEEEC
Confidence            677777999999999999 9998777

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=89.74  E-value=5.7  Score=43.50  Aligned_cols=93  Identities=22%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             HHHHHHHHCCCcEEEECcCCC---ceEEEEecccCCcchhhhhc-cccC---Cc----cccccHHHHHHHHHcCCCEEEE
Q psy3862         172 EMVEELILSGADVIKVGIGPG---SVCTTRLKNKTSDFFLIQFY-SCIP---QA----GNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G---~~~~t~v~~~~~~~~~i~~i-~~~p---~a----GnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +-++.|.++|+|.|-+..+.|   .+..... ...++...+..+ ...+   .+    =|.++.+.++.+.++|+|.|||
T Consensus        29 ~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~-~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri  107 (337)
T PRK08195         29 AIARALDAAGVPVIEVTHGDGLGGSSFNYGF-GAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRV  107 (337)
T ss_pred             HHHHHHHHcCCCEEEeecCCCCCCccccCCC-CCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEE
Confidence            567789999999999964322   1100000 001111111111 1111   11    1456778999999999999999


Q ss_pred             cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcch
Q psy3862         241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII  279 (671)
Q Consensus       241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~  279 (671)
                      ..    -||          ....+.++.+.++++|..+.
T Consensus       108 ~~----~~~----------e~~~~~~~i~~ak~~G~~v~  132 (337)
T PRK08195        108 AT----HCT----------EADVSEQHIGLARELGMDTV  132 (337)
T ss_pred             EE----ecc----------hHHHHHHHHHHHHHCCCeEE
Confidence            84    222          23457888888888775433

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=89.71  E-value=0.6  Score=46.66  Aligned_cols=74  Identities=28%  Similarity=0.291  Sum_probs=48.0

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEECc-CCCceEEEEecccCC-c--chhhhhc----cccC--CccccccHHHHHHHH
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVGI-GPGSVCTTRLKNKTS-D--FFLIQFY----SCIP--QAGNVVTGEMVEELI  231 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVdg-a~G~~~~t~v~~~~~-~--~~~i~~i----~~~p--~aGnV~t~~~a~~li  231 (671)
                      .+++..+.|.+.+..+.+.|+|+|.++. -++.     .++..+ .  +..+..+    ..+|  +.||| +.+.+..++
T Consensus       105 ~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~  178 (212)
T PRK00043        105 AIIGLSTHTLEEAAAALAAGADYVGVGPIFPTP-----TKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVL  178 (212)
T ss_pred             CEEEEeCCCHHHHHHHhHcCCCEEEECCccCCC-----CCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH
Confidence            4555566788888888999999998753 1110     001000 0  1122222    1245  79999 789999999


Q ss_pred             HcCCCEEEEc
Q psy3862         232 LSGADVIKVG  241 (671)
Q Consensus       232 ~aGAdgvkVG  241 (671)
                      ++|||++-+|
T Consensus       179 ~~Ga~gv~~g  188 (212)
T PRK00043        179 EAGADGVAVV  188 (212)
T ss_pred             HcCCCEEEEe
Confidence            9999999777

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=89.69  E-value=9  Score=41.63  Aligned_cols=25  Identities=20%  Similarity=0.169  Sum_probs=21.5

Q ss_pred             Ccccc-ccHHHHHHHHHcCCCEEEEc
Q psy3862         217 QAGNV-VTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 ~aGnV-~t~~~a~~li~aGAdgvkVG  241 (671)
                      ++|+. .+++..+.+.++|+.+|-++
T Consensus        18 ASg~~~~~~e~~~~~~~~G~Gavv~k   43 (325)
T cd04739          18 SASPLSRNLDNIRRLEDAGAGAIVLP   43 (325)
T ss_pred             CCcCCCCCHHHHHHHHHCCCcEEEec
Confidence            56888 68899999999999999877

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.55  E-value=1.6  Score=46.55  Aligned_cols=84  Identities=25%  Similarity=0.288  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      +.+.+++.|+..|...++-.-+.|.++++.++++|+|+|-+|--.-    .++++      .++++. ..|  ++||| |
T Consensus       180 i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s~----e~l~~------av~~~~~~~~leaSGGI-~  248 (281)
T PRK06106        180 VREAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNMTP----DTLRE------AVAIVAGRAITEASGRI-T  248 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCCH----HHHHH------HHHHhCCCceEEEECCC-C
Confidence            5567777777777555666677899999999999999998874221    01110      011111 122  78888 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.+..+.|+|.+-+|
T Consensus       249 ~~ni~~yA~tGVD~Is~G  266 (281)
T PRK06106        249 PETAPAIAASGVDLISVG  266 (281)
T ss_pred             HHHHHHHHhcCCCEEEeC
Confidence            899999999999999777

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=89.39  E-value=3.8  Score=42.61  Aligned_cols=121  Identities=19%  Similarity=0.251  Sum_probs=70.4

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE-E------------------
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG-N------------------  167 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g-~------------------  167 (671)
                      |+.++-|+.  +.+.+++++..  +++.+++....-.   -.+.++++.+.|+.-.++.. .                  
T Consensus        76 pv~~~GGi~--s~~~~~~~l~~--Ga~~Viigt~~l~---~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~  148 (253)
T PRK02083         76 PLTVGGGIR--SVEDARRLLRA--GADKVSINSAAVA---NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR  148 (253)
T ss_pred             CEEeeCCCC--CHHHHHHHHHc--CCCEEEEChhHhh---CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence            455544553  34555566665  6777777654211   12344555555642112111 1                  


Q ss_pred             ----eccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH-cCC
Q psy3862         168 ----VVTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL-SGA  235 (671)
Q Consensus       168 ----v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~-aGA  235 (671)
                          ....+.++.+.+.|+|.|.+-.  ..|.       ...+++.++..+.   .+|  ++|||.+.+-++.++. .||
T Consensus       149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~-------~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~  221 (253)
T PRK02083        149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDGT-------KNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGA  221 (253)
T ss_pred             eecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC-------CCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCc
Confidence                1124677889999999886632  1121       1112344433332   356  7999999999999997 599


Q ss_pred             CEEEEc
Q psy3862         236 DVIKVG  241 (671)
Q Consensus       236 dgvkVG  241 (671)
                      ||+-+|
T Consensus       222 ~gvivg  227 (253)
T PRK02083        222 DAALAA  227 (253)
T ss_pred             cEEeEh
Confidence            999998

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.34  E-value=1.7  Score=46.41  Aligned_cols=87  Identities=25%  Similarity=0.273  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccC--CcchhhhhccccCCccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKT--SDFFLIQFYSCIPQAGN  220 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~--~~~~~i~~i~~~p~aGn  220 (671)
                      .+.+.++.+|+..|... |.--+.+.++++.++++|+|+|-+|.-.-..   +...++...  ++.       .+-++||
T Consensus       168 ~i~~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~-------~leaSGG  239 (278)
T PRK08385        168 PLEEAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGLRERV-------KIEVSGG  239 (278)
T ss_pred             HHHHHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCE-------EEEEECC
Confidence            45566666666556533 4446678999999999999999888632110   001111110  111       0127999


Q ss_pred             cccHHHHHHHHHcCCCEEEEc
Q psy3862         221 VVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG  241 (671)
                      | |.+.+.+..++|+|.+-+|
T Consensus       240 I-~~~ni~~yA~tGvD~Is~g  259 (278)
T PRK08385        240 I-TPENIEEYAKLDVDVISLG  259 (278)
T ss_pred             C-CHHHHHHHHHcCCCEEEeC
Confidence            9 9999999999999999777

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=89.29  E-value=3.9  Score=43.98  Aligned_cols=111  Identities=23%  Similarity=0.322  Sum_probs=64.6

Q ss_pred             CceEEEeeccCCCC------------------------hHHHHHHHHHHHhC----CCceEEEEEe-----cc----HHH
Q psy3862         131 EIEYICLDVANGYT------------------------QTFVDFVRRIREMY----PKHVIIAGNV-----VT----GEM  173 (671)
Q Consensus       131 ~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~----P~~~li~g~v-----~t----~e~  173 (671)
                      +.|.|-++.+||+.                        +-+.+.++.+|+..    |...++-..-     .+    .+.
T Consensus       154 GfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~l  233 (327)
T cd02803         154 GFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEI  233 (327)
T ss_pred             CCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHH
Confidence            77888887777651                        11355666677654    2223333211     12    345


Q ss_pred             HHHHHHCCCcEEEECcCCCceEEEEec----ccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-CCCEEEEc
Q psy3862         174 VEELILSGADVIKVGIGPGSVCTTRLK----NKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-GADVIKVG  241 (671)
Q Consensus       174 a~~Li~AGaD~IvVdga~G~~~~t~v~----~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-GAdgvkVG  241 (671)
                      ++.|.++|+|.|.+.............    .....+..+..++   .+|  +.||+.|.+.+..+++. |||.|-+|
T Consensus       234 a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig  311 (327)
T cd02803         234 AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG  311 (327)
T ss_pred             HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence            778899999999886533211110000    0001122222232   356  68999999999999998 79998766

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=89.18  E-value=11  Score=39.93  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             cCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         449 TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       449 v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      +++.++++.+..=.++..+|| |+| .-|.+++.
T Consensus       183 ~vp~~la~~It~~l~IPtIGI-GaG-~~cDGQvL  214 (261)
T PF02548_consen  183 CVPAELAKAITEALSIPTIGI-GAG-PGCDGQVL  214 (261)
T ss_dssp             SBBHHHHHHHHHHSSS-EEEE-SS--STSSEEEE
T ss_pred             cCHHHHHHHHHHhCCCCEEec-CCC-CCCCceEE
Confidence            468888888754458888996 999 77888753

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.16  E-value=6  Score=40.88  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=24.0

Q ss_pred             CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 ~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ++|||.+.+.++.++.+||+++-||
T Consensus        78 ~gGGIrs~edv~~l~~~G~~~vivG  102 (228)
T PRK04128         78 VGGGLRTYESIKDAYEIGVENVIIG  102 (228)
T ss_pred             EcCCCCCHHHHHHHHHCCCCEEEEC
Confidence            7999999999999999999999888

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.14  E-value=8.4  Score=40.19  Aligned_cols=62  Identities=26%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             HHHHHHHHHCCCcEE-EE--CcC-CCceEEEEecccCCcchhhhhcc--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVI-KV--GIG-PGSVCTTRLKNKTSDFFLIQFYS--CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~I-vV--dga-~G~~~~t~v~~~~~~~~~i~~i~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+.+.+.|+|-+ ++  |++ .|+.         .++.++..+.  .+|  ++|||-+.+.++.++++|||-|-+|
T Consensus        33 ~~~A~~~~~~ga~~lhivDLd~a~~g~~---------~n~~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvig  102 (241)
T PRK14114         33 AELVEKLIEEGFTLIHVVDLSKAIENSV---------ENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS  102 (241)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCcccCCc---------chHHHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence            377888889999954 23  332 2321         2333333331  245  7999999999999999999987666

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=88.91  E-value=3.4  Score=44.60  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=17.6

Q ss_pred             eccccCchhHHH-HH-HcCCcEEEECc
Q psy3862         445 DGGCTSPGDVAK-AM-GAGADFVMLGG  469 (671)
Q Consensus       445 ~gG~v~t~~~a~-~l-~aGAd~V~vG~  469 (671)
                      .|| +.+.+-+. ++ ..|||+||+|.
T Consensus       198 nGg-I~~~~da~~~l~~~gad~VmigR  223 (319)
T TIGR00737       198 NGD-IFSPEDAKAMLETTGCDGVMIGR  223 (319)
T ss_pred             eCC-CCCHHHHHHHHHhhCCCEEEECh
Confidence            455 56666655 66 68999999986

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=88.90  E-value=1.9  Score=45.08  Aligned_cols=68  Identities=29%  Similarity=0.276  Sum_probs=37.8

Q ss_pred             hhhHHHHHHcCCcEEEEcccccc--ccccccccccccccccccccccccccC-c-eeeccccCchhHHHHHHcCCcEEEE
Q psy3862         392 PGDVAKAMGAGADFVMLGGMFAG--HDQSGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       392 ~~~~~~l~~aG~d~i~id~~a~g--h~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      +....++.++|++++.--|.--|  .....-+.++          .+++..+ . ++.||+-.+.++.++|+.|||+|.|
T Consensus       134 ~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~----------~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV  203 (248)
T cd04728         134 PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR----------IIIERADVPVIVDAGIGTPSDAAQAMELGADAVLL  203 (248)
T ss_pred             HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH----------HHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            35556667889999976333333  2111112222          2222211 1 4466654445555589999999999


Q ss_pred             Cc
Q psy3862         468 GG  469 (671)
Q Consensus       468 G~  469 (671)
                      |.
T Consensus       204 ~S  205 (248)
T cd04728         204 NT  205 (248)
T ss_pred             Ch
Confidence            85

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=88.84  E-value=2  Score=45.52  Aligned_cols=53  Identities=9%  Similarity=0.100  Sum_probs=34.1

Q ss_pred             cHHHHHHHHHcCCCEEEEcccCCCccccceecccCcch-hhhHHHHHHHhhhcCC
Q psy3862         223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQ-FSAVLECADAAHGLGG  276 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~  276 (671)
                      ..+++..++++|++.+++-+...- ...+...+-...+ +.-+.++.+.|+++|.
T Consensus        80 ~~~~~~~a~~~g~~~i~i~~~~sd-~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~  133 (273)
T cd07941          80 EDPNLQALLEAGTPVVTIFGKSWD-LHVTEALGTTLEENLAMIRDSVAYLKSHGR  133 (273)
T ss_pred             chHHHHHHHhCCCCEEEEEEcCCH-HHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence            446788899999999988754322 2234445544443 3456778888887653

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=88.75  E-value=0.35  Score=61.19  Aligned_cols=105  Identities=23%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             cCCCHHHHHHHHhcCccccc----ceeeecccChhhHHH-HHHcCCcEEEEccccc----------ccccccccc-cccc
Q psy3862         363 KYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAK-AMGAGADFVMLGGMFA----------GHDQSGGEL-TNIE  426 (671)
Q Consensus       363 r~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~-l~~aG~d~i~id~~a~----------gh~~~~~~~-~~~~  426 (671)
                      -.||+||++..|.++++.-+    .++.+....-.+++. ..+||+|+|+|||.--          -|.--+.++ +...
T Consensus       976 diySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~ 1055 (1485)
T PRK11750        976 DIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAET 1055 (1485)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHH
Confidence            35688998888876544321    222222222244553 4689999999996331          121111111 0000


Q ss_pred             ccccccccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         427 YMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       427 ~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                      . ++=....+|+.+.=+.+||.....|+++++..|||.|-+|
T Consensus      1056 ~-~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750       1056 H-QALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFG 1096 (1485)
T ss_pred             H-HHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccc
Confidence            0 0001112233333367899999999999999999998766

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=88.65  E-value=7  Score=40.49  Aligned_cols=120  Identities=19%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE------Eec-------c---
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG------NVV-------T---  170 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g------~v~-------t---  170 (671)
                      |+.++-|+  +..+.+++++.+  +++-+++.++--   .-.++++++.+.||.- ++.+      .+.       +   
T Consensus        78 pi~vGGGI--rs~e~v~~~l~~--Ga~kvvigt~a~---~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~  149 (234)
T PRK13587         78 DIEVGGGI--RTKSQIMDYFAA--GINYCIVGTKGI---QDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELN  149 (234)
T ss_pred             eEEEcCCc--CCHHHHHHHHHC--CCCEEEECchHh---cCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCC
Confidence            45554444  456778888887  778888765421   2244566666667642 2222      110       1   


Q ss_pred             -HHHHHHHHHCCCcEEEE-Cc-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 -GEMVEELILSGADVIKV-GI-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 -~e~a~~Li~AGaD~IvV-dg-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .+-++.+.+.|+..+.+ |. ..|+       ..-+++.++..+.   .+|  ++||+.+.+.++.++++|++++-||
T Consensus       150 ~~~~~~~~~~~g~~~ii~tdi~~dGt-------~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG  221 (234)
T PRK13587        150 LFSFVRQLSDIPLGGIIYTDIAKDGK-------MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG  221 (234)
T ss_pred             HHHHHHHHHHcCCCEEEEecccCcCC-------CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence             46677888889875543 32 2221       1124554444442   346  7999999999999999999999998

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=88.65  E-value=3.7  Score=43.52  Aligned_cols=40  Identities=15%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             cHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862         223 TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG  276 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~  276 (671)
                      ..+-...+.++|+|.||+......              +.-+.++.+.++++|.
T Consensus        93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~  132 (275)
T cd07937          93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGK  132 (275)
T ss_pred             HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCC
Confidence            345566677889999999754433              5667778888887663

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK08227 autoinducer 2 aldolase; Validated

Probab=88.49  E-value=2.3  Score=45.00  Aligned_cols=46  Identities=15%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             HHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862         227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS  280 (671)
Q Consensus       227 a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~  280 (671)
                      +++++++|||+|-+-+-+||-   .+     .-|+.-+.++++.|+++|.++++
T Consensus       100 VeeAvrlGAdAV~~~v~~Gs~---~E-----~~~l~~l~~v~~ea~~~G~Plla  145 (264)
T PRK08227        100 MEDAVRLNACAVAAQVFIGSE---YE-----HQSIKNIIQLVDAGLRYGMPVMA  145 (264)
T ss_pred             HHHHHHCCCCEEEEEEecCCH---HH-----HHHHHHHHHHHHHHHHhCCcEEE
Confidence            567899999999999999952   11     45788888999999987765554

>PRK04302 triosephosphate isomerase; Provisional

Probab=88.32  E-value=2.9  Score=42.81  Aligned_cols=133  Identities=22%  Similarity=0.288  Sum_probs=73.7

Q ss_pred             CcceEecCCCCC-----CCHHHHHHHHHcCCeEEEc----cCCCHHHHHHHHhcCccc-ccceeeecccChhhHHHHHHc
Q psy3862         332 GVPIIAANMDTV-----GTFEMAKHLAKHGLFTTIH----KYYTLEEWKAFAVQNPDV-IKHVADGGCTSPGDVAKAMGA  401 (671)
Q Consensus       332 ~iPiIaa~MDtV-----~~~~mA~~la~~Gglgvih----r~~~~e~~~~~v~~~~~~-~~~v~~~~~~~~~~~~~l~~a  401 (671)
                      ++|+++=++|..     |....+..+...|.=++|=    |..+.++..+++....+. +..+.  ...+.++...+.+.
T Consensus        56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~--~v~~~~~~~~~~~~  133 (223)
T PRK04302         56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV--CVNNPETSAAAAAL  133 (223)
T ss_pred             CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE--EcCCHHHHHHHhcC
Confidence            689999998884     3444577777777766664    347777766666543321 11121  11134666666778


Q ss_pred             CCcEEEEccc-ccccccccc-ccccccccccccccccccccC--ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         402 GADFVMLGGM-FAGHDQSGG-ELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       402 G~d~i~id~~-a~gh~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      +.|+|.+-.. +.|.....- ..-..++.   .++.+++...  .++.||-|.+.+.++ ++..|||+|.||.
T Consensus       134 ~~~~I~~~p~~~igt~~~~~~~~~~~i~~---~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGs  203 (223)
T PRK04302        134 GPDYVAVEPPELIGTGIPVSKAKPEVVED---AVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLAS  203 (223)
T ss_pred             CCCEEEEeCccccccCCCCCcCCHHHHHH---HHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence            9999987532 233321000 00000111   1122333221  255566677888777 5679999999984

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=87.99  E-value=1.8  Score=42.71  Aligned_cols=68  Identities=32%  Similarity=0.413  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ..+.+.+.+++  ++|.|-+|..  .++.+.+.++.++...|...+.+....+.+.+....+.|||+|.+.+
T Consensus        89 ~~ee~~ea~~~--g~d~I~lD~~--~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~  156 (169)
T PF01729_consen   89 NLEEAEEALEA--GADIIMLDNM--SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGS  156 (169)
T ss_dssp             SHHHHHHHHHT--T-SEEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred             CHHHHHHHHHh--CCCEEEecCc--CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence            46778888888  7899999955  46777778887777788877777666789999999999999997743

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=87.93  E-value=8.8  Score=39.97  Aligned_cols=123  Identities=15%  Similarity=0.127  Sum_probs=65.6

Q ss_pred             CceEEEeeccCC------CChHHHHHHHHHHHhCCCceEEEEE-eccHHHHHHHHHCCCcEEEECcCC-CceEEEEeccc
Q psy3862         131 EIEYICLDVANG------YTQTFVDFVRRIREMYPKHVIIAGN-VVTGEMVEELILSGADVIKVGIGP-GSVCTTRLKNK  202 (671)
Q Consensus       131 ~~d~Ivld~a~G------~~~~~~~~ik~lr~~~P~~~li~g~-v~t~e~a~~Li~AGaD~IvVdga~-G~~~~t~v~~~  202 (671)
                      +.++|-++.-..      ++...++..+.|.+.   +..+-.- -.+.-.+++|+++|+.+|---+++ |++      +-
T Consensus        90 ~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e---GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg------~G  160 (247)
T PF05690_consen   90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE---GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG------RG  160 (247)
T ss_dssp             S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT---T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---------
T ss_pred             CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC---CCEEeecCCCCHHHHHHHHHCCCCEEEecccccccC------cC
Confidence            556665543321      123344445555432   3344332 357899999999999999876643 111      00


Q ss_pred             CCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHHHHh
Q psy3862         203 TSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECADAA  271 (671)
Q Consensus       203 ~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~  271 (671)
                      ..+.+.+..+-   .+|  +-+||++...+..++++|||||.|.        |-+ +-...|  +..|...+.++-
T Consensus       161 i~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN--------TAi-A~A~dPv~MA~Af~~AV~AG  227 (247)
T PF05690_consen  161 IQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN--------TAI-AKAKDPVAMARAFKLAVEAG  227 (247)
T ss_dssp             SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES--------HHH-HTSSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh--------hHH-hccCCHHHHHHHHHHHHHHH
Confidence            11222222331   356  6889999999999999999999998        443 555666  555555555443

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=87.91  E-value=1.7  Score=45.56  Aligned_cols=95  Identities=17%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccc-cC----CccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC-IP----QAGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~-~p----~aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                      +-++.|.++|+|.|.+...+ ..      +  .+...++.+.. .+    .+-.-.+.+++..+.++|++.+++.+...-
T Consensus        24 ~i~~~L~~~Gv~~iE~g~p~-~~------~--~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~   94 (259)
T cd07939          24 AIARALDEAGVDEIEVGIPA-MG------E--EEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSD   94 (259)
T ss_pred             HHHHHHHHcCCCEEEEecCC-CC------H--HHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCH
Confidence            55677888899998774211 00      0  00011111110 11    233335788899999999999999862221


Q ss_pred             ccccceecccCcch-hhhHHHHHHHhhhcCC
Q psy3862         247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLGG  276 (671)
Q Consensus       247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~  276 (671)
                      .. -+...+..+.+ +..+.++.+.|+++|.
T Consensus        95 ~~-~~~~~~~~~~~~~~~~~~~i~~a~~~G~  124 (259)
T cd07939          95 IH-LAHKLGKDRAWVLDQLRRLVGRAKDRGL  124 (259)
T ss_pred             HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence            11 11233444444 3577788888887653

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=87.77  E-value=8.1  Score=40.92  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             ccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc------hhhhHHHHHHHhhhcCCcchhhhhhccceeec
Q psy3862         218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP------QFSAVLECADAAHGLGGHIISFLTAMAQKIIN  291 (671)
Q Consensus       218 aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  291 (671)
                      .=|.-|+-.|+.+-++|+|.+-||=-.|       ..-.|+|      .=..++.+...+++..-.              
T Consensus        19 m~tayD~~sA~i~~~aG~d~ilvGdSlg-------m~~lG~~~t~~vtldem~~h~~aV~rg~~~~--------------   77 (263)
T TIGR00222        19 AITAYDYSFAKLFADAGVDVILVGDSLG-------MVVLGHDSTLPVTVADMIYHTAAVKRGAPNC--------------   77 (263)
T ss_pred             EEeccCHHHHHHHHHcCCCEEEECccHh-------HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCc--------------
Confidence            4456678888888899999999993333       3334543      333445555555432111              


Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC--HHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT--LEE  369 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~--~e~  369 (671)
                                                          -+-.++|+.|=. |.-.-.+-|..+-+..|.-.++---.  ..+
T Consensus        78 ------------------------------------~vv~DmPf~sy~-~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~  120 (263)
T TIGR00222        78 ------------------------------------LIVTDLPFMSYA-TPEQALKNAARVMQETGANAVKLEGGEWLVE  120 (263)
T ss_pred             ------------------------------------eEEeCCCcCCCC-CHHHHHHHHHHHHHHhCCeEEEEcCcHhHHH
Confidence                                                112356766432 32233445777777777777774332  223


Q ss_pred             HHHHHhcC--ccc-----cc-ceeeec-----ccChhh-------HHHHHHcCCcEEEEccccccccccccccccccccc
Q psy3862         370 WKAFAVQN--PDV-----IK-HVADGG-----CTSPGD-------VAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMF  429 (671)
Q Consensus       370 ~~~~v~~~--~~~-----~~-~v~~~~-----~~~~~~-------~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~  429 (671)
                      .++.+.+.  |-+     .+ .+..-+     +.++++       ...+.+||+|.|++-                    
T Consensus       121 ~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE--------------------  180 (263)
T TIGR00222       121 TVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE--------------------  180 (263)
T ss_pred             HHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc--------------------
Confidence            33333321  211     11 122222     223322       233357999999986                    


Q ss_pred             cccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         430 FPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       430 ~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                                         .++.+.++.+..-.++-.+|| |+| .-|.+++.
T Consensus       181 -------------------~vp~~~a~~It~~l~iP~iGI-GaG-~~~dGQvl  212 (263)
T TIGR00222       181 -------------------CVPVELAAKITEALAIPVIGI-GAG-NVCDGQIL  212 (263)
T ss_pred             -------------------CCcHHHHHHHHHhCCCCEEee-ccC-CCCCceee
Confidence                               234577777766667889996 999 88988763

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=87.67  E-value=2.1  Score=45.56  Aligned_cols=87  Identities=17%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV  222 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~  222 (671)
                      .+.+.++.+|+..|. .++.--+.+.++++.++++|+|+|-.|.-.-..   +...++...+.+       .+-++||| 
T Consensus       174 ~i~~av~~~r~~~~~-~kIeVEv~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~-------~leasGGI-  244 (277)
T TIGR01334       174 DWGGAIGRLKQTAPE-RKITVEADTIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIP-------TLAAAGGI-  244 (277)
T ss_pred             cHHHHHHHHHHhCCC-CCEEEECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCE-------EEEEECCC-
Confidence            466777777777775 345556679999999999999999988422110   011111111111       01279998 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+.+...+|+|.+-+|
T Consensus       245 ~~~ni~~ya~~GvD~is~g  263 (277)
T TIGR01334       245 NPENIADYIEAGIDLFITS  263 (277)
T ss_pred             CHHHHHHHHhcCCCEEEeC
Confidence            8899999999999999776

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=87.65  E-value=13  Score=36.66  Aligned_cols=73  Identities=26%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             ccChhhHHHHHHcCCcEEEEcccccccc--c--c--ccccccccccccccccccccccCceeeccccCchhHHHHHHcCC
Q psy3862         389 CTSPGDVAKAMGAGADFVMLGGMFAGHD--Q--S--GGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGA  462 (671)
Q Consensus       389 ~~~~~~~~~l~~aG~d~i~id~~a~gh~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGA  462 (671)
                      .-+.++..+..+.|+|+++++-+.+--+  .  .  .++.++.+...+|.       .+-+..|| +...++.+++.+|+
T Consensus       103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~-------~pv~a~GG-I~~~~~~~~~~~G~  174 (196)
T TIGR00693       103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSID-------IPIVAIGG-ITLENAAEVLAAGA  174 (196)
T ss_pred             CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC-------CCEEEECC-cCHHHHHHHHHcCC
Confidence            3456777777889999999863322111  1  1  12332222221110       11134566 46666666789999


Q ss_pred             cEEEECc
Q psy3862         463 DFVMLGG  469 (671)
Q Consensus       463 d~V~vG~  469 (671)
                      |+|-+|.
T Consensus       175 ~gva~~~  181 (196)
T TIGR00693       175 DGVAVVS  181 (196)
T ss_pred             CEEEEhH
Confidence            9999885

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=87.39  E-value=1.1  Score=46.47  Aligned_cols=66  Identities=27%  Similarity=0.259  Sum_probs=37.8

Q ss_pred             HHHHHcCCcEEEEcccccccccccccccccccccccccccccccc--CceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         396 AKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--GGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       396 ~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .+|.++|+..++-=|+--|-..-..+..        .+..+++.+  +=+|++|+=.+-+.+++|+.|+|+|+|..
T Consensus       138 krL~d~GcaavMPlgsPIGSg~Gi~n~~--------~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNT  205 (247)
T PF05690_consen  138 KRLEDAGCAAVMPLGSPIGSGRGIQNPY--------NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNT  205 (247)
T ss_dssp             HHHHHTT-SEBEEBSSSTTT---SSTHH--------HHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred             HHHHHCCCCEEEecccccccCcCCCCHH--------HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence            5568899999987765544432222210        111122222  22689999888899999999999999985

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=87.39  E-value=5  Score=44.01  Aligned_cols=138  Identities=22%  Similarity=0.289  Sum_probs=90.4

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      +.+.++.++  +.+.+=+...   ...-.+.++.+++.-| .++++--..+...|...+++|+|.|.+            
T Consensus        46 ~Qi~~L~~a--GceiVRvav~---~~~~a~al~~I~~~~~-iPlvADIHFd~~lAl~a~~~G~~~iRI------------  107 (360)
T PRK00366         46 AQIKRLARA--GCEIVRVAVP---DMEAAAALPEIKKQLP-VPLVADIHFDYRLALAAAEAGADALRI------------  107 (360)
T ss_pred             HHHHHHHHc--CCCEEEEccC---CHHHHHhHHHHHHcCC-CCEEEecCCCHHHHHHHHHhCCCEEEE------------
Confidence            455666666  6665544322   2455666777776554 456665557889999999999999966            


Q ss_pred             cccCCcchhhhhccccCCcccccc-HHHHHHHHHcCC---CEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcC
Q psy3862         200 KNKTSDFFLIQFYSCIPQAGNVVT-GEMVEELILSGA---DVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG  275 (671)
Q Consensus       200 ~~~~~~~~~i~~i~~~p~aGnV~t-~~~a~~li~aGA---dgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~  275 (671)
                                       -=||+.. .+..+.++++-=   -.+|+|+..||.- -+...--|.|...|..|.|-.-    
T Consensus       108 -----------------NPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~-~~~~~~yg~~t~eamveSAl~~----  165 (360)
T PRK00366        108 -----------------NPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLE-KDLLEKYGEPTPEALVESALRH----  165 (360)
T ss_pred             -----------------CCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccCh-HHHHHHcCCCCHHHHHHHHHHH----
Confidence                             1367766 666666554321   2689999999985 5555556778777777766321    


Q ss_pred             CcchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862         276 GHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK  310 (671)
Q Consensus       276 ~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~  310 (671)
                                   +..-..++|+|+.|-=|-|++.
T Consensus       166 -------------~~~le~~~f~~iviS~KsS~v~  187 (360)
T PRK00366        166 -------------AKILEELGFDDIKISVKASDVQ  187 (360)
T ss_pred             -------------HHHHHHCCCCcEEEEEEcCCHH
Confidence                         1123468899998876666554

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=87.36  E-value=1.7  Score=45.90  Aligned_cols=26  Identities=35%  Similarity=0.330  Sum_probs=18.5

Q ss_pred             eeccccCchhHHHHHHcCCcEEEECc
Q psy3862         444 VDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       444 i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ..||+-...++.+.+.+|||.|++|.
T Consensus       248 a~GGI~~~~da~~~l~~GAd~V~vg~  273 (289)
T cd02810         248 GVGGIDSGEDVLEMLMAGASAVQVAT  273 (289)
T ss_pred             EECCCCCHHHHHHHHHcCccHheEcH
Confidence            34664334555667899999999985

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=87.35  E-value=1.9  Score=45.91  Aligned_cols=68  Identities=22%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ..+.+.+.+++  ++|.|-+|..  .++.+.+.++.++..+|+..+.+....|++.+++..+.|||+|++..
T Consensus       191 tleea~~A~~~--GaDiI~LDn~--~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~  258 (273)
T PRK05848        191 SLEEAKNAMNA--GADIVMCDNM--SVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGS  258 (273)
T ss_pred             CHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence            35566666666  7788888744  45666667765544567766655433499999999999999998743

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=87.31  E-value=5.2  Score=45.78  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=26.8

Q ss_pred             HHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcch
Q psy3862         227 VEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII  279 (671)
Q Consensus       227 a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~  279 (671)
                      ++.+.++|+|.+++.....-              +.-+..+.+++++.|.++.
T Consensus       101 v~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~  139 (467)
T PRK14041        101 VKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQ  139 (467)
T ss_pred             HHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEE
Confidence            67788999999999854332              3445666777877765443

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=87.27  E-value=2  Score=45.25  Aligned_cols=94  Identities=13%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                      +-++.|.++|+|.|-+.. +..+.     ...+.+....        ....+......+++..++++|++.|++-+...-
T Consensus        26 ~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~--------~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~   96 (262)
T cd07948          26 EIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLK--------AKILTHIRCHMDDARIAVETGVDGVDLVFGTSP   96 (262)
T ss_pred             HHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCC--------CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCH
Confidence            567788999999998864 22210     0001100000        000344578899999999999999988763221


Q ss_pred             ccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862         247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLG  275 (671)
Q Consensus       247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~  275 (671)
                      ... +...+-.+.+ +..+.++.+.|+++|
T Consensus        97 ~~~-~~~~~~~~~e~~~~~~~~i~~a~~~G  125 (262)
T cd07948          97 FLR-EASHGKSITEIIESAVEVIEFVKSKG  125 (262)
T ss_pred             HHH-HHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence            111 1123444445 555667777777654

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=87.26  E-value=10  Score=41.45  Aligned_cols=90  Identities=21%  Similarity=0.233  Sum_probs=51.5

Q ss_pred             HHHHHHHHCCCcEEEECcCCC---ceEEEEe-cccCCcchhhhhc-cccC-------CccccccHHHHHHHHHcCCCEEE
Q psy3862         172 EMVEELILSGADVIKVGIGPG---SVCTTRL-KNKTSDFFLIQFY-SCIP-------QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G---~~~~t~v-~~~~~~~~~i~~i-~~~p-------~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      +-++.|.++|+|.|-+..+.|   ++.  .. ....++...+..+ ..++       .--|+++.+.++.+.++|+|.||
T Consensus        28 ~ia~~Ld~aGV~~IEvg~g~gl~g~s~--~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~ir  105 (333)
T TIGR03217        28 AIAAALDEAGVDAIEVTHGDGLGGSSF--NYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVR  105 (333)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCccc--cCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEE
Confidence            567789999999999863322   110  00 0001111111111 1111       12356788999999999999999


Q ss_pred             EcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862         240 VGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH  277 (671)
Q Consensus       240 VG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~  277 (671)
                      |...    ||          ....+.+..+.++++|..
T Consensus       106 i~~~----~~----------e~d~~~~~i~~ak~~G~~  129 (333)
T TIGR03217       106 VATH----CT----------EADVSEQHIGMARELGMD  129 (333)
T ss_pred             EEec----cc----------hHHHHHHHHHHHHHcCCe
Confidence            8852    22          122466778888876643

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=87.09  E-value=7.5  Score=40.82  Aligned_cols=62  Identities=16%  Similarity=0.104  Sum_probs=40.8

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc---cccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY---SCIP--QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i---~~~p--~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      .+.|+...++||++|-|.+-+-+-        ..++..+..+   ..+|  .=+.|.+..|...+..+|||+|-.
T Consensus        64 ~~~A~~y~~~GA~aISVlTe~~~F--------~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL  130 (247)
T PRK13957         64 VQIAKTYETLGASAISVLTDQSYF--------GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL  130 (247)
T ss_pred             HHHHHHHHHCCCcEEEEEcCCCcC--------CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence            477888999999999776622110        0011111111   1245  467889999999999999999943

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=87.07  E-value=1.2  Score=44.27  Aligned_cols=76  Identities=29%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             ceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccC-C--cchhhhhcc----ccC--CccccccHHHHHHHH
Q psy3862         161 HVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKT-S--DFFLIQFYS----CIP--QAGNVVTGEMVEELI  231 (671)
Q Consensus       161 ~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~-~--~~~~i~~i~----~~p--~aGnV~t~~~a~~li  231 (671)
                      ..++...+.+.+.+..+.+.|+|++.++-    .-.+..++.. +  .+..+..+.    .+|  +.||| +.+.+..++
T Consensus        96 ~~~ig~s~h~~~e~~~a~~~g~dyi~~~~----v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~  170 (196)
T TIGR00693        96 DKIIGVSTHNLEELAEAEAEGADYIGFGP----IFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL  170 (196)
T ss_pred             CCEEEEeCCCHHHHHHHhHcCCCEEEECC----ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH
Confidence            34666677888888888999999998742    1001111110 1  111111111    245  68999 789999999


Q ss_pred             HcCCCEEEEc
Q psy3862         232 LSGADVIKVG  241 (671)
Q Consensus       232 ~aGAdgvkVG  241 (671)
                      ++|+|||=+|
T Consensus       171 ~~G~~gva~~  180 (196)
T TIGR00693       171 AAGADGVAVV  180 (196)
T ss_pred             HcCCCEEEEh
Confidence            9999999777

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=86.88  E-value=20  Score=37.55  Aligned_cols=165  Identities=21%  Similarity=0.253  Sum_probs=99.8

Q ss_pred             HHHHHHHHHCCCcEE---EECcCC-CceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVI---KVGIGP-GSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~I---vVdga~-G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+...+.||..+   .+|+|. |..         .+...+.-+ .  ..|  ++|||=|.+.+.+|+++|++-|-+|
T Consensus        34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~---------~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiG  104 (241)
T COG0106          34 LEVAKKWSDQGAEWLHLVDLDGAKAGGP---------RNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIG  104 (241)
T ss_pred             HHHHHHHHHcCCcEEEEeeccccccCCc---------ccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEe
Confidence            478888888888754   556655 211         122222222 1  234  7999999999999999999999999


Q ss_pred             ccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeee
Q psy3862         242 IGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTF  321 (671)
Q Consensus       242 ~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l  321 (671)
                                 -.++-.|.+     +.++++.+|.+|+.                                   +|..+-
T Consensus       105 -----------t~av~~p~~-----v~~~~~~~g~rivv-----------------------------------~lD~r~  133 (241)
T COG0106         105 -----------TAAVKNPDL-----VKELCEEYGDRIVV-----------------------------------ALDARD  133 (241)
T ss_pred             -----------cceecCHHH-----HHHHHHHcCCcEEE-----------------------------------EEEccC
Confidence                       344666654     45666677655554                                   111111


Q ss_pred             eeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC------------HHHHHHHHhcCcccccceeeecc
Q psy3862         322 TFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT------------LEEWKAFAVQNPDVIKHVADGGC  389 (671)
Q Consensus       322 ~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~------------~e~~~~~v~~~~~~~~~v~~~~~  389 (671)
                      .+. .-+-|.       .+-.++-.++++.+...|.-++|+-.-+            ..+..+.+ .    ++ +.+|||
T Consensus       134 g~v-av~GW~-------e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~----ip-viaSGG  199 (241)
T COG0106         134 GKV-AVSGWQ-------EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV-D----IP-VIASGG  199 (241)
T ss_pred             Ccc-cccccc-------ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh-C----cC-EEEecC
Confidence            100 000111       1122345689999999999999984332            22233322 1    22 455666


Q ss_pred             c-ChhhHHHHHHc-CCcEEEEc
Q psy3862         390 T-SPGDVAKAMGA-GADFVMLG  409 (671)
Q Consensus       390 ~-~~~~~~~l~~a-G~d~i~id  409 (671)
                      + +-+|+..|.+. |+.=+++.
T Consensus       200 v~s~~Di~~l~~~~G~~GvIvG  221 (241)
T COG0106         200 VSSLDDIKALKELSGVEGVIVG  221 (241)
T ss_pred             cCCHHHHHHHHhcCCCcEEEEe
Confidence            6 56999999777 87777765

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=86.88  E-value=3.9  Score=42.51  Aligned_cols=114  Identities=16%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE-CcCCCceEEEEe
Q psy3862         121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV-GIGPGSVCTTRL  199 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV-dga~G~~~~t~v  199 (671)
                      .++++.++  +++.+++...+  .+...+.++.+++.......++.-..+.++.+.+.+...|.|-+ ...+++...+..
T Consensus        96 fi~~~~~a--G~~giiipDl~--~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~  171 (242)
T cd04724          96 FLRDAKEA--GVDGLIIPDLP--PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTEL  171 (242)
T ss_pred             HHHHHHHC--CCcEEEECCCC--HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence            35556666  77877664332  34444555555554332233333334578899888855665543 333333211100


Q ss_pred             cccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         200 KNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       200 ~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..  .....+..++   ..|  ++|||-+.+.++.+.++ |||+-||
T Consensus       172 ~~--~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG  215 (242)
T cd04724         172 PD--DLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVG  215 (242)
T ss_pred             Ch--hHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence            00  0011122221   345  79999999999999999 9999888

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=86.87  E-value=2  Score=39.77  Aligned_cols=91  Identities=22%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCCeEEEc--cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccc
Q psy3862         347 EMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTN  424 (671)
Q Consensus       347 ~mA~~la~~Gglgvih--r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~  424 (671)
                      .|+..|-+.+|+-+++  .+.++|+..+.+.+                        .++|+++|=.+...|....-+++.
T Consensus        17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~------------------------~~~d~V~iS~~~~~~~~~~~~~~~   72 (122)
T cd02071          17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ------------------------EDVDVIGLSSLSGGHMTLFPEVIE   72 (122)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH------------------------cCCCEEEEcccchhhHHHHHHHHH
Confidence            4677788889999888  56777777776643                        355666664222233333333333


Q ss_pred             ccccccc-cccccccccCceeeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862         425 IEYMFFP-LVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAG  473 (671)
Q Consensus       425 ~~~~~~~-~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G  473 (671)
                      .++...| .+        .++.||+..+.+..++.++|.|.+    +++|
T Consensus        73 ~L~~~~~~~i--------~i~~GG~~~~~~~~~~~~~G~d~~----~~~~  110 (122)
T cd02071          73 LLRELGAGDI--------LVVGGGIIPPEDYELLKEMGVAEI----FGPG  110 (122)
T ss_pred             HHHhcCCCCC--------EEEEECCCCHHHHHHHHHCCCCEE----ECCC
Confidence            3333211 11        156888877777777889999988    4666

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=86.82  E-value=10  Score=40.08  Aligned_cols=127  Identities=19%  Similarity=0.214  Sum_probs=76.3

Q ss_pred             ccCceEEecCCCcc------ccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceE-EecCCChhhHHHHHHH
Q psy3862          54 YQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVA-VSSGISAKDLAGLKEI  125 (671)
Q Consensus        54 ~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~-v~~G~~~~d~~rl~~l  125 (671)
                      ..++|++  -|++.      +..++...+++.|--|+|=..+++||..++..+.. .-+.++. +++..+   .+|++.+
T Consensus        87 ~~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~---~eri~~i  161 (258)
T PRK13111         87 DPTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTT---DERLKKI  161 (258)
T ss_pred             CCCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHH
Confidence            3567987  57763      33567777778877798666788887666653221 1122333 222222   3566666


Q ss_pred             HHhCCCceEEEeeccCC-------CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         126 LAALPEIEYICLDVANG-------YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       126 ~~a~~~~d~Ivld~a~G-------~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .+..++  +|.+-...|       .+....+.++++|+.. ...+++| .+.+++.++.+.+. ||.+++.+
T Consensus       162 ~~~s~g--fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS  229 (258)
T PRK13111        162 ASHASG--FVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGS  229 (258)
T ss_pred             HHhCCC--cEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence            665443  332211112       2355667888887744 3444445 67799999999986 99998843

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=86.74  E-value=4.3  Score=42.69  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=35.9

Q ss_pred             hhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC
Q psy3862         262 SAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD  341 (671)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD  341 (671)
                      .-+++.|+.++++|++++-             +=.||      .|++..|-....++ -|..-..-+..+|+|+++..||
T Consensus        29 e~~~~~a~~~~~~g~~~~r-------------~g~~k------pRts~~sf~G~G~~-gl~~L~~~~~~~Gl~~~Tev~d   88 (250)
T PRK13397         29 DHIRLAASSAKKLGYNYFR-------------GGAYK------PRTSAASFQGLGLQ-GIRYLHEVCQEFGLLSVSEIMS   88 (250)
T ss_pred             HHHHHHHHHHHHcCCCEEE-------------ecccC------CCCCCcccCCCCHH-HHHHHHHHHHHcCCCEEEeeCC
Confidence            3477888888888887664             44555      45555553333332 2211111134679999998888


Q ss_pred             C
Q psy3862         342 T  342 (671)
Q Consensus       342 t  342 (671)
                      .
T Consensus        89 ~   89 (250)
T PRK13397         89 E   89 (250)
T ss_pred             H
Confidence            4

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=86.71  E-value=9.7  Score=44.37  Aligned_cols=67  Identities=18%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             HHHHHHHHHcCCeEEEccCC---------CHHHHHHHHhcCcccccceeeecccChhhHHHHHH-cCCcEEEEcccccc
Q psy3862         346 FEMAKHLAKHGLFTTIHKYY---------TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG-AGADFVMLGGMFAG  414 (671)
Q Consensus       346 ~~mA~~la~~Gglgvihr~~---------~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~-aG~d~i~id~~a~g  414 (671)
                      .+.|.++.++|.=.+|.-..         ++| +.+.+++..+ ++.++.+|..+.+|+.++++ .|+|....-+..|-
T Consensus       441 ~~~~~~~~~~Gageil~t~id~DGt~~G~d~~-l~~~v~~~~~-ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~  517 (538)
T PLN02617        441 YELAKAVEELGAGEILLNCIDCDGQGKGFDIE-LVKLVSDAVT-IPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR  517 (538)
T ss_pred             HHHHHHHHhcCCCEEEEeeccccccccCcCHH-HHHHHHhhCC-CCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence            68899999998777777444         333 3333333211 34455455557899998865 67888776544443

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=86.60  E-value=6.6  Score=39.62  Aligned_cols=111  Identities=24%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             HHHHHHHhCCCceEE--Eeecc---CCCChHHHHHHHHHHHhCCCce-E-EEEEe-cc----HHHHHHHHHCCCcEEEEC
Q psy3862         121 GLKEILAALPEIEYI--CLDVA---NGYTQTFVDFVRRIREMYPKHV-I-IAGNV-VT----GEMVEELILSGADVIKVG  188 (671)
Q Consensus       121 rl~~l~~a~~~~d~I--vld~a---~G~~~~~~~~ik~lr~~~P~~~-l-i~g~v-~t----~e~a~~Li~AGaD~IvVd  188 (671)
                      .+++.+..  +++.+  +++..   .++.+...+.++++++...... + +.... .+    ...++.+.++|+|+|+..
T Consensus        74 eve~A~~~--GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs  151 (203)
T cd00959          74 EAREAIAD--GADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS  151 (203)
T ss_pred             HHHHHHHc--CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence            35555555  55554  44432   2233445555666655432222 1 11111 12    244778889999999997


Q ss_pred             cCCCceEEEEecccCCcchhh-hhcc-ccC--CccccccHHHHHHHHHcCCCEE
Q psy3862         189 IGPGSVCTTRLKNKTSDFFLI-QFYS-CIP--QAGNVVTGEMVEELILSGADVI  238 (671)
Q Consensus       189 ga~G~~~~t~v~~~~~~~~~i-~~i~-~~p--~aGnV~t~~~a~~li~aGAdgv  238 (671)
                      ++-+....+     .+++.++ +.+. .+|  ++||+-|.++++.++++||+-+
T Consensus       152 TG~~~~~at-----~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri  200 (203)
T cd00959         152 TGFGPGGAT-----VEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI  200 (203)
T ss_pred             CCCCCCCCC-----HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence            543211000     0011111 1111 234  7999999999999999999843

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=86.54  E-value=3  Score=42.96  Aligned_cols=167  Identities=26%  Similarity=0.300  Sum_probs=88.0

Q ss_pred             HHHHHHHHHCCCcEE---EECcC-CCceEEEEecccCCcchhhhhcc-c--cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVI---KVGIG-PGSVCTTRLKNKTSDFFLIQFYS-C--IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~I---vVdga-~G~~~~t~v~~~~~~~~~i~~i~-~--~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+.+.+.|+|-+   .+|++ .|..         +++.++.-+. .  +|  +.|||-+.+.++.++++||+-|-+|
T Consensus        32 ~~~a~~~~~~g~~~l~ivDLdaa~~g~~---------~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvig  102 (229)
T PF00977_consen   32 VEVAKAFNEQGADELHIVDLDAAKEGRG---------SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIG  102 (229)
T ss_dssp             HHHHHHHHHTT-SEEEEEEHHHHCCTHH---------HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEES
T ss_pred             HHHHHHHHHcCCCEEEEEEccCcccCch---------hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeC
Confidence            377888888999955   33333 2321         1333333332 2  45  7999999999999999999988777


Q ss_pred             ccCCCccccceecccCcchhhhHHHHHHHhhhcCC-cchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862         242 IGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG-HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       242 ~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~  320 (671)
                              |.   .+=.|.+  +   .+.++.+|- +|+.             ++|+                    ...
T Consensus       103 --------t~---~~~~~~~--l---~~~~~~~g~~~ivv-------------slD~--------------------~~g  133 (229)
T PF00977_consen  103 --------TE---ALEDPEL--L---EELAERYGSQRIVV-------------SLDA--------------------RDG  133 (229)
T ss_dssp             --------HH---HHHCCHH--H---HHHHHHHGGGGEEE-------------EEEE--------------------EET
T ss_pred             --------hH---HhhchhH--H---HHHHHHcCcccEEE-------------EEEe--------------------eec
Confidence                    22   2333433  2   333444443 3333             1111                    111


Q ss_pred             eeeccCCceeeCcceEecCCC--CCCCHHHHHHHHHcCCeEEEc---------cCCCHHHHHHHHhcCcccccceeeecc
Q psy3862         321 FTFRNSGKTYQGVPIIAANMD--TVGTFEMAKHLAKHGLFTTIH---------KYYTLEEWKAFAVQNPDVIKHVADGGC  389 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MD--tV~~~~mA~~la~~Gglgvih---------r~~~~e~~~~~v~~~~~~~~~v~~~~~  389 (671)
                      .           -..+..--+  .+.-.+++..|.++|.=.+|.         .-.+.|- .+.+++.-+ + .+.++||
T Consensus       134 ~-----------~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~-~~~l~~~~~-~-~viasGG  199 (229)
T PF00977_consen  134 Y-----------KVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLEL-LKQLAEAVN-I-PVIASGG  199 (229)
T ss_dssp             E-----------EEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHH-HHHHHHHHS-S-EEEEESS
T ss_pred             e-----------EEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHH-HHHHHHHcC-C-CEEEecC
Confidence            0           111111111  133467888888888776766         2233332 333322111 2 3455666


Q ss_pred             c-ChhhHHHHHHcCCcEEEEc
Q psy3862         390 T-SPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       390 ~-~~~~~~~l~~aG~d~i~id  409 (671)
                      + +.+|+.++.+.|+|-..+.
T Consensus       200 v~~~~Dl~~l~~~G~~gvivg  220 (229)
T PF00977_consen  200 VRSLEDLRELKKAGIDGVIVG  220 (229)
T ss_dssp             --SHHHHHHHHHTTECEEEES
T ss_pred             CCCHHHHHHHHHCCCcEEEEe
Confidence            6 6799999999999888876

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=86.46  E-value=15  Score=36.74  Aligned_cols=121  Identities=17%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC-HHHHHHHHhcCcccccceeeecccChhhHHH--HHHcCCcEEEE
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT-LEEWKAFAVQNPDVIKHVADGGCTSPGDVAK--AMGAGADFVML  408 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~-~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~--l~~aG~d~i~i  408 (671)
                      .++++.-.     +.+....+++.-++-.+|-|-+ ..+....+++.-. .+.+.+.+.....+.+.  ....++|++.+
T Consensus        53 ~V~v~vn~-----~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~aD~il~  126 (203)
T cd00405          53 RVGVFVNE-----DLEEILEIAEELGLDVVQLHGDESPEYCAQLRARLG-LPVIKAIRVKDEEDLEKAAAYAGEVDAILL  126 (203)
T ss_pred             EEEEEeCC-----CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcC-CcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence            36666422     2566667777777777775533 2234444443100 12333344444444433  34569999999


Q ss_pred             cccccc----cc-ccccccccccccccccccccccccCceeeccccCchhHHHHHHcC-CcEEEECc
Q psy3862         409 GGMFAG----HD-QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAG-ADFVMLGG  469 (671)
Q Consensus       409 d~~a~g----h~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aG-Ad~V~vG~  469 (671)
                      |....+    +. ....++++.+....|+          ++.|| +...++.++++.| +++|=|+.
T Consensus       127 dt~~~~~~Gg~g~~~~~~~l~~~~~~~Pv----------ilaGG-I~~~Nv~~~i~~~~~~gvdv~S  182 (203)
T cd00405         127 DSKSGGGGGGTGKTFDWSLLRGLASRKPV----------ILAGG-LTPDNVAEAIRLVRPYGVDVSS  182 (203)
T ss_pred             cCCCCCCCCCCcceEChHHhhccccCCCE----------EEECC-CChHHHHHHHHhcCCCEEEcCC
Confidence            932211    11 1111222211112232          35677 5888899999988 99998874

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.22  E-value=2.4  Score=45.50  Aligned_cols=71  Identities=24%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             ChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         115 SAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       115 ~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ..+..+.+.+.+++  ++|+|-+|..  .++.+.+.++.+++.+|...+.+....+.+.+..+.++|||+|++..
T Consensus       202 Ev~tleea~eA~~~--GaD~I~LDn~--~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgs  272 (288)
T PRK07428        202 ETETLEQVQEALEY--GADIIMLDNM--PVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSA  272 (288)
T ss_pred             ECCCHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEch
Confidence            33456667677776  7899998833  35666666666655567766666555689999999999999997743

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=86.15  E-value=3.3  Score=44.35  Aligned_cols=87  Identities=10%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCccccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVV  222 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~  222 (671)
                      .+.+.++.+|+..|... +.--+.+.++++.++++|||+|-.|--.-..   +...+++..+..       .+-++||| 
T Consensus       175 ~i~~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~-------~leaSGGI-  245 (284)
T PRK06096        175 DWSGAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHC-------TLSLAGGI-  245 (284)
T ss_pred             cHHHHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCe-------EEEEECCC-
Confidence            45567777777666533 5556689999999999999999887422100   000010000110       01178998 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+++...+|+|.+-+|
T Consensus       246 ~~~ni~~yA~tGvD~Is~g  264 (284)
T PRK06096        246 NLNTLKNYADCGIRLFITS  264 (284)
T ss_pred             CHHHHHHHHhcCCCEEEEC
Confidence            8999999999999999665

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=85.82  E-value=4  Score=40.84  Aligned_cols=110  Identities=21%  Similarity=0.219  Sum_probs=60.2

Q ss_pred             HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE--Eecc-HHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862         121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG--NVVT-GEMVEELILSGADVIKVGIGPGSVCTT  197 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g--~v~t-~e~a~~Li~AGaD~IvVdga~G~~~~t  197 (671)
                      .++++.++  +++++++..... .....+.++..++.  ....+.+  +..| .+.++.+.+.|+|++.+..  |...-+
T Consensus        68 ~~~~~~~~--Gad~i~vh~~~~-~~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p--g~~~~~  140 (206)
T TIGR03128        68 EAEQAFAA--GADIVTVLGVAD-DATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHT--GLDEQA  140 (206)
T ss_pred             HHHHHHHc--CCCEEEEeccCC-HHHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC--CcCccc
Confidence            45566666  778887654321 12233444444432  1222222  2223 4788888899999998752  221000


Q ss_pred             EecccCCcchhhh----hccccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKTSDFFLIQ----FYSCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~~~~~~i~----~i~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .. .  ..+..+.    .+...+  +.||| +.+.+..++++|||++-+|
T Consensus       141 ~~-~--~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vG  186 (206)
T TIGR03128       141 KG-Q--NPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVG  186 (206)
T ss_pred             CC-C--CCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence            00 0  0111111    111122  47999 8899999999999999887

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=85.75  E-value=2.1  Score=44.90  Aligned_cols=110  Identities=12%  Similarity=0.032  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--Cc
Q psy3862         145 QTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QA  218 (671)
Q Consensus       145 ~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~a  218 (671)
                      ...++..+.|.+.   +..+-. --.+.-.+++|.++|+.+|---+++=.+  .   .-..+-+.++.+.   .+|  +.
T Consensus       124 ~etl~Aae~Lv~e---GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g---~Gl~n~~~l~~i~e~~~vpVivd  195 (267)
T CHL00162        124 IGTLKAAEFLVKK---GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--G---QGLQNLLNLQIIIENAKIPVIID  195 (267)
T ss_pred             HHHHHHHHHHHHC---CCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--C---CCCCCHHHHHHHHHcCCCcEEEe
Confidence            4455555555332   233332 2257889999999999999766533110  0   0011222223331   244  79


Q ss_pred             cccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHHHHh
Q psy3862         219 GNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECADAA  271 (671)
Q Consensus       219 GnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~  271 (671)
                      +||.|++.+..++++|||||-+.        |-++ -...|  +..|+..+.++-
T Consensus       196 AGIgt~sDa~~AmElGaDgVL~n--------SaIa-kA~dP~~mA~a~~~AV~AG  241 (267)
T CHL00162        196 AGIGTPSEASQAMELGASGVLLN--------TAVA-QAKNPEQMAKAMKLAVQAG  241 (267)
T ss_pred             CCcCCHHHHHHHHHcCCCEEeec--------ceee-cCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999776        4444 45566  445555444443

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=85.67  E-value=8  Score=40.40  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .+.++++.+..+.-.=++|.+.+.+.+++|+++|++.+++.+
T Consensus        64 ~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt  105 (241)
T COG0106          64 LEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGT  105 (241)
T ss_pred             HHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEec
Confidence            455666655555445577788888888888888888888876

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=85.67  E-value=4  Score=43.52  Aligned_cols=82  Identities=13%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-cccC--CccccccH
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-SCIP--QAGNVVTG  224 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~~~p--~aGnV~t~  224 (671)
                      ...++..|+..|. .++.-.+.+.++++.++++|+|+|-.|--. -   ..+++      .++.+ ..+|  +.||| |.
T Consensus       177 ~~av~~~r~~~~~-~~I~VEv~tleea~eA~~~gaD~I~LD~~~-~---e~l~~------~v~~~~~~i~leAsGGI-t~  244 (277)
T PRK05742        177 AQAVAAAHRIAPG-KPVEVEVESLDELRQALAAGADIVMLDELS-L---DDMRE------AVRLTAGRAKLEASGGI-NE  244 (277)
T ss_pred             HHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHcCCCEEEECCCC-H---HHHHH------HHHHhCCCCcEEEECCC-CH
Confidence            3445555655554 456556788999999999999999876211 0   00110      01111 1234  79999 89


Q ss_pred             HHHHHHHHcCCCEEEEc
Q psy3862         225 EMVEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG  241 (671)
                      +.+.++.++|+|++=+|
T Consensus       245 ~ni~~~a~tGvD~Isvg  261 (277)
T PRK05742        245 STLRVIAETGVDYISIG  261 (277)
T ss_pred             HHHHHHHHcCCCEEEEC
Confidence            99999999999999777

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=85.13  E-value=4  Score=43.38  Aligned_cols=85  Identities=31%  Similarity=0.399  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----cc-CCccc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----CI-PQAGN  220 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~~-p~aGn  220 (671)
                      .+.+.+++.|+..|...++---+.+.++++.+++||+|+|-.|--.-.    ++++      .++.+.    .+ -+.||
T Consensus       173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~~e----~~~~------av~~l~~~~~~~lEaSGg  242 (280)
T COG0157         173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMSPE----ELKE------AVKLLGLAGRALLEASGG  242 (280)
T ss_pred             cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCCHH----HHHH------HHHHhccCCceEEEEeCC
Confidence            477788888877777676666778999999999999999977642210    0100      011100    01 16788


Q ss_pred             cccHHHHHHHHHcCCCEEEEc
Q psy3862         221 VVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG  241 (671)
                      | |.+.+.+....|+|-+-+|
T Consensus       243 I-t~~ni~~yA~tGVD~IS~g  262 (280)
T COG0157         243 I-TLENIREYAETGVDVISVG  262 (280)
T ss_pred             C-CHHHHHHHhhcCCCEEEeC
Confidence            7 8889999999999999877

>PRK08508 biotin synthase; Provisional

Probab=85.08  E-value=6.3  Score=41.80  Aligned_cols=57  Identities=11%  Similarity=0.031  Sum_probs=38.5

Q ss_pred             ccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862         218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH  277 (671)
Q Consensus       218 aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~  277 (671)
                      .-|..+.+.++.|.++|+|.+-+++..+.- ..+.++.  .-.+.-++++.+.||++|.+
T Consensus        96 s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~-~~~~i~~--~~~~~~~l~~i~~a~~~Gi~  152 (279)
T PRK08508         96 CNGTASVEQLKELKKAGIFSYNHNLETSKE-FFPKICT--THTWEERFQTCENAKEAGLG  152 (279)
T ss_pred             cCCCCCHHHHHHHHHcCCCEEcccccchHH-HhcCCCC--CCCHHHHHHHHHHHHHcCCe
Confidence            557779999999999999999998766431 1111211  12455678888888876644

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=85.03  E-value=7.6  Score=41.03  Aligned_cols=126  Identities=21%  Similarity=0.272  Sum_probs=76.6

Q ss_pred             cCceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcC-cccccceE-EecCCChhhHHHHHHHH
Q psy3862          55 QGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQN-PDVIKHVA-VSSGISAKDLAGLKEIL  126 (671)
Q Consensus        55 l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~-p~~~~~~~-v~~G~~~~d~~rl~~l~  126 (671)
                      .++|++.  |++-.      ..++...++++|--|+|=..+++||...+.... ..-+.++. +++..+   .+|++.+.
T Consensus        86 ~~~pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~---~~Ri~~i~  160 (259)
T PF00290_consen   86 PDIPIVL--MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP---EERIKKIA  160 (259)
T ss_dssp             TSSEEEE--EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS----HHHHHHHH
T ss_pred             CCCCEEE--EeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC---HHHHHHHH
Confidence            6789877  77632      245777677777669887788888765544211 11122333 233333   46777777


Q ss_pred             HhCCCceEEEeeccCCC-------ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         127 AALPEIEYICLDVANGY-------TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       127 ~a~~~~d~Ivld~a~G~-------~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +...  .++.+-...|.       +..+.+.++++|+.. +..+++| .+.++++++.+. .|+|.++|++
T Consensus       161 ~~a~--gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS  227 (259)
T PF00290_consen  161 KQAS--GFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGS  227 (259)
T ss_dssp             HH-S--SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred             HhCC--cEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence            6633  34443333332       355677788877654 5567777 578999999988 9999999954

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=84.96  E-value=4.7  Score=42.24  Aligned_cols=42  Identities=21%  Similarity=0.139  Sum_probs=28.6

Q ss_pred             cccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862         221 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG  276 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~  276 (671)
                      ....+.+..++++|+|.+++.....              ....+.++.+.++++|.
T Consensus        85 ~~~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~  126 (263)
T cd07943          85 IGTVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGM  126 (263)
T ss_pred             ccCHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCC
Confidence            3446888889999999998864222              12356777788877654

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=84.27  E-value=7.4  Score=39.87  Aligned_cols=111  Identities=24%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             HHHHHHHHhCCCceE--EEeecc---CCCChHHHHHHHHHHHhCCCc-eEE---EEEecc---HHHHHHHHHCCCcEEEE
Q psy3862         120 AGLKEILAALPEIEY--ICLDVA---NGYTQTFVDFVRRIREMYPKH-VII---AGNVVT---GEMVEELILSGADVIKV  187 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~--Ivld~a---~G~~~~~~~~ik~lr~~~P~~-~li---~g~v~t---~e~a~~Li~AGaD~IvV  187 (671)
                      ..+++.+..  +++-  ++++..   .|+.....+.++.+++..... .++   .+....   ....+.+.++|||+|+.
T Consensus        74 ~E~~~Av~~--GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT  151 (211)
T TIGR00126        74 YETKEAIKY--GADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT  151 (211)
T ss_pred             HHHHHHHHc--CCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence            345555665  4444  444543   234455555566665543221 121   122111   24566788999999998


Q ss_pred             CcCCCc-eEEEEecccCCcchh-hhhcc-ccC--CccccccHHHHHHHHHcCCCEE
Q psy3862         188 GIGPGS-VCTTRLKNKTSDFFL-IQFYS-CIP--QAGNVVTGEMVEELILSGADVI  238 (671)
Q Consensus       188 dga~G~-~~~t~v~~~~~~~~~-i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgv  238 (671)
                      .++-+. ..+      ..++.+ .+.+. .+|  ++|||-|.+++++++++||+-+
T Consensus       152 sTGf~~~gat------~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ri  201 (211)
T TIGR00126       152 STGFGAGGAT------VEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI  201 (211)
T ss_pred             CCCCCCCCCC------HHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence            764321 100      001111 11111 133  7999999999999999999943

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=84.23  E-value=3.8  Score=43.99  Aligned_cols=67  Identities=24%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .++.+.+.+++  ++|.|-+|-.  .++.+.+.++.+++.+|+..+.+....+.+.++...+.|||+|.+.
T Consensus       208 tl~ea~eal~~--gaDiI~LDnm--~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~g  274 (289)
T PRK07896        208 SLEQLDEVLAE--GAELVLLDNF--PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVG  274 (289)
T ss_pred             CHHHHHHHHHc--CCCEEEeCCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence            34556666666  7888998833  4677777777666667877766665678999999999999999763

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=83.99  E-value=15  Score=38.18  Aligned_cols=120  Identities=21%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCceEEE-------EEe----------
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKHVIIA-------GNV----------  168 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~li~-------g~v----------  168 (671)
                      |+.++-|+.  ..+.++.++..  +++-+++.+..-   .-.++++++.+.| |.. +++       +.+          
T Consensus        75 ~v~vGGGIr--s~e~~~~~l~~--Ga~kvvigt~a~---~~p~~~~~~~~~~g~~~-ivvslD~~~~~~v~~~gw~~~~~  146 (232)
T PRK13586         75 WIQVGGGIR--DIEKAKRLLSL--DVNALVFSTIVF---TNFNLFHDIVREIGSNR-VLVSIDYDNTKRVLIRGWKEKSM  146 (232)
T ss_pred             CEEEeCCcC--CHHHHHHHHHC--CCCEEEECchhh---CCHHHHHHHHHHhCCCC-EEEEEEcCCCCEEEccCCeeCCC
Confidence            666655553  45666667776  777777764421   1124455544445 221 111       111          


Q ss_pred             ccHHHHHHHHHCCCcEE-EECc-CCCceEEEEecccCCcchhhhhcccc--C--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         169 VTGEMVEELILSGADVI-KVGI-GPGSVCTTRLKNKTSDFFLIQFYSCI--P--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       169 ~t~e~a~~Li~AGaD~I-vVdg-a~G~~~~t~v~~~~~~~~~i~~i~~~--p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+-+++|.+.|+.-| ..|. ..|+       ..-+++.+++.+...  |  ++|||.+.+-.+.+..+|++|+-||
T Consensus       147 ~~~e~~~~l~~~g~~~ii~tdI~~dGt-------~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~~G~~gvivg  218 (232)
T PRK13586        147 EVIDGIKKVNELELLGIIFTYISNEGT-------TKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKNVGFDYIIVG  218 (232)
T ss_pred             CHHHHHHHHHhcCCCEEEEeccccccc-------CcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence            11377888888998554 4333 2221       112454444444221  2  7999999999999999999999999

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=83.99  E-value=18  Score=37.34  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcC-CeEEeecC--CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCC---
Q psy3862          70 FEMAKHLAKHG-LFTTIHKY--YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGY---  143 (671)
Q Consensus        70 ~~lA~Ala~~g-glgvIh~n--~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~---  143 (671)
                      .+....++++| -+=++|.=  .-+.+..+++++.. ...-+.++++++.+   .+..++....-+...+++..+|-   
T Consensus        74 ~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G-~kaGv~lnP~Tp~~---~i~~~l~~vD~VllMsVnPGfgGQ~F  149 (220)
T COG0036          74 DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELG-VKAGLVLNPATPLE---ALEPVLDDVDLVLLMSVNPGFGGQKF  149 (220)
T ss_pred             HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcC-CeEEEEECCCCCHH---HHHHHHhhCCEEEEEeECCCCccccc
Confidence            56677788887 34457842  22333344444321 11113345556544   34444443112233455544432   


Q ss_pred             ChHHHHHHHHHHHhCCC---ceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         144 TQTFVDFVRRIREMYPK---HVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       144 ~~~~~~~ik~lr~~~P~---~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .....++++++|+..+.   ..+.+=...+.+.++.+.+||||++|+++
T Consensus       150 i~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS  198 (220)
T COG0036         150 IPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGS  198 (220)
T ss_pred             CHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence            35677788887765442   22323233578999999999999999854

>PRK06852 aldolase; Validated

Probab=83.95  E-value=2.8  Score=45.28  Aligned_cols=46  Identities=20%  Similarity=0.009  Sum_probs=35.6

Q ss_pred             HHHHHHcC------CCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862         227 VEELILSG------ADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS  280 (671)
Q Consensus       227 a~~li~aG------AdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~  280 (671)
                      +++++++|      ||+|-+-+-+||-   .+     .-|+.-+.++++.|+++|.++++
T Consensus       121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~---~E-----~~ml~~l~~v~~ea~~~GlPll~  172 (304)
T PRK06852        121 VEQVVEFKENSGLNILGVGYTIYLGSE---YE-----SEMLSEAAQIIYEAHKHGLIAVL  172 (304)
T ss_pred             HHHHHhcCCccCCCceEEEEEEecCCH---HH-----HHHHHHHHHHHHHHHHhCCcEEE
Confidence            66788888      8899999988852   11     45888889999999988776655

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=83.90  E-value=5.1  Score=43.10  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c--cCCcccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C--IPQAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~--~p~aGnV~t  223 (671)
                      +.+.+++.|+..|... +.--+.+.++++.++++|+|+|-+|--.-.    .+++      .++++. .  +-++||| |
T Consensus       195 i~~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~s~e----~~~~------av~~~~~~~~ieaSGGI-~  262 (296)
T PRK09016        195 IRQAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNFTTE----QMRE------AVKRTNGRALLEVSGNV-T  262 (296)
T ss_pred             HHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCCChH----HHHH------HHHhhcCCeEEEEECCC-C
Confidence            4566777666666533 555667899999999999999988752211    0110      001111 1  1278888 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.+...+|+|.+-+|
T Consensus       263 ~~ni~~yA~tGVD~Is~g  280 (296)
T PRK09016        263 LETLREFAETGVDFISVG  280 (296)
T ss_pred             HHHHHHHHhcCCCEEEeC
Confidence            899999999999999877

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=83.86  E-value=4.4  Score=41.52  Aligned_cols=98  Identities=23%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCc--chh
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSD--FFL  208 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~--~~~  208 (671)
                      +.|.+++-..  . .    .+...++.++...+++..+.+.+.++.+.+.|+|+|.+    |++--|..|+..+.  +..
T Consensus        81 ~AdGVHlGq~--D-~----~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~----GpifpT~tK~~~~~~G~~~  149 (211)
T COG0352          81 GADGVHLGQD--D-M----PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGL----GPIFPTSTKPDAPPLGLEG  149 (211)
T ss_pred             CCCEEEcCCc--c-c----chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEE----CCcCCCCCCCCCCccCHHH
Confidence            6677776422  1 1    12223344555567777888999999999999999976    33311112211111  111


Q ss_pred             hhhc---cccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862         209 IQFY---SCIP--QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       209 i~~i---~~~p--~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +..+   ..+|  +-||+ +.+.+..++++|||||=|
T Consensus       150 l~~~~~~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAv  185 (211)
T COG0352         150 LREIRELVNIPVVAIGGI-NLENVPEVLEAGADGVAV  185 (211)
T ss_pred             HHHHHHhCCCCEEEEcCC-CHHHHHHHHHhCCCeEEe
Confidence            1111   2367  57787 788999999999998833

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=83.77  E-value=9  Score=41.80  Aligned_cols=138  Identities=20%  Similarity=0.260  Sum_probs=91.2

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      +.+.+|-++  +.+.+=+...   ...-.+.++.+++..| .++++--..+...|...+++|+|.|.+            
T Consensus        38 ~QI~~L~~a--GceiVRvavp---~~~~A~al~~I~~~~~-iPlVADIHFd~~lAl~a~~~g~dkiRI------------   99 (346)
T TIGR00612        38 AQIRALEEA--GCDIVRVTVP---DRESAAAFEAIKEGTN-VPLVADIHFDYRLAALAMAKGVAKVRI------------   99 (346)
T ss_pred             HHHHHHHHc--CCCEEEEcCC---CHHHHHhHHHHHhCCC-CCEEEeeCCCcHHHHHHHHhccCeEEE------------
Confidence            455666666  6666544321   2455667777777665 455654446677888889999999966            


Q ss_pred             cccCCcchhhhhccccCCccccccHHHHHHHHHcCCC---EEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862         200 KNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGAD---VIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG  276 (671)
Q Consensus       200 ~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAd---gvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~  276 (671)
                                       -=||+++.+..+.++++--+   .+|+|+..||.- -+..-=-|.|...|..|.|-.-     
T Consensus       100 -----------------NPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~-~~~~~kyg~~t~eamveSAl~~-----  156 (346)
T TIGR00612       100 -----------------NPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLE-RRLLEKYGDATAEAMVQSALEE-----  156 (346)
T ss_pred             -----------------CCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-HHHHHHcCCCCHHHHHHHHHHH-----
Confidence                             24888888887777764322   689999999985 3555555677777777766321     


Q ss_pred             cchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862         277 HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK  310 (671)
Q Consensus       277 ~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~  310 (671)
                                  +..-..++|+|+-|-=|-|++.
T Consensus       157 ------------v~~le~~~F~diviS~KsSdv~  178 (346)
T TIGR00612       157 ------------AAILEKLGFRNVVLSMKASDVA  178 (346)
T ss_pred             ------------HHHHHHCCCCcEEEEEEcCCHH
Confidence                        1223468899998866665554

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=83.69  E-value=15  Score=36.37  Aligned_cols=126  Identities=17%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             CceEEecCCCccccHHHHHHHHHcCCeEE-eecCCCHH---HHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCC
Q psy3862          56 GVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKYYTLE---EWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE  131 (671)
Q Consensus        56 ~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~E---eq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~  131 (671)
                      ++|++..-|..-.....+..+.++|.=.+ +|.-.+.+   +..+..++.   ..++.+.. .++.+.+.+.+....  +
T Consensus        53 ~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~---g~~~~v~~-~~~~t~~e~~~~~~~--~  126 (202)
T cd04726          53 DKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY---GKEVQVDL-IGVEDPEKRAKLLKL--G  126 (202)
T ss_pred             CCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc---CCeEEEEE-eCCCCHHHHHHHHHC--C
Confidence            56776665533333345666777776665 67543332   233333322   11222210 122223333334454  5


Q ss_pred             ceEEEeeccC--CC--ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         132 IEYICLDVAN--GY--TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       132 ~d~Ivld~a~--G~--~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .+.+.+..+.  +.  .....+.++++++. ++..+++....+.+.+..+.++|||.+++.
T Consensus       127 ~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvG  186 (202)
T cd04726         127 VDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVG  186 (202)
T ss_pred             CCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEe
Confidence            6776664221  00  13345666666543 344454444446899999999999999884

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK08005 epimerase; Validated

Probab=83.61  E-value=5.2  Score=40.94  Aligned_cols=114  Identities=15%  Similarity=0.070  Sum_probs=62.0

Q ss_pred             HHHHHHHHHcCCe-EEeecCC--CHHHHHHhhhcCcccccceE--EecCCChhhHHHHHHHHHhCCCceEEEeeccCC--
Q psy3862          70 FEMAKHLAKHGLF-TTIHKYY--TLEEWKAFAVQNPDVIKHVA--VSSGISAKDLAGLKEILAALPEIEYICLDVANG--  142 (671)
Q Consensus        70 ~~lA~Ala~~ggl-gvIh~n~--~~Eeq~~~i~~~p~~~~~~~--v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G--  142 (671)
                      ......++++|.= =++|.-.  .+.+..+.+++.-   ..++  ++++++.+   .+..++....-+.+.+++..++  
T Consensus        71 ~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G---~k~GlAlnP~Tp~~---~i~~~l~~vD~VlvMsV~PGf~GQ  144 (210)
T PRK08005         71 QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIG---AKAGLALNPATPLL---PYRYLALQLDALMIMTSEPDGRGQ  144 (210)
T ss_pred             HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcC---CcEEEEECCCCCHH---HHHHHHHhcCEEEEEEecCCCccc
Confidence            4455667777644 4588542  2333344444321   1233  34555444   3444444322233344444332  


Q ss_pred             -CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         143 -YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       143 -~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                       ......++++++|+..+...+.+=...+.+.+..+.+||||.+|+++
T Consensus       145 ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~Gs  192 (210)
T PRK08005        145 QFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGR  192 (210)
T ss_pred             eecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEECh
Confidence             23566778888776555433322233578999999999999999853

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=83.61  E-value=0.97  Score=46.65  Aligned_cols=97  Identities=26%  Similarity=0.355  Sum_probs=61.6

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE----EE----------Eec-----------ccC-Ccchhhhhcc--
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC----TT----------RLK-----------NKT-SDFFLIQFYS--  213 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~----~t----------~v~-----------~~~-~~~~~i~~i~--  213 (671)
                      +-+||+-...|.+++ +.-||--|.--|-.|+.-    .+          ++.           +++ .+..++..+.  
T Consensus       126 PFVcGarnLgEAlRR-I~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~  204 (296)
T COG0214         126 PFVCGARNLGEALRR-ISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL  204 (296)
T ss_pred             ceecCcCcHHHHHHH-HhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh
Confidence            467776555566654 566788888888777630    11          111           111 2344444443  


Q ss_pred             -ccC----CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHH
Q psy3862         214 -CIP----QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECA  268 (671)
Q Consensus       214 -~~p----~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~  268 (671)
                       .+|    +||||+|...+.-++++|||||-||-|         +--.+.|  ...||.++.
T Consensus       205 grLPVvnFAAGGvATPADAALMM~LGadGVFVGSG---------IFKS~~P~~~A~AIV~A~  257 (296)
T COG0214         205 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSG---------IFKSSNPEKRAKAIVEAT  257 (296)
T ss_pred             CCCCeEeecccCcCChhHHHHHHHhCCCeEEeccc---------ccCCCCHHHHHHHHHHHH
Confidence             356    799999999999999999999999943         2233455  355666654

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=83.55  E-value=3.4  Score=42.77  Aligned_cols=185  Identities=25%  Similarity=0.279  Sum_probs=90.7

Q ss_pred             CCccccceecccC-cchhhhHHHHHHHhhhcCCcchhhhhhccceeec-ccc--------CCCceeeeecCCCccCCCCc
Q psy3862         245 GSVCTTRLKTGVG-YPQFSAVLECADAAHGLGGHIISFLTAMAQKIIN-DIK--------LDFKDVMLRPKRSTLKSRSE  314 (671)
Q Consensus       245 ~~~~~Tr~V~gv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~--------l~fdDVll~P~rst~~sr~e  314 (671)
                      |-.-.+|..+|-| ||...-..|+.+++   |-.|+-    +++|=.+ ...        |.-++|.+.|+-+--.+-+|
T Consensus        12 g~~f~SRLllGTgky~s~~~~~~av~as---g~~ivT----vAlRR~~~~~~~~~~~l~~l~~~~~~~LPNTaGc~taeE   84 (262)
T COG2022          12 GKTFDSRLLLGTGKYPSPAVLAEAVRAS---GSEIVT----VALRRVNATRPGGDGILDLLIPLGVTLLPNTAGCRTAEE   84 (262)
T ss_pred             CeeeeeeEEEecCCCCCHHHHHHHHHhc---CCceEE----EEEEeecccCCCcchHHHHhhhcCcEeCCCccccCCHHH
Confidence            3344689999988 77777777766655   333333    4555432 111        55667777777766555333


Q ss_pred             ccceeeeeeccCCceeeCcceEecC----CCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeeccc
Q psy3862         315 VDITRTFTFRNSGKTYQGVPIIAAN----MDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCT  390 (671)
Q Consensus       315 Vdl~~~l~~~~s~~~~~~iPiIaa~----MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~  390 (671)
                      -=.+-++...--+.-|.++-||+-.    =|.+.+.+-|+.|.+.|-.-.-+-+.|+                       
T Consensus        85 Av~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~-----------------------  141 (262)
T COG2022          85 AVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDP-----------------------  141 (262)
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCH-----------------------
Confidence            3222222211112334445555432    1344444444444444322222222221                       


Q ss_pred             ChhhHHHHHHcCCcEEEEcccccccccccccccccccccccccccccccc--CceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         391 SPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYL--GGVVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       391 ~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                        --..+|.++|+-.++=-+.--|-..-..+..        ++..+++..  +-+|++|+=.+-+.+.+|+.|+|+|++-
T Consensus       142 --v~arrLee~GcaavMPl~aPIGSg~G~~n~~--------~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N  211 (262)
T COG2022         142 --VLARRLEEAGCAAVMPLGAPIGSGLGLQNPY--------NLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN  211 (262)
T ss_pred             --HHHHHHHhcCceEeccccccccCCcCcCCHH--------HHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence              1123445566655553322222211111110        011111111  1156999888888888999999999886


Q ss_pred             c
Q psy3862         469 G  469 (671)
Q Consensus       469 ~  469 (671)
                      .
T Consensus       212 T  212 (262)
T COG2022         212 T  212 (262)
T ss_pred             h
Confidence            4

>PRK04302 triosephosphate isomerase; Provisional

Probab=83.50  E-value=5.8  Score=40.60  Aligned_cols=113  Identities=14%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             HHHHHHhCCCceEEEeeccC--CCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCceEEE
Q psy3862         122 LKEILAALPEIEYICLDVAN--GYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSVCTT  197 (671)
Q Consensus       122 l~~l~~a~~~~d~Ivld~a~--G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t  197 (671)
                      ++.+.+.  +++.+++..+.  -......+.++..++ + ....+ --+.+.++++.+.+.|.|+|-+..  +.|+... 
T Consensus        78 ~~~l~~~--G~~~vii~~ser~~~~~e~~~~v~~a~~-~-Gl~~I-~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~-  151 (223)
T PRK04302         78 PEAVKDA--GAVGTLINHSERRLTLADIEAVVERAKK-L-GLESV-VCVNNPETSAAAAALGPDYVAVEPPELIGTGIP-  151 (223)
T ss_pred             HHHHHHc--CCCEEEEeccccccCHHHHHHHHHHHHH-C-CCeEE-EEcCCHHHHHHHhcCCCCEEEEeCccccccCCC-
Confidence            3444444  77777765320  011223333443333 2 12222 234567888888899999997643  2332110 


Q ss_pred             EecccCCc--chhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKTSD--FFLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~~~--~~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       +....|.  ...++.+.    .+|  .+|||.+.+.+..++++||||+-||
T Consensus       152 -~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG  202 (223)
T PRK04302        152 -VSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA  202 (223)
T ss_pred             -CCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence             0000000  00111121    245  6999999999999999999999998

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=83.37  E-value=53  Score=33.74  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHH---HhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIR---EMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr---~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~  195 (671)
                      .+.+.+.+..  +++.+.+-.-+.......+..++++   +.|- ..++.     -++.+.+++.|+|-|=+....  ..
T Consensus        24 ~~~ve~al~~--Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~-v~liI-----Nd~~dlA~~~~AdGVHlGq~D--~~   93 (211)
T COG0352          24 LEWVEAALKG--GVTAVQLREKDLSDEEYLALAEKLRALCQKYG-VPLII-----NDRVDLALAVGADGVHLGQDD--MP   93 (211)
T ss_pred             HHHHHHHHhC--CCeEEEEecCCCChHHHHHHHHHHHHHHHHhC-CeEEe-----cCcHHHHHhCCCCEEEcCCcc--cc
Confidence            4666677776  7777766544433344344444443   4452 22222     245666679999999442110  00


Q ss_pred             EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHH
Q psy3862         196 TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLE  266 (671)
Q Consensus       196 ~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~  266 (671)
                      .....+..++        ...++-.+-+.+.++.+.+.|||-|  |+  |.+=-|.-..+- .|+....++
T Consensus        94 ~~~ar~~~~~--------~~iIG~S~h~~eea~~A~~~g~DYv--~~--GpifpT~tK~~~-~~~G~~~l~  151 (211)
T COG0352          94 LAEARELLGP--------GLIIGLSTHDLEEALEAEELGADYV--GL--GPIFPTSTKPDA-PPLGLEGLR  151 (211)
T ss_pred             hHHHHHhcCC--------CCEEEeecCCHHHHHHHHhcCCCEE--EE--CCcCCCCCCCCC-CccCHHHHH
Confidence            0001111110        1125667779999999999999976  33  345455555555 666555554

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=83.36  E-value=14  Score=40.23  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=35.0

Q ss_pred             HHHcCCcEEEEccc---cccccccccccccccccccccccccccccC--ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         398 AMGAGADFVMLGGM---FAGHDQSGGELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       398 l~~aG~d~i~id~~---a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +.++|+|.|.+.+.   ..|++...--.+  ....+..+..+++...  .++.-|-+.+.+-++.+..|||+||+|.
T Consensus       160 l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~--~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmIGR  234 (333)
T PRK11815        160 VAEAGCDTFIVHARKAWLKGLSPKENREI--PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGR  234 (333)
T ss_pred             HHHhCCCEEEEcCCchhhcCCCccccccC--CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEEcH
Confidence            35789999998642   234431110000  0001122222333221  2444444667776665545899999996

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=83.30  E-value=14  Score=41.64  Aligned_cols=110  Identities=26%  Similarity=0.310  Sum_probs=61.2

Q ss_pred             HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE--Eecc-HHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862         121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG--NVVT-GEMVEELILSGADVIKVGIGPGSVCTT  197 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g--~v~t-~e~a~~Li~AGaD~IvVdga~G~~~~t  197 (671)
                      +++...++  +++.+++.... ......+.++..++..  ..++.+  +..+ .++++.+.+.|+|+|.+.  +|..  +
T Consensus        73 ~v~~a~~a--GAdgV~v~g~~-~~~~~~~~i~~a~~~G--~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~--pg~~--~  143 (430)
T PRK07028         73 EVEMAAKA--GADIVCILGLA-DDSTIEDAVRAARKYG--VRLMADLINVPDPVKRAVELEELGVDYINVH--VGID--Q  143 (430)
T ss_pred             HHHHHHHc--CCCEEEEecCC-ChHHHHHHHHHHHHcC--CEEEEEecCCCCHHHHHHHHHhcCCCEEEEE--eccc--h
Confidence            55556666  77887753211 1122334455544422  223333  3334 577888899999999764  3321  0


Q ss_pred             EecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .... ...+..+..+.   .+|  +.||| +.+.+..++++|||++-+|
T Consensus       144 ~~~~-~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vG  190 (430)
T PRK07028        144 QMLG-KDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVG  190 (430)
T ss_pred             hhcC-CChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence            0000 00111122221   255  68999 6788999999999999877

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=83.25  E-value=5.6  Score=40.97  Aligned_cols=43  Identities=21%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      -.+.++++.+..+...-++|.+.+.++++.++++|||-+++.+
T Consensus        61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt  103 (229)
T PF00977_consen   61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGT  103 (229)
T ss_dssp             HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred             HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence            4467777777766445677788999999999999999999977

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=83.13  E-value=3  Score=40.19  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=22.0

Q ss_pred             eeccccCchhHHHHHHcCCcEEEECccccC
Q psy3862         444 VDGGCTSPGDVAKAMGAGADFVMLGGMFAG  473 (671)
Q Consensus       444 i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G  473 (671)
                      +.|||+.+.+..++.+.|+|.|    .+||
T Consensus        98 ~~GGvip~~d~~~l~~~G~~~i----f~pg  123 (143)
T COG2185          98 VVGGVIPPGDYQELKEMGVDRI----FGPG  123 (143)
T ss_pred             eecCccCchhHHHHHHhCccee----eCCC
Confidence            4899999999777889999988    5777

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=83.10  E-value=9.6  Score=41.41  Aligned_cols=64  Identities=19%  Similarity=0.127  Sum_probs=36.3

Q ss_pred             HHHcCCcEEEEcccc---ccccccc--------cccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEE
Q psy3862         398 AMGAGADFVMLGGMF---AGHDQSG--------GELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVM  466 (671)
Q Consensus       398 l~~aG~d~i~id~~a---~gh~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~  466 (671)
                      +.++|+|.|.|.+-.   +|++...        .+.+..++..+|.+        .+|.-|.|.+.+-+..+..|||+||
T Consensus       150 l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~i--------pVi~NGdI~s~~da~~~l~g~dgVM  221 (318)
T TIGR00742       150 VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHL--------TIEINGGIKNSEQIKQHLSHVDGVM  221 (318)
T ss_pred             HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCC--------cEEEECCcCCHHHHHHHHhCCCEEE
Confidence            357899999988642   4554321        11122222222111        1444455677777665446999999


Q ss_pred             ECc
Q psy3862         467 LGG  469 (671)
Q Consensus       467 vG~  469 (671)
                      +|.
T Consensus       222 igR  224 (318)
T TIGR00742       222 VGR  224 (318)
T ss_pred             ECH
Confidence            996

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=82.99  E-value=8  Score=39.89  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-cc---CC-ccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CI---PQ-AGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~---p~-aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                      +-++.|.++|+|.|.+.+....-.....   ......+..+. ..   +. +-.-...+.++.+.++|++.+++-+. +|
T Consensus        23 ~i~~~L~~~GV~~IEvg~~~~~~~~p~~---~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~-~s   98 (265)
T cd03174          23 EIAEALDEAGVDSIEVGSGASPKAVPQM---EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDS-AS   98 (265)
T ss_pred             HHHHHHHHcCCCEEEeccCcCccccccC---CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEe-cC
Confidence            5577888999999988664322000000   00111111111 11   11 11111188899999999999999974 33


Q ss_pred             ccccceecccCcc-hhhhHHHHHHHhhhcCCc
Q psy3862         247 VCTTRLKTGVGYP-QFSAVLECADAAHGLGGH  277 (671)
Q Consensus       247 ~~~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~~  277 (671)
                      -.--+...+.+.+ .+..+.++.+.++++|.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~  130 (265)
T cd03174          99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLE  130 (265)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence            2111222233332 467778888888876643

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=82.55  E-value=3.5  Score=45.53  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                      +-++.|.++|+|.|-+.. +.++.     ++.+.+..++.        ...+..-...+.++.++++|++.|++-+...-
T Consensus        26 ~ia~~L~~~Gv~~IEvG~-p~~~~~~~e~i~~i~~~~~~~--------~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd   96 (363)
T TIGR02090        26 EIARKLDELGVDVIEAGF-PIASEGEFEAIKKISQEGLNA--------EICSLARALKKDIDKAIDCGVDSIHTFIATSP   96 (363)
T ss_pred             HHHHHHHHcCCCEEEEeC-CCCChHHHHHHHHHHhcCCCc--------EEEEEcccCHHHHHHHHHcCcCEEEEEEcCCH
Confidence            567788899999998743 22110     00111100000        01344456788999999999999988764333


Q ss_pred             ccccceecccCcch-hhhHHHHHHHhhhcC
Q psy3862         247 VCTTRLKTGVGYPQ-FSAVLECADAAHGLG  275 (671)
Q Consensus       247 ~~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~  275 (671)
                      ... +...+....+ +..+.++.+.|+++|
T Consensus        97 ~~~-~~~~~~~~~~~~~~~~~~i~~ak~~G  125 (363)
T TIGR02090        97 IHL-KYKLKKSRDEVLEKAVEAVEYAKEHG  125 (363)
T ss_pred             HHH-HHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence            221 1123333332 456778888887665

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=82.32  E-value=25  Score=36.38  Aligned_cols=116  Identities=14%  Similarity=0.153  Sum_probs=60.5

Q ss_pred             HHHHHHHHHcCCe-EEeecCC--CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCC---C
Q psy3862          70 FEMAKHLAKHGLF-TTIHKYY--TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANG---Y  143 (671)
Q Consensus        70 ~~lA~Ala~~ggl-gvIh~n~--~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G---~  143 (671)
                      ......++++|.= =++|.-.  .+.+..+++++.. ...-+.++++++.+   .+..++....-+.+.+++..++   .
T Consensus        75 ~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g-~k~GlalnP~T~~~---~i~~~l~~vD~VlvMtV~PGf~GQ~f  150 (223)
T PRK08745         75 DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHG-CQAGLVLNPATPVD---ILDWVLPELDLVLVMSVNPGFGGQAF  150 (223)
T ss_pred             HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCC-CceeEEeCCCCCHH---HHHHHHhhcCEEEEEEECCCCCCccc
Confidence            4455667777644 4588532  2333344454431 11112234445443   4444444322233345554332   2


Q ss_pred             ChHHHHHHHHHHHh----CCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         144 TQTFVDFVRRIREM----YPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       144 ~~~~~~~ik~lr~~----~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .....+.++++++.    .+...+.+-...+.+.++.+.++|||++|+++
T Consensus       151 i~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GS  200 (223)
T PRK08745        151 IPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGS  200 (223)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence            35556667666543    22322333333578999999999999999853

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.26  E-value=5.6  Score=42.51  Aligned_cols=75  Identities=13%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccc
Q psy3862         343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG  420 (671)
Q Consensus       343 V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~  420 (671)
                      |-+.+-|.+..+.|.=.++=-|+|+|+..+.+...+... .+-++|+++++.+....+.|+|+|.+.  +--||-..+
T Consensus       201 v~tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~~~~~-~leaSGGI~~~ni~~yA~tGVD~Is~G--althsa~~~  275 (281)
T PRK06106        201 VDTLDQLEEALELGVDAVLLDNMTPDTLREAVAIVAGRA-ITEASGRITPETAPAIAASGVDLISVG--WLTHSAPVL  275 (281)
T ss_pred             eCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHhCCCc-eEEEECCCCHHHHHHHHhcCCCEEEeC--hhhcCCCcc
Confidence            346788899999999888899999999999988665433 378899999999999999999999985  344443333

>PRK15452 putative protease; Provisional

Probab=82.24  E-value=3.7  Score=46.65  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=83.1

Q ss_pred             cccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeecc--------
Q psy3862         221 VVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIIND--------  292 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------  292 (671)
                      +.+.+++++++++|||+|.+|...=+   .|.-..  .-...-+.++.+.||++|++|...+..+-.  +++        
T Consensus        10 ag~~e~l~aAi~~GADaVY~G~~~~~---~R~~~~--~f~~edl~eav~~ah~~g~kvyvt~n~i~~--e~el~~~~~~l   82 (443)
T PRK15452         10 AGTLKNMRYAFAYGADAVYAGQPRYS---LRVRNN--EFNHENLALGINEAHALGKKFYVVVNIAPH--NAKLKTFIRDL   82 (443)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCccc---hhhhcc--CCCHHHHHHHHHHHHHcCCEEEEEecCcCC--HHHHHHHHHHH
Confidence            45679999999999999999954322   221110  011234777888889988876542211100  111        


Q ss_pred             ---ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeE-EEccCCCHH
Q psy3862         293 ---IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFT-TIHKYYTLE  368 (671)
Q Consensus       293 ---~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglg-vihr~~~~e  368 (671)
                         ..+..|-|++.       ....+.+-+        ....++||.+|--=.|++...+..+.++|.-. ++.+-.+++
T Consensus        83 ~~l~~~gvDgvIV~-------d~G~l~~~k--------e~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~  147 (443)
T PRK15452         83 EPVIAMKPDALIMS-------DPGLIMMVR--------EHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLE  147 (443)
T ss_pred             HHHHhCCCCEEEEc-------CHHHHHHHH--------HhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHH
Confidence               12233333332       111111111        12236899998888899999999999998754 566999999


Q ss_pred             HHHHHHhcCcc
Q psy3862         369 EWKAFAVQNPD  379 (671)
Q Consensus       369 ~~~~~v~~~~~  379 (671)
                      |..+...+.++
T Consensus       148 EI~~i~~~~~~  158 (443)
T PRK15452        148 EIEEIRQQCPD  158 (443)
T ss_pred             HHHHHHhhCCC
Confidence            99887655543

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=82.21  E-value=15  Score=37.90  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=88.1

Q ss_pred             ceEEecCCCccc-cHHHHHHHHHcCCeEEeecC-CCH----HHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHHhC
Q psy3862          57 VPIIAANMDTVG-TFEMAKHLAKHGLFTTIHKY-YTL----EEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILAAL  129 (671)
Q Consensus        57 ~Piv~a~M~~vt-~~~lA~Ala~~gglgvIh~n-~~~----Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~a~  129 (671)
                      .|+ .++..+.. ..++|..+... |.--+|-- .+.    +.+...+++.. .+.-|+.++-|+  +..+.+.+++.. 
T Consensus        25 ~p~-~~~~~~~~dp~~~a~~~~~~-g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGi--r~~edv~~~l~~-   99 (233)
T cd04723          25 RPI-TSNLCSTSDPLDVARAYKEL-GFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGI--RSLENAQEWLKR-   99 (233)
T ss_pred             ccc-ccCcccCCCHHHHHHHHHHC-CCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCc--CCHHHHHHHHHc-
Confidence            455 34444333 46788888877 44334421 110    11111121111 111245554444  456777777776 


Q ss_pred             CCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE------Ee------c-cHHHHHHHHHCCCcE-EEECc-CCCce
Q psy3862         130 PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG------NV------V-TGEMVEELILSGADV-IKVGI-GPGSV  194 (671)
Q Consensus       130 ~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g------~v------~-t~e~a~~Li~AGaD~-IvVdg-a~G~~  194 (671)
                       +++-+++.+.-  ..+  ++++++-+.||.-.++++      .+      . -.+.++.+.+. ++- ++.|. .-|+ 
T Consensus       100 -Ga~~viigt~~--~~~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~-  172 (233)
T cd04723         100 -GASRVIVGTET--LPS--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS-  172 (233)
T ss_pred             -CCCeEEEccee--ccc--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc-
Confidence             66666666442  122  555555555654122221      11      0 23556777777 874 44444 1121 


Q ss_pred             EEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         195 CTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       195 ~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                            ..-+++.++.-+.   .+|  ++|||.+.+.++.++.+||+++-||
T Consensus       173 ------~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG  218 (233)
T cd04723         173 ------GQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVA  218 (233)
T ss_pred             ------CCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence                  1123444433332   346  7999999999999999999999998

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.17  E-value=6.5  Score=42.28  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c--cCCcccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C--IPQAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~--~p~aGnV~t  223 (671)
                      ..+.++.+++..|. .+|---+.|.++++.++++|||+|-+|--.-.    .+++      .++.+. .  +-++||| |
T Consensus       192 i~~av~~~r~~~~~-~kIeVEvetleea~eA~~aGaDiImLDnmspe----~l~~------av~~~~~~~~lEaSGGI-t  259 (294)
T PRK06978        192 VGAALDAAFALNAG-VPVQIEVETLAQLETALAHGAQSVLLDNFTLD----MMRE------AVRVTAGRAVLEVSGGV-N  259 (294)
T ss_pred             HHHHHHHHHHhCCC-CcEEEEcCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHhhcCCeEEEEECCC-C
Confidence            34555655554443 34555667899999999999999988742210    0110      001111 1  1278888 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.+....|+|.+-+|
T Consensus       260 ~~ni~~yA~tGVD~IS~g  277 (294)
T PRK06978        260 FDTVRAFAETGVDRISIG  277 (294)
T ss_pred             HHHHHHHHhcCCCEEEeC
Confidence            899999999999999877

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=81.88  E-value=6.6  Score=40.80  Aligned_cols=58  Identities=22%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceE-EEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVI-IAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~l-i~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      +..++.++-.-|-..+..+.+.+.++...+..+ ++|.+.+.|+|+.+.++|||.||++
T Consensus       153 g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvG  211 (230)
T PF01884_consen  153 GMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVG  211 (230)
T ss_dssp             T-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEES
T ss_pred             CCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence            557888886334444454444455554555555 5568899999999999999999884

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=81.74  E-value=9.2  Score=39.48  Aligned_cols=27  Identities=30%  Similarity=0.324  Sum_probs=25.1

Q ss_pred             cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         215 IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +|  ++|||.+.+-.+.+..+|++|+-+|
T Consensus       183 ~pviasGGv~~~~Dl~~l~~~g~~gvivg  211 (228)
T PRK04128        183 EEFIYAGGVSSAEDVKKLAEIGFSGVIIG  211 (228)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            45  7999999999999999999999998

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=81.32  E-value=15  Score=40.13  Aligned_cols=87  Identities=17%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             eccHHHHHHHHHCCCcEEEECc---CCCceEEEEecccCCcchhhhhc-c--ccC--CccccccHHHHHHHHHcCCCEEE
Q psy3862         168 VVTGEMVEELILSGADVIKVGI---GPGSVCTTRLKNKTSDFFLIQFY-S--CIP--QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdg---a~G~~~~t~v~~~~~~~~~i~~i-~--~~p--~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      ..+...+++|.+.|+-+|---+   +.|..    +.    +-+.+..+ .  .+|  +.+||.+++.++.++++|||||-
T Consensus       205 ~~d~~~a~~l~~~g~~avmPl~~pIGsg~g----v~----~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL  276 (326)
T PRK11840        205 SDDPIAAKRLEDAGAVAVMPLGAPIGSGLG----IQ----NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVL  276 (326)
T ss_pred             CCCHHHHHHHHhcCCEEEeeccccccCCCC----CC----CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            4678999999999995553311   22211    11    11112222 1  244  79999999999999999999998


Q ss_pred             EcccCCCccccceecccCcc--hhhhHHHHHHHh
Q psy3862         240 VGIGPGSVCTTRLKTGVGYP--QFSAVLECADAA  271 (671)
Q Consensus       240 VG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~  271 (671)
                      +-        |-++ -...|  ++.|...+.+|-
T Consensus       277 ~n--------SaIa-~a~dPv~Ma~A~~~av~aG  301 (326)
T PRK11840        277 MN--------TAIA-EAKNPVLMARAMKLAVEAG  301 (326)
T ss_pred             Ec--------ceec-cCCCHHHHHHHHHHHHHHH
Confidence            76        4443 44555  445555554443

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=81.16  E-value=13  Score=38.68  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      -.+.++++.+.. ...-++|.+.+.+.++.++++|||-+++.+
T Consensus        62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT  103 (241)
T PRK14114         62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS  103 (241)
T ss_pred             hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence            345566664443 224566778888888888899998888876

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=81.13  E-value=35  Score=36.04  Aligned_cols=90  Identities=17%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhh----hhcc-ccC----CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLI----QFYS-CIP----QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i----~~i~-~~p----~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      +-++.|.++|+|.|-+.-..++.........+.+...+    +..+ ..+    .-.+..+-+-...+.+.|.|.||+.+
T Consensus        24 ~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~  103 (266)
T cd07944          24 AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF  103 (266)
T ss_pred             HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec
Confidence            56788999999999987422211000000001111000    1110 111    12233456778888899999999985


Q ss_pred             cCCCccccceecccCcchhhhHHHHHHHhhhcC
Q psy3862         243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG  275 (671)
Q Consensus       243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~  275 (671)
                      ..              -.+..+.++.+.++++|
T Consensus       104 ~~--------------~~~~~~~~~i~~ak~~G  122 (266)
T cd07944         104 HK--------------HEFDEALPLIKAIKEKG  122 (266)
T ss_pred             cc--------------ccHHHHHHHHHHHHHCC
Confidence            22              14677777788887655

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=81.03  E-value=7  Score=41.80  Aligned_cols=77  Identities=16%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             CCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccc
Q psy3862         343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL  422 (671)
Q Consensus       343 V~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~  422 (671)
                      |-+.+-|.+..+.|.=.++=-|+|||+..+.+...++.. .+-++|+++.+.+++..+.|+|+|.+.  +--||...+++
T Consensus       200 v~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~~~~-~leaSGgI~~~ni~~yA~tGVD~Is~g--alths~~~~D~  276 (281)
T PRK06543        200 VDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVDGRA-IVEASGNVNLNTVGAIASTGVDVISVG--ALTHSVRALDL  276 (281)
T ss_pred             eCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhCCCe-EEEEECCCCHHHHHHHHhcCCCEEEeC--ccccCCcccce
Confidence            457888999999999888889999999999987655422 578899999999999999999999985  45565544443

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=80.96  E-value=15  Score=41.94  Aligned_cols=90  Identities=18%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             HHHHHHHHCCCcEEEECcCCC-ceEEEEecccCCcchhhhhcc-ccC--------Ccccccc---------HHHHHHHHH
Q psy3862         172 EMVEELILSGADVIKVGIGPG-SVCTTRLKNKTSDFFLIQFYS-CIP--------QAGNVVT---------GEMVEELIL  232 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G-~~~~t~v~~~~~~~~~i~~i~-~~p--------~aGnV~t---------~~~a~~li~  232 (671)
                      +-++.|.++|++.|-+.++.+ ..|...+++.  +...+..+. .+|        -+-|+..         .+-.+.+++
T Consensus        30 ~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~--p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~  107 (448)
T PRK12331         30 PILEKLDNAGYHSLEMWGGATFDACLRFLNED--PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVE  107 (448)
T ss_pred             HHHHHHHHcCCCEEEecCCccchhhhccCCCC--HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHH
Confidence            567788899999998854322 1232222211  111111111 111        1223322         245577889


Q ss_pred             cCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862         233 SGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH  277 (671)
Q Consensus       233 aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~  277 (671)
                      +|+|.+++.....-+              .-+.++.++|++.|.+
T Consensus       108 ~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~  138 (448)
T PRK12331        108 NGIDIIRIFDALNDV--------------RNLETAVKATKKAGGH  138 (448)
T ss_pred             CCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCe
Confidence            999999998654332              1366677888877654

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=80.63  E-value=15  Score=38.75  Aligned_cols=124  Identities=17%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             cceEecCCCCCCCHHHHHHHHHcCCeEE--EccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcc
Q psy3862         333 VPIIAANMDTVGTFEMAKHLAKHGLFTT--IHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGG  410 (671)
Q Consensus       333 iPiIaa~MDtV~~~~mA~~la~~Gglgv--ihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~  410 (671)
                      +|++.  =|.+.++-.-.+=..+|.=++  |-...+.++..+++....++ ---.-.=+-+++|+++.+++|+++|.|. 
T Consensus       110 ~PvL~--KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~l-Gle~lVEVh~~~El~~al~~~a~iiGIN-  185 (254)
T PF00218_consen  110 LPVLR--KDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSL-GLEALVEVHNEEELERALEAGADIIGIN-  185 (254)
T ss_dssp             S-EEE--ES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTT-SEEEEE-
T ss_pred             CCccc--ccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHc-CCCeEEEECCHHHHHHHHHcCCCEEEEe-
Confidence            56655  466666665555455554443  44777777766665432111 0000011225688999999999999987 


Q ss_pred             ccccccccccccccccccccccccccccccCc----eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         411 MFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG----VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       411 ~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .-+=|+. ..++ +...       .+..++++    +-..|+-...++..+..+|+|+|.||-
T Consensus       186 nRdL~tf-~vd~-~~~~-------~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe  239 (254)
T PF00218_consen  186 NRDLKTF-EVDL-NRTE-------ELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGE  239 (254)
T ss_dssp             SBCTTTC-CBHT-HHHH-------HHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESH
T ss_pred             CccccCc-ccCh-HHHH-------HHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECH
Confidence            1111111 0110 0011       11222222    445675444444445699999999994

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=80.54  E-value=5.3  Score=41.82  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             HHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862         226 MVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS  280 (671)
Q Consensus       226 ~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~  280 (671)
                      .++.++++|||+|.+-.-.|+- +.       +-++.-+.++.++|+++|+++|.
T Consensus        95 ~v~~al~~Ga~~v~~~~~~g~~-~~-------~~~~~~~~~i~~~~~~~g~~liv  141 (258)
T TIGR01949        95 TVEDAIRMGADAVSIHVNVGSD-TE-------WEQIRDLGMIAEICDDWGVPLLA  141 (258)
T ss_pred             eHHHHHHCCCCEEEEEEecCCc-hH-------HHHHHHHHHHHHHHHHcCCCEEE
Confidence            4788999999999998877751 11       23556667777778776655443

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=80.50  E-value=12  Score=40.73  Aligned_cols=27  Identities=37%  Similarity=0.534  Sum_probs=22.8

Q ss_pred             eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ++++|+-.+.|++++|+.|||+|.+-.
T Consensus       253 ivdAGIg~~sda~~AmelGadgVL~nS  279 (326)
T PRK11840        253 LVDAGVGTASDAAVAMELGCDGVLMNT  279 (326)
T ss_pred             EEeCCCCCHHHHHHHHHcCCCEEEEcc
Confidence            348998778888889999999998874

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=80.09  E-value=6.6  Score=41.90  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      ..+++.+.+++  ++|.|.+|.  ..++.+.+.++.+++..|...+.+....+.+.++...+.|+|+|++.
T Consensus       197 tleea~ea~~~--GaDiI~lDn--~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~g  263 (277)
T TIGR01334       197 TIEQALTVLQA--SPDILQLDK--FTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITS  263 (277)
T ss_pred             CHHHHHHHHHc--CcCEEEECC--CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence            45677777777  788898883  34677777777766556766666555578999999999999999763

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	671
2a7r_A	366	Crystal Structure Of Human Guanosine Monophosphate		1e-86
2a7r_A	366	Crystal Structure Of Human Guanosine Monophosphate		1e-52
2a7r_A	366	Crystal Structure Of Human Guanosine Monophosphate		5e-18
2bzn_A	351	Crystal Structure Of Human Guanosine Monophosphate		4e-84
2bzn_A	351	Crystal Structure Of Human Guanosine Monophosphate		1e-52
2bzn_A	351	Crystal Structure Of Human Guanosine Monophosphate		1e-17
2ble_A	367	Structure Of Human Guanosine Monophosphate Reductas		6e-82
2ble_A	367	Structure Of Human Guanosine Monophosphate Reductas		4e-54
2ble_A	367	Structure Of Human Guanosine Monophosphate Reductas		5e-19
3r2g_A	361	Crystal Structure Of Inosine 5' Monophosphate Dehyd		3e-30
3r2g_A	361	Crystal Structure Of Inosine 5' Monophosphate Dehyd		4e-05
1ypf_A	336	Crystal Structure Of Guac (Ba5705) From Bacillus An		2e-23
1ypf_A	336	Crystal Structure Of Guac (Ba5705) From Bacillus An		2e-18
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-20
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		4e-07
4fo4_A	366	Inosine 5'-Monophosphate Dehydrogenase From Vibrio		3e-19
4fo4_A	366	Inosine 5'-Monophosphate Dehydrogenase From Vibrio		2e-14
3khj_A	361	C. Parvum Inosine Monophosphate Dehydrogenase Bound		1e-18
3khj_A	361	C. Parvum Inosine Monophosphate Dehydrogenase Bound		4e-08
4fez_A	388	Inosine 5'-Monophosphate Dehydrogenase From Vibrio		2e-17
4fez_A	388	Inosine 5'-Monophosphate Dehydrogenase From Vibrio		2e-14
1eep_A	404	2.4 A Resolution Crystal Structure Of Borrelia Burg		2e-17
1eep_A	404	2.4 A Resolution Crystal Structure Of Borrelia Burg		4e-15
3ffs_A	400	The Crystal Structure Of Cryptosporidium Parvum Ino		3e-17
3ffs_A	400	The Crystal Structure Of Cryptosporidium Parvum Ino		3e-12
3ffs_A	400	The Crystal Structure Of Cryptosporidium Parvum Ino		7e-04
3tsb_A	511	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		3e-17
3tsb_A	511	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		8e-05
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		1e-16
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		6e-04
4avf_A	490	Crystal Structure Of Pseudomonas Aeruginosa Inosine		1e-15
4avf_A	490	Crystal Structure Of Pseudomonas Aeruginosa Inosine		3e-04
3zfh_A	510	Crystal Structure Of Pseudomonas Aeruginosa Inosine		1e-15
3zfh_A	510	Crystal Structure Of Pseudomonas Aeruginosa Inosine		2e-04
3usb_A	511	Crystal Structure Of Bacillus Anthracis Inosine Mon		1e-15
3usb_A	511	Crystal Structure Of Bacillus Anthracis Inosine Mon		8e-14
3usb_A	511	Crystal Structure Of Bacillus Anthracis Inosine Mon		1e-04
1zfj_A	491	Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.		1e-13
1zfj_A	491	Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.		6e-04
1jr1_A	514	Crystal Structure Of Inosine Monophosphate Dehydrog		2e-11
1b3o_A	514	Ternary Complex Of Human Type-Ii Inosine Monophosph		2e-11
4fxs_A	496	Inosine 5'-Monophosphate Dehydrogenase From Vibrio		4e-11
4af0_A	556	Crystal Structure Of Cryptococcal Inosine Monophosp		8e-11
4af0_A	556	Crystal Structure Of Cryptococcal Inosine Monophosp		4e-08
4af0_B	556	Crystal Structure Of Cryptococcal Inosine Monophosp		8e-11
4af0_B	556	Crystal Structure Of Cryptococcal Inosine Monophosp		1e-08
1jcn_A	514	Binary Complex Of Human Type-I Inosine Monophosphat		6e-09
1me8_A	503	Inosine Monophosphate Dehydrogenase (Impdh) From Tr		5e-07
1me7_A	503	Inosine Monophosphate Dehydrogenase (Impdh) From Tr		5e-07
1pvn_A	376	The Crystal Structure Of The Complex Between Imp De		1e-06
1lrt_A	376	Crystal Structure Of Ternary Complex Of Tritrichomo		1e-06

>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 (Gmpr2) Length = 366

Iteration: 1
 Score =  317 bits (812), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/268 (58%), Positives = 188/268 (70%), Gaps = 53/268 (19%)
Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           I ND+KLDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 22  IDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 81
Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct: 82  AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 141
Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 142 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 201
Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SVCTTR K                                                    
Sbjct: 202 SVCTTRKK---------------------------------------------------- 209
Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
            TGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 210 -TGVGYPQLSAVMECADAAHGLKGHIIS 236

>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 (Gmpr2) Length = 366

Iteration: 1
 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGELIE+DGKK KLFYGMSS  AM 
Sbjct: 235 ISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMK 294
Query: 503 KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC 562
           K+AGGVAEYRA+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+KLKEL RR TFIR 
Sbjct: 295 KYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRV 354
Query: 563 TAQLNNV 569
           T Q+N +
Sbjct: 355 TQQVNPI 361

>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 (Gmpr2) Length = 366

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669
           A+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+KLKEL RR TFIR T Q+N ++
Sbjct: 305 ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIF 362

>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 Gmpr2 In Complex With Imp Length = 351

Iteration: 1
 Score =  309 bits (791), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 152/262 (58%), Positives = 183/262 (69%), Gaps = 53/262 (20%)
Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
           LDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEMAK L K
Sbjct: 20  LDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVLCK 79
Query: 79  HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLD 138
             LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++IL A+P+++YICLD
Sbjct: 80  FSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLD 139
Query: 139 VANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 198
           VANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPGSVCTTR
Sbjct: 140 VANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTR 199
Query: 199 LKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGY 258
            K                                                     TGVGY
Sbjct: 200 KK-----------------------------------------------------TGVGY 206
Query: 259 PQFSAVLECADAAHGLGGHIIS 280
           PQ SAV+ECADAAHGL GHIIS
Sbjct: 207 PQLSAVMECADAAHGLKGHIIS 228

>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 Gmpr2 In Complex With Imp Length = 351

Iteration: 1
 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 109/125 (87%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGELIE+DGKK KLFYGMSS  AM 
Sbjct: 227 ISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMK 286
Query: 503 KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC 562
           K+AGGVAEYRA+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+KLKEL RR TFIR 
Sbjct: 287 KYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRV 346
Query: 563 TAQLN 567
           T Q+N
Sbjct: 347 TQQVN 351

>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 Gmpr2 In Complex With Imp Length = 351

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN 666
           A+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+KLKEL RR TFIR T Q+N
Sbjct: 297 ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVN 351

>pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1 In Complex With Gmp Length = 367

Iteration: 1
 Score =  301 bits (772), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 185/269 (68%), Gaps = 53/269 (19%)
Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  D+KLDFKDV+LRPKRS+LKSR+EVD+ RTFTFRNS +TY G+PII ANMDTVGTFE
Sbjct: 25  RIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFE 84
Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE 131
           MA  +++H +FT IHK+Y+L++WK FA  +P+ +++VAVSSG    DL  +  IL A+P+
Sbjct: 85  MAAVMSQHSMFTAIHKHYSLDDWKLFATNHPECLQNVAVSSGSGQNDLEKMTSILEAVPQ 144
Query: 132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191
           +++ICLDVANGY++ FV+FV+ +R  +P+H I+AGNVVTGEMVEELILSGAD+IKVG+GP
Sbjct: 145 VKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGP 204
Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 251
           GSVCTTR K                                                   
Sbjct: 205 GSVCTTRTK--------------------------------------------------- 213
Query: 252 LKTGVGYPQFSAVLECADAAHGLGGHIIS 280
             TGVGYPQ SAV+ECAD+AHGL GHIIS
Sbjct: 214 --TGVGYPQLSAVIECADSAHGLKGHIIS 240

>pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1 In Complex With Gmp Length = 367

Iteration: 1
 Score =  209 bits (532), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGGCT PGDVAKA GAGADFVMLGGMF+GH +  GE+IE++G+K+KLFYGMSS TAM+
Sbjct: 239 ISDGGCTCPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGRKLKLFYGMSSDTAMN 298
Query: 503 KHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC 562
           KHAGGVAEYRA+EGKTV+VPY+GDV +T+ DILGGLRS CTYVGA+KLKEL RRATFIR 
Sbjct: 299 KHAGGVAEYRASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRV 358
Query: 563 TAQLNNV 569
           T Q N V
Sbjct: 359 TQQHNTV 365

>pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1 In Complex With Gmp Length = 367

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNMY 669
           A+EGKTV+VPY+GDV +T+ DILGGLRS CTYVGA+KLKEL RRATFIR T Q N ++
Sbjct: 309 ASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVF 366

>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate Dehydrogenase From Legionella Pneumophila Length = 361

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 150/330 (45%), Gaps = 62/330 (18%)
Query: 289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 348
           ++ D  + F DV+L P  +  +SR  V+ T T      GK    +P+I+ANMDT+    M
Sbjct: 2   VMTDQAITFDDVLLVPSYNHHESRRVVETTSTDRL---GKLTLNLPVISANMDTITESNM 58
Query: 349 AKHLAKHGLFTTIHKYYTLEE-WKAFAVQNPDVIKHVADGGCTSPGDVAKAMG---AGAD 404
           A  +   G    +H++ T+EE  + F      V   V   GCT   ++ +A     AGAD
Sbjct: 59  ANFMHSKGAMGALHRFMTIEENIQEFKKCKGPVFVSV---GCTE-NELQRAEALRDAGAD 114
Query: 405 FVMLGGMFAGHDQSGGELTNIEYMFFP---LVGDMNSYLGG------------------- 442
           F  +    A     G  L ++  +      + G++ +Y G                    
Sbjct: 115 FFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGS 174
Query: 443 ----------------------------VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGH 474
                                       V DGG  + GD+ KA+  GADFVM+GGM AG 
Sbjct: 175 VCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKALAFGADFVMIGGMLAGS 234
Query: 475 DQSGGELIEKD-GKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQD 533
             + GE+ +KD G KVK + GM+S  A +   G + E++ AEG   +VP++ + +  + D
Sbjct: 235 APTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGVATEVPFKENPDGIIAD 294
Query: 534 ILGGLRSACTYVGASKLKELPRRATFIRCT 563
           I+GGLRS  TY GA  + EL R+  ++  T
Sbjct: 295 IIGGLRSGLTYAGADSISELQRKLNYVIVT 324

>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate Dehydrogenase From Legionella Pneumophila Length = 361

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 613 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           AEG   +VP++ + +  + DI+GGLRS  TY GA  + EL R+  ++  T
Sbjct: 275 AEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVT 324

>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis At 1.8 A Resolution Length = 336

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
            D++D+ L P +  + SRSE D T T      GK    +P++ ANM T+    +A +LA+
Sbjct: 14  FDYEDIQLIPAKCIVNSRSECDTTVTL-----GKHKFKLPVVPANMQTIIDERIATYLAE 68
Query: 79  HGLFTTIHKYYTLEEWKAFA--VQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYIC 136
           +  F  +H++   E+  +F   +Q+  +I   ++S G+   +   ++++ A     EYI 
Sbjct: 69  NNYFYIMHRFQP-EKRISFIRDMQSRGLI--ASISVGVKEDEYEFVQQLAAEHLTPEYIT 125
Query: 137 LDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 196
           +D+A+G++   ++ ++ I++  P+  +IAGNV T E V EL  +GAD  KVGIGPG VC 
Sbjct: 126 IDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCI 185
Query: 197 TRLK 200
           T++K
Sbjct: 186 TKIK 189

>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis At 1.8 A Resolution Length = 336

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 137/326 (42%), Gaps = 89/326 (27%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
            D++D+ L P +  + SRSE D T T      GK    +P++ ANM T+    +A +LA+
Sbjct: 14  FDYEDIQLIPAKCIVNSRSECDTTVTL-----GKHKFKLPVVPANMQTIIDERIATYLAE 68
Query: 355 HGLFTTIHKY-----------------------------YTLEEWKAFAVQNPDVI---- 381
           +  F  +H++                             Y   +  A     P+ I    
Sbjct: 69  NNYFYIMHRFQPEKRISFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDI 128
Query: 382 ----------------KHVAD-----GGCTSPGDVAKAMGAGADFVMLG---------GM 411
                           KH+ +     G   +P  V +   AGAD   +G          +
Sbjct: 129 AHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKI 188
Query: 412 FAGHDQSGGELTNIEY----MFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML 467
             G    G +L  + +       P++ D     GG+      + GDVAK++  GA  VM+
Sbjct: 189 KTGFGTGGWQLAALRWCAKAASKPIIAD-----GGI-----RTNGDVAKSIRFGATMVMI 238
Query: 468 GGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDV 527
           G +FAGH++S GE IEKDGK  K ++G +S            E +  EGK + V ++G +
Sbjct: 239 GSLFAGHEESPGETIEKDGKLYKEYFGSASEFQK-------GEKKNVEGKKMFVEHKGSL 291
Query: 528 NDTVQDILGGLRSACTYVGASKLKEL 553
            DT+ ++   L+S+ +Y G +KL  +
Sbjct: 292 EDTLIEMEQDLQSSISYAGGTKLDSI 317

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 120/274 (43%), Gaps = 38/274 (13%)
Query: 316 DITRTFTFRNSGKTYQGVPIIAANMDTVG-TFEMAKHLAKHGLFTTI------HKYYTLE 368
           DI       N+ +  +G  ++ A + T   T E  + L K G+   +      H    +E
Sbjct: 208 DIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIE 267
Query: 369 EWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG-------------GMFAGH 415
             +      PD+   V  G   +P      + AGAD V +G             G+    
Sbjct: 268 TLEMIKADYPDL--PVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ 325
Query: 416 DQSGGELTNIEYMF-FPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGH 474
             +  E + +   +  P++ D          GG    GD+ KA+ AGA+ VM+G +FAG 
Sbjct: 326 LTAVMECSEVARKYDVPIIAD----------GGIRYSGDIVKALAAGAESVMVGSIFAGT 375
Query: 475 DQSGGELIEKDGKKVKLFYGMSSTTAM-----DKHAGGVAEYRAAEGKTVQVPYRGDVND 529
           +++ GE I   G+K K + GM S  AM     D++          EG    VPY+G V D
Sbjct: 376 EEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIEGMVPYKGTVKD 435
Query: 530 TVQDILGGLRSACTYVGASKLKELPRRATFIRCT 563
            V  ++GGLRS   Y+GA  +KEL  +A F++ T
Sbjct: 436 VVHQLVGGLRSGMGYIGARTIKELQEKAVFVKIT 469

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 609 NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           N    EG    VPY+G V D V  ++GGLRS   Y+GA  +KEL  +A F++ T
Sbjct: 416 NKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKAVFVKIT 469

>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, Complexed With Imp And Mycophenolic Acid Length = 366

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
           L F DV+L P  ST+   +  D+ RT   +N       +P+++A+MDTV    +A  LA+
Sbjct: 14  LTFDDVLLVPAHSTVLPNT-ADL-RTRLTKN---IALNIPMVSASMDTVTEARLAIALAQ 68
Query: 79  HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE--IEYIC 136
            G    IHK  ++E+ +A  V    +   + V + + A    G +E + AL E  ++ + 
Sbjct: 69  EGGIGFIHKNMSIEQ-QAAQVHQVKISGGLRVGAAVGAAP--GNEERVKALVEAGVDVLL 125
Query: 137 LDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 196
           +D ++G+++  +  +R  R  YP   II GNV T E    LI +G   +KVGIGPGS+CT
Sbjct: 126 IDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICT 185
Query: 197 TRL 199
           TR+
Sbjct: 186 TRI 188

>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, Complexed With Imp And Mycophenolic Acid Length = 366

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 152/396 (38%), Gaps = 95/396 (23%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L F DV+L P  ST+   +  D+ RT   +N       +P+++A+MDTV    +A  LA+
Sbjct: 14  LTFDDVLLVPAHSTVLPNT-ADL-RTRLTKN---IALNIPMVSASMDTVTEARLAIALAQ 68
Query: 355 HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGC--TSPGD---VAKAMGAGADFVMLG 409
            G    IHK  ++E+ +A  V    +   +  G     +PG+   V   + AG D +++ 
Sbjct: 69  EGGIGFIHKNMSIEQ-QAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLID 127
Query: 410 GMFAGHDQSGGELTNIE-----YMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADF 464
              + H  S G L  I      Y    ++G                 G+VA A GA A  
Sbjct: 128 ---SSHGHSEGVLQRIRETRAAYPHLEIIG-----------------GNVATAEGARA-- 165
Query: 465 VMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST--------------TAMDKHAGGVAE 510
                           LIE     VK+  G  S               TA+   AG   E
Sbjct: 166 ----------------LIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANE 209
Query: 511 YRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA--SKLKELPRRATFIRCTAQLNN 568
           Y         + + GD++  +        ++C  VG+  +  +E P      +       
Sbjct: 210 YGIPVIADGGIRFSGDISKAI-----AAGASCVMVGSMFAGTEEAPGEVILYQG------ 258
Query: 569 VNDTVQDILGGLRSACTYVGASKLKELPRRAT--FIRCTAQLNNVAAEGKTVQVPYRGDV 626
                       RS   Y G   L  + + ++  + +     + +  EG   ++ Y+G +
Sbjct: 259 ------------RSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGRIAYKGHL 306
Query: 627 NDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
            + +   +GGLRS     G++ +++L  +A F+R +
Sbjct: 307 KEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRIS 342

>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By Inhibitor C64 Length = 361

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 120/266 (45%), Gaps = 70/266 (26%)
Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
           L F+D++L P  S +  R EV +    T   S K    +P+I++ MDTV    MA  +A+
Sbjct: 13  LTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVTEHLMAVGMAR 67
Query: 79  HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEI----LAALPEIEY 134
            G    IHK   +E       Q  +V+K V  S G+      G+ EI    L     ++ 
Sbjct: 68  LGGIGIIHKNMDMES------QVNEVLK-VKNSGGLRVGAAIGVNEIERAKLLVEAGVDV 120
Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           I LD A+G++   ++ +R ++E+  K  I                   DVI         
Sbjct: 121 IVLDSAHGHS---LNIIRTLKEIKSKMNI-------------------DVI--------- 149
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
                                   GNVVT E  +ELI +GAD IKVGIGPGS+CTTR+  
Sbjct: 150 -----------------------VGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVA 186
Query: 255 GVGYPQFSAVLECADAAHGLGGHIIS 280
           GVG PQ +A+ +C+  A   G  II+
Sbjct: 187 GVGVPQITAIEKCSSVASKFGIPIIA 212

>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By Inhibitor C64 Length = 361

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 154/376 (40%), Gaps = 58/376 (15%)
Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L F+D++L P  S +  R EV +    T   S K    +P+I++ MDTV    MA  +A+
Sbjct: 13  LTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVTEHLMAVGMAR 67
Query: 355 HGLFTTIHKYYTLEEW--KAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF 412
            G    IHK   +E    +   V+N   ++  A  G          + AG D ++L    
Sbjct: 68  LGGIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVL---- 123
Query: 413 AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFA 472
              D + G   NI      +   MN      +D                   V++G +  
Sbjct: 124 ---DSAHGHSLNIIRTLKEIKSKMN------ID-------------------VIVGNVVT 155
Query: 473 GHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAG-GVAEYRAAEGKTVQVPYRGDVNDTV 531
             +++  ELIE     +K+  G  S       AG GV +  A E K   V  +  +   +
Sbjct: 156 --EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIE-KCSSVASKFGI-PII 211
Query: 532 QDILGGLRSA-----CTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTY 586
            D  GG+R +        VGAS +      A       +   + DTV     G+ S    
Sbjct: 212 AD--GGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGS---- 265
Query: 587 VGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA 646
           VGA K     R   + +     N +  EG   +V Y+G++   V  ++GGLRS   Y+G+
Sbjct: 266 VGAMKSGSGDR---YFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGS 322
Query: 647 SKLKELPRRATFIRCT 662
           + ++EL ++++++  T
Sbjct: 323 ASIEELWKKSSYVEIT 338

>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant Length = 388

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 28/203 (13%)
Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
           L F DV+L P  ST+     +  T     R +      +P+++A+MDTV    +A  LA+
Sbjct: 14  LTFDDVLLVPAHSTV-----LPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQ 68
Query: 79  HGLFTTIHKYYTLEEWKAFAVQNPDVIK-------HVAVSSGISAKD------------- 118
            G    IHK  ++E+ +A  V    + +       H A S   + KD             
Sbjct: 69  EGGIGFIHKNMSIEQ-QAAQVHQVKIFESGGAKDFHKAESKPNACKDEQGRLRVGAAVGA 127
Query: 119 LAGLKEILAALPE--IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEE 176
             G +E + AL E  ++ + +D ++G+++  +  +R  R  YP   II GNV T E    
Sbjct: 128 APGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARA 187
Query: 177 LILSGADVIKVGIGPGSVCTTRL 199
           LI +G   +KVGIGPGS+CTTR+
Sbjct: 188 LIEAGVSAVKVGIGPGSICTTRI 210

>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant Length = 388

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 7/128 (5%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GD++KA+ AGA  VM+G MFAG +++ GE+I   G+  K + GM S  AM 
Sbjct: 237 IADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMS 296
Query: 503 K-------HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
           K            A+    EG   ++ Y+G + + +   +GGLRS     G++ +++L  
Sbjct: 297 KGSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT 356
Query: 556 RATFIRCT 563
           +A F+R +
Sbjct: 357 KAQFVRIS 364

>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi Inosine 5'- Monphosphate Dehydrogenase In Complex With A Sulfate Ion Length = 404

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 130/279 (46%), Gaps = 25/279 (8%)
Query: 9   MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
           M  KI  +  L F DV L P++S++   SEV +    T   S      +P +++ MDTV 
Sbjct: 1   MPNKITKE-ALTFDDVSLIPRKSSVLP-SEVSLKTQLTKNIS----LNIPFLSSAMDTVT 54
Query: 69  TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAK-DLAGLK-EIL 126
             +MA  +AK G    IHK  ++E  +    +  + +K       I+   D    K EI 
Sbjct: 55  ESQMAIAIAKEGGIGIIHKNMSIEAQR----KEIEKVKTYKFQKTINTNGDTNEQKPEIF 110
Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
            A   +E         + + F +  + +         ++ ++ T E VEEL+ +  D++ 
Sbjct: 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILV 170
Query: 187 VGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG 241
           +    G          ++K K  +  LI        AGN+VT E   +LI  GAD +KVG
Sbjct: 171 IDSAHGHSTRIIELIKKIKTKYPNLDLI--------AGNIVTKEAALDLISVGADCLKVG 222
Query: 242 IGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
           IGPGS+CTTR+  GVG PQ +A+ +  +A +     II+
Sbjct: 223 IGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIA 261

>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi Inosine 5'- Monphosphate Dehydrogenase In Complex With A Sulfate Ion Length = 404

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Query: 437 NSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMS 496
           N+ +  + DGG    GDV KA+ AGAD VM+G +FAG  +S  E I  +GKK K + GM 
Sbjct: 254 NTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMG 313
Query: 497 STTAMDKHAGGVAEY----------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVG 546
           S +AM +  G  + Y             EG    VPY G + D +  + GGL S   Y+G
Sbjct: 314 SISAMKR--GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLG 371
Query: 547 ASKLKELPRRATFIRCT 563
           A+ + +L   + F++ +
Sbjct: 372 AATISDLKINSKFVKIS 388

>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 123/266 (46%), Gaps = 28/266 (10%)
Query: 19  LDFKDVMLRPKRSTLKSRS---EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKH 75
           L F+D++L P  S +  R    E  +T+  + +        +P+I++ MDTV    MA  
Sbjct: 10  LTFEDILLVPNYSEVLPREVSLETKLTKNVSLK--------IPLISSAMDTVTEHLMAVG 61
Query: 76  LAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYI 135
           +A+ G    IHK   +E      ++  + I ++  +     ++L   KE           
Sbjct: 62  MARLGGIGIIHKNMDMESQVNEVLKVKNWISNLEKNESTPDQNLD--KESTDGKDTKSNN 119
Query: 136 CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG-SV 194
            +D    Y+   +D   R+R      V  A  V   E  + L+ +G DVI +    G S+
Sbjct: 120 NIDA---YSNENLDNKGRLR------VGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSL 170
Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
              R   +      I         GNVVT E  +ELI +GAD IKVGIGPGS+CTTR+  
Sbjct: 171 NIIRTLKEIKSKMNIDVI-----VGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVA 225
Query: 255 GVGYPQFSAVLECADAAHGLGGHIIS 280
           GVG PQ +A+ +C+  A   G  II+
Sbjct: 226 GVGVPQITAIEKCSSVASKFGIPIIA 251

>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY-GMSSTTAM 501
           + DGG    GD+ KA+  GA  VM+G + AG ++S GE  E  G  V  +Y GM S  AM
Sbjct: 250 IADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEK-ELIGDTVYKYYRGMGSVGAM 308
Query: 502 DKHAGG--VAEYR-----AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
              +G     E R       EG   +V Y+G++   V  ++GGLRS   Y+G++ ++EL 
Sbjct: 309 KSGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELW 368
Query: 555 RRATFIRCT 563
           ++++++  T
Sbjct: 369 KKSSYVEIT 377

>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 609 NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           N +  EG   +V Y+G++   V  ++GGLRS   Y+G++ ++EL ++++++  T
Sbjct: 324 NKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEIT 377

>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GD+ KA+ AGA  VMLG MFAG  +S GE     G++ K++ GM S  AM+
Sbjct: 363 IADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAME 422
Query: 503 KHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
           K  G    Y          EG   +VPY+G + DTV  ++GGLR+   Y GA  L+ L  
Sbjct: 423 K--GSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRE 480
Query: 556 RATFIRCT 563
            A FIR +
Sbjct: 481 NAQFIRMS 488

>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           EG   +VPY+G + DTV  ++GGLR+   Y GA  L+ L   A FIR +
Sbjct: 440 EGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMS 488

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GD+ KA+ AGAD VMLG + AG  ++ G+ +  +G+K K + GM S  AM 
Sbjct: 332 IADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMM 391
Query: 503 K------HAGGVAEYR--AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
           K      + GG  + R    EG    VPYRG V++ +  ++GGL++   YVGA  ++EL 
Sbjct: 392 KGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELK 451
Query: 555 RRATFIRCT 563
            +  F+  T
Sbjct: 452 EKGEFVIIT 460

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           EG    VPYRG V++ +  ++GGL++   YVGA  ++EL  +  F+  T
Sbjct: 412 EGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIIT 460

>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'- Monophosphate Dehydrogenase Length = 490

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAM- 501
           + DGG    GD+AKAM AGA  VM+G MFAG +++ GE+    G+  K + GM S  AM 
Sbjct: 336 IADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMS 395
Query: 502 -----------DKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL 550
                      D  AG  AE    EG   +VPY+G ++  V  ++GGLR+A  Y G++ +
Sbjct: 396 GSQGSSDRYFQDASAG--AEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADI 453
Query: 551 KELPRRATFIRCT 563
           +++  +  F+R T
Sbjct: 454 QQMRTQPQFVRIT 466

>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'- Monophosphate Dehydrogenase Length = 490

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 601 FIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 660
           F   +A    +  EG   +VPY+G ++  V  ++GGLR+A  Y G++ ++++  +  F+R
Sbjct: 405 FQDASAGAEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQPQFVR 464
Query: 661 CT 662
            T
Sbjct: 465 IT 466

>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-monophosphate Dehydrogenase Length = 510

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAM- 501
           + DGG    GD+AKAM AGA  VM+G MFAG +++ GE+    G+  K + GM S  AM 
Sbjct: 356 IADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMS 415
Query: 502 -----------DKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL 550
                      D  AG  AE    EG   +VPY+G ++  V  ++GGLR+A  Y G++ +
Sbjct: 416 GSQGSSDRYFQDASAG--AEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADI 473
Query: 551 KELPRRATFIRCT 563
           +++  +  F+R T
Sbjct: 474 QQMRTQPQFVRIT 486

>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-monophosphate Dehydrogenase Length = 510

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 601 FIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 660
           F   +A    +  EG   +VPY+G ++  V  ++GGLR+A  Y G++ ++++  +  F+R
Sbjct: 425 FQDASAGAEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQPQFVR 484
Query: 661 CT 662
            T
Sbjct: 485 IT 486

>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine Monophosphate Dehydrogenase In The Complex With Imp Length = 511

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 55/87 (63%)
Query: 132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191
           ++ I LD A+G++Q  +D V+ +R  YP   IIAGNV T E  + LI +GA+V+KVGIGP
Sbjct: 269 VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGP 328
Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQA 218
           GS+CTTR+        L   Y C  +A
Sbjct: 329 GSICTTRVVAGVGVPQLTAVYDCATEA 355

>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine Monophosphate Dehydrogenase In The Complex With Imp Length = 511

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GD  KA+ AGA  V LG  FAG  +S GE     G++ K++ G  S  A +
Sbjct: 363 IADGGIKYSGDXVKALAAGAHVVXLGSXFAGVAESPGETEIYQGRQFKVYRGXGSVGAXE 422
Query: 503 KHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
           K  G    Y          EG   +VPY+G + DTV  ++GGLR+   Y GA  L+ L  
Sbjct: 423 K--GSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGXGYCGAQDLEFLRE 480
Query: 556 RATFIRCT 563
            A FIR +
Sbjct: 481 NAQFIRXS 488

>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine Monophosphate Dehydrogenase In The Complex With Imp Length = 511

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           EG   +VPY+G + DTV  ++GGLR+   Y GA  L+ L   A FIR +
Sbjct: 440 EGIEGRVPYKGPLADTVHQLVGGLRAGXGYCGAQDLEFLRENAQFIRXS 488

>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GD+ KA+ AG + V LG  FAG D++ GE     G+K K + G  S  A  
Sbjct: 340 IADGGIKYSGDIVKALAAGGNAVXLGSXFAGTDEAPGETEIYQGRKYKTYRGXGSIAAXK 399
Query: 503 KHA------GGVAEYR--AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
           K +      G V E      EG   +V Y+G  +D V   LGG+RS   YVGA  ++EL 
Sbjct: 400 KGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQXLGGIRSGXGYVGAGDIQELH 459
Query: 555 RRATFIRCT 563
             A F+  +
Sbjct: 460 ENAQFVEXS 468

>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 607 QLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 662
           + N +  EG   +V Y+G  +D V   LGG+RS   YVGA  ++EL   A F+  +
Sbjct: 413 EANKLVPEGIEGRVAYKGAASDIVFQXLGGIRSGXGYVGAGDIQELHENAQFVEXS 468

>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase In Complex With Mycophenolic Acid Length = 514

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + G +AKA+  GA  VM+G + A   ++ GE    DG ++K + GM S  AMD
Sbjct: 362 IADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMD 421
Query: 503 KHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
           KH      Y       + A+G +  V  +G ++  V  ++ G++ +C  +GA  L ++  
Sbjct: 422 KHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV-- 479
Query: 556 RATFIRCTAQLNNVNDTVQDILGGLRSACTY 586
           RA       +      + Q + GG+ S  +Y
Sbjct: 480 RAMMYSGELKFEKRTSSAQ-VEGGVHSLHSY 509

>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate Dehydrogenase With 6-Cl-Imp And Selenazole Adenine Dinucleotide Length = 514

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + G +AKA+  GA  VM+G + A   ++ GE    DG ++K + GM S  AMD
Sbjct: 362 IADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMD 421
Query: 503 KHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
           KH      Y       + A+G +  V  +G ++  V  ++ G++ +C  +GA  L ++  
Sbjct: 422 KHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV-- 479
Query: 556 RATFIRCTAQLNNVNDTVQDILGGLRSACTY 586
           RA       +      + Q + GG+ S  +Y
Sbjct: 480 RAMMYSGELKFEKRTSSAQ-VEGGVHSLHSY 509

>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae Complexed With Imp And Mycophenolic Acid Length = 496

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG    GD++KA+ AGA  V +G  FAG +++ GE+I   G+  K + G  S  A  
Sbjct: 338 IADGGIRFSGDISKAIAAGASCVXVGSXFAGTEEAPGEVILYQGRSYKAYRGXGSLGAXS 397
Query: 503 K-------HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
           K            A+    EG   ++ Y+G + + +    GGLRS     G++ +++L  
Sbjct: 398 KGSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQXGGLRSCXGLTGSATVEDLRT 457
Query: 556 RATFIRCT 563
           +A F+R +
Sbjct: 458 KAQFVRIS 465

>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 109/291 (37%), Gaps = 73/291 (25%)
Query: 58  PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFA-----VQNPDVIKHVAVSS 112
           P +++ MDTV    MA  LA HG    IH   + EE  A        +N  +   + +  
Sbjct: 94  PFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRVKKYENGFITDPLCLGP 153
Query: 113 GISAKDLAGLKEILA--ALP-----EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIA 165
             +  D+  +K       +P     E +   L +  G    F D    I+ +    V+  
Sbjct: 154 DATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVTG 213
Query: 166 GNVVTGEMVEELI--------------------LSGADVIK------------------- 186
            + +T E    L+                    ++ +D++K                   
Sbjct: 214 SSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCG 273
Query: 187 --VGIGPGSVCTTRL------------KNKTSDFFLIQFYSCIPQ--------AGNVVTG 224
             +G  PG     +L             ++ +  + I+F   I Q        AGNVVT 
Sbjct: 274 AAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTR 333
Query: 225 EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG 275
           E   +LI +GAD +++G+G GS+C T+    VG PQ +AV   A+ A   G
Sbjct: 334 EQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFG 384

>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + G +AKA+  GA  VM+GG+ AG  +S GE    +GK+VK++ GM S  AM+
Sbjct: 388 IADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAME 447
Query: 503 KHAGGVAE----------------------YRAAEGKTVQVPYRGDVNDTVQDILGGLRS 540
               G A                        + A+G +  V  +G +N  V  +  GL+ 
Sbjct: 448 HTQRGSASGKRSILGLDNAATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQH 507
Query: 541 ACTYVGASKLKEL 553
           +        + EL
Sbjct: 508 SLQDAAIKSVSEL 520

>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 109/291 (37%), Gaps = 73/291 (25%)
Query: 58  PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFA-----VQNPDVIKHVAVSS 112
           P +++ MDTV    MA  LA HG    IH   + EE  A        +N  +   + +  
Sbjct: 94  PFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRVKKYENGFITDPLCLGP 153
Query: 113 GISAKDLAGLKEILA--ALP-----EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIA 165
             +  D+  +K       +P     E +   L +  G    F D    I+ +    V+  
Sbjct: 154 DATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVTG 213
Query: 166 GNVVTGEMVEELI--------------------LSGADVIK------------------- 186
            + +T E    L+                    ++ +D++K                   
Sbjct: 214 SSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCG 273
Query: 187 --VGIGPGSVCTTRL------------KNKTSDFFLIQFYSCIPQ--------AGNVVTG 224
             +G  PG     +L             ++ +  + I+F   I Q        AGNVVT 
Sbjct: 274 AAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTR 333
Query: 225 EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLG 275
           E   +LI +GAD +++G+G GS+C T+    VG PQ +AV   A+ A   G
Sbjct: 334 EQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFG 384

>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + G +AKA+  GA  VM+GG+ AG  +S GE    +GK+VK++ GM S  AM+
Sbjct: 388 IADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAME 447
Query: 503 KHAGGVAE----------------------YRAAEGKTVQVPYRGDVNDTVQDILGGLRS 540
               G A                        + A+G +  V  +G +N  V  +  GL+ 
Sbjct: 448 HTQRGSASGKRSILGLDNAATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQH 507
Query: 541 ACTYVGASKLKEL 553
           +    G   + EL
Sbjct: 508 SLQDAGIKSVSEL 520

>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate Dehydrogenase With 6-Cl-Imp Length = 514

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 443 VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMD 502
           + DGG  + G V KA+  GA  VM+G + A   ++ GE    DG ++K + GM S  AM+
Sbjct: 362 IADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAME 421
Query: 503 KHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL 553
           K +     Y       + A+G +  +  +G +   V  ++ G++  C  +GA  L  L
Sbjct: 422 KSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVL 479

>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp Bound Length = 503

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 439 YLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
           Y+    DGG      +  A+  GADF+MLG  FA  ++S    +  +G  +K ++G  S+
Sbjct: 352 YIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSS 411
Query: 499 TAMDKHA---GGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            A +      GG  +    EG    VPY G + D V+  L  ++S     GA  + +L  
Sbjct: 412 RARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 471
Query: 556 RA 557
           +A
Sbjct: 472 KA 473

>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp And Moa Bound Length = 503

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 439 YLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
           Y+    DGG      +  A+  GADF+MLG  FA  ++S    +  +G  +K ++G  S+
Sbjct: 352 YIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSS 411
Query: 499 TAMDKHA---GGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            A +      GG  +    EG    VPY G + D V+  L  ++S     GA  + +L  
Sbjct: 412 RARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 471
Query: 556 RA 557
           +A
Sbjct: 472 KA 473

>pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp Dehydrogenase Catalytic Domain And A Transition State Analogue Mzp Length = 376

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 439 YLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
           Y+    DGG      +  A+  GADF+MLG  FA  ++S    +  +G  +K ++G  S+
Sbjct: 225 YIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSS 284
Query: 499 TAMDKHA---GGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            A +      GG  +    EG    VPY G + D V+  L  ++S     GA  + +L  
Sbjct: 285 RARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 344
Query: 556 RA 557
           +A
Sbjct: 345 KA 346

>pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas Foetus Inosine-5'-Monophosphate Dehydrogenase: Structural Characterization Of Nad+ Site In Microbial Enzyme Length = 376

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 439 YLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST 498
           Y+    DGG      +  A+  GADF+MLG  FA  ++S    +  +G  +K ++G  S+
Sbjct: 225 YIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSS 284
Query: 499 TAMDKHA---GGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            A +      GG  +    EG    VPY G + D V+  L  ++S     GA  + +L  
Sbjct: 285 RARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS 344
Query: 556 RA 557
           +A
Sbjct: 345 KA 346

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	671
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	1e-105
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	2e-67
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	5e-39
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	3e-21
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	5e-18
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	2e-82
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	5e-51
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	4e-29
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	3e-16
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	7e-16
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	6e-73
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	2e-58
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	2e-23
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	5e-18
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	2e-16
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	1e-30
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	6e-27
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	5e-08
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	2e-28
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	2e-27
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	4e-08
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	2e-27
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	1e-25
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	7e-09
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	6e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	7e-27
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-21
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-06
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	3e-04
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	3e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	1e-26
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-22
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	8e-08
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	6e-06
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	6e-06
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	3e-26
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	7e-26
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	6e-09
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	6e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-25
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	3e-23
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	5e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	6e-08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-25
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	4e-21
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	6e-09
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	5e-08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	5e-04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	5e-04
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-25
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-23
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	5e-09
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	6e-08
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-04
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	7e-04
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-25
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	3e-23
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	5e-09
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	5e-08
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	3e-04
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	3e-04
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	4e-25
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-22
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	5e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	9e-08
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	2e-24
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	2e-22
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	2e-06
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	2e-05
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	2e-04
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	2e-05
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	8e-05
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	2e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-04

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351

 Score =  323 bits (829), Expect = e-105
 Identities = 152/268 (56%), Positives = 185/268 (69%), Gaps = 53/268 (19%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           ++    LDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 14  LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 73

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           AK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A SSG  + D   L++IL A+P++
Sbjct: 74  AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 133

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           +YICLDVANGY++ FV+FV+ +R+ +P+H I+AGNVVTGEMVEELILSGAD+IKVGIGPG
Sbjct: 134 KYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 193

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SV                                                     CTTR 
Sbjct: 194 SV-----------------------------------------------------CTTRK 200

Query: 253 KTGVGYPQFSAVLECADAAHGLGGHIIS 280
           KTGVGYPQ SAV+ECADAAHGL GHIIS
Sbjct: 201 KTGVGYPQLSAVMECADAAHGLKGHIIS 228

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351

 Score =  223 bits (571), Expect = 2e-67
 Identities = 95/123 (77%), Positives = 108/123 (87%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGELIE+DGKK KLFYGMSS  AM K+
Sbjct: 229 DGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKY 288

Query: 505 AGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
           AGGVAEYRA+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+KLKEL RR TFIR T 
Sbjct: 289 AGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQ 348

Query: 565 QLN 567
           Q+N
Sbjct: 349 QVN 351

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351

 Score =  146 bits (371), Expect = 5e-39
 Identities = 69/123 (56%), Positives = 87/123 (70%), Gaps = 5/123 (4%)

Query: 289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 348
           ++    LDFKDV+LRPKRSTLKSRSEVD+TR+F+FRNS +TY GVPIIAANMDTVGTFEM
Sbjct: 14  LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEM 73

Query: 349 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKA-----MGAGA 403
           AK L K  LFT +HK+Y+L +W+ FA QNPD ++H+A    T   D  +           
Sbjct: 74  AKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQV 133

Query: 404 DFV 406
            ++
Sbjct: 134 KYI 136

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351

 Score = 94.6 bits (236), Expect = 3e-21
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLN 666
           A+EGKTV+VP++GDV  T++DILGG+RS CTYVGA+KLKEL RR TFIR T Q+N
Sbjct: 297 ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVN 351

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351

 Score = 85.0 bits (211), Expect = 5e-18
 Identities = 38/68 (55%), Positives = 44/68 (64%), Gaps = 6/68 (8%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE---YMFF---PLVGDMN 437
           ++DGGC+ PGDVAKA GAGADFVMLGGM AGH +SGGEL   +   Y  F        M 
Sbjct: 227 ISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMK 286

Query: 438 SYLGGVVD 445
            Y GGV +
Sbjct: 287 KYAGGVAE 294

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336

 Score =  262 bits (673), Expect = 2e-82
 Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 65/276 (23%)

Query: 7   TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 66
           +      +     D++D+ L P +  + SRSE D T T            +P++ ANM T
Sbjct: 3   SHHHHHHM-GNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFK-----LPVVPANMQT 56

Query: 67  VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEIL 126
           +    +A +LA++  F  +H++   E+  +F           ++S G+   +   ++++ 
Sbjct: 57  IIDERIATYLAENNYFYIMHRFQP-EKRISFIRDMQSRGLIASISVGVKEDEYEFVQQLA 115

Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
           A     EYI +D+A+G++   ++ ++ I++  P+  +IAGNV T E V EL  +GAD  K
Sbjct: 116 AEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATK 175

Query: 187 VGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246
           VGIGPG V                                                    
Sbjct: 176 VGIGPGKV---------------------------------------------------- 183

Query: 247 VCTTRLKTGVGYP--QFSAVLECADAAHGLGGHIIS 280
            C T++KTG G    Q +A+  CA AA      II+
Sbjct: 184 -CITKIKTGFGTGGWQLAALRWCAKAA---SKPIIA 215

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336

 Score =  179 bits (456), Expect = 5e-51
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 8/121 (6%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG  + GDVAK++  GA  VM+G +FAGH++S GE IEKDGK  K ++G +S       
Sbjct: 216 DGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQK--- 272

Query: 505 AGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
                E +  EGK + V ++G + DT+ ++   L+S+ +Y G +KL  + R   ++    
Sbjct: 273 ----GEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSI-RTVDYVVVKN 327

Query: 565 Q 565
            
Sbjct: 328 S 328

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336

 Score =  117 bits (296), Expect = 4e-29
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 283 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 342
           +      +     D++D+ L P +  + SRSE D T T            +P++ ANM T
Sbjct: 3   SHHHHHHM-GNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFK-----LPVVPANMQT 56

Query: 343 VGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVA 385
           +    +A +LA++  F  +H++   E+  +F           +
Sbjct: 57  IIDERIATYLAENNYFYIMHRFQP-EKRISFIRDMQSRGLIAS 98

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG  + GDVAK++  GA  VM+G +FAGH++S GE 
Sbjct: 214 IADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGET 252

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 605 TAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ 664
             +      EGK + V ++G + DT+ ++   L+S+ +Y G +KL  + R   ++     
Sbjct: 270 FQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSI-RTVDYVVVKNS 328

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361

 Score =  238 bits (610), Expect = 6e-73
 Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 64/267 (23%)

Query: 13  IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 72
           ++ D  + F DV+L P  +  +SR  V+ T T            +P+I+ANMDT+    M
Sbjct: 2   VMTDQAITFDDVLLVPSYNHHESRRVVETTSTDRLGKL---TLNLPVISANMDTITESNM 58

Query: 73  AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEI 132
           A  +   G    +H++ T+EE              V VS G +  +L   + +  A    
Sbjct: 59  ANFMHSKGAMGALHRFMTIEENIQEF---KKCKGPVFVSVGCTENELQRAEALRDA--GA 113

Query: 133 EYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG 192
           ++ C+DVA+ + +     ++ +R++     I+AGNV T    + L   GAD+IK GIG G
Sbjct: 114 DFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGG 173

Query: 193 SVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL 252
           SV                                                     C+TR+
Sbjct: 174 SV-----------------------------------------------------CSTRI 180

Query: 253 KTGVGYPQFSAVLECADAAHGL---GG 276
           KTG G P  + + +C+ A   +   GG
Sbjct: 181 KTGFGVPMLTCIQDCSRADRSIVADGG 207

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361

 Score =  199 bits (509), Expect = 2e-58
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 1/121 (0%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEK-DGKKVKLFYGMSSTTAMDK 503
           DGG  + GD+ KA+  GADFVM+GGM AG   + GE+ +K DG KVK + GM+S  A + 
Sbjct: 205 DGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEA 264

Query: 504 HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT 563
             G + E++ AEG   +VP++ + +  + DI+GGLRS  TY GA  + EL R+  ++  T
Sbjct: 265 FLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVT 324

Query: 564 A 564
            
Sbjct: 325 Q 325

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361

 Score =  101 bits (254), Expect = 2e-23
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEM 348
           ++ D  + F DV+L P  +  +SR  V+ T T            +P+I+ANMDT+    M
Sbjct: 2   VMTDQAITFDDVLLVPSYNHHESRRVVETTSTDRLGKL---TLNLPVISANMDTITESNM 58

Query: 349 AKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKA---MGAGADF 405
           A  +   G    +H++ T+EE              V      +  ++ +A     AGADF
Sbjct: 59  ANFMHSKGAMGALHRFMTIEENIQEF---KKCKGPVFVSVGCTENELQRAEALRDAGADF 115

Query: 406 VML 408
             +
Sbjct: 116 FCV 118

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361

 Score = 85.4 bits (212), Expect = 5e-18
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 612 AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
            AEG   +VP++ + +  + DI+GGLRS  TY GA  + EL R+  ++  T 
Sbjct: 274 TAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVTQ 325

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEY 427
           VADGG  + GD+ KA+  GADFVM+GGM AG   + GE+   + 
Sbjct: 203 VADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEV--FQK 244

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366

 Score =  123 bits (310), Expect = 1e-30
 Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 70/274 (25%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           +I  +  L F DV+L P  ST+   +  D+    T   +      +P+++A+MDTV    
Sbjct: 8   RIAKEA-LTFDDVLLVPAHSTV-LPNTADLRTRLTKNIALN----IPMVSASMDTVTEAR 61

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH-----VAVSSGISAKDLAGLKEIL 126
           +A  LA+ G    IHK  ++E+           +K      V  + G +  +   +K ++
Sbjct: 62  LAIALAQEGGIGFIHKNMSIEQ----QAAQVHQVKISGGLRVGAAVGAAPGNEERVKALV 117

Query: 127 AALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIK 186
            A   ++ + +D ++G+++  +  +R  R  YP   II GNV T E    LI +G   +K
Sbjct: 118 EA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVK 175

Query: 187 VGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS 246
           VGIGPGS+CTTR                      +VT                       
Sbjct: 176 VGIGPGSICTTR----------------------IVT----------------------- 190

Query: 247 VCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
                   GVG PQ +A+ + A  A+  G  +I+
Sbjct: 191 --------GVGVPQITAIADAAGVANEYGIPVIA 216

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366

 Score =  111 bits (281), Expect = 6e-27
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 11/129 (8%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD++KA+ AGA  VM+G MFAG +++ GE+I   G+  K + GM S  AM K 
Sbjct: 217 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSK- 275

Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            G    Y     A  K V      ++ Y+G + + +   +GGLRS     G++ +++L  
Sbjct: 276 -GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT 334

Query: 556 RATFIRCTA 564
           +A F+R + 
Sbjct: 335 KAQFVRISG 343

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   ++ Y+G + + +   +GGLRS     G++ +++L  +A F+R + 
Sbjct: 294 EGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISG 343

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361

 Score =  116 bits (293), Expect = 2e-28
 Identities = 81/277 (29%), Positives = 119/277 (42%), Gaps = 73/277 (26%)

Query: 9   MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
           M  K I    L F+D++L P  S +  R EV +    T   S K    +P+I++ MDTV 
Sbjct: 4   MGTKNIGKG-LTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVT 57

Query: 69  TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH-----VAVSSGISAKDLAGLK 123
              MA  +A+ G    IHK   +E      V     +K+     V  + G++  + A  K
Sbjct: 58  EHLMAVGMARLGGIGIIHKNMDMES----QVNEVLKVKNSGGLRVGAAIGVNEIERA--K 111

Query: 124 EILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGAD 183
            ++ A   ++ I LD A+G++   +  ++ I+                           D
Sbjct: 112 LLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMN----------------------ID 147

Query: 184 VIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIG 243
           VI                                 GNVVT E  +ELI +GAD IKVGIG
Sbjct: 148 VI--------------------------------VGNVVTEEATKELIENGADGIKVGIG 175

Query: 244 PGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
           PGS+CTTR+  GVG PQ +A+ +C+  A   G  II+
Sbjct: 176 PGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 212

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361

 Score =  113 bits (284), Expect = 2e-27
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 11/129 (8%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+ KA+  GA  VM+G + AG ++S GE         K + GM S  AM   
Sbjct: 213 DGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS- 271

Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            G    Y   +  E K V      +V Y+G++   V  ++GGLRS   Y+G++ ++EL +
Sbjct: 272 -GSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWK 330

Query: 556 RATFIRCTA 564
           +++++  T 
Sbjct: 331 KSSYVEITT 339

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 16/50 (32%), Positives = 33/50 (66%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   +V Y+G++   V  ++GGLRS   Y+G++ ++EL ++++++  T 
Sbjct: 290 EGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEITT 339

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404

 Score =  114 bits (287), Expect = 2e-27
 Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 49/291 (16%)

Query: 9   MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
           M  KI  +  L F DV L P++S++    EV +    T +N       +P +++ MDTV 
Sbjct: 1   MPNKITKE-ALTFDDVSLIPRKSSVLPS-EVSLKTQLT-KN---ISLNIPFLSSAMDTVT 54

Query: 69  TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAA 128
             +MA  +AK G    IHK  ++E            I+ V         +  G       
Sbjct: 55  ESQMAIAIAKEGGIGIIHKNMSIEA-------QRKEIEKVKTYKFQKTINTNGDTNE-QK 106

Query: 129 LPEIEYICLDVANGYTQ---TFVDFVRRIREMYPK-------HVIIAGNVVTG----EMV 174
                      A  + +    + +   +    +P         + +   V       E V
Sbjct: 107 PEIFT------AKQHLEKSDAYKNAEHKED--FPNACKDLNNKLRVGAAVSIDIDTIERV 158

Query: 175 EELILSGADVIKVGIGPG---SVCTT--RLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEE 229
           EEL+ +  D++ +    G    +     ++K K  +  LI        AGN+VT E   +
Sbjct: 159 EELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLI--------AGNIVTKEAALD 210

Query: 230 LILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS 280
           LI  GAD +KVGIGPGS+CTTR+  GVG PQ +A+ +  +A +     II+
Sbjct: 211 LISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIA 261

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404

 Score =  109 bits (274), Expect = 1e-25
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 12/130 (9%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GDV KA+ AGAD VM+G +FAG  +S  E I  +GKK K + GM S +AM + 
Sbjct: 262 DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR- 320

Query: 505 AGGVAEY----RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
            G  + Y         K V       VPY G + D +  + GGL S   Y+GA+ + +L 
Sbjct: 321 -GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLK 379

Query: 555 RRATFIRCTA 564
             + F++ + 
Sbjct: 380 INSKFVKISH 389

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GDV KA+ AGAD VM+G +FAG  +S  E 
Sbjct: 260 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEE 298

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG    VPY G + D +  + GGL S   Y+GA+ + +L   + F++ + 
Sbjct: 340 EGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISH 389

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score =  113 bits (286), Expect = 7e-27
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG  + G V KA+  GA  VM+G + A   ++ GE    DG ++K + GM S  AM+K 
Sbjct: 364 DGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS 423

Query: 505 AGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL---- 553
           +     Y       + A+G +  +  +G +   V  ++ G++  C  +GA  L  L    
Sbjct: 424 SSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMM 483

Query: 554 -PRRATFIRCTA 564
                 F + T 
Sbjct: 484 YSGELKFEKRTM 495

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 97.6 bits (244), Expect = 2e-21
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 53/145 (36%)

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           I LD + G +   +  V  I++ YP   +I GNVVT    + LI +G D ++VG+G GS+
Sbjct: 271 IVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSI 330

Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
           C T+                       V                                
Sbjct: 331 CITQ----------------------EV-------------------------------M 337

Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
             G PQ +AV + A+ A   G  II
Sbjct: 338 ACGRPQGTAVYKVAEYARRFGVPII 362

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 36/120 (30%)

Query: 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL-------------------------FTTIH 362
           + Y  + +I  N   V T   AK+L   G+                          T ++
Sbjct: 292 QKYPHLQVIGGN---VVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVY 348

Query: 363 KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           K    E  + F V  P +I   ADGG  + G V KA+  GA  VM+G + A   ++ GE 
Sbjct: 349 KVA--EYARRFGV--P-II---ADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEY 400

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 613 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKEL-----PRRATFIRCTA 663
           A+G +  +  +G +   V  ++ G++  C  +GA  L  L          F + T 
Sbjct: 440 AQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTM 495

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
          L + D ++ P      +  EVD+T   T + + KT    P+I++ MDTV   +MA  +A 
Sbjct: 30 LTYNDFLILPGFIDFIAD-EVDLTSALTRKITLKT----PLISSPMDTVTEADMAIAMAL 84

Query: 79 HGLFTTIHKYYTLEE 93
           G    IH   T E 
Sbjct: 85 MGGIGFIHHNCTPEF 99

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
           L + D ++ P      +  EVD+T   T + + KT    P+I++ MDTV   +MA  +A 
Sbjct: 30  LTYNDFLILPGFIDFIAD-EVDLTSALTRKITLKT----PLISSPMDTVTEADMAIAMAL 84

Query: 355 HGLFTTIHKYYTLEE 369
            G    IH   T E 
Sbjct: 85  MGGIGFIHHNCTPEF 99

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score =  113 bits (285), Expect = 1e-26
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDK- 503
           DGG      +  A+  GADF+MLG  FA  ++S    +  +G  +K ++G  S+ A +  
Sbjct: 358 DGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQ 417

Query: 504 --HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIR 561
               GG  +    EG    VPY G + D V+  L  ++S     GA  + +L  +A    
Sbjct: 418 RYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITL 477

Query: 562 CTA 564
            ++
Sbjct: 478 VSS 480

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score =  100 bits (251), Expect = 2e-22
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 52/138 (37%)

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           +C+D ++G+++     +  IRE Y   V                     V          
Sbjct: 258 LCIDSSDGFSEWQKITIGWIREKYGDKV--------------------KVG--------- 288

Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
                                  AGN+V GE    L  +GAD IK+GIG GS+C TR + 
Sbjct: 289 -----------------------AGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQK 325

Query: 255 GVGYPQFSAVLECADAAH 272
           G+G  Q +AV++     +
Sbjct: 326 GIGRGQATAVIDVVAERN 343

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE 426
            +DGG      +  A+  GADF+MLG  FA  ++S      I 
Sbjct: 356 CSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTIN 398

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG    VPY G + D V+  L  ++S     GA  + +L  +A     ++
Sbjct: 431 EGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSS 480

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 9  MAQKIINDIKLDFKDVMLRPKRSTLKSR-SEVDITRTFTFRNSGKTYQ---GVPIIAANM 64
          MA K  N+    F + +L P  ST+    S V+++        G+  +    +P+++A M
Sbjct: 1  MA-KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIM 59

Query: 65 DTVGTFEMAKHLAKHGLFTTIHKYYTLEE 93
           +V   +MA  LA+ G  + I    ++E 
Sbjct: 60 QSVSGEKMAIALAREGGISFIFGSQSIES 88

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 285 MAQKIINDIKLDFKDVMLRPKRSTLKSR-SEVDITRTFTFRNSGKTYQ---GVPIIAANM 340
           MA K  N+    F + +L P  ST+    S V+++        G+  +    +P+++A M
Sbjct: 1   MA-KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIM 59

Query: 341 DTVGTFEMAKHLAKHGLFTTIHKYYTLEE 369
            +V   +MA  LA+ G  + I    ++E 
Sbjct: 60  QSVSGEKMAIALAREGGISFIFGSQSIES 88

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400

 Score =  110 bits (277), Expect = 3e-26
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 11/129 (8%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+ KA+  GA  VM+G + AG ++S GE         K + GM S  AM   
Sbjct: 252 DGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS- 310

Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            G    Y   +  E K V      +V Y+G++   V  ++GGLRS   Y+G++ ++EL +
Sbjct: 311 -GSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWK 369

Query: 556 RATFIRCTA 564
           +++++  T 
Sbjct: 370 KSSYVEITT 378

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400

 Score =  109 bits (275), Expect = 7e-26
 Identities = 80/286 (27%), Positives = 119/286 (41%), Gaps = 51/286 (17%)

Query: 9   MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
           M  K I    L F+D++L P  S +  R EV +    T   S K    +P+I++ MDTV 
Sbjct: 1   MGTKNIGK-GLTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLK----IPLISSAMDTVT 54

Query: 69  TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAA 128
              MA  +A+ G    IHK   +E                 V+  +  K+     E   +
Sbjct: 55  EHLMAVGMARLGGIGIIHKNMDMES---------------QVNEVLKVKNWISNLEKNES 99

Query: 129 LPEIEYICLDVANGYTQ--TFVDFVRRIREMYPK-------HVIIAGNVVTGEM--VEEL 177
            P+      ++    T               Y          + +   +   E+   + L
Sbjct: 100 TPDQ-----NLDKESTDGKDTKSNNNIDA--YSNENLDNKGRLRVGAAIGVNEIERAKLL 152

Query: 178 ILSGADVIKV----GIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS 233
           + +G DVI +    G     + T +      +  +I         GNVVT E  +ELI +
Sbjct: 153 VEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVI--------VGNVVTEEATKELIEN 204

Query: 234 GADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
           GAD IKVGIGPGS+CTTR+  GVG PQ +A+ +C+  A   G  II
Sbjct: 205 GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPII 250

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+ KA+  GA  VM+G + AG ++S GE 
Sbjct: 250 IADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEK 288

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 16/50 (32%), Positives = 33/50 (66%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   +V Y+G++   V  ++GGLRS   Y+G++ ++EL ++++++  T 
Sbjct: 329 EGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEITT 378

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score =  109 bits (276), Expect = 1e-25
 Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 9/127 (7%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+ KA+ AGA+ VM+G +FAG +++ GE I   G+K K + GM S  AM   
Sbjct: 346 DGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRS- 404

Query: 505 AGGVAEY-RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
            G    Y +  E K V       VPY+G V D V  ++GGLRS   Y+GA  +KEL  +A
Sbjct: 405 -GSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA 463

Query: 558 TFIRCTA 564
            F++ T 
Sbjct: 464 VFVKITP 470

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score =  102 bits (257), Expect = 3e-23
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 53/145 (36%)

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           I +D A+G+++  ++ +  I+  YP   ++AGNV T E  E LI +GAD +KVG+GPGS+
Sbjct: 253 IVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSI 312

Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
           CTTR                      VV                                
Sbjct: 313 CTTR----------------------VV-------------------------------A 319

Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
           GVG PQ +AV+EC++ A      II
Sbjct: 320 GVGVPQLTAVMECSEVARKYDVPII 344

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 58.3 bits (142), Expect = 5e-09
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+ KA+ AGA+ VM+G +FAG +++ GE 
Sbjct: 344 IADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGET 382

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 54.4 bits (132), Expect = 6e-08
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG    VPY+G V D V  ++GGLRS   Y+GA  +KEL  +A F++ T 
Sbjct: 421 EGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKAVFVKITP 470

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score =  109 bits (275), Expect = 2e-25
 Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 12/130 (9%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+ KA+ AGAD VMLG + AG  ++ G+ +  +G+K K + GM S  AM K 
Sbjct: 334 DGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMK- 392

Query: 505 AGGVAEY----RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
            GG   Y         K V       VPYRG V++ +  ++GGL++   YVGA  ++EL 
Sbjct: 393 -GGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELK 451

Query: 555 RRATFIRCTA 564
            +  F+  T 
Sbjct: 452 EKGEFVIITH 461

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 96.0 bits (240), Expect = 4e-21
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 170 TGEMVEELILSGADVIKV----GIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGE 225
             +   EL  +G DVI V         ++ + +   +  D   I         GN+   +
Sbjct: 229 DIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI--------VGNIANPK 280

Query: 226 MVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHII 279
            V++L    AD +KVGIGPGS+CTTR+  GVG PQ +AV   AD A   G ++I
Sbjct: 281 AVDDLT--FADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVI 332

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+ KA+ AGAD VMLG + AG  ++ G+ 
Sbjct: 332 IADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKE 370

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 54.8 bits (133), Expect = 5e-08
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG    VPYRG V++ +  ++GGL++   YVGA  ++EL  +  F+  T 
Sbjct: 412 EGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIITH 461

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ-GVPIIAANMDTVGTFEMAKHLA 77
            F DV+L P+ + ++ + +VD++   T        +  +PI++A MDTV  +EMA  +A
Sbjct: 15 YTFDDVLLIPQATEVEPK-DVDVSTRIT-----PNVKLNIPILSAAMDTVTEWEMAVAMA 68

Query: 78 KHGLFTTIHKYYTLEE 93
          + G    IH+   +EE
Sbjct: 69 REGGLGVIHRNMGIEE 84

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ-GVPIIAANMDTVGTFEMAKHLA 353
             F DV+L P+ + ++ + +VD++   T        +  +PI++A MDTV  +EMA  +A
Sbjct: 15  YTFDDVLLIPQATEVEPK-DVDVSTRIT-----PNVKLNIPILSAAMDTVTEWEMAVAMA 68

Query: 354 KHGLFTTIHKYYTLEE 369
           + G    IH+   +EE
Sbjct: 69  REGGLGVIHRNMGIEE 84

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score =  109 bits (275), Expect = 2e-25
 Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 9/127 (7%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+ KA+ AGA  VMLG MFAG  +S GE     G++ K++ GM S  AM+K 
Sbjct: 365 DGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEK- 423

Query: 505 AGGVAEY-RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA 557
            G    Y +    K V      +VPY+G + DTV  ++GGLR+   Y GA  L+ L   A
Sbjct: 424 -GSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENA 482

Query: 558 TFIRCTA 564
            FIR + 
Sbjct: 483 QFIRMSG 489

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score =  102 bits (257), Expect = 3e-23
 Identities = 50/145 (34%), Positives = 64/145 (44%), Gaps = 53/145 (36%)

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           I LD A+G++Q  +D V+ +R  YP   IIAGNV T E  + LI +GA+V+KVGIGPGS+
Sbjct: 272 IVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSI 331

Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
           CTTR                      VV                                
Sbjct: 332 CTTR----------------------VV-------------------------------A 338

Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
           GVG PQ +AV +CA  A   G  +I
Sbjct: 339 GVGVPQLTAVYDCATEARKHGIPVI 363

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 58.3 bits (142), Expect = 5e-09
 Identities = 22/39 (56%), Positives = 26/39 (66%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+ KA+ AGA  VMLG MFAG  +S GE 
Sbjct: 363 IADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGET 401

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 54.8 bits (133), Expect = 6e-08
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   +VPY+G + DTV  ++GGLR+   Y GA  L+ L   A FIR + 
Sbjct: 443 EG---RVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSG 489

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 266 ECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRN 325
             +    G              K + +  L F DV+L P +S +  R EV +    +  +
Sbjct: 7   HSSGVDLGTENLYFQSNAMWESKFVKE-GLTFDDVLLVPAKSDVLPR-EVSVKTVLS-ES 63

Query: 326 SGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE 369
                  +P+I+A MDTV   +MA  +A+ G    IHK  ++E+
Sbjct: 64  ---LQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQ 104

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 41.7 bits (99), Expect = 7e-04
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 7   TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 66
                K + +  L F DV+L P +S +  R EV +    +  +       +P+I+A MDT
Sbjct: 24  AMWESKFVKE-GLTFDDVLLVPAKSDVLPR-EVSVKTVLS-ES---LQLNIPLISAGMDT 77

Query: 67  VGTFEMAKHLAKHGLFTTIHKYYTLEE 93
           V   +MA  +A+ G    IHK  ++E+
Sbjct: 78  VTEADMAIAMARQGGLGIIHKNMSIEQ 104

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score =  109 bits (274), Expect = 2e-25
 Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 12/130 (9%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD+ KA+ AG + VMLG MFAG D++ GE     G+K K + GM S  AM K 
Sbjct: 342 DGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKK- 400

Query: 505 AGGVAEY----RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP 554
            G    Y         K V      +V Y+G  +D V  +LGG+RS   YVGA  ++EL 
Sbjct: 401 -GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELH 459

Query: 555 RRATFIRCTA 564
             A F+  + 
Sbjct: 460 ENAQFVEMSG 469

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score =  102 bits (258), Expect = 3e-23
 Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 53/145 (36%)

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           I +D A+G++   +  +  IR  +P   +IAGN+ T E    L  +G DV+KVGIGPGS+
Sbjct: 249 IVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSI 308

Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
           CTTR                      VV                                
Sbjct: 309 CTTR----------------------VV-------------------------------A 315

Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
           GVG PQ +A+ + A  A   G  II
Sbjct: 316 GVGVPQVTAIYDAAAVAREYGKTII 340

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 58.2 bits (142), Expect = 5e-09
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD+ KA+ AG + VMLG MFAG D++ GE 
Sbjct: 340 IADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGET 378

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 54.8 bits (133), Expect = 5e-08
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   +V Y+G  +D V  +LGG+RS   YVGA  ++EL   A F+  + 
Sbjct: 423 EG---RVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQFVEMSG 469

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 42.8 bits (102), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 7  TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 66
          +    K +      F DV+L P  S +    EVD+       N       +PII A MDT
Sbjct: 1  SNWDTKFLKK-GYTFDDVLLIPAESHVLPN-EVDLKTKLA-DN---LTLNIPIITAAMDT 54

Query: 67 VGTFEMAKHLAKHGLFTTIHKYYTLEE 93
          V   +MA  +A+ G    IHK  ++ E
Sbjct: 55 VTGSKMAIAIARAGGLGVIHKNMSITE 81

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 42.8 bits (102), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 283 TAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT 342
           +    K +      F DV+L P  S +    EVD+       N       +PII A MDT
Sbjct: 1   SNWDTKFLKK-GYTFDDVLLIPAESHVLPN-EVDLKTKLA-DN---LTLNIPIITAAMDT 54

Query: 343 VGTFEMAKHLAKHGLFTTIHKYYTLEE 369
           V   +MA  +A+ G    IHK  ++ E
Sbjct: 55  VTGSKMAIAIARAGGLGVIHKNMSITE 81

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score =  108 bits (272), Expect = 4e-25
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 11/129 (8%)

Query: 445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH 504
           DGG    GD++KA+ AGA  VM+G MFAG +++ GE+I   G+  K + GM S  AM K 
Sbjct: 340 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSK- 398

Query: 505 AGGVAEY---RAAEGKTV------QVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR 555
            G    Y     A  K V      ++ Y+G + + +   +GGLRS     G++ +++L  
Sbjct: 399 -GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT 457

Query: 556 RATFIRCTA 564
           +A F+R + 
Sbjct: 458 KAQFVRISG 466

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score =  101 bits (253), Expect = 1e-22
 Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 53/145 (36%)

Query: 135 ICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV 194
           + +D ++G+++  +  +R  R  YP   II GNV T E    LI +G   +KVGIGPGS+
Sbjct: 247 LLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSI 306

Query: 195 CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKT 254
           CTTR                      +V                               T
Sbjct: 307 CTTR----------------------IV-------------------------------T 313

Query: 255 GVGYPQFSAVLECADAAHGLGGHII 279
           GVG PQ +A+ + A  A+  G  +I
Sbjct: 314 GVGVPQITAIADAAGVANEYGIPVI 338

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 57.9 bits (141), Expect = 5e-09
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGEL 422
           +ADGG    GD++KA+ AGA  VM+G MFAG +++ GE+
Sbjct: 338 IADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEV 376

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.0 bits (131), Expect = 9e-08
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 614 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
           EG   ++ Y+G + + +   +GGLRS     G++ +++L  +A F+R + 
Sbjct: 420 EG---RIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISG 466

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393

 Score =  104 bits (262), Expect = 2e-24
 Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 47/277 (16%)

Query: 19  LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 78
               D+ +   R T  S+ +VD T              +P +    D + + E    + K
Sbjct: 36  YSLDDISVVSSRRTRSSK-DVDTTWHI-----DAYKFDLPFMNHPSDALASPEFVIEMGK 89

Query: 79  HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLD 138
            G    I+       W   A  +  + K +A              + L A P    +   
Sbjct: 90  QGGLGVINAEGL---WGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELL-- 144

Query: 139 VANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV---------GI 189
                     + + ++R+      +        E+   +I +GAD++ +           
Sbjct: 145 ---------SERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVN 195

Query: 190 GPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCT 249
             G     +    + D  +I        AG V        ++ +GA  I VG G     T
Sbjct: 196 TGGEALNLKEFIGSLDVPVI--------AGGVNDYTTALHMMRTGAVGIIVGGGE---NT 244

Query: 250 TRLKTGVGYPQFSAVLECADAAH-------GLGGHII 279
             L  G+     +A+ + A A         G   HII
Sbjct: 245 NSLALGMEVSMATAIADVAAARRDYLDETGGRYVHII 281

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393

 Score = 99.1 bits (247), Expect = 2e-22
 Identities = 52/295 (17%), Positives = 93/295 (31%), Gaps = 32/295 (10%)

Query: 287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTF 346
            + I  +   +++        TL+      +          +      I+A  +      
Sbjct: 109 DEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVR 168

Query: 347 EMAKHLAKHGL------FTTIHKYYTLEEWKAFAVQNP------DVIKHVADGGCTSPGD 394
           E+A  + K G        T I   +     +A  ++         VI      G  +   
Sbjct: 169 EIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVI-----AGGVNDYT 223

Query: 395 VAKA-MGAGADFVMLGGMFAGHDQSGG----ELTNI----EYMFFPLVGDMNSYLGGVVD 445
            A   M  GA  +++GG    +  + G      T I          L      Y+  + D
Sbjct: 224 TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIAD 283

Query: 446 GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHA 505
           G   + GDV KA+  GAD V+LG   A  +++ G+            +     T      
Sbjct: 284 GSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLD 343

Query: 506 GGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI 560
                  AA      +     +   V++  GGL+ A    G + LK   + +  +
Sbjct: 344 E------AAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHV 392

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 35/222 (15%), Positives = 64/222 (28%), Gaps = 32/222 (14%)

Query: 295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAK 354
               D+ +   R T  S+ +VD T              +P +    D + + E    + K
Sbjct: 36  YSLDDISVVSSRRTRSSK-DVDTTWHI-----DAYKFDLPFMNHPSDALASPEFVIEMGK 89

Query: 355 HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAG 414
            G    I+                 VI    +G   +     +                 
Sbjct: 90  QGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQ----------------- 132

Query: 415 HDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAM-GAGADFVMLGGMFAG 473
             +      + E +   +    +S     V     +  ++A  +  AGAD +++ G    
Sbjct: 133 --ELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGT-LI 189

Query: 474 HDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAE 515
             +      E     +K F G      +   AGGV +Y  A 
Sbjct: 190 SAEHVNTGGEAL--NLKEFIGSLDVPVI---AGGVNDYTTAL 226

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 620 VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI 659
           +     +   V++  GGL+ A    G + LK   + +  +
Sbjct: 353 LHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHV 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 45/328 (13%), Positives = 92/328 (28%), Gaps = 112/328 (34%)

Query: 131 EIEYICLDVANGYTQTFV---------DFVRRI---REMYPKHVIIAGNVVTG--EMVEE 176
           E +Y   D+ + +   FV         D  + I    E+   H+I++ + V+G   +   
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWT 70

Query: 177 LILSGADVIKVGIGPG-----SVCTTRLKNKTSDFFLI--QFYSCI------PQA---GN 220
           L+    ++++  +            + +K +     ++   +           Q     N
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 221 VVTGEMVEELI-----LSGADVIKV----GIGPGSVCTTRLKTGVGYPQFSAVLECADAA 271
           V   +   +L      L  A  + +    G G         KT V      A+  C    
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------KTWV------ALDVCLSYK 175

Query: 272 --HGLGGHI--ISF--------LTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITR 319
               +   I  ++         +  M QK++  I  ++           L+  S     R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 320 TFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD 379
               ++  K Y+   ++   +  V                        + W AF      
Sbjct: 236 RL-LKS--KPYENCLLV---LLNV---------------------QNAKAWNAF------ 262

Query: 380 VIKHVADGGC-----TSPGDVAKAMGAG 402
                 +  C     T    V   + A 
Sbjct: 263 ------NLSCKILLTTRFKQVTDFLSAA 284

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 42/197 (21%)

Query: 277 HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPII 336
            I++    +   +I  +K D+               S+V IT T              +I
Sbjct: 47  DILAIKETVDLPVIGIVKRDYDH-------------SDVFITATSK-EVDELIESQCEVI 92

Query: 337 AANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVA 396
           A  +D                        TL+E  ++   +   +         +  +  
Sbjct: 93  A--LDA----------TLQQ-----RPKETLDELVSYIRTHAPNV--EIMADIATVEEAK 133

Query: 397 KAMGAGADFV--MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG--VVDGGCTSPG 452
            A   G D++   L G  +          + +      + D+   +    + +G   +P 
Sbjct: 134 NAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQ-----FLKDVLQSVDAKVIAEGNVITPD 188

Query: 453 DVAKAMGAGADFVMLGG 469
              + M  G    ++GG
Sbjct: 189 MYKRVMDLGVHCSVVGG 205

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 133 EYICLDVANG--YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG 190
           E I LD        +T  + V  IR   P +V I  ++ T E  +     G D I   + 
Sbjct: 90  EVIALDATLQQRPKETLDELVSYIRTHAP-NVEIMADIATVEEAKNAARLGFDYIGTTLH 148

Query: 191 PGSVCTTRLKNKTSDFFLIQFYSCIPQA-------GNVVTGEMVEELILSGADVIKVG 241
             +  T       +DF  +     +          GNV+T +M + ++  G     VG
Sbjct: 149 GYTSYTQGQLLYQNDFQFL--KDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 40/253 (15%), Positives = 67/253 (26%), Gaps = 73/253 (28%)

Query: 330 YQGVPIIAANMDTVGTFEMAKHL--AKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADG 387
             G   +   ++ +    +A H+   +  +      +  L E  A  +  P  +     G
Sbjct: 131 RYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVG 190

Query: 388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIE---------YMFFPLVG---- 434
              S              V + G  AG    G     +E         +     +G    
Sbjct: 191 HGLSREAALALRDLPLAAVDVAG--AG----GTSWARVEEWVRFGEVRHPELCEIGIPTA 244

Query: 435 ----DMNSYLGGV---VDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK 487
               ++   L  +     GG  +  D AKA+  GAD + +          G E       
Sbjct: 245 RAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAE------- 297

Query: 488 KVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA 547
                               VA +                   + D L  LR+A   +GA
Sbjct: 298 -------------------RVAAW-------------------IGDYLEELRTALFAIGA 319

Query: 548 SKLKELPRRATFI 560
              KE   R   +
Sbjct: 320 RNPKEARGRVERV 332

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 133 EYICLDV---ANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189
             I +D              F+R+++E YP + ++  ++ T +       +G D +    
Sbjct: 103 AVIAMDCTKRDRHDGLDIASFIRQVKEKYP-NQLLMADISTFDEGLVAHQAGIDFV---- 157

Query: 190 GPGSVCTTRLKNKTSDFFLIQFYSCIPQ------AGNVVTGEMVEELILSGADVIKVG 241
           G      T    + +   +    +           G + + E  +++   G   I VG
Sbjct: 158 GTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 387 GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV-D 445
             C+S  D       GAD +  G   +G+          E    PLV  ++     V+ +
Sbjct: 134 ADCSSVDDGLACQRLGADII--GTTMSGY----TTPDTPEEPDLPLVKALHDAGCRVIAE 187

Query: 446 GGCTSPGDVAKAMGAGADFVMLGGMFAG 473
           G   SP   A+A+  GA  V +G     
Sbjct: 188 GRYNSPALAAEAIRYGAWAVTVGSAITR 215

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 20/144 (13%)

Query: 146 TFVDFVRRIREMYPKH-----------VIIAGNVVT--GEMVEELILSGADVIKV----G 188
           T  D +RR      K+            +      T     ++ L+LS +  + V    G
Sbjct: 108 TVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG 167

Query: 189 IGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVC 248
              G V  T L   +    +++       +      E    L+    ++         + 
Sbjct: 168 NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIM 227

Query: 249 TTRLKTGVGYPQFSAVLECADAAH 272
           T  +           V E A    
Sbjct: 228 TRDVIVA---TPHMTVHEVALKMA 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	671
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	100.0
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	100.0
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	100.0
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	100.0
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	100.0
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	100.0
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	100.0
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	100.0
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	100.0
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	100.0
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	100.0
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	100.0
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	100.0
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	100.0
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	100.0
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	100.0
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	100.0
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	100.0
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	100.0
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	100.0
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	100.0
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.98
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	99.97
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.97
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.97
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	99.97
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.95
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.92
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.9
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.89
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.89
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	99.81
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.81
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.8
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.59
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.56
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.41
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	99.35
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	99.28
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	99.25
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.22
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.2
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	99.16
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.12
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.11
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.1
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.03
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.01
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	98.98
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	98.98
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	98.96
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	98.93
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	98.92
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	98.85
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	98.81
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	98.7
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	98.69
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	98.68
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	98.66
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	98.64
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	98.61
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	98.59
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	98.43
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	98.37
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.29
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	98.28
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	98.2
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.18
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	98.09
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	98.09
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.04
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	98.03
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.97
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	97.88
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	97.81
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	97.57
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	97.55
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	97.54
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.49
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	97.27
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.24
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	97.23
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	97.19
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.19
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	97.16
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.11
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.1
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.08
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.08
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.06
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	97.06
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.04
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	97.04
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	97.0
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.0
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.92
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.88
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	96.79
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	96.74
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	96.72
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	96.69
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	96.65
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	96.64
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.62
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.6
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	96.52
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	96.52
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	96.43
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	96.3
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	96.22
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	96.2
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.18
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.08
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	95.95
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	95.95
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	95.81
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	95.55
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.55
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	95.53
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	95.48
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	95.26
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	95.17
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	95.09
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	95.02
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	94.9
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	94.89
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	94.87
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	94.81
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	94.78
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	94.75
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	94.62
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.59
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	94.57
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	94.45
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	94.44
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	94.23
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.18
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	94.08
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	94.01
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	93.81
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	93.65
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	93.64
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	93.59
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	93.5
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	93.46
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	93.43
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	93.41
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	93.33
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	93.11
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	93.09
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	93.0
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	92.97
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	92.95
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	92.8
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	92.74
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	92.59
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	92.58
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	92.56
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	92.53
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	92.52
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	92.47
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	92.4
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	92.4
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	92.23
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	92.07
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	92.05
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	92.03
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	91.98
3oa3_A	288	Aldolase; structural genomics, seattle structural	91.95
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	91.32
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	91.26
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	91.2
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	91.12
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	91.05
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	90.77
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	90.73
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	90.71
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	90.59
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	90.57
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	90.53
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	90.5
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	90.34
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	90.29
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	90.22
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	90.18
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	89.92
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	89.89
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	89.84
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	89.83
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	89.66
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	89.57
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	88.86
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	88.65
1viz_A	240	PCRB protein homolog; structural genomics, unknown	88.52
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	88.06
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	87.96
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	87.88
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	87.57
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	87.24
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	87.21
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	87.06
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	86.77
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	86.66
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	86.63
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	86.61
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	86.61
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	86.37
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	85.89
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	85.89
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	85.84
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	85.75
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	85.42
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	84.99
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	84.99
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	84.57
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	84.57
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	84.51
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	84.1
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	84.09
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	83.99
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	83.87
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	83.74
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	83.72
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	83.66
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	83.62
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	83.53
3ble_A	337	Citramalate synthase from leptospira interrogans;	83.52
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	83.39
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	83.32
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	82.79
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	82.55
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	82.32
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	82.06
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	81.09
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	80.89
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	80.55
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	80.45
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	80.39
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	80.38

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=100.00  E-value=1.5e-75  Score=645.82  Aligned_cols=393  Identities=30%  Similarity=0.437  Sum_probs=289.6

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA   96 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~   96 (671)
                      .+||||||+|+|++++++| ++|||+|+||    ++++|++||++++||+||+.+||+|||++||||+||+||++|+|++
T Consensus        58 ~GLTfDDVlLvP~~s~v~p-~~Vdl~t~lt----~~i~L~iPlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa~  132 (556)
T 4af0_A           58 GGLTYNDFLVLPGHINFPA-SDVSLQSKAT----KNIVLNTPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAA  132 (556)
T ss_dssp             CSCCGGGEEECCCCCCSCG-GGCCCCEEEE----TTEEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHH
T ss_pred             CCCChhhEEEccCCCCCCc-ccceeeeecc----CCcEeCCCEEecCcccccCHHHHHHHHHCCCeEEEcCCCCHHHHHH
Confidence            5899999999999999987 5999999999    7999999999999999999999999999999999999999999988


Q ss_pred             hhhc----------Ccccccc------e-------EEe--------------cC-CChhhH------HHHHHHHHhCCC-
Q psy3862          97 FAVQ----------NPDVIKH------V-------AVS--------------SG-ISAKDL------AGLKEILAALPE-  131 (671)
Q Consensus        97 ~i~~----------~p~~~~~------~-------~v~--------------~G-~~~~d~------~rl~~l~~a~~~-  131 (671)
                      ++++          +|.++.|      +       .++              .| ++.+|+      ..+.++|+.... 
T Consensus       133 ~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~~lvt  212 (556)
T 4af0_A          133 MVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVT  212 (556)
T ss_dssp             HHHHHHHCCC----------------------------------------------------------------------
T ss_pred             HHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcccceEE
Confidence            8742          2222111      0       000              11 111121      123333332000 


Q ss_pred             -ceEEEeeccCCCC--------------hHHHH--HHHHHH--HhCCCce--------EEEEEec----cHHHHHHHHHC
Q psy3862         132 -IEYICLDVANGYT--------------QTFVD--FVRRIR--EMYPKHV--------IIAGNVV----TGEMVEELILS  180 (671)
Q Consensus       132 -~d~Ivld~a~G~~--------------~~~~~--~ik~lr--~~~P~~~--------li~g~v~----t~e~a~~Li~A  180 (671)
                       ..-+.++.++...              .+++-  .++++.  +.||++.        .+++++.    +.+++++|++|
T Consensus       213 ~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv~A  292 (556)
T 4af0_A          213 GSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAEA  292 (556)
T ss_dssp             ---------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHHhc
Confidence             0001122221110              01111  124442  3588764        3566665    36899999999


Q ss_pred             CCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862         181 GADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG  255 (671)
Q Consensus       181 GaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g  255 (671)
                      |+|+|++|++|||+     .++.+++.+|++++        +||||+|++++++|+++|||+|||||||||+||||+|+|
T Consensus       293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~v--------iaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~G  364 (556)
T 4af0_A          293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDV--------IAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMA  364 (556)
T ss_dssp             TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEE--------EEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCC
T ss_pred             CCcEEEEeccccccHHHHHHHHHHHhhCCcceE--------EeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccC
Confidence            99999999999996     23345555555433        699999999999999999999999999999999999999


Q ss_pred             cCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcce
Q psy3862         256 VGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPI  335 (671)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPi  335 (671)
                      +|+||+|||+|||++|+++                                                         ++||
T Consensus       365 vG~PQ~tAi~~~a~~a~~~---------------------------------------------------------~vpv  387 (556)
T 4af0_A          365 VGRPQGTAVYAVAEFASRF---------------------------------------------------------GIPC  387 (556)
T ss_dssp             SCCCHHHHHHHHHHHHGGG---------------------------------------------------------TCCE
T ss_pred             CCCcHHHHHHHHHHHHHHc---------------------------------------------------------CCCE
Confidence            9999999999999999875                                                         4666


Q ss_pred             EecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccc
Q psy3862         336 IAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGH  415 (671)
Q Consensus       336 Iaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh  415 (671)
                      ||                                                                              
T Consensus       388 IA------------------------------------------------------------------------------  389 (556)
T 4af0_A          388 IA------------------------------------------------------------------------------  389 (556)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             cccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCc
Q psy3862         416 DQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGM  495 (671)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~  495 (671)
                                                   +||+..+++++|++.+|||+||+|.+++|+.++|++.+..+|.++|.|+||
T Consensus       390 -----------------------------DGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGM  440 (556)
T 4af0_A          390 -----------------------------DGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGM  440 (556)
T ss_dssp             -----------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECT
T ss_pred             -----------------------------cCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeeccc
Confidence                                         899999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhh
Q psy3862         496 SSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQD  575 (671)
Q Consensus       496 ~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~  575 (671)
                      +|+.||.+.....     .+|..                                                         
T Consensus       441 gS~~Am~~~~~~~-----~~~~~---------------------------------------------------------  458 (556)
T 4af0_A          441 GSIEAMEHTQRGS-----ASGKR---------------------------------------------------------  458 (556)
T ss_dssp             TSHHHHTTC-----------------------------------------------------------------------
T ss_pred             ccHHHHHhcccCC-----ccccc---------------------------------------------------------
Confidence            9999997521100     00000                                                         


Q ss_pred             hcccccccceeeccccccccccccccchhcccc-ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccccc
Q psy3862         576 ILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR  654 (671)
Q Consensus       576 ~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~  654 (671)
                               .+.+.       ...+.+|||.+. ++++|||++++|||||||+++|+||+|||||+|+|+|+++|+|||+
T Consensus       459 ---------~~~~~-------~~~s~dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~  522 (556)
T 4af0_A          459 ---------SILGL-------DNAATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHS  522 (556)
T ss_dssp             ------------CC-------SCSSEEECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             ---------ccccc-------cccchhhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Confidence                     00000       122356777654 5689999999999999999999999999999999999999999999


Q ss_pred             cc-----EEEEeccc
Q psy3862         655 RA-----TFIRCTAQ  664 (671)
Q Consensus       655 ~a-----~Fvrvt~q  664 (671)
                      ++     +|+|+|.+
T Consensus       523 ~a~~g~~rf~~iT~a  537 (556)
T 4af0_A          523 CARSGSLRFELRTAS  537 (556)
T ss_dssp             HHHHTCSCEEECCCC
T ss_pred             hhhccCceEEEEChh
Confidence            98     99999975

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=100.00  E-value=6.8e-60  Score=513.68  Aligned_cols=318  Identities=22%  Similarity=0.311  Sum_probs=227.4

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      ...+||||||||+|+||++.| +||||+|+|+    +.+.+++|||+||||||++++||++|++.||||+||+|+|+|+|
T Consensus         6 ~~~~~t~ddvll~P~~~~~~~-~~v~l~t~lt----~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~~e~~   80 (400)
T 3ffs_A            6 IGKGLTFEDILLVPNYSEVLP-REVSLETKLT----KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQ   80 (400)
T ss_dssp             EEEECCGGGEEECCCCBCSCG-GGCCCCEESS----SSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECSSSCHHHH
T ss_pred             cccCCCceeEEEecCCCccCH-HHccCccchh----cccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCCCCCHHHH
Confidence            357899999999999999998 8999999997    67899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccccc-------------------------------------------ceeeecccC-hhhHHHHHHcCCcEE
Q psy3862         371 KAFAVQNPDVIK-------------------------------------------HVADGGCTS-PGDVAKAMGAGADFV  406 (671)
Q Consensus       371 ~~~v~~~~~~~~-------------------------------------------~v~~~~~~~-~~~~~~l~~aG~d~i  406 (671)
                      .+++++++..-.                                           .+.++.++. .++++.++++|+|+|
T Consensus        81 ~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvI  160 (400)
T 3ffs_A           81 VNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVI  160 (400)
T ss_dssp             HHHHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEE
Confidence            999965422100                                           112222233 355677799999999


Q ss_pred             EEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862         407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKD  485 (671)
Q Consensus       407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~  485 (671)
                      ++| ++|||+....++++.++..|          +..++.|++.+.+.++ ++++|||+|+||+ ++| +.|+||.+   
T Consensus       161 vld-ta~G~~~~~~e~I~~ik~~~----------~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~-g~G-s~~~tr~~---  224 (400)
T 3ffs_A          161 VLD-SAHGHSLNIIRTLKEIKSKM----------NIDVIVGNVVTEEATKELIENGADGIKVGI-GPG-SICTTRIV---  224 (400)
T ss_dssp             EEC-CSCCSBHHHHHHHHHHHTTC----------CCEEEEEEECSHHHHHHHHHTTCSEEEECC-----------CC---
T ss_pred             EEe-CCCCCcccHHHHHHHHHhcC----------CCeEEEeecCCHHHHHHHHHcCCCEEEEeC-CCC-cCcccccc---
Confidence            999 89999877777655444433          2234556788999888 5799999999996 999 89999853   


Q ss_pred             CeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcc
Q psy3862         486 GKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRA  557 (671)
Q Consensus       486 g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a  557 (671)
                           .++|.|+++++.+++..+.++   ..++|+   |.+++|++||++     ||+|+.|++++|||++.        
T Consensus       225 -----~g~g~p~~~al~~v~~~~~~~~IPVIA~GG---I~~~~di~kalalGAd~V~vGt~f~~t~Es~~~~--------  288 (400)
T 3ffs_A          225 -----AGVGVPQITAIEKCSSVASKFGIPIIADGG---IRYSGDIGKALAVGASSVMIGSILAGTEESPGEK--------  288 (400)
T ss_dssp             -----SCBCCCHHHHHHHHHHHHTTTTCCEEEESC---CCSHHHHHHHHTTTCSEEEECGGGTTBTTSSCCE--------
T ss_pred             -----cccchhHHHHHHHHHHHHHhcCCCEEecCC---CCCHHHHHHHHHcCCCEEEEChHHhcCCCCCchh--------
Confidence                 467899999999887554322   134443   789999999999     99999999999999884        


Q ss_pred             eEEEecccccccccchhhhcccccccceeeccccccccccccccchhccc---cccccCCCceEecccccCHHHHHHHHH
Q psy3862         558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ---LNNVAAEGKTVQVPYRGDVNDTVQDIL  634 (671)
Q Consensus       558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~---~~~~~~eG~~~~v~~kG~v~~~l~~l~  634 (671)
                       +                +.+| +++|.||||+|+.||+ .++++||+..   .++.+|||++++|||||||+++|+||+
T Consensus       289 -~----------------~~~g-~~~k~y~Gm~s~~am~-~~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~  349 (400)
T 3ffs_A          289 -E----------------LIGD-TVYKYYRGMGSVGAMK-SGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLV  349 (400)
T ss_dssp             -E----------------ESSS-SEEEC------------------------------------CEECCBCHHHHHHHHH
T ss_pred             -h----------------hcCC-eeeeeecCcchHHHHh-ccccchhhcccccccccCCCCcEEecCCCCCHHHHHHHHH
Confidence             1                2346 6789999999999996 5788999863   367899999999999999999999999


Q ss_pred             HHHhhhccccCcccccccccccEEEEeccc
Q psy3862         635 GGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       635 gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      |||||+|+|+|+++|+|||+|++|+|+|++
T Consensus       350 ~glr~~~~y~G~~~i~el~~~~~f~~~t~~  379 (400)
T 3ffs_A          350 GGLRSCMGYLGSASIEELWKKSSYVEITTS  379 (400)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHCCEEECCC-
T ss_pred             HHHHHhhhhcCcccHHHHHhCCeEEEEccc
Confidence            999999999999999999999999999975

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=100.00  E-value=5.8e-57  Score=486.44  Aligned_cols=332  Identities=34%  Similarity=0.569  Sum_probs=271.9

Q ss_pred             ccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHH
Q psy3862          14 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE   93 (671)
Q Consensus        14 ~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Ee   93 (671)
                      +.+.+||||||+|+|+++++.| ++|||+|+|+    +.+++++||++++|+++++.+||.+++++||+|+||+++++|+
T Consensus         9 ~~~~~~~fddv~lvp~~~~~~~-~~vdl~t~lt----~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~s~e~   83 (366)
T 4fo4_A            9 IAKEALTFDDVLLVPAHSTVLP-NTADLRTRLT----KNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQ   83 (366)
T ss_dssp             CCCCCCCGGGEEECCCCCCCCG-GGCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHH
T ss_pred             hhcccCCcceEEEECCCCCCCh-hhcccceecc----cccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCCCHHH
Confidence            3467999999999999999887 5999999998    7899999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCccc-ccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHH
Q psy3862          94 WKAFAVQNPDV-IKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGE  172 (671)
Q Consensus        94 q~~~i~~~p~~-~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e  172 (671)
                      |.+++++.... ...+.++.+.+++..++++.++++  +++++++|.++|++..+.+.++++++.+|...+++|++.|.+
T Consensus        84 ~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~liea--Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e  161 (366)
T 4fo4_A           84 QAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAE  161 (366)
T ss_dssp             HHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHH
T ss_pred             HHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHH
Confidence            98887543211 113444455555667899999998  789999999999999999999999988988777888888888


Q ss_pred             HHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccce
Q psy3862         173 MVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  252 (671)
Q Consensus       173 ~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~  252 (671)
                      .++.|+++|||+|                                                     +||+|||++||||.
T Consensus       162 ~A~~a~~aGAD~I-----------------------------------------------------~vG~gpGs~~~tr~  188 (366)
T 4fo4_A          162 GARALIEAGVSAV-----------------------------------------------------KVGIGPGSICTTRI  188 (366)
T ss_dssp             HHHHHHHHTCSEE-----------------------------------------------------EECSSCSTTBCHHH
T ss_pred             HHHHHHHcCCCEE-----------------------------------------------------EEecCCCCCCCccc
Confidence            8887777777777                                                     88999999999999


Q ss_pred             ecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeC
Q psy3862         253 KTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQG  332 (671)
Q Consensus       253 V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~  332 (671)
                      +.++|.||++++.+|+++++.                                                         .+
T Consensus       189 ~~g~g~p~~~~l~~v~~~~~~---------------------------------------------------------~~  211 (366)
T 4fo4_A          189 VTGVGVPQITAIADAAGVANE---------------------------------------------------------YG  211 (366)
T ss_dssp             HHCCCCCHHHHHHHHHHHHGG---------------------------------------------------------GT
T ss_pred             ccCcccchHHHHHHHHHHHhh---------------------------------------------------------cC
Confidence            999999999999999998864                                                         25


Q ss_pred             cceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccc
Q psy3862         333 VPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF  412 (671)
Q Consensus       333 iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a  412 (671)
                      +|||+                                                                           
T Consensus       212 iPVIA---------------------------------------------------------------------------  216 (366)
T 4fo4_A          212 IPVIA---------------------------------------------------------------------------  216 (366)
T ss_dssp             CCEEE---------------------------------------------------------------------------
T ss_pred             CeEEE---------------------------------------------------------------------------
Confidence            88888                                                                           


Q ss_pred             ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862         413 AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF  492 (671)
Q Consensus       413 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g  492 (671)
                                                      +||+....++++++.+|||+|++|....++.+|+++.+..        
T Consensus       217 --------------------------------~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~--------  256 (366)
T 4fo4_A          217 --------------------------------DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILY--------  256 (366)
T ss_dssp             --------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEE--------
T ss_pred             --------------------------------eCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhh--------
Confidence                                            7998788999999999999999996444444444433222        


Q ss_pred             eCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccc
Q psy3862         493 YGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDT  572 (671)
Q Consensus       493 ~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~  572 (671)
                                                                                                      
T Consensus       257 --------------------------------------------------------------------------------  256 (366)
T 4fo4_A          257 --------------------------------------------------------------------------------  256 (366)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcccccccceeeccccccccccccccchhccc---cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccc
Q psy3862         573 VQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ---LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL  649 (671)
Q Consensus       573 ~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~---~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l  649 (671)
                           +| +++|.||||+|..||++ ++++||+..   .++.+|||++++|||||||+++|+||+|||||+|+|+|+++|
T Consensus       257 -----~g-~~~k~y~gm~s~~am~~-~~~~ry~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~  329 (366)
T 4fo4_A          257 -----QG-RSYKAYRGMGSLGAMSK-GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATV  329 (366)
T ss_dssp             -----TT-EEEEEEECTTSHHHHCC----------------CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBH
T ss_pred             -----CC-ceeEEeeccccHHHHhc-ccccchhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccH
Confidence                 23 35677777777777753 566777753   257899999999999999999999999999999999999999


Q ss_pred             cccccccEEEEeccc
Q psy3862         650 KELPRRATFIRCTAQ  664 (671)
Q Consensus       650 ~el~~~a~Fvrvt~q  664 (671)
                      +|||+|++|+|+|++
T Consensus       330 ~~~~~~~~f~~~t~~  344 (366)
T 4fo4_A          330 EDLRTKAQFVRISGA  344 (366)
T ss_dssp             HHHHHHCCEEECCHH
T ss_pred             HHHHhCCeEEEEccc
Confidence            999999999999975

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=100.00  E-value=1e-58  Score=511.89  Aligned_cols=252  Identities=22%  Similarity=0.261  Sum_probs=219.9

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      ..+||||||||+|+||++.| +||||+|+|+    ++++|+||||||||||||+.+||++||++||||+||||+|+|+|+
T Consensus        57 ~~GLTfDDVlLvP~~s~v~p-~~Vdl~t~lt----~~i~L~iPlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa  131 (556)
T 4af0_A           57 NGGLTYNDFLVLPGHINFPA-SDVSLQSKAT----KNIVLNTPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQA  131 (556)
T ss_dssp             HCSCCGGGEEECCCCCCSCG-GGCCCCEEEE----TTEEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             CCCCChhhEEEccCCCCCCc-ccceeeeecc----CCcEeCCCEEecCcccccCHHHHHHHHHCCCeEEEcCCCCHHHHH
Confidence            35899999999999999999 5999999998    689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccc-----------------------------------------------------------------------
Q psy3862         372 AFAVQNPDV-----------------------------------------------------------------------  380 (671)
Q Consensus       372 ~~v~~~~~~-----------------------------------------------------------------------  380 (671)
                      ++|++++..                                                                       
T Consensus       132 ~~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~~lv  211 (556)
T 4af0_A          132 AMVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVV  211 (556)
T ss_dssp             HHHHHHHHCCC---------------------------------------------------------------------
T ss_pred             HHHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcccceE
Confidence            998653110                                                                       


Q ss_pred             ----------------------cc-----------------------------------ceeeecccCh---hhHHHHHH
Q psy3862         381 ----------------------IK-----------------------------------HVADGGCTSP---GDVAKAMG  400 (671)
Q Consensus       381 ----------------------~~-----------------------------------~v~~~~~~~~---~~~~~l~~  400 (671)
                                            ++                                   .++++.++++   ++.+.|++
T Consensus       212 t~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv~  291 (556)
T 4af0_A          212 TGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAE  291 (556)
T ss_dssp             ----------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHHh
Confidence                                  00                                   1344455554   45566799


Q ss_pred             cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCC
Q psy3862         401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG  479 (671)
Q Consensus       401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt  479 (671)
                      ||+|+|||| ++|||+++++++++.++..||.++         |++|||+|++.++ ++++|||+||||+ ||| |+|||
T Consensus       292 AGvD~iviD-~ahGhs~~v~~~i~~ik~~~p~~~---------viaGNVaT~e~a~~Li~aGAD~vkVGi-GpG-SiCtT  359 (556)
T 4af0_A          292 AGLDVVVLD-SSQGNSVYQIEFIKWIKQTYPKID---------VIAGNVVTREQAAQLIAAGADGLRIGM-GSG-SICIT  359 (556)
T ss_dssp             TTCCEEEEC-CSCCCSHHHHHHHHHHHHHCTTSE---------EEEEEECSHHHHHHHHHHTCSEEEECS-SCS-TTBCC
T ss_pred             cCCcEEEEe-ccccccHHHHHHHHHHHhhCCcce---------EEeccccCHHHHHHHHHcCCCEEeecC-CCC-ccccc
Confidence            999999999 999999999999999999999884         7899999999999 5699999999996 999 99999


Q ss_pred             cEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCccccc
Q psy3862         480 ELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLK  551 (671)
Q Consensus       480 ~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~  551 (671)
                      |++        +|+|+||+||+.+|+.++++|.   ++||+   |+|+|||+||||     ||||++|||++|+||+.+.
T Consensus       360 r~v--------~GvG~PQ~tAi~~~a~~a~~~~vpvIADGG---I~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~  428 (556)
T 4af0_A          360 QEV--------MAVGRPQGTAVYAVAEFASRFGIPCIADGG---IGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFY  428 (556)
T ss_dssp             TTT--------CCSCCCHHHHHHHHHHHHGGGTCCEEEESC---CCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEE
T ss_pred             ccc--------cCCCCcHHHHHHHHHHHHHHcCCCEEecCC---cCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEE
Confidence            985        6899999999999999888873   56664   799999999999     9999999999999999521


Q ss_pred             ccCCcceEEEecccccccccchhhhcccccccceeecccccccccc
Q psy3862         552 ELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPR  597 (671)
Q Consensus       552 e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~  597 (671)
                                               .+| +++|.||||+|..||++
T Consensus       429 -------------------------~~G-~~~K~YrGMgS~~Am~~  448 (556)
T 4af0_A          429 -------------------------HEG-KRVKVYRGMGSIEAMEH  448 (556)
T ss_dssp             -------------------------ETT-EEEEEEECTTSHHHHTT
T ss_pred             -------------------------ECC-EEEEeecccccHHHHHh
Confidence                                     235 57899999999999974

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=100.00  E-value=1.1e-54  Score=468.68  Aligned_cols=330  Identities=33%  Similarity=0.532  Sum_probs=251.2

Q ss_pred             cccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHH
Q psy3862          13 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLE   92 (671)
Q Consensus        13 ~~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~E   92 (671)
                      .+...+||||||+|+|+++++.| ++|||+|+|+    +.++|++||+++||+++++.+||.+++++||+|+||+++++|
T Consensus         7 ~~~~~~~~fddv~l~p~~~~~~~-~~vdl~t~l~----~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~~s~e   81 (361)
T 3khj_A            7 KNIGKGLTFEDILLVPNYSEVLP-REVSLETKLT----KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDME   81 (361)
T ss_dssp             CEEEECCCGGGEEECCCCBCCCG-GGCCCCEESS----SSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSSSCHH
T ss_pred             cccccCCCcceEEEECCCCCCCH-HHccCceecc----cccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecCCCHH
Confidence            34467999999999999888775 8999999997    789999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccH
Q psy3862          93 EWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTG  171 (671)
Q Consensus        93 eq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~  171 (671)
                      ++.+++++.. ....++.++.+...  .++++.++++  +++++++|.++|++..+.+.++++++.+ ...++++++.|.
T Consensus        82 ~~~~~I~~vk~~~~~pvga~ig~~~--~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Vivg~v~t~  156 (361)
T 3khj_A           82 SQVNEVLKVKNSGGLRVGAAIGVNE--IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTE  156 (361)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECTTC--HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEEEEECSH
T ss_pred             HHHHHHHHHHhccCceEEEEeCCCH--HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEEccCCCH
Confidence            9988776432 22346676666543  7788889998  8899999999999998999999988776 345666677777


Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  251 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr  251 (671)
                      +.++.|+++|||+|                                                     +||++||++||||
T Consensus       157 e~A~~l~~aGaD~I-----------------------------------------------------~VG~~~Gs~~~tr  183 (361)
T 3khj_A          157 EATKELIENGADGI-----------------------------------------------------KVGIGPGSICTTR  183 (361)
T ss_dssp             HHHHHHHHTTCSEE-----------------------------------------------------EECSSCCTTCCHH
T ss_pred             HHHHHHHHcCcCEE-----------------------------------------------------EEecCCCcCCCcc
Confidence            77777766666666                                                     8899999999999


Q ss_pred             eecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862         252 LKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ  331 (671)
Q Consensus       252 ~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~  331 (671)
                      .++|+|.||++++.+|+++++.                                                         .
T Consensus       184 ~~~g~g~p~~~~i~~v~~~~~~---------------------------------------------------------~  206 (361)
T 3khj_A          184 IVAGVGVPQITAIEKCSSVASK---------------------------------------------------------F  206 (361)
T ss_dssp             HHTCBCCCHHHHHHHHHHHHHH---------------------------------------------------------H
T ss_pred             cccCCCCCcHHHHHHHHHHHhh---------------------------------------------------------c
Confidence            9999999999999999998864                                                         2


Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGM  411 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~  411 (671)
                      ++|||+                                                                          
T Consensus       207 ~iPVIA--------------------------------------------------------------------------  212 (361)
T 3khj_A          207 GIPIIA--------------------------------------------------------------------------  212 (361)
T ss_dssp             TCCEEE--------------------------------------------------------------------------
T ss_pred             CCeEEE--------------------------------------------------------------------------
Confidence            578887                                                                          


Q ss_pred             cccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEE
Q psy3862         412 FAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKL  491 (671)
Q Consensus       412 a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~  491 (671)
                                                       +||+....++++++.+|||+|++|....++.+|+++.+.        
T Consensus       213 ---------------------------------~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~--------  251 (361)
T 3khj_A          213 ---------------------------------DGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKEL--------  251 (361)
T ss_dssp             ---------------------------------ESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEE--------
T ss_pred             ---------------------------------ECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhh--------
Confidence                                             799878899999999999999999644443333333322        


Q ss_pred             eeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccccccccc
Q psy3862         492 FYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND  571 (671)
Q Consensus       492 g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~  571 (671)
                                                                                                      
T Consensus       252 --------------------------------------------------------------------------------  251 (361)
T 3khj_A          252 --------------------------------------------------------------------------------  251 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhcccccccceeeccccccccccccccchhccc---cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccc
Q psy3862         572 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ---LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASK  648 (671)
Q Consensus       572 ~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~---~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~  648 (671)
                           .+| +++|.||||+|..||+ .++++||+..   .++.+|||++++|||||||+++|+||+|||||+|+|+|+++
T Consensus       252 -----~~g-~~~k~y~gm~s~~a~~-~~~~~~y~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~  324 (361)
T 3khj_A          252 -----IGD-TVYKYYRGMGSVGAMK-SGSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSAS  324 (361)
T ss_dssp             -----ETT-EEEEEC----------------------------------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             -----cCC-eEEEEeeccchHHHHh-ccchhhhhcccccccccCCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCcc
Confidence                 124 4567788888888885 4567787753   36789999999999999999999999999999999999999


Q ss_pred             ccccccccEEEEeccc
Q psy3862         649 LKELPRRATFIRCTAQ  664 (671)
Q Consensus       649 l~el~~~a~Fvrvt~q  664 (671)
                      |+|||+|++|+|+|++
T Consensus       325 ~~~~~~~~~~~~~~~~  340 (361)
T 3khj_A          325 IEELWKKSSYVEITTS  340 (361)
T ss_dssp             HHHHHHHCCEEECCC-
T ss_pred             HHHHHhCCeEEEEccc
Confidence            9999999999999975

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=1.5e-53  Score=477.56  Aligned_cols=331  Identities=35%  Similarity=0.594  Sum_probs=269.0

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ...+||||||+|+|+++++.| ++|||+|+||    +++.+++||++++|+++|+.+||+++|+.||+|+||+|+++|+|
T Consensus         7 ~~~~~t~~d~~~~p~~~~~~~-~~~~~~t~lt----~~i~l~iPivsa~MdtVTe~~ma~a~a~~GGiGvI~~n~s~e~q   81 (496)
T 4fxs_A            7 AKEALTFDDVLLVPAHSTVLP-NTADLRTRLT----KNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQ   81 (496)
T ss_dssp             CSCCCCGGGEEECCCCCCCCG-GGCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHHTCEEEECSSSCHHHH
T ss_pred             cccCcCcccEEEecCcccccc-ccccccceec----cccccCCCceecCcchhhHHHHHHHHHHcCCcceecCCCCHHHH
Confidence            467999999999999999987 6999999999    89999999999999999999999999999999999999999987


Q ss_pred             HHhhhc----------Ccc-------------------------cc------------------------------c--c
Q psy3862          95 KAFAVQ----------NPD-------------------------VI------------------------------K--H  107 (671)
Q Consensus        95 ~~~i~~----------~p~-------------------------~~------------------------------~--~  107 (671)
                      .+++.+          +|.                         ..                              .  +
T Consensus        82 a~~V~~Vk~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~  161 (496)
T 4fxs_A           82 AAQVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVAAVMTPKERL  161 (496)
T ss_dssp             HHHHHHHHHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGC
T ss_pred             HHHHHhccccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCC
Confidence            655420          000                         00                              0  0


Q ss_pred             ------------------------------------------------------------eEEecCCChhhHHHHHHHHH
Q psy3862         108 ------------------------------------------------------------VAVSSGISAKDLAGLKEILA  127 (671)
Q Consensus       108 ------------------------------------------------------------~~v~~G~~~~d~~rl~~l~~  127 (671)
                                                                                  +.+++|...++.++++.+++
T Consensus       162 vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~  241 (496)
T 4fxs_A          162 ATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVE  241 (496)
T ss_dssp             CEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHh
Confidence                                                                        00112223344678888888


Q ss_pred             hCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcch
Q psy3862         128 ALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFF  207 (671)
Q Consensus       128 a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~  207 (671)
                      +  +++++.+|.+++++..+.+.++++++.+|...+++|++.+.+.+++|+++|||+|                      
T Consensus       242 a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I----------------------  297 (496)
T 4fxs_A          242 A--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAV----------------------  297 (496)
T ss_dssp             T--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEE----------------------
T ss_pred             c--cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEE----------------------
Confidence            7  7889999999998888889999988888876677777766666666666665555                      


Q ss_pred             hhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccc
Q psy3862         208 LIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQ  287 (671)
Q Consensus       208 ~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (671)
                                                     +||+||||.|+||.++|+|.||++++.+|++++++.             
T Consensus       298 -------------------------------~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~-------------  333 (496)
T 4fxs_A          298 -------------------------------KVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEY-------------  333 (496)
T ss_dssp             -------------------------------EECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGG-------------
T ss_pred             -------------------------------EECCCCCcCcccccccCCCccHHHHHHHHHHHhccC-------------
Confidence                                           899999999999999999999999999999998742             


Q ss_pred             eeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCH
Q psy3862         288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL  367 (671)
Q Consensus       288 ~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~  367 (671)
                                                                  ++|||+                              
T Consensus       334 --------------------------------------------~iPVIa------------------------------  339 (496)
T 4fxs_A          334 --------------------------------------------GIPVIA------------------------------  339 (496)
T ss_dssp             --------------------------------------------TCCEEE------------------------------
T ss_pred             --------------------------------------------CCeEEE------------------------------
Confidence                                                        478887                              


Q ss_pred             HHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeecc
Q psy3862         368 EEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGG  447 (671)
Q Consensus       368 e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG  447 (671)
                                                                                                   +||
T Consensus       340 -----------------------------------------------------------------------------~GG  342 (496)
T 4fxs_A          340 -----------------------------------------------------------------------------DGG  342 (496)
T ss_dssp             -----------------------------------------------------------------------------ESC
T ss_pred             -----------------------------------------------------------------------------eCC
Confidence                                                                                         799


Q ss_pred             ccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCH
Q psy3862         448 CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDV  527 (671)
Q Consensus       448 ~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi  527 (671)
                      +....++++++.+|||+|++|....|+.+|+++.+.                                            
T Consensus       343 I~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~--------------------------------------------  378 (496)
T 4fxs_A          343 IRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVIL--------------------------------------------  378 (496)
T ss_dssp             CCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEE--------------------------------------------
T ss_pred             CCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceee--------------------------------------------
Confidence            888999999999999999999755554444443322                                            


Q ss_pred             HHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccc
Q psy3862         528 NDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  607 (671)
Q Consensus       528 ~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~  607 (671)
                                                                       .+| +++|.||||+|+.||+ .++++||+..
T Consensus       379 -------------------------------------------------~~g-~~~k~~~gm~s~~a~~-~~~~~r~~~~  407 (496)
T 4fxs_A          379 -------------------------------------------------YQG-RSYKAYRGMGSLGAMS-KGSSDRYFQT  407 (496)
T ss_dssp             -------------------------------------------------SSS-CEEEEEECTTSHHHHH-SSSCCSTTTC
T ss_pred             -------------------------------------------------eCC-eEeeeecccchHHHHh-cccccccccc
Confidence                                                             224 3567777777777775 4567777753


Q ss_pred             ---cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         608 ---LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       608 ---~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                         .++.+|||++++|||||+++++|++|++||||+|+|+|+++|+|||++++|+|+|.+
T Consensus       408 ~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~~~~~~~~~~  467 (496)
T 4fxs_A          408 DNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTKAQFVRISGA  467 (496)
T ss_dssp             ---CCCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHHCCEEECCHH
T ss_pred             ccccccccCCccEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhCCeEEEEccc
Confidence               257899999999999999999999999999999999999999999999999999964

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.2e-54  Score=482.51  Aligned_cols=375  Identities=35%  Similarity=0.567  Sum_probs=244.3

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      +.+||||||+|+|+++++.| ++||++|+||    +++.+++|+++++|+++++.+||+++++.||+|+||+|+++|+|.
T Consensus         7 ~~~~t~~d~~~~p~~~~~~~-~~~~~~t~lt----~~i~l~iPivsa~M~tVTe~~lA~ala~~GGiGvI~~~~~~e~~a   81 (490)
T 4avf_A            7 QEALTFDDVLLIPGYSEVLP-KDVSLKTRLT----RGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMGIEQQA   81 (490)
T ss_dssp             EEECCGGGEEECCCCBCSCG-GGSCCCEEEE----TTEEESSSEEECSCTTTCSHHHHHHHHHHTSEEEECCSSCHHHHH
T ss_pred             CCCCCcceEEEeCCCCcccc-cceeeecccc----cCcccCCCccccchhhhCHHHHHHHHHHcCCCccccCCCCHHHHH
Confidence            57999999999999999987 6999999999    899999999999999999999999999999999999999999987


Q ss_pred             Hhhhc---Ccc--cccceEEe----------------------------cC-CChhhHH-------HHHHHHH-h-----
Q psy3862          96 AFAVQ---NPD--VIKHVAVS----------------------------SG-ISAKDLA-------GLKEILA-A-----  128 (671)
Q Consensus        96 ~~i~~---~p~--~~~~~~v~----------------------------~G-~~~~d~~-------rl~~l~~-a-----  128 (671)
                      +++.+   ..+  ...++.+.                            .| ++.+|+.       .+.++|. .     
T Consensus        82 ~~v~~vk~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~vt  161 (490)
T 4avf_A           82 AEVRKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVT  161 (490)
T ss_dssp             HHHHHHHHCCC---------------------------------------------------------------------
T ss_pred             HHhhhhcccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhccccCCcHHHHhccCCCCEE
Confidence            77642   110  00011000                            01 1111211       1222222 0     


Q ss_pred             -CCCc---------------eEEEeeccCCCChHHHHHHHHHH--HhCCCce------E-EEEEe----ccHHHHHHHHH
Q psy3862         129 -LPEI---------------EYICLDVANGYTQTFVDFVRRIR--EMYPKHV------I-IAGNV----VTGEMVEELIL  179 (671)
Q Consensus       129 -~~~~---------------d~Ivld~a~G~~~~~~~~ik~lr--~~~P~~~------l-i~g~v----~t~e~a~~Li~  179 (671)
                       .++.               ...++|. +|....++. .+++.  ..||+..      + +...+    .+.+++++|++
T Consensus       162 v~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT-~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~  239 (490)
T 4avf_A          162 AREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVT-FRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVA  239 (490)
T ss_dssp             -----------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEe-hHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhh
Confidence             0000               0011111 011111111 12221  2355432      2 22233    24689999999


Q ss_pred             CCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEEEcccCCCcccccee
Q psy3862         180 SGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  253 (671)
Q Consensus       180 AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V  253 (671)
                      +|+|+|++|.++||.     .++++++.+|+         +| ++||+.|.+.+++|+++|||+|+||+||||+|+||.+
T Consensus       240 aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~---------~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~  310 (490)
T 4avf_A          240 AGVDVVVVDTAHGHSKGVIERVRWVKQTFPD---------VQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIV  310 (490)
T ss_dssp             TTCSEEEEECSCCSBHHHHHHHHHHHHHCTT---------SEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHH
T ss_pred             cccceEEecccCCcchhHHHHHHHHHHHCCC---------ceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCcccc
Confidence            999999999999985     12223333332         23 6899999999999999999999999999999999999


Q ss_pred             cccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862         254 TGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV  333 (671)
Q Consensus       254 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i  333 (671)
                      .|+|.||++++.+|++++++                                                         .++
T Consensus       311 ~g~g~p~~~~l~~v~~~~~~---------------------------------------------------------~~i  333 (490)
T 4avf_A          311 AGVGVPQISAIANVAAALEG---------------------------------------------------------TGV  333 (490)
T ss_dssp             TCBCCCHHHHHHHHHHHHTT---------------------------------------------------------TTC
T ss_pred             CCCCccHHHHHHHHHHHhcc---------------------------------------------------------CCC
Confidence            99999999999999998864                                                         258


Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA  413 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~  413 (671)
                      |||+                                                                            
T Consensus       334 PVIa----------------------------------------------------------------------------  337 (490)
T 4avf_A          334 PLIA----------------------------------------------------------------------------  337 (490)
T ss_dssp             CEEE----------------------------------------------------------------------------
T ss_pred             cEEE----------------------------------------------------------------------------
Confidence            8888                                                                            


Q ss_pred             cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862         414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~  493 (671)
                                                     +||+....++++++.+|||+|++|....|+.+|+++.+..+        
T Consensus       338 -------------------------------~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~--------  378 (490)
T 4avf_A          338 -------------------------------DGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQ--------  378 (490)
T ss_dssp             -------------------------------ESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEET--------
T ss_pred             -------------------------------eCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeEC--------
Confidence                                           79988999999999999999999975555444444443222        


Q ss_pred             CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccch
Q psy3862         494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTV  573 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~  573 (671)
                                                                                                      
T Consensus       379 --------------------------------------------------------------------------------  378 (490)
T 4avf_A          379 --------------------------------------------------------------------------------  378 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcccccccceeeccccccccc-cccccchhcccc----ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccc
Q psy3862         574 QDILGGLRSACTYVGASKLKELP-RRATFIRCTAQL----NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASK  648 (671)
Q Consensus       574 ~~~~~G~~~~k~y~Gm~s~~a~~-~~~~~~r~~~~~----~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~  648 (671)
                           | +++|.||||+|+.||. +.++++||+...    ++.+|||++++|||||+++++|++|++||||+|+|+|+++
T Consensus       379 -----g-~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~  452 (490)
T 4avf_A          379 -----G-RSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSAD  452 (490)
T ss_dssp             -----T-EEEEC---------------------------------------CBCCBCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             -----C-eEeeeecCcccHHHHhhcccccchhhcccccccccccCCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCc
Confidence                 3 3556777777777773 345667776532    4689999999999999999999999999999999999999


Q ss_pred             ccccccccEEEEeccc
Q psy3862         649 LKELPRRATFIRCTAQ  664 (671)
Q Consensus       649 l~el~~~a~Fvrvt~q  664 (671)
                      |+|||++++|+|+|.+
T Consensus       453 i~~l~~~~~~~~~~~~  468 (490)
T 4avf_A          453 IQQMRTQPQFVRITGA  468 (490)
T ss_dssp             HHHHHHSCCEEEECCC
T ss_pred             HHHHHhCCEEEEEccc
Confidence            9999999999999975

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=100.00  E-value=1.6e-54  Score=465.46  Aligned_cols=311  Identities=23%  Similarity=0.324  Sum_probs=257.2

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      ..+|+||||+|+|++++..||++||++++-++   ..+++++||++||||++++.+||+++++.||+++||+++++|+|.
T Consensus         5 ~~~~~fddv~l~P~~~~~~~r~~vd~~~~t~l---~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~   81 (361)
T 3r2g_A            5 DQAITFDDVLLVPSYNHHESRRVVETTSTDRL---GKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENI   81 (361)
T ss_dssp             -CCCCGGGEEECCCCCCSCTTCCCCCCEECTT---SSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHHH
T ss_pred             ccccccceEEEECCCCCCCccccccceeeEEE---CCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence            57899999999999999999999776663222   367899999999999999999999999999999999999999999


Q ss_pred             HHHhcCcccccceeeecccCh---hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccc
Q psy3862         372 AFAVQNPDVIKHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGC  448 (671)
Q Consensus       372 ~~v~~~~~~~~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~  448 (671)
                      +++++.+.   .+....++.+   +.++.++++|+|+|+|| ++|||+..+.+.++.++..+|.+         .|+.|+
T Consensus        82 ~~i~~~~~---~~~~~~g~~~~~~e~~~~a~~aGvdvI~id-~a~G~~~~~~e~I~~ir~~~~~~---------~Vi~G~  148 (361)
T 3r2g_A           82 QEFKKCKG---PVFVSVGCTENELQRAEALRDAGADFFCVD-VAHAHAKYVGKTLKSLRQLLGSR---------CIMAGN  148 (361)
T ss_dssp             HHHHTCCS---CCBEEECSSHHHHHHHHHHHHTTCCEEEEE-CSCCSSHHHHHHHHHHHHHHTTC---------EEEEEE
T ss_pred             HHHhhcce---EEEEEcCCCHHHHHHHHHHHHcCCCEEEEe-CCCCCcHhHHHHHHHHHHhcCCC---------eEEEcC
Confidence            99987653   2333334443   44566689999999999 89999877666665555554433         356677


Q ss_pred             cCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCH
Q psy3862         449 TSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDV  527 (671)
Q Consensus       449 v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi  527 (671)
                      +.|.+.++ +.++|||+|+||+ ++| +.|+|+.+        .|+|.|+++++.+++..+. -..++|+   |++++|+
T Consensus       149 V~T~e~A~~a~~aGaD~I~Vg~-g~G-~~~~tr~~--------~g~g~p~l~aI~~~~~~~~-PVIAdGG---I~~~~di  214 (361)
T 3r2g_A          149 VATYAGADYLASCGADIIKAGI-GGG-SVCSTRIK--------TGFGVPMLTCIQDCSRADR-SIVADGG---IKTSGDI  214 (361)
T ss_dssp             ECSHHHHHHHHHTTCSEEEECC-SSS-SCHHHHHH--------HCCCCCHHHHHHHHTTSSS-EEEEESC---CCSHHHH
T ss_pred             cCCHHHHHHHHHcCCCEEEEcC-CCC-cCcccccc--------CCccHHHHHHHHHHHHhCC-CEEEECC---CCCHHHH
Confidence            88988888 6799999999996 888 89998753        4688999999999876543 2345554   7899999


Q ss_pred             HHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccc
Q psy3862         528 NDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFI  602 (671)
Q Consensus       528 ~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~  602 (671)
                      .|||+     ||+|++|++++|||++.+.                        +.+| +++|.||||+|.       +.+
T Consensus       215 ~kALa~GAd~V~iGr~f~~t~Espg~~~~------------------------~~~g-~~~k~y~Gm~s~-------~~~  262 (361)
T 3r2g_A          215 VKALAFGADFVMIGGMLAGSAPTPGEVFQ------------------------KDDG-SKVKRYRGMASR-------EAQ  262 (361)
T ss_dssp             HHHHHTTCSEEEESGGGTTBTTSSSCEEE------------------------CTTS-CEEEEESCCHHH-------HHH
T ss_pred             HHHHHcCCCEEEEChHHhCCccCCceeEE------------------------ecCC-eEEEEEecCCCc-------chh
Confidence            99999     9999999999999988422                        1146 578999999993       457


Q ss_pred             hhccc--cccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         603 RCTAQ--LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       603 r~~~~--~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      ||+..  .++++|||++++|||||||+++|++|+|||||+|+|+|+++|+|||+|++|||||++
T Consensus       263 ~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~~~~~~~~~~  326 (361)
T 3r2g_A          263 EAFLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVTQA  326 (361)
T ss_dssp             HHHTTCCSTTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHTCCEEECCST
T ss_pred             hhhhccccccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhCCeEEEEccc
Confidence            77753  255699999999999999999999999999999999999999999999999999987

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=100.00  E-value=7e-52  Score=465.61  Aligned_cols=382  Identities=32%  Similarity=0.505  Sum_probs=257.6

Q ss_pred             hccccccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecC
Q psy3862           9 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY   88 (671)
Q Consensus         9 ~~~~~~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n   88 (671)
                      |....+...+||||||+|+|++++++| ++||++|+||    +++.+++|+++++|+++++.+||++++++||+|+||+|
T Consensus        25 ~~~~~~~~~~~t~~d~~~~p~~~~~~~-~~~~~~t~lt----~~i~l~iPivsa~MdtvTe~~lAia~a~~GgiGvIh~~   99 (511)
T 3usb_A           25 MWESKFVKEGLTFDDVLLVPAKSDVLP-REVSVKTVLS----ESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKN   99 (511)
T ss_dssp             HHHTTTTCCCCCGGGEEECCCCCCCCT-TTSBCCEEEE----TTEEESSSEEECSCTTTCSHHHHHHHHHHTCEEEECSS
T ss_pred             hhhhhhccCCcceEEEEEECCcccccc-cceEeeeEee----cccccCCCccccCchhhcHHHHHHHHHhcCCceeeccc
Confidence            444455678999999999999999987 6999999999    89999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhhhc---Ccc--cccceEEecCCC--------------------------------hh--------------
Q psy3862          89 YTLEEWKAFAVQ---NPD--VIKHVAVSSGIS--------------------------------AK--------------  117 (671)
Q Consensus        89 ~~~Eeq~~~i~~---~p~--~~~~~~v~~G~~--------------------------------~~--------------  117 (671)
                      +++++|.+.+++   ..+  ...++.+.+..+                                .+              
T Consensus       100 ~~~~~q~~~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~~~~~V~~  179 (511)
T 3usb_A          100 MSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISD  179 (511)
T ss_dssp             SCHHHHHHHHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCCSSSBHHH
T ss_pred             CCHHHHHHHHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhccCCCcHHH
Confidence            999998766531   100  000111100000                                00              


Q ss_pred             --------------hHHHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCCce-------EEEEEe----cc
Q psy3862         118 --------------DLAGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPKHV-------IIAGNV----VT  170 (671)
Q Consensus       118 --------------d~~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~~~-------li~g~v----~t  170 (671)
                                    .++.+.++|....-....++|.....  .-...+.++.+  .+|...       .+++.+    .+
T Consensus       180 vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~--~~p~a~~D~~~rl~V~aavg~~~d~  257 (511)
T 3usb_A          180 VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI--EFPNSAKDKQGRLLVGAAVGVTADA  257 (511)
T ss_dssp             HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH--HCTTCCBCTTSCBCCEEEECSSTTH
T ss_pred             hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh--hcccchhhhccceeeeeeeeeccch
Confidence                          11222222222111223444432211  01122333332  233321       222333    23


Q ss_pred             HHHHHHHHHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCC
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPG  245 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~  245 (671)
                      .+++++|+++|+|+|++|.++||.     .++++++.+|++++        ++|||.|.+.++.|.++|||+|+||+|+|
T Consensus       258 ~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~v--------i~g~v~t~e~a~~~~~aGad~i~vg~g~g  329 (511)
T 3usb_A          258 MTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNI--------IAGNVATAEATKALIEAGANVVKVGIGPG  329 (511)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEE--------EEEEECSHHHHHHHHHHTCSEEEECSSCS
T ss_pred             HHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceE--------EeeeeccHHHHHHHHHhCCCEEEECCCCc
Confidence            688999999999999999999975     12333333333222        68999999999999999999999999999


Q ss_pred             CccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeecc
Q psy3862         246 SVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRN  325 (671)
Q Consensus       246 ~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~  325 (671)
                      |+||||.+.|+|.||++++.+|+++++++                                                   
T Consensus       330 si~~~~~~~g~g~p~~~~l~~v~~~~~~~---------------------------------------------------  358 (511)
T 3usb_A          330 SICTTRVVAGVGVPQLTAVYDCATEARKH---------------------------------------------------  358 (511)
T ss_dssp             TTCCHHHHHCCCCCHHHHHHHHHHHHHTT---------------------------------------------------
T ss_pred             cccccccccCCCCCcHHHHHHHHHHHHhC---------------------------------------------------
Confidence            99999999999999999999999988742                                                   


Q ss_pred             CCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcE
Q psy3862         326 SGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADF  405 (671)
Q Consensus       326 s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~  405 (671)
                            ++|||+                                                                    
T Consensus       359 ------~iPVIa--------------------------------------------------------------------  364 (511)
T 3usb_A          359 ------GIPVIA--------------------------------------------------------------------  364 (511)
T ss_dssp             ------TCCEEE--------------------------------------------------------------------
T ss_pred             ------CCcEEE--------------------------------------------------------------------
Confidence                  478887                                                                    


Q ss_pred             EEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862         406 VMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKD  485 (671)
Q Consensus       406 i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~  485 (671)
                                                             +||+....++++++.+|||+|++|....+            
T Consensus       365 ---------------------------------------~GGI~~~~di~kala~GA~~V~vGs~~~~------------  393 (511)
T 3usb_A          365 ---------------------------------------DGGIKYSGDMVKALAAGAHVVMLGSMFAG------------  393 (511)
T ss_dssp             ---------------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTT------------
T ss_pred             ---------------------------------------eCCCCCHHHHHHHHHhCchhheecHHHhc------------
Confidence                                                   79998999999999999999999964444            


Q ss_pred             CeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         486 GKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       486 g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                                                                              ++|+|++.         +      
T Consensus       394 --------------------------------------------------------~~es~g~~---------~------  402 (511)
T 3usb_A          394 --------------------------------------------------------VAESPGET---------E------  402 (511)
T ss_dssp             --------------------------------------------------------BTTSSSCE---------E------
T ss_pred             --------------------------------------------------------CccCchhh---------h------
Confidence                                                                    34444442         1      


Q ss_pred             ccccccchhhhcccccccceeeccccccccccccccchhccc-cccccCCCceEecccccCHHHHHHHHHHHHhhhcccc
Q psy3862         566 LNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ-LNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYV  644 (671)
Q Consensus       566 ~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~-~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~  644 (671)
                                +++| +++|.||||+|..||. .++++|||.. .++++|||++++|||||+++++|++|.+|||++|+|+
T Consensus       403 ----------~~~g-~~~k~~~gm~s~~a~~-~~~~~r~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~~~~lr~~m~~~  470 (511)
T 3usb_A          403 ----------IYQG-RQFKVYRGMGSVGAME-KGSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYC  470 (511)
T ss_dssp             ----------ECSS-SEEEC-----------------------------------CBCCBCHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------hccC-eeeeeeeccccHHHHh-cccccchhccccccccCCCcEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence                      1234 4678999999999997 5678999864 3678999999999999999999999999999999999


Q ss_pred             CcccccccccccEEEEeccc
Q psy3862         645 GASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       645 Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      |+++|+||+++++|+|+|.+
T Consensus       471 G~~~i~~l~~~~~~~~~~~~  490 (511)
T 3usb_A          471 GAQDLEFLRENAQFIRMSGA  490 (511)
T ss_dssp             TCSBHHHHHHHCCEEECCHH
T ss_pred             CcccHHHHHhCCeEEEEccc
Confidence            99999999999999999964

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=100.00  E-value=1.3e-44  Score=389.12  Aligned_cols=338  Identities=67%  Similarity=1.092  Sum_probs=275.8

Q ss_pred             ccccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCH
Q psy3862          12 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTL   91 (671)
Q Consensus        12 ~~~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~   91 (671)
                      -|.....++||||+|+|+++.+.++++|||+|+|++++++++++++||++++|+++++.+||.|++++||+|++|.++++
T Consensus        13 ~~~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~s~   92 (351)
T 2c6q_A           13 GLVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHYSL   92 (351)
T ss_dssp             ------CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTCCH
T ss_pred             cccccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCCCH
Confidence            34455789999999999997765447999999999888889999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccH
Q psy3862          92 EEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTG  171 (671)
Q Consensus        92 Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~  171 (671)
                      |+|..+++++|....++.+..|.+.++.+++..+++..++.+++.++..+|++..+.+.++++++.+|...++++++.+.
T Consensus        93 e~~~~~i~~~p~~l~~v~~~~g~~~~~~~~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~  172 (351)
T 2c6q_A           93 VQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTG  172 (351)
T ss_dssp             HHHHHHHHHCGGGCTTEEEEECSSHHHHHHHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSH
T ss_pred             HHHHHHHhhCchhhheeEeecCCChHHHHHHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCH
Confidence            99998887777656667777777777788898898876677888888888888889999999998887777777888888


Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  251 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr  251 (671)
                      +.|+.++++|||+|                                                     .|+.|+|++|+||
T Consensus       173 e~A~~a~~aGaD~I-----------------------------------------------------~v~~g~G~~~~~r  199 (351)
T 2c6q_A          173 EMVEELILSGADII-----------------------------------------------------KVGIGPGSVCTTR  199 (351)
T ss_dssp             HHHHHHHHTTCSEE-----------------------------------------------------EECSSCSTTBCHH
T ss_pred             HHHHHHHHhCCCEE-----------------------------------------------------EECCCCCcCcCcc
Confidence            88888888887777                                                     6788899999999


Q ss_pred             eecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862         252 LKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ  331 (671)
Q Consensus       252 ~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~  331 (671)
                      ...|.|.|+++++.++++++++                                                         .
T Consensus       200 ~~~g~~~p~~~~l~~v~~~~~~---------------------------------------------------------~  222 (351)
T 2c6q_A          200 KKTGVGYPQLSAVMECADAAHG---------------------------------------------------------L  222 (351)
T ss_dssp             HHHCBCCCHHHHHHHHHHHHHH---------------------------------------------------------T
T ss_pred             ccCCCCccHHHHHHHHHHHHhh---------------------------------------------------------c
Confidence            9999999999999999988753                                                         2


Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGM  411 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~  411 (671)
                      ++|||+                                                                          
T Consensus       223 ~ipvIa--------------------------------------------------------------------------  228 (351)
T 2c6q_A          223 KGHIIS--------------------------------------------------------------------------  228 (351)
T ss_dssp             TCEEEE--------------------------------------------------------------------------
T ss_pred             CCcEEE--------------------------------------------------------------------------
Confidence            478887                                                                          


Q ss_pred             cccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEE
Q psy3862         412 FAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKL  491 (671)
Q Consensus       412 a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~  491 (671)
                                                       +||+....++++++.+|||+|++|...-++.+|+++.+..+      
T Consensus       229 ---------------------------------~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~------  269 (351)
T 2c6q_A          229 ---------------------------------DGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERD------  269 (351)
T ss_dssp             ---------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEET------
T ss_pred             ---------------------------------eCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhc------
Confidence                                             79998899999999999999999964444334444333222      


Q ss_pred             eeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccccccccc
Q psy3862         492 FYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND  571 (671)
Q Consensus       492 g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~  571 (671)
                                                                                                      
T Consensus       270 --------------------------------------------------------------------------------  269 (351)
T 2c6q_A          270 --------------------------------------------------------------------------------  269 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhcccccccceeecccccccccccc-ccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccc
Q psy3862         572 TVQDILGGLRSACTYVGASKLKELPRRA-TFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLK  650 (671)
Q Consensus       572 ~~~~~~~G~~~~k~y~Gm~s~~a~~~~~-~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~  650 (671)
                             | +++|.||||++..+|.+.+ +.+||      ..+||++.+||||||++++|.+|.++||++|+|+|+++|+
T Consensus       270 -------g-~~~k~~~g~~~~~a~~~~~g~~~~~------~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~  335 (351)
T 2c6q_A          270 -------G-KKYKLFYGMSSEMAMKKYAGGVAEY------RASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLK  335 (351)
T ss_dssp             -------T-EEEEEEECTTBHHHHHHHSSSCCTT------CCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGG
T ss_pred             -------C-eeeeeccccccHhhhhccccccccc------ccccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence                   3 2456777777776665432 23344      3579999999999999999999999999999999999999


Q ss_pred             ccccccEEEEeccccc
Q psy3862         651 ELPRRATFIRCTAQLN  666 (671)
Q Consensus       651 el~~~a~Fvrvt~q~n  666 (671)
                      ||++++.|||||+|+|
T Consensus       336 ~l~~~~~~v~~~~~~~  351 (351)
T 2c6q_A          336 ELSRRTTFIRVTQQVN  351 (351)
T ss_dssp             GHHHHCCEEEC-----
T ss_pred             HHhhCCcEEEEecCCC
Confidence            9999999999999999

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=100.00  E-value=6e-46  Score=404.12  Aligned_cols=322  Identities=35%  Similarity=0.580  Sum_probs=244.6

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ...+||||||+|+|+++++.| ++|||+|+||    +.+.+++||++++|+++++.+||+|+|++||||+||+|+++|+|
T Consensus         6 ~~~~~t~ddvll~P~~~~~~~-~~v~l~t~lt----~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~~e~~   80 (400)
T 3ffs_A            6 IGKGLTFEDILLVPNYSEVLP-REVSLETKLT----KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQ   80 (400)
T ss_dssp             EEEECCGGGEEECCCCBCSCG-GGCCCCEESS----SSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECSSSCHHHH
T ss_pred             cccCCCceeEEEecCCCccCH-HHccCccchh----cccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCCCCCHHHH
Confidence            356899999999999999987 7999999998    78999999999999999999999999999999999999999999


Q ss_pred             HHhhhc----------Cccc-------------------------------cc--ceEEecCCChhhHHHHHHHHHhCCC
Q psy3862          95 KAFAVQ----------NPDV-------------------------------IK--HVAVSSGISAKDLAGLKEILAALPE  131 (671)
Q Consensus        95 ~~~i~~----------~p~~-------------------------------~~--~~~v~~G~~~~d~~rl~~l~~a~~~  131 (671)
                      .+++++          .|..                               .+  .+.+.++..  +.++++.++++  +
T Consensus        81 ~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~--~~e~~~~lvea--G  156 (400)
T 3ffs_A           81 VNEVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVN--EIERAKLLVEA--G  156 (400)
T ss_dssp             HHHHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC---CHHHHHHHHH--T
T ss_pred             HHHHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCC--HHHHHHHHHHc--C
Confidence            887742          1111                               00  011222332  36788889998  7


Q ss_pred             ceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhh
Q psy3862         132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQF  211 (671)
Q Consensus       132 ~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~  211 (671)
                      ++++++|.++|++..+.+.++++++.+ ...++++++.|.+.++.|+++|||+|                          
T Consensus       157 vdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~g~V~t~e~A~~a~~aGAD~I--------------------------  209 (400)
T 3ffs_A          157 VDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGI--------------------------  209 (400)
T ss_dssp             CSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEEEEECSHHHHHHHHHTTCSEE--------------------------
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEeecCCHHHHHHHHHcCCCEE--------------------------
Confidence            899999999999988999999887766 34556667667777776666666666                          


Q ss_pred             ccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeec
Q psy3862         212 YSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIIN  291 (671)
Q Consensus       212 i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  291 (671)
                                                 +||++||++||||.+.++|.||++++.+|++++++                  
T Consensus       210 ---------------------------~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~------------------  244 (400)
T 3ffs_A          210 ---------------------------KVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASK------------------  244 (400)
T ss_dssp             ---------------------------EECC---------CCSCBCCCHHHHHHHHHHHHTT------------------
T ss_pred             ---------------------------EEeCCCCcCcccccccccchhHHHHHHHHHHHHHh------------------
Confidence                                       78999999999999999999999999999998863                  


Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                                                             .++|||+                                  
T Consensus       245 ---------------------------------------~~IPVIA----------------------------------  251 (400)
T 3ffs_A          245 ---------------------------------------FGIPIIA----------------------------------  251 (400)
T ss_dssp             ---------------------------------------TTCCEEE----------------------------------
T ss_pred             ---------------------------------------cCCCEEe----------------------------------
Confidence                                                   2588888                                  


Q ss_pred             HHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCc
Q psy3862         372 AFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSP  451 (671)
Q Consensus       372 ~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t  451 (671)
                                                                                               +||+...
T Consensus       252 -------------------------------------------------------------------------~GGI~~~  258 (400)
T 3ffs_A          252 -------------------------------------------------------------------------DGGIRYS  258 (400)
T ss_dssp             -------------------------------------------------------------------------ESCCCSH
T ss_pred             -------------------------------------------------------------------------cCCCCCH
Confidence                                                                                     7998888


Q ss_pred             hhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccc---------cCCceEeee
Q psy3862         452 GDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRA---------AEGKTVQVP  522 (671)
Q Consensus       452 ~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~---------~~G~~v~i~  522 (671)
                      .++++++.+|||+|++|....++.+|+++.+..+|.++|.|+||+|+.||.+  +..++|+.         ++|..+.++
T Consensus       259 ~di~kalalGAd~V~vGt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~--~~~~ry~~~~~~~~~~~~eG~~~~v~  336 (400)
T 3ffs_A          259 GDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS--GSGDRYFQEKRPENKMVPEGIEGRVK  336 (400)
T ss_dssp             HHHHHHHTTTCSEEEECGGGTTBTTSSCCEEESSSSEEEC-------------------------------------CEE
T ss_pred             HHHHHHHHcCCCEEEEChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhc--cccchhhcccccccccCCCCcEEecC
Confidence            9999999999999999999999999999999999999999999999999964  34556653         667777799


Q ss_pred             cCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         523 YRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       523 ~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      |.|++.+.+..|+|++++++.++|+..++|++.+++|+.++..
T Consensus       337 ~~g~~~~~~~~~~~glr~~~~y~G~~~i~el~~~~~f~~~t~~  379 (400)
T 3ffs_A          337 YKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEITTS  379 (400)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCEEECCC-
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcCcccHHHHHhCCeEEEEccc
Confidence            9999999999999999999999999999999999999998765

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=100.00  E-value=4.4e-46  Score=418.11  Aligned_cols=324  Identities=20%  Similarity=0.222  Sum_probs=252.7

Q ss_pred             eccccCCCceeeeecCCCc--cCCCCcccceeeee-ec--cCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccC
Q psy3862         290 INDIKLDFKDVMLRPKRST--LKSRSEVDITRTFT-FR--NSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY  364 (671)
Q Consensus       290 ~~~~~l~fdDVll~P~rst--~~sr~eVdl~~~l~-~~--~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~  364 (671)
                      .+..+||||||||+|++|+  +.| +||||+++|+ |+  ..+++.+.+|++||+||||++.+||++|++.||+|+||++
T Consensus         5 ~~~~~~t~~d~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~iP~vsa~m~~vt~~~la~~la~~gg~G~I~~~   83 (503)
T 1me8_A            5 YNEPCHTFNEYLLIPGLSTVDCIP-SNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFGS   83 (503)
T ss_dssp             CSSCCCCGGGEEECCCCCCTTCCG-GGCBCCEECSCEETTCCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECCS
T ss_pred             ccCCCcccccEEEcCCCCCCccCC-CcceeeeeccccccccccceeecCceEeccchhhhHHHHHHHHHhCCCcceeeCC
Confidence            4567999999999999999  887 8999999998 43  2447999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCccc-----------------------------------------------------c----------
Q psy3862         365 YTLEEWKAFAVQNPDV-----------------------------------------------------I----------  381 (671)
Q Consensus       365 ~~~e~~~~~v~~~~~~-----------------------------------------------------~----------  381 (671)
                      .++|++.+++.+++..                                                     +          
T Consensus        84 ~~~e~~~~~v~~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V  163 (503)
T 1me8_A           84 QSIESQAAMVHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKV  163 (503)
T ss_dssp             SCHHHHHHHHHHHHTTTC--------------------------------------------------------------
T ss_pred             CCHHHHHHHHhhhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcH
Confidence            9999987766432100                                                     0          


Q ss_pred             ----------------------------------c--------------------------------ceeeecccCh---
Q psy3862         382 ----------------------------------K--------------------------------HVADGGCTSP---  392 (671)
Q Consensus       382 ----------------------------------~--------------------------------~v~~~~~~~~---  392 (671)
                                                        +                                .+.....++.   
T Consensus       164 ~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~~d~~~~l~v~a~v~~~~~  243 (503)
T 1me8_A          164 SDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVGAGINTRDF  243 (503)
T ss_dssp             ----------------------------------------------------------CCCCBCTTSCBCCEEEECSSSH
T ss_pred             HHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccchhccccccccccccCchhH
Confidence                                              0                                0000000111   


Q ss_pred             -hhHHHHHHcCCcEEEEcccccccccccccccccccccccc-ccccccccCceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         393 -GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPL-VGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       393 -~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                       +.+..++++|+|++++| +++||+....+.++.++..+|. +         .++.|++.+.+.++ +.++|||+|+||+
T Consensus       244 ~e~~~~l~e~gv~~l~Vd-~~~g~~~~~~~~i~~lk~~~~~~~---------~Vi~G~V~t~~~a~~l~~aGad~I~Vg~  313 (503)
T 1me8_A          244 RERVPALVEAGADVLCID-SSDGFSEWQKITIGWIREKYGDKV---------KVGAGNIVDGEGFRYLADAGADFIKIGI  313 (503)
T ss_dssp             HHHHHHHHHHTCSEEEEC-CSCCCSHHHHHHHHHHHHHHGGGS---------CEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHHHHHhhhccceEEe-cccCcccchhhHHHHHHHhCCCCc---------eEeeccccCHHHHHHHHHhCCCeEEecc
Confidence             22345578899999999 8899987777766666666553 3         24567789988888 6799999999995


Q ss_pred             cccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEe------eecCCCHHHHHH-----HHHhhH
Q psy3862         470 MFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQ------VPYRGDVNDTVQ-----DILGGL  538 (671)
Q Consensus       470 ~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~------i~~~Gdi~kAia-----vMlG~~  538 (671)
                       |+| +.|+||.+        .++|.||++++.+++.++.+|..+.|+.++      |++++|++|||+     ||+|++
T Consensus       314 -~~g-~~~~~r~~--------~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~  383 (503)
T 1me8_A          314 -GGG-SICITREQ--------KGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRY  383 (503)
T ss_dssp             -SCS-TTCCSTTT--------TCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             -cCC-cCcccccc--------cCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence             999 89999864        478999999999998777766433443333      799999999999     999999


Q ss_pred             hHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchh-cc-ccccccCCCc
Q psy3862         539 RSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC-TA-QLNNVAAEGK  616 (671)
Q Consensus       539 ~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~-~~-~~~~~~~eG~  616 (671)
                      |++++|+|++.         +                ..+| +++|.||||+|..+|..    +|| +. ..++.+|||+
T Consensus       384 ~~~~~E~~~~~---------~----------------~~~g-~~~k~~~g~~s~~~~~~----~~~~~~~~~~~~~~eg~  433 (503)
T 1me8_A          384 FARFEESPTRK---------V----------------TING-SVMKEYWGEGSSRARNW----QRYDLGGKQKLSFEEGV  433 (503)
T ss_dssp             HHTBTTSSSCE---------E----------------EETT-EEEEEEECTTSHHHHCC------------------CCC
T ss_pred             hhccccCCCce---------E----------------EECC-eEEEeecCccchhHhhc----cccccccccceecccce
Confidence            99999998883         1                2346 68899999999998863    666 32 2467899999


Q ss_pred             eEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         617 TVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       617 ~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      +++|||||++++++++|.++||++|+|+|+++|+||+++++|+|+|.+
T Consensus       434 ~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~  481 (503)
T 1me8_A          434 DSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSSV  481 (503)
T ss_dssp             EEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEEECCTT
T ss_pred             eEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhCCCEEEEccc
Confidence            999999999999999999999999999999999999999999999864

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=100.00  E-value=2.4e-42  Score=371.06  Aligned_cols=319  Identities=37%  Similarity=0.643  Sum_probs=277.4

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcce--eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVD--ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE   93 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vd--lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Ee   93 (671)
                      ..+|+||||+|+|+.++..|+++||  ++|+|     .++++++||+++||+++++.+||+|++++||+|+||+|+++|+
T Consensus         5 ~~~~~fddv~l~P~~~~~~~r~~vd~~~~t~l-----~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee   79 (361)
T 3r2g_A            5 DQAITFDDVLLVPSYNHHESRRVVETTSTDRL-----GKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEE   79 (361)
T ss_dssp             -CCCCGGGEEECCCCCCSCTTCCCCCCEECTT-----SSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHH
T ss_pred             ccccccceEEEECCCCCCCccccccceeeEEE-----CCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHH
Confidence            4789999999999999998867865  55577     5889999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHH
Q psy3862          94 WKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEM  173 (671)
Q Consensus        94 q~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~  173 (671)
                      +.+.+++..   ..+..+.+......++++.++++  +++++++|.++|++..+.+.++++|+.+|...+++|++.|.+.
T Consensus        80 ~~~~i~~~~---~~~~~~~g~~~~~~e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~  154 (361)
T 3r2g_A           80 NIQEFKKCK---GPVFVSVGCTENELQRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAG  154 (361)
T ss_dssp             HHHHHHTCC---SCCBEEECSSHHHHHHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHH
T ss_pred             HHHHHhhcc---eEEEEEcCCCHHHHHHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHH
Confidence            998886532   23444556666667888899998  7899999999999988889999998888777777777777777


Q ss_pred             HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCcccccee
Q psy3862         174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  253 (671)
Q Consensus       174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V  253 (671)
                      ++.|+++|||+|                                                     +||++||++|+||.+
T Consensus       155 A~~a~~aGaD~I-----------------------------------------------------~Vg~g~G~~~~tr~~  181 (361)
T 3r2g_A          155 ADYLASCGADII-----------------------------------------------------KAGIGGGSVCSTRIK  181 (361)
T ss_dssp             HHHHHHTTCSEE-----------------------------------------------------EECCSSSSCHHHHHH
T ss_pred             HHHHHHcCCCEE-----------------------------------------------------EEcCCCCcCcccccc
Confidence            777777777766                                                     889999999999999


Q ss_pred             cccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862         254 TGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV  333 (671)
Q Consensus       254 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i  333 (671)
                      .|+|.||+++|.+|++++                                                            . 
T Consensus       182 ~g~g~p~l~aI~~~~~~~------------------------------------------------------------~-  200 (361)
T 3r2g_A          182 TGFGVPMLTCIQDCSRAD------------------------------------------------------------R-  200 (361)
T ss_dssp             HCCCCCHHHHHHHHTTSS------------------------------------------------------------S-
T ss_pred             CCccHHHHHHHHHHHHhC------------------------------------------------------------C-
Confidence            999999999999998532                                                            1 


Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA  413 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~  413 (671)
                      |||+                                                                            
T Consensus       201 PVIA----------------------------------------------------------------------------  204 (361)
T 3r2g_A          201 SIVA----------------------------------------------------------------------------  204 (361)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             CEEE----------------------------------------------------------------------------
Confidence            7777                                                                            


Q ss_pred             cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEe-CCeEEEEe
Q psy3862         414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEK-DGKKVKLF  492 (671)
Q Consensus       414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~-~g~~~k~g  492 (671)
                                                     +||+....++++++.+|||+|++|....++.+|+++.+.. +|.++|.|
T Consensus       205 -------------------------------dGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y  253 (361)
T 3r2g_A          205 -------------------------------DGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRY  253 (361)
T ss_dssp             -------------------------------ESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEE
T ss_pred             -------------------------------ECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEE
Confidence                                           7998888999999999999999999999999999999998 99999999


Q ss_pred             eCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccc
Q psy3862         493 YGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  565 (671)
Q Consensus       493 ~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~  565 (671)
                      +||+|.++.....+...+|..++|..+.++|.|++.+.+..|+|++++++.++|+..++|++.+++|+.++.+
T Consensus       254 ~Gm~s~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~~~~~~~~~~  326 (361)
T 3r2g_A          254 RGMASREAQEAFLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVTQA  326 (361)
T ss_dssp             SCCHHHHHHHHHTTCCSTTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHTCCEEECCST
T ss_pred             ecCCCcchhhhhhccccccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhCCeEEEEccc
Confidence            9999976655444444566678999999999999999999999999999999999999999999999998775

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=100.00  E-value=5e-40  Score=367.57  Aligned_cols=374  Identities=32%  Similarity=0.507  Sum_probs=261.6

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+||||||+|+|+++++.| ++||++++||    +.+.+.+||++++|+++++.+++.++++.||+|+||+|+++|++.
T Consensus        12 ~~~~~~dd~~~~p~~~~~~~-~~v~l~t~lt----~~l~l~~PIi~a~m~~vt~~ela~ava~~GglG~i~~~~~~e~~~   86 (486)
T 2cu0_A           12 IKGYTFDDVLLIPQATEVEP-KDVDVSTRIT----PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQV   86 (486)
T ss_dssp             CCCCCGGGEEECCCCCSSCS-TTCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHH
T ss_pred             CCCcCccCEEEcCCcCCCCc-ceEEEEeeec----CCcccccceEEccceeecHHHHHHHHHhcCCceeecCCCCHHHHH
Confidence            47999999999999999987 6999999998    789999999999999999999999999999999999999998876


Q ss_pred             Hhhh---cCcc--cccceEEecCCChhhH-----------------HH-----------------HHHHHHhCC-----C
Q psy3862          96 AFAV---QNPD--VIKHVAVSSGISAKDL-----------------AG-----------------LKEILAALP-----E  131 (671)
Q Consensus        96 ~~i~---~~p~--~~~~~~v~~G~~~~d~-----------------~r-----------------l~~l~~a~~-----~  131 (671)
                      +++.   +..+  ....+.+....+..+.                 ++                 +.++|...+     +
T Consensus        87 ~~I~~v~~~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~~~~~~v~~im~~~~~~v~~~  166 (486)
T 2cu0_A           87 EQVKRVKRAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAREGKLVKELMTKEVITVPES  166 (486)
T ss_dssp             HHHHHHHTCC----------------------------------------------------------------------
T ss_pred             HHHHhhcchhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhccCCCCCHHHHccCCCeEECCc
Confidence            6553   1111  0011111000000000                 00                 111111000     0


Q ss_pred             --------------c-eEEEeeccCCCChHHHHHHHHHHH--hCCC------ce-EEEEEecc--HHHHHHHHHCCCcEE
Q psy3862         132 --------------I-EYICLDVANGYTQTFVDFVRRIRE--MYPK------HV-IIAGNVVT--GEMVEELILSGADVI  185 (671)
Q Consensus       132 --------------~-d~Ivld~a~G~~~~~~~~ik~lr~--~~P~------~~-li~g~v~t--~e~a~~Li~AGaD~I  185 (671)
                                    . .+.++|.. |....++. .+++.+  .+|.      .. ++.+.+..  .+++..++++|+|++
T Consensus       167 ~~l~eal~~m~~~~~~~lpVVde~-g~lvGiiT-~~Dil~~~~~~~~~~~~~g~~~v~~~~~~~~~~~a~~l~~~gvd~l  244 (486)
T 2cu0_A          167 IEVEEALKIMIENRIDRLPVVDER-GKLVGLIT-MSDLVARKKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVI  244 (486)
T ss_dssp             ------------------------------------------CCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEE
T ss_pred             CcHHHHHHHHHHcCCCEEEEEecC-CeEEEEEE-HHHHHHhhhccccccccCCceeecceechhhHHHHHHHHHhcCCce
Confidence                          0 00111110 00000000 111111  1221      12 23333322  578899999999999


Q ss_pred             EECcCCCceE--EE---EecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc
Q psy3862         186 KVGIGPGSVC--TT---RLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP  259 (671)
Q Consensus       186 vVdga~G~~~--~t---~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~  259 (671)
                      ++|+++||..  ..   .+++.+          .+| ++|||.+.+.+++|+  |||+|+||+|+||+|+||.++|+|.|
T Consensus       245 vvdta~G~~~~~L~~I~~l~~~~----------~vpvi~k~v~~~~~a~~l~--G~d~v~vg~g~g~~~~~r~~~~~g~~  312 (486)
T 2cu0_A          245 VVDTAHAHNLKAIKSMKEMRQKV----------DADFIVGNIANPKAVDDLT--FADAVKVGIGPGSICTTRIVAGVGVP  312 (486)
T ss_dssp             EEECSCCCCHHHHHHHHHHHHTC----------CSEEEEEEECCHHHHTTCT--TSSEEEECSSCSTTBCHHHHTCCCCC
T ss_pred             EEEecCCcEeehhhHHHHHHHHh----------CCccccCCcCCHHHHHHhh--CCCeEEEeeeeccceeeeEEeecCcc
Confidence            9999999851  11   111111          245 799999999999998  99999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecC
Q psy3862         260 QFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAAN  339 (671)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~  339 (671)
                      |++++.+|++.+++                                                         .++|||+  
T Consensus       313 ~~~~l~~~~~~~~~---------------------------------------------------------~~vpVia--  333 (486)
T 2cu0_A          313 QITAVAMVADRAQE---------------------------------------------------------YGLYVIA--  333 (486)
T ss_dssp             HHHHHHHHHHHHHH---------------------------------------------------------HTCEEEE--
T ss_pred             hHHHHHHHHHHHHH---------------------------------------------------------cCCcEEe--
Confidence            99999999988764                                                         2578887  


Q ss_pred             CCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccc
Q psy3862         340 MDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSG  419 (671)
Q Consensus       340 MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~  419 (671)
                                                                                                      
T Consensus       334 --------------------------------------------------------------------------------  333 (486)
T 2cu0_A          334 --------------------------------------------------------------------------------  333 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHH
Q psy3862         420 GELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTT  499 (671)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~t  499 (671)
                                               +||+....++++++.+|||+|++|....++.+|+++.+..+|.++|.++|+++..
T Consensus       334 -------------------------~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~  388 (486)
T 2cu0_A          334 -------------------------DGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLG  388 (486)
T ss_dssp             -------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHH
T ss_pred             -------------------------cCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHH
Confidence                                     7999999999999999999999998777777888887777777888888887777


Q ss_pred             HHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhccc
Q psy3862         500 AMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGG  579 (671)
Q Consensus       500 Ai~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G  579 (671)
                      |+.+.  ...+|+                           .                                      |
T Consensus       389 a~~~~--~~~r~~---------------------------~--------------------------------------g  401 (486)
T 2cu0_A          389 AMMKG--GAERYY---------------------------Q--------------------------------------G  401 (486)
T ss_dssp             HHTC----------------------------------------------------------------------------
T ss_pred             HHhcc--cccccc---------------------------c--------------------------------------c
Confidence            76531  111110                           0                                      0


Q ss_pred             ccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEE
Q psy3862         580 LRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI  659 (671)
Q Consensus       580 ~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fv  659 (671)
                               .              + ...+..++||++..+||+|++.+++++|.++||++|+|+|+.+++||++++.|+
T Consensus       402 ---------~--------------~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~~~~~  457 (486)
T 2cu0_A          402 ---------G--------------Y-MKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFV  457 (486)
T ss_dssp             ------------------------C-CCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEE
T ss_pred             ---------c--------------c-cccccccccceEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhhCCEE
Confidence                     0              0 011345799999999999999999999999999999999999999999999999


Q ss_pred             Eecc
Q psy3862         660 RCTA  663 (671)
Q Consensus       660 rvt~  663 (671)
                      |+|.
T Consensus       458 ~~~~  461 (486)
T 2cu0_A          458 IITH  461 (486)
T ss_dssp             ECCH
T ss_pred             EEcc
Confidence            9985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=100.00  E-value=4.9e-38  Score=351.35  Aligned_cols=375  Identities=34%  Similarity=0.492  Sum_probs=269.2

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+||||||+|+|+++.+.| ++||++++|+    +.+.+++||++++|+++++.+|+.++++.||+|+||.++++|++.
T Consensus         9 ~~~~~~~d~~~~p~~~~~~p-~~v~~~t~lt----~~l~~~~Piv~a~M~~vt~~eLa~av~~~Gg~G~i~~~~~~e~~~   83 (491)
T 1zfj_A            9 KKGYTFDDVLLIPAESHVLP-NEVDLKTKLA----DNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQA   83 (491)
T ss_dssp             CCCCCGGGEEECCCCCCSCG-GGCCCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             ccCCChhhEEeccCcCCcCc-cccccchhhh----hcceecCceEecCchhccHHHHHHHHHHcCCceEEeCCCCHHHHH
Confidence            37999999999999999988 7999999998    789999999999999999999999999999999999999998876


Q ss_pred             HhhhcC---cc--cccceEEecCCCh------------------------------------------------------
Q psy3862          96 AFAVQN---PD--VIKHVAVSSGISA------------------------------------------------------  116 (671)
Q Consensus        96 ~~i~~~---p~--~~~~~~v~~G~~~------------------------------------------------------  116 (671)
                      +++.+.   .+  ...++.+....+.                                                      
T Consensus        84 ~~i~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~  163 (491)
T 1zfj_A           84 EEVRKVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHL  163 (491)
T ss_dssp             HHHHHHHHHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCC
T ss_pred             HHHHHHhhHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhccCCCcHHHHcCCCCC
Confidence            655310   00  0001111100000                                                      


Q ss_pred             ------hhHHHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCC----Cc-eEEEEEec----cHHHHHHHHH
Q psy3862         117 ------KDLAGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYP----KH-VIIAGNVV----TGEMVEELIL  179 (671)
Q Consensus       117 ------~d~~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P----~~-~li~g~v~----t~e~a~~Li~  179 (671)
                            ..++.+.+++....-....++|..+..  .-...+.++.+.+..+    .. ..+++.+.    +.++++.|++
T Consensus       164 ~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~  243 (491)
T 1zfj_A          164 VTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFE  243 (491)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHH
Confidence                  012222222222111122333322110  0111222222221000    11 12333332    3689999999


Q ss_pred             CCCcEEEECcCCCceE-----EEEecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEEEcccCCCcccccee
Q psy3862         180 SGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  253 (671)
Q Consensus       180 AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V  253 (671)
                      +|+|+|++++++||..     +.++++.+|         .+| ++||+.|.+.+++++++|||+|.||+|+||+|+||.+
T Consensus       244 ~G~d~ivi~~a~g~~~~~~~~i~~l~~~~p---------~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~  314 (491)
T 1zfj_A          244 AGADAIVIDTAHGHSAGVLRKIAEIRAHFP---------NRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVV  314 (491)
T ss_dssp             HTCSEEEECCSCTTCHHHHHHHHHHHHHCS---------SSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHH
T ss_pred             cCCCeEEEeeecCcchhHHHHHHHHHHHCC---------CCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeee
Confidence            9999999999988741     111222122         234 6999999999999999999999999999999999999


Q ss_pred             cccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862         254 TGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV  333 (671)
Q Consensus       254 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i  333 (671)
                      .+.|.|+++++.+++.+++.                                                         .++
T Consensus       315 ~~~~~p~~~~l~~~~~~~~~---------------------------------------------------------~~i  337 (491)
T 1zfj_A          315 AGVGVPQVTAIYDAAAVARE---------------------------------------------------------YGK  337 (491)
T ss_dssp             TCCCCCHHHHHHHHHHHHHH---------------------------------------------------------TTC
T ss_pred             cCCCCCcHHHHHHHHHHHhh---------------------------------------------------------cCC
Confidence            99999999999999988764                                                         247


Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA  413 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~  413 (671)
                      |||+                                                                            
T Consensus       338 pvia----------------------------------------------------------------------------  341 (491)
T 1zfj_A          338 TIIA----------------------------------------------------------------------------  341 (491)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             CEEe----------------------------------------------------------------------------
Confidence            8887                                                                            


Q ss_pred             cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862         414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~  493 (671)
                                                     +||+....++++++.+|||+|++|...-++.+++++.+...|.++|.++
T Consensus       342 -------------------------------~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~  390 (491)
T 1zfj_A          342 -------------------------------DGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYR  390 (491)
T ss_dssp             -------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEE
T ss_pred             -------------------------------eCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEe
Confidence                                           7998889999999999999999998666656677776666666677777


Q ss_pred             CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccch
Q psy3862         494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTV  573 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~  573 (671)
                      |+++..|+.+                                                                      
T Consensus       391 g~~~~~a~~~----------------------------------------------------------------------  400 (491)
T 1zfj_A          391 GMGSIAAMKK----------------------------------------------------------------------  400 (491)
T ss_dssp             CTTSHHHHCC----------------------------------------------------------------------
T ss_pred             cccCHHHHhc----------------------------------------------------------------------
Confidence            7666666542                                                                      


Q ss_pred             hhhcccccccceeeccccccccccccccchhcc----ccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccc
Q psy3862         574 QDILGGLRSACTYVGASKLKELPRRATFIRCTA----QLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL  649 (671)
Q Consensus       574 ~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~----~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l  649 (671)
                                               .+..||+.    ..+...+||+++.++|+|++.+++.+|.++||++|+|+|+.++
T Consensus       401 -------------------------~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~  455 (491)
T 1zfj_A          401 -------------------------GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDI  455 (491)
T ss_dssp             ---------------------------------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             -------------------------cccccccccccccccccCcCcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccH
Confidence                                     11122221    1134579999999999999999999999999999999999999


Q ss_pred             cccccccEEEEecc
Q psy3862         650 KELPRRATFIRCTA  663 (671)
Q Consensus       650 ~el~~~a~Fvrvt~  663 (671)
                      +||++++.|+|+|+
T Consensus       456 ~~l~~~~~~~~~~~  469 (491)
T 1zfj_A          456 QELHENAQFVEMSG  469 (491)
T ss_dssp             HHHHHHCCEEECCH
T ss_pred             HHHHhcCcEEEEcc
Confidence            99999999999974

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=100.00  E-value=1e-37  Score=350.18  Aligned_cols=382  Identities=25%  Similarity=0.378  Sum_probs=266.4

Q ss_pred             cccccCCCCCceEEecCCcC--CCCCCcceeeeeeec-c--cCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec
Q psy3862          13 IINDIKLDFKDVMLRPKRST--LKSRSEVDITRTFTF-R--NSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK   87 (671)
Q Consensus        13 ~~~~~~l~fdDv~lvP~~~~--~~~~~~Vdlst~lt~-r--~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~   87 (671)
                      ++++.+||||||+|+|++++  +.| ++|||+|+||+ |  -..++.+.+|+++++|+++++.+||.+|++.||+|+||+
T Consensus         4 ~~~~~~~t~~d~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~iP~vsa~m~~vt~~~la~~la~~gg~G~I~~   82 (503)
T 1me8_A            4 YYNEPCHTFNEYLLIPGLSTVDCIP-SNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFG   82 (503)
T ss_dssp             CCSSCCCCGGGEEECCCCCCTTCCG-GGCBCCEECSCEETTCCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECC
T ss_pred             cccCCCcccccEEEcCCCCCCccCC-CcceeeeeccccccccccceeecCceEeccchhhhHHHHHHHHHhCCCcceeeC
Confidence            34567999999999999999  887 79999999981 0  011799999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhc---Ccc--cccceEEec--------------------------------C-CChhhHH--------H
Q psy3862          88 YYTLEEWKAFAVQ---NPD--VIKHVAVSS--------------------------------G-ISAKDLA--------G  121 (671)
Q Consensus        88 n~~~Eeq~~~i~~---~p~--~~~~~~v~~--------------------------------G-~~~~d~~--------r  121 (671)
                      |+++|++.+++.+   ...  ...++.+..                                | ++..|+.        .
T Consensus        83 ~~~~e~~~~~v~~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~  162 (503)
T 1me8_A           83 SQSIESQAAMVHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETK  162 (503)
T ss_dssp             SSCHHHHHHHHHHHHTTTC-------------------------------------------------------------
T ss_pred             CCCHHHHHHHHhhhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCc
Confidence            9999988766531   100  000110100                                1 0111111        1


Q ss_pred             HHHHHHhC--C-----Cc---------------eEEEeeccCCCChHHHHHHHHHHH--hCCC------ceEEE-EEec-
Q psy3862         122 LKEILAAL--P-----EI---------------EYICLDVANGYTQTFVDFVRRIRE--MYPK------HVIIA-GNVV-  169 (671)
Q Consensus       122 l~~l~~a~--~-----~~---------------d~Ivld~a~G~~~~~~~~ik~lr~--~~P~------~~li~-g~v~-  169 (671)
                      +.++|...  +     +.               ...++|.. |....++. .+++.+  .+|.      ..++. .++. 
T Consensus       163 V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-g~lvGiIT-~~Dil~~~~~~~~~~d~~~~l~v~a~v~~  240 (503)
T 1me8_A          163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-QHLRYIVF-RKDYDRSQVCHNELVDSQKRYLVGAGINT  240 (503)
T ss_dssp             -------------------------------------------------------------CCCCBCTTSCBCCEEEECS
T ss_pred             HHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEE-ecHHHHhhhcccchhccccccccccccCc
Confidence            12222210  0     00               00111110 11111110 112211  1121      11222 2322 


Q ss_pred             --cHHHHHHHHHCCCcEEEECcCCCceE-----EEEecccCCcchhhhhccc-cC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         170 --TGEMVEELILSGADVIKVGIGPGSVC-----TTRLKNKTSDFFLIQFYSC-IP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       170 --t~e~a~~Li~AGaD~IvVdga~G~~~-----~t~v~~~~~~~~~i~~i~~-~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                        ..+.++.|+++|+|++++|.++|+..     +..+++.+|         . +| ++|||.|.+.++.|+++|||+++|
T Consensus       241 ~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~---------~~~~Vi~G~V~t~~~a~~l~~aGad~I~V  311 (503)
T 1me8_A          241 RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYG---------DKVKVGAGNIVDGEGFRYLADAGADFIKI  311 (503)
T ss_dssp             SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHG---------GGSCEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred             hhHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCC---------CCceEeeccccCHHHHHHHHHhCCCeEEe
Confidence              25678899999999999999998741     111221111         2 44 689999999999999999999999


Q ss_pred             cccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceee
Q psy3862         241 GIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRT  320 (671)
Q Consensus       241 G~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~  320 (671)
                      |+||||+||||.++|+|.||++++.+|+++++++                                              
T Consensus       312 g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~----------------------------------------------  345 (503)
T 1me8_A          312 GIGGGSICITREQKGIGRGQATAVIDVVAERNKY----------------------------------------------  345 (503)
T ss_dssp             CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred             cccCCcCcccccccCCCCchHHHHHHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999998642                                              


Q ss_pred             eeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHH
Q psy3862         321 FTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMG  400 (671)
Q Consensus       321 l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~  400 (671)
                        +.   .+..++|||+                                                               
T Consensus       346 --~~---~~~~~ipvia---------------------------------------------------------------  357 (503)
T 1me8_A          346 --FE---ETGIYIPVCS---------------------------------------------------------------  357 (503)
T ss_dssp             --HH---HHSEECCEEE---------------------------------------------------------------
T ss_pred             --hh---hcCCCceEEE---------------------------------------------------------------
Confidence              00   0012588888                                                               


Q ss_pred             cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCc
Q psy3862         401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                                                                  +||+....++++++.+|||+|++|....++.+|+++
T Consensus       358 --------------------------------------------~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~  393 (503)
T 1me8_A          358 --------------------------------------------DGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTR  393 (503)
T ss_dssp             --------------------------------------------ESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSC
T ss_pred             --------------------------------------------eCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCc
Confidence                                                        799999999999999999999999888898999999


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHh----hccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDK----HAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRR  556 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~----~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~  556 (671)
                      .+..+|.++|.+||+++..|+..    +.+ ..++..++|....++|.|.+.+.+..+++++.+++.++|...++|+..+
T Consensus       394 ~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~-~~~~~~~eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~  472 (503)
T 1me8_A          394 KVTINGSVMKEYWGEGSSRARNWQRYDLGG-KQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK  472 (503)
T ss_dssp             EEEETTEEEEEEECTTSHHHHCC---------------CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             eEEECCeEEEeecCccchhHhhcccccccc-ccceecccceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhC
Confidence            99999999999999999999842    111 1244568898888999999999999999999999999999999999988


Q ss_pred             ceEEEeccc
Q psy3862         557 ATFIRCTAQ  565 (671)
Q Consensus       557 a~fv~~~~~  565 (671)
                      +.|+.++..
T Consensus       473 ~~~~~~~~~  481 (503)
T 1me8_A          473 AKITLVSSV  481 (503)
T ss_dssp             CCEEECCTT
T ss_pred             CCEEEEccc
Confidence            889987654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=100.00  E-value=2.4e-36  Score=338.11  Aligned_cols=373  Identities=36%  Similarity=0.590  Sum_probs=244.5

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+||||||+|+|+++.+.|. +||++++||    +.+.+.+|+++++|+++++..||.++++.||+|+||+++++|++.
T Consensus        14 ~~~~~~~dvll~p~~s~~~p~-~v~~~~eLt----~~~~l~iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~~e~~~   88 (494)
T 1vrd_A           14 KEALTFDDVLLVPQYSEVLPK-DVKIDTRLT----RQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQA   88 (494)
T ss_dssp             CCCCCGGGEEECCCCCCCCGG-GSCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHH
T ss_pred             ccccccccEEeccccccCCCC-ceEEEehhh----CCCccCceeEecchHHHhHHHHHHHHHHcCCceEEecCCChHHHH
Confidence            468999999999999999986 999999998    789999999999999999999999999999999999999999886


Q ss_pred             Hhhhc---Cccc--ccceEEe-----------------------------cC-CChhhHH-------HHHHHHHh--CC-
Q psy3862          96 AFAVQ---NPDV--IKHVAVS-----------------------------SG-ISAKDLA-------GLKEILAA--LP-  130 (671)
Q Consensus        96 ~~i~~---~p~~--~~~~~v~-----------------------------~G-~~~~d~~-------rl~~l~~a--~~-  130 (671)
                      +++.+   ..+.  ..++.+.                             .| ++..|+.       .+.++|..  .+ 
T Consensus        89 ~~v~~v~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~  168 (494)
T 1vrd_A           89 RQVSIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKKIKDLMTPREKLI  168 (494)
T ss_dssp             HHHHHHHTC-----------------------------------------------------------------------
T ss_pred             HHHHhhhhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcCCCCcHHHHhCCCCCCe
Confidence            66531   1110  0001000                             01 1111111       11222221  00 


Q ss_pred             ----C--------------ce-EEEeeccCCCChHHH---HHHHHHHHhCCC-------ceEEEEEecc----HHHHHHH
Q psy3862         131 ----E--------------IE-YICLDVANGYTQTFV---DFVRRIREMYPK-------HVIIAGNVVT----GEMVEEL  177 (671)
Q Consensus       131 ----~--------------~d-~Ivld~a~G~~~~~~---~~ik~lr~~~P~-------~~li~g~v~t----~e~a~~L  177 (671)
                          +              .. ..++|. ++....++   +.++.+  .+|.       -..+++++.+    .++++.|
T Consensus       169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~--~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l  245 (494)
T 1vrd_A          169 VAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVI--EHPNAARDEKGRLLVGAAVGTSPETMERVEKL  245 (494)
T ss_dssp             -----------------------------------------CHHHH--TCTTCCBCTTSCBCCEEEECSSTTHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhh--ccccccccchhhhccccccCcCHhHHHHHHHH
Confidence                0              00 011110 01100111   111111  1232       1234555544    6899999


Q ss_pred             HHCCCcEEEECcCCCce-----EEEEecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEEEcccCCCccccc
Q psy3862         178 ILSGADVIKVGIGPGSV-----CTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  251 (671)
Q Consensus       178 i~AGaD~IvVdga~G~~-----~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr  251 (671)
                      +++|+|+|.++.++|+.     .+.++++.+|.         +| +.||+.|.+.++.|.++|||+|.||.++|++|+|+
T Consensus       246 ~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~---------~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~  316 (494)
T 1vrd_A          246 VKAGVDVIVIDTAHGHSRRVIETLEMIKADYPD---------LPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTR  316 (494)
T ss_dssp             HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTT---------SCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHH
T ss_pred             HHhCCCEEEEEecCCchHHHHHHHHHHHHHCCC---------ceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCcccccc
Confidence            99999999999998863     11122222222         34 57999999999999999999999999999999999


Q ss_pred             eecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceee
Q psy3862         252 LKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQ  331 (671)
Q Consensus       252 ~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~  331 (671)
                      ...+.|.|+++++.++++++++                                                         .
T Consensus       317 ~~~~~g~p~~~~l~~v~~~~~~---------------------------------------------------------~  339 (494)
T 1vrd_A          317 VVAGVGVPQLTAVMECSEVARK---------------------------------------------------------Y  339 (494)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHHT---------------------------------------------------------T
T ss_pred             ccCCCCccHHHHHHHHHHHHhh---------------------------------------------------------c
Confidence            9999999999999999988753                                                         2


Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccc
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGM  411 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~  411 (671)
                      ++|||+                                                                          
T Consensus       340 ~ipvia--------------------------------------------------------------------------  345 (494)
T 1vrd_A          340 DVPIIA--------------------------------------------------------------------------  345 (494)
T ss_dssp             TCCEEE--------------------------------------------------------------------------
T ss_pred             CCCEEE--------------------------------------------------------------------------
Confidence            578887                                                                          


Q ss_pred             cccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEE
Q psy3862         412 FAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKL  491 (671)
Q Consensus       412 a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~  491 (671)
                                                       +||+....++++++.+|||+|++|...-++.+|++......      
T Consensus       346 ---------------------------------~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~------  386 (494)
T 1vrd_A          346 ---------------------------------DGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQ------  386 (494)
T ss_dssp             ---------------------------------ESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEET------
T ss_pred             ---------------------------------ECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEEC------
Confidence                                             79988888999999999999999863333333333332222      


Q ss_pred             eeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccccccccc
Q psy3862         492 FYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND  571 (671)
Q Consensus       492 g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~  571 (671)
                                                                                                      
T Consensus       387 --------------------------------------------------------------------------------  386 (494)
T 1vrd_A          387 --------------------------------------------------------------------------------  386 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhcccccccceeeccccccccccccccchhcccc-ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccc
Q psy3862         572 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL-NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLK  650 (671)
Q Consensus       572 ~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~  650 (671)
                             | +.+|.||||++..+|.. .+..||+... +..++||+++.++|+|++.++++++.++||++|+|+|+.+++
T Consensus       387 -------~-~~~k~~~g~~~~~a~~~-g~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~  457 (494)
T 1vrd_A          387 -------G-RKYKAYRGMGSLGAMRS-GSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIK  457 (494)
T ss_dssp             -------T-EEEEECBCCC--------------------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             -------C-EEEEEEeccchHHHHhh-ccccchhhcccccccCCcceEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Confidence                   3 23456777777666653 2445555422 445799999999999999999999999999999999999999


Q ss_pred             ccccccEEEEeccc
Q psy3862         651 ELPRRATFIRCTAQ  664 (671)
Q Consensus       651 el~~~a~Fvrvt~q  664 (671)
                      ||++++.|+|+|+.
T Consensus       458 ~l~~~~~~~~~~~~  471 (494)
T 1vrd_A          458 ELQEKAVFVKITPA  471 (494)
T ss_dssp             HHHHHCCEEECC--
T ss_pred             HHHhhCCEEEEccc
Confidence            99999999999853

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=100.00  E-value=8e-35  Score=327.49  Aligned_cols=355  Identities=26%  Similarity=0.379  Sum_probs=213.8

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+|+||||+|+|+++.+.| ..++|+++||    +.+.+.+|+++++|+++++.+|++++++.||+|++|.|+++|++.
T Consensus        27 ~ralt~ddvlLmp~~s~~~p-~~v~l~~eLt----~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~  101 (514)
T 1jcn_A           27 ADDLTYNDFLILPGFIDFIA-DEVDLTSALT----RKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA  101 (514)
T ss_dssp             SSCCCGGGEEECCCCCCSCG-GGCBCCEESS----SSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             CcccccCcEEeccCccCCCc-ceeEEEeecc----CCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence            37999999999999999987 6999999998    789999999999999999999999999999999999999999987


Q ss_pred             Hhhhc----------Ccccccc----------e--------EE-e--------cC-CChhhH---------HHHHHHHHh
Q psy3862          96 AFAVQ----------NPDVIKH----------V--------AV-S--------SG-ISAKDL---------AGLKEILAA  128 (671)
Q Consensus        96 ~~i~~----------~p~~~~~----------~--------~v-~--------~G-~~~~d~---------~rl~~l~~a  128 (671)
                      +++++          .|.+..+          +        -+ .        .| ++.+|+         ..+.++|..
T Consensus       102 ~~v~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~  181 (514)
T 1jcn_A          102 NEVRKVKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTP  181 (514)
T ss_dssp             HHHHHHHTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC----------------C
T ss_pred             HHHHhhhhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCC
Confidence            66521          1111000          0        00 0        01 011111         112223321


Q ss_pred             --CC-------------------C-ceEEEeeccC----------------------------------CCChHHHHHHH
Q psy3862         129 --LP-------------------E-IEYICLDVAN----------------------------------GYTQTFVDFVR  152 (671)
Q Consensus       129 --~~-------------------~-~d~Ivld~a~----------------------------------G~~~~~~~~ik  152 (671)
                        .+                   + ....++|..+                                  |......+.++
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~~~~~rl~vga~vG~~~~~~~~a~  261 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLD  261 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCCTTCCBCTTSCBCCEEEECSSTTHHHHHH
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhCcchhcccCCceeeeeEecCchhhHHHHH
Confidence              00                   0 0011222100                                  00123455555


Q ss_pred             HHHHhCCCceEEEEEeccH----HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccC-CccccccHHHH
Q psy3862         153 RIREMYPKHVIIAGNVVTG----EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMV  227 (671)
Q Consensus       153 ~lr~~~P~~~li~g~v~t~----e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a  227 (671)
                      .+.+.......+-.+-...    +..+++.+.                      +|+         +| ++|+|.|.+.+
T Consensus       262 ~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~----------------------~~~---------~pvi~~~v~t~~~a  310 (514)
T 1jcn_A          262 LLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQK----------------------YPH---------LQVIGGNVVTAAQA  310 (514)
T ss_dssp             HHHHTTCSEEEECCSCCCSHHHHHHHHHHHHH----------------------CTT---------CEEEEEEECSHHHH
T ss_pred             HHHHcCCCEEEeeccCCcchhHHHHHHHHHHh----------------------CCC---------CceEecccchHHHH
Confidence            5544332222221111111    223333222                      111         12 35678888888


Q ss_pred             HHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCC
Q psy3862         228 EELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRS  307 (671)
Q Consensus       228 ~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rs  307 (671)
                      +.|.++|||+|.||+|||++||||.+.+.|.||.+++..|++.++.                                  
T Consensus       311 ~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~----------------------------------  356 (514)
T 1jcn_A          311 KNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR----------------------------------  356 (514)
T ss_dssp             HHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG----------------------------------
T ss_pred             HHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh----------------------------------
Confidence            8888888888899999999999999999999999999999988763                                  


Q ss_pred             ccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeee
Q psy3862         308 TLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADG  387 (671)
Q Consensus       308 t~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~  387 (671)
                                             .++|||+                                                  
T Consensus       357 -----------------------~~ipVia--------------------------------------------------  363 (514)
T 1jcn_A          357 -----------------------FGVPIIA--------------------------------------------------  363 (514)
T ss_dssp             -----------------------GTCCEEE--------------------------------------------------
T ss_pred             -----------------------CCCCEEE--------------------------------------------------
Confidence                                   2588887                                                  


Q ss_pred             cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862         388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                                                                               +||+....++++++.+|||+|++
T Consensus       364 ---------------------------------------------------------~GGI~~~~di~kala~GAd~V~i  386 (514)
T 1jcn_A          364 ---------------------------------------------------------DGGIQTVGHVVKALALGASTVMM  386 (514)
T ss_dssp             ---------------------------------------------------------ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             ---------------------------------------------------------ECCCCCHHHHHHHHHcCCCeeeE
Confidence                                                                     79987788999999999999999


Q ss_pred             CccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCc
Q psy3862         468 GGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA  547 (671)
Q Consensus       468 G~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g  547 (671)
                      |...-++.+|+++.....                                                              
T Consensus       387 G~~~l~~~e~~~~~~~~~--------------------------------------------------------------  404 (514)
T 1jcn_A          387 GSLLAATTEAPGEYFFSD--------------------------------------------------------------  404 (514)
T ss_dssp             STTTTTSTTSSCC-------------------------------------------------------------------
T ss_pred             CHHHHcCCcCCcceEeEC--------------------------------------------------------------
Confidence            975555444544332111                                                              


Q ss_pred             ccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccc-cccchhcccc-ccccCCCceEecccccC
Q psy3862         548 SKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRR-ATFIRCTAQL-NNVAAEGKTVQVPYRGD  625 (671)
Q Consensus       548 ~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~-~~~~r~~~~~-~~~~~eG~~~~v~~kG~  625 (671)
                                                     | +.+|.||||+|.++|.+. ++.+||+.+. +.+.+||+++.|+|+|+
T Consensus       405 -------------------------------g-~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~g~  452 (514)
T 1jcn_A          405 -------------------------------G-VRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGS  452 (514)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             -------------------------------C-EEEEEecCcCCHHHHhhccccchhhccccccceecccceecCCCccc
Confidence                                           1 134567888887777643 3456776443 35689999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCcccccccccc-----cEEEEeccc
Q psy3862         626 VNDTVQDILGGLRSACTYVGASKLKELPRR-----ATFIRCTAQ  664 (671)
Q Consensus       626 v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~-----a~Fvrvt~q  664 (671)
                      +.++|.+|.++||++|+|+|+++|+||+++     ++|+++|.+
T Consensus       453 ~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~  496 (514)
T 1jcn_A          453 IQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTMS  496 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSBHHHHHHHHHTTCSCEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHhhCcccHHHHHhhcccCceEEEEechh
Confidence            999999999999999999999999999998     888888764

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=100.00  E-value=7.1e-34  Score=310.85  Aligned_cols=330  Identities=35%  Similarity=0.599  Sum_probs=237.6

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ..+++||||+|+|+.+.+.+ ++|||+++|+    ++++++.||+.+||+++++.++|.+++++||+|+++.++++|++.
T Consensus         7 ~~~~~fd~v~l~p~~~~~~~-~~vdlst~l~----~g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~~~~s~e~~~   81 (404)
T 1eep_A            7 KEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQR   81 (404)
T ss_dssp             CCCCCGGGEEECCCCCCSCG-GGCCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHH
T ss_pred             ccCCCcccEEEccCCCCcCc-cccccceecc----CCcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHH
Confidence            36899999999999988654 7999999996    589999999999999999999999999999999999999999875


Q ss_pred             Hhhhc---C-----------------------------------------ccccc------ceEEecCCChhhHHHHHHH
Q psy3862          96 AFAVQ---N-----------------------------------------PDVIK------HVAVSSGISAKDLAGLKEI  125 (671)
Q Consensus        96 ~~i~~---~-----------------------------------------p~~~~------~~~v~~G~~~~d~~rl~~l  125 (671)
                      ..+.+   .                                         |...+      .+.++.+...+..+++..+
T Consensus        82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~a~~~  161 (404)
T 1eep_A           82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEEL  161 (404)
T ss_dssp             HHHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHH
T ss_pred             HHHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCChhHHHHHHHH
Confidence            54421   1                                         10000      1233444444456777777


Q ss_pred             HHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCc
Q psy3862         126 LAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSD  205 (671)
Q Consensus       126 ~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~  205 (671)
                      +++  +.+++.++..++++..+.+.++++++.+|...++++++.+.+.++.++++|||+|                    
T Consensus       162 ~~~--G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I--------------------  219 (404)
T 1eep_A          162 VKA--HVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCL--------------------  219 (404)
T ss_dssp             HHT--TCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEE--------------------
T ss_pred             HHC--CCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEE--------------------
Confidence            777  7788888888888878888898888877765666667777777777777777777                    


Q ss_pred             chhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhc
Q psy3862         206 FFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAM  285 (671)
Q Consensus       206 ~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (671)
                                                       .||.++|++|+|+...+.|.||++++.+++++++.            
T Consensus       220 ---------------------------------~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~------------  254 (404)
T 1eep_A          220 ---------------------------------KVGIGPGSICTTRIVAGVGVPQITAICDVYEACNN------------  254 (404)
T ss_dssp             ---------------------------------EECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTT------------
T ss_pred             ---------------------------------EECCCCCcCcCccccCCCCcchHHHHHHHHHHHhh------------
Confidence                                             56778888999999999999999999999887642            


Q ss_pred             cceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCC
Q psy3862         286 AQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY  365 (671)
Q Consensus       286 ~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~  365 (671)
                                                                   .++|||+                            
T Consensus       255 ---------------------------------------------~~ipVia----------------------------  261 (404)
T 1eep_A          255 ---------------------------------------------TNICIIA----------------------------  261 (404)
T ss_dssp             ---------------------------------------------SSCEEEE----------------------------
T ss_pred             ---------------------------------------------cCceEEE----------------------------
Confidence                                                         2588888                            


Q ss_pred             CHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceee
Q psy3862         366 TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVD  445 (671)
Q Consensus       366 ~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  445 (671)
                                                                                                     +
T Consensus       262 -------------------------------------------------------------------------------~  262 (404)
T 1eep_A          262 -------------------------------------------------------------------------------D  262 (404)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------E
Confidence                                                                                           7


Q ss_pred             ccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCC
Q psy3862         446 GGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRG  525 (671)
Q Consensus       446 gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~G  525 (671)
                      ||+....++++++.+|||+|++|.-.-++.+|++......|..                                     
T Consensus       263 GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~-------------------------------------  305 (404)
T 1eep_A          263 GGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKK-------------------------------------  305 (404)
T ss_dssp             SCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEE-------------------------------------
T ss_pred             CCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeE-------------------------------------
Confidence            9976778889999999999999963333344444443333333                                     


Q ss_pred             CHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhc
Q psy3862         526 DVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT  605 (671)
Q Consensus       526 di~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~  605 (671)
                                                                               +|.||||++..+|.+ ++.+||+
T Consensus       306 ---------------------------------------------------------~k~~~g~~~~g~~~~-g~~~~~~  327 (404)
T 1eep_A          306 ---------------------------------------------------------FKSYVGMGSISAMKR-GSKSRYF  327 (404)
T ss_dssp             ---------------------------------------------------------EEC--------------------
T ss_pred             ---------------------------------------------------------EeecCCCCCHHHHhh-ccccchh
Confidence                                                                     345566665555542 2224443


Q ss_pred             c----ccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         606 A----QLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       606 ~----~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      .    +.+..++||+++.|+|+|++++++.+|.++||+.|+|+|+++|+||++++.|+|+|++
T Consensus       328 ~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~~~~~~~~~~  390 (404)
T 1eep_A          328 QLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS  390 (404)
T ss_dssp             -----------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred             cccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCcEEEEchh
Confidence            2    1234579999999999999999999999999999999999999999999999999854

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=100.00  E-value=1e-35  Score=320.92  Aligned_cols=233  Identities=24%  Similarity=0.319  Sum_probs=192.7

Q ss_pred             ceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC
Q psy3862         287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT  366 (671)
Q Consensus       287 ~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~  366 (671)
                      |++ .+.+||||||||+|++|++.|+ ||||+|+|+    +.+++++|||+||||+|++++||+++++.||||+||++++
T Consensus         7 ~~~-~~~~~~fddv~lvp~~~~~~~~-~vdl~t~lt----~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~s   80 (366)
T 4fo4_A            7 LRI-AKEALTFDDVLLVPAHSTVLPN-TADLRTRLT----KNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMS   80 (366)
T ss_dssp             SCC-CCCCCCGGGEEECCCCCCCCGG-GCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSC
T ss_pred             hhh-hcccCCcceEEEECCCCCCChh-hcccceecc----cccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCCC
Confidence            344 4689999999999999999995 999999998    5788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccccc-ceeeecccC---hhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCc
Q psy3862         367 LEEWKAFAVQNPDVIK-HVADGGCTS---PGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG  442 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~-~v~~~~~~~---~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (671)
                      +|+|.++++++++.-+ .+....+++   .++++.++++|+|+|+|| ++|||+...++.++.++..||.+         
T Consensus        81 ~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~id-ta~G~~~~~~~~I~~ik~~~p~v---------  150 (366)
T 4fo4_A           81 IEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLID-SSHGHSEGVLQRIRETRAAYPHL---------  150 (366)
T ss_dssp             HHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEE-CSCTTSHHHHHHHHHHHHHCTTC---------
T ss_pred             HHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEe-CCCCCCHHHHHHHHHHHHhcCCC---------
Confidence            9999999987655322 233333333   356677799999999999 99999988888777777666654         


Q ss_pred             eeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCce
Q psy3862         443 VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKT  518 (671)
Q Consensus       443 ~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~  518 (671)
                      .+++|++.+.+.++ +.++|||+|+||+ +|| +.|+|+.+        .++|.||++++.+++..+..+   ..++|+ 
T Consensus       151 ~Vi~G~v~t~e~A~~a~~aGAD~I~vG~-gpG-s~~~tr~~--------~g~g~p~~~~l~~v~~~~~~~~iPVIA~GG-  219 (366)
T 4fo4_A          151 EIIGGNVATAEGARALIEAGVSAVKVGI-GPG-SICTTRIV--------TGVGVPQITAIADAAGVANEYGIPVIADGG-  219 (366)
T ss_dssp             EEEEEEECSHHHHHHHHHHTCSEEEECS-SCS-TTBCHHHH--------HCCCCCHHHHHHHHHHHHGGGTCCEEEESC-
T ss_pred             ceEeeeeCCHHHHHHHHHcCCCEEEEec-CCC-CCCCcccc--------cCcccchHHHHHHHHHHHhhcCCeEEEeCC-
Confidence            34678889999888 5799999999996 999 99999863        478999999999877544332   133443 


Q ss_pred             EeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         519 VQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       519 v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                        |.+++|++||++     ||+|+.|++++|||++
T Consensus       220 --I~~~~di~kala~GAd~V~vGs~f~~t~Esp~~  252 (366)
T 4fo4_A          220 --IRFSGDISKAIAAGASCVMVGSMFAGTEEAPGE  252 (366)
T ss_dssp             --CCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred             --CCCHHHHHHHHHcCCCEEEEChHhhcCCCCCch
Confidence              789999999999     9999999999998887

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=100.00  E-value=8.6e-33  Score=295.58  Aligned_cols=316  Identities=33%  Similarity=0.521  Sum_probs=237.2

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      ...++||||+|+|+.++..+.+++||+++|+     +++++.||+.++|++++..++|.++++.||+|+++.++. +...
T Consensus        11 ~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~-----g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~-~~~~   84 (336)
T 1ypf_A           11 GNVFDYEDIQLIPAKCIVNSRSECDTTVTLG-----KHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQP-EKRI   84 (336)
T ss_dssp             -CCCCGGGEEECCCCCCCSSGGGCBCCEEET-----TEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSG-GGHH
T ss_pred             cccCCcceEEEecccCCCCCcccCcceEEEC-----CEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCC-HHHH
Confidence            4679999999999999988889999999995     689999999999999999999999999999999887643 3344


Q ss_pred             HhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHH
Q psy3862          96 AFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVE  175 (671)
Q Consensus        96 ~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~  175 (671)
                      +++++......++.+..|..++++++++.+.++.+..+++.+|.++|++....+.++++++.+|...++.|++.+.+.|+
T Consensus        85 ~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~  164 (336)
T 1ypf_A           85 SFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVR  164 (336)
T ss_dssp             HHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHH
T ss_pred             HHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHH
Confidence            44433211112455556777777788888888743378888888888888888999999888876667777788888888


Q ss_pred             HHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862         176 ELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG  255 (671)
Q Consensus       176 ~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g  255 (671)
                      .++++|||+|+                                                     |+..+|..|+|+...+
T Consensus       165 ~a~~aGad~Iv-----------------------------------------------------vs~hgG~~~~~~~~~~  191 (336)
T 1ypf_A          165 ELENAGADATK-----------------------------------------------------VGIGPGKVCITKIKTG  191 (336)
T ss_dssp             HHHHHTCSEEE-----------------------------------------------------ECSSCSTTCHHHHHHS
T ss_pred             HHHHcCCCEEE-----------------------------------------------------EecCCCceeecccccC
Confidence            88888888884                                                     4445677888999999


Q ss_pred             cCcc--hhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCc
Q psy3862         256 VGYP--QFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGV  333 (671)
Q Consensus       256 v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~i  333 (671)
                      .|.|  ++.++.+++++.                                                            ++
T Consensus       192 ~g~~g~~~~~l~~v~~~~------------------------------------------------------------~i  211 (336)
T 1ypf_A          192 FGTGGWQLAALRWCAKAA------------------------------------------------------------SK  211 (336)
T ss_dssp             CSSTTCHHHHHHHHHHTC------------------------------------------------------------SS
T ss_pred             cCCchhHHHHHHHHHHHc------------------------------------------------------------CC
Confidence            9999  999999888643                                                            47


Q ss_pred             ceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccc
Q psy3862         334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFA  413 (671)
Q Consensus       334 PiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~  413 (671)
                      |||+                                                                            
T Consensus       212 pVIa----------------------------------------------------------------------------  215 (336)
T 1ypf_A          212 PIIA----------------------------------------------------------------------------  215 (336)
T ss_dssp             CEEE----------------------------------------------------------------------------
T ss_pred             cEEE----------------------------------------------------------------------------
Confidence            8887                                                                            


Q ss_pred             cccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEee
Q psy3862         414 GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       414 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~  493 (671)
                                                     +||+....++++++.+|||+|++|...-                     
T Consensus       216 -------------------------------~GGI~~g~Dv~kalalGAdaV~iGr~~l---------------------  243 (336)
T 1ypf_A          216 -------------------------------DGGIRTNGDVAKSIRFGATMVMIGSLFA---------------------  243 (336)
T ss_dssp             -------------------------------ESCCCSTHHHHHHHHTTCSEEEESGGGT---------------------
T ss_pred             -------------------------------eCCCCCHHHHHHHHHcCCCEEEeChhhh---------------------
Confidence                                           7998888899999999999999985221                     


Q ss_pred             CcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccch
Q psy3862         494 GMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTV  573 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~  573 (671)
                                                                     +++|+|++.+                       
T Consensus       244 -----------------------------------------------~t~Es~~~~~-----------------------  253 (336)
T 1ypf_A          244 -----------------------------------------------GHEESPGETI-----------------------  253 (336)
T ss_dssp             -----------------------------------------------TCTTSSSCCC-----------------------
T ss_pred             -----------------------------------------------ccccCCCcee-----------------------
Confidence                                                           2334443321                       


Q ss_pred             hhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccc
Q psy3862         574 QDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELP  653 (671)
Q Consensus       574 ~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~  653 (671)
                        +.+| +.+|.||||++..++.            .++.|||++..+||||++.+++.++.++||++|+|+|+++++||+
T Consensus       254 --~~~g-~~~k~~~g~~~~~~~g------------~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~el~  318 (336)
T 1ypf_A          254 --EKDG-KLYKEYFGSASEFQKG------------EKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIR  318 (336)
T ss_dssp             --------------------------------------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGGGG
T ss_pred             --eeCC-eEeeeeecccchhhcc------------CccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHHhC
Confidence              1124 2457899999864321            234699999999999999999999999999999999999999995


Q ss_pred             cccEEEEeccc
Q psy3862         654 RRATFIRCTAQ  664 (671)
Q Consensus       654 ~~a~Fvrvt~q  664 (671)
                       ++.|++++.+
T Consensus       319 -~~~~~~~~~~  328 (336)
T 1ypf_A          319 -TVDYVVVKNS  328 (336)
T ss_dssp             -GCCEEECSCC
T ss_pred             -cCCEEEEccc
Confidence             6899999653

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.98  E-value=3.4e-33  Score=312.85  Aligned_cols=230  Identities=25%  Similarity=0.353  Sum_probs=189.8

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      -..+||||||||+|++|++.| ++|||+++|+    +++.+++||+||+|||||+.+||++|++.||+|+||+++++|+|
T Consensus         7 ~~~~~t~~d~~~~p~~~~~~~-~~~~~~t~lt----~~i~l~iPivsa~MdtVTe~~ma~a~a~~GGiGvI~~n~s~e~q   81 (496)
T 4fxs_A            7 AKEALTFDDVLLVPAHSTVLP-NTADLRTRLT----KNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQ   81 (496)
T ss_dssp             CSCCCCGGGEEECCCCCCCCG-GGCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHHTCEEEECSSSCHHHH
T ss_pred             cccCcCcccEEEecCcccccc-ccccccceec----cccccCCCceecCcchhhHHHHHHHHHHcCCcceecCCCCHHHH
Confidence            367999999999999999998 7999999998    68999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcc----------------------------------------------------------------------c
Q psy3862         371 KAFAVQNPD----------------------------------------------------------------------V  380 (671)
Q Consensus       371 ~~~v~~~~~----------------------------------------------------------------------~  380 (671)
                      .+++.+++.                                                                      +
T Consensus        82 a~~V~~Vk~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~  161 (496)
T 4fxs_A           82 AAQVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVAAVMTPKERL  161 (496)
T ss_dssp             HHHHHHHHHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGC
T ss_pred             HHHHHhccccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCC
Confidence            887654200                                                                      0


Q ss_pred             -----------------------c-------------------c---------------ceeeecccCh---hhHHHHHH
Q psy3862         381 -----------------------I-------------------K---------------HVADGGCTSP---GDVAKAMG  400 (671)
Q Consensus       381 -----------------------~-------------------~---------------~v~~~~~~~~---~~~~~l~~  400 (671)
                                             +                   +               .+.++.++.+   +++.++++
T Consensus       162 vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~  241 (496)
T 4fxs_A          162 ATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVE  241 (496)
T ss_dssp             CEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHh
Confidence                                   0                   0               0112222222   45566789


Q ss_pred             cCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCC
Q psy3862         401 AGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG  479 (671)
Q Consensus       401 aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt  479 (671)
                      +|+|+|+|| ++|+|+...+++++.++..||.+         .|.+||+.+.+.++ +.++|||+|+||+ |+| +.|+|
T Consensus       242 aG~d~I~id-~a~g~~~~~~~~i~~ir~~~p~~---------~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~-g~G-s~~~t  309 (496)
T 4fxs_A          242 AGVDVLLID-SSHGHSEGVLQRIRETRAAYPHL---------EIIGGNVATAEGARALIEAGVSAVKVGI-GPG-SICTT  309 (496)
T ss_dssp             TTCSEEEEE-CSCTTSHHHHHHHHHHHHHCTTC---------CEEEEEECSHHHHHHHHHHTCSEEEECS-SCC-TTBCH
T ss_pred             ccCceEEec-cccccchHHHHHHHHHHHHCCCc---------eEEEcccCcHHHHHHHHHhCCCEEEECC-CCC-cCccc
Confidence            999999999 99999998899888888777655         24568889999988 5699999999996 999 99999


Q ss_pred             cEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         480 ELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       480 ~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      |.+        .|+|.|+.+++.+++..+.++.   .++|+   |.+++|++||++     ||+|++|++++|+|++
T Consensus       310 r~~--------~g~g~p~~~~i~~v~~~~~~~~iPVIa~GG---I~~~~di~kala~GAd~V~iGs~f~~t~Espg~  375 (496)
T 4fxs_A          310 RIV--------TGVGVPQITAIADAAGVANEYGIPVIADGG---IRFSGDISKAIAAGASCVMVGSMFAGTEEAPGE  375 (496)
T ss_dssp             HHH--------HCCCCCHHHHHHHHHHHHGGGTCCEEEESC---CCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred             ccc--------cCCCccHHHHHHHHHHHhccCCCeEEEeCC---CCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcc
Confidence            874        5789999999999876654431   34443   799999999999     9999999999988876

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=99.97  E-value=8.8e-33  Score=298.00  Aligned_cols=229  Identities=21%  Similarity=0.239  Sum_probs=186.0

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      .+.+||||||+|+|++|++.| +||||+|+|+    +.+++++||+++|||+|++++||+++++.||+++||+++++++|
T Consensus         9 ~~~~~~fddv~l~p~~~~~~~-~~vdl~t~l~----~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~~s~e~~   83 (361)
T 3khj_A            9 IGKGLTFEDILLVPNYSEVLP-REVSLETKLT----KNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQ   83 (361)
T ss_dssp             EEECCCGGGEEECCCCBCCCG-GGCCCCEESS----SSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSSSCHHHH
T ss_pred             cccCCCcceEEEECCCCCCCH-HHccCceecc----cccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecCCCHHHH
Confidence            367999999999999999998 9999999997    56889999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccc-cceeeecccC-hhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccc
Q psy3862         371 KAFAVQNPDVI-KHVADGGCTS-PGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGC  448 (671)
Q Consensus       371 ~~~v~~~~~~~-~~v~~~~~~~-~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~  448 (671)
                      .++++++++.- ..+.+..++. .++++.++++|+|+|+|| ++|||+....+.++.++..+          +..++.|+
T Consensus        84 ~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld-~a~G~~~~~~~~i~~i~~~~----------~~~Vivg~  152 (361)
T 3khj_A           84 VNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLD-SAHGHSLNIIRTLKEIKSKM----------NIDVIVGN  152 (361)
T ss_dssp             HHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEEC-CSCCSBHHHHHHHHHHHHHC----------CCEEEEEE
T ss_pred             HHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEe-CCCCCcHHHHHHHHHHHHhc----------CCcEEEcc
Confidence            99998764321 1233333444 466677799999999999 89999876666655444433          22345567


Q ss_pred             cCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecC
Q psy3862         449 TSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYR  524 (671)
Q Consensus       449 v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~  524 (671)
                      +.+.+.++ +.++|||+|+||+ +|| ++|+|+.+        .|+|.|+.+++.+++..+.++   ..++|+   |.++
T Consensus       153 v~t~e~A~~l~~aGaD~I~VG~-~~G-s~~~tr~~--------~g~g~p~~~~i~~v~~~~~~~~iPVIA~GG---I~~~  219 (361)
T 3khj_A          153 VVTEEATKELIENGADGIKVGI-GPG-SICTTRIV--------AGVGVPQITAIEKCSSVASKFGIPIIADGG---IRYS  219 (361)
T ss_dssp             ECSHHHHHHHHHTTCSEEEECS-SCC-TTCCHHHH--------TCBCCCHHHHHHHHHHHHHHHTCCEEEESC---CCSH
T ss_pred             CCCHHHHHHHHHcCcCEEEEec-CCC-cCCCcccc--------cCCCCCcHHHHHHHHHHHhhcCCeEEEECC---CCCH
Confidence            88888888 5799999999996 999 99999864        468899999999886544332   134443   7899


Q ss_pred             CCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         525 GDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       525 Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      +|+.||++     ||+|+.|++++|+|++
T Consensus       220 ~di~kala~GAd~V~vGs~~~~t~Esp~~  248 (361)
T 3khj_A          220 GDIGKALAVGASSVMIGSILAGTEESPGE  248 (361)
T ss_dssp             HHHHHHHHHTCSEEEESTTTTTBTTSSCE
T ss_pred             HHHHHHHHcCCCEEEEChhhhcCCcCCcc
Confidence            99999999     8999999999988766

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.97  E-value=4e-32  Score=303.87  Aligned_cols=230  Identities=25%  Similarity=0.315  Sum_probs=189.1

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      ...+||||||||+|++|++.| ++|||+++|+    +++.+++|++||+|||||+.+||++|++.||+|+||+++++|++
T Consensus         6 ~~~~~t~~d~~~~p~~~~~~~-~~~~~~t~lt----~~i~l~iPivsa~M~tVTe~~lA~ala~~GGiGvI~~~~~~e~~   80 (490)
T 4avf_A            6 SQEALTFDDVLLIPGYSEVLP-KDVSLKTRLT----RGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMGIEQQ   80 (490)
T ss_dssp             EEEECCGGGEEECCCCBCSCG-GGSCCCEEEE----TTEEESSSEEECSCTTTCSHHHHHHHHHHTSEEEECCSSCHHHH
T ss_pred             cCCCCCcceEEEeCCCCcccc-cceeeecccc----cCcccCCCccccchhhhCHHHHHHHHHHcCCCccccCCCCHHHH
Confidence            367999999999999999998 7999999998    68999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCc---c------------------------------------------------------------------c-
Q psy3862         371 KAFAVQNP---D------------------------------------------------------------------V-  380 (671)
Q Consensus       371 ~~~v~~~~---~------------------------------------------------------------------~-  380 (671)
                      .+++.+++   +                                                                  + 
T Consensus        81 a~~v~~vk~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~v  160 (490)
T 4avf_A           81 AAEVRKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLV  160 (490)
T ss_dssp             HHHHHHHHHCCC--------------------------------------------------------------------
T ss_pred             HHHhhhhcccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhccccCCcHHHHhccCCCCE
Confidence            88775320   0                                                                  0 


Q ss_pred             -----------------------------------------cc---------------ceeeecccCh---hhHHHHHHc
Q psy3862         381 -----------------------------------------IK---------------HVADGGCTSP---GDVAKAMGA  401 (671)
Q Consensus       381 -----------------------------------------~~---------------~v~~~~~~~~---~~~~~l~~a  401 (671)
                                                               ++               .+.++.++.+   +++++++++
T Consensus       161 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~a  240 (490)
T 4avf_A          161 TAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAA  240 (490)
T ss_dssp             ----------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHT
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhc
Confidence                                                     00               0112223332   445667899


Q ss_pred             CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862         402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                      |+|+|+|| ++|||+....++++.++..||.+         .+.+|++.+.+.++ +.++|||+|+||+ |+| +.|+||
T Consensus       241 G~d~I~id-~a~g~~~~~~~~v~~i~~~~p~~---------~Vi~g~v~t~e~a~~l~~aGaD~I~vg~-g~G-s~~~t~  308 (490)
T 4avf_A          241 GVDVVVVD-TAHGHSKGVIERVRWVKQTFPDV---------QVIGGNIATAEAAKALAEAGADAVKVGI-GPG-SICTTR  308 (490)
T ss_dssp             TCSEEEEE-CSCCSBHHHHHHHHHHHHHCTTS---------EEEEEEECSHHHHHHHHHTTCSEEEECS-SCS-TTCHHH
T ss_pred             ccceEEec-ccCCcchhHHHHHHHHHHHCCCc---------eEEEeeeCcHHHHHHHHHcCCCEEEECC-CCC-cCCCcc
Confidence            99999999 99999988888887777776654         34678889999988 5699999999996 999 999998


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      .+        .|+|.|+++++.+++.++.++.   .++|+   |.+++|+.||++     ||+|++|++++|+|++
T Consensus       309 ~~--------~g~g~p~~~~l~~v~~~~~~~~iPVIa~GG---I~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~  373 (490)
T 4avf_A          309 IV--------AGVGVPQISAIANVAAALEGTGVPLIADGG---IRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGE  373 (490)
T ss_dssp             HH--------TCBCCCHHHHHHHHHHHHTTTTCCEEEESC---CCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSC
T ss_pred             cc--------CCCCccHHHHHHHHHHHhccCCCcEEEeCC---CCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCc
Confidence            64        4789999999999876554331   33332   789999999999     8999999999998887

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.97  E-value=2e-31  Score=299.60  Aligned_cols=215  Identities=23%  Similarity=0.308  Sum_probs=174.0

Q ss_pred             eccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHH
Q psy3862         290 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE  369 (671)
Q Consensus       290 ~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~  369 (671)
                      ....+||||||||+|++|++.| ++|||+++|+    +++.+++|+|||+|||||+.+||++|++.||+|+||+++++++
T Consensus        30 ~~~~~~t~~d~~~~p~~~~~~~-~~~~~~t~lt----~~i~l~iPivsa~MdtvTe~~lAia~a~~GgiGvIh~~~~~~~  104 (511)
T 3usb_A           30 FVKEGLTFDDVLLVPAKSDVLP-REVSVKTVLS----ESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQ  104 (511)
T ss_dssp             TTCCCCCGGGEEECCCCCCCCT-TTSBCCEEEE----TTEEESSSEEECSCTTTCSHHHHHHHHHHTCEEEECSSSCHHH
T ss_pred             hccCCcceEEEEEECCcccccc-cceEeeeEee----cccccCCCccccCchhhcHHHHHHHHHhcCCceeecccCCHHH
Confidence            3568999999999999999998 7999999998    6899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCc-----------------------------------------------------------------------
Q psy3862         370 WKAFAVQNP-----------------------------------------------------------------------  378 (671)
Q Consensus       370 ~~~~v~~~~-----------------------------------------------------------------------  378 (671)
                      |.++++++.                                                                       
T Consensus       105 q~~~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~~~~~V~~vM~~~  184 (511)
T 3usb_A          105 QAEQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKE  184 (511)
T ss_dssp             HHHHHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCCSSSBHHHHCCCC
T ss_pred             HHHHHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhccCCCcHHHhcccC
Confidence            987765420                                                                       


Q ss_pred             cc-----------------------cc----------------------------------ceeeecccCh---hhHHHH
Q psy3862         379 DV-----------------------IK----------------------------------HVADGGCTSP---GDVAKA  398 (671)
Q Consensus       379 ~~-----------------------~~----------------------------------~v~~~~~~~~---~~~~~l  398 (671)
                      ++                       ++                                  .+.+..++.+   +++..+
T Consensus       185 ~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aL  264 (511)
T 3usb_A          185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDAL  264 (511)
T ss_dssp             CCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHH
Confidence            00                       00                                  0011112222   445667


Q ss_pred             HHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccC
Q psy3862         399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQS  477 (671)
Q Consensus       399 ~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~c  477 (671)
                      +++|+|+|+|| ++|+|+...+++++.++..||.+         .+++|++.+.+.++ +.++|||+|+||+ |+| ++|
T Consensus       265 veaGvd~I~Id-~a~g~~~~v~~~i~~i~~~~~~~---------~vi~g~v~t~e~a~~~~~aGad~i~vg~-g~g-si~  332 (511)
T 3usb_A          265 VKASVDAIVLD-TAHGHSQGVIDKVKEVRAKYPSL---------NIIAGNVATAEATKALIEAGANVVKVGI-GPG-SIC  332 (511)
T ss_dssp             HHTTCSEEEEE-CSCTTSHHHHHHHHHHHHHCTTS---------EEEEEEECSHHHHHHHHHHTCSEEEECS-SCS-TTC
T ss_pred             HhhccceEEec-ccccchhhhhhHHHHHHHhCCCc---------eEEeeeeccHHHHHHHHHhCCCEEEECC-CCc-ccc
Confidence            89999999999 89999999999888887777654         24677789999988 5799999999996 999 999


Q ss_pred             CCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH
Q psy3862         478 GGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ  532 (671)
Q Consensus       478 tt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia  532 (671)
                      +|+.+        .|+|.|+++++.+++..+.++.   .++|+   |.+++|++||++
T Consensus       333 ~~~~~--------~g~g~p~~~~l~~v~~~~~~~~iPVIa~GG---I~~~~di~kala  379 (511)
T 3usb_A          333 TTRVV--------AGVGVPQLTAVYDCATEARKHGIPVIADGG---IKYSGDMVKALA  379 (511)
T ss_dssp             CHHHH--------HCCCCCHHHHHHHHHHHHHTTTCCEEEESC---CCSHHHHHHHHH
T ss_pred             ccccc--------cCCCCCcHHHHHHHHHHHHhCCCcEEEeCC---CCCHHHHHHHHH
Confidence            99864        4789999999988766555431   34443   789999999998

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=99.97  E-value=5e-31  Score=283.48  Aligned_cols=239  Identities=39%  Similarity=0.581  Sum_probs=185.8

Q ss_pred             ceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC
Q psy3862         287 QKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT  366 (671)
Q Consensus       287 ~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~  366 (671)
                      -||+.+..++||||+|+|+++++.+|++|||+++|.|++++.+.++.|||.|||+++++.+||+++++.||+|+||.+++
T Consensus        12 ~~~~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~s   91 (351)
T 2c6q_A           12 SGLVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHYS   91 (351)
T ss_dssp             -------CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTCC
T ss_pred             ccccccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCCC
Confidence            47888999999999999999888888999999999988888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcccccceeeecccChhh---HHHHHHc--CCcEEEEccccccccccccccccccccccccccccccccC
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSPGD---VAKAMGA--GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG  441 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~~~---~~~l~~a--G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (671)
                      +|+|.+++++.|+.+..+....+.++++   ++.++++  |+|++.++ .++|++....+.++.++..+|.+        
T Consensus        92 ~e~~~~~i~~~p~~l~~v~~~~g~~~~~~~~~~~l~~~~~g~~~i~i~-~~~g~~~~~~~~i~~lr~~~~~~--------  162 (351)
T 2c6q_A           92 LVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLD-VANGYSEHFVEFVKDVRKRFPQH--------  162 (351)
T ss_dssp             HHHHHHHHHHCGGGCTTEEEEECSSHHHHHHHHHHHHHCTTCCEEEEE-CSCTTBHHHHHHHHHHHHHCTTS--------
T ss_pred             HHHHHHHHhhCchhhheeEeecCCChHHHHHHHHHHhccCCCCEEEEE-ecCCCcHHHHHHHHHHHHhcCCC--------
Confidence            9999999987777665555554555433   4445676  99999998 67787665555555444444322        


Q ss_pred             ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCc
Q psy3862         442 GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGK  517 (671)
Q Consensus       442 ~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~  517 (671)
                      .++ .|++.+.+.++ +.++|||+|.|+. |+| ++|++|..        .|+|.|+++++.++...+.++   ..++|+
T Consensus       163 ~vi-~g~v~t~e~A~~a~~aGaD~I~v~~-g~G-~~~~~r~~--------~g~~~p~~~~l~~v~~~~~~~~ipvIa~GG  231 (351)
T 2c6q_A          163 TIM-AGNVVTGEMVEELILSGADIIKVGI-GPG-SVCTTRKK--------TGVGYPQLSAVMECADAAHGLKGHIISDGG  231 (351)
T ss_dssp             EEE-EEEECSHHHHHHHHHTTCSEEEECS-SCS-TTBCHHHH--------HCBCCCHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred             eEE-EEeCCCHHHHHHHHHhCCCEEEECC-CCC-cCcCcccc--------CCCCccHHHHHHHHHHHHhhcCCcEEEeCC
Confidence            133 34567777777 6799999999995 888 78988753        367899999988776544332   123332


Q ss_pred             eEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         518 TVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       518 ~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                         |+++.|++|||+     ||+|++|.+++|+|++
T Consensus       232 ---I~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~  264 (351)
T 2c6q_A          232 ---CSCPGDVAKAFGAGADFVMLGGMLAGHSESGGE  264 (351)
T ss_dssp             ---CCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSC
T ss_pred             ---CCCHHHHHHHHHcCCCceeccHHHhcCccCcch
Confidence               799999999999     9999999999988776

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.95  E-value=5.5e-29  Score=278.31  Aligned_cols=258  Identities=23%  Similarity=0.301  Sum_probs=194.3

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      ...+||||||||+|+||++.| ++||++++|+    +.+.+.+|||+|+||++++.+||+++++.||+|+||+++++|++
T Consensus        11 ~~~~~~~dd~~~~p~~~~~~~-~~v~l~t~lt----~~l~l~~PIi~a~m~~vt~~ela~ava~~GglG~i~~~~~~e~~   85 (486)
T 2cu0_A           11 AIKGYTFDDVLLIPQATEVEP-KDVDVSTRIT----PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQ   85 (486)
T ss_dssp             CCCCCCGGGEEECCCCCSSCS-TTCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHH
T ss_pred             CCCCcCccCEEEcCCcCCCCc-ceEEEEeeec----CCcccccceEEccceeecHHHHHHHHHhcCCceeecCCCCHHHH
Confidence            347899999999999999998 6999999998    67899999999999999999999999999999999999999987


Q ss_pred             HHHHhcCc---cc----------------------------c-------------------------------c------
Q psy3862         371 KAFAVQNP---DV----------------------------I-------------------------------K------  382 (671)
Q Consensus       371 ~~~v~~~~---~~----------------------------~-------------------------------~------  382 (671)
                      .+++.++.   +.                            +                               +      
T Consensus        86 ~~~I~~v~~~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~~~~~~v~~im~~~~~~v~~  165 (486)
T 2cu0_A           86 VEQVKRVKRAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAREGKLVKELMTKEVITVPE  165 (486)
T ss_dssp             HHHHHHHHTCC---------------------------------------------------------------------
T ss_pred             HHHHHhhcchhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhccCCCCCHHHHccCCCeEECC
Confidence            77654321   00                            0                               0      


Q ss_pred             -----------------c--eee---------------------------------ecccCh---hhHHHHHHcCCcEEE
Q psy3862         383 -----------------H--VAD---------------------------------GGCTSP---GDVAKAMGAGADFVM  407 (671)
Q Consensus       383 -----------------~--v~~---------------------------------~~~~~~---~~~~~l~~aG~d~i~  407 (671)
                                       .  |.+                                 .+.++.   +++..++++|+|.++
T Consensus       166 ~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~~~~~~~g~~~v~~~~~~~~~~~a~~l~~~gvd~lv  245 (486)
T 2cu0_A          166 SIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIV  245 (486)
T ss_dssp             -----------------------------------------CCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEE
T ss_pred             cCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccccccccCCceeecceechhhHHHHHHHHHhcCCceE
Confidence                             0  000                                 000111   233444789999999


Q ss_pred             EccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCe
Q psy3862         408 LGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGK  487 (671)
Q Consensus       408 id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~  487 (671)
                      +| +++||....++.++.++..+          .--+++|++.+.+.++.+. |||.|.||+ |+| ++|++|.+     
T Consensus       246 vd-ta~G~~~~~L~~I~~l~~~~----------~vpvi~k~v~~~~~a~~l~-G~d~v~vg~-g~g-~~~~~r~~-----  306 (486)
T 2cu0_A          246 VD-TAHAHNLKAIKSMKEMRQKV----------DADFIVGNIANPKAVDDLT-FADAVKVGI-GPG-SICTTRIV-----  306 (486)
T ss_dssp             EE-CSCCCCHHHHHHHHHHHHTC----------CSEEEEEEECCHHHHTTCT-TSSEEEECS-SCS-TTBCHHHH-----
T ss_pred             EE-ecCCcEeehhhHHHHHHHHh----------CCccccCCcCCHHHHHHhh-CCCeEEEee-eec-cceeeeEE-----
Confidence            99 69999887777655444432          2224577788888888555 999999996 999 89999875     


Q ss_pred             EEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceE
Q psy3862         488 KVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATF  559 (671)
Q Consensus       488 ~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~f  559 (671)
                         .|+|.||++++.+++..+.++.   .++|   .|++++|++|||+     ||+|++|++++|+|++.         +
T Consensus       307 ---~~~g~~~~~~l~~~~~~~~~~~vpVia~G---Gi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~---------~  371 (486)
T 2cu0_A          307 ---AGVGVPQITAVAMVADRAQEYGLYVIADG---GIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKE---------V  371 (486)
T ss_dssp             ---TCCCCCHHHHHHHHHHHHHHHTCEEEEES---CCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCE---------E
T ss_pred             ---eecCcchHHHHHHHHHHHHHcCCcEEecC---CCCCHHHHHHHHHcCCCceeeChhhhcCccCchhh---------e
Confidence               4789999999998876655431   2444   2799999999999     99999999999999883         1


Q ss_pred             EEecccccccccchhhhcccccccceeeccccccccccccccchhc
Q psy3862         560 IRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT  605 (671)
Q Consensus       560 v~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~  605 (671)
                                      +.+| +++|.||||+|..||.+. +.+||+
T Consensus       372 ----------------~~~g-~~~k~~~g~~~~~a~~~~-~~~r~~  399 (486)
T 2cu0_A          372 ----------------IING-RKYKQYRGMGSLGAMMKG-GAERYY  399 (486)
T ss_dssp             ----------------EETT-EEEEEEECTTSHHHHTC--------
T ss_pred             ----------------eeCC-cEEEEeecCCCHHHHhcc-cccccc
Confidence                            2346 578999999999888643 566775

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.92  E-value=6.9e-26  Score=254.80  Aligned_cols=229  Identities=23%  Similarity=0.223  Sum_probs=175.9

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      ..+|+||||||.|.+|++.| .+|+|.++|+    +.+.+.+|+|+++||++++.+||.+|+++||+++||++.++|++.
T Consensus        27 ~ralt~ddvlLmp~~s~~~p-~~v~l~~eLt----~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~  101 (514)
T 1jcn_A           27 ADDLTYNDFLILPGFIDFIA-DEVDLTSALT----RKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA  101 (514)
T ss_dssp             SSCCCGGGEEECCCCCCSCG-GGCBCCEESS----SSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             CcccccCcEEeccCccCCCc-ceeEEEeecc----CCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence            47999999999999999999 8999999997    678899999999999999999999999999999999999999998


Q ss_pred             HHHhcC---ccc-------------------------------c-----------------------------------c
Q psy3862         372 AFAVQN---PDV-------------------------------I-----------------------------------K  382 (671)
Q Consensus       372 ~~v~~~---~~~-------------------------------~-----------------------------------~  382 (671)
                      ++++++   .+.                               +                                   +
T Consensus       102 ~~v~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~  181 (514)
T 1jcn_A          102 NEVRKVKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTP  181 (514)
T ss_dssp             HHHHHHHTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC----------------C
T ss_pred             HHHHhhhhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCC
Confidence            876321   000                               0                                   0


Q ss_pred             --------------------------c--ee-----------------------------------eecccCh---hhHH
Q psy3862         383 --------------------------H--VA-----------------------------------DGGCTSP---GDVA  396 (671)
Q Consensus       383 --------------------------~--v~-----------------------------------~~~~~~~---~~~~  396 (671)
                                                .  |.                                   +..+..+   ++++
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~~~~~rl~vga~vG~~~~~~~~a~  261 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLD  261 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCCTTCCBCTTSCBCCEEEECSSTTHHHHHH
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhCcchhcccCCceeeeeEecCchhhHHHHH
Confidence                                      0  00                                   0000011   3345


Q ss_pred             HHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCc
Q psy3862         397 KAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHD  475 (671)
Q Consensus       397 ~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s  475 (671)
                      .++++|+|++.|+ ++|||.....+.++.++..+|.+         .|.+|++.+.+.++ +.++|||+|+||+ |+| +
T Consensus       262 ~~~~aG~d~v~i~-~~~G~~~~~~~~i~~i~~~~~~~---------pvi~~~v~t~~~a~~l~~aGad~I~vg~-~~G-~  329 (514)
T 1jcn_A          262 LLTQAGVDVIVLD-SSQGNSVYQIAMVHYIKQKYPHL---------QVIGGNVVTAAQAKNLIDAGVDGLRVGM-GCG-S  329 (514)
T ss_dssp             HHHHTTCSEEEEC-CSCCCSHHHHHHHHHHHHHCTTC---------EEEEEEECSHHHHHHHHHHTCSEEEECS-SCS-C
T ss_pred             HHHHcCCCEEEee-ccCCcchhHHHHHHHHHHhCCCC---------ceEecccchHHHHHHHHHcCCCEEEECC-CCC-c
Confidence            5688999999999 88999766666666555554433         24456678888888 5699999999995 888 7


Q ss_pred             cCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCc
Q psy3862         476 QSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGA  547 (671)
Q Consensus       476 ~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g  547 (671)
                      .|+|+..        .++|.|+.+++..+...+..+.   .++|+   |+++.|+.||++     ||+|+.|.++.|+|+
T Consensus       330 ~~~t~~~--------~~~g~~~~~~~~~~~~~~~~~~ipVia~GG---I~~~~di~kala~GAd~V~iG~~~l~~~e~~~  398 (514)
T 1jcn_A          330 ICITQEV--------MACGRPQGTAVYKVAEYARRFGVPIIADGG---IQTVGHVVKALALGASTVMMGSLLAATTEAPG  398 (514)
T ss_dssp             CBTTBCC--------CSCCCCHHHHHHHHHHHHGGGTCCEEEESC---CCSHHHHHHHHHTTCSEEEESTTTTTSTTSSC
T ss_pred             ccccccc--------cCCCccchhHHHHHHHHHhhCCCCEEEECC---CCCHHHHHHHHHcCCCeeeECHHHHcCCcCCc
Confidence            8999763        4689999988877655544331   23332   789999999999     899999999998777


Q ss_pred             c
Q psy3862         548 S  548 (671)
Q Consensus       548 ~  548 (671)
                      +
T Consensus       399 ~  399 (514)
T 1jcn_A          399 E  399 (514)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.90  E-value=1.3e-23  Score=228.87  Aligned_cols=283  Identities=22%  Similarity=0.298  Sum_probs=195.8

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccC------
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY------  364 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~------  364 (671)
                      .+..++||||+|+|+++.+.+ ++|||+++|-     .+.+..||+.|||+++++++||+++++.|+++++|.+      
T Consensus        32 ~~~~~~fd~v~l~p~~~~~~~-~~vdlst~l~-----g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~  105 (393)
T 2qr6_A           32 ARRTYSLDDISVVSSRRTRSS-KDVDTTWHID-----AYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRH  105 (393)
T ss_dssp             EECCCCGGGEEECCCSCCCCG-GGCBCCEEET-----TEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTC
T ss_pred             cccCCChhhEEEccCCCCCCh-hHCCceeEEc-----ccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceeccc
Confidence            357889999999998777765 9999999983     5789999999999999999999999999999999973      


Q ss_pred             CCHHHHHHHHhcC-------------------c---cc----ccceee--------ecccChhhH-HHHHHcCCcEEEEc
Q psy3862         365 YTLEEWKAFAVQN-------------------P---DV----IKHVAD--------GGCTSPGDV-AKAMGAGADFVMLG  409 (671)
Q Consensus       365 ~~~e~~~~~v~~~-------------------~---~~----~~~v~~--------~~~~~~~~~-~~l~~aG~d~i~id  409 (671)
                      ..++...+++.+.                   +   +.    ++.+..        .+.....+. ..+.++|+|+++++
T Consensus       106 ~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~  185 (393)
T 2qr6_A          106 ADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQ  185 (393)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEE
T ss_pred             CCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEe
Confidence            3444433332211                   1   10    111111        111122333 44468999999998


Q ss_pred             ccc--ccccccccccccccccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeC
Q psy3862         410 GMF--AGHDQSGGELTNIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKD  485 (671)
Q Consensus       410 ~~a--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~  485 (671)
                      +..  .+|......+        ..+.++++.++- ++.|| +.+.+.++ ++++|||+|+||. |+    |+++.+   
T Consensus       186 ~~~~~~~~~~~~~~~--------~~i~~l~~~~~~pvi~gg-i~t~e~a~~~~~~Gad~i~vg~-Gg----~~~~~~---  248 (393)
T 2qr6_A          186 GTLISAEHVNTGGEA--------LNLKEFIGSLDVPVIAGG-VNDYTTALHMMRTGAVGIIVGG-GE----NTNSLA---  248 (393)
T ss_dssp             CSSCCSSCCCC-------------CHHHHHHHCSSCEEEEC-CCSHHHHHHHHTTTCSEEEESC-CS----CCHHHH---
T ss_pred             CCccccccCCCcccH--------HHHHHHHHhcCCCEEECC-cCCHHHHHHHHHcCCCEEEECC-Cc----cccccc---
Confidence            543  2332211111        123344444432 55555 56777777 6799999999985 42    555542   


Q ss_pred             CeEEEEeeCcccHHHHHhhccccccc----------cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccc
Q psy3862         486 GKKVKLFYGMSSTTAMDKHAGGVAEY----------RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKL  550 (671)
Q Consensus       486 g~~~k~g~G~~q~tAi~~~a~~~~~y----------~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i  550 (671)
                           .++|.|+.+++.++...+.+|          ..++|+   |+++.|+.|||+     ||+|+.+.++.|||++. 
T Consensus       249 -----~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GG---I~~~~dv~kalalGA~~V~iG~~~l~~~es~~~~-  319 (393)
T 2qr6_A          249 -----LGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGS---IENSGDVVKAIACGADAVVLGSPLARAEEAAGKG-  319 (393)
T ss_dssp             -----TSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSS---CCSHHHHHHHHHHTCSEEEECGGGGGSTTCTTTT-
T ss_pred             -----CCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECC---CCCHHHHHHHHHcCCCEEEECHHHHcCCCCCCce-
Confidence                 357889999997765542111          123332   788999999999     89999999999887762 


Q ss_pred             cccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEeccc----ccCH
Q psy3862         551 KELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPY----RGDV  626 (671)
Q Consensus       551 ~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~----kG~v  626 (671)
                                                        .+|||++.                ....|+|++.++++    ++.+
T Consensus       320 ----------------------------------~~~g~~~~----------------~~~~~~Gv~~~~~~~~~~~~~~  349 (393)
T 2qr6_A          320 ----------------------------------YFWPAVAA----------------HPRFPRGVVTESVDLDEAAPSL  349 (393)
T ss_dssp             ----------------------------------EECCGGGG----------------CSSSCCCCCEECC----CCCCH
T ss_pred             ----------------------------------EEEecccC----------------cccCCCccccccccccccchhH
Confidence                                              46788775                22468898888765    7788


Q ss_pred             HHHH----------HHHHHHHhhhccccCcccccccccc
Q psy3862         627 NDTV----------QDILGGLRSACTYVGASKLKELPRR  655 (671)
Q Consensus       627 ~~~l----------~~l~gGLrs~m~y~Ga~~l~el~~~  655 (671)
                      .+++          .+|.++||++|+|+|+++++||++.
T Consensus       350 ~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i~el~~~  388 (393)
T 2qr6_A          350 EQILHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKV  388 (393)
T ss_dssp             HHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBHHHHTTC
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHhCCCCHHHHhhc
Confidence            8877          4899999999999999999999864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.89  E-value=1.2e-23  Score=234.99  Aligned_cols=246  Identities=25%  Similarity=0.320  Sum_probs=189.5

Q ss_pred             ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHH
Q psy3862         293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA  372 (671)
Q Consensus       293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~  372 (671)
                      .+||||||||+|++|++.| ++||++++|+    +.+.+.+|||+++||++++.+||.++++.||+|+||+++++|++.+
T Consensus        10 ~~~~~~d~~~~p~~~~~~p-~~v~~~t~lt----~~l~~~~Piv~a~M~~vt~~eLa~av~~~Gg~G~i~~~~~~e~~~~   84 (491)
T 1zfj_A           10 KGYTFDDVLLIPAESHVLP-NEVDLKTKLA----DNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQAE   84 (491)
T ss_dssp             CCCCGGGEEECCCCCCSCG-GGCCCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHH
T ss_pred             cCCChhhEEeccCcCCcCc-cccccchhhh----hcceecCceEecCchhccHHHHHHHHHHcCCceEEeCCCCHHHHHH
Confidence            7999999999999999999 7999999998    5788999999999999999999999999999999999999998877


Q ss_pred             HHhcCcc--------c--------------------------cc------------------------------------
Q psy3862         373 FAVQNPD--------V--------------------------IK------------------------------------  382 (671)
Q Consensus       373 ~v~~~~~--------~--------------------------~~------------------------------------  382 (671)
                      ++.++.+        .                          +.                                    
T Consensus        85 ~i~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~  164 (491)
T 1zfj_A           85 EVRKVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLV  164 (491)
T ss_dssp             HHHHHHHHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCC
T ss_pred             HHHHHhhHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhccCCCcHHHHcCCCCCE
Confidence            7654200        0                          00                                    


Q ss_pred             ---------------------c--eee---------------------------------ecccC-----hhhHHHHHHc
Q psy3862         383 ---------------------H--VAD---------------------------------GGCTS-----PGDVAKAMGA  401 (671)
Q Consensus       383 ---------------------~--v~~---------------------------------~~~~~-----~~~~~~l~~a  401 (671)
                                           .  |.+                                 .+.++     .++...++++
T Consensus       165 ~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~  244 (491)
T 1zfj_A          165 TAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEA  244 (491)
T ss_dssp             CEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHc
Confidence                                 0  000                                 00011     1344556789


Q ss_pred             CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862         402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                      |+|.|+++ +++||....++.++.++..+|.+.        + .+|++.+.+.++ ++++|||+|.||+ |+| +.|+|+
T Consensus       245 G~d~ivi~-~a~g~~~~~~~~i~~l~~~~p~~p--------v-i~G~v~t~~~a~~~~~~Gad~I~vg~-g~g-~~~~tr  312 (491)
T 1zfj_A          245 GADAIVID-TAHGHSAGVLRKIAEIRAHFPNRT--------L-IAGNIATAEGARALYDAGVDVVKVGI-GPG-SICTTR  312 (491)
T ss_dssp             TCSEEEEC-CSCTTCHHHHHHHHHHHHHCSSSC--------E-EEEEECSHHHHHHHHHTTCSEEEECS-SCC-TTBCHH
T ss_pred             CCCeEEEe-eecCcchhHHHHHHHHHHHCCCCc--------E-eCCCccCHHHHHHHHHcCCCEEEECc-cCC-cceEEe
Confidence            99999999 588998766666655555554332        4 477788888887 6799999999996 999 899998


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKE  552 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e  552 (671)
                      ..        .++|.|+..++.+++..+.+.   ..++|+   |+++.|+.||++     ||+|+++.+++|++++.+  
T Consensus       313 ~~--------~~~~~p~~~~l~~~~~~~~~~~ipvia~GG---i~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~--  379 (491)
T 1zfj_A          313 VV--------AGVGVPQVTAIYDAAAVAREYGKTIIADGG---IKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETE--  379 (491)
T ss_dssp             HH--------TCCCCCHHHHHHHHHHHHHHTTCEEEEESC---CCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEE--
T ss_pred             ee--------cCCCCCcHHHHHHHHHHHhhcCCCEEeeCC---CCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEE--
Confidence            64        357899999998876543221   133343   789999999999     899999999998888731  


Q ss_pred             cCCcceEEEecccccccccchhhhcccccccceeeccccc
Q psy3862         553 LPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKL  592 (671)
Q Consensus       553 ~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~  592 (671)
                                             +.+| +.+|.||||+|.
T Consensus       380 -----------------------~~~g-~~~k~~~g~~~~  395 (491)
T 1zfj_A          380 -----------------------IYQG-RKYKTYRGMGSI  395 (491)
T ss_dssp             -----------------------EETT-EEEEEEECTTSH
T ss_pred             -----------------------EECC-EEEEEEecccCH
Confidence                                   1235 578999999997

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.89  E-value=1.4e-23  Score=234.84  Aligned_cols=229  Identities=25%  Similarity=0.327  Sum_probs=174.7

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      ..+||||||||+|.+|++.|+ +||++++|+    +.+.+.+|+|+++||++++.+||++|++.||+|+||++.++|++.
T Consensus        14 ~~~~~~~dvll~p~~s~~~p~-~v~~~~eLt----~~~~l~iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~~e~~~   88 (494)
T 1vrd_A           14 KEALTFDDVLLVPQYSEVLPK-DVKIDTRLT----RQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQA   88 (494)
T ss_dssp             CCCCCGGGEEECCCCCCCCGG-GSCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHH
T ss_pred             ccccccccEEeccccccCCCC-ceEEEehhh----CCCccCceeEecchHHHhHHHHHHHHHHcCCceEEecCCChHHHH
Confidence            568999999999999999996 999999998    578999999999999999999999999999999999999999987


Q ss_pred             HHHhcC---ccc----------------------------cc---------------ce---------------------
Q psy3862         372 AFAVQN---PDV----------------------------IK---------------HV---------------------  384 (671)
Q Consensus       372 ~~v~~~---~~~----------------------------~~---------------~v---------------------  384 (671)
                      +++.++   .+.                            ++               .+                     
T Consensus        89 ~~v~~v~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~  168 (494)
T 1vrd_A           89 RQVSIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKKIKDLMTPREKLI  168 (494)
T ss_dssp             HHHHHHHTC-----------------------------------------------------------------------
T ss_pred             HHHHhhhhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcCCCCcHHHHhCCCCCCe
Confidence            765332   110                            00               00                     


Q ss_pred             ----------------------------------------------------------eeecccC-----hhhHHHHHHc
Q psy3862         385 ----------------------------------------------------------ADGGCTS-----PGDVAKAMGA  401 (671)
Q Consensus       385 ----------------------------------------------------------~~~~~~~-----~~~~~~l~~a  401 (671)
                                                                                ...++++     .+++..++++
T Consensus       169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~a  248 (494)
T 1vrd_A          169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKA  248 (494)
T ss_dssp             ----------------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccccccccchhhhccccccCcCHhHHHHHHHHHHh
Confidence                                                                      0000011     1344556899


Q ss_pred             CCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862         402 GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       402 G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                      |+|+++++ +++||.....+.++.++..+|.+.        ++. |++.+.+.++ +.++|||+|.||. ++| +.|+++
T Consensus       249 Gvd~v~i~-~~~G~~~~~~e~i~~i~~~~p~~p--------vi~-g~~~t~e~a~~l~~~G~d~I~v~~-~~G-~~~~~~  316 (494)
T 1vrd_A          249 GVDVIVID-TAHGHSRRVIETLEMIKADYPDLP--------VVA-GNVATPEGTEALIKAGADAVKVGV-GPG-SICTTR  316 (494)
T ss_dssp             TCSEEEEC-CSCCSSHHHHHHHHHHHHHCTTSC--------EEE-EEECSHHHHHHHHHTTCSEEEECS-SCS-TTCHHH
T ss_pred             CCCEEEEE-ecCCchHHHHHHHHHHHHHCCCce--------EEe-CCcCCHHHHHHHHHcCCCEEEEcC-CCC-cccccc
Confidence            99999998 788987767777666666554331        333 5567777777 5699999999996 888 789887


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      ..        .++|.|+.+++.+++..+.++   ..++|+   |+++.|+.||++     ||+|+.|.++.|+|++
T Consensus       317 ~~--------~~~g~p~~~~l~~v~~~~~~~~ipvia~GG---I~~~~di~kala~GAd~V~iGr~~l~~~e~~~~  381 (494)
T 1vrd_A          317 VV--------AGVGVPQLTAVMECSEVARKYDVPIIADGG---IRYSGDIVKALAAGAESVMVGSIFAGTEEAPGE  381 (494)
T ss_dssp             HH--------HCCCCCHHHHHHHHHHHHHTTTCCEEEESC---CCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSE
T ss_pred             cc--------CCCCccHHHHHHHHHHHHhhcCCCEEEECC---cCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcc
Confidence            53        357889998888766544332   134443   789999999999     8999999999988877

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=99.81  E-value=2.1e-20  Score=204.25  Aligned_cols=228  Identities=22%  Similarity=0.286  Sum_probs=166.9

Q ss_pred             ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHH
Q psy3862         293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA  372 (671)
Q Consensus       293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~  372 (671)
                      .+++||||+|+|+++++.+ ++|||+++|.    +.+.+..||+.|||+++++.+||.++++.||+++||+++++|++.+
T Consensus         8 ~~~~fd~v~l~p~~~~~~~-~~vdlst~l~----~g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~~~~s~e~~~~   82 (404)
T 1eep_A            8 EALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRK   82 (404)
T ss_dssp             CCCCGGGEEECCCCCCSCG-GGCCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred             cCCCcccEEEccCCCCcCc-cccccceecc----CCcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHH
Confidence            7899999999999999887 8999999985    3578999999999999999999999999999999999999999888


Q ss_pred             HHhcCccc----------------------------------------ccc----------eeeecccCh---hhHHHHH
Q psy3862         373 FAVQNPDV----------------------------------------IKH----------VADGGCTSP---GDVAKAM  399 (671)
Q Consensus       373 ~v~~~~~~----------------------------------------~~~----------v~~~~~~~~---~~~~~l~  399 (671)
                      ++.+.++.                                        .+.          +.+..+..+   +++..++
T Consensus        83 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~  162 (404)
T 1eep_A           83 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV  162 (404)
T ss_dssp             HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred             HHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCChhHHHHHHHHH
Confidence            77532110                                        010          111112222   3345558


Q ss_pred             HcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCC
Q psy3862         400 GAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSG  478 (671)
Q Consensus       400 ~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ct  478 (671)
                      ++|+|++.|+ +++|+.....++++.++..+|.+        .++. +++.+.+.++ +.++|||+|.||. ++| +.|+
T Consensus       163 ~~G~d~i~i~-~~~g~~~~~~e~i~~ir~~~~~~--------pviv-~~v~~~~~a~~a~~~Gad~I~vg~-~~G-~~~~  230 (404)
T 1eep_A          163 KAHVDILVID-SAHGHSTRIIELIKKIKTKYPNL--------DLIA-GNIVTKEAALDLISVGADCLKVGI-GPG-SICT  230 (404)
T ss_dssp             HTTCSEEEEC-CSCCSSHHHHHHHHHHHHHCTTC--------EEEE-EEECSHHHHHHHHTTTCSEEEECS-SCS-TTSH
T ss_pred             HCCCCEEEEe-CCCCChHHHHHHHHHHHHHCCCC--------eEEE-cCCCcHHHHHHHHhcCCCEEEECC-CCC-cCcC
Confidence            8999999997 67777544455544444433221        1333 4467777777 5799999999985 888 6888


Q ss_pred             CcEEEeCCeEEEEeeCcccHHHHHhhccccccc---cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         479 GELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY---RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       479 t~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y---~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      ++..        -+.|.|+.+++.++...+...   ..++|+   |.+..|+.|+++     ||+|+.+..+.|+++.
T Consensus       231 ~~~~--------~~~g~p~~~~l~~v~~~~~~~~ipVia~GG---I~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~  297 (404)
T 1eep_A          231 TRIV--------AGVGVPQITAICDVYEACNNTNICIIADGG---IRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE  297 (404)
T ss_dssp             HHHH--------HCCCCCHHHHHHHHHHHHTTSSCEEEEESC---CCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSC
T ss_pred             cccc--------CCCCcchHHHHHHHHHHHhhcCceEEEECC---CCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcc
Confidence            7642        246788888887765432211   122332   688899999999     8999999999988776

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=1.3e-18  Score=189.49  Aligned_cols=220  Identities=21%  Similarity=0.215  Sum_probs=143.8

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCC------
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY------   89 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~------   89 (671)
                      ...++|||++|+|++..+ +.+++||+++|     .+++++.||+.+||+++++.++|.++++.|++|+++.++      
T Consensus        33 ~~~~~fd~v~l~p~~~~~-~~~~vdlst~l-----~g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~  106 (393)
T 2qr6_A           33 RRTYSLDDISVVSSRRTR-SSKDVDTTWHI-----DAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHA  106 (393)
T ss_dssp             ECCCCGGGEEECCCSCCC-CGGGCBCCEEE-----TTEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCS
T ss_pred             ccCCChhhEEEccCCCCC-ChhHCCceeEE-----cccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccC
Confidence            467899999999985555 46899999999     488999999999999999999999999999999999865      


Q ss_pred             CHHHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHh-CCCceEEEEE
Q psy3862          90 TLEEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREM-YPKHVIIAGN  167 (671)
Q Consensus        90 ~~Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~-~P~~~li~g~  167 (671)
                      .++...+.+.+.. .+..++    +     ...+..+.- .+           ...+...+.++++++. +|....+.+.
T Consensus       107 ~~~~~~eeia~~~~~~d~~~----g-----~~~~~q~~~-~~-----------~d~~~~~~~i~~~~~~g~~v~~~v~~~  165 (393)
T 2qr6_A          107 DLDEAIAKVIAAYEEGDQAA----A-----TRTLQELHA-AP-----------LDTELLSERIAQVRDSGEIVAVRVSPQ  165 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH----H-----HHHHHHHHH-SC-----------CCHHHHHHHHHHHHHTTSCCEEEECTT
T ss_pred             CchhHHHHHHHHHHhcCCCc----c-----chhhhhccc-cc-----------CCHHHHHHHHHHHhhcCCeEEEEeCCc
Confidence            2322222221110 000010    0     001111100 00           0123344555655543 3432222211


Q ss_pred             eccHHHHHHHHHCCCcEEEECcCC---CceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         168 VVTGEMVEELILSGADVIKVGIGP---GSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       168 v~t~e~a~~Li~AGaD~IvVdga~---G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .+.+.++.+.++|+|++.+++..   ++..     .......+....+  .+| ++||+.|.+.++.++++|||+|.||
T Consensus       166 -~~~e~a~~~~~agad~i~i~~~~~~~~~~~-----~~~~~~~i~~l~~~~~~pvi~ggi~t~e~a~~~~~~Gad~i~vg  239 (393)
T 2qr6_A          166 -NVREIAPIVIKAGADLLVIQGTLISAEHVN-----TGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVG  239 (393)
T ss_dssp             -THHHHHHHHHHTTCSEEEEECSSCCSSCCC-----C-----CHHHHHHHCSSCEEEECCCSHHHHHHHHTTTCSEEEES
T ss_pred             -cHHHHHHHHHHCCCCEEEEeCCccccccCC-----CcccHHHHHHHHHhcCCCEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence             24677888889999999987532   1210     0000001111111  356 5799999999999999999999997


Q ss_pred             ccCCCccccceecccCcchhhhHHHHHHHh
Q psy3862         242 IGPGSVCTTRLKTGVGYPQFSAVLECADAA  271 (671)
Q Consensus       242 ~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~  271 (671)
                      .|+   |++|.+.+.|.|+++++.++++++
T Consensus       240 ~Gg---~~~~~~~~~g~~~~~~l~~v~~~~  266 (393)
T 2qr6_A          240 GGE---NTNSLALGMEVSMATAIADVAAAR  266 (393)
T ss_dssp             CCS---CCHHHHTSCCCCHHHHHHHHHHHH
T ss_pred             CCc---ccccccCCCCCChHHHHHHHHHHH
Confidence            654   999999999999999999999875

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.80  E-value=3.6e-20  Score=197.90  Aligned_cols=211  Identities=20%  Similarity=0.274  Sum_probs=152.2

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      +..++||||+|+|+++++.++++|||+++|.     .+.+..||+.|+|.++++.+||.++++.||+++++.. +++.+.
T Consensus        11 ~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~-----g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~-~~~~~~   84 (336)
T 1ypf_A           11 GNVFDYEDIQLIPAKCIVNSRSECDTTVTLG-----KHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRF-QPEKRI   84 (336)
T ss_dssp             -CCCCGGGEEECCCCCCCSSGGGCBCCEEET-----TEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCS-SGGGHH
T ss_pred             cccCCcceEEEecccCCCCCcccCcceEEEC-----CEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCC-CCHHHH
Confidence            5678999999999999999999999999996     5789999999999999999999999999999999976 456666


Q ss_pred             HHHhcCcccccceeeecccChhhH---HHHHHcC--CcEEEEccccccccccccccccccccccccccccccccC-ceee
Q psy3862         372 AFAVQNPDVIKHVADGGCTSPGDV---AKAMGAG--ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVD  445 (671)
Q Consensus       372 ~~v~~~~~~~~~v~~~~~~~~~~~---~~l~~aG--~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~  445 (671)
                      +++++.++.--.+.+.-+..++++   ..+.++|  +|++.++ .++|+.....+.++          ++++.++ ..+.
T Consensus        85 ~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~-~~~G~~~~~~~~i~----------~lr~~~~~~~vi  153 (336)
T 1ypf_A           85 SFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITID-IAHGHSNAVINMIQ----------HIKKHLPESFVI  153 (336)
T ss_dssp             HHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEE-CSSCCSHHHHHHHH----------HHHHHCTTSEEE
T ss_pred             HHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEE-CCCCCcHHHHHHHH----------HHHHhCCCCEEE
Confidence            666553321001222223344443   3447889  9999998 66775444444443          4444443 2445


Q ss_pred             ccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcc--cHHHHHhhccccccccccCCceEeee
Q psy3862         446 GGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMS--STTAMDKHAGGVAEYRAAEGKTVQVP  522 (671)
Q Consensus       446 gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~--q~tAi~~~a~~~~~y~~~~G~~v~i~  522 (671)
                      .|++.+.+.++ +.++|||+|.|+. .+| ..|+++..        .|.|.|  +..++.+++.+.+--..++|+   |+
T Consensus       154 ~G~v~s~e~A~~a~~aGad~Ivvs~-hgG-~~~~~~~~--------~~~g~~g~~~~~l~~v~~~~~ipVIa~GG---I~  220 (336)
T 1ypf_A          154 AGNVGTPEAVRELENAGADATKVGI-GPG-KVCITKIK--------TGFGTGGWQLAALRWCAKAASKPIIADGG---IR  220 (336)
T ss_dssp             EEEECSHHHHHHHHHHTCSEEEECS-SCS-TTCHHHHH--------HSCSSTTCHHHHHHHHHHTCSSCEEEESC---CC
T ss_pred             ECCcCCHHHHHHHHHcCCCEEEEec-CCC-ceeecccc--------cCcCCchhHHHHHHHHHHHcCCcEEEeCC---CC
Confidence            67778888888 6799999999986 666 67776542        356777  888888766543211234443   78


Q ss_pred             cCCCHHHHHH
Q psy3862         523 YRGDVNDTVQ  532 (671)
Q Consensus       523 ~~Gdi~kAia  532 (671)
                      +..|+.||++
T Consensus       221 ~g~Dv~kala  230 (336)
T 1ypf_A          221 TNGDVAKSIR  230 (336)
T ss_dssp             STHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999999997

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.59  E-value=7.8e-15  Score=158.47  Aligned_cols=167  Identities=19%  Similarity=0.198  Sum_probs=112.2

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccH------HHHHHHHHcCCeEEeecCC--
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTF------EMAKHLAKHGLFTTIHKYY--   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~------~lA~Ala~~gglgvIh~n~--   89 (671)
                      ..+||||.|+|+.+|.++.++|||+++|.     +.+|+.|+++++|++++..      .+|.+.++.|-...+..+.  
T Consensus        26 ~~~~~~v~l~~~~lp~~~~~~vd~st~~~-----g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~  100 (368)
T 3vkj_A           26 STFLNDVILVHQGFPGISFSEINTKTKFF-----RKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVA  100 (368)
T ss_dssp             CCSGGGEEECCCSSCBSBGGGCBCCEEET-----TEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHH
T ss_pred             CCCcceEEEEcCCCCccCcccccceeEEC-----CEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhc
Confidence            46799999999999999999999999994     8999999999999998753      3788666666333343331  


Q ss_pred             --CHHHHHHh--hh-cCcccccceEEec------C-CChhhHHHHHHHHHhCCCceEEEeeccC------CCC--h-HHH
Q psy3862          90 --TLEEWKAF--AV-QNPDVIKHVAVSS------G-ISAKDLAGLKEILAALPEIEYICLDVAN------GYT--Q-TFV  148 (671)
Q Consensus        90 --~~Eeq~~~--i~-~~p~~~~~~~v~~------G-~~~~d~~rl~~l~~a~~~~d~Ivld~a~------G~~--~-~~~  148 (671)
                        .++.+..+  ++ .+|+.  ++..++      + .+++...++.+++++  +...++++..+      |+.  . .+.
T Consensus       101 l~~~~~~~s~~~vr~~ap~~--~~~anlg~~ql~~~~~~~~~~~av~~~~a--~al~Ihln~~~~~~~p~g~~~~~~~~~  176 (368)
T 3vkj_A          101 IEKAEARESFAIVRKVAPTI--PIIANLGMPQLVKGYGLKEFQDAIQMIEA--DAIAVHLNPAQEVFQPEGEPEYQIYAL  176 (368)
T ss_dssp             HHCGGGSHHHHHHHHHCSSS--CEEEEEEGGGGGTTCCHHHHHHHHHHTTC--SEEEEECCHHHHHHSSSCCCBCBTHHH
T ss_pred             cCCHHHHhhHHHHHHhCcCc--ceecCcCeeecCCCCCHHHHHHHHHHhcC--CCeEEEecchhhhhCCCCCchhhHHHH
Confidence              12322233  23 24542  221111      2 344445555555544  55666665543      332  1 478


Q ss_pred             HHHHHHHHhC--CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc
Q psy3862         149 DFVRRIREMY--PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS  193 (671)
Q Consensus       149 ~~ik~lr~~~--P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~  193 (671)
                      +.++++++..  |...+.+|+..+.+.|+.|.++|||+|++++.+|+
T Consensus       177 ~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt  223 (368)
T 3vkj_A          177 EKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT  223 (368)
T ss_dssp             HHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence            8899887754  54444456667899999999999999999888775

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.56  E-value=7.3e-15  Score=158.35  Aligned_cols=217  Identities=12%  Similarity=0.133  Sum_probs=132.7

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcccc------HHHHHHHHHcCCeEEeecCC-C
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHGLFTTIHKYY-T   90 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~------~~lA~Ala~~gglgvIh~n~-~   90 (671)
                      ..+|||+.|+|+.+|..+.++|||+++|.     +.+++.||++++|++++.      ..+|.+.++.|-.-.+..+. .
T Consensus        53 ~~~fd~i~l~~~~lP~~~~~~vd~st~i~-----g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~  127 (365)
T 3sr7_A           53 YNSFDDIELIHHSLPDYDLAEIDLSTHFA-----GQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA  127 (365)
T ss_dssp             CCGGGGEEECCCSSCCSCGGGCCCCEEET-----TEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------
T ss_pred             CCCcceEEEECCCCCcCCcccccceEEEC-----CEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc
Confidence            47899999999999998899999999994     789999999999998764      35888766666433333221 1


Q ss_pred             HHH--HHHh-hh-cCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeecc------CCC--ChHHHHHHHHHHHhC
Q psy3862          91 LEE--WKAF-AV-QNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVA------NGY--TQTFVDFVRRIREMY  158 (671)
Q Consensus        91 ~Ee--q~~~-i~-~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a------~G~--~~~~~~~ik~lr~~~  158 (671)
                      +|+  +..+ +. ..|+...-..++.+.+.++..++.+.+++  +...+.++..      .|+  ...|.+.++++++..
T Consensus       128 le~~~~~~~~v~r~~P~~~~ianig~~~~~e~~~~~ve~~~a--dal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~  205 (365)
T 3sr7_A          128 LKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQP--LFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL  205 (365)
T ss_dssp             -----------------CCEEEEEETTSCHHHHHHHHHHHCC--SCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC
T ss_pred             ccCccccceEehhhCCCCcEEEEeCCCCCHHHHHHHHHhcCC--CEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh
Confidence            221  1222 22 23432211122333444444455455544  5555666654      233  357889999998765


Q ss_pred             --CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEE--EEec-------cc--CCcchhhhhcc----ccC--Ccc
Q psy3862         159 --PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT--TRLK-------NK--TSDFFLIQFYS----CIP--QAG  219 (671)
Q Consensus       159 --P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~--t~v~-------~~--~~~~~~i~~i~----~~p--~aG  219 (671)
                        |...+.+|...+.+.|+.|.++|||+|++++.+|+...  ...+       ..  .|+...+..+.    .+|  +.|
T Consensus       206 ~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~G  285 (365)
T 3sr7_A          206 QLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASG  285 (365)
T ss_dssp             CSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeC
Confidence              44444333337899999999999999999998887531  1111       01  23333333332    345  799


Q ss_pred             ccccHHHHHHHHHcCCCEEEEc
Q psy3862         220 NVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       220 nV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ||-|+..+..++++|||+|.+|
T Consensus       286 GI~~g~Dv~KaLalGAdaV~ig  307 (365)
T 3sr7_A          286 GIRHPLDIIKALVLGAKAVGLS  307 (365)
T ss_dssp             SCCSHHHHHHHHHHTCSEEEES
T ss_pred             CCCCHHHHHHHHHcCCCEEEEC
Confidence            9999999999999999999998

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.41  E-value=2.8e-12  Score=136.30  Aligned_cols=202  Identities=17%  Similarity=0.210  Sum_probs=139.1

Q ss_pred             cceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee-cCCCHHHHHHhhhcCcc-cccceEEecCC-
Q psy3862          38 EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPD-VIKHVAVSSGI-  114 (671)
Q Consensus        38 ~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh-~n~~~Eeq~~~i~~~p~-~~~~~~v~~G~-  114 (671)
                      ...++|.|+    +.+.++.||+.++|.+++..+++.+++++|++|++. .++++|+..+.+++.+. +..|+.++... 
T Consensus        12 ~~~~~t~~~----~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~   87 (326)
T 3bo9_A           12 HMTVRTRVT----DLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILV   87 (326)
T ss_dssp             CCCCCCHHH----HHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETT
T ss_pred             ceeecchhH----HhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence            344666676    678899999999999999999999999999999985 45688876655543322 23567765444 


Q ss_pred             ChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCC
Q psy3862         115 SAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPG  192 (671)
Q Consensus       115 ~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G  192 (671)
                      .++..+.++.+++.  +++++.+.  .+.+..+++.++   +.   ..++...+.+.+.++.+.++|+|.|++++  ++|
T Consensus        88 ~~~~~~~~~~~~~~--g~d~V~l~--~g~p~~~~~~l~---~~---g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG  157 (326)
T 3bo9_A           88 SPWADDLVKVCIEE--KVPVVTFG--AGNPTKYIRELK---EN---GTKVIPVVASDSLARMVERAGADAVIAEGMESGG  157 (326)
T ss_dssp             STTHHHHHHHHHHT--TCSEEEEE--SSCCHHHHHHHH---HT---TCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSE
T ss_pred             CCCHHHHHHHHHHC--CCCEEEEC--CCCcHHHHHHHH---Hc---CCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCc
Confidence            33333556666676  66777764  345655544444   32   23444567889999999999999999987  455


Q ss_pred             ceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHH
Q psy3862         193 SVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLEC  267 (671)
Q Consensus       193 ~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~  267 (671)
                      |.-      ..+++.+++.+.   .+|  ++|||.|++.+.+++++|||||.||        |+....-..+--..+.+.
T Consensus       158 ~~G------~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~GA~gV~vG--------s~~~~~~e~~~~~~~k~~  223 (326)
T 3bo9_A          158 HIG------EVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQMG--------TRFVASVESDVHPVYKEK  223 (326)
T ss_dssp             ECC------SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES--------HHHHTBSSCCSCHHHHHH
T ss_pred             cCC------CccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCEEEec--------hHHHcCccccccHHHHHH
Confidence            420      123444444442   356  7999999999999999999999999        666655544333333333

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=99.35  E-value=2.1e-12  Score=163.71  Aligned_cols=215  Identities=11%  Similarity=0.055  Sum_probs=144.5

Q ss_pred             CCCcceeeeeeecccCCCcccCceEEecCCC-ccccHHHHHHHHHcCCeEEe--ecCCCHHHHHHhhhcCccc---ccce
Q psy3862          35 SRSEVDITRTFTFRNSGKTYQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTI--HKYYTLEEWKAFAVQNPDV---IKHV  108 (671)
Q Consensus        35 ~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~-~vt~~~lA~Ala~~gglgvI--h~n~~~Eeq~~~i~~~p~~---~~~~  108 (671)
                      |..+++++|+|+    +.+. ++||+.++|+ ++++.+||.|++++||+|+|  |.++++|++.+.+.+....   .+++
T Consensus       566 ~~~~~~l~t~~t----~~lg-~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~~~~~~~p~  640 (2060)
T 2uva_G          566 SVGQTFVDTKMS----RLLG-VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEKAIPPGRGI  640 (2060)
T ss_dssp             TTCCEEEECHHH----HHHT-SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGGGSCTTCCE
T ss_pred             CCCceecchhhh----hccc-cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHhhcccCCCe
Confidence            446788999998    4455 8999999999 68899999999999999999  7889999888777643322   2567


Q ss_pred             EEecCC-ChhhH----HHHHHHHHhCCCceEEEeeccCCCChH--HHHHHHHHHHhCCCceEEEEEecc----HHHHHHH
Q psy3862         109 AVSSGI-SAKDL----AGLKEILAALPEIEYICLDVANGYTQT--FVDFVRRIREMYPKHVIIAGNVVT----GEMVEEL  177 (671)
Q Consensus       109 ~v~~G~-~~~d~----~rl~~l~~a~~~~d~Ivld~a~G~~~~--~~~~ik~lr~~~P~~~li~g~v~t----~e~a~~L  177 (671)
                      +++.-+ .+...    +.+..+++.  ++++..+....|.+..  +.+.+++.   .  ..++ ..+.+    .+.+.++
T Consensus       641 gvN~~~~~p~~~~~~~~~~~~~~~~--gv~i~gv~~~~G~p~~e~~~~~l~~~---g--i~~i-~~v~~~~~a~~~v~~l  712 (2060)
T 2uva_G          641 TVNLIYVNPRAMGWQIPLLGRLRAD--GVPIEGLTIGAGVPSIEVANEYIQTL---G--IRHI-SFKPGSVDAIQQVINI  712 (2060)
T ss_dssp             EEEEETTCTTHHHHHHHHHHHHHTT--TCCEEEEEEESSCCCHHHHHHHHHHS---C--CSEE-EECCCSHHHHHHHHHH
T ss_pred             EecccccCcccchhHHHHHHHHHHc--CCCcceEeecCCCCCHHHHHHHHHHc---C--CeEE-EecCCHHHHHHHHHHH
Confidence            776543 33322    345555555  5555223335566533  55666542   1  1122 22322    3444566


Q ss_pred             HHCCCcEEE---ECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHH-----------HcCCC
Q psy3862         178 ILSGADVIK---VGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELI-----------LSGAD  236 (671)
Q Consensus       178 i~AGaD~Iv---Vdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li-----------~aGAd  236 (671)
                      .++|+|+|+   ++|  ++||.-...+.  .+.+.+++.|.   .+|  +||||+|++++.+++           .+|||
T Consensus       713 ~~aG~D~iV~~q~~G~eaGGH~g~~d~~--~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAd  790 (2060)
T 2uva_G          713 AKANPTFPIILQWTGGRGGGHHSFEDFH--QPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFD  790 (2060)
T ss_dssp             HHHCTTSCEEEEECCTTSSSSCCSCCSH--HHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCS
T ss_pred             HHcCCCEEEEeeeEcccCCCCCCccccc--chHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCC
Confidence            999999999   887  66663110000  12233444442   245  799999999999999           99999


Q ss_pred             EEEEcccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862         237 VIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAH  272 (671)
Q Consensus       237 gvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~  272 (671)
                      ||+||        ||.++....|--.++-+.--.+.
T Consensus       791 gV~~G--------T~f~~t~Ea~~s~~~K~~lv~a~  818 (2060)
T 2uva_G          791 GCMFG--------SRMMTAKEAHTSKQAKQAIVDAP  818 (2060)
T ss_dssp             CEEES--------GGGGGBTTSCCCHHHHHHHHTSC
T ss_pred             EEEEc--------hhhhcCcCCCCCHHHHHHHHhCC
Confidence            99999        99999988887766666654444

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=99.28  E-value=3.8e-11  Score=127.38  Aligned_cols=186  Identities=18%  Similarity=0.164  Sum_probs=124.8

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec-CCC-HHHHHHhhhcCcc-cccceEEecCCC----hhhH-HHH
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYT-LEEWKAFAVQNPD-VIKHVAVSSGIS----AKDL-AGL  122 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~-~Eeq~~~i~~~p~-~~~~~~v~~G~~----~~d~-~rl  122 (671)
                      +.+.+++||+.++|.++++.+++.+++++||+|+++. +++ +++..+.+++... ...|+.++..+.    ..++ +.+
T Consensus        10 ~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~   89 (328)
T 2gjl_A           10 ETFGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYR   89 (328)
T ss_dssp             HHHTCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHH
T ss_pred             HHhCCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHH
Confidence            5667899999999999999999999999999999975 444 6665444432211 223555543332    2333 456


Q ss_pred             HHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc--CCCceEEEEec
Q psy3862         123 KEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI--GPGSVCTTRLK  200 (671)
Q Consensus       123 ~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~  200 (671)
                      +.+.+.  +++++.+.  .+.+..+++.   +++.   ...+...+.+.+.++.+.++|+|.|++++  ++||.-..   
T Consensus        90 ~~~~~~--g~d~V~~~--~g~p~~~~~~---l~~~---gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~---  156 (328)
T 2gjl_A           90 AAIIEA--GIRVVETA--GNDPGEHIAE---FRRH---GVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGED---  156 (328)
T ss_dssp             HHHHHT--TCCEEEEE--ESCCHHHHHH---HHHT---TCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBCCCSS---
T ss_pred             HHHHhc--CCCEEEEc--CCCcHHHHHH---HHHc---CCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcCCCCc---
Confidence            666666  67777765  2345444444   4332   23444567889999999999999999977  34452000   


Q ss_pred             ccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCc
Q psy3862         201 NKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGY  258 (671)
Q Consensus       201 ~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~  258 (671)
                       ..+++.+++.+.   .+|  ++|||.+++.+.+++++|||||.||        |+.......
T Consensus       157 -~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~vG--------s~~~~~~e~  210 (328)
T 2gjl_A          157 -DIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMG--------TRFLATREC  210 (328)
T ss_dssp             -CCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEES--------HHHHTSSSS
T ss_pred             -cccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC--------HHHHcCccc
Confidence             112334444442   356  7999999999999999999999999        666655443

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=99.25  E-value=8.4e-11  Score=125.10  Aligned_cols=197  Identities=19%  Similarity=0.167  Sum_probs=133.1

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHHHHhhhcCcc-cccceEEecCC-ChhhHHHHHHHHH
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEWKAFAVQNPD-VIKHVAVSSGI-SAKDLAGLKEILA  127 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq~~~i~~~p~-~~~~~~v~~G~-~~~d~~rl~~l~~  127 (671)
                      +.+.++.||+.++|.+++..+++.+++++|++|++.. ++++++..+.+.+... +..++.++.-. .+.-.+.++.+.+
T Consensus         7 ~~l~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~   86 (332)
T 2z6i_A            7 ELLKIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIE   86 (332)
T ss_dssp             HHHTCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHH
T ss_pred             HHhCCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHH
Confidence            4566899999999999999999999999999999854 5677765554433221 23466665444 2322244555666


Q ss_pred             hCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcC--CCceEEEEecccCCc
Q psy3862         128 ALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG--PGSVCTTRLKNKTSD  205 (671)
Q Consensus       128 a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga--~G~~~~t~v~~~~~~  205 (671)
                      +  +.+.+.+..  +++..+++.+++   .   ...+...+.+.+.++.+.++|+|+|++++.  +||.-      ..++
T Consensus        87 ~--g~d~V~~~~--g~p~~~i~~l~~---~---g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~g------~~~~  150 (332)
T 2z6i_A           87 E--GVKVVTTGA--GNPSKYMERFHE---A---GIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHIG------KLTT  150 (332)
T ss_dssp             T--TCSEEEECS--SCGGGTHHHHHH---T---TCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECC------SSCH
T ss_pred             C--CCCEEEECC--CChHHHHHHHHH---c---CCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCCC------CccH
Confidence            6  677777653  455555555543   2   233344567889999999999999999873  44420      1233


Q ss_pred             chhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHh
Q psy3862         206 FFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAA  271 (671)
Q Consensus       206 ~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~  271 (671)
                      +.+++.+.   .+|  ++|||.|++.+.+++++|||||.||        |+.+..-..|-..++.+....+
T Consensus       151 ~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~vG--------s~~l~~~e~~~~~~~k~~~~~~  213 (332)
T 2z6i_A          151 MTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQVG--------TRFVVAKESNAHPNYKEKILKA  213 (332)
T ss_dssp             HHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEEC--------HHHHTBTTCCSCHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEec--------HHHhcCccccccHHHHHHHHhC
Confidence            44444442   367  7999999999999999999999999        7777665555444444444333

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.22  E-value=1.4e-10  Score=124.00  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=131.8

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-------cHHHHHHHHHcCCeEE-eecC
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-------TFEMAKHLAKHGLFTT-IHKY   88 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-------~~~lA~Ala~~gglgv-Ih~n   88 (671)
                      ....||++.|+|+.++..+.+++||+++|     .+.+++.||+.++|++++       +..+|.+..+.| +++ +..+
T Consensus        21 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i-----~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G-~~~~~~~~   94 (349)
T 1p0k_A           21 RETGLDDITFVHVSLPDLALEQVDISTKI-----GELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG-IPLAVGSQ   94 (349)
T ss_dssp             CCCSGGGEEECCCSCCCCCGGGCBCCEEE-----TTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHT-CCEECCCC
T ss_pred             ccCccceEEEEccccCCCCcccCCceeEE-----CCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcC-CcEEeccc
Confidence            35789999999999986666899999999     478899999999998877       557888766655 443 4433


Q ss_pred             CC-HHH-----HHHhhhc-CcccccceEEec--CCChhhHHHHHHHHHhCCCceEEEeeccC--------CCC--hHHHH
Q psy3862          89 YT-LEE-----WKAFAVQ-NPDVIKHVAVSS--GISAKDLAGLKEILAALPEIEYICLDVAN--------GYT--QTFVD  149 (671)
Q Consensus        89 ~~-~Ee-----q~~~i~~-~p~~~~~~~v~~--G~~~~d~~rl~~l~~a~~~~d~Ivld~a~--------G~~--~~~~~  149 (671)
                      .+ +|+     +.+.++. .+  ..|+..+.  +.++.+..+   .++. .+.+++.++...        +..  ..+.+
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~--~~pv~~~i~~~~~~~~~~~---~~~~-~gad~i~i~~~~~~~~~~~~~~~~~~~~~~  168 (349)
T 1p0k_A           95 MSALKDPSERLSYEIVRKENP--NGLIFANLGSEATAAQAKE---AVEM-IGANALQIHLNVIQEIVMPEGDRSFSGALK  168 (349)
T ss_dssp             TTTTTCHHHHHHHHHHHHHCS--SSCEEEEEETTCCHHHHHH---HHHH-TTCSEEEEEECTTTTC--------CTTHHH
T ss_pred             hhcccCcccccceehhhhhCC--CceeEEeecCCCCHHHHHH---HHHh-cCCCeEEecccchhhhcCCCCCcchHHHHH
Confidence            11 211     2222221 12  22443332  344443333   3322 146776555432        111  23678


Q ss_pred             HHHHHHHhC--CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEE-----EEe------ccc-CCcchhhhhc---
Q psy3862         150 FVRRIREMY--PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT-----TRL------KNK-TSDFFLIQFY---  212 (671)
Q Consensus       150 ~ik~lr~~~--P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~-----t~v------~~~-~~~~~~i~~i---  212 (671)
                      .++++++..  |...++++...+.+.++.+.++|||.|++.+.+|+...     +..      ... .++...+..+   
T Consensus       169 ~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~  248 (349)
T 1p0k_A          169 RIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSE  248 (349)
T ss_dssp             HHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHh
Confidence            888887653  65555556667899999999999999999876554311     111      000 1222222222   


Q ss_pred             -cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         213 -SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       213 -~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       ..+|  +.|||.|++.+..++++|||+|.||
T Consensus       249 ~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG  280 (349)
T 1p0k_A          249 FPASTMIASGGLQDALDVAKAIALGASCTGMA  280 (349)
T ss_dssp             CTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence             1355  6999999999999999999999998

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.20  E-value=1.9e-10  Score=140.21  Aligned_cols=177  Identities=11%  Similarity=0.196  Sum_probs=106.9

Q ss_pred             hHHhhhhhccccccccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-c----HHHHHHH
Q psy3862           2 FQKFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-T----FEMAKHL   76 (671)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~----~~lA~Al   76 (671)
                      |++|.+.+-+    ....+|+|+++.+..++..|.++||+.+.|          ..||++++|+++. +    ..||.|+
T Consensus       810 ~~~~~~~~~~----~~~~~~~dl~~~~~~l~~i~~~ev~~~~~I----------~~Pf~isaMS~GalS~ea~~aLA~Aa  875 (1479)
T 1ea0_A          810 FKKYSEQVNK----RPPMQLRDLLELRSTKAPVPVDEVESITAI----------RKRFITPGMSMGALSPEAHGTLNVAM  875 (1479)
T ss_dssp             HHHHHHHHHT----SCCCSGGGGEEECCSSCCCCGGGSCCHHHH----------HTTEEEEECCBTTBCHHHHHHHHHHH
T ss_pred             HHHHHhhhcc----CCCCchhhhhhccCCCCCCCcccccccccc----------cCCeEecCccccccCHHHHHHHHHHH
Confidence            4555544422    346789999999988887777888876644          6799999999753 2    4799999


Q ss_pred             HHcCCeEEeecC-CCHHHHHH---------hhhc-Cc-------cccc---ceEEe--cCCC--------hhhH-HHHHH
Q psy3862          77 AKHGLFTTIHKY-YTLEEWKA---------FAVQ-NP-------DVIK---HVAVS--SGIS--------AKDL-AGLKE  124 (671)
Q Consensus        77 a~~gglgvIh~n-~~~Eeq~~---------~i~~-~p-------~~~~---~~~v~--~G~~--------~~d~-~rl~~  124 (671)
                      ++.|+++.+..+ +++|+...         .+++ .+       ....   .+.+-  -|..        ...+ +.+.+
T Consensus       876 ~~aGg~~~tGeGg~~pe~~~~~~~g~~~~~~IrQ~asg~FGVn~~~l~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~  955 (1479)
T 1ea0_A          876 NRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIAR  955 (1479)
T ss_dssp             HHTTCEEECCTTCCCGGGSSBCTTSCBCCCSEEEECSSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHH
T ss_pred             HHcCCeeEcCCCccCHHHhhhccccchhhhhhhhhcCCCCCcChHHccccchHHHHHhccCCCCcCCCCCHHHHHHHHHH
Confidence            999999888765 45543210         1111 01       0000   01111  1111        1111 23333


Q ss_pred             HHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhCCC---ceEEEEEeccHHHHHHHHHCCCcEEEECcCCC
Q psy3862         125 ILAALPEIEYICLDVANGY--TQTFVDFVRRIREMYPK---HVIIAGNVVTGEMVEELILSGADVIKVGIGPG  192 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~P~---~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G  192 (671)
                      +....++.+.+.....+..  .+.+.+.++++|+..|.   ..+++++....+.|+.+.++|||+|+++|..|
T Consensus       956 ~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eG 1028 (1479)
T 1ea0_A          956 LRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG 1028 (1479)
T ss_dssp             HHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTC
T ss_pred             HcCCCCCCCccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCC
Confidence            3333456665543222221  25577888888877644   44555554456788889999999999988543

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=99.16  E-value=6.1e-10  Score=120.07  Aligned_cols=186  Identities=18%  Similarity=0.208  Sum_probs=116.3

Q ss_pred             eeeeeecccCCCcccCceEEecCCCc-cccHHHHHHHHHcCCeEEeecC-CCHHHHHHhhhcCcc-cccceEEecCC-C-
Q psy3862          41 ITRTFTFRNSGKTYQGVPIIAANMDT-VGTFEMAKHLAKHGLFTTIHKY-YTLEEWKAFAVQNPD-VIKHVAVSSGI-S-  115 (671)
Q Consensus        41 lst~lt~r~~~~~~l~~Piv~a~M~~-vt~~~lA~Ala~~gglgvIh~n-~~~Eeq~~~i~~~p~-~~~~~~v~~G~-~-  115 (671)
                      |+|+++    +.+  ++||+.++|.+ +++.+||.+++++||+|+++.+ +++|+..+.+++.+. +.+|++++.=. . 
T Consensus         1 ~~t~~~----~~~--~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~   74 (369)
T 3bw2_A            1 MSSALT----DLF--PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLTGRPFGVNVFMPQP   74 (369)
T ss_dssp             --CTTT----TSS--SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHCCSCEEEEEECCCC
T ss_pred             CCchhh----hhC--cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            356665    444  89999999995 8999999999999999999865 688776655543221 22455442111 0 


Q ss_pred             ----hh-----------------------------hH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCc
Q psy3862         116 ----AK-----------------------------DL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKH  161 (671)
Q Consensus       116 ----~~-----------------------------d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~  161 (671)
                          ..                             .+ +.++.+.+.  +++++.+.  .+.+  ..+.++.+++.   .
T Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~V~~~--~g~~--~~~~i~~~~~~---g  145 (369)
T 3bw2_A           75 ELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDD--PVPVVSFH--FGVP--DREVIARLRRA---G  145 (369)
T ss_dssp             CC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHS--CCSEEEEE--SSCC--CHHHHHHHHHT---T
T ss_pred             CcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhc--CCCEEEEe--CCCC--cHHHHHHHHHC---C
Confidence                00                             01 223334444  55666553  2232  12344444432   2


Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEECc--CCCceEEE--Eecc-c--CCcchhhhhcc---ccC--CccccccHHHHHH
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVGI--GPGSVCTT--RLKN-K--TSDFFLIQFYS---CIP--QAGNVVTGEMVEE  229 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t--~v~~-~--~~~~~~i~~i~---~~p--~aGnV~t~~~a~~  229 (671)
                      .++...+.+.+.++.+.++|+|+|++++  ++||.-..  .... .  .+.+.+++.+.   .+|  ++|||.|++.+.+
T Consensus       146 ~~v~~~v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~  225 (369)
T 3bw2_A          146 TLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAA  225 (369)
T ss_dssp             CEEEEEESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHH
Confidence            3445567888999999999999999976  35552110  0000 0  11234444442   367  7999999999999


Q ss_pred             HHHcCCCEEEEc
Q psy3862         230 LILSGADVIKVG  241 (671)
Q Consensus       230 li~aGAdgvkVG  241 (671)
                      ++++|||+|.||
T Consensus       226 ~l~~GAd~V~vG  237 (369)
T 3bw2_A          226 VLAAGADAAQLG  237 (369)
T ss_dssp             HHHTTCSEEEES
T ss_pred             HHHcCCCEEEEC
Confidence            999999999999

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.12  E-value=7.8e-11  Score=127.00  Aligned_cols=267  Identities=13%  Similarity=0.095  Sum_probs=151.7

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCH------HHHHHHHHcCCeEEEc--cC-
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTF------EMAKHLAKHGLFTTIH--KY-  364 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~------~mA~~la~~Gglgvih--r~-  364 (671)
                      .-+||||.|+|..-...+.++|||+++|-     ...+..||+-|||...+..      .+|++-+++|-..++=  +. 
T Consensus        53 ~~~fd~i~l~~~~lP~~~~~~vd~st~i~-----g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~  127 (365)
T 3sr7_A           53 YNSFDDIELIHHSLPDYDLAEIDLSTHFA-----GQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA  127 (365)
T ss_dssp             CCGGGGEEECCCSSCCSCGGGCCCCEEET-----TEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------
T ss_pred             CCCcceEEEECCCCCcCCcccccceEEEC-----CEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc
Confidence            35799999999998888889999999985     5789999999999776653      3888888888877762  22 


Q ss_pred             -CCHHHHHHH-H-hcCcccccceeeecc-cChhhHHHHH-HcCCcEEEEccccc--------ccccc--ccccccccccc
Q psy3862         365 -YTLEEWKAF-A-VQNPDVIKHVADGGC-TSPGDVAKAM-GAGADFVMLGGMFA--------GHDQS--GGELTNIEYMF  429 (671)
Q Consensus       365 -~~~e~~~~~-v-~~~~~~~~~v~~~~~-~~~~~~~~l~-~aG~d~i~id~~a~--------gh~~~--~~~~~~~~~~~  429 (671)
                       .+++. ..| + +..|+.+ .++..+. ...++..+++ .+|+|.|.|. ...        ||...  .++        
T Consensus       128 le~~~~-~~~~v~r~~P~~~-~ianig~~~~~e~~~~~ve~~~adal~ih-ln~~qe~~~p~Gd~~~~~~~~--------  196 (365)
T 3sr7_A          128 LKNPDD-TSYQVKKSRPHLL-LATNIGLDKPYQAGLQAVRDLQPLFLQVH-INLMQELLMPEGEREFRSWKK--------  196 (365)
T ss_dssp             ------------------CC-EEEEEETTSCHHHHHHHHHHHCCSCEEEE-ECHHHHHTSSSSCCCCHHHHH--------
T ss_pred             ccCccc-cceEehhhCCCCc-EEEEeCCCCCHHHHHHHHHhcCCCEEEEe-ccccccccCCCCCCcHHHHHH--------
Confidence             12222 222 2 2234421 1222222 2346677776 5799999987 331        22211  112        


Q ss_pred             cccccccccccC-ceeecccc---CchhHHH-HHHcCCcEEEECccccCCcc---CCCcEEEeCCeEEEEeeCcccHHHH
Q psy3862         430 FPLVGDMNSYLG-GVVDGGCT---SPGDVAK-AMGAGADFVMLGGMFAGHDQ---SGGELIEKDGKKVKLFYGMSSTTAM  501 (671)
Q Consensus       430 ~~~~~~~~~~~~-~~i~gG~v---~t~~~a~-~l~aGAd~V~vG~~g~G~s~---ctt~~v~~~g~~~k~g~G~~q~tAi  501 (671)
                        .+.++++.++ .+++-+ +   .+.+.++ +.++|||+|.|+. .+|++.   ++.|....   .....+|.|+..++
T Consensus       197 --~I~~l~~~~~~PVivK~-vg~g~s~e~A~~l~~aGad~I~V~g-~GGt~~a~ie~~r~~~~---~~~~~~g~pt~~~L  269 (365)
T 3sr7_A          197 --HLSDYAKKLQLPFILKE-VGFGMDVKTIQTAIDLGVKTVDISG-RGGTSFAYIENRRGGNR---SYLNQWGQTTAQVL  269 (365)
T ss_dssp             --HHHHHHHHCCSCEEEEE-CSSCCCHHHHHHHHHHTCCEEECCC-BC--------------C---GGGTTCSCBHHHHH
T ss_pred             --HHHHHHHhhCCCEEEEE-CCCCCCHHHHHHHHHcCCCEEEEeC-CCCcccchhhccccccc---cccccccccHHHHH
Confidence              2334444443 244544 3   5667777 6799999999985 444221   12221000   00014688888888


Q ss_pred             Hhhcccccc-ccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccc
Q psy3862         502 DKHAGGVAE-YRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGL  580 (671)
Q Consensus       502 ~~~a~~~~~-y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~  580 (671)
                      .++.....+ -...+|+   |+++.|++|||+-       |++               .|.++..          ++   
T Consensus       270 ~~v~~~~~~ipvia~GG---I~~g~Dv~KaLal-------GAd---------------aV~ig~~----------~l---  311 (365)
T 3sr7_A          270 LNAQPLMDKVEILASGG---IRHPLDIIKALVL-------GAK---------------AVGLSRT----------ML---  311 (365)
T ss_dssp             HHHGGGTTTSEEEECSS---CCSHHHHHHHHHH-------TCS---------------EEEESHH----------HH---
T ss_pred             HHHHHhcCCCeEEEeCC---CCCHHHHHHHHHc-------CCC---------------EEEECHH----------HH---
Confidence            876433211 1234553   7899999999983       332               1111000          00   


Q ss_pred             cccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccccccc
Q psy3862         581 RSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA  656 (671)
Q Consensus       581 ~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a  656 (671)
                            +..                      ...|       ...+.+++..+...|+..|.++|.++++||++..
T Consensus       312 ------~a~----------------------~~~G-------~~~v~~~l~~l~~eL~~~m~~~G~~si~eL~~~~  352 (365)
T 3sr7_A          312 ------ELV----------------------EQHS-------VHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVD  352 (365)
T ss_dssp             ------HHH----------------------HHSC-------HHHHHHHHHHHHHHHHHHHHHTTCSSTGGGGGCC
T ss_pred             ------HHH----------------------HhcC-------hHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccCC
Confidence                  000                      0011       1246788899999999999999999999998653

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.11  E-value=2.7e-10  Score=121.15  Aligned_cols=217  Identities=20%  Similarity=0.202  Sum_probs=127.6

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcccc------HHHHHHHHHcCCeEEeecCC
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHGLFTTIHKYY   89 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~------~~lA~Ala~~gglgvIh~n~   89 (671)
                      .....||++.|+|+.++..+.+++||+++|.     +.+++.|++.+||++++.      ..+|.+.++.|..-.+..+.
T Consensus        23 ~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~-----g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~   97 (332)
T 1vcf_A           23 KTTTGLEGFRLRYQALAGLALSEVDLTTPFL-----GKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGR   97 (332)
T ss_dssp             CCCCSGGGEEECCCTTCCCCGGGCCCCEEET-----TEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECH
T ss_pred             cchhhhhhcEEehhhCCCCCCCCCCcceEEC-----CcccCCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCch
Confidence            3456899999999999866668999999994     788999999999998653      36788777776433343331


Q ss_pred             C-HHH---HHHhhhcCcccccceEEec------CCChhhHHHHHHHHHhCCCceEEEeecc-------CCCC--hHHHHH
Q psy3862          90 T-LEE---WKAFAVQNPDVIKHVAVSS------GISAKDLAGLKEILAALPEIEYICLDVA-------NGYT--QTFVDF  150 (671)
Q Consensus        90 ~-~Ee---q~~~i~~~p~~~~~~~v~~------G~~~~d~~rl~~l~~a~~~~d~Ivld~a-------~G~~--~~~~~~  150 (671)
                      + +|+   ...+..+......|+..+.      +..++...++.+..+    .+.+.++..       .++.  ..+.+.
T Consensus        98 ~~le~~~~~~~~ql~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~----~~a~~i~~n~~~~~~~~~~~~~~~~~~~  173 (332)
T 1vcf_A           98 ILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLE----ADALAFHVNPLQEAVQRGDTDFRGLVER  173 (332)
T ss_dssp             HHHHCTTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHT----CSEEEEECCHHHHHHTTSCCCCTTHHHH
T ss_pred             hcccCCCccceEEeeccCCCceeecccChhhhhccChHHHHHHHhhcC----CCceeeccchHHHHhcCCCccHHHHHHH
Confidence            1 232   1111111111112332211      223333333333332    344333321       1221  235677


Q ss_pred             HHHHHH-hCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--E---EE---------ecccCCcchhhhhcc--
Q psy3862         151 VRRIRE-MYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--T---TR---------LKNKTSDFFLIQFYS--  213 (671)
Q Consensus       151 ik~lr~-~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--~---t~---------v~~~~~~~~~i~~i~--  213 (671)
                      ++++++ ..|...+..+...+.+.++.|.++|||+|++.+.+|+.-  +   +.         .....+++..+..+.  
T Consensus       174 i~~vr~~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~  253 (332)
T 1vcf_A          174 LAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREV  253 (332)
T ss_dssp             HHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHH
T ss_pred             HHHHHcCCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHh
Confidence            777766 124333322222688999999999999999988776420  0   00         001113333333331  


Q ss_pred             --ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 --CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 --~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                        .+|  +.|||.|++.+..++++|||+|.+|
T Consensus       254 ~~~ipvia~GGI~~~~d~~kal~~GAd~V~ig  285 (332)
T 1vcf_A          254 LPHLPLVASGGVYTGTDGAKALALGADLLAVA  285 (332)
T ss_dssp             CSSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHhCCChHhhh
Confidence              356  6999999999999999999999988

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.10  E-value=3e-09  Score=114.89  Aligned_cols=207  Identities=18%  Similarity=0.158  Sum_probs=124.3

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCC--ccc----cHHHHHHHHHcCCeEEeecC--C
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD--TVG----TFEMAKHLAKHGLFTTIHKY--Y   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~--~vt----~~~lA~Ala~~gglgvIh~n--~   89 (671)
                      ...||++.|+|+.++.  .+++||+|+|     .+.+++.||+.+||.  +.+    +..+|.+.++.|...++..+  .
T Consensus        49 ~~~f~~i~l~pr~L~~--~~~~d~st~i-----~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~  121 (368)
T 2nli_A           49 DRAWKHKLLYPRLAQD--VEAPDTSTEI-----LGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGA  121 (368)
T ss_dssp             HHGGGGEEECCCCCCC--CSCCCCCEEE-----TTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSS
T ss_pred             HHHHhheeeeccccCC--CccCCcceEE-----CCEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhH
Confidence            3579999999999984  5799999999     488999999999998  443    46788877777766556544  4


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhH-HHHHHHHHhCCCceE--EEeeccC-------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL-AGLKEILAALPEIEY--ICLDVAN-------------------------  141 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~-~rl~~l~~a~~~~d~--Ivld~a~-------------------------  141 (671)
                      ++|+........|.   -+++-..-..+.. +.++..-.+  +.++  +.+|..-                         
T Consensus       122 ~le~v~~~~~~~~~---~~QLy~~~d~~~~~~~~~ra~~a--G~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~  196 (368)
T 2nli_A          122 TFEEISEGLNGGPR---WFQIYMAKDDQQNRDILDEAKSD--GATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYL  196 (368)
T ss_dssp             CHHHHHHHHTTCCE---EEEECCBSSHHHHHHHHHHHHHT--TCSCEEEESBCC---CBC--------CCSCCHHHHHHH
T ss_pred             HHHHHHHhCCCCCE---EEEEeccCCHHHHHHHHHHHHHC--CCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhccc
Confidence            57764332101110   0111100011101 112222122  2222  2222100                         


Q ss_pred             ---------------CCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc
Q psy3862         142 ---------------GYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF  206 (671)
Q Consensus       142 ---------------G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~  206 (671)
                                     ..+....+.++++++..+ ..+++..+.+.+.++.+.++|||+|++.+.+|+..    ....+++
T Consensus       197 ~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~-~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~----~~g~~~~  271 (368)
T 2nli_A          197 RGTAEGMSLNNIYGASKQKISPRDIEEIAGHSG-LPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQL----YEAPGSF  271 (368)
T ss_dssp             TTSGGGC-----CTTBCSBCCHHHHHHHHHHSS-SCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSC----SSCCCHH
T ss_pred             ccCCCCchHHhhhhccCchhhHHHHHHHHHHcC-CCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCC----CCCCChH
Confidence                           011112344777776543 23444345789999999999999999976555320    0011233


Q ss_pred             hhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         207 FLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       207 ~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+..+.     .+|  +.|||-+++.+..++++|||+|.||
T Consensus       272 ~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG  313 (368)
T 2nli_A          272 DTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG  313 (368)
T ss_dssp             HHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            3333332     356  7999999999999999999999888

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.03  E-value=7.3e-09  Score=112.32  Aligned_cols=206  Identities=16%  Similarity=0.205  Sum_probs=125.8

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCc--c----ccHHHHHHHHHcCCeEEeecC--
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT--V----GTFEMAKHLAKHGLFTTIHKY--   88 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~--v----t~~~lA~Ala~~gglgvIh~n--   88 (671)
                      ....||++.|+|+.++.  .+++||+|+|     .+.+++.||+.+||.+  .    ++..+|.+.++.|...++...  
T Consensus        40 n~~~f~~i~l~pr~L~~--~~~~d~st~i-----~G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss~s~  112 (380)
T 1p4c_A           40 NRDVFQQWRFKPKRLVD--VSRRSLQAEV-----LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASN  112 (380)
T ss_dssp             HHHGGGGEEECCCCSCC--CSSCBCCEEE-----TTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCS
T ss_pred             HHHHHhheeeeccccCC--CccCcceeEE-----CCeecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCcccc
Confidence            34679999999999984  5799999999     4899999999999966  3    567788888888755556643  


Q ss_pred             CCHHHHHHhhhcCcccccceEEecCCChh-hHHHHHHHHHhCCCceE--EEeecc-------------------------
Q psy3862          89 YTLEEWKAFAVQNPDVIKHVAVSSGISAK-DLAGLKEILAALPEIEY--ICLDVA-------------------------  140 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~-d~~rl~~l~~a~~~~d~--Ivld~a-------------------------  140 (671)
                      +++|+..... ..|.   -+++... ... ..+.++...++  +..+  +++|..                         
T Consensus       113 ~~le~i~~~~-~~~~---~fQly~~-~~~~~~~~i~~a~~a--G~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~  185 (380)
T 1p4c_A          113 MSIEDLARQC-DGDL---WFQLYVI-HREIAQGMVLKALHT--GYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE  185 (380)
T ss_dssp             SCHHHHHHHC-CSCE---EEEECCS-SHHHHHHHHHHHHHT--TCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGT
T ss_pred             CCHHHHHhcc-CCCe---EEEEEec-hHHHHHHHHHHHHHc--CCCEEEEeecCccccchhHHHhcCCCCccccCHHHhh
Confidence            5677644320 1110   0111100 000 01112222222  1111  111110                         


Q ss_pred             ---------CC------------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         141 ---------NG------------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       141 ---------~G------------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                               .+            .+....+.++++++..+ ..+++..+.+.+.++.++++|||.|++.+.+|..    .
T Consensus       186 ~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~-~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~----~  260 (380)
T 1p4c_A          186 GIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWP-HKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQ----L  260 (380)
T ss_dssp             TCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCC-SEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTS----C
T ss_pred             hhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcC-CCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCc----C
Confidence                     00            11112356777777653 3445445789999999999999999996544421    0


Q ss_pred             cccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         200 KNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       200 ~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      -...+++..+..+.   ..|  +.|||.+++.+..++++|||+|-+|
T Consensus       261 d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iG  307 (380)
T 1p4c_A          261 DCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG  307 (380)
T ss_dssp             TTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEES
T ss_pred             CCCcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhheh
Confidence            00113333333332   235  6999999999999999999999888

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.01  E-value=3.9e-09  Score=114.06  Aligned_cols=206  Identities=18%  Similarity=0.190  Sum_probs=123.0

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEeec--CC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHK--YY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~--n~   89 (671)
                      ...||++.|+|+.++.  .+++||+++|.     +.+++.||+.+||+...      +..+|.+.++.|...++..  ..
T Consensus        40 ~~~f~~i~l~pr~l~~--~~~~d~~t~i~-----G~~~~~Pi~iAPmg~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~  112 (370)
T 1gox_A           40 RNAFSRILFRPRILID--VTNIDMTTTIL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATS  112 (370)
T ss_dssp             HHGGGGEEECCCCSCC--CSCCBCCEEET-----TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSS
T ss_pred             HHHHhhheeeccccCC--CCCCCCceEEC-----CcccCCceeEcccchhhhccchHHHHHHHHHHHcCCCeeccCCCCC
Confidence            3579999999999984  47999999994     78899999999995321      2358887777776666653  45


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhH-HHHHHHHHhCCCceEE--EeeccC-------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL-AGLKEILAALPEIEYI--CLDVAN-------------------------  141 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~-~rl~~l~~a~~~~d~I--vld~a~-------------------------  141 (671)
                      ++|+....   .| ...-+++..+-.++.. +.++.....  +.+++  .+|...                         
T Consensus       113 ~ieev~~~---~~-~~~~~QLy~~~d~~~~~~~~~~a~~~--G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~  186 (370)
T 1gox_A          113 SVEEVAST---GP-GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEG  186 (370)
T ss_dssp             CHHHHHTT---CC-CCEEEEECCBSSHHHHHHHHHHHHHT--TCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSS
T ss_pred             CHHHHHhh---cC-CCceEEEecCCCchHHHHHHHHHHHC--CCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhh
Confidence            66664322   12 1111222111111111 222222222  33332  222100                         


Q ss_pred             ----------C-----------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEec
Q psy3862         142 ----------G-----------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  200 (671)
Q Consensus       142 ----------G-----------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~  200 (671)
                                +           .+....+.++++++..+ ..+++..+.+.+.++.+.++|+|+|++.+.+|..    +.
T Consensus       187 ~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~-~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~----~~  261 (370)
T 1gox_A          187 IDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITS-LPILVKGVITAEDARLAVQHGAAGIIVSNHGARQ----LD  261 (370)
T ss_dssp             SCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCC-SCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTS----ST
T ss_pred             hhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEECCCCCcc----CC
Confidence                      0           01111244666666552 3455555678999999999999999995533321    00


Q ss_pred             ccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         201 NKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       201 ~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+++..+..+.     .+|  ..|||-+++.+..++++|||+|.||
T Consensus       262 ~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iG  309 (370)
T 1gox_A          262 YVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG  309 (370)
T ss_dssp             TCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             CcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeec
Confidence            0012222222221     355  6999999999999999999999988

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=98.98  E-value=1.7e-08  Score=113.44  Aligned_cols=211  Identities=15%  Similarity=0.133  Sum_probs=123.4

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCc---c----ccHHHHHHHHH--cCCeEEeecC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT---V----GTFEMAKHLAK--HGLFTTIHKY   88 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~---v----t~~~lA~Ala~--~gglgvIh~n   88 (671)
                      ...||++.|+|+.+.  +.+++||+++|     .+.+++.||+.+||++   +    ++..+|.+.++  .|..-++..+
T Consensus       158 ~~af~~i~l~pr~L~--dv~~~d~st~i-----~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~  230 (511)
T 1kbi_A          158 HNAYHRIFFKPKILV--DVRKVDISTDM-----LGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTL  230 (511)
T ss_dssp             HHGGGGCEECCCCSC--CCSSCBCCEEE-----TTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTT
T ss_pred             HHHhhhhcccccccc--CcccccCcccc-----CCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCc
Confidence            357999999999994  35799999999     4789999999999997   3    24567775555  4433345433


Q ss_pred             --CCHHHHHHhhhcCcccccceEEecCCChhhHHHHHH-HHHhCCCceEEEeeccC-CC---------------------
Q psy3862          89 --YTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKE-ILAALPEIEYICLDVAN-GY---------------------  143 (671)
Q Consensus        89 --~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~-l~~a~~~~d~Ivld~a~-G~---------------------  143 (671)
                        .++|+..+.. ..+....-+++..+-.....+.+.+ .-.+....-.+.+|... |.                     
T Consensus       231 a~~s~e~v~~~~-~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g  309 (511)
T 1kbi_A          231 ASCSPEEIIEAA-PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKK  309 (511)
T ss_dssp             CSSCHHHHHHTC-CCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------C
T ss_pred             ccCCHHHHHhhc-CCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCccccccccc
Confidence              5677643321 0111111122221211121222222 22231122234444322 10                     


Q ss_pred             ------------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCc
Q psy3862         144 ------------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSD  205 (671)
Q Consensus       144 ------------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~  205 (671)
                                        +....+.++++++..+ ..+++-.+.+.+.|+.+.++|||+|++.+.+|+.    +-...++
T Consensus       310 ~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~-~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~----~d~~~~~  384 (511)
T 1kbi_A          310 TNVEESQGASRALSKFIDPSLTWKDIEELKKKTK-LPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQ----LDFSRAP  384 (511)
T ss_dssp             CCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCS-SCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTS----STTCCCH
T ss_pred             ccccccccHHHHHhhccChHhHHHHHHHHHHHhC-CcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCcc----CCCCCch
Confidence                              0011345777776542 2344445567899999999999999997755531    1000122


Q ss_pred             chhhhhc----------cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         206 FFLIQFY----------SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       206 ~~~i~~i----------~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +..+..+          ..+|  +.|||-+++.+..+|++|||+|.||
T Consensus       385 ~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG  432 (511)
T 1kbi_A          385 IEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG  432 (511)
T ss_dssp             HHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            2222222          1345  6999999999999999999999888

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=98.98  E-value=6.2e-09  Score=113.30  Aligned_cols=207  Identities=14%  Similarity=0.150  Sum_probs=121.0

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEeecC--C
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKY--Y   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n--~   89 (671)
                      ...||++.|+|+.++.  .+++||+|+|     .+.+++.||+.+||....      +..+|.+.++.|...++...  +
T Consensus        63 ~~~f~~i~l~pr~L~~--~~~~d~st~i-----~G~~l~~Pi~iAPmg~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~  135 (392)
T 2nzl_A           63 IAAFSRWKLYPRMLRN--VAETDLSTSV-----LGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATS  135 (392)
T ss_dssp             HHHHHHSCBCCCCSSC--CTTCBCCEEE-----TTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSS
T ss_pred             HHhhheEEeehhhccC--CcCCCcceEE-----CCEecCCceEeccccccccccchHHHHHHHHHHHcCCCeeccchHHH
Confidence            3569999999999984  4799999999     488999999999994321      24588877777766666543  5


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhH-HHHHHHHHhCCCceEEEe--eccC-------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDL-AGLKEILAALPEIEYICL--DVAN-------------------------  141 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~-~rl~~l~~a~~~~d~Ivl--d~a~-------------------------  141 (671)
                      ++|+.....   |+...-+++-..-..+.. +.++..-.+  +.+++.+  |...                         
T Consensus       136 ~le~v~~~~---~~~~~~~QLy~~~d~~~~~~~~~ra~~~--G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~  210 (392)
T 2nzl_A          136 SIEEVAEAG---PEALRWLQLYIYKDREVTKKLVRQAEKM--GYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFET  210 (392)
T ss_dssp             CHHHHHHHC---TTSEEEEEECCBSSHHHHHHHHHHHHHT--TCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC--
T ss_pred             HHHHHHHhc---CCCcEEEEEEecCCHHHHHHHHHHHHHC--CCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhh
Confidence            687754321   111001111100011111 112222122  2222221  1110                         


Q ss_pred             -------------C-----------CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEE
Q psy3862         142 -------------G-----------YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT  197 (671)
Q Consensus       142 -------------G-----------~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t  197 (671)
                                   +           .+....+.++++++..+ ..+++..+.+.+.++.++++|||+|++.+.+|..   
T Consensus       211 ~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~---  286 (392)
T 2nzl_A          211 STLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTS-LPIVAKGILRGDDAREAVKHGLNGILVSNHGARQ---  286 (392)
T ss_dssp             ---------------CHHHHHHHHBCTTCCHHHHHHHC--CC-SCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTS---
T ss_pred             hhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhC-CCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCc---
Confidence                         0           11112233566555432 2344444578999999999999999997655521   


Q ss_pred             EecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 RLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       .-...+++..+..+.     .+|  +.|||-+++.+..++++|||+|.||
T Consensus       287 -~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iG  336 (392)
T 2nzl_A          287 -LDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG  336 (392)
T ss_dssp             -STTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             -CCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEEC
Confidence             000012333333331     255  6999999999999999999999888

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=98.96  E-value=9.7e-10  Score=119.21  Aligned_cols=274  Identities=15%  Similarity=0.186  Sum_probs=161.0

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC--C----CCHHHHHHHHHcCCeEEEccC--C
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT--V----GTFEMAKHLAKHGLFTTIHKY--Y  365 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt--V----~~~~mA~~la~~Gglgvihr~--~  365 (671)
                      ...||++.|+|..-.  ..+++||+++|-     ...+..||+-|||-.  +    ++..+|++..++|...++.-.  +
T Consensus        41 ~~~f~~i~l~pr~L~--~~~~~d~st~i~-----G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss~s~~  113 (380)
T 1p4c_A           41 RDVFQQWRFKPKRLV--DVSRRSLQAEVL-----GKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNM  113 (380)
T ss_dssp             HHGGGGEEECCCCSC--CCSSCBCCEEET-----TEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSS
T ss_pred             HHHHhheeeeccccC--CCccCcceeEEC-----CeecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCccccC
Confidence            456999999999754  558999999985     578899999999944  5    788899999999988888853  4


Q ss_pred             CHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEE--cc---------cccccccc-ccccccc-------c
Q psy3862         366 TLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVML--GG---------MFAGHDQS-GGELTNI-------E  426 (671)
Q Consensus       366 ~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~i--d~---------~a~gh~~~-~~~~~~~-------~  426 (671)
                      ++|+..+. .+.+...+.....-...++-++++.++|++.++|  |-         ..+|++.. .+.+...       +
T Consensus       114 ~le~i~~~-~~~~~~fQly~~~~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l  192 (380)
T 1p4c_A          114 SIEDLARQ-CDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKM  192 (380)
T ss_dssp             CHHHHHHH-CCSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCC
T ss_pred             CHHHHHhc-cCCCeEEEEEechHHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhcc
Confidence            68886553 1112111110000011223445557789988887  41         11344211 1111100       0


Q ss_pred             ------------c-ccccc-----ccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCC
Q psy3862         427 ------------Y-MFFPL-----VGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDG  486 (671)
Q Consensus       427 ------------~-~~~~~-----~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g  486 (671)
                                  . ..-|.     +.++++.++ .+++.| +.+.+.++ ++++|||+|.|+. .+| .    .      
T Consensus       193 ~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkg-v~t~e~a~~a~~aGad~I~vs~-~gg-~----~------  259 (380)
T 1p4c_A          193 DKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKG-LLSAEDADRCIAEGADGVILSN-HGG-R----Q------  259 (380)
T ss_dssp             SSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEE-ECCHHHHHHHHHTTCSEEEECC-GGG-T----S------
T ss_pred             CcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHHHcCCCEEEEcC-CCC-C----c------
Confidence                        0 00122     223444433 255666 46777777 6799999999985 333 1    1      


Q ss_pred             eEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccc
Q psy3862         487 KKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQL  566 (671)
Q Consensus       487 ~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~  566 (671)
                          ...|.+...++.++......-...+|+   |++..|+.|+++-       |++               .|.+    
T Consensus       260 ----~d~~~~~~~~l~~v~~~~~~pVia~GG---I~~~~dv~kal~~-------GAd---------------aV~i----  306 (380)
T 1p4c_A          260 ----LDCAISPMEVLAQSVAKTGKPVLIDSG---FRRGSDIVKALAL-------GAE---------------AVLL----  306 (380)
T ss_dssp             ----CTTCCCGGGTHHHHHHHHCSCEEECSS---CCSHHHHHHHHHT-------TCS---------------CEEE----
T ss_pred             ----CCCCcCHHHHHHHHHHHcCCeEEEECC---CCCHHHHHHHHHh-------CCc---------------Hhhe----
Confidence                123556666666554333222245553   6777799998872       232               1111    


Q ss_pred             cccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCc
Q psy3862         567 NNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGA  646 (671)
Q Consensus       567 ~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga  646 (671)
                                  | +.  .++|...                      .|.       -.+++.+..+...|+..|.++|.
T Consensus       307 ------------G-r~--~l~~~~~----------------------~g~-------~~v~~~~~~l~~el~~~m~~~G~  342 (380)
T 1p4c_A          307 ------------G-RA--TLYGLAA----------------------RGE-------TGVDEVLTLLKADIDRTLAQIGC  342 (380)
T ss_dssp             ------------S-HH--HHHHHHH----------------------HHH-------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------h-HH--HHHHHHh----------------------cCH-------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                        1 00  1111100                      010       13788899999999999999999


Q ss_pred             ccccccccccEEEEecccccc
Q psy3862         647 SKLKELPRRATFIRCTAQLNN  667 (671)
Q Consensus       647 ~~l~el~~~a~Fvrvt~q~n~  667 (671)
                      ++++||++.  +++++.++|.
T Consensus       343 ~~i~el~~~--~l~~~g~~~~  361 (380)
T 1p4c_A          343 PDITSLSPD--YLQNEGVTNT  361 (380)
T ss_dssp             CBGGGCCGG--GEEEC-----
T ss_pred             CCHHHhccC--eEEecccccc
Confidence            999999885  5777777764

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=98.93  E-value=1.2e-09  Score=138.30  Aligned_cols=214  Identities=9%  Similarity=0.085  Sum_probs=138.4

Q ss_pred             cceeeeeeecccCCCcccCceEEecCCCc-cccHHHHHHHHHcCCeEEeec--CCCHHHHHHhhhcCcc-c--ccceEEe
Q psy3862          38 EVDITRTFTFRNSGKTYQGVPIIAANMDT-VGTFEMAKHLAKHGLFTTIHK--YYTLEEWKAFAVQNPD-V--IKHVAVS  111 (671)
Q Consensus        38 ~Vdlst~lt~r~~~~~~l~~Piv~a~M~~-vt~~~lA~Ala~~gglgvIh~--n~~~Eeq~~~i~~~p~-~--~~~~~v~  111 (671)
                      .+-+.|+||    +-+. ..||+.++|++ ++..+|+.|++++||+|+|..  .+++|+..+.+++... +  .++++++
T Consensus       576 ~~~~~t~~t----~llg-~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN  650 (2051)
T 2uv8_G          576 KIFVETKFS----KLIG-RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGIN  650 (2051)
T ss_dssp             CEEEECHHH----HHHS-SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEE
T ss_pred             chhHHHHHH----HhhC-ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEE
Confidence            344566666    3344 48999999995 458999999999999999943  3778887777764432 2  2577776


Q ss_pred             cCC-Chh----hHHHHHHHHHhCCCceE--EEeeccCCCC--hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCC
Q psy3862         112 SGI-SAK----DLAGLKEILAALPEIEY--ICLDVANGYT--QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGA  182 (671)
Q Consensus       112 ~G~-~~~----d~~rl~~l~~a~~~~d~--Ivld~a~G~~--~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGa  182 (671)
                      .-+ .+.    +.+.++.+++.  ++.+  +++  ..|++  +...+.++++  ..+......+.+.....+....++|+
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~--gv~i~~v~~--~ag~p~~~~~~~~i~~l--G~~vi~~~~~~~~a~~~~~~~~~~g~  724 (2051)
T 2uv8_G          651 LIYVNPFMLQWGIPLIKELRSK--GYPIQFLTI--GAGVPSLEVASEYIETL--GLKYLGLKPGSIDAISQVINIAKAHP  724 (2051)
T ss_dssp             EETTCTTHHHHHHHHHHHHHHT--TCSEEEEEE--ESSCCCHHHHHHHHHHS--CCSCEEECCCSHHHHHHHHHHHHHST
T ss_pred             EeecChhhhhhhHHHHHHHHHc--CCCcceEEe--cCCCCchhhHHHHHHHc--CCEEEEecCchHHHHHHHHHHHHhCC
Confidence            433 222    23455666777  5555  544  34554  3344555543  11222222222334466677888899


Q ss_pred             cE---EEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHH-----------HcCCCEEEEc
Q psy3862         183 DV---IKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELI-----------LSGADVIKVG  241 (671)
Q Consensus       183 D~---IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li-----------~aGAdgvkVG  241 (671)
                      |+   ++++|  ++||.-...+.  .+.+.+++.+.   .+|  +||||+|++++.++|           .+|||||.||
T Consensus       725 d~~ii~~~~G~eaGGH~g~~d~~--~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~G  802 (2051)
T 2uv8_G          725 NFPIALQWTGGRGGGHHSFEDAH--TPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFG  802 (2051)
T ss_dssp             TSCEEEEECCSSCSEECCSCCSS--HHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECS
T ss_pred             CceeEEEEEccCcCCCCCccccc--ccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeec
Confidence            99   47777  77874110000  01222344442   366  799999999999999           8999999999


Q ss_pred             ccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862         242 IGPGSVCTTRLKTGVGYPQFSAVLECADAAH  272 (671)
Q Consensus       242 ~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~  272 (671)
                              ||.++.--.|--.++-+..-.|.
T Consensus       803 --------Trf~~t~Ea~~~~~~K~~iv~a~  825 (2051)
T 2uv8_G          803 --------SRVMIAKEVKTSPDAKKCIAACT  825 (2051)
T ss_dssp             --------GGGTTSTTSCCCHHHHHHHHTCC
T ss_pred             --------hHHHhCcccccCHHHHHHHHhCC
Confidence                    99999999887777777654444

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=98.92  E-value=2.9e-09  Score=115.04  Aligned_cols=268  Identities=18%  Similarity=0.184  Sum_probs=158.7

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHH------HHHHHHHcCCeEEEccC----
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE------MAKHLAKHGLFTTIHKY----  364 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~------mA~~la~~Gglgvihr~----  364 (671)
                      =+||||.|+|......++++|||+++|-     .+.+..|++.+||-..+...      +|..-.++|...++=-+    
T Consensus        27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~-----g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l  101 (368)
T 3vkj_A           27 TFLNDVILVHQGFPGISFSEINTKTKFF-----RKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAI  101 (368)
T ss_dssp             CSGGGEEECCCSSCBSBGGGCBCCEEET-----TEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHH
T ss_pred             CCcceEEEEcCCCCccCcccccceeEEC-----CEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhcc
Confidence            3699999999998888999999999985     67899999999998877654      57777777765553322    


Q ss_pred             CCHHHHHHH--Hhc-Ccccccceeeecc------cChhhHHHHHH-cCCcEEEEcc-cc------cccccc---cccccc
Q psy3862         365 YTLEEWKAF--AVQ-NPDVIKHVADGGC------TSPGDVAKAMG-AGADFVMLGG-MF------AGHDQS---GGELTN  424 (671)
Q Consensus       365 ~~~e~~~~~--v~~-~~~~~~~v~~~~~------~~~~~~~~l~~-aG~d~i~id~-~a------~gh~~~---~~~~~~  424 (671)
                      .+++.+..+  +++ .|+. ..++..+.      ...+...++++ +++|.+.|+= ..      .||...   .++.  
T Consensus       102 ~~~~~~~s~~~vr~~ap~~-~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~--  178 (368)
T 3vkj_A          102 EKAEARESFAIVRKVAPTI-PIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEK--  178 (368)
T ss_dssp             HCGGGSHHHHHHHHHCSSS-CEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHH--
T ss_pred             CCHHHHhhHHHHHHhCcCc-ceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHH--
Confidence            134443443  443 4542 22222222      23455555543 4777777761 11      244322   2222  


Q ss_pred             ccccccccccccccccC-ceeec--cccCchhHHH-HHHcCCcEEEECccccCCccCCC-----cEEEeCC-----eEEE
Q psy3862         425 IEYMFFPLVGDMNSYLG-GVVDG--GCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG-----ELIEKDG-----KKVK  490 (671)
Q Consensus       425 ~~~~~~~~~~~~~~~~~-~~i~g--G~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt-----~~v~~~g-----~~~k  490 (671)
                              +.++++.++ ++++-  |+..+.+.++ +.++|||+|.|+. .+| . |..     |....+-     ....
T Consensus       179 --------i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g-~GG-t-~~~~iE~~R~~~~~~~~~~~~~~~  247 (368)
T 3vkj_A          179 --------LRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSG-QGG-T-NWIAIEMIRDIRRGNWKAESAKNF  247 (368)
T ss_dssp             --------HHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCC-BTS-B-CHHHHHHHHHHHTTCTHHHHHHHT
T ss_pred             --------HHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeC-CCC-C-cccchhhhhcccccccchhhcccc
Confidence                    233333333 24442  2235777777 6799999999984 333 1 221     2100000     0001


Q ss_pred             EeeCcccHHHHHhhccccccc-cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEeccccccc
Q psy3862         491 LFYGMSSTTAMDKHAGGVAEY-RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNV  569 (671)
Q Consensus       491 ~g~G~~q~tAi~~~a~~~~~y-~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~  569 (671)
                      .++|.|++.++.++.....+. ..++|+   |+++.|+.||++-       |++               .|.++..    
T Consensus       248 ~~~g~pt~~~l~~v~~~~~~ipvia~GG---I~~~~d~~kal~l-------GA~---------------~v~ig~~----  298 (368)
T 3vkj_A          248 LDWGVPTAASIMEVRYSVPDSFLVGSGG---IRSGLDAAKAIAL-------GAD---------------IAGMALP----  298 (368)
T ss_dssp             TTCSCBHHHHHHHHHHHSTTCEEEEESS---CCSHHHHHHHHHH-------TCS---------------EEEECHH----
T ss_pred             ccccccHHHHHHHHHHHcCCCcEEEECC---CCCHHHHHHHHHc-------CCC---------------EEEEcHH----
Confidence            246889998888765544321 234443   7889999999983       332               2211000    


Q ss_pred             ccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccc
Q psy3862         570 NDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKL  649 (671)
Q Consensus       570 ~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l  649 (671)
                            ++.+                                +-+|       ...+.+++..+...||..|.++|++++
T Consensus       299 ------~l~~--------------------------------~~~G-------~~~v~~~l~~l~~eL~~~m~~~G~~~i  333 (368)
T 3vkj_A          299 ------VLKS--------------------------------AIEG-------KESLEQFFRKIIFELKAAMMLTGSKDV  333 (368)
T ss_dssp             ------HHHH--------------------------------HHHC-------HHHHHHHHHHHHHHHHHHHHHTTCCBH
T ss_pred             ------HHHH--------------------------------HhcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence                  0000                                0011       124678889999999999999999999


Q ss_pred             cccccc
Q psy3862         650 KELPRR  655 (671)
Q Consensus       650 ~el~~~  655 (671)
                      +||++.
T Consensus       334 ~el~~~  339 (368)
T 3vkj_A          334 DALKKT  339 (368)
T ss_dssp             HHHHTC
T ss_pred             HHhccC
Confidence            999853

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=98.85  E-value=8e-09  Score=126.42  Aligned_cols=214  Identities=14%  Similarity=0.163  Sum_probs=132.5

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-c----HHHHHHHHHcCCeEEeecC-C
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-T----FEMAKHLAKHGLFTTIHKY-Y   89 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~----~~lA~Ala~~gglgvIh~n-~   89 (671)
                      ....+|+|+++.+..++.+|.++||+.+.          +..||++++|+++. .    ..||.|+++.|+++.+..+ +
T Consensus       837 ~~~~~~r~l~~~~~~~~~i~~~ev~~~~~----------I~~Pfii~aMS~GslS~ea~~aLA~Aas~aGg~~~tGeGg~  906 (1520)
T 1ofd_A          837 RPVTALRDLLDFNADQPAISLEEVESVES----------IVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGE  906 (1520)
T ss_dssp             CCSCSGGGGEEECCSSCCCCGGGSCCHHH----------HHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEECTTCC
T ss_pred             CCCcchhhhccccCCCCCCCchhhccccc----------ccCceEecCcCcccccHHHHHHHHHHHHHcCCceEeCCCCC
Confidence            45679999999998877777788886554          46799999999763 2    4799999999999988765 4


Q ss_pred             CHHHHHHhhh--------cCcc------------cccceEEec---CCChhh---------------------------H
Q psy3862          90 TLEEWKAFAV--------QNPD------------VIKHVAVSS---GISAKD---------------------------L  119 (671)
Q Consensus        90 ~~Eeq~~~i~--------~~p~------------~~~~~~v~~---G~~~~d---------------------------~  119 (671)
                      ++|+...+++        ..|.            .+++  ++.   |++...                           +
T Consensus       907 ~pe~~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Q--l~sg~FGVn~~~l~~ad~IeIKi~QGAKpG~GG~Lp~~kV  984 (1520)
T 1ofd_A          907 DVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQ--IASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKV  984 (1520)
T ss_dssp             CGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEE--ECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGC
T ss_pred             CHHHHHhhhccccccccccccccccccCcchHHHHHHH--hcCCCCccChhhccchHHHHHHHhccCCCCCCCCCCHHHH
Confidence            4544210010        0010            0111  111   122111                           0


Q ss_pred             -HHHHHHHHhCCCceEEEeeccCC--CChHHHHHHHHHHHhCCC---ceEEEEEeccHHHHHHHHHCCCcEEEECcC-CC
Q psy3862         120 -AGLKEILAALPEIEYICLDVANG--YTQTFVDFVRRIREMYPK---HVIIAGNVVTGEMVEELILSGADVIKVGIG-PG  192 (671)
Q Consensus       120 -~rl~~l~~a~~~~d~Ivld~a~G--~~~~~~~~ik~lr~~~P~---~~li~g~v~t~e~a~~Li~AGaD~IvVdga-~G  192 (671)
                       +....+....|+.+.+.....+.  .++.+.+.++++|+..|.   ..+++++....+.|+.+.++|||+|++++. +|
T Consensus       985 ~~~iA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGG 1064 (1520)
T 1ofd_A          985 SEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGG 1064 (1520)
T ss_dssp             CHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCC
T ss_pred             HHHHHHHcCCCCCCCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCc
Confidence             11122222334555443321111  125567888888887644   445555544567888999999999999996 45


Q ss_pred             ceEEEE--ecc-cCCcchhhhhcc----------ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         193 SVCTTR--LKN-KTSDFFLIQFYS----------CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       193 ~~~~t~--v~~-~~~~~~~i~~i~----------~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |.....  +.. -.|....+..+.          .+|  ++|||.|++.+..++.+|||+|.+|
T Consensus      1065 Tgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iG 1128 (1520)
T 1ofd_A         1065 TGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFG 1128 (1520)
T ss_dssp             CSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECS
T ss_pred             cCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEc
Confidence            532221  110 123333333331          255  7999999999999999999999999

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=98.81  E-value=1.2e-07  Score=101.72  Aligned_cols=206  Identities=20%  Similarity=0.157  Sum_probs=128.0

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEeec--CC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHK--YY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~--n~   89 (671)
                      .-.|+++.|.|..+...  +++||+|+|     -+.++..||+.+|+....      +..+|.+.++.|-.-++-.  ++
T Consensus        38 ~~af~~~~l~prvl~dv--~~~d~~t~l-----lG~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss~  110 (352)
T 3sgz_A           38 IAAFKRIRLRPRYLRDM--SKVDTRTTI-----QGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY  110 (352)
T ss_dssp             HHHHHTCCBCCCCSSCC--SSCBCCEEE-----TTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCSS
T ss_pred             HHHHHhceeeccccCCC--CCCCCceEE-----CCcccCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCCC
Confidence            45789999999998764  689999999     489999999999988632      4568888888877666653  48


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhHHHH----HHHHHhCCCceEEEeeccC-CC---------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGL----KEILAALPEIEYICLDVAN-GY---------------------  143 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl----~~l~~a~~~~d~Ivld~a~-G~---------------------  143 (671)
                      ++||..+..   |+...-+++-  .. .|.+..    +..-.+.-..-++++|... |.                     
T Consensus       111 s~e~v~~~~---~~~~~wfQlY--~~-~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~  184 (352)
T 3sgz_A          111 SLEDIVAAA---PEGFRWFQLY--MK-SDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALR  184 (352)
T ss_dssp             CHHHHHHHS---TTCEEEEECC--CC-SCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC-
T ss_pred             CHHHHHHhc---cCccceeccc--cC-CCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhc
Confidence            888865432   2111111111  00 122111    1111221122233444321 11                     


Q ss_pred             -----------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc
Q psy3862         144 -----------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF  206 (671)
Q Consensus       144 -----------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~  206 (671)
                                       +...-+.++++++..+ .++++..+.+.+.++.++++|||.|++.+.+|+...    ...+++
T Consensus       185 ~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~-~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~~d----~~~~~~  259 (352)
T 3sgz_A          185 ALKEEKPTQSVPVLFPKASFCWNDLSLLQSITR-LPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLD----EVSASI  259 (352)
T ss_dssp             --------------CCCTTCCHHHHHHHHHHCC-SCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSC----SSCCHH
T ss_pred             ccccccccchhhhhccCCCCCHHHHHHHHHhcC-CCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCccC----CCccHH
Confidence                             1111234666666542 234444457899999999999999999886664210    011233


Q ss_pred             hhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         207 FLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       207 ~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+..+.     .+|  +.|||-+++.+..++++|||+|.||
T Consensus       260 ~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iG  301 (352)
T 3sgz_A          260 DALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG  301 (352)
T ss_dssp             HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            3333331     355  7999999999999999999999998

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=98.70  E-value=1.2e-08  Score=133.54  Aligned_cols=212  Identities=17%  Similarity=0.134  Sum_probs=134.3

Q ss_pred             CcceeeeeeecccCCCcccCceEEecCCCccc-cHHHHHHHHHcCCeEEee-cCC-CHHHHHHhhhcCcc-c--ccceEE
Q psy3862          37 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-TFEMAKHLAKHGLFTTIH-KYY-TLEEWKAFAVQNPD-V--IKHVAV  110 (671)
Q Consensus        37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~~~lA~Ala~~gglgvIh-~n~-~~Eeq~~~i~~~p~-~--~~~~~v  110 (671)
                      ..+-+.+.|+    +-+. +.|||.++|.+++ ..+||.|++++||+|+|. .++ ++|...+.+.+... +  ..++.+
T Consensus       413 g~~~~~t~~~----~~lg-~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~~~~~~~p~~v  487 (3089)
T 3zen_D          413 GSVKLETKFT----RLTG-RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELETLLEPGRAIQF  487 (3089)
T ss_dssp             CCEEEECHHH----HHHS-SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHHHSCTTCCCEE
T ss_pred             Ccccccchhh----hhcC-CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHHhcCCCCceee
Confidence            4455677776    3444 8899999999765 899999999999999994 455 78766555543211 1  235666


Q ss_pred             ecCC-Chhh----H---HHHHHHHHhCCCceEEEeeccCCCC--hHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHH
Q psy3862         111 SSGI-SAKD----L---AGLKEILAALPEIEYICLDVANGYT--QTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELIL  179 (671)
Q Consensus       111 ~~G~-~~~d----~---~rl~~l~~a~~~~d~Ivld~a~G~~--~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~  179 (671)
                      +... .+..    +   +.++.++++.+-++.+++-  .|.+  +...+.++.+++.   +..+.. .+.+.+.++++.+
T Consensus       488 Nl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~--aG~P~~ee~~~~i~~l~~~---Gi~~i~~~~~t~~~a~~~~~  562 (3089)
T 3zen_D          488 NTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVS--AGIPDLEEAVDIIDELNEV---GISHVVFKPGTVEQIRSVIR  562 (3089)
T ss_dssp             EEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEE--SSCCCHHHHHHHHTSTTHH---HHCSEEECCCSHHHHHHHHH
T ss_pred             chhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEe--CCCCchhHhHHHHHHHHHc---CCEEEEEeCCCHHHHHHHHH
Confidence            5442 3322    1   3456667774335556653  2555  2223334333322   122223 4567788888999


Q ss_pred             CCCc------EEEECc--CCCceEEEEecccCCcchhh----hhcc---ccC--CccccccHHHHHHHH-----------
Q psy3862         180 SGAD------VIKVGI--GPGSVCTTRLKNKTSDFFLI----QFYS---CIP--QAGNVVTGEMVEELI-----------  231 (671)
Q Consensus       180 AGaD------~IvVdg--a~G~~~~t~v~~~~~~~~~i----~~i~---~~p--~aGnV~t~~~a~~li-----------  231 (671)
                      +|+|      +|++.|  ++||.-...+      ..++    +.+.   .+|  +||||.|++++++++           
T Consensus       563 i~~d~~~~~y~vv~~G~eaGGH~g~~~~------~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p  636 (3089)
T 3zen_D          563 IAAEVPTKPVIVHIEGGRAGGHHSWEDL------DDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYP  636 (3089)
T ss_dssp             HHTTSTTSCEEEEECCSSSSEECCSCCH------HHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCC
T ss_pred             hhhhcCCCcEEEEEeCCCcCCCCCcccH------HHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCcc
Confidence            9999      899988  6777411111      1122    2222   356  799999999999999           


Q ss_pred             HcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhh
Q psy3862         232 LSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAH  272 (671)
Q Consensus       232 ~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~  272 (671)
                      .+|||||.||        ||.++..-.+.-.+.-+.--.+.
T Consensus       637 ~lGAdGV~vG--------Trfl~t~Ea~~s~~~K~~l~~a~  669 (3089)
T 3zen_D          637 LMPIDGILVG--------TAAMATLEATTSPQVKQLLVETK  669 (3089)
T ss_dssp             CCCCSEEECS--------STTTTCTTSCBCHHHHHHHHHCC
T ss_pred             CCCCCEEEec--------HHHHhCcccCCCHHHHHHHHhCC
Confidence            9999999999        99988876654334444433333

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=98.69  E-value=3.6e-08  Score=106.44  Aligned_cols=256  Identities=16%  Similarity=0.152  Sum_probs=156.6

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC--CCC----CHHHHHHHHHcCCeEEEccCC--C
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD--TVG----TFEMAKHLAKHGLFTTIHKYY--T  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD--tV~----~~~mA~~la~~Gglgvihr~~--~  366 (671)
                      -.||++.|+|..-.  ..+++||+++|-     ...+..||+-|||-  .++    +..+|++-+++|...++.-+.  +
T Consensus        50 ~~f~~i~l~pr~L~--~~~~~d~st~i~-----G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~  122 (368)
T 2nli_A           50 RAWKHKLLYPRLAQ--DVEAPDTSTEIL-----GHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGAT  122 (368)
T ss_dssp             HGGGGEEECCCCCC--CCSCCCCCEEET-----TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSC
T ss_pred             HHHhheeeeccccC--CCccCCcceEEC-----CEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhHH
Confidence            46999999999865  568999999985     57789999999998  555    468999999999999888554  6


Q ss_pred             HHHHHHHHhcCcccccceeeecccCh----hhHHHHHHcCCcEEEEccccc---cccc--------ccc---cc------
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSP----GDVAKAMGAGADFVMLGGMFA---GHDQ--------SGG---EL------  422 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~----~~~~~l~~aG~d~i~id~~a~---gh~~--------~~~---~~------  422 (671)
                      +|+..+...+.|-..+ +.  +...+    +.+.+..++|++.|+|. ..+   |.-+        .++   ++      
T Consensus       123 le~v~~~~~~~~~~~Q-Ly--~~~d~~~~~~~~~ra~~aG~~ai~it-~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~  198 (368)
T 2nli_A          123 FEEISEGLNGGPRWFQ-IY--MAKDDQQNRDILDEAKSDGATAIILT-ADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRG  198 (368)
T ss_dssp             HHHHHHHHTTCCEEEE-EC--CBSSHHHHHHHHHHHHHTTCSCEEEE-SBCC---CBC--------CCSCCHHHHHHHTT
T ss_pred             HHHHHHhCCCCCEEEE-Ee--ccCCHHHHHHHHHHHHHCCCCEEEEc-CCCCcccchhHHHhhcccCcchhhhhhccccc
Confidence            8876553322111111 10  01112    22333456899999876 322   1100        000   00      


Q ss_pred             ------cc------ccccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeE
Q psy3862         423 ------TN------IEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKK  488 (671)
Q Consensus       423 ------~~------~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~  488 (671)
                            +.      ........++++++.++ .+++-|+ .+.+.++ +.++|||+|.|..  .|.     |.       
T Consensus       199 ~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v-~~~e~a~~a~~~Gad~I~vs~--~gg-----r~-------  263 (368)
T 2nli_A          199 TAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGI-QHPEDADMAIKRGASGIWVSN--HGA-----RQ-------  263 (368)
T ss_dssp             SGGGC-----CTTBCSBCCHHHHHHHHHHSSSCEEEEEE-CSHHHHHHHHHTTCSEEEECC--GGG-----TS-------
T ss_pred             CCCCchHHhhhhccCchhhHHHHHHHHHHcCCCEEEEcC-CCHHHHHHHHHcCCCEEEEcC--CCc-----CC-------
Confidence                  00      00111112444555443 3666664 6667777 6799999999974  331     11       


Q ss_pred             EEEeeCcccHHHHHhhccccc-c-ccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEE
Q psy3862         489 VKLFYGMSSTTAMDKHAGGVA-E-YRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIR  561 (671)
Q Consensus       489 ~k~g~G~~q~tAi~~~a~~~~-~-y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~  561 (671)
                        ...|.+...++.++..+.. + -...+|+   |++..|+.|+|+     ||+|+++-                     
T Consensus       264 --~~~g~~~~~~l~~v~~~v~~~ipVia~GG---I~~g~D~~kalalGAd~V~iGr~~l---------------------  317 (368)
T 2nli_A          264 --LYEAPGSFDTLPAIAERVNKRVPIVFDSG---VRRGEHVAKALASGADVVALGRPVL---------------------  317 (368)
T ss_dssp             --CSSCCCHHHHHHHHHHHHTTSSCEEECSS---CCSHHHHHHHHHTTCSEEEECHHHH---------------------
T ss_pred             --CCCCCChHHHHHHHHHHhCCCCeEEEECC---CCCHHHHHHHHHcCCCEEEECHHHH---------------------
Confidence              2357778777776544332 1 0134443   788999999998     33333221                     


Q ss_pred             ecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhc
Q psy3862         562 CTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSAC  641 (671)
Q Consensus       562 ~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m  641 (671)
                                               |+...                      .|.       -.+++++..+...|+..|
T Consensus       318 -------------------------~~~~~----------------------~G~-------~gv~~~l~~l~~el~~~m  343 (368)
T 2nli_A          318 -------------------------FGLAL----------------------GGW-------QGAYSVLDYFQKDLTRVM  343 (368)
T ss_dssp             -------------------------HHHHH----------------------HHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHh----------------------cCh-------HHHHHHHHHHHHHHHHHH
Confidence                                     11000                      011       136788999999999999


Q ss_pred             cccCccccccccccc
Q psy3862         642 TYVGASKLKELPRRA  656 (671)
Q Consensus       642 ~y~Ga~~l~el~~~a  656 (671)
                      .++|.++++||++..
T Consensus       344 ~~~G~~~i~~l~~~~  358 (368)
T 2nli_A          344 QLTGSQNVEDLKGLD  358 (368)
T ss_dssp             HHHTCSSHHHHHTCC
T ss_pred             HHhCCcCHHHhcccc
Confidence            999999999998743

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=98.68  E-value=4.9e-08  Score=104.33  Aligned_cols=278  Identities=17%  Similarity=0.172  Sum_probs=148.4

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC-------CHHHHHHHHHcCCeEEEccC--
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-------TFEMAKHLAKHGLFTTIHKY--  364 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~-------~~~mA~~la~~Gglgvihr~--  364 (671)
                      ...|||+.|+|..-.-...+++||+++|-     ...+..|++-|||..++       +..+|.+..++|..-.+--+  
T Consensus        22 ~~~f~~~~l~p~~l~~~~~~~~d~~~~i~-----g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~   96 (349)
T 1p0k_A           22 ETGLDDITFVHVSLPDLALEQVDISTKIG-----ELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMS   96 (349)
T ss_dssp             CCSGGGEEECCCSCCCCCGGGCBCCEEET-----TEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTT
T ss_pred             cCccceEEEEccccCCCCcccCCceeEEC-----CcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchh
Confidence            56899999999974322337899999984     56789999999998888       77899998887744333332  


Q ss_pred             --CCH--HHHHHHHhc-Ccccccceeeec-ccChhhHHHHH-HcCCcEEEEcccccccc--ccccccccccccccccccc
Q psy3862         365 --YTL--EEWKAFAVQ-NPDVIKHVADGG-CTSPGDVAKAM-GAGADFVMLGGMFAGHD--QSGGELTNIEYMFFPLVGD  435 (671)
Q Consensus       365 --~~~--e~~~~~v~~-~~~~~~~v~~~~-~~~~~~~~~l~-~aG~d~i~id~~a~gh~--~~~~~~~~~~~~~~~~~~~  435 (671)
                        .++  +.|.+.+++ .++ .+.+.... +.+++++.+++ ++|+|.|.|. ..+-+.  ....+.  .....+..+.+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~-~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~-~~~~~~~~~~~~~~--~~~~~~~~i~~  172 (349)
T 1p0k_A           97 ALKDPSERLSYEIVRKENPN-GLIFANLGSEATAAQAKEAVEMIGANALQIH-LNVIQEIVMPEGDR--SFSGALKRIEQ  172 (349)
T ss_dssp             TTTCHHHHHHHHHHHHHCSS-SCEEEEEETTCCHHHHHHHHHHTTCSEEEEE-ECTTTTC----------CTTHHHHHHH
T ss_pred             cccCcccccceehhhhhCCC-ceeEEeecCCCCHHHHHHHHHhcCCCeEEec-ccchhhhcCCCCCc--chHHHHHHHHH
Confidence              122  234444443 222 12222222 34456666654 5799999887 332110  000000  00000112333


Q ss_pred             cccccC-ceee-c-cccCchhHHH-HHHcCCcEEEECccccCCccC---CCcEEEeCCeEEEEeeCcccHHHHHhhcccc
Q psy3862         436 MNSYLG-GVVD-G-GCTSPGDVAK-AMGAGADFVMLGGMFAGHDQS---GGELIEKDGKKVKLFYGMSSTTAMDKHAGGV  508 (671)
Q Consensus       436 ~~~~~~-~~i~-g-G~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~c---tt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~  508 (671)
                      +++.++ .++. + |+..+.+.++ +.++|||+|.|.. -.|+...   ..+..  .+.......|.+...++.++....
T Consensus       173 vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~-~ggt~~~~~e~~r~~--~~~~~~~~~g~~~~~~l~~v~~~~  249 (349)
T 1p0k_A          173 ICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGG-YGGTNFSKIENLRRQ--RQISFFNSWGISTAASLAEIRSEF  249 (349)
T ss_dssp             HHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC------------------CCGGGGTTCSCCHHHHHHHHHHHC
T ss_pred             HHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcC-CCCcchhhHHHhhcc--cchhhhhccCccHHHHHHHHHHhc
Confidence            343332 2222 2 3445667777 5799999999963 1221111   11110  000000245667777777654322


Q ss_pred             ccc-cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceee
Q psy3862         509 AEY-RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYV  587 (671)
Q Consensus       509 ~~y-~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~  587 (671)
                      .+. ...+|+   |.+.-|+.|+++.       |++               .|.++..          ++         +
T Consensus       250 ~~ipvia~GG---I~~~~d~~k~l~~-------GAd---------------~V~iG~~----------~l---------~  285 (349)
T 1p0k_A          250 PASTMIASGG---LQDALDVAKAIAL-------GAS---------------CTGMAGH----------FL---------K  285 (349)
T ss_dssp             TTSEEEEESS---CCSHHHHHHHHHT-------TCS---------------EEEECHH----------HH---------H
T ss_pred             CCCeEEEECC---CCCHHHHHHHHHc-------CCC---------------EEEEcHH----------HH---------H
Confidence            110 122332   6777888887762       332               2211000          00         0


Q ss_pred             ccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccccccc
Q psy3862         588 GASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA  656 (671)
Q Consensus       588 Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a  656 (671)
                      ...                      ..|       ...+.+.+..+...|+..|.+.|..+++||++..
T Consensus       286 ~~~----------------------~~g-------~~~~~~~~~~~~~~l~~~m~~~G~~~i~el~~~~  325 (349)
T 1p0k_A          286 ALT----------------------DSG-------EEGLLEEIQLILEELKLIMTVLGARTIADLQKAP  325 (349)
T ss_dssp             HHH----------------------HHH-------HHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCC
T ss_pred             HHh----------------------hcC-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhCC
Confidence            000                      001       0136788899999999999999999999998754

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=98.66  E-value=4.6e-08  Score=105.67  Aligned_cols=261  Identities=16%  Similarity=0.171  Sum_probs=152.4

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHH-------HHHHHHHcCCeEEEc--cCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE-------MAKHLAKHGLFTTIH--KYY  365 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~-------mA~~la~~Gglgvih--r~~  365 (671)
                      -.||++.|+|..-.  ..+++||+++|-     ...+..||+-||| .++..-       +|++-+++|...++.  ..+
T Consensus        41 ~~f~~i~l~pr~l~--~~~~~d~~t~i~-----G~~~~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~  112 (370)
T 1gox_A           41 NAFSRILFRPRILI--DVTNIDMTTTIL-----GFKISMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATS  112 (370)
T ss_dssp             HGGGGEEECCCCSC--CCSCCBCCEEET-----TEEESSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSS
T ss_pred             HHHhhheeeccccC--CCCCCCCceEEC-----CcccCCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCC
Confidence            46999999996543  458999999984     4678899999999 666544       999999999999997  456


Q ss_pred             CHHHHHHHHhcCcccccceeeecccChh----hHHHHHHcCCcEEEEccccc---cc---------ccc-cc---ccccc
Q psy3862         366 TLEEWKAFAVQNPDVIKHVADGGCTSPG----DVAKAMGAGADFVMLGGMFA---GH---------DQS-GG---ELTNI  425 (671)
Q Consensus       366 ~~e~~~~~v~~~~~~~~~v~~~~~~~~~----~~~~l~~aG~d~i~id~~a~---gh---------~~~-~~---~~~~~  425 (671)
                      ++|++.+... .+..++ +.  ....++    -+.++.++|++.|+|. +..   |.         ... .+   +++..
T Consensus       113 ~ieev~~~~~-~~~~~Q-Ly--~~~d~~~~~~~~~~a~~~G~~ai~it-~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~  187 (370)
T 1gox_A          113 SVEEVASTGP-GIRFFQ-LY--VYKDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRREADIKNRFVLPPFLTLKNFEGI  187 (370)
T ss_dssp             CHHHHHTTCC-CCEEEE-EC--CBSSHHHHHHHHHHHHHTTCCEEEEE-CSCSSCCCCHHHHHTTCCCCTTCCCGGGSSS
T ss_pred             CHHHHHhhcC-CCceEE-Ee--cCCCchHHHHHHHHHHHCCCCEEEEe-CCCCcccccHHHHHhccCCCcccchhhhhhh
Confidence            6777654211 111011 00  111222    2233456899999886 221   11         000 00   11100


Q ss_pred             ----------------------cccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcE
Q psy3862         426 ----------------------EYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGEL  481 (671)
Q Consensus       426 ----------------------~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~  481 (671)
                                            .......+.++++.++- ++..+. .+.+.++ ++++|||+|.|+. ..|      +.
T Consensus       188 ~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~-~~~e~a~~a~~~Gad~I~vs~-~gg------r~  259 (370)
T 1gox_A          188 DLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGV-ITAEDARLAVQHGAAGIIVSN-HGA------RQ  259 (370)
T ss_dssp             CCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECC-CSHHHHHHHHHTTCSEEEECC-GGG------TS
T ss_pred             hhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEec-CCHHHHHHHHHcCCCEEEECC-CCC------cc
Confidence                                  00011123334444432 555564 5666666 6799999999985 222      11


Q ss_pred             EEeCCeEEEEeeCcccHHHHHhhccccc-c-ccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceE
Q psy3862         482 IEKDGKKVKLFYGMSSTTAMDKHAGGVA-E-YRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATF  559 (671)
Q Consensus       482 v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~-y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~f  559 (671)
                               ...+.+...++.++..... + -...+|+   |++..|+.|+++-       |++               .
T Consensus       260 ---------~~~~~~~~~~l~~v~~~~~~~ipvia~GG---I~~~~D~~k~l~~-------GAd---------------a  305 (370)
T 1gox_A          260 ---------LDYVPATIMALEEVVKAAQGRIPVFLDGG---VRRGTDVFKALAL-------GAA---------------G  305 (370)
T ss_dssp             ---------STTCCCHHHHHHHHHHHTTTSSCEEEESS---CCSHHHHHHHHHH-------TCS---------------E
T ss_pred             ---------CCCcccHHHHHHHHHHHhCCCCEEEEECC---CCCHHHHHHHHHc-------CCC---------------E
Confidence                     1124567777776544331 1 0123332   6777799998873       332               2


Q ss_pred             EEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhh
Q psy3862         560 IRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRS  639 (671)
Q Consensus       560 v~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs  639 (671)
                      |.++.                 .  ++|++..                      .|.       -.+++++..+...|+.
T Consensus       306 V~iGr-----------------~--~l~~~~~----------------------~G~-------~gv~~~~~~l~~el~~  337 (370)
T 1gox_A          306 VFIGR-----------------P--VVFSLAA----------------------EGE-------AGVKKVLQMMRDEFEL  337 (370)
T ss_dssp             EEECH-----------------H--HHHHHHH----------------------HHH-------HHHHHHHHHHHHHHHH
T ss_pred             EeecH-----------------H--HHHHHhh----------------------ccH-------HHHHHHHHHHHHHHHH
Confidence            21100                 0  1121110                      010       1277889999999999


Q ss_pred             hccccCcccccccccccEE
Q psy3862         640 ACTYVGASKLKELPRRATF  658 (671)
Q Consensus       640 ~m~y~Ga~~l~el~~~a~F  658 (671)
                      .|.++|.++++||++..-.
T Consensus       338 ~m~~~G~~~i~el~~~~l~  356 (370)
T 1gox_A          338 TMALSGCRSLKEISRSHIA  356 (370)
T ss_dssp             HHHHHTCSBTTTCCGGGEE
T ss_pred             HHHHhCCCCHHHhhhccee
Confidence            9999999999999886543

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=98.64  E-value=1.7e-08  Score=128.40  Aligned_cols=61  Identities=11%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             CCcccceeeeeeccCCceeeCcceEecCCC-CCCCHHHHHHHHHcCCeEEE--ccCCCHHHHHHHHhcC
Q psy3862         312 RSEVDITRTFTFRNSGKTYQGVPIIAANMD-TVGTFEMAKHLAKHGLFTTI--HKYYTLEEWKAFAVQN  377 (671)
Q Consensus       312 r~eVdl~~~l~~~~s~~~~~~iPiIaa~MD-tV~~~~mA~~la~~Gglgvi--hr~~~~e~~~~~v~~~  377 (671)
                      -.+++++++|+.    .+. ..|||+++|+ ||++++||+++++.||+|+|  |.++++|++.+++++.
T Consensus       567 ~~~~~l~t~~t~----~lg-~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~v  630 (2060)
T 2uva_G          567 VGQTFVDTKMSR----LLG-VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKI  630 (2060)
T ss_dssp             TCCEEEECHHHH----HHT-SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHH
T ss_pred             CCceecchhhhh----ccc-cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHH
Confidence            367788888872    222 6999999999 99999999999999999999  9999999998888754

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=98.61  E-value=4.9e-08  Score=106.26  Aligned_cols=261  Identities=15%  Similarity=0.148  Sum_probs=153.6

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCC-------HHHHHHHHHcCCeEEEccC--C
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT-------FEMAKHLAKHGLFTTIHKY--Y  365 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~-------~~mA~~la~~Gglgvihr~--~  365 (671)
                      -.||++.|+|..-.  ..+++||+++|-     ...+..||+-||| .++.       -.+|++-+++|...++--+  +
T Consensus        64 ~~f~~i~l~pr~L~--~~~~~d~st~i~-----G~~l~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~  135 (392)
T 2nzl_A           64 AAFSRWKLYPRMLR--NVAETDLSTSVL-----GQRVSMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWATS  135 (392)
T ss_dssp             HHHHHSCBCCCCSS--CCTTCBCCEEET-----TEEESSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSS
T ss_pred             HhhheEEeehhhcc--CCcCCCcceEEC-----CEecCCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHHH
Confidence            46999999999854  458999999985     5778999999999 4444       3599999999999998855  4


Q ss_pred             CHHHHHHHHhcCcccccceeeecccCh----hhHHHHHHcCCcEEEEcc-c-ccc--------------cc--cccc-c-
Q psy3862         366 TLEEWKAFAVQNPDVIKHVADGGCTSP----GDVAKAMGAGADFVMLGG-M-FAG--------------HD--QSGG-E-  421 (671)
Q Consensus       366 ~~e~~~~~v~~~~~~~~~v~~~~~~~~----~~~~~l~~aG~d~i~id~-~-a~g--------------h~--~~~~-~-  421 (671)
                      ++|+..+...+.|-..+ +-  +...+    +.+.+..++|++.|+|.- . ..|              |.  .+.. + 
T Consensus       136 ~le~v~~~~~~~~~~~Q-Ly--~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~  212 (392)
T 2nzl_A          136 SIEEVAEAGPEALRWLQ-LY--IYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETST  212 (392)
T ss_dssp             CHHHHHHHCTTSEEEEE-EC--CBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC----
T ss_pred             HHHHHHHhcCCCcEEEE-EE--ecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhh
Confidence            68886543211111001 10  01112    223334568999988741 1 111              11  0000 0 


Q ss_pred             -----------------ccc---ccccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCC
Q psy3862         422 -----------------LTN---IEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGG  479 (671)
Q Consensus       422 -----------------~~~---~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt  479 (671)
                                       ++.   ........++++++.++ .+++.|+ .+.+.++ +.++|||+|.|+.  .|..    
T Consensus       213 ~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv-~~~e~A~~a~~aGad~I~vs~--~ggr----  285 (392)
T 2nzl_A          213 LSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI-LRGDDAREAVKHGLNGILVSN--HGAR----  285 (392)
T ss_dssp             -------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE-CCHHHHHHHHHTTCCEEEECC--GGGT----
T ss_pred             cccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEec-CCHHHHHHHHHcCCCEEEeCC--CCCC----
Confidence                             000   00111223455666554 3666664 5667777 6799999999974  3311    


Q ss_pred             cEEEeCCeEEEEeeCcccHHHHHhhccccc-cc-cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcc
Q psy3862         480 ELIEKDGKKVKLFYGMSSTTAMDKHAGGVA-EY-RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA  557 (671)
Q Consensus       480 ~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~-~y-~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a  557 (671)
                       .         ...|.+...++.++..+.. +. ...+|+   |++..|+.|||+-       |++              
T Consensus       286 -~---------~~~g~~~~~~l~~v~~av~~~ipVia~GG---I~~g~Dv~kalal-------GAd--------------  331 (392)
T 2nzl_A          286 -Q---------LDGVPATIDVLPEIVEAVEGKVEVFLDGG---VRKGTDVLKALAL-------GAK--------------  331 (392)
T ss_dssp             -S---------STTCCCHHHHHHHHHHHHTTSSEEEECSS---CCSHHHHHHHHHT-------TCS--------------
T ss_pred             -c---------CCCCcChHHHHHHHHHHcCCCCEEEEECC---CCCHHHHHHHHHh-------CCC--------------
Confidence             1         2357788888777654332 10 123443   7899999999982       222              


Q ss_pred             eEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHH
Q psy3862         558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGL  637 (671)
Q Consensus       558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGL  637 (671)
                       .|.+                | +.  +.|++..                      .|.       -.+++++..+...|
T Consensus       332 -~V~i----------------G-r~--~l~~~~~----------------------~g~-------~gv~~~l~~l~~el  362 (392)
T 2nzl_A          332 -AVFV----------------G-RP--IVWGLAF----------------------QGE-------KGVQDVLEILKEEF  362 (392)
T ss_dssp             -EEEE----------------C-HH--HHHHHHH----------------------HHH-------HHHHHHHHHHHHHH
T ss_pred             -eeEE----------------C-HH--HHHHHHh----------------------cCh-------HHHHHHHHHHHHHH
Confidence             2211                1 00  1111110                      010       13678899999999


Q ss_pred             hhhccccCccccccccccc
Q psy3862         638 RSACTYVGASKLKELPRRA  656 (671)
Q Consensus       638 rs~m~y~Ga~~l~el~~~a  656 (671)
                      +..|.++|.++++||++..
T Consensus       363 ~~~m~~~G~~~i~el~~~~  381 (392)
T 2nzl_A          363 RLAMALSGCQNVKVIDKTL  381 (392)
T ss_dssp             HHHHHHHTCSBGGGCCGGG
T ss_pred             HHHHHHhCCCcHHHHhhhh
Confidence            9999999999999998753

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=98.59  E-value=5.8e-08  Score=103.09  Aligned_cols=192  Identities=17%  Similarity=0.151  Sum_probs=117.7

Q ss_pred             ccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEE-ccCCCHHHHHHHHhcCccccc-ceeeeccc-C
Q psy3862         315 VDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTI-HKYYTLEEWKAFAVQNPDVIK-HVADGGCT-S  391 (671)
Q Consensus       315 Vdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvi-hr~~~~e~~~~~v~~~~~~~~-~v~~~~~~-~  391 (671)
                      ..+.++|+    +.+.+..|||.++|..++++++|.+.++.||+|++ .++.++++..+.+++.++... .+...... .
T Consensus        13 ~~~~t~~~----~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~   88 (326)
T 3bo9_A           13 MTVRTRVT----DLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVS   88 (326)
T ss_dssp             CCCCCHHH----HHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTS
T ss_pred             eeecchhH----HhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            34455554    34567899999999999999999999999999999 577899988877776554322 12221112 2


Q ss_pred             h---hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEE
Q psy3862         392 P---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVML  467 (671)
Q Consensus       392 ~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~v  467 (671)
                      +   +.++.++++|+|++.+.   .|...   ++          ++.++++ +-.+.. .+.+.+.++ +.++|||+|.+
T Consensus        89 ~~~~~~~~~~~~~g~d~V~l~---~g~p~---~~----------~~~l~~~-g~~v~~-~v~s~~~a~~a~~~GaD~i~v  150 (326)
T 3bo9_A           89 PWADDLVKVCIEEKVPVVTFG---AGNPT---KY----------IRELKEN-GTKVIP-VVASDSLARMVERAGADAVIA  150 (326)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEE---SSCCH---HH----------HHHHHHT-TCEEEE-EESSHHHHHHHHHTTCSCEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEEC---CCCcH---HH----------HHHHHHc-CCcEEE-EcCCHHHHHHHHHcCCCEEEE
Confidence            2   34455588999999974   23221   12          1222322 111222 245556665 67999999988


Q ss_pred             -CccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHh
Q psy3862         468 -GGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSA  541 (671)
Q Consensus       468 -G~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag  541 (671)
                       |. .+|+.               .| ..+....+.+......--....|+   |.+.-|+.++++     |++|+.+-.
T Consensus       151 ~g~-~~GG~---------------~G-~~~~~~ll~~i~~~~~iPviaaGG---I~~~~dv~~al~~GA~gV~vGs~~~~  210 (326)
T 3bo9_A          151 EGM-ESGGH---------------IG-EVTTFVLVNKVSRSVNIPVIAAGG---IADGRGMAAAFALGAEAVQMGTRFVA  210 (326)
T ss_dssp             ECT-TSSEE---------------CC-SSCHHHHHHHHHHHCSSCEEEESS---CCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred             ECC-CCCcc---------------CC-CccHHHHHHHHHHHcCCCEEEECC---CCCHHHHHHHHHhCCCEEEechHHHc
Confidence             63 33311               01 123334443322111111123332   567789999998     899999999


Q ss_pred             ccccCcc
Q psy3862         542 CTYVGAS  548 (671)
Q Consensus       542 ~~e~~g~  548 (671)
                      +.|+++.
T Consensus       211 ~~e~~~~  217 (326)
T 3bo9_A          211 SVESDVH  217 (326)
T ss_dssp             BSSCCSC
T ss_pred             Ccccccc
Confidence            9998775

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=98.43  E-value=5.4e-07  Score=101.22  Aligned_cols=261  Identities=13%  Similarity=0.105  Sum_probs=150.0

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC---C----CCHHHHHHHHH--cCCeEEEccC-
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT---V----GTFEMAKHLAK--HGLFTTIHKY-  364 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt---V----~~~~mA~~la~--~Gglgvihr~-  364 (671)
                      -.|+++.|+|..-  ...+++||+++|-     ...+..||+-|||-.   +    ++..+|++-.+  +|..-++.-. 
T Consensus       159 ~af~~i~l~pr~L--~dv~~~d~st~i~-----G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a  231 (511)
T 1kbi_A          159 NAYHRIFFKPKIL--VDVRKVDISTDML-----GSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLA  231 (511)
T ss_dssp             HGGGGCEECCCCS--CCCSSCBCCEEET-----TEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTC
T ss_pred             HHhhhhccccccc--cCcccccCccccC-----CccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcc
Confidence            3599999999985  3448999999984     567899999999985   3    45668888777  8887777654 


Q ss_pred             -CCHHHHHHHHhcCcccccceeeecccC-hhhH----HHHHHcCCcEEEEcccc---cccccc--------c----c---
Q psy3862         365 -YTLEEWKAFAVQNPDVIKHVADGGCTS-PGDV----AKAMGAGADFVMLGGMF---AGHDQS--------G----G---  420 (671)
Q Consensus       365 -~~~e~~~~~v~~~~~~~~~v~~~~~~~-~~~~----~~l~~aG~d~i~id~~a---~gh~~~--------~----~---  420 (671)
                       .++|+..+... .++. +.+.---... ++..    .+..++|+|.|+|+ ..   .|+-+.        +    .   
T Consensus       232 ~~s~e~v~~~~~-~~~~-~~~~QLy~~~d~~~~~~~~~rae~aG~~al~it-vd~p~~g~R~~~~r~g~~~p~~~~~~~~  308 (511)
T 1kbi_A          232 SCSPEEIIEAAP-SDKQ-IQWYQLYVNSDRKITDDLVKNVEKLGVKALFVT-VDAPSLGQREKDMKLKFSNTKAGPKAMK  308 (511)
T ss_dssp             SSCHHHHHHTCC-CSSC-CEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEE-CSCSSCCCCHHHHHHHHTTCC-------
T ss_pred             cCCHHHHHhhcC-CCCC-CeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe-CCCCCccccHHHHhccCCCCcccccccc
Confidence             67887755320 0110 1111111112 2222    22346899988776 32   232000        0    0   


Q ss_pred             -----------ccc---cccccccccccccccccCc-eeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEe
Q psy3862         421 -----------ELT---NIEYMFFPLVGDMNSYLGG-VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEK  484 (671)
Q Consensus       421 -----------~~~---~~~~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~  484 (671)
                                 .++   .........++++++.++- +++-|+ .+.+.++ +.++|||+|.|+. ..| .    +.   
T Consensus       309 g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv-~~~e~A~~a~~aGad~I~vs~-hgG-~----~~---  378 (511)
T 1kbi_A          309 KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGV-QRTEDVIKAAEIGVSGVVLSN-HGG-R----QL---  378 (511)
T ss_dssp             CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEE-CSHHHHHHHHHTTCSEEEECC-TTT-T----SS---
T ss_pred             cccccccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeC-CCHHHHHHHHHcCCCEEEEcC-CCC-c----cC---
Confidence                       000   0000112224455555433 555553 4566666 6799999999985 333 1    11   


Q ss_pred             CCeEEEEeeCcccHHHHHhhccccccc-------cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcc
Q psy3862         485 DGKKVKLFYGMSSTTAMDKHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA  557 (671)
Q Consensus       485 ~g~~~k~g~G~~q~tAi~~~a~~~~~y-------~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a  557 (671)
                             ..+.+...++.++..+..+.       ...+|+   |++..|+.|||+-       |++              
T Consensus       379 -------d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GG---I~~g~Dv~kaLal-------GAd--------------  427 (511)
T 1kbi_A          379 -------DFSRAPIEVLAETMPILEQRNLKDKLEVFVDGG---VRRGTDVLKALCL-------GAK--------------  427 (511)
T ss_dssp             -------TTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESS---CCSHHHHHHHHHH-------TCS--------------
T ss_pred             -------CCCCchHHHHHHHHHHHHhhccCCCcEEEEECC---CCCHHHHHHHHHc-------CCC--------------
Confidence                   23456666666554433210       122232   7889999999983       232              


Q ss_pred             eEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHH
Q psy3862         558 TFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGL  637 (671)
Q Consensus       558 ~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGL  637 (671)
                       .|.++.                 .  +.|++..                      .|.       -.+++++..+...|
T Consensus       428 -aV~iGr-----------------~--~l~~~~~----------------------~G~-------~gv~~~l~~l~~el  458 (511)
T 1kbi_A          428 -GVGLGR-----------------P--FLYANSC----------------------YGR-------NGVEKAIEILRDEI  458 (511)
T ss_dssp             -EEEECH-----------------H--HHHHHHH----------------------HHH-------HHHHHHHHHHHHHH
T ss_pred             -EEEECH-----------------H--HHHHHHh----------------------cCh-------HHHHHHHHHHHHHH
Confidence             221100                 0  0111110                      010       13678889999999


Q ss_pred             hhhccccCcccccccccc
Q psy3862         638 RSACTYVGASKLKELPRR  655 (671)
Q Consensus       638 rs~m~y~Ga~~l~el~~~  655 (671)
                      +..|.++|.++++||++.
T Consensus       459 ~~~m~~~G~~~i~el~~~  476 (511)
T 1kbi_A          459 EMSMRLLGVTSIAELKPD  476 (511)
T ss_dssp             HHHHHHHTCCBGGGCCGG
T ss_pred             HHHHHHhCCCcHHHHhHH
Confidence            999999999999999875

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=98.37  E-value=6.9e-07  Score=94.87  Aligned_cols=277  Identities=16%  Similarity=0.074  Sum_probs=148.3

Q ss_pred             ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCH------HHHHHHHHcCCeEEEccCC-
Q psy3862         293 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTF------EMAKHLAKHGLFTTIHKYY-  365 (671)
Q Consensus       293 ~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~------~mA~~la~~Gglgvihr~~-  365 (671)
                      ....||++.|+|..-.....+++||+++|-     ...+..|++-|||-..+..      .+|.+..++|...++.-.- 
T Consensus        24 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~-----g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~   98 (332)
T 1vcf_A           24 TTTGLEGFRLRYQALAGLALSEVDLTTPFL-----GKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRI   98 (332)
T ss_dssp             CCCSGGGEEECCCTTCCCCGGGCCCCEEET-----TEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred             chhhhhhcEEehhhCCCCCCCCCCcceEEC-----CcccCCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchh
Confidence            345799999999986533457899999885     5678899999999876543      7889999999766655331 


Q ss_pred             -----CHHHHHHHHhcC-cccccceeeec-----ccChhhHHHHHH-cCCcEEEEcccccccc-cccccccccccccccc
Q psy3862         366 -----TLEEWKAFAVQN-PDVIKHVADGG-----CTSPGDVAKAMG-AGADFVMLGGMFAGHD-QSGGELTNIEYMFFPL  432 (671)
Q Consensus       366 -----~~e~~~~~v~~~-~~~~~~v~~~~-----~~~~~~~~~l~~-aG~d~i~id~~a~gh~-~~~~~~~~~~~~~~~~  432 (671)
                           ..+.|.+ ++.. ++ .+.++..+     ..+++...++++ +++|.+.++ ..++.. ....+.  ..+.....
T Consensus        99 ~le~~~~~~~~q-l~~~~~d-~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~-~n~~~~~~~~~~~--~~~~~~~~  173 (332)
T 1vcf_A           99 LLERPEALRSFR-VRKVAPK-ALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFH-VNPLQEAVQRGDT--DFRGLVER  173 (332)
T ss_dssp             HHHCTTTHHHHC-CTTTCSS-SCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEE-CCHHHHHHTTSCC--CCTTHHHH
T ss_pred             cccCCCccceEE-eeccCCC-ceeecccChhhhhccChHHHHHHHhhcCCCceeec-cchHHHHhcCCCc--cHHHHHHH
Confidence                 2223433 2221 12 11111111     123455555543 588988877 321100 000000  00001123


Q ss_pred             ccccccccCc-eeecccc---CchhHHH-HHHcCCcEEEECccccCCc---cCCCcEEEeCCeEEEEeeCcccHHHHHhh
Q psy3862         433 VGDMNSYLGG-VVDGGCT---SPGDVAK-AMGAGADFVMLGGMFAGHD---QSGGELIEKDGKKVKLFYGMSSTTAMDKH  504 (671)
Q Consensus       433 ~~~~~~~~~~-~i~gG~v---~t~~~a~-~l~aGAd~V~vG~~g~G~s---~ctt~~v~~~g~~~k~g~G~~q~tAi~~~  504 (671)
                      ++++++ ++- +++-+ +   .+.+.++ +.++|||+|.|.. ..|++   +...|.....+..+....|.|...++.++
T Consensus       174 i~~vr~-~~~Pv~vK~-v~~g~~~e~a~~~~~~G~d~I~vs~-~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v  250 (332)
T 1vcf_A          174 LAELLP-LPFPVMVKE-VGHGLSREAALALRDLPLAAVDVAG-AGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEV  250 (332)
T ss_dssp             HHHHCS-CSSCEEEEC-SSSCCCHHHHHHHTTSCCSEEECCC-BTSCCHHHHHHTC--------CCTTCSCBHHHHHHHH
T ss_pred             HHHHHc-CCCCEEEEe-cCCCCCHHHHHHHHHcCCCEEEeCC-CCCCcchhHHHhhccccchhhhHhhccccHHHHHHHH
Confidence            445555 432 33222 2   4566666 4599999999974 22311   00002100000011134577777777665


Q ss_pred             ccccccc-cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhccccccc
Q psy3862         505 AGGVAEY-RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSA  583 (671)
Q Consensus       505 a~~~~~y-~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~  583 (671)
                      .....+. ...+|+   |++..|+.|+|+-       |++               +|.++.              .    
T Consensus       251 ~~~~~~ipvia~GG---I~~~~d~~kal~~-------GAd---------------~V~igr--------------~----  287 (332)
T 1vcf_A          251 REVLPHLPLVASGG---VYTGTDGAKALAL-------GAD---------------LLAVAR--------------P----  287 (332)
T ss_dssp             HHHCSSSCEEEESS---CCSHHHHHHHHHH-------TCS---------------EEEECG--------------G----
T ss_pred             HHhcCCCeEEEECC---CCCHHHHHHHHHh-------CCC---------------hHhhhH--------------H----
Confidence            4332110 123332   6888899998873       333               221100              0    


Q ss_pred             ceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccccccc
Q psy3862         584 CTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRA  656 (671)
Q Consensus       584 k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a  656 (671)
                       +.|+.                       -.|.       -.+++++..+...|+..|.++|.++++||++..
T Consensus       288 -~l~~~-----------------------~~G~-------~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~  329 (332)
T 1vcf_A          288 -LLRPA-----------------------LEGA-------ERVAAWIGDYLEELRTALFAIGARNPKEARGRV  329 (332)
T ss_dssp             -GHHHH-----------------------TTCH-------HHHHHHHHHHHHHHHHHHHHHTCSSGGGGTTCE
T ss_pred             -HHHHH-----------------------hccH-------HHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhhh
Confidence             00000                       0121       147889999999999999999999999998753

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.29  E-value=3.8e-06  Score=88.15  Aligned_cols=194  Identities=14%  Similarity=0.123  Sum_probs=112.0

Q ss_pred             ceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--------------------------eec----C
Q psy3862          39 VDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--------------------------IHK----Y   88 (671)
Q Consensus        39 Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--------------------------Ih~----n   88 (671)
                      +||++++     .+++|+-||+.+++....+.+....+++.| +|.                          +|+    |
T Consensus         2 ~dl~~~i-----~g~~l~nPi~~Aag~~~~~~~~~~~~~~~G-~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~   75 (314)
T 2e6f_A            2 MCLKLNL-----LDHVFANPFMNAAGVLCSTEEDLRCMTASS-SGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN   75 (314)
T ss_dssp             CCCCEEE-----TTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred             CCcceEE-----CCEecCCCcEECCCCCCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence            5888998     589999999999976444455556565544 432                          211    2


Q ss_pred             CCHHHHHHhhhcCcc-cccceEEecC-CChhhHHHH-HHHHHhCCCce---EEEeecc--C--------CCChHHHHHHH
Q psy3862          89 YTLEEWKAFAVQNPD-VIKHVAVSSG-ISAKDLAGL-KEILAALPEIE---YICLDVA--N--------GYTQTFVDFVR  152 (671)
Q Consensus        89 ~~~Eeq~~~i~~~p~-~~~~~~v~~G-~~~~d~~rl-~~l~~a~~~~d---~Ivld~a--~--------G~~~~~~~~ik  152 (671)
                      ...+.+.+.+++... ...|+.++++ ..++++.++ +.+.++  +.|   ++.++..  +        +.++...+.++
T Consensus        76 ~g~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~--g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~  153 (314)
T 2e6f_A           76 LGFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPV--AQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQ  153 (314)
T ss_dssp             SCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHH--HHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHh--CCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHH
Confidence            234443333432211 1245555443 455666443 334344  456   6666543  1        13455667777


Q ss_pred             HHHHh--CCCceEEEEEeccHHH----HHHHHHCC-CcEEEECcCCCce-EEE----E-----------ec-c-cCC-cc
Q psy3862         153 RIREM--YPKHVIIAGNVVTGEM----VEELILSG-ADVIKVGIGPGSV-CTT----R-----------LK-N-KTS-DF  206 (671)
Q Consensus       153 ~lr~~--~P~~~li~g~v~t~e~----a~~Li~AG-aD~IvVdga~G~~-~~t----~-----------v~-~-~~~-~~  206 (671)
                      .+++.  .|...++..+. +.+.    ++.+.++| +|+|++-...|.. .+.    .           +. . ..| .+
T Consensus       154 ~vr~~~~~Pv~vK~~~~~-~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~  232 (314)
T 2e6f_A          154 QVSLAYGLPFGVKMPPYF-DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTAL  232 (314)
T ss_dssp             HHHHHHCSCEEEEECCCC-CHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHH
T ss_pred             HHHHhcCCCEEEEECCCC-CHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHH
Confidence            77764  57666666553 3333    88889999 9999874422110 000    0           00 0 000 12


Q ss_pred             hhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         207 FLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       207 ~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+..++    .+|  ..|||-|++.+..++++|||+|.||
T Consensus       233 ~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig  273 (314)
T 2e6f_A          233 ANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVG  273 (314)
T ss_dssp             HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            2222221    345  6999999999999999999999998

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=98.28  E-value=1.3e-06  Score=92.42  Aligned_cols=183  Identities=18%  Similarity=0.076  Sum_probs=108.5

Q ss_pred             eeCcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCC-HHHHHHHHhcCccccc-ceeeecccC-----h---hhHHHH
Q psy3862         330 YQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYT-LEEWKAFAVQNPDVIK-HVADGGCTS-----P---GDVAKA  398 (671)
Q Consensus       330 ~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~-~e~~~~~v~~~~~~~~-~v~~~~~~~-----~---~~~~~l  398 (671)
                      .+..|||.++|..++++++|.+.++.||+|+++ .+++ ++++.+++++.++... .+.......     +   +.++.+
T Consensus        13 ~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~   92 (328)
T 2gjl_A           13 GVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAI   92 (328)
T ss_dssp             TCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHH
Confidence            467899999999999999999999999999997 4555 8887776665433211 111111112     2   344555


Q ss_pred             HHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEE-CccccCCcc
Q psy3862         399 MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVML-GGMFAGHDQ  476 (671)
Q Consensus       399 ~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~v-G~~g~G~s~  476 (671)
                      .++|+|++.+.   .|+.   .++          ++.++++ +-.+. ..+.+.+-++ +.+.|||+|.+ |. .+|+. 
T Consensus        93 ~~~g~d~V~~~---~g~p---~~~----------~~~l~~~-gi~vi-~~v~t~~~a~~~~~~GaD~i~v~g~-~~GG~-  152 (328)
T 2gjl_A           93 IEAGIRVVETA---GNDP---GEH----------IAEFRRH-GVKVI-HKCTAVRHALKAERLGVDAVSIDGF-ECAGH-  152 (328)
T ss_dssp             HHTTCCEEEEE---ESCC---HHH----------HHHHHHT-TCEEE-EEESSHHHHHHHHHTTCSEEEEECT-TCSBC-
T ss_pred             HhcCCCEEEEc---CCCc---HHH----------HHHHHHc-CCCEE-eeCCCHHHHHHHHHcCCCEEEEECC-CCCcC-
Confidence            88999999976   2322   112          2223332 11122 2345555555 67999999998 53 33311 


Q ss_pred             CCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         477 SGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       477 ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      +..             ...+....+.++.....--....|+   |.+.-|+.++++     +++|+.+-.+.|+++.
T Consensus       153 ~G~-------------~~~~~~~~l~~v~~~~~iPviaaGG---I~~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~  213 (328)
T 2gjl_A          153 PGE-------------DDIPGLVLLPAAANRLRVPIIASGG---FADGRGLVAALALGADAINMGTRFLATRECPIH  213 (328)
T ss_dssp             CCS-------------SCCCHHHHHHHHHTTCCSCEEEESS---CCSHHHHHHHHHHTCSEEEESHHHHTSSSSCSC
T ss_pred             CCC-------------ccccHHHHHHHHHHhcCCCEEEECC---CCCHHHHHHHHHcCCCEEEECHHHHcCcccccc
Confidence            000             0123334444432221111122232   556678889888     8899999999887665

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=98.20  E-value=3.8e-06  Score=90.42  Aligned_cols=45  Identities=20%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             CcceEecCCC-CCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhc
Q psy3862         332 GVPIIAANMD-TVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQ  376 (671)
Q Consensus       332 ~iPiIaa~MD-tV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~  376 (671)
                      ..|||.+||. .+++++||.+.++.||+|+|+ .+.++|+..+++++
T Consensus        10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~   56 (369)
T 3bw2_A           10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKR   56 (369)
T ss_dssp             SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHH
T ss_pred             cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHH
Confidence            7899999999 599999999999999999998 66798877666543

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.18  E-value=3.1e-06  Score=88.29  Aligned_cols=196  Identities=18%  Similarity=0.167  Sum_probs=113.7

Q ss_pred             CcceeeeeeecccCCCcccCceEEecC-CCccccHHHHHHHHHcCCeE--E------------------------eec--
Q psy3862          37 SEVDITRTFTFRNSGKTYQGVPIIAAN-MDTVGTFEMAKHLAKHGLFT--T------------------------IHK--   87 (671)
Q Consensus        37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~-M~~vt~~~lA~Ala~~gglg--v------------------------Ih~--   87 (671)
                      +++||++++     .+++|+-||+.++ |++.+. ++...+++ +|+|  +                        +|.  
T Consensus         3 ~~~~l~~~~-----~g~~l~npi~~aag~~~~~~-~~~~~~~~-~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g   75 (311)
T 1ep3_A            3 ENNRLSVKL-----PGLDLKNPIIPASGCFGFGE-EYAKYYDL-NKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIG   75 (311)
T ss_dssp             CCTTTCEEE-----TTEEESSSEEECTTSSTTST-TGGGTSCG-GGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCC
T ss_pred             CCCccceEE-----CCEECCCCcEECCCCCCCCH-HHHHHHHh-cCCCEEEeCeeccCccCCCCCCeEEECCcccccccC
Confidence            689999999     5899999999998 887664 23332222 2222  2                        232  


Q ss_pred             --CCCHHHHHHh----hhc-CcccccceEEecCC-ChhhHHHHHHHHHhCCCceEEEeecc-----C------CCChHHH
Q psy3862          88 --YYTLEEWKAF----AVQ-NPDVIKHVAVSSGI-SAKDLAGLKEILAALPEIEYICLDVA-----N------GYTQTFV  148 (671)
Q Consensus        88 --n~~~Eeq~~~----i~~-~p~~~~~~~v~~G~-~~~d~~rl~~l~~a~~~~d~Ivld~a-----~------G~~~~~~  148 (671)
                        +.+++++.+.    +++ .|  ..++.++.+. .++++.++.+.+....+.|.+-++..     +      +.++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~--~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~  153 (311)
T 1ep3_A           76 LQNPGLEVIMTEKLPWLNENFP--ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAA  153 (311)
T ss_dssp             CCBCCHHHHHHTHHHHHHHHCT--TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhcCC--CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHH
Confidence              2455554332    222 21  3456665543 35566665555542137787766432     1      1234456


Q ss_pred             HHHHHHHHh--CCCceEEEEEecc-HHHHHHHHHCCCcEEEECcC------CCceEE-------EEe-cccC-C-cchhh
Q psy3862         149 DFVRRIREM--YPKHVIIAGNVVT-GEMVEELILSGADVIKVGIG------PGSVCT-------TRL-KNKT-S-DFFLI  209 (671)
Q Consensus       149 ~~ik~lr~~--~P~~~li~g~v~t-~e~a~~Li~AGaD~IvVdga------~G~~~~-------t~v-~~~~-~-~~~~i  209 (671)
                      +.++.+++.  .|...++.....+ .+.++.|.++|+|+|.+.+.      |+....       ... .... + .+..+
T Consensus       154 eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i  233 (311)
T 1ep3_A          154 ALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLI  233 (311)
T ss_dssp             HHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHH
Confidence            777777765  3544444433333 56689999999999999541      110000       000 0000 0 01223


Q ss_pred             hhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         210 QFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       210 ~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+.   .+|  ++|||.|.+.+..++++|||+|.||
T Consensus       234 ~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg  270 (311)
T 1ep3_A          234 HQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG  270 (311)
T ss_dssp             HHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            2232   356  6999999999999999999999999

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=98.09  E-value=5e-06  Score=89.11  Aligned_cols=206  Identities=19%  Similarity=0.179  Sum_probs=122.7

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCC------CCHHHHHHHHHcCCeEEEcc--CCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHK--YYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV------~~~~mA~~la~~Gglgvihr--~~~  366 (671)
                      -.|+++.|+|.-  +..-+++||+++|=     ...+..||.-||+-..      +|..+|++-++.|-.-++--  .++
T Consensus        39 ~af~~~~l~prv--l~dv~~~d~~t~ll-----G~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss~s  111 (352)
T 3sgz_A           39 AAFKRIRLRPRY--LRDMSKVDTRTTIQ-----GQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYS  111 (352)
T ss_dssp             HHHHTCCBCCCC--SSCCSSCBCCEEET-----TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCSSC
T ss_pred             HHHHhceeeccc--cCCCCCCCCceEEC-----CcccCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCCCC
Confidence            458899999965  33446789999984     5678999999997544      47889999999999888874  588


Q ss_pred             HHHHHHHHhcCcccccceeeecccChhh-----HHHHHHcCCcEEEEcccc---ccccccc----------cccccc---
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSPGD-----VAKAMGAGADFVMLGGMF---AGHDQSG----------GELTNI---  425 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~~~-----~~~l~~aG~d~i~id~~a---~gh~~~~----------~~~~~~---  425 (671)
                      +||..+.....+.-.+..    ...+.+     +++..++|+..|++. +-   .|.-+.-          +.+.+.   
T Consensus       112 ~e~v~~~~~~~~~wfQlY----~~~d~~~~~~l~~ra~~aG~~alvlT-vD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~  186 (352)
T 3sgz_A          112 LEDIVAAAPEGFRWFQLY----MKSDWDFNKQMVQRAEALGFKALVIT-IDTPVLGNRRRDKRNQLNLEANILKAALRAL  186 (352)
T ss_dssp             HHHHHHHSTTCEEEEECC----CCSCHHHHHHHHHHHHHTTCCCEEEE-CSCSSCCCCHHHHHHHHHSCHHHHTTCC---
T ss_pred             HHHHHHhccCccceeccc----cCCCHHHHHHHHHHHHHcCCCEEEEE-eCCCCCCcchhhhhcCCCCCcccchhhhccc
Confidence            999887542211111100    112222     233356898877765 22   2321000          000000   


Q ss_pred             ---------------cccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeE
Q psy3862         426 ---------------EYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKK  488 (671)
Q Consensus       426 ---------------~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~  488 (671)
                                     .......++++++.++ .+++-|+ .+.+.++ +.++|||+|.|..  .|..    +.       
T Consensus       187 ~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v-~~~e~A~~a~~~GaD~I~vsn--~GG~----~~-------  252 (352)
T 3sgz_A          187 KEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGI-LTKEDAELAMKHNVQGIVVSN--HGGR----QL-------  252 (352)
T ss_dssp             ------------CCCTTCCHHHHHHHHHHCCSCEEEEEE-CSHHHHHHHHHTTCSEEEECC--GGGT----SS-------
T ss_pred             ccccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEec-CcHHHHHHHHHcCCCEEEEeC--CCCC----cc-------
Confidence                           0011123555566554 3666664 5666666 6799999999974  3411    11       


Q ss_pred             EEEeeCcccHHHHHhhccccc-c-ccccCCceEeeecCCCHHHHHH
Q psy3862         489 VKLFYGMSSTTAMDKHAGGVA-E-YRAAEGKTVQVPYRGDVNDTVQ  532 (671)
Q Consensus       489 ~k~g~G~~q~tAi~~~a~~~~-~-y~~~~G~~v~i~~~Gdi~kAia  532 (671)
                         ..+.+...++.++..... + -...+|+   |++..|+.|||+
T Consensus       253 ---d~~~~~~~~L~~i~~av~~~ipVia~GG---I~~g~Dv~kaLa  292 (352)
T 3sgz_A          253 ---DEVSASIDALREVVAAVKGKIEVYMDGG---VRTGTDVLKALA  292 (352)
T ss_dssp             ---CSSCCHHHHHHHHHHHHTTSSEEEEESS---CCSHHHHHHHHH
T ss_pred             ---CCCccHHHHHHHHHHHhCCCCeEEEECC---CCCHHHHHHHHH
Confidence               125677777776544321 1 0123332   788999999998

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=98.09  E-value=3.6e-05  Score=77.73  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=102.3

Q ss_pred             cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcccccce-EEe----cC--CC-hhhHHHHHHHHHhCCCceEEEeecc
Q psy3862          69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHV-AVS----SG--IS-AKDLAGLKEILAALPEIEYICLDVA  140 (671)
Q Consensus        69 ~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~~~~~~-~v~----~G--~~-~~d~~rl~~l~~a~~~~d~Ivld~a  140 (671)
                      ..+||.+..+.|..|+.-.  ++|+ .+.+++.  +..|+ ++.    .+  +- ....+++.+++++  ++|++.++..
T Consensus        38 ~~~~A~a~~~~Ga~~i~~~--~~~~-i~~ir~~--v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~a--Gad~I~l~~~  110 (229)
T 3q58_A           38 VAAMAQAAASAGAVAVRIE--GIEN-LRTVRPH--LSVPIIGIIKRDLTGSPVRITPYLQDVDALAQA--GADIIAFDAS  110 (229)
T ss_dssp             HHHHHHHHHHTTCSEEEEE--SHHH-HHHHGGG--CCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHH--TCSEEEEECC
T ss_pred             HHHHHHHHHHCCCcEEEEC--CHHH-HHHHHHh--cCCCEEEEEeecCCCCceEeCccHHHHHHHHHc--CCCEEEECcc
Confidence            4689999999999987432  3443 2333321  11121 110    01  10 1235667778888  8899999877


Q ss_pred             CC-CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc--ccC-
Q psy3862         141 NG-YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS--CIP-  216 (671)
Q Consensus       141 ~G-~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~--~~p-  216 (671)
                      .. .+..+.++++..++.   ...+...+.+.+.++.+.++|+|+|.+. .+|....+  +...+++.++..+.  .+| 
T Consensus       111 ~~~~p~~l~~~i~~~~~~---g~~v~~~v~t~eea~~a~~~Gad~Ig~~-~~g~t~~~--~~~~~~~~li~~l~~~~ipv  184 (229)
T 3q58_A          111 FRSRPVDIDSLLTRIRLH---GLLAMADCSTVNEGISCHQKGIEFIGTT-LSGYTGPI--TPVEPDLAMVTQLSHAGCRV  184 (229)
T ss_dssp             SSCCSSCHHHHHHHHHHT---TCEEEEECSSHHHHHHHHHTTCSEEECT-TTTSSSSC--CCSSCCHHHHHHHHTTTCCE
T ss_pred             ccCChHHHHHHHHHHHHC---CCEEEEecCCHHHHHHHHhCCCCEEEec-CccCCCCC--cCCCCCHHHHHHHHHcCCCE
Confidence            54 345566666666542   3455567889999999999999999652 22211000  11224555554442  466 


Q ss_pred             -CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 -QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 -~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       +.|||.|.+.++.++++|||||.||
T Consensus       185 IA~GGI~t~~d~~~~~~~GadgV~VG  210 (229)
T 3q58_A          185 IAEGRYNTPALAANAIEHGAWAVTVG  210 (229)
T ss_dssp             EEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEc
Confidence             7999999999999999999999999

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.04  E-value=1.7e-05  Score=96.02  Aligned_cols=196  Identities=17%  Similarity=0.178  Sum_probs=117.9

Q ss_pred             CcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee-----------cC-----------------
Q psy3862          37 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-----------KY-----------------   88 (671)
Q Consensus        37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh-----------~n-----------------   88 (671)
                      +++||++++     .+++|+.||+.++|...++.+++.+....| +|++-           .|                 
T Consensus       529 ~~v~ls~~~-----~G~~~~nPv~lAa~~~~~~~~~~~~~~~~g-~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~  602 (1025)
T 1gte_A          529 DLVDISVEM-----AGLKFINPFGLASAAPTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGP  602 (1025)
T ss_dssp             GGCCCCEEE-----TTEEESSSEEECSSGGGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSS
T ss_pred             ccccceeee-----ccccccCcccccCCCCCCCHHHHHHHHHCC-cCeEEeceecccccccCCCCccEEeccccccccCC
Confidence            689999999     589999999999999888777777655553 33221           01                 


Q ss_pred             -------------CCHHHHHHhhh---c-CcccccceEEec--CCChhhHHHHHHHHHhCCCceEEEeecc--CC-----
Q psy3862          89 -------------YTLEEWKAFAV---Q-NPDVIKHVAVSS--GISAKDLAGLKEILAALPEIEYICLDVA--NG-----  142 (671)
Q Consensus        89 -------------~~~Eeq~~~i~---~-~p~~~~~~~v~~--G~~~~d~~rl~~l~~a~~~~d~Ivld~a--~G-----  142 (671)
                                   ..++.+.+.+.   + .|+  .++.++.  |.+++++.++.+.+.. .+.|+|.++..  +.     
T Consensus       603 ~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~--~~~i~~i~~g~~~~~~~~~a~~~~~-~g~d~iein~~~P~~~~~~~  679 (1025)
T 1gte_A          603 GQSSFLNIELISEKTAAYWCQSVTELKADFPD--NIVIASIMCSYNKNDWMELSRKAEA-SGADALELNLSCPHGMGERG  679 (1025)
T ss_dssp             CCSCEEECCCSCSSCHHHHHHHHHHHHHHCTT--SEEEEEECCCSCHHHHHHHHHHHHH-TTCSEEEEECCCBCCCC---
T ss_pred             chhheeeeccccchhHHHHHHHHHHHHhcCCC--CCeEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCC
Confidence                         12333322221   1 221  3444443  4556677665555432 26788777643  11     


Q ss_pred             -------CChHHHHHHHHHHHh--CCCceEEEEEec-cHHHHHHHHHCCCcEEEEC----------cC---------CCc
Q psy3862         143 -------YTQTFVDFVRRIREM--YPKHVIIAGNVV-TGEMVEELILSGADVIKVG----------IG---------PGS  193 (671)
Q Consensus       143 -------~~~~~~~~ik~lr~~--~P~~~li~g~v~-t~e~a~~Li~AGaD~IvVd----------ga---------~G~  193 (671)
                             .+..+.+.++.+++.  .|...++..++. ..+.++.+.++|+|.|.+-          .-         ||.
T Consensus       680 ~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr  759 (1025)
T 1gte_A          680 MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKR  759 (1025)
T ss_dssp             --SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTB
T ss_pred             cccccccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEecccccccccccccccccccccccc
Confidence                   124456677777765  476666665554 3577999999999999991          10         221


Q ss_pred             eEEEEec-ccC-C-cchhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         194 VCTTRLK-NKT-S-DFFLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       194 ~~~t~v~-~~~-~-~~~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ....... ... | .+..+..+.    .+|  ..|||-|++.+..++++|||+|.||
T Consensus       760 ~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg  816 (1025)
T 1gte_A          760 TTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVC  816 (1025)
T ss_dssp             BCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             ccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEe
Confidence            1000010 000 0 012222221    356  6999999999999999999999999

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=98.03  E-value=1.4e-05  Score=84.70  Aligned_cols=179  Identities=21%  Similarity=0.163  Sum_probs=106.6

Q ss_pred             eCcceEecCCCCCCCHHHHHHHHHcCCeEEEc-cCCCHHHHHHHHhcCcccccceeeecc-c-Ch--hh-HHHHHHcCCc
Q psy3862         331 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KYYTLEEWKAFAVQNPDVIKHVADGGC-T-SP--GD-VAKAMGAGAD  404 (671)
Q Consensus       331 ~~iPiIaa~MDtV~~~~mA~~la~~Gglgvih-r~~~~e~~~~~v~~~~~~~~~v~~~~~-~-~~--~~-~~~l~~aG~d  404 (671)
                      +..|||.++|..+++.++|.++++.|++|+|. .+.++++..+.+++.++.......... . .+  ++ ++.+.++|+|
T Consensus        11 ~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d   90 (332)
T 2z6i_A           11 IDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVK   90 (332)
T ss_dssp             CSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCS
T ss_pred             CCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCC
Confidence            57899999999999999999999999999995 778998877777665433211111111 1 22  33 4455789999


Q ss_pred             EEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEE-CccccCCccCCCcEE
Q psy3862         405 FVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVML-GGMFAGHDQSGGELI  482 (671)
Q Consensus       405 ~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~v-G~~g~G~s~ctt~~v  482 (671)
                      ++.+.   .|+..   +++          +.++++ +-.+. -.+.+.+.++ +.++|+|+|.+ |. .+|     +.  
T Consensus        91 ~V~~~---~g~p~---~~i----------~~l~~~-g~~v~-~~v~~~~~a~~~~~~GaD~i~v~g~-~~G-----G~--  144 (332)
T 2z6i_A           91 VVTTG---AGNPS---KYM----------ERFHEA-GIIVI-PVVPSVALAKRMEKIGADAVIAEGM-EAG-----GH--  144 (332)
T ss_dssp             EEEEC---SSCGG---GTH----------HHHHHT-TCEEE-EEESSHHHHHHHHHTTCSCEEEECT-TSS-----EE--
T ss_pred             EEEEC---CCChH---HHH----------HHHHHc-CCeEE-EEeCCHHHHHHHHHcCCCEEEEECC-CCC-----CC--
Confidence            99975   23432   221          222222 11111 2245555565 56899999998 42 222     10  


Q ss_pred             EeCCeEEEEeeCcccHHHHHhhccccccccccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCc
Q psy3862         483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGA  547 (671)
Q Consensus       483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g  547 (671)
                              .| ..+....+.+......--....|+   |.+.-|+.++++     |++|+.+-.+.|++.
T Consensus       145 --------~g-~~~~~~ll~~i~~~~~iPViaaGG---I~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~  202 (332)
T 2z6i_A          145 --------IG-KLTTMTLVRQVATAISIPVIAAGG---IADGEGAAAGFMLGAEAVQVGTRFVVAKESNA  202 (332)
T ss_dssp             --------CC-SSCHHHHHHHHHHHCSSCEEEESS---CCSHHHHHHHHHTTCSEEEECHHHHTBTTCCS
T ss_pred             --------CC-CccHHHHHHHHHHhcCCCEEEECC---CCCHHHHHHHHHcCCCEEEecHHHhcCccccc
Confidence                    01 122333333321111100122232   566778888888     889999999988873

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.97  E-value=7.5e-05  Score=75.52  Aligned_cols=160  Identities=16%  Similarity=0.151  Sum_probs=101.4

Q ss_pred             cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcccccce-EEe----cC--C-ChhhHHHHHHHHHhCCCceEEEeecc
Q psy3862          69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHV-AVS----SG--I-SAKDLAGLKEILAALPEIEYICLDVA  140 (671)
Q Consensus        69 ~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~~~~~~-~v~----~G--~-~~~d~~rl~~l~~a~~~~d~Ivld~a  140 (671)
                      ..+||.+..+.|..++.-.  ++++ .+.+++.  +..|+ ++.    .+  + -....+.+.+++++  ++|+++++..
T Consensus        38 ~~~~A~a~~~~Ga~~i~~~--~~~~-i~~ir~~--v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~--Gad~V~l~~~  110 (232)
T 3igs_A           38 VAAMALAAEQAGAVAVRIE--GIDN-LRMTRSL--VSVPIIGIIKRDLDESPVRITPFLDDVDALAQA--GAAIIAVDGT  110 (232)
T ss_dssp             HHHHHHHHHHTTCSEEEEE--SHHH-HHHHHTT--CCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHH--TCSEEEEECC
T ss_pred             HHHHHHHHHHCCCeEEEEC--CHHH-HHHHHHh--cCCCEEEEEeecCCCcceEeCccHHHHHHHHHc--CCCEEEECcc
Confidence            3689999999998887432  3443 2333321  11221 110    01  1 01235667777888  8899999877


Q ss_pred             CC-CChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc--ccC-
Q psy3862         141 NG-YTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS--CIP-  216 (671)
Q Consensus       141 ~G-~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~--~~p-  216 (671)
                      .. .+..+.++++..++.   ...+...+.+.+.++.+.++|+|+|.+. .+|....+  +...+++.++..+.  .+| 
T Consensus       111 ~~~~p~~l~~~i~~~~~~---g~~v~~~v~t~eea~~a~~~Gad~Ig~~-~~g~t~~~--~~~~~~~~~i~~l~~~~ipv  184 (232)
T 3igs_A          111 ARQRPVAVEALLARIHHH---HLLTMADCSSVDDGLACQRLGADIIGTT-MSGYTTPD--TPEEPDLPLVKALHDAGCRV  184 (232)
T ss_dssp             SSCCSSCHHHHHHHHHHT---TCEEEEECCSHHHHHHHHHTTCSEEECT-TTTSSSSS--CCSSCCHHHHHHHHHTTCCE
T ss_pred             ccCCHHHHHHHHHHHHHC---CCEEEEeCCCHHHHHHHHhCCCCEEEEc-CccCCCCC--CCCCCCHHHHHHHHhcCCcE
Confidence            54 245556666666542   3455567889999999999999999642 12211000  11224454444442  466 


Q ss_pred             -CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 -QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 -~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       +.|||.|.+.++.++++|||||.||
T Consensus       185 IA~GGI~t~~d~~~~~~~GadgV~VG  210 (232)
T 3igs_A          185 IAEGRYNSPALAAEAIRYGAWAVTVG  210 (232)
T ss_dssp             EEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEe
Confidence             7999999999999999999999999

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=97.88  E-value=5.8e-05  Score=81.02  Aligned_cols=207  Identities=17%  Similarity=0.122  Sum_probs=116.3

Q ss_pred             ecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--e-------------------
Q psy3862          27 RPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--I-------------------   85 (671)
Q Consensus        27 vP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--I-------------------   85 (671)
                      .|++.-.  +++.||++++     .+++|+-||+.++-....+.+...++...| +|.  +                   
T Consensus        25 ~~~~~~~--~~~~~L~~~~-----~Gl~~~NPv~lAAG~~~~~~e~~~~l~~~G-~G~v~~ktvt~~pq~GNp~PR~~~~   96 (354)
T 4ef8_A           25 TGGQQMG--RGSMSLQVNL-----LNNTFANPFMNAAGVMCTTTEELVAMTESA-SGSLVSKSCTPALREGNPTPRYQAL   96 (354)
T ss_dssp             -----------CCCCCEEE-----TTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCEEEEEECSSCBCCSCSCCEEEE
T ss_pred             CchhhcC--CCCCCcceEE-----CCEECCCCCEeccCCCCCCHHHHHHHHHcC-CCeEEeCcccCcccCCCCCCcEEec
Confidence            3444433  4789999999     599999999988776666667677677664 321  1                   


Q ss_pred             -----ec----CCCHHHHHHhhhcCc-ccccceEEec-CCChhhHHHHHHHHHh--CCCceEEEeecc--C--C------
Q psy3862          86 -----HK----YYTLEEWKAFAVQNP-DVIKHVAVSS-GISAKDLAGLKEILAA--LPEIEYICLDVA--N--G------  142 (671)
Q Consensus        86 -----h~----n~~~Eeq~~~i~~~p-~~~~~~~v~~-G~~~~d~~rl~~l~~a--~~~~d~Ivld~a--~--G------  142 (671)
                           |+    |..+|.+.+.+++.. ....|+.+++ |.+++|+.+..+.++.  ..+.|++.+|..  +  |      
T Consensus        97 ~~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~  176 (354)
T 4ef8_A           97 PLGSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAY  176 (354)
T ss_dssp             TTEEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGG
T ss_pred             chhhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhcc
Confidence                 11    234555555543221 1124566654 6778887655444441  114677777754  1  1      


Q ss_pred             CChHHHHHHHHHHHh--CCCceEEEEEecc---HHHHHHHHHCC-CcEEEE----------CcCCCce------EEEEec
Q psy3862         143 YTQTFVDFVRRIREM--YPKHVIIAGNVVT---GEMVEELILSG-ADVIKV----------GIGPGSV------CTTRLK  200 (671)
Q Consensus       143 ~~~~~~~~ik~lr~~--~P~~~li~g~v~t---~e~a~~Li~AG-aD~IvV----------dga~G~~------~~t~v~  200 (671)
                      .++.+.+.++.+++.  .|...|+.-+...   .+.++.+.++| +|.|++          |.-....      ...-++
T Consensus       177 ~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlS  256 (354)
T 4ef8_A          177 DFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLG  256 (354)
T ss_dssp             SHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEE
T ss_pred             CHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCC
Confidence            234555666766664  4777777765432   23455556888 999975          2100000      000000


Q ss_pred             cc--CC-cchhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         201 NK--TS-DFFLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       201 ~~--~~-~~~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      -.  .| ++..+..+.    .+|  ..|||-|++.+..++++|||+|.||
T Consensus       257 G~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vg  306 (354)
T 4ef8_A          257 GRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG  306 (354)
T ss_dssp             GGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEEC
T ss_pred             CCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEh
Confidence            00  00 122222221    245  6999999999999999999999999

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=97.81  E-value=6.8e-05  Score=79.40  Aligned_cols=194  Identities=17%  Similarity=0.148  Sum_probs=102.8

Q ss_pred             cceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee-cC----------------------------
Q psy3862          38 EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH-KY----------------------------   88 (671)
Q Consensus        38 ~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh-~n----------------------------   88 (671)
                      .+||++++     .+++++.||+.+++ +....+++.++++.| +|++- ..                            
T Consensus        42 ~~~l~~~i-----~g~~l~npi~~aag-~~~~~~~~~~~a~~G-~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g  114 (336)
T 1f76_A           42 VPAKPVNC-----MGLTFKNPLGLAAG-LDKDGECIDALGAMG-FGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMG  114 (336)
T ss_dssp             CCCCCEEE-----TTEEESSSEEECTT-SSTTCCCHHHHHHTT-CSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCC
T ss_pred             CCCCCeEE-----CCEEcCCCcEeCcc-cCCcHHHHHHHHHcC-ccEEEeCCCCCCCCCCCCCcceeeccccceeeecCC
Confidence            48899999     58999999999975 222334666666554 54320 01                            


Q ss_pred             ---CCHHHHHHhhhcCcccccceEEecCCC--------hhhHHHHHHHHHhCCCceEEEeecc--C--C-----CChHHH
Q psy3862          89 ---YTLEEWKAFAVQNPDVIKHVAVSSGIS--------AKDLAGLKEILAALPEIEYICLDVA--N--G-----YTQTFV  148 (671)
Q Consensus        89 ---~~~Eeq~~~i~~~p~~~~~~~v~~G~~--------~~d~~rl~~l~~a~~~~d~Ivld~a--~--G-----~~~~~~  148 (671)
                         ...+...+.+++.+ ...++.++++-.        .+++.+..+.+..  +.|++.++..  +  |     ..+...
T Consensus       115 ~~~~g~~~~~~~~~~~~-~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~--g~d~iein~~sP~~~g~~~~~~~~~~~  191 (336)
T 1f76_A          115 FNNLGVDNLVENVKKAH-YDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA--YAGYIAINISSPNTPGLRTLQYGEALD  191 (336)
T ss_dssp             CCBCCHHHHHHHHHHCC-CCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG--GCSEEEEECCCSSSTTGGGGGSHHHHH
T ss_pred             CCCcCHHHHHHHHHhcc-cCCcEEEEecCCCCCcccccHHHHHHHHHHHhc--cCCEEEEEccCCCCCCcccccCHHHHH
Confidence               11233333333221 012455554321        2333333333333  5677666532  1  1     112233


Q ss_pred             HHHHHHHH-----------hCCCceEEEEEec---cHHHHHHHHHCCCcEEEECcCC-CceEEE---------Eec-c-c
Q psy3862         149 DFVRRIRE-----------MYPKHVIIAGNVV---TGEMVEELILSGADVIKVGIGP-GSVCTT---------RLK-N-K  202 (671)
Q Consensus       149 ~~ik~lr~-----------~~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~-G~~~~t---------~v~-~-~  202 (671)
                      +.++.+++           .+|...++.....   ..+.++.|.++|+|+|++.+.. +.....         -+. . .
T Consensus       192 ~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~  271 (336)
T 1f76_A          192 DLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPL  271 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGG
T ss_pred             HHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchh
Confidence            44444443           2565555543321   2455889999999999986421 100000         000 0 0


Q ss_pred             CC-cchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         203 TS-DFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       203 ~~-~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+ .+..+..++     .+|  ..|||-|++.+..++++|||+|.+|
T Consensus       272 ~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ig  318 (336)
T 1f76_A          272 QLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY  318 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEee
Confidence            00 112222221     356  6999999999999999999999998

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=97.57  E-value=0.00027  Score=73.90  Aligned_cols=193  Identities=16%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEee----------cC--------------------CC
Q psy3862          41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIH----------KY--------------------YT   90 (671)
Q Consensus        41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh----------~n--------------------~~   90 (671)
                      |++++     .+++|+-||+.++.....+.++...+++.| +|.+-          .|                    ..
T Consensus         2 l~~~i-----~g~~l~npv~~Aag~~~~~~~~~~~~~~~G-~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g   75 (311)
T 1jub_A            2 LNTTF-----ANAKFANPFMNASGVHCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG   75 (311)
T ss_dssp             CCEEE-----TTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred             CceEE-----CCEEcCCCcEECCCCCCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence            45666     488999999999754333566666665544 44321          11                    11


Q ss_pred             HHHHHHhhhcCc-cc--ccceEEec-CCChhhHHHHHH-HHHhCCCce-EEEeecc--C--------CCChHHHHHHHHH
Q psy3862          91 LEEWKAFAVQNP-DV--IKHVAVSS-GISAKDLAGLKE-ILAALPEIE-YICLDVA--N--------GYTQTFVDFVRRI  154 (671)
Q Consensus        91 ~Eeq~~~i~~~p-~~--~~~~~v~~-G~~~~d~~rl~~-l~~a~~~~d-~Ivld~a--~--------G~~~~~~~~ik~l  154 (671)
                      .+.+.+.+.+.. ..  ..|+.+++ |..++++.++.+ +.++  +.| ++.++..  +        +.++...+.++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~--g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~v  153 (311)
T 1jub_A           76 FDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQES--DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEV  153 (311)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHS--CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhc--CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHH
Confidence            343333332111 11  23555443 345566654443 4444  567 7766542  1        1345566777777


Q ss_pred             HHh--CCCceEEEEEecc---HHHHHHHHHCCCcEEEECcCCCceE-EE----E-----------eccc--CC-cchhhh
Q psy3862         155 REM--YPKHVIIAGNVVT---GEMVEELILSGADVIKVGIGPGSVC-TT----R-----------LKNK--TS-DFFLIQ  210 (671)
Q Consensus       155 r~~--~P~~~li~g~v~t---~e~a~~Li~AGaD~IvVdga~G~~~-~t----~-----------v~~~--~~-~~~~i~  210 (671)
                      ++.  .|...++..+...   .+.++.+.++|+|.|++-...+... +.    .           +...  .| .+..+.
T Consensus       154 r~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~  233 (311)
T 1jub_A          154 FTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVR  233 (311)
T ss_dssp             TTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHH
T ss_pred             HHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHH
Confidence            654  4766666655421   2337889999999998844321100 00    0           0000  00 122222


Q ss_pred             hcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         211 FYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       211 ~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.     .+|  ..|||-|++.+..++++|||+|.||
T Consensus       234 ~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg  271 (311)
T 1jub_A          234 AFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG  271 (311)
T ss_dssp             HHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            221     355  6999999999999999999999999

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=97.55  E-value=0.00053  Score=73.29  Aligned_cols=183  Identities=14%  Similarity=0.052  Sum_probs=104.4

Q ss_pred             cCceEEecCCCccccHHHHHHHHHcCCeEEeecCC-CHHHHHH----hhhcCcccccceEEec-CCChhhHHHHHHHH-H
Q psy3862          55 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYY-TLEEWKA----FAVQNPDVIKHVAVSS-GISAKDLAGLKEIL-A  127 (671)
Q Consensus        55 l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~-~~Eeq~~----~i~~~p~~~~~~~v~~-G~~~~d~~rl~~l~-~  127 (671)
                      |+-||+.+||.++|+..+.....+.||.|.+-..| +.+....    .+.+......++.+.. |-.++++.++.+++ +
T Consensus         2 l~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~a~~   81 (350)
T 3b0p_A            2 LDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKSLAEAARIGEA   81 (350)
T ss_dssp             CCCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence            46699999999999988888777888877765433 3333211    1111111234554433 44556665544443 4


Q ss_pred             hCCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEE-EEe------ccHHHHHHHHHCCCc
Q psy3862         128 ALPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIA-GNV------VTGEMVEELILSGAD  183 (671)
Q Consensus       128 a~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~-g~v------~t~e~a~~Li~AGaD  183 (671)
                      +  +.|.|-++..-          |     .++.+.+.++.+++.  .|...++- |..      .+.+.++.|.++|+|
T Consensus        82 ~--G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d  159 (350)
T 3b0p_A           82 F--GYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVK  159 (350)
T ss_dssp             T--TCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             c--CCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCC
Confidence            4  66777665321          1     123345556666654  46444432 211      124678899999999


Q ss_pred             EEEECcCC---CceEEEEeccc-CCcchhhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         184 VIKVGIGP---GSVCTTRLKNK-TSDFFLIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       184 ~IvVdga~---G~~~~t~v~~~-~~~~~~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .|.+.+..   |.+-. .-... ..+...+..++    .+|  +.|||.|.+.+..+++ |||+|.+|
T Consensus       160 ~I~V~~r~~~~g~~g~-~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG  225 (350)
T 3b0p_A          160 VFVVHARSALLALSTK-ANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG  225 (350)
T ss_dssp             EEEEECSCBC-----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred             EEEEecCchhcccCcc-cccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence            99996521   22100 00000 01223333332    345  6999999999999998 99999998

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=97.54  E-value=0.00024  Score=75.91  Aligned_cols=198  Identities=16%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             cceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--------------------------eec----
Q psy3862          38 EVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--------------------------IHK----   87 (671)
Q Consensus        38 ~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--------------------------Ih~----   87 (671)
                      -.||++++     .+++|+-||+.++-......+....+...| +|.                          ||+    
T Consensus        35 m~~L~~~~-----~Gl~~~NPv~lAaG~~~~~~e~~~~~~~~G-~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~  108 (345)
T 3oix_A           35 MVSTHTTI-----GSFDFDNCLMNAAGVYCMTREELAAIDHSE-AGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLP  108 (345)
T ss_dssp             -CCCCEEE-----TTEEESCSEEECTTSSCSSHHHHHHHHTSS-CSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCC
T ss_pred             cCCcCeEE-----CCEECCCCCEEcCCCCCCCHHHHHHHHHcC-CCeEEeeeecCCCCCCCCCCcEEecccchhccCCCC
Confidence            46899999     599999999988665555666666666654 332                          221    


Q ss_pred             CCCHHHHHHhhhcC--cccccceEEec-CCChhhHHHHHHHHHhCCCceEEEeecc--C--C------CChHHHHHHHHH
Q psy3862          88 YYTLEEWKAFAVQN--PDVIKHVAVSS-GISAKDLAGLKEILAALPEIEYICLDVA--N--G------YTQTFVDFVRRI  154 (671)
Q Consensus        88 n~~~Eeq~~~i~~~--p~~~~~~~v~~-G~~~~d~~rl~~l~~a~~~~d~Ivld~a--~--G------~~~~~~~~ik~l  154 (671)
                      |..+|.+.+.+++.  .....|+.+++ |.+++|+.+..+.++..+-.+++.++..  +  |      .++.+.+.++.+
T Consensus       109 n~G~~~~~~~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av  188 (345)
T 3oix_A          109 NLGINYYLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEV  188 (345)
T ss_dssp             BSCHHHHHHHHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHH
Confidence            23455554444321  01123555554 4677777666666653322347777654  1  1      124455566666


Q ss_pred             HHh--CCCceEEEEEeccHHHHHHHHHCCCcEEEE---CcCCCce-EE----EEe--ccc---C--Cc-----chhhhhc
Q psy3862         155 REM--YPKHVIIAGNVVTGEMVEELILSGADVIKV---GIGPGSV-CT----TRL--KNK---T--SD-----FFLIQFY  212 (671)
Q Consensus       155 r~~--~P~~~li~g~v~t~e~a~~Li~AGaD~IvV---dga~G~~-~~----t~v--~~~---~--~~-----~~~i~~i  212 (671)
                      ++.  .|...|+..+....+-++.+.++|+|.|..   --.-|.. .+    ..+  +..   +  +.     +..+..+
T Consensus       189 ~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i  268 (345)
T 3oix_A          189 FTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAF  268 (345)
T ss_dssp             TTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHH
T ss_pred             HHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHH
Confidence            543  477778876654567777777777775521   0000000 00    000  000   0  11     1222222


Q ss_pred             c-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         213 S-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       213 ~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +     .+|  ..|||-|++.+..++++|||+|.||
T Consensus       269 ~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ig  304 (345)
T 3oix_A          269 YKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIG  304 (345)
T ss_dssp             HTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEC
Confidence            1     245  6999999999999999999999999

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.49  E-value=0.0001  Score=74.56  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             HHHHHHHHHCCCcEEEECcC-CCc-eEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEE
Q psy3862         171 GEMVEELILSGADVIKVGIG-PGS-VCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVI  238 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga-~G~-~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgv  238 (671)
                      .+.+++|++.|+++|.+.-. +.. ..++++++++|++-        .-+|.|-|.++++.++++|||.+
T Consensus        49 ~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~--------iGaGTVlt~~~a~~Ai~AGA~fI  110 (232)
T 4e38_A           49 IPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEML--------IGAGTILNGEQALAAKEAGATFV  110 (232)
T ss_dssp             HHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCE--------EEEECCCSHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCE--------EeECCcCCHHHHHHHHHcCCCEE
Confidence            47788999999999977331 110 01222222222210        14899999999999999999999

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=97.27  E-value=0.00077  Score=72.63  Aligned_cols=193  Identities=17%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             CcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEe----------------------------ec-
Q psy3862          37 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTI----------------------------HK-   87 (671)
Q Consensus        37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvI----------------------------h~-   87 (671)
                      ++.+|++++     .+++|+-||..++-.......+ .++... |+|++                            |+ 
T Consensus        46 ~~~~L~~~~-----~Gl~~~NPvglAaG~~~~~~~~-~~~~~~-g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~  118 (367)
T 3zwt_A           46 DSDMLEVRV-----LGHKFRNPVGIAAGFDKHGEAV-DGLYKM-GFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRY  118 (367)
T ss_dssp             CCGGGCEEE-----TTEEESSSEEECTTSSTTSSSH-HHHHHT-TCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECC
T ss_pred             CCCCCcEEE-----CCEEcCCCCEeCCCcCCCHHHH-HHHHhc-CcCeEEeCCccCCCCCCCCCCeEEEecCccceeecc
Confidence            578899998     5899999998885432222222 224444 34322                            11 


Q ss_pred             ---CCCHHHHHHhhhcC-c------ccccceEEecCCC------hhhHHHHHHHHHhCCCceEEEeecc--C--C-----
Q psy3862          88 ---YYTLEEWKAFAVQN-P------DVIKHVAVSSGIS------AKDLAGLKEILAALPEIEYICLDVA--N--G-----  142 (671)
Q Consensus        88 ---n~~~Eeq~~~i~~~-p------~~~~~~~v~~G~~------~~d~~rl~~l~~a~~~~d~Ivld~a--~--G-----  142 (671)
                         |..+|...+.+++. .      ....|+.+++|-+      ++|+.+..+.+..  ..|++.+|.+  |  |     
T Consensus       119 G~~N~G~~~~~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~--~ad~ielNisCPn~~G~~~l~  196 (367)
T 3zwt_A          119 GFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGP--LADYLVVNVSSPNTAGLRSLQ  196 (367)
T ss_dssp             CCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGG--GCSEEEEECCCTTSTTGGGGG
T ss_pred             CCCCccHHHHHHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhh--hCCEEEEECCCCCCCCccccC
Confidence               12233333333221 0      0123566666532      2333333333332  4678877754  1  1     


Q ss_pred             CChHHHHHHHHHHH---------hCCCceEEEEEec---cHHHHHHHHHCCCcEEEECcC----------------CCce
Q psy3862         143 YTQTFVDFVRRIRE---------MYPKHVIIAGNVV---TGEMVEELILSGADVIKVGIG----------------PGSV  194 (671)
Q Consensus       143 ~~~~~~~~ik~lr~---------~~P~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga----------------~G~~  194 (671)
                      .++.+.+.++.+++         ..|...|+.....   ..+.++.+.++|+|.|++-..                +|.+
T Consensus       197 ~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlS  276 (367)
T 3zwt_A          197 GKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLS  276 (367)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEE
T ss_pred             CHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcC
Confidence            12233344444432         1466666665543   246788899999999987421                0100


Q ss_pred             EEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         195 CTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       195 ~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       -..+.+  .++..+..++     .+|  ..|||-|++.+..++++|||+|.||
T Consensus       277 -G~~i~p--~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vg  327 (367)
T 3zwt_A          277 -GKPLRD--LSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY  327 (367)
T ss_dssp             -EGGGHH--HHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             -Ccccch--hHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence             000000  0112222221     356  6999999999999999999999999

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.24  E-value=0.0003  Score=68.83  Aligned_cols=61  Identities=21%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             HHHHHHHHCCCcEEEECcCCCce--EEEEecccCCcchhhhhccccC-CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSV--CTTRLKNKTSDFFLIQFYSCIP-QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~--~~t~v~~~~~~~~~i~~i~~~p-~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +.++.+.++|+|+|.+...-.+.  .++.+++.+|.        ..+ -+|.+-|.++++.++++|||.+ |+
T Consensus        26 ~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~~--------~~~ig~~~v~~~~~~~~a~~~Gad~i-v~   89 (205)
T 1wa3_A           26 EKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEK--------GAIIGAGTVTSVEQCRKAVESGAEFI-VS   89 (205)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHT--------TCEEEEESCCSHHHHHHHHHHTCSEE-EC
T ss_pred             HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCC--------CcEEEecccCCHHHHHHHHHcCCCEE-Ec
Confidence            56777888999999764321110  11112211110        112 2567789999999999999999 54

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=97.23  E-value=0.0026  Score=66.91  Aligned_cols=179  Identities=18%  Similarity=0.190  Sum_probs=99.1

Q ss_pred             ccCceEEecCCCccccHHHHHHHHHcCCeEEeecC-CCHHHH-------HHhhhcCcccccceEEec-CCChhhHHHHHH
Q psy3862          54 YQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY-YTLEEW-------KAFAVQNPDVIKHVAVSS-GISAKDLAGLKE  124 (671)
Q Consensus        54 ~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n-~~~Eeq-------~~~i~~~p~~~~~~~v~~-G~~~~d~~rl~~  124 (671)
                      +|+.||+.+||.++++..+....++.| .|.+-.. .+++..       .+.+ ..+ ...++.+.. |-.++++.++.+
T Consensus         2 ~l~nri~~APM~~~t~~~~r~~~~~~G-~gli~te~~~~~~~~~~~~~~~~~l-~~~-~~~~~~~QL~g~~~~~~~~aa~   78 (318)
T 1vhn_A            2 SLEVKVGLAPMAGYTDSAFRTLAFEWG-ADFAFSEMVSAKGFLMNSQKTEELL-PQP-HERNVAVQIFGSEPNELSEAAR   78 (318)
T ss_dssp             ---CEEEECCCTTTCSHHHHHHHHTTT-CCCEECSCEEHHHHHTTCHHHHHHS-CCT-TCTTEEEEEECSCHHHHHHHHH
T ss_pred             ccCCCEEECCCCCCCcHHHHHHHHHHC-cCEEEeCCEEEcccccCCHhHHHhh-hCc-CCCeEEEEeCCCCHHHHHHHHH
Confidence            467799999999988887777555554 4654332 223221       1111 111 123443322 445555655544


Q ss_pred             HHHhCCCceEEEeeccC----------C-----CChHHHHHHHHHHHh--CCCceEEEEEec---cHHHHHHHHHCCCcE
Q psy3862         125 ILAALPEIEYICLDVAN----------G-----YTQTFVDFVRRIREM--YPKHVIIAGNVV---TGEMVEELILSGADV  184 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~----------G-----~~~~~~~~ik~lr~~--~P~~~li~g~v~---t~e~a~~Li~AGaD~  184 (671)
                      .....  .|.|-++..-          |     .++...+.++.+++.  +|...++-....   +.+.++.|.++|+|.
T Consensus        79 ~a~~~--~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~  156 (318)
T 1vhn_A           79 ILSEK--YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDE  156 (318)
T ss_dssp             HHTTT--CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCE
T ss_pred             HHHHh--CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCE
Confidence            44432  5555554321          1     123445566776665  454445443221   237899999999999


Q ss_pred             EEECcCCCceEEEEecccCCcchhhhhcc-ccC--CccccccHHHHHHHHH-cCCCEEEEc
Q psy3862         185 IKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVTGEMVEELIL-SGADVIKVG  241 (671)
Q Consensus       185 IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t~~~a~~li~-aGAdgvkVG  241 (671)
                      |.+.+.....   .. ...+++..+..++ .+|  +.|||-|.+.+..+++ .|||+|-+|
T Consensus       157 i~v~g~~~~~---~~-~~~~~~~~i~~i~~~ipVi~~GgI~s~~da~~~l~~~gad~V~iG  213 (318)
T 1vhn_A          157 VFIHTRTVVQ---SF-TGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVA  213 (318)
T ss_dssp             EEEESSCTTT---TT-SSCCCGGGGGGSCCSSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred             EEEcCCCccc---cC-CCCcCHHHHHHHHcCCeEEEECCcCCHHHHHHHHHcCCCCEEEEC
Confidence            9985421100   00 0012233333332 456  6899999999999998 799999888

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=97.19  E-value=0.0012  Score=66.49  Aligned_cols=64  Identities=17%  Similarity=0.052  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +.++++.+.++|||+|.+|.+..... ..+      -.+++.+.  .+++...+.|.+.++.+.++|||.|-+
T Consensus        90 ~~~~i~~~~~aGad~I~l~~~~~~~p-~~l------~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~  155 (229)
T 3q58_A           90 YLQDVDALAQAGADIIAFDASFRSRP-VDI------DSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGT  155 (229)
T ss_dssp             SHHHHHHHHHHTCSEEEEECCSSCCS-SCH------HHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred             cHHHHHHHHHcCCCEEEECccccCCh-HHH------HHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEe
Confidence            55789999999999999988764210 000      01122221  234667889999999999999998854

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.19  E-value=0.011  Score=59.36  Aligned_cols=108  Identities=22%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             CCChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.+.++. +.++.+++.  +++.+-+..-   .....+.++.+++.||...+-+|.+.+.++++.++++|||+++..   
T Consensus        25 ~~~~~~~~~~~~al~~g--Gv~~iel~~k---~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p---   96 (224)
T 1vhc_A           25 LDNADDILPLADTLAKN--GLSVAEITFR---SEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP---   96 (224)
T ss_dssp             CSSGGGHHHHHHHHHHT--TCCEEEEETT---STTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS---
T ss_pred             CCCHHHHHHHHHHHHHc--CCCEEEEecc---CchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEEC---
Confidence            4444443 567778887  7777766522   345577888888889987777888778999999999999999542   


Q ss_pred             CceEEEEecccCCcchhhhhccc--cC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYSC--IP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~~--~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +.           +.++++....  .| +.| +.|...+..+.++|||-|++
T Consensus        97 ~~-----------d~~v~~~ar~~g~~~i~G-v~t~~e~~~A~~~Gad~vk~  136 (224)
T 1vhc_A           97 GL-----------NPKIVKLCQDLNFPITPG-VNNPMAIEIALEMGISAVKF  136 (224)
T ss_dssp             SC-----------CHHHHHHHHHTTCCEECE-ECSHHHHHHHHHTTCCEEEE
T ss_pred             CC-----------CHHHHHHHHHhCCCEEec-cCCHHHHHHHHHCCCCEEEE
Confidence            21           1122222211  22 335 99999999999999999988

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=97.16  E-value=0.0011  Score=81.81  Aligned_cols=56  Identities=18%  Similarity=0.216  Sum_probs=42.8

Q ss_pred             ccccccHHHHHHHHHcCCCEEEE-cccCCCccccce-ecccCcchhhhHHHHHHHhhh
Q psy3862         218 AGNVVTGEMVEELILSGADVIKV-GIGPGSVCTTRL-KTGVGYPQFSAVLECADAAHG  273 (671)
Q Consensus       218 aGnV~t~~~a~~li~aGAdgvkV-G~~~~~~~~Tr~-V~gv~~~~~~~~~~~~~~~~~  273 (671)
                      .+++.....++.+.++|||+|.| |.+.|.-++... ....|.|...++.++.++..+
T Consensus      1036 v~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~ 1093 (1520)
T 1ofd_A         1036 VAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093 (1520)
T ss_dssp             ECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHh
Confidence            55556677888999999999999 777665444432 356788999999999988754

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.11  E-value=0.0019  Score=65.16  Aligned_cols=64  Identities=17%  Similarity=0.060  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +.++++.+.++|||+|.++.+..... ..+      -.+++.+.  .+++...+.|.+.++.+.++|||.|-+
T Consensus        90 ~~~~i~~~~~~Gad~V~l~~~~~~~p-~~l------~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~  155 (232)
T 3igs_A           90 FLDDVDALAQAGAAIIAVDGTARQRP-VAV------EALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGT  155 (232)
T ss_dssp             SHHHHHHHHHHTCSEEEEECCSSCCS-SCH------HHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEEC
T ss_pred             cHHHHHHHHHcCCCEEEECccccCCH-HHH------HHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEE
Confidence            56789999999999999988764220 000      01122221  234667889999999999999998854

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=97.10  E-value=0.0014  Score=64.67  Aligned_cols=171  Identities=21%  Similarity=0.195  Sum_probs=100.3

Q ss_pred             cCCCcc-ccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcccccceE-E------ecCCCh-hhHHHHHHHHHhCCCc
Q psy3862          62 ANMDTV-GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVA-V------SSGISA-KDLAGLKEILAALPEI  132 (671)
Q Consensus        62 a~M~~v-t~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~~~~~~~-v------~~G~~~-~d~~rl~~l~~a~~~~  132 (671)
                      .||... ...++|.++.+.|..++ |.+ +++. .+.+++.  +..|+. .      ..++.. ...+.+.....+  ++
T Consensus        17 ~p~~~~~~~~~~a~~~~~~Ga~~i-~~~-~~~~-i~~i~~~--~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~--Ga   89 (223)
T 1y0e_A           17 EPLHSSFIMSKMALAAYEGGAVGI-RAN-TKED-ILAIKET--VDLPVIGIVKRDYDHSDVFITATSKEVDELIES--QC   89 (223)
T ss_dssp             STTCCHHHHHHHHHHHHHHTCSEE-EEE-SHHH-HHHHHHH--CCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH--TC
T ss_pred             CCCCCCccHHHHHHHHHHCCCeee-ccC-CHHH-HHHHHHh--cCCCEEeeeccCCCccccccCCcHHHHHHHHhC--CC
Confidence            467653 45789999988887775 332 3433 3333221  011220 0      011110 134566666777  77


Q ss_pred             eEEEeeccCCC-C-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecc-cCCcchhh
Q psy3862         133 EYICLDVANGY-T-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKN-KTSDFFLI  209 (671)
Q Consensus       133 d~Ivld~a~G~-~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~-~~~~~~~i  209 (671)
                      +.+++...... + ..+.+.++.+++.+|.. ++...+.+.+.++.+.++|+|+|.+.. +|....+.-.. ..+++..+
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~-~v~~~~~t~~e~~~~~~~G~d~i~~~~-~g~t~~~~~~~~~~~~~~~~  167 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTHAPNV-EIMADIATVEEAKNAARLGFDYIGTTL-HGYTSYTQGQLLYQNDFQFL  167 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHHCTTS-EEEEECSSHHHHHHHHHTTCSEEECTT-TTSSTTSTTCCTTHHHHHHH
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHhCCCc-eEEecCCCHHHHHHHHHcCCCEEEeCC-CcCcCCCCCCCCCcccHHHH
Confidence            88877654321 2 34567777777778754 444477888889999999999996532 22110000000 01122222


Q ss_pred             hhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         210 QFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       210 ~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+.   .+|  +.|||.|.+.+..++++|||++-||
T Consensus       168 ~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG  204 (223)
T 1y0e_A          168 KDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG  204 (223)
T ss_dssp             HHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence            2222   356  6999999999999999999999998

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=97.08  E-value=0.0031  Score=62.87  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcccccce-EEe------cCCCh-hhHHHHHHHHHhCCCceEEEeeccC
Q psy3862          70 FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHV-AVS------SGISA-KDLAGLKEILAALPEIEYICLDVAN  141 (671)
Q Consensus        70 ~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~~~~~~-~v~------~G~~~-~d~~rl~~l~~a~~~~d~Ivld~a~  141 (671)
                      .+++.++.+.|..++ |.+ +++ +.+.+++.-  ..|+ .+.      ..+.. ...+++...+.+  +++.+.++...
T Consensus        39 ~~~a~~~~~~G~~~i-~~~-~~~-~i~~i~~~~--~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~--Gad~V~l~~~~  111 (234)
T 1yxy_A           39 PLMAKAAQEAGAVGI-RAN-SVR-DIKEIQAIT--DLPIIGIIKKDYPPQEPFITATMTEVDQLAAL--NIAVIAMDCTK  111 (234)
T ss_dssp             HHHHHHHHHHTCSEE-EEE-SHH-HHHHHHTTC--CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTT--TCSEEEEECCS
T ss_pred             HHHHHHHHHCCCcEe-ecC-CHH-HHHHHHHhC--CCCEEeeEcCCCCccccccCChHHHHHHHHHc--CCCEEEEcccc
Confidence            689998888887775 333 343 344444321  1222 110      01111 134567777776  78888876543


Q ss_pred             CC-C--hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEE--EECc-CCCceEEEEecccCCcchhhhhcc--
Q psy3862         142 GY-T--QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVI--KVGI-GPGSVCTTRLKNKTSDFFLIQFYS--  213 (671)
Q Consensus       142 G~-~--~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~I--vVdg-a~G~~~~t~v~~~~~~~~~i~~i~--  213 (671)
                      .. +  ....+.++.+++.+|.. .+...+.+.+.++.+.++|+|+|  .+.+ .+++-     ....+++..+..+.  
T Consensus       112 ~~~~~~~~~~~~i~~i~~~~~~~-~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~-----~~~~~~~~~i~~~~~~  185 (234)
T 1yxy_A          112 RDRHDGLDIASFIRQVKEKYPNQ-LLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSR-----QEAGPDVALIEALCKA  185 (234)
T ss_dssp             SCCTTCCCHHHHHHHHHHHCTTC-EEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSC-----CSSSCCHHHHHHHHHT
T ss_pred             cCCCCCccHHHHHHHHHHhCCCC-eEEEeCCCHHHHHHHHHcCCCEEeeeccccCCCCc-----CCCCCCHHHHHHHHhC
Confidence            21 2  24567777777777744 45557788899999999999999  3433 22210     00112333333332  


Q ss_pred             ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 ~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+|  +.|||.|.+.+..++++|||++-||
T Consensus       186 ~ipvia~GGI~s~~~~~~~~~~Gad~v~vG  215 (234)
T 1yxy_A          186 GIAVIAEGKIHSPEEAKKINDLGVAGIVVG  215 (234)
T ss_dssp             TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred             CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence            356  7999999999999999999999998

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.06  E-value=0.014  Score=56.88  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             CCChhhHHHH-HHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCC-CceEEEEEeccHHHHHHHHHCCCcEEEECcC
Q psy3862         113 GISAKDLAGL-KEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYP-KHVIIAGNVVTGEMVEELILSGADVIKVGIG  190 (671)
Q Consensus       113 G~~~~d~~rl-~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P-~~~li~g~v~t~e~a~~Li~AGaD~IvVdga  190 (671)
                      +.+.++..++ +.+.+.  +++.+.+....   ....+.++.+|+.+| ...+-++.+.+.+.++.++++|+|+| +.  
T Consensus        18 ~~~~~~~~~~~~~~~~~--G~~~iev~~~~---~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~--   89 (205)
T 1wa3_A           18 ANSVEEAKEKALAVFEG--GVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VS--   89 (205)
T ss_dssp             CSSHHHHHHHHHHHHHT--TCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-EC--
T ss_pred             cCCHHHHHHHHHHHHHC--CCCEEEEeCCC---hhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-Ec--
Confidence            3444444443 334444  56777554221   234556777776665 33344446678999999999999999 42  


Q ss_pred             CCceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         191 PGSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       191 ~G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      ++..           -.+++.+.  .+|+--|+.|...++.++++|||.+++
T Consensus        90 ~~~~-----------~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~  130 (205)
T 1wa3_A           90 PHLD-----------EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKL  130 (205)
T ss_dssp             SSCC-----------HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEE
T ss_pred             CCCC-----------HHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEE
Confidence            3211           11222222  234333778999999999999999986

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=97.06  E-value=0.012  Score=59.04  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=76.2

Q ss_pred             CCChhh-HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKD-LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d-~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.+.++ .+.++.+++.  +++.+-+..-   .....+.++.+++.||...+-+|.+.+.++++.++++|||++..   +
T Consensus        34 ~~~~~~~~~~~~al~~g--Gv~~iel~~k---~~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~---p  105 (225)
T 1mxs_A           34 IAREEDILPLADALAAG--GIRTLEVTLR---SQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT---P  105 (225)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCCEEEEESS---STHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC---S
T ss_pred             CCCHHHHHHHHHHHHHC--CCCEEEEecC---CccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEe---C
Confidence            334444 3567778887  7777666522   34566788888888998888888888899999999999999964   2


Q ss_pred             CceEEEEecccCCcchhhhhccc--cC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYSC--IP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~~--~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +.           +.++++....  +| +-| +.|...+..++++|||-|++
T Consensus       106 ~~-----------d~~v~~~~~~~g~~~i~G-~~t~~e~~~A~~~Gad~vk~  145 (225)
T 1mxs_A          106 GI-----------TEDILEAGVDSEIPLLPG-ISTPSEIMMGYALGYRRFKL  145 (225)
T ss_dssp             SC-----------CHHHHHHHHHCSSCEECE-ECSHHHHHHHHTTTCCEEEE
T ss_pred             CC-----------CHHHHHHHHHhCCCEEEe-eCCHHHHHHHHHCCCCEEEE
Confidence            21           1222222211  23 334 99999999999999999988

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.04  E-value=0.001  Score=66.86  Aligned_cols=58  Identities=26%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-cccC----CccccccHHHHHHHHHcCCCEEE
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-SCIP----QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~~~p----~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      .+.+++|++.|+++|.+.--.           ......+..+ ..+|    -+|.+.+.+.+..++++|||++-
T Consensus        32 ~~~~~al~~gGv~~iel~~k~-----------~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~   94 (224)
T 1vhc_A           32 LPLADTLAKNGLSVAEITFRS-----------EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVV   94 (224)
T ss_dssp             HHHHHHHHHTTCCEEEEETTS-----------TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEEeccC-----------chHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEE
Confidence            467899999999999663210           0112222211 2233    47888899999999999999993

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=97.04  E-value=0.0092  Score=61.00  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=107.0

Q ss_pred             CcccCceEEecCCCccccHHHHHHHHHcCC--eEE-eecCCC---HH--HHHHhhhcCcccccceEE--e-cCC-ChhhH
Q psy3862          52 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL--FTT-IHKYYT---LE--EWKAFAVQNPDVIKHVAV--S-SGI-SAKDL  119 (671)
Q Consensus        52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~gg--lgv-Ih~n~~---~E--eq~~~i~~~p~~~~~~~v--~-~G~-~~~d~  119 (671)
                      +.+++.-++...-.+-+...|..++...|-  +.+ ++|-..   ..  ...+++.+     ..+.+  + .|+ +.+|-
T Consensus        15 ~~~f~SRl~~Gtgky~~~~~~~~a~~asg~e~vtva~rR~~~~~~~~~~~~~~~i~~-----~~~~~lpNTag~~ta~eA   89 (265)
T 1wv2_A           15 GRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPP-----DRYTILPNTAGCYDAVEA   89 (265)
T ss_dssp             TEEESCCEEECCSCSSSHHHHHHHHHHSCCSEEEEEGGGCCC-------------CT-----TTSEEEEECTTCCSHHHH
T ss_pred             CEEeecceEEecCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccCCCcchHHhhhhh-----cCCEECCcCCCCCCHHHH
Confidence            555566666655555556677777766653  233 555321   11  11122211     01221  1 233 33333


Q ss_pred             HHHHHHHHh-CCCceEEEeeccCCC------ChHHHHHHHHHHHhCCCceEEE-EEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         120 AGLKEILAA-LPEIEYICLDVANGY------TQTFVDFVRRIREMYPKHVIIA-GNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       120 ~rl~~l~~a-~~~~d~Ivld~a~G~------~~~~~~~ik~lr~~~P~~~li~-g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      -+...+-.+ .-+.++|-+.....+      +...++..+.+.+   .+.++. -...+...+++|.++|+|+|..-+++
T Consensus        90 v~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~---~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~p  166 (265)
T 1wv2_A           90 VRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVK---DGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGL  166 (265)
T ss_dssp             HHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHT---TTCEEEEEECSCHHHHHHHHHSCCSEEEECSSS
T ss_pred             HHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCcc
Confidence            233233222 225567766544332      2334444444433   233333 24578999999999999999774532


Q ss_pred             -CceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcch--hhh
Q psy3862         192 -GSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQ--FSA  263 (671)
Q Consensus       192 -G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~--~~~  263 (671)
                       |+.      ....+..+++.+.   .+|  ++|||.|++.++.++++|||||.||        |.+. ....|+  ..+
T Consensus       167 IGsG------~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVg--------SAI~-~a~dP~~ma~a  231 (265)
T 1wv2_A          167 IGSG------LGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMN--------TAIA-HAKDPVMMAEA  231 (265)
T ss_dssp             TTCC------CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEES--------HHHH-TSSSHHHHHHH
T ss_pred             CCCC------CCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC--------hHHh-CCCCHHHHHHH
Confidence             221      0112344444442   355  6999999999999999999999999        5554 456687  555


Q ss_pred             HHHHHHHhh
Q psy3862         264 VLECADAAH  272 (671)
Q Consensus       264 ~~~~~~~~~  272 (671)
                      ..++.++-+
T Consensus       232 f~~Av~aGr  240 (265)
T 1wv2_A          232 MKHAIVAGR  240 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555544433

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=97.00  E-value=0.0024  Score=69.69  Aligned_cols=84  Identities=19%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             CC-CceEEEEEec---cHHHHHHHHHCCCcEEEECcCCCc-eEEE-------Eec--ccCC-cchhhhhcc-----ccC-
Q psy3862         158 YP-KHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGS-VCTT-------RLK--NKTS-DFFLIQFYS-----CIP-  216 (671)
Q Consensus       158 ~P-~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~G~-~~~t-------~v~--~~~~-~~~~i~~i~-----~~p-  216 (671)
                      .| ...|+..+..   ..+-|+.+.++|+|.|++-.--.. .-+.       -++  ..+| ++..+..+.     .+| 
T Consensus       269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPI  348 (415)
T 3i65_A          269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI  348 (415)
T ss_dssp             CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCE
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCE
Confidence            46 5667776553   256788999999999987541110 0000       000  0000 112222221     356 


Q ss_pred             -CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 -QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 -~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       ..|||.|++.+..++++|||+|.||
T Consensus       349 Ig~GGI~s~eDa~e~l~aGAd~VqIg  374 (415)
T 3i65_A          349 IASGGIFSGLDALEKIEAGASVCQLY  374 (415)
T ss_dssp             EECSSCCSHHHHHHHHHHTEEEEEES
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEc
Confidence             6999999999999999999999999

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.00  E-value=0.02  Score=56.91  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CCChhh-HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC
Q psy3862         113 GISAKD-LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP  191 (671)
Q Consensus       113 G~~~~d-~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~  191 (671)
                      +.+.++ .+.++.+++.  +++.+-+..-   .....+.++.+++.||...+-+|.+.+.++++.++++|||.+...   
T Consensus        24 ~~~~~~~~~~~~al~~g--Gv~~iel~~k---~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p---   95 (214)
T 1wbh_A           24 VKKLEHAVPMAKALVAG--GVRVLNVTLR---TECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP---   95 (214)
T ss_dssp             CSSGGGHHHHHHHHHHT--TCCEEEEESC---STTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES---
T ss_pred             CCCHHHHHHHHHHHHHc--CCCEEEEeCC---ChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcC---
Confidence            344444 3567778887  7777666522   244567888888889987777888888999999999999999642   


Q ss_pred             CceEEEEecccCCcchhhhhcc--ccC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         192 GSVCTTRLKNKTSDFFLIQFYS--CIP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       192 G~~~~t~v~~~~~~~~~i~~i~--~~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      +.           +.++++...  .+| +-| +.|...+..+.++|||-|++
T Consensus        96 ~~-----------d~~v~~~~~~~g~~~i~G-~~t~~e~~~A~~~Gad~v~~  135 (214)
T 1wbh_A           96 GL-----------TEPLLKAATEGTIPLIPG-ISTVSELMLGMDYGLKEFKF  135 (214)
T ss_dssp             SC-----------CHHHHHHHHHSSSCEEEE-ESSHHHHHHHHHTTCCEEEE
T ss_pred             CC-----------CHHHHHHHHHhCCCEEEe-cCCHHHHHHHHHCCCCEEEE
Confidence            21           112222221  123 234 99999999999999999988

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.92  E-value=0.0046  Score=61.19  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCC-cchhhhhccccC----CccccccHHHHHHHHHcCCCEEE
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS-DFFLIQFYSCIP----QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~-~~~~i~~i~~~p----~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      .+.+++|++.|+++|.+.-            +.+ ....+..+.. |    -+|.+.+.+.+..++++|||++-
T Consensus        28 ~~~~~~l~~gGv~~iel~~------------k~~~~~~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~   88 (207)
T 2yw3_A           28 LGLARVLEEEGVGALEITL------------RTEKGLEALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLV   88 (207)
T ss_dssp             HHHHHHHHHTTCCEEEEEC------------SSTHHHHHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEEeC------------CChHHHHHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEE
Confidence            4778999999999996521            111 1222222222 3    47888899999999999999994

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.88  E-value=0.0015  Score=65.25  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=40.6

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-cccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-SCIP----QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~~~p----~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+++|++.|+++|.+.--.           ......+..+ ..+|    -+|.+.+.+.+..++++|||++-.|
T Consensus        31 ~~~~~al~~gGv~~iel~~k~-----------~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p   95 (214)
T 1wbh_A           31 VPMAKALVAGGVRVLNVTLRT-----------ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP   95 (214)
T ss_dssp             HHHHHHHHHTTCCEEEEESCS-----------TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES
T ss_pred             HHHHHHHHHcCCCEEEEeCCC-----------hhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcC
Confidence            367899999999999663210           0112222211 2233    4889999999999999999999533

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=96.79  E-value=0.0059  Score=67.31  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             CceEEEEEec---cHHHHHHHHHCCCcEEEECcCCCce-EEEEeccc---------CC-cchhhhhcc-----ccC--Cc
Q psy3862         160 KHVIIAGNVV---TGEMVEELILSGADVIKVGIGPGSV-CTTRLKNK---------TS-DFFLIQFYS-----CIP--QA  218 (671)
Q Consensus       160 ~~~li~g~v~---t~e~a~~Li~AGaD~IvVdga~G~~-~~t~v~~~---------~~-~~~~i~~i~-----~~p--~a  218 (671)
                      ...++.....   ..+-|+.+.++|+|.|++....... -...+...         .+ .+.++..+.     .+|  ..
T Consensus       300 V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~  379 (443)
T 1tv5_A          300 VFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS  379 (443)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEE
Confidence            4455554432   1345889999999999885521100 00000000         00 122222221     356  69


Q ss_pred             cccccHHHHHHHHHcCCCEEEEc
Q psy3862         219 GNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       219 GnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      |||-|++.+...+++|||+|.||
T Consensus       380 GGI~s~~DA~e~l~aGAd~Vqig  402 (443)
T 1tv5_A          380 GGIFSGLDALEKIEAGASVCQLY  402 (443)
T ss_dssp             SSCCSHHHHHHHHHTTEEEEEES
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEc
Confidence            99999999999999999999999

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=96.74  E-value=0.0095  Score=63.47  Aligned_cols=40  Identities=13%  Similarity=0.080  Sum_probs=31.5

Q ss_pred             CCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcC
Q psy3862          36 RSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG   80 (671)
Q Consensus        36 ~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~g   80 (671)
                      +.+.||++++     -+++|+-||..++-....+.+...++...|
T Consensus        32 ~~~~~L~v~~-----~Gl~f~NPvglAaG~~~~~~e~~~~l~~~G   71 (354)
T 3tjx_A           32 RGSMSLQVNL-----LNNTFANPFMNAAGVMCTTTEELVAMTESA   71 (354)
T ss_dssp             -CCCCCCEEE-----TTEEESSSEEECTTSSCSSHHHHHHHHHSS
T ss_pred             CCCCceeEEE-----CCEEcCCCcEEccCCCCCCHHHHHHHHHcC
Confidence            4788999999     599999999998754555677777777765

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=96.69  E-value=0.0018  Score=65.08  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-cccC----CccccccHHHHHHHHHcCCCEEE
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-SCIP----QAGNVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~~~p----~aGnV~t~~~a~~li~aGAdgvk  239 (671)
                      .+.+++|++.|+++|.+.--.           ......+..+ ..+|    -+|.+.+.+.+..++++|||++-
T Consensus        41 ~~~~~al~~gGv~~iel~~k~-----------~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~  103 (225)
T 1mxs_A           41 LPLADALAAGGIRTLEVTLRS-----------QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVV  103 (225)
T ss_dssp             HHHHHHHHHTTCCEEEEESSS-----------THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEE
T ss_pred             HHHHHHHHHCCCCEEEEecCC-----------ccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEE
Confidence            467899999999999663210           0011222211 2233    47899999999999999999994

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=96.65  E-value=0.0096  Score=59.78  Aligned_cols=66  Identities=26%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|.+..-.++..     .....+..+..+.   .+|  +.|+|-+.+.+..++++|||+|-+|
T Consensus        33 ~~~a~~~~~~Gad~i~v~d~~~~~~-----~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg  103 (253)
T 1thf_D           33 VELGKFYSEIGIDELVFLDITASVE-----KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN  103 (253)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSCSSS-----HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHcCCCEEEEECCchhhc-----CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            4678889999999987654322210     0001122222221   246  6899999999999999999999887

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=96.64  E-value=0.042  Score=56.25  Aligned_cols=182  Identities=11%  Similarity=0.050  Sum_probs=92.1

Q ss_pred             CCcccCceEEecCCCccccHHHHHHHHHcCCeEE-ee--c----CCCHHHHHHhhhcCcccccceEEec-C-CChhhHHH
Q psy3862          51 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT-IH--K----YYTLEEWKAFAVQNPDVIKHVAVSS-G-ISAKDLAG  121 (671)
Q Consensus        51 ~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih--~----n~~~Eeq~~~i~~~p~~~~~~~v~~-G-~~~~d~~r  121 (671)
                      .+.+|+-|++.+.-+.-...++..++.+.|.--+ ++  +    |.+.+...+++++   ...++..+. + .+.++..+
T Consensus         7 ~~~~~~~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~---~~~~~~pn~~~~~~~~~~~~   83 (264)
T 1xm3_A            7 GGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDL---SKYTLLPNTAGASTAEEAVR   83 (264)
T ss_dssp             TTEEESCCEEEECSCSSCHHHHHHHHHHHTCSEEEEETTSSTTC-------CTTCCG---GGSEEEEECTTCSSHHHHHH
T ss_pred             CCEEecCCCEEEecCCCCHHHHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHh---cCCeEcCCccccCCHHHHHH
Confidence            4788999999886666555666778888774322 33  1    2222222222211   111111121 2 23333223


Q ss_pred             HHHHHHhCCCceEEEeeccCCC---ChHHHHHHHHHHHhC-CCceEEEEEeccHHHHHHHHHCCCcEEEECcCC-CceEE
Q psy3862         122 LKEILAALPEIEYICLDVANGY---TQTFVDFVRRIREMY-PKHVIIAGNVVTGEMVEELILSGADVIKVGIGP-GSVCT  196 (671)
Q Consensus       122 l~~l~~a~~~~d~Ivld~a~G~---~~~~~~~ik~lr~~~-P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~-G~~~~  196 (671)
                      ..++.....+.+++.++.....   .....+.++..++.. |...++.-...+.++++++.++|+|+|+.-++. |+.  
T Consensus        84 f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--  161 (264)
T 1xm3_A           84 IARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--  161 (264)
T ss_dssp             HHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--
T ss_pred             HHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--
Confidence            3233332223345544433211   122233344333321 222333233457789999999999999442211 111  


Q ss_pred             EEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         197 TRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       197 t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +    ...+...++.+.   .+|  +.|||.|.+.++.++++|||||-||
T Consensus       162 ~----~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVG  207 (264)
T 1xm3_A          162 Q----GILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLN  207 (264)
T ss_dssp             C----CCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             C----CCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence            0    011122333332   456  5889999999999999999999999

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.62  E-value=0.015  Score=60.13  Aligned_cols=63  Identities=17%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+...++||++|.+=.-++.-        ..++..+..+.   .+|  .-+-+.|..++..+.++|||+|-+|
T Consensus        75 ~~~A~~y~~~GA~~isvltd~~~f--------~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi  142 (272)
T 3qja_A           75 AKLAQAYQDGGARIVSVVTEQRRF--------QGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLI  142 (272)
T ss_dssp             HHHHHHHHHTTCSEEEEECCGGGH--------HHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEecChhhc--------CCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEe
Confidence            478888999999999652211100        00111122221   345  3556789999999999999999988

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.60  E-value=0.0087  Score=59.38  Aligned_cols=68  Identities=24%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         169 VTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       169 ~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+.++.+.++|+|.|.+..-.++.     ......+..+..+.   .+|  +.|++.+.+.+..++++|||+|-+|
T Consensus        34 ~~~~~a~~~~~~G~d~i~v~~~~~~~-----~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~  106 (253)
T 1h5y_A           34 DPVEMAVRYEEEGADEIAILDITAAP-----EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN  106 (253)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEECCCCT-----TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             cHHHHHHHHHHcCCCEEEEEeCCccc-----cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            34688899999999988664311110     00000112222221   246  6899999999999999999999988

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=96.52  E-value=0.0027  Score=63.48  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+.++.+.++|+|.|-++.-.|+-     .. .+....+..+.   .+|  +.|+|-+.+.+..++++|||+|-+|
T Consensus        33 ~~~~a~~~~~~Gad~i~v~~~d~~~-----~~-~~~~~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg  103 (244)
T 2y88_A           33 AVDAALGWQRDGAEWIHLVDLDAAF-----GR-GSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVG  103 (244)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEHHHHT-----TS-CCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEEcCcccc-----cC-CChHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            3578889999999999876422210     00 01112222231   356  6899999999999999999999888

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=96.52  E-value=0.026  Score=56.95  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      +.++.+++.  ++..+-+..-   ..+..+.++.+++.+|...+-+|.+.+.++++.++++|||+|+.   ++.      
T Consensus        50 ~~a~al~~g--Gi~~iEvt~~---t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvs---P~~------  115 (232)
T 4e38_A           50 PLGKVLAEN--GLPAAEITFR---SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVS---PGF------  115 (232)
T ss_dssp             HHHHHHHHT--TCCEEEEETT---STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEEC---SSC------
T ss_pred             HHHHHHHHC--CCCEEEEeCC---CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEe---CCC------
Confidence            445667776  6666554311   24457888888888998777778889999999999999999964   321      


Q ss_pred             cccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEE
Q psy3862         200 KNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       200 ~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                           +..+++.+.  .+|.-=|+.|...+..++++|||.||+
T Consensus       116 -----~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~Gad~vK~  153 (232)
T 4e38_A          116 -----NPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTLKF  153 (232)
T ss_dssp             -----CHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEE
T ss_pred             -----CHHHHHHHHHcCCCEEcCCCCHHHHHHHHHcCCCEEEE
Confidence                 222333332  245323588999999999999999998

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=96.43  E-value=0.0068  Score=60.70  Aligned_cols=65  Identities=15%  Similarity=0.149  Sum_probs=44.3

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|-++.-.|+.     ...... ..+..+.   .+|  +.|+|.|.+.+..++++|||+|-+|
T Consensus        35 ~~~a~~~~~~Gad~i~v~~~d~~~-----~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg  104 (244)
T 1vzw_A           35 LEAALAWQRSGAEWLHLVDLDAAF-----GTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLG  104 (244)
T ss_dssp             HHHHHHHHHTTCSEEEEEEHHHHH-----TSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEecCchhh-----cCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            577889999999999775422210     000011 2222221   356  6899999999999999999999877

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=96.30  E-value=0.0048  Score=62.13  Aligned_cols=66  Identities=26%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             ccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         169 VTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       169 ~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+.++.+.++|+|.|.+-.  +.+.       ...+++.++..+.   .+|  +.|||.|.+.+..++++|||+|-+|
T Consensus        36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~-------~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig  108 (247)
T 3tdn_A           36 LLRDWVVEVEKRGAGEILLTSIDRDGT-------KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN  108 (247)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTTC-------SSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred             CHHHHHHHHHHcCCCEEEEEecCcccC-------CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence            346889999999999996522  1110       0112333333332   356  6999999999999999999999877

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=96.22  E-value=0.029  Score=56.16  Aligned_cols=64  Identities=27%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             HHHHHHHHHCCCcEEEEC-c-CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVG-I-GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVd-g-a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|.+- . +.+..       ....+.++..+.   .+|  +.|++.|.+.+..++++|||+|-+|
T Consensus        34 ~~~a~~~~~~Gad~i~v~d~~~~~~~-------~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg  104 (252)
T 1ka9_F           34 VEAARAYDEAGADELVFLDISATHEE-------RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN  104 (252)
T ss_dssp             HHHHHHHHHHTCSCEEEEECCSSTTC-------HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEEcCCccccC-------ccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            577888999999987552 1 11110       001122222221   356  6899999999999999999999888

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=96.20  E-value=0.012  Score=60.69  Aligned_cols=125  Identities=16%  Similarity=0.108  Sum_probs=74.4

Q ss_pred             CCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcc-cccceeeecc-cChhhHHHHHHcCCcEEEEcccccccccc
Q psy3862         341 DTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHVADGGC-TSPGDVAKAMGAGADFVMLGGMFAGHDQS  418 (671)
Q Consensus       341 DtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~-~~~~v~~~~~-~~~~~~~~l~~aG~d~i~id~~a~gh~~~  418 (671)
                      ..-+..+++..+++.|.=|+|=--.++||..++....++ -+..+.-..- ++++++.++.+.+.+|+... +..|+.-.
T Consensus       110 ~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~v-s~~GvTG~  188 (271)
T 3nav_A          110 YARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLL-SRAGVTGA  188 (271)
T ss_dssp             HHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEEC-CCC-----
T ss_pred             HHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEE-eccCCCCc
Confidence            344567899999999999988777777764444432221 1223333333 34578888888888998875 44444311


Q ss_pred             ccccccccccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         419 GGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      .-..   .......+..+|++.. .+++|+-+.+.+.++ ++.+|||+|.||.
T Consensus       189 ~~~~---~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS  238 (271)
T 3nav_A          189 ETKA---NMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS  238 (271)
T ss_dssp             ---C---CHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             ccCC---chhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence            1100   0111123444555543 255566577788877 8999999999994

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.18  E-value=0.14  Score=49.85  Aligned_cols=101  Identities=18%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEE-EEeccHHHHHHHHHCCCcEEEECcCCCceEEEE
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIA-GNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  198 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~-g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~  198 (671)
                      +.++.+.+.  +++.+.+....   ....+.++++++.+|.-.+++ |.+.+.+.++.++++|+|.|.+...        
T Consensus        23 ~~~~~~~~~--G~~~i~l~~~~---~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~~--------   89 (212)
T 2v82_A           23 AHVGAVIDA--GFDAVEIPLNS---PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNI--------   89 (212)
T ss_dssp             HHHHHHHHH--TCCEEEEETTS---TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSSC--------
T ss_pred             HHHHHHHHC--CCCEEEEeCCC---hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCCC--------
Confidence            345566666  77888776543   223456666665565434443 4566788999999999999964221        


Q ss_pred             ecccCCcchhhhhccc--cC-CccccccHHHHHHHHHcCCCEEEE
Q psy3862         199 LKNKTSDFFLIQFYSC--IP-QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       199 v~~~~~~~~~i~~i~~--~p-~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                            +..+++.+..  .+ ..| +.|.+.+..+.++|+|.|.+
T Consensus        90 ------~~~~~~~~~~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v  127 (212)
T 2v82_A           90 ------HSEVIRRAVGYGMTVCPG-CATATEAFTALEAGAQALKI  127 (212)
T ss_dssp             ------CHHHHHHHHHTTCEEECE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             ------CHHHHHHHHHcCCCEEee-cCCHHHHHHHHHCCCCEEEE
Confidence                  1112222211  11 344 78889999999999999875

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=96.08  E-value=0.025  Score=55.60  Aligned_cols=27  Identities=22%  Similarity=0.555  Sum_probs=20.3

Q ss_pred             eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +.+||+....++.+++.+|||+|.+|.
T Consensus       179 ia~GGI~~~~~~~~~~~~Gad~v~vG~  205 (223)
T 1y0e_A          179 IAEGNVITPDMYKRVMDLGVHCSVVGG  205 (223)
T ss_dssp             EEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             EEecCCCCHHHHHHHHHcCCCEEEECh
Confidence            456775466666668899999999985

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=95.95  E-value=0.021  Score=58.92  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=64.9

Q ss_pred             HHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecc
Q psy3862         122 LKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKN  201 (671)
Q Consensus       122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~  201 (671)
                      +.+....  ++|.|++-.+--....+.++++..++ +  +..+...+.+.+.++.+.++|+|+|-+.....+.       
T Consensus       128 v~~A~~~--GAD~VlLi~a~l~~~~l~~l~~~a~~-l--Gl~~lvev~t~ee~~~A~~~Gad~IGv~~r~l~~-------  195 (272)
T 3qja_A          128 IHEARAH--GADMLLLIVAALEQSVLVSMLDRTES-L--GMTALVEVHTEQEADRALKAGAKVIGVNARDLMT-------  195 (272)
T ss_dssp             HHHHHHT--TCSEEEEEGGGSCHHHHHHHHHHHHH-T--TCEEEEEESSHHHHHHHHHHTCSEEEEESBCTTT-------
T ss_pred             HHHHHHc--CCCEEEEecccCCHHHHHHHHHHHHH-C--CCcEEEEcCCHHHHHHHHHCCCCEEEECCCcccc-------
Confidence            4444455  88888774331112333344443333 2  2222335678888988889999999775422211       


Q ss_pred             cCCcch----hhhhcc-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         202 KTSDFF----LIQFYS-CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       202 ~~~~~~----~i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+++.    +.+.+. .+|  +.|||.|.+.++.+.++||||+-||
T Consensus       196 ~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVG  242 (272)
T 3qja_A          196 LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVG  242 (272)
T ss_dssp             CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred             cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            001111    112221 234  7999999999999999999999999

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=95.95  E-value=0.032  Score=55.15  Aligned_cols=144  Identities=13%  Similarity=0.085  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcCCeEEeecC--CC-HHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChH
Q psy3862          70 FEMAKHLAKHGLFTTIHKY--YT-LEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQT  146 (671)
Q Consensus        70 ~~lA~Ala~~gglgvIh~n--~~-~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~  146 (671)
                      .+++.++ ..||+.++--.  .+ ..+..+..++ |+    ..+..|+ .-+.++++..+.+  ++++++..   +....
T Consensus        28 ~~~~~~l-~~gGv~~iel~~k~~~~~~~i~~~~~-~~----~~~gag~-vl~~d~~~~A~~~--GAd~v~~~---~~d~~   95 (207)
T 2yw3_A           28 LGLARVL-EEEGVGALEITLRTEKGLEALKALRK-SG----LLLGAGT-VRSPKEAEAALEA--GAAFLVSP---GLLEE   95 (207)
T ss_dssp             HHHHHHH-HHTTCCEEEEECSSTHHHHHHHHHTT-SS----CEEEEES-CCSHHHHHHHHHH--TCSEEEES---SCCHH
T ss_pred             HHHHHHH-HHcCCCEEEEeCCChHHHHHHHHHhC-CC----CEEEeCe-EeeHHHHHHHHHc--CCCEEEcC---CCCHH
Confidence            5667654 45677654322  11 2233344444 32    2223343 2234777777777  88888754   22344


Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC---CceEEEEecccCCcchhhhhccccC--Ccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP---GSVCTTRLKNKTSDFFLIQFYSCIP--QAGNV  221 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~---G~~~~t~v~~~~~~~~~i~~i~~~p--~aGnV  221 (671)
                      +.+..++   ..+  .++.| +.|.+.+..+.++|+|+|.+-.+.   |....+.++..+|         .+|  +.|||
T Consensus        96 v~~~~~~---~g~--~~i~G-~~t~~e~~~A~~~Gad~v~~fpa~~~gG~~~lk~l~~~~~---------~ipvvaiGGI  160 (207)
T 2yw3_A           96 VAALAQA---RGV--PYLPG-VLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFP---------EVRFLPTGGI  160 (207)
T ss_dssp             HHHHHHH---HTC--CEEEE-ECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHHHCT---------TCEEEEBSSC
T ss_pred             HHHHHHH---hCC--CEEec-CCCHHHHHHHHHCCCCEEEEecCccccCHHHHHHHHhhCC---------CCcEEEeCCC
Confidence            4444443   221  24444 678888999999999999883311   1111111111111         234  69999


Q ss_pred             ccHHHHHHHHHcCCCEEEEc
Q psy3862         222 VTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       222 ~t~~~a~~li~aGAdgvkVG  241 (671)
                      . .+.+.+++++||+++-||
T Consensus       161 ~-~~n~~~~l~aGa~~vavg  179 (207)
T 2yw3_A          161 K-EEHLPHYAALPNLLAVGG  179 (207)
T ss_dssp             C-GGGHHHHHTCSSBSCEEE
T ss_pred             C-HHHHHHHHhCCCcEEEEe
Confidence            6 589999999999999887

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=95.81  E-value=0.012  Score=60.30  Aligned_cols=199  Identities=14%  Similarity=0.077  Sum_probs=102.9

Q ss_pred             CcccCceEEecCCCccccHHHHHHHHHcCC--eEE-eecCCC--H--HHHHHhhhcCcccccceEEecCC-ChhhHHHHH
Q psy3862          52 KTYQGVPIIAANMDTVGTFEMAKHLAKHGL--FTT-IHKYYT--L--EEWKAFAVQNPDVIKHVAVSSGI-SAKDLAGLK  123 (671)
Q Consensus        52 ~~~l~~Piv~a~M~~vt~~~lA~Ala~~gg--lgv-Ih~n~~--~--Eeq~~~i~~~p~~~~~~~v~~G~-~~~d~~rl~  123 (671)
                      +.+++.-++...-.+-+...|..++...|-  +.+ ++|-..  .  +...+++.+.+  .-|-  -.|+ +.+|..++.
T Consensus         8 ~~~~~srl~~Gtgky~~~~~~~~ai~asg~eivtva~rR~~~~~~~~~~~~~~i~~~~--~lpn--taG~~taeeAv~~a   83 (268)
T 2htm_A            8 PVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVR--LLPN--TAGARTAEEAVRLA   83 (268)
T ss_dssp             TEEECCSEEEECSSCSCHHHHHHHHHHTTCSEEEEEEEECC-------CHHHHTTTSE--EEEB--CTTCCSHHHHHHHH
T ss_pred             CEEeecceEEecCCCCCHHHHHHHHHHhCCCEEEEEccccCCCCCCcccHHHHHhhhh--ccCc--ccCCCCHHHHHHHH
Confidence            444555566554445556678887777663  233 555321  1  11223332111  0000  1233 344444433


Q ss_pred             HHHHhCCCceEEEeeccCCC------ChHHHHHHHHHHHhCCCceEEE-EEeccHHHHHHHHHCCCcEEEECcCC-CceE
Q psy3862         124 EILAALPEIEYICLDVANGY------TQTFVDFVRRIREMYPKHVIIA-GNVVTGEMVEELILSGADVIKVGIGP-GSVC  195 (671)
Q Consensus       124 ~l~~a~~~~d~Ivld~a~G~------~~~~~~~ik~lr~~~P~~~li~-g~v~t~e~a~~Li~AGaD~IvVdga~-G~~~  195 (671)
                      ++-...-+.+.+-++....+      +...++..+.+.+.   +..+. -...+.+.+++|.++|+|+|.--++. |+..
T Consensus        84 ~lare~~gt~~iKlEvi~d~~~l~pD~~~tv~aa~~L~k~---Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~  160 (268)
T 2htm_A           84 RLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEE---DFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGW  160 (268)
T ss_dssp             HHHHHHHCCSEEBCCCCSCTTTTCCCHHHHHHHHHHHHHT---TCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTCC
T ss_pred             HhhhHhcCcceeeeeeccCccccCcCHHHHHHHHHHHHHC---CCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcCCc
Confidence            32111113445444333221      23444555555442   22211 12467899999999999999653431 2210


Q ss_pred             EEEecccCCcchhhhhc-c---c-cC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcch--hhhHHH
Q psy3862         196 TTRLKNKTSDFFLIQFY-S---C-IP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQ--FSAVLE  266 (671)
Q Consensus       196 ~t~v~~~~~~~~~i~~i-~---~-~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~--~~~~~~  266 (671)
                        .+    .+.+.++.+ .   . +|  ++|||.|++.++.++++|||||-||        |.+. ....|.  ..+..+
T Consensus       161 --Gi----~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg--------SAI~-~a~dP~~ma~af~~  225 (268)
T 2htm_A          161 --GV----RTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN--------TAIA-EAQDPPAMAEAFRL  225 (268)
T ss_dssp             --CS----TTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEES--------HHHH-TSSSHHHHHHHHHH
T ss_pred             --cc----CCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC--------hHHh-CCCCHHHHHHHHHH
Confidence              01    111122222 1   2 55  6999999999999999999999999        6554 446686  666666


Q ss_pred             HHHHhh
Q psy3862         267 CADAAH  272 (671)
Q Consensus       267 ~~~~~~  272 (671)
                      +.++-+
T Consensus       226 Av~agr  231 (268)
T 2htm_A          226 AVEAGR  231 (268)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=95.55  E-value=0.03  Score=55.93  Aligned_cols=65  Identities=23%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc--ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS--CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+.++.+.++|+|.|.+-.  +.+.       ....++..+..+.  .+|  +.|++-+.+.+..++++|||+|-+|
T Consensus        32 ~~~~a~~~~~~Gad~i~v~d~~~~~~-------~~~~~~~~i~~i~~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg  102 (241)
T 1qo2_A           32 PVELVEKLIEEGFTLIHVVDLSNAIE-------NSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS  102 (241)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEHHHHHH-------CCCTTHHHHHHGGGGGGGEEEESSCCSHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEeccccccc-------CCchhHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHCCCCEEEEC
Confidence            35788999999999996521  0000       0112233333221  346  6899999999999999999999888

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=95.55  E-value=0.045  Score=54.37  Aligned_cols=66  Identities=20%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccCCcccc---ccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIPQAGNV---VTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p~aGnV---~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++++.++|++.|.+++.   ..+..+++.. +++++..+. .+| .+.+   .+.+.+..++++|||.|-++
T Consensus        39 ~~~a~~~~~~G~~~i~~~~~---~~i~~i~~~~-~~p~i~~~~~~~~-~~~~~i~~~~~~i~~~~~~Gad~V~l~  108 (234)
T 1yxy_A           39 PLMAKAAQEAGAVGIRANSV---RDIKEIQAIT-DLPIIGIIKKDYP-PQEPFITATMTEVDQLAALNIAVIAMD  108 (234)
T ss_dssp             HHHHHHHHHHTCSEEEEESH---HHHHHHHTTC-CSCEEEECBCCCT-TSCCCBSCSHHHHHHHHTTTCSEEEEE
T ss_pred             HHHHHHHHHCCCcEeecCCH---HHHHHHHHhC-CCCEEeeEcCCCC-ccccccCChHHHHHHHHHcCCCEEEEc
Confidence            35778888899999976521   0111122111 111110000 111 1112   25688999999999999776

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=95.53  E-value=0.0033  Score=65.83  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCC-ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE--
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGY-TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC--  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~-~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~--  195 (671)
                      .+.++.+..+  ++|.|  +.+.+. +..+   ++.+++.++...+++. +.+.+.+++++++|+|+|.+.+..|+..  
T Consensus        90 ide~qil~aa--GAD~I--d~s~~~~~~~l---i~~i~~~~~g~~vvv~-v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~  161 (297)
T 4adt_A           90 FVEAQILEEL--KVDML--DESEVLTMADE---YNHINKHKFKTPFVCG-CTNLGEALRRISEGASMIRTKGEAGTGNII  161 (297)
T ss_dssp             HHHHHHHHHT--TCSEE--EEETTSCCSCS---SCCCCGGGCSSCEEEE-ESSHHHHHHHHHHTCSEEEECCCTTSCCCH
T ss_pred             HHHHHHHHHc--CCCEE--EcCCCCCHHHH---HHHHHhcCCCCeEEEE-eCCHHHHHHHHhCCCCEEEECCCcCCCchH
Confidence            4555555566  78887  544431 2222   2333333444555664 6788888889999999999987545320  


Q ss_pred             --EEE-------e---------------cccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 --TTR-------L---------------KNKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 --~t~-------v---------------~~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                        +.+       +               .+..+++.++..+.   .+|    +.|||.|.+.+..++++|||||-||
T Consensus       162 ~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVG  238 (297)
T 4adt_A          162 EAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVG  238 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEES
T ss_pred             HHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEh
Confidence              000       0               01123455555443   245    3899999999999999999999999

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=95.48  E-value=0.063  Score=55.90  Aligned_cols=72  Identities=21%  Similarity=0.203  Sum_probs=40.7

Q ss_pred             CCCceEEEEEeccHHHHHHHHHCCCcEE-EEC-----c--CCCceEEEEecccCCcchhhhhcc---ccCCcccccc--H
Q psy3862         158 YPKHVIIAGNVVTGEMVEELILSGADVI-KVG-----I--GPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVT--G  224 (671)
Q Consensus       158 ~P~~~li~g~v~t~e~a~~Li~AGaD~I-vVd-----g--a~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t--~  224 (671)
                      .+.+.++  +....+.++.+.++|+|+| +++     .  ..|..       ...+...+..+.   .+|+-+++-.  .
T Consensus        20 ~~~g~i~--~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~-------~~~~~~~i~~I~~~~~iPv~~k~r~g~~   90 (305)
T 2nv1_A           20 QKGGVIM--DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVA-------RMADPTIVEEVMNAVSIPVMAKARIGHI   90 (305)
T ss_dssp             TTTCEEE--EESSHHHHHHHHHTTCSEEEECCC-------CCCCC-------CCCCHHHHHHHHHHCSSCEEEEECTTCH
T ss_pred             ccCCeee--cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcc-------cCCCHHHHHHHHHhCCCCEEecccccch
Confidence            4444333  5567799999999999999 664     1  11110       011222222221   3564444433  5


Q ss_pred             HHHHHHHHcCCCEE
Q psy3862         225 EMVEELILSGADVI  238 (671)
Q Consensus       225 ~~a~~li~aGAdgv  238 (671)
                      +.+..+.++|||+|
T Consensus        91 ~~~~~~~a~GAd~V  104 (305)
T 2nv1_A           91 VEARVLEAMGVDYI  104 (305)
T ss_dssp             HHHHHHHHHTCSEE
T ss_pred             HHHHHHHHCCCCEE
Confidence            66677777888888

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=95.26  E-value=0.034  Score=73.80  Aligned_cols=134  Identities=20%  Similarity=0.231  Sum_probs=72.9

Q ss_pred             ccccHHHHHHHHHcCCCEEEEcccCCCcccc---ceecccCcchhhh--HHHHHHHhhhcCCcchhhhhhccceeecccc
Q psy3862         220 NVVTGEMVEELILSGADVIKVGIGPGSVCTT---RLKTGVGYPQFSA--VLECADAAHGLGGHIISFLTAMAQKIINDIK  294 (671)
Q Consensus       220 nV~t~~~a~~li~aGAdgvkVG~~~~~~~~T---r~V~gv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  294 (671)
                      -|-=.+....+.+.|++-+ |=+|||.++|.   |..-|.|..-+++  .-+-.+           +++.. ..  ....
T Consensus       333 PV~W~~~v~~l~~~Gv~~f-iEiGPG~vL~~L~k~i~~g~gv~~v~~~t~~~~~~-----------l~~~~-~~--~~~~  397 (3089)
T 3zen_D          333 QVDWVDEITELHEAGARWI-LDLGPGDILTRLTAPVIRGLGIGIVPAATRGGQRN-----------LFTVG-AV--PEVA  397 (3089)
T ss_dssp             CBCCHHHHHHHHTTTCCEE-EECSSSSCSHHHHHHHHGGGSCEEEETTCHHHHHH-----------HTCSS-SC--CCCC
T ss_pred             cEeHHHHHHHHHHCCCCEE-EEECCchHHHHHHHHHcCCCCceEEecCChhhHHH-----------HhCCC-CC--CCCC
Confidence            3444566778888999866 88999998852   3333333322211  111111           01110 00  0122


Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC-CCCHHHHHHHHHcCCeEEE-ccC-CCHHHHH
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT-VGTFEMAKHLAKHGLFTTI-HKY-YTLEEWK  371 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt-V~~~~mA~~la~~Gglgvi-hr~-~~~e~~~  371 (671)
                      -++++  ..|+-..... ..+-+.++|+-    .+- ..|||.++|-. +.+++||.+.++.||||+| --. .++|...
T Consensus       398 ~~W~~--f~P~l~~~~~-g~~~~~t~~~~----~lg-~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~  469 (3089)
T 3zen_D          398 RPWSS--YAPTVVKLPD-GSVKLETKFTR----LTG-RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFN  469 (3089)
T ss_dssp             CCGGG--GCCEEEECTT-CCEEEECHHHH----HHS-SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHH
T ss_pred             CCccc--cCCcccccCC-Ccccccchhhh----hcC-CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHH
Confidence            33332  2232211111 22234444431    111 68999999995 4599999999999999999 333 4777766


Q ss_pred             HHHhc
Q psy3862         372 AFAVQ  376 (671)
Q Consensus       372 ~~v~~  376 (671)
                      +++++
T Consensus       470 ~~i~~  474 (3089)
T 3zen_D          470 DRIAE  474 (3089)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=95.17  E-value=0.013  Score=60.41  Aligned_cols=128  Identities=23%  Similarity=0.186  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCC-ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce-E-
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGY-TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV-C-  195 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~-~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~-~-  195 (671)
                      +..++.+..+  ++|+|  |..... +.   +.+..+.+..+..+.+|+. .+.+.|.+.++.|+|.|..-+..|+. . 
T Consensus        80 ~~EAqilea~--GaD~I--Desevltpa---d~~~~I~k~~f~vpfv~~~-~~l~EAlrri~eGA~mIrTtge~gtg~v~  151 (291)
T 3o07_A           80 FVEAQIIEAL--EVDYI--DESEVLTPA---DWTHHIEKDKFKVPFVCGA-KDLGEALRRINEGAAMIRTKGEAGTGDVS  151 (291)
T ss_dssp             HHHHHHHHHT--TCSEE--EEETTSCCS---CSSCCCCGGGCSSCEEEEE-SSHHHHHHHHHHTCSEEEECCCTTSCCTH
T ss_pred             HHHHHHHHHc--CCCEE--ecccCCCHH---HHHHHhhhhcCCCcEEeeC-CCHHHHHHHHHCCCCEEEecCcCCCccHH
Confidence            4555556555  77877  655322 11   1112222222344566655 67788888899999999988766653 0 


Q ss_pred             --EE----------E---e----------cccCCcchhhhhcc---ccCC----ccccccHHHHHHHHHcCCCEEEEccc
Q psy3862         196 --TT----------R---L----------KNKTSDFFLIQFYS---CIPQ----AGNVVTGEMVEELILSGADVIKVGIG  243 (671)
Q Consensus       196 --~t----------~---v----------~~~~~~~~~i~~i~---~~p~----aGnV~t~~~a~~li~aGAdgvkVG~~  243 (671)
                        .+          .   +          ++..+++.++..++   .+|+    .|||.|.+.++.++++|||||-||  
T Consensus       152 ~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG--  229 (291)
T 3o07_A          152 EAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVG--  229 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC--
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc--
Confidence              00          0   1          01124555555553   3573    599999999999999999999999  


Q ss_pred             CCCccccceecccCcchhhh
Q psy3862         244 PGSVCTTRLKTGVGYPQFSA  263 (671)
Q Consensus       244 ~~~~~~Tr~V~gv~~~~~~~  263 (671)
                             |-++....|+..+
T Consensus       230 -------rAI~~s~DP~~~A  242 (291)
T 3o07_A          230 -------SGIFKSSNPVRLA  242 (291)
T ss_dssp             -------GGGGGSSCHHHHH
T ss_pred             -------hHHhCCCCHHHHH
Confidence                   3355556676543

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=95.09  E-value=0.1  Score=51.93  Aligned_cols=71  Identities=21%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             hhHHHHHHc--CCcEEEEccccccccccccccccccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEE
Q psy3862         393 GDVAKAMGA--GADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       393 ~~~~~l~~a--G~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      +.+..+.+.  ++|++.++.+..|.+.....     ......+..+++..++   .++|| +...++.+++.+|||++.|
T Consensus       127 e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~-----~~~l~~i~~~~~~~~~~pi~v~GG-I~~~ni~~~~~aGaD~vvv  200 (228)
T 1h1y_A          127 EEVFPLVEAENPVELVLVMTVEPGFGGQKFM-----PEMMEKVRALRKKYPSLDIEVDGG-LGPSTIDVAASAGANCIVA  200 (228)
T ss_dssp             GGGHHHHHSSSCCSEEEEESSCTTCSSCCCC-----GGGHHHHHHHHHHCTTSEEEEESS-CSTTTHHHHHHHTCCEEEE
T ss_pred             HHHHHHHhcCCCCCEEEEEeecCCCCcccCC-----HHHHHHHHHHHHhcCCCCEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence            555666666  99999998444344322111     1111122333443322   45677 5777777888999999999


Q ss_pred             Cc
Q psy3862         468 GG  469 (671)
Q Consensus       468 G~  469 (671)
                      |.
T Consensus       201 Gs  202 (228)
T 1h1y_A          201 GS  202 (228)
T ss_dssp             SH
T ss_pred             CH
Confidence            85

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=95.02  E-value=4.3  Score=44.65  Aligned_cols=281  Identities=13%  Similarity=0.052  Sum_probs=142.4

Q ss_pred             HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEec
Q psy3862         121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  200 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~  200 (671)
                      .+.+...+  ++|+|.++.+-=....+.++++..++.   +..+-.-+.|.+.+++++++|+|+|-+.-       +-++
T Consensus       122 Qi~ea~~~--GAD~ILLi~a~l~~~~l~~l~~~a~~l---gm~~LvEvh~~eE~~~A~~lga~iIGinn-------r~L~  189 (452)
T 1pii_A          122 QIYLARYY--QADACLLMLSVLDDDQYRQLAAVAHSL---EMGVLTEVSNEEEQERAIALGAKVVGINN-------RDLR  189 (452)
T ss_dssp             HHHHHHHT--TCSEEEEETTTCCHHHHHHHHHHHHHT---TCEEEEEECSHHHHHHHHHTTCSEEEEES-------EETT
T ss_pred             HHHHHHHc--CCCEEEEEcccCCHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHCCCCEEEEeC-------CCCC
Confidence            34445555  889988886631123444455444442   23333357889999999999999993311       0111


Q ss_pred             ccCCc----chhhhhcc-ccC--CccccccHHHHHHHHHcCCCEEEEccc---CCCc---ccc-----ceecccCcchhh
Q psy3862         201 NKTSD----FFLIQFYS-CIP--QAGNVVTGEMVEELILSGADVIKVGIG---PGSV---CTT-----RLKTGVGYPQFS  262 (671)
Q Consensus       201 ~~~~~----~~~i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~---~~~~---~~T-----r~V~gv~~~~~~  262 (671)
                      ...++    ..+++.+. .++  .-|||-|.+.++.+.++ |||+-||=.   +..+   +..     -.+||+-+|+  
T Consensus       190 t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l~~~~~KICGit~~e--  266 (452)
T 1pii_A          190 DLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQ--  266 (452)
T ss_dssp             TTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHHHCSCEECCCCSHH--
T ss_pred             CCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHHHhccccCCCcHH--
Confidence            11112    12222221 122  69999999999999999 999999932   1110   000     0255665553  


Q ss_pred             hHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccce--eeeeeccCCceeeCcceEecCC
Q psy3862         263 AVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDIT--RTFTFRNSGKTYQGVPIIAANM  340 (671)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~--~~l~~~~s~~~~~~iPiIaa~M  340 (671)
                          -+.+|.++|+.-+.|.                   +.|+     ||..|+..  +++.-.      ..+..+.==.
T Consensus       267 ----da~~a~~~Gad~iGfI-------------------f~~~-----SpR~V~~~~a~~i~~~------~~v~~VgVFv  312 (452)
T 1pii_A          267 ----DAKAAYDAGAIYGGLI-------------------FVAT-----SPRCVNVEQAQEVMAA------APLQYVGVFR  312 (452)
T ss_dssp             ----HHHHHHHHTCSEEEEE-------------------CCTT-----CTTBCCHHHHHHHHHH------CCCEEEEEES
T ss_pred             ----HHHHHHhcCCCEEEee-------------------cCCC-----CCCCCCHHHHHHHHhc------CCCCEEEEEe
Confidence                2233334454444421                   1221     22333332  222100      0122222111


Q ss_pred             CCCCCHHHHHHHHHcCCeEEE--ccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHc-CCcEEEEccccccccc
Q psy3862         341 DTVGTFEMAKHLAKHGLFTTI--HKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGA-GADFVMLGGMFAGHDQ  417 (671)
Q Consensus       341 DtV~~~~mA~~la~~Gglgvi--hr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~a-G~d~i~id~~a~gh~~  417 (671)
                      |  -+.+....+.+..++.++  |..+++|.....-...|.-++.+.+.....+  +.. ... .+|++.+| +..|-+-
T Consensus       313 n--~~~~~i~~~~~~~~ld~vQLHG~E~~~~~~~l~~~~p~~~~iika~~v~~~--~~~-~~~~~~d~~LlD-~~~GGtG  386 (452)
T 1pii_A          313 N--HDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGET--LPA-REFQHVDKYVLD-NGQGGSG  386 (452)
T ss_dssp             S--CCHHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSS--CCC-CCCTTCCEEEEE-SCSCCSS
T ss_pred             C--CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCcEEEEEecCCc--cch-hhhhcccEEEec-CCCCCCC
Confidence            1  145566666666566554  6677777665432223322344444333221  111 011 58999999 4434333


Q ss_pred             cccccccccccccccccccccccC-c-eeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         418 SGGELTNIEYMFFPLVGDMNSYLG-G-VVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                      ...++-           .++++.+ + ++.|| +.+.|+++++..+..+|=|-
T Consensus       387 ~~fdW~-----------~l~~~~~~p~iLAGG-L~p~NV~~ai~~~p~gvDvs  427 (452)
T 1pii_A          387 QRFDWS-----------LLNGQSLGNVLLAGG-LGADNCVEAAQTGCAGLDFN  427 (452)
T ss_dssp             CCCCGG-----------GGTTSCCTTEEEESS-CCTTTHHHHHTTCCSEEEEC
T ss_pred             CccCHH-----------HhhcccCCcEEEEcC-CCHHHHHHHHhcCCCEEEeC
Confidence            333431           1122211 2 44566 79999999887888877665

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=94.90  E-value=0.077  Score=54.30  Aligned_cols=132  Identities=15%  Similarity=0.134  Sum_probs=71.7

Q ss_pred             CcceEe----cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHH---HHHHHhcCcccccceeeec-ccChhhHHHHHHcCC
Q psy3862         332 GVPIIA----ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEE---WKAFAVQNPDVIKHVADGG-CTSPGDVAKAMGAGA  403 (671)
Q Consensus       332 ~iPiIa----a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~---~~~~v~~~~~~~~~v~~~~-~~~~~~~~~l~~aG~  403 (671)
                      ++|++-    .++...+..+++..+.+.|.=|++---.++|+   +.+.++++-  ++.+.... .++++++..+.+.+.
T Consensus        94 ~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g--~~~i~l~~p~t~~~~i~~i~~~~~  171 (268)
T 1qop_A           94 TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHN--IAPIFICPPNADDDLLRQVASYGR  171 (268)
T ss_dssp             SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTT--CEEECEECTTCCHHHHHHHHHHCC
T ss_pred             CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHHHhhCC
Confidence            467644    22444555789999999998877765666554   444444321  11111111 234567777777666


Q ss_pred             cEEEEccccccccccccccccccccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         404 DFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       404 d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      +++.+. +..|.+-..-..   .......+..+|+... .+.+||-+.+.+.+. ++.+|||+|.||.
T Consensus       172 g~v~~~-s~~G~tG~~~~~---~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS  235 (268)
T 1qop_A          172 GYTYLL-SRSGVTGAENRG---ALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS  235 (268)
T ss_dssp             SCEEEE-SSSSCCCSSSCC-----CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CcEEEE-ecCCcCCCccCC---CchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence            676665 434543221100   0011112333444432 244455567677666 5999999999995

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=94.89  E-value=0.55  Score=46.01  Aligned_cols=106  Identities=15%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHh-CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEE
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREM-YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT  196 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~-~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~  196 (671)
                      +++.+..++..  +++.+.++..........+.++.+++. .|...++. +    +..+.+.++|+|.|-+....-  ..
T Consensus        31 ~l~~~~~~~~~--G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v-~----~~~~~a~~~gad~v~l~~~~~--~~  101 (221)
T 1yad_A           31 ELARIIITIQN--EVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVM-N----GRVDIALFSTIHRVQLPSGSF--SP  101 (221)
T ss_dssp             HHHHHHHHHGG--GCSEEEECCTTSCHHHHHHHHHHHHHTTCCGGGEEE-E----SCHHHHHTTTCCEEEECTTSC--CH
T ss_pred             hHHHHHHHHHC--CCCEEEEccCCCCHHHHHHHHHHHHHhcCcCCeEEE-e----ChHHHHHHcCCCEEEeCCCcc--CH
Confidence            34455566665  778888875543345566777777653 23222332 2    456778899999997743211  00


Q ss_pred             EEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         197 TRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       197 t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+++..+         ...++-.+-|.+.++.+.++|||.|-+|
T Consensus       102 ~~~~~~~~---------~~~ig~sv~t~~~~~~a~~~gaD~i~~~  137 (221)
T 1yad_A          102 KQIRARFP---------HLHIGRSVHSLEEAVQAEKEDADYVLFG  137 (221)
T ss_dssp             HHHHHHCT---------TCEEEEEECSHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHCC---------CCEEEEEcCCHHHHHHHHhCCCCEEEEC
Confidence            11111111         1113445668888888889999988664

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=94.87  E-value=0.28  Score=50.63  Aligned_cols=27  Identities=15%  Similarity=0.164  Sum_probs=22.4

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .+++-+..+.--|+.+.++|+|+|-+.
T Consensus        18 ~i~~~tayDa~sA~l~e~aG~d~ilvG   44 (275)
T 1o66_A           18 KIAMLTAYESSFAALMDDAGVEMLLVG   44 (275)
T ss_dssp             CEEEEECCSHHHHHHHHHTTCCEEEEC
T ss_pred             cEEEEeCcCHHHHHHHHHcCCCEEEEC
Confidence            355667788899999999999999874

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=94.81  E-value=0.016  Score=57.95  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             HHHHHHHHhCCCceEEE--eeccC---CCChHHHHHHHHHHHhC-CCceEE---EEEec---cHHHHHHHHHCCCcEEEE
Q psy3862         120 AGLKEILAALPEIEYIC--LDVAN---GYTQTFVDFVRRIREMY-PKHVII---AGNVV---TGEMVEELILSGADVIKV  187 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Iv--ld~a~---G~~~~~~~~ik~lr~~~-P~~~li---~g~v~---t~e~a~~Li~AGaD~IvV  187 (671)
                      ..++..++.  +.+.+-  ++...   +....+.+.++.+++.. |...++   .+...   ..+.++.+.++|+|+|..
T Consensus        74 ~~~~~A~~~--Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t  151 (225)
T 1mzh_A           74 KEAVEAVRD--GAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT  151 (225)
T ss_dssp             HHHHHHHHT--TCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             HHHHHHHHc--CCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence            344555665  555543  44332   23344555567666654 554455   22211   135578889999999976


Q ss_pred             CcCC--CceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEccc
Q psy3862         188 GIGP--GSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIG  243 (671)
Q Consensus       188 dga~--G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~  243 (671)
                      ..+.  |..          +...+..++     .+|  ++|||-|.+.+.+++++|||  +||++
T Consensus       152 stg~~~gga----------~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~--~iG~s  204 (225)
T 1mzh_A          152 STGFAPRGT----------TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGAD--RIGTS  204 (225)
T ss_dssp             CCSCSSSCC----------CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS--EEEES
T ss_pred             CCCCCCCCC----------CHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCch--HHHHc
Confidence            5421  111          111111111     245  79999999999999999999  56643

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=94.78  E-value=0.042  Score=56.58  Aligned_cols=122  Identities=14%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcc-cccceeeecc-cChhhHHHHHHcCCcEEEEccccccccccccc
Q psy3862         344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHVADGGC-TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  421 (671)
Q Consensus       344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~-~~~~v~~~~~-~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~  421 (671)
                      +..+++..+++.|.=|+|=--.++||..+++...++ -+..+....- ++++++.++.+.+-+|+..- +..|..-..-.
T Consensus       111 g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~v-S~~GvTG~~~~  189 (267)
T 3vnd_A          111 GIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLL-SRAGVTGTESK  189 (267)
T ss_dssp             CHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEES-CCCCCC-----
T ss_pred             hHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEE-ecCCCCCCccC
Confidence            447799999999999977767777664444432211 1222322232 34577888888877788875 34433211100


Q ss_pred             cccccccccccccccccccC-ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         422 LTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      .   .......+..+|++.. .+++|+-+.+.+.++ .+.+|||+|.||.
T Consensus       190 ~---~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS  236 (267)
T 3vnd_A          190 A---GEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS  236 (267)
T ss_dssp             ------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             C---cHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence            0   0111123444555543 255566677788877 8999999999984

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=94.75  E-value=0.066  Score=54.68  Aligned_cols=122  Identities=19%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcc-cccceeeecc-cChhhHHHHHHcCCcEEEEccccccccccccc
Q psy3862         344 GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHVADGGC-TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  421 (671)
Q Consensus       344 ~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~-~~~~v~~~~~-~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~  421 (671)
                      +..+++..+++.|.=|+|=-..++||..++....++ -+..+.-..- ++++++.++.+.+-+|+... +..|..-....
T Consensus       104 G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~V-s~~GvTG~~~~  182 (252)
T 3tha_A          104 GLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLL-ASIGITGTKSV  182 (252)
T ss_dssp             CHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEE-CCSCSSSCSHH
T ss_pred             hHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEE-ecCCCCCcccC
Confidence            456799999999999999988888885555433221 1333332333 34677888877777777665 32332211101


Q ss_pred             cccccccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         422 LTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .   .......++.+|++.. .++.|+-+.+.+.++.+..+||+|.||.
T Consensus       183 ~---~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~~ADGVIVGS  228 (252)
T 3tha_A          183 E---EAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVADGVIVGT  228 (252)
T ss_dssp             H---HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTTTSSEEEECH
T ss_pred             C---CHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHhcCCEEEECH
Confidence            0   0111223445555543 2556666788998887777899999994

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=94.62  E-value=0.23  Score=51.78  Aligned_cols=82  Identities=12%  Similarity=-0.004  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECcCCCce---EEEEecccCCcchhhhhccccCCcccccc
Q psy3862         148 VDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGIGPGSV---CTTRLKNKTSDFFLIQFYSCIPQAGNVVT  223 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdga~G~~---~~t~v~~~~~~~~~i~~i~~~p~aGnV~t  223 (671)
                      .+.++++++.. ..++++. .+...+.++.|.++|||+|  |.+.+..   .+.++++...         ..++--.+-|
T Consensus        67 ~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD~I--d~s~~~~~~~li~~i~~~~~---------g~~vvv~v~~  134 (297)
T 4adt_A           67 PLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVDML--DESEVLTMADEYNHINKHKF---------KTPFVCGCTN  134 (297)
T ss_dssp             HHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCSEE--EEETTSCCSCSSCCCCGGGC---------SSCEEEEESS
T ss_pred             HHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCCEE--EcCCCCCHHHHHHHHHhcCC---------CCeEEEEeCC
Confidence            45555555443 2345544 4455789999999999999  4444311   0111111111         1233335889


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.++++|||.|.+.
T Consensus       135 ~~Ea~~a~~~Gad~I~v~  152 (297)
T 4adt_A          135 LGEALRRISEGASMIRTK  152 (297)
T ss_dssp             HHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHhCCCCEEEEC
Confidence            999999999999988665

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=94.59  E-value=0.11  Score=53.74  Aligned_cols=63  Identities=17%  Similarity=0.084  Sum_probs=40.5

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+...++||++|-+-.-++.-        ..++.-+..+.   .+|  .-+.+.|..++..+.++|||+|-++
T Consensus        82 ~~~A~~y~~~GA~~IsVltd~~~f--------~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi  149 (272)
T 3tsm_A           82 PALAKAYEEGGAACLSVLTDTPSF--------QGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILII  149 (272)
T ss_dssp             HHHHHHHHHTTCSEEEEECCSTTT--------CCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEecccccc--------CCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEc
Confidence            478889999999999663211100        01111112221   345  2456788889999999999999998

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=94.57  E-value=0.24  Score=51.06  Aligned_cols=76  Identities=18%  Similarity=0.149  Sum_probs=44.6

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEECc-----CCCce---EEE---------EecccCCcchhhhhccccCCccccccH
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVGI-----GPGSV---CTT---------RLKNKTSDFFLIQFYSCIPQAGNVVTG  224 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVdg-----a~G~~---~~t---------~v~~~~~~~~~i~~i~~~p~aGnV~t~  224 (671)
                      .++.-+..+.--|+.+.++|+|+|-+..     ..|+.   .++         .+.+-.++.+   .+.++|- |+-.+.
T Consensus        30 ~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~---vvaD~pf-gsY~s~  105 (275)
T 3vav_A           30 KIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRAL---IVADLPF-GTYGTP  105 (275)
T ss_dssp             CEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSE---EEEECCT-TSCSSH
T ss_pred             cEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCC---EEEecCC-CCCCCH
Confidence            3556677888999999999999997753     33432   011         1111111111   1223453 322444


Q ss_pred             HH----HHHHHHcCCCEEEEc
Q psy3862         225 EM----VEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~----a~~li~aGAdgvkVG  241 (671)
                      ++    +..++++||++||+=
T Consensus       106 ~~a~~~a~rl~kaGa~aVklE  126 (275)
T 3vav_A          106 ADAFASAVKLMRAGAQMVKFE  126 (275)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEC
Confidence            44    567889999999975

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=94.45  E-value=0.08  Score=52.12  Aligned_cols=100  Identities=24%  Similarity=0.270  Sum_probs=61.2

Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhh
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQ  210 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~  210 (671)
                      +++.+++.....    ..   +.+++.+| ..+++..+.+.+.++.+.++|+|+|.++.--++..-...  ....+..+.
T Consensus        88 gad~v~l~~~~~----~~---~~~~~~~~-~~~ig~sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~--~~~~~~~l~  157 (221)
T 1yad_A           88 TIHRVQLPSGSF----SP---KQIRARFP-HLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGL--EGRGVSLLS  157 (221)
T ss_dssp             TCCEEEECTTSC----CH---HHHHHHCT-TCEEEEEECSHHHHHHHHHTTCSEEEEECCC------------CHHHHHH
T ss_pred             CCCEEEeCCCcc----CH---HHHHHHCC-CCEEEEEcCCHHHHHHHHhCCCCEEEECCccccCCCCCC--CCCCHHHHH
Confidence            778887753211    12   33333455 445566778899999999999999988542111100000  001122222


Q ss_pred             hcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         211 FYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       211 ~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.   .+|  ++||| |.+.+..++++|||+|-||
T Consensus       158 ~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vg  192 (221)
T 1yad_A          158 DIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAVM  192 (221)
T ss_dssp             HHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEES
T ss_pred             HHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEEh
Confidence            221   356  79999 9999999999999999888

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=94.44  E-value=0.099  Score=52.12  Aligned_cols=121  Identities=20%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEec--------------c-H
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVV--------------T-G  171 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~--------------t-~  171 (671)
                      |+.+.-++.  +.+++..++.+  +++.+++....   ..-.+.+.++.+.++....++-...              + .
T Consensus        77 pv~v~ggI~--~~~~~~~~l~~--Gad~V~lg~~~---l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~  149 (244)
T 1vzw_A           77 KVELSGGIR--DDDTLAAALAT--GCTRVNLGTAA---LETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLY  149 (244)
T ss_dssp             EEEEESSCC--SHHHHHHHHHT--TCSEEEECHHH---HHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHH
T ss_pred             cEEEECCcC--CHHHHHHHHHc--CCCEEEECchH---hhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHH
Confidence            455444443  44567777777  78888875321   1111233333333332222322322              3 4


Q ss_pred             HHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc---CCCEEEEc
Q psy3862         172 EMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS---GADVIKVG  241 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a---GAdgvkVG  241 (671)
                      +.++.+.++|+|.|.+-+  ..|+.       ..+++..++-+.   .+|  +.|||.+.+.+..++++   ||||+-||
T Consensus       150 e~~~~~~~~G~~~i~~~~~~~~~~~-------~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG  222 (244)
T 1vzw_A          150 ETLDRLNKEGCARYVVTDIAKDGTL-------QGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVG  222 (244)
T ss_dssp             HHHHHHHHTTCCCEEEEEC--------------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred             HHHHHHHhCCCCEEEEeccCccccc-------CCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeee
Confidence            667899999999876533  11110       012333333332   356  78999999999999999   99999999

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=94.23  E-value=0.3  Score=51.96  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=36.2

Q ss_pred             HHHHcCCcEEEEccccc--cccccccccccccccccccccccccccC--ceeeccccCchhHHH-HHHcCCcEEEECc
Q psy3862         397 KAMGAGADFVMLGGMFA--GHDQSGGELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAK-AMGAGADFVMLGG  469 (671)
Q Consensus       397 ~l~~aG~d~i~id~~a~--gh~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~-~l~aGAd~V~vG~  469 (671)
                      .+.++|+|+|.+.+...  |++......  .....++.+..+++..+  .++..|-+.+.+-++ ++. |||+|++|.
T Consensus       152 ~l~~aG~d~I~V~~r~~~~g~~g~~~~~--~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGR  226 (350)
T 3b0p_A          152 AMAEAGVKVFVVHARSALLALSTKANRE--IPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGR  226 (350)
T ss_dssp             HHHHTTCCEEEEECSCBC------------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECH
T ss_pred             HHHHcCCCEEEEecCchhcccCcccccC--CCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECH
Confidence            34678999999875332  343210000  00011223333444432  255556577777766 455 999999995

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=94.18  E-value=0.092  Score=54.18  Aligned_cols=109  Identities=12%  Similarity=-0.020  Sum_probs=66.3

Q ss_pred             HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEec
Q psy3862         121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLK  200 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~  200 (671)
                      .+.+....  ++|.|.+..+--....+.++++..++ +  +..+..-+.+.+.+++++++|+|+|-+.....       +
T Consensus       134 qi~ea~~~--GAD~VlLi~a~L~~~~l~~l~~~a~~-l--Gl~~lvevh~~eEl~~A~~~ga~iIGinnr~l-------~  201 (272)
T 3tsm_A          134 QVYEARSW--GADCILIIMASVDDDLAKELEDTAFA-L--GMDALIEVHDEAEMERALKLSSRLLGVNNRNL-------R  201 (272)
T ss_dssp             HHHHHHHT--TCSEEEEETTTSCHHHHHHHHHHHHH-T--TCEEEEEECSHHHHHHHTTSCCSEEEEECBCT-------T
T ss_pred             HHHHHHHc--CCCEEEEcccccCHHHHHHHHHHHHH-c--CCeEEEEeCCHHHHHHHHhcCCCEEEECCCCC-------c
Confidence            44445555  88998887552212233344443333 2  22222346788999999999999994422211       1


Q ss_pred             ccCCc----chhhhhcc-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         201 NKTSD----FFLIQFYS-CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       201 ~~~~~----~~~i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...++    ..+++.+. .+|  +.|||-|.+.++.+.++|||||-||
T Consensus       202 t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG  249 (272)
T 3tsm_A          202 SFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIG  249 (272)
T ss_dssp             TCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEEC
T ss_pred             cCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            11112    12222221 233  6999999999999999999999999

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=94.08  E-value=0.011  Score=73.15  Aligned_cols=294  Identities=13%  Similarity=0.101  Sum_probs=159.5

Q ss_pred             eccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCC-CCCH----HHHHHHHHcCCeEEEcc-
Q psy3862         290 INDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDT-VGTF----EMAKHLAKHGLFTTIHK-  363 (671)
Q Consensus       290 ~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDt-V~~~----~mA~~la~~Gglgvihr-  363 (671)
                      ++..-.+|+|++..+.-..-.+.+|||+..++          ..||+-++|-. ..+.    .+|+++++.|+++.+=- 
T Consensus       818 ~~~~~~~~~dl~~~~~~l~~i~~~ev~~~~~I----------~~Pf~isaMS~GalS~ea~~aLA~Aa~~aGg~~~tGeG  887 (1479)
T 1ea0_A          818 NKRPPMQLRDLLELRSTKAPVPVDEVESITAI----------RKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEG  887 (1479)
T ss_dssp             HTSCCCSGGGGEEECCSSCCCCGGGSCCHHHH----------HTTEEEEECCBTTBCHHHHHHHHHHHHHTTCEEECCTT
T ss_pred             ccCCCCchhhhhhccCCCCCCCcccccccccc----------cCCeEecCccccccCHHHHHHHHHHHHHcCCeeEcCCC
Confidence            44556789999998753333445778877655          48999999984 3344    89999999999988853 


Q ss_pred             CCCHHHHH---------HHHhcC-cc-------ccc-----ceeee-------ccc-C----hhhHHHH--HHcCCcEEE
Q psy3862         364 YYTLEEWK---------AFAVQN-PD-------VIK-----HVADG-------GCT-S----PGDVAKA--MGAGADFVM  407 (671)
Q Consensus       364 ~~~~e~~~---------~~v~~~-~~-------~~~-----~v~~~-------~~~-~----~~~~~~l--~~aG~d~i~  407 (671)
                      .+++|+..         ..+++. +.       ++.     ++..+       |+. .    .++++++  +..|++++.
T Consensus       888 g~~pe~~~~~~~g~~~~~~IrQ~asg~FGVn~~~l~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lis  967 (1479)
T 1ea0_A          888 GEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLIS  967 (1479)
T ss_dssp             CCCGGGSSBCTTSCBCCCSEEEECSSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEEC
T ss_pred             ccCHHHhhhccccchhhhhhhhhcCCCCCcChHHccccchHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccC
Confidence            34555431         122221 10       000     11111       111 1    1334444  345788775


Q ss_pred             Eccccccc-cccccccccccccccccccccccccCc--e---eeccccCchhHHH-HHHcCCcEEEECccccCCccCCCc
Q psy3862         408 LGGMFAGH-DQSGGELTNIEYMFFPLVGDMNSYLGG--V---VDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGE  480 (671)
Q Consensus       408 id~~a~gh-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~  480 (671)
                      -    .+| ..+..+      .....+.++|+..+.  +   ++++ ....+.|+ +.++|||+|.|...++|+...+-.
T Consensus       968 P----~~~~d~~s~e------dl~~~I~~Lk~~~~~~PV~VKlv~~-~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~ 1036 (1479)
T 1ea0_A          968 P----PPHHDIYSIE------DLAQLIYDLKQINPDAKVTVKLVSR-SGIGTIAAGVAKANADIILISGNSGGTGASPQT 1036 (1479)
T ss_dssp             C----SSCTTCSSHH------HHHHHHHHHHHHCTTCEEEEEEECC-TTHHHHHHHHHHTTCSEEEEECTTCCCSSEETT
T ss_pred             C----CCCcCcCCHH------HHHHHHHHHHHhCCCCCEEEEEcCC-CChHHHHHHHHHcCCcEEEEcCCCCCCCCCchh
Confidence            3    233 222111      001123333443321  1   1121 22355565 569999999994335553221111


Q ss_pred             EEEeCCeEEEEeeCcccHHHHHhhccccccc-------cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         481 LIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       481 ~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y-------~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      .        ....|.|...++.++.....++       ..++|+   |++..|++||++     |++|..+--+.+|.  
T Consensus      1037 ~--------~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGG---IrtG~DVakALaLGAdaV~iGTafL~a~gc~-- 1103 (1479)
T 1ea0_A         1037 S--------IKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGG---LKTGRDIVIAAMLGAEEFGIGTASLIAMGCI-- 1103 (1479)
T ss_dssp             H--------HHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESS---CCSHHHHHHHHHTTCSEEECCHHHHHHHTCC--
T ss_pred             h--------hcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECC---CCCHHHHHHHHHcCCCeeeEcHHHHHHHHHH--
Confidence            0        1246788887776654332211       123332   789999999999     77777763322111  


Q ss_pred             cccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHH
Q psy3862         549 KLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVND  628 (671)
Q Consensus       549 ~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~  628 (671)
                      ....++.                           .+.-+|-...+..            ...+.+.|       ...+.+
T Consensus      1104 ~~r~Ch~---------------------------~~CP~Gvatqdp~------------l~~~~~gg-------~e~V~n 1137 (1479)
T 1ea0_A         1104 MVRQCHS---------------------------NTCPVGVCVQDDK------------LRQKFVGT-------PEKVVN 1137 (1479)
T ss_dssp             CCCCTTT---------------------------TCCTTSSSCCCTT------------GGGSCCCC-------HHHHHH
T ss_pred             HHhhccC---------------------------CCCCceeEEeCHH------------HHhhcCCc-------hHHHHH
Confidence            0000000                           0011222221000            00112222       335888


Q ss_pred             HHHHHHHHHhhhccccCcccccccccccEEEEecc
Q psy3862         629 TVQDILGGLRSACTYVGASKLKELPRRATFIRCTA  663 (671)
Q Consensus       629 ~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~  663 (671)
                      ++..+..+||..|..+|.++++||+.++.+++++.
T Consensus      1138 ~l~~l~~ELr~~Ma~lG~~si~eL~g~~~ll~~~~ 1172 (1479)
T 1ea0_A         1138 LFTFLAEEVREILAGLGFRSLNEVIGRTDLLHQVS 1172 (1479)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCSGGGTTCGGGEEEC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHhCchheeeccc
Confidence            89999999999999999999999999999998886

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=94.01  E-value=0.072  Score=53.33  Aligned_cols=176  Identities=19%  Similarity=0.195  Sum_probs=90.8

Q ss_pred             Cccccc-cHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccC
Q psy3862         217 QAGNVV-TGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKL  295 (671)
Q Consensus       217 ~aGnV~-t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l  295 (671)
                      .++... ..+.++.+.++|||-+.+++          .-|--+|.++--.+.++..+++                     
T Consensus        12 la~D~~~l~~~i~~~~~~Gad~ihldi----------~DG~fvp~~~~g~~~v~~lr~~---------------------   60 (230)
T 1tqj_A           12 LSADFSRLGEEIKAVDEAGADWIHVDV----------MDGRFVPNITIGPLIVDAIRPL---------------------   60 (230)
T ss_dssp             GGSCGGGHHHHHHHHHHTTCSEEEEEE----------EBSSSSSCBCBCHHHHHHHGGG---------------------
T ss_pred             eecCHhHHHHHHHHHHHcCCCEEEEEE----------EecCCCcchhhhHHHHHHHHhh---------------------
Confidence            355655 45677778889999999997          2344445555444555444321                     


Q ss_pred             CCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEE-EccC----CCHHHH
Q psy3862         296 DFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKY----YTLEEW  370 (671)
Q Consensus       296 ~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgv-ihr~----~~~e~~  370 (671)
                                                    + +..++++++-.|  .   .+....+.+.|.=++ +|--    ..+.+.
T Consensus        61 ------------------------------~-~~~~~vhlmv~d--p---~~~i~~~~~aGadgv~vh~e~~~~~~~~~~  104 (230)
T 1tqj_A           61 ------------------------------T-KKTLDVHLMIVE--P---EKYVEDFAKAGADIISVHVEHNASPHLHRT  104 (230)
T ss_dssp             ------------------------------C-CSEEEEEEESSS--G---GGTHHHHHHHTCSEEEEECSTTTCTTHHHH
T ss_pred             ------------------------------c-CCcEEEEEEccC--H---HHHHHHHHHcCCCEEEECcccccchhHHHH
Confidence                                          0 123456666633  2   223445555665544 3433    245566


Q ss_pred             HHHHhcCcccccceeeecc-cCh-hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccC------c
Q psy3862         371 KAFAVQNPDVIKHVADGGC-TSP-GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG------G  442 (671)
Q Consensus       371 ~~~v~~~~~~~~~v~~~~~-~~~-~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~------~  442 (671)
                      ++.+++..   ..+..+.. .++ +.+.. +..++|++.+-.+..|...+..     .......+..+|+..+      .
T Consensus       105 ~~~i~~~g---~~~gv~~~p~t~~e~~~~-~~~~~D~v~~msv~pg~ggq~~-----~~~~~~~i~~lr~~~~~~~~~~~  175 (230)
T 1tqj_A          105 LCQIRELG---KKAGAVLNPSTPLDFLEY-VLPVCDLILIMSVNPGFGGQSF-----IPEVLPKIRALRQMCDERGLDPW  175 (230)
T ss_dssp             HHHHHHTT---CEEEEEECTTCCGGGGTT-TGGGCSEEEEESSCC----CCC-----CGGGHHHHHHHHHHHHHHTCCCE
T ss_pred             HHHHHHcC---CcEEEEEeCCCcHHHHHH-HHhcCCEEEEEEeccccCCccC-----cHHHHHHHHHHHHHHHhcCCCCc
Confidence            66665421   11222221 233 33333 3458998877644344332110     1111112233344331      2


Q ss_pred             -eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 -VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 -~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                       .++|| +...++.+..++|||++.||.
T Consensus       176 I~v~GG-I~~~~~~~~~~aGad~vvvGS  202 (230)
T 1tqj_A          176 IEVDGG-LKPNNTWQVLEAGANAIVAGS  202 (230)
T ss_dssp             EEEESS-CCTTTTHHHHHHTCCEEEESH
T ss_pred             EEEECC-cCHHHHHHHHHcCCCEEEECH
Confidence             56777 466677778899999999995

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=93.81  E-value=0.17  Score=50.18  Aligned_cols=121  Identities=19%  Similarity=0.190  Sum_probs=70.3

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEE---------e---------
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGN---------V---------  168 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~---------v---------  168 (671)
                      |+.+.-++.  +.+++..++.+  +++.+++....-   .-.+.++++.+.++....++-.         +         
T Consensus        76 pv~v~ggi~--~~~~~~~~l~~--Gad~V~lg~~~l---~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~  148 (244)
T 2y88_A           76 QVELSGGIR--DDESLAAALAT--GCARVNVGTAAL---ENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDG  148 (244)
T ss_dssp             EEEEESSCC--SHHHHHHHHHT--TCSEEEECHHHH---HCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEE
T ss_pred             cEEEECCCC--CHHHHHHHHHc--CCCEEEECchHh---hChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCC
Confidence            455544443  45567777777  788888764311   1112333333333322222112         1         


Q ss_pred             -ccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc---CCCE
Q psy3862         169 -VTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS---GADV  237 (671)
Q Consensus       169 -~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a---GAdg  237 (671)
                       ...+.++.+.++|+|.|.+-+  ..|+.       ..+++..+..+.   .+|  +.|||.+.+.+..++++   ||||
T Consensus       149 ~~~~e~~~~~~~~G~~~i~~~~~~~~~~~-------~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~  221 (244)
T 2y88_A          149 GDLWDVLERLDSEGCSRFVVTDITKDGTL-------GGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEG  221 (244)
T ss_dssp             EEHHHHHHHHHHTTCCCEEEEETTTTTTT-------SCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEE
T ss_pred             CCHHHHHHHHHhCCCCEEEEEecCCcccc-------CCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCE
Confidence             125778899999999886633  11110       012333333332   356  68999999999999999   9999


Q ss_pred             EEEc
Q psy3862         238 IKVG  241 (671)
Q Consensus       238 vkVG  241 (671)
                      +-||
T Consensus       222 v~vG  225 (244)
T 2y88_A          222 AIVG  225 (244)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9999

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=93.65  E-value=0.43  Score=48.48  Aligned_cols=62  Identities=21%  Similarity=0.135  Sum_probs=42.0

Q ss_pred             HHHHHHHHHCCCcEEEECcCCCceEEEEecccC-Ccchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGIGPGSVCTTRLKNKT-SDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~-~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+...++||++|-+-.-.+.         + .+...+..+.   .+|  .-+.|.+..++..+.++|||+|-+|
T Consensus        68 ~~~A~~~~~~GA~~isvlt~~~~---------f~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~  135 (254)
T 1vc4_A           68 VEAALAYARGGARAVSVLTEPHR---------FGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLI  135 (254)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCSS---------SCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEecchhh---------hccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEEC
Confidence            57889999999999966221110         1 1222222221   356  4677889989999999999999998

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=93.64  E-value=0.081  Score=51.68  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC--CceEE
Q psy3862         119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP--GSVCT  196 (671)
Q Consensus       119 ~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~--G~~~~  196 (671)
                      .++++..+..  +++.+++..   ....+.+..+    .+. ..++.+ +.|.+.++.+.+.|+|+|.+--.+  |-..+
T Consensus        70 ~~~i~~a~~~--Gad~V~~~~---~~~~~~~~~~----~~g-~~~~~g-~~t~~e~~~a~~~G~d~v~v~~t~~~g~~~~  138 (212)
T 2v82_A           70 PEQVDALARM--GCQLIVTPN---IHSEVIRRAV----GYG-MTVCPG-CATATEAFTALEAGAQALKIFPSSAFGPQYI  138 (212)
T ss_dssp             HHHHHHHHHT--TCCEEECSS---CCHHHHHHHH----HTT-CEEECE-ECSHHHHHHHHHTTCSEEEETTHHHHCHHHH
T ss_pred             HHHHHHHHHc--CCCEEEeCC---CCHHHHHHHH----HcC-CCEEee-cCCHHHHHHHHHCCCCEEEEecCCCCCHHHH
Confidence            4567777777  788887432   2233333332    232 233444 678888888899999999862211  10001


Q ss_pred             EEecccCCcchhhhhccccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         197 TRLKNKTSDFFLIQFYSCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       197 t~v~~~~~~~~~i~~i~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .++++..+        ..+|  +.|||. .+.+..++++||||+-||
T Consensus       139 ~~l~~~~~--------~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vG  176 (212)
T 2v82_A          139 KALKAVLP--------SDIAVFAVGGVT-PENLAQWIDAGCAGAGLG  176 (212)
T ss_dssp             HHHHTTSC--------TTCEEEEESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred             HHHHHhcc--------CCCeEEEeCCCC-HHHHHHHHHcCCCEEEEC
Confidence            11111111        0245  689996 899999999999999988

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.59  E-value=0.15  Score=53.04  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=53.6

Q ss_pred             HHHHHHHHCCCcEEEECcC--CCceEEEEecccCCcc-hhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEcccCC
Q psy3862         172 EMVEELILSGADVIKVGIG--PGSVCTTRLKNKTSDF-FLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVGIGPG  245 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga--~G~~~~t~v~~~~~~~-~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~  245 (671)
                      +-+++|.++|+|.|.+.+.  +...  ..+    .+. .++..+.   ..|++.-+.+.+.++.++++|++.|++-.+..
T Consensus        34 ~i~~~L~~~Gv~~IE~g~~~~~~~~--~~~----~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~aG~~~v~i~~~~s  107 (302)
T 2ftp_A           34 RLVDDLSAAGLDYIEVGSFVSPKWV--PQM----AGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAAS  107 (302)
T ss_dssp             HHHHHHHHTTCSEEEEEECSCTTTC--GGG----TTHHHHHHHSCCCTTSEEEEECCSHHHHHHHHHTTCCEEEEEEESC
T ss_pred             HHHHHHHHcCcCEEEECCCcCcccc--ccc----cCHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHhCCcCEEEEEEecC
Confidence            5577888999999987541  1000  000    000 0111111   12333334578999999999999998865443


Q ss_pred             CccccceecccCcc-hhhhHHHHHHHhhhcCCcc
Q psy3862         246 SVCTTRLKTGVGYP-QFSAVLECADAAHGLGGHI  278 (671)
Q Consensus       246 ~~~~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~~~  278 (671)
                      .....+ ..+..+- .+..+.++.+.||++|.++
T Consensus       108 ~~~~~~-~~~~s~ee~l~~~~~~v~~a~~~G~~V  140 (302)
T 2ftp_A          108 EAFSQR-NINCSIKDSLERFVPVLEAARQHQVRV  140 (302)
T ss_dssp             HHHHHH-HHSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHH-HhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence            321111 1122222 2455677788888776543

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=93.50  E-value=0.093  Score=52.35  Aligned_cols=120  Identities=14%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEe----------------cc
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNV----------------VT  170 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v----------------~t  170 (671)
                      |+.+.-|+  .+.+.+.+++..  +++.+++..+.   ..-.+.++++ +.++....++-.+                .+
T Consensus        75 pvi~~Ggi--~~~~~~~~~~~~--Gad~V~lg~~~---l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~  146 (241)
T 1qo2_A           75 HIQIGGGI--RSLDYAEKLRKL--GYRRQIVSSKV---LEDPSFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDP  146 (241)
T ss_dssp             GEEEESSC--CSHHHHHHHHHT--TCCEEEECHHH---HHCTTHHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCH
T ss_pred             cEEEECCC--CCHHHHHHHHHC--CCCEEEECchH---hhChHHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCH
Confidence            45444344  345566666666  77888775331   0111234555 4565322332233                23


Q ss_pred             HHHHHHHHHCCCcEEEECcC--CCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHc-----C-CCE
Q psy3862         171 GEMVEELILSGADVIKVGIG--PGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILS-----G-ADV  237 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga--~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~a-----G-Adg  237 (671)
                      .+.++.+.++|++.|.+-.-  .|+       ..-+++.++..+.   .+|  +.|||.+.+.++.++++     | |||
T Consensus       147 ~e~~~~~~~~G~~~i~~t~~~~~g~-------~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adg  219 (241)
T 1qo2_A          147 VSLLKRLKEYGLEEIVHTEIEKDGT-------LQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKG  219 (241)
T ss_dssp             HHHHHHHHTTTCCEEEEEETTHHHH-------TCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHhCCCCEEEEEeeccccc-------CCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeE
Confidence            46788899999998866220  010       0113444444442   356  68999999999999998     9 999


Q ss_pred             EEEc
Q psy3862         238 IKVG  241 (671)
Q Consensus       238 vkVG  241 (671)
                      +-||
T Consensus       220 v~vg  223 (241)
T 1qo2_A          220 VIVG  223 (241)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9999

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=93.46  E-value=0.22  Score=51.29  Aligned_cols=84  Identities=13%  Similarity=0.033  Sum_probs=45.2

Q ss_pred             HHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHH
Q psy3862         149 DFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVE  228 (671)
Q Consensus       149 ~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~  228 (671)
                      +.++++++.+....++.....+.+.++.+.++|||.|  |+..... ...+.+.....+     ..+++.-.+.|.+.+.
T Consensus        68 ~~i~~i~~~~~~Pvi~~~~~~~~~~~~~~~~aGad~v--~~~~~~~-~~~~~~~~~~~~-----~~i~l~~~v~~~~~~~  139 (297)
T 2zbt_A           68 KIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFI--DESEVLT-PADEEHHIDKWK-----FKVPFVCGARNLGEAL  139 (297)
T ss_dssp             HHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEE--EEETTSC-CSCSSCCCCGGG-----CSSCEEEEESSHHHHH
T ss_pred             HHHHHHHHhcCCCeEEEeccCCHHHHHHHHHCCCCEE--eeeCCCC-hHHHHHHHHHhC-----CCceEEeecCCHHHHH
Confidence            3455554443211223334556899999999999999  3211100 011100000000     0233444567888899


Q ss_pred             HHHHcCCCEEEE
Q psy3862         229 ELILSGADVIKV  240 (671)
Q Consensus       229 ~li~aGAdgvkV  240 (671)
                      .+.++|||.|.+
T Consensus       140 ~a~~~Gad~I~v  151 (297)
T 2zbt_A          140 RRIAEGAAMIRT  151 (297)
T ss_dssp             HHHHTTCSEEEE
T ss_pred             HHHHcCCCEEEE
Confidence            999999998633

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=93.43  E-value=0.19  Score=51.21  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=73.5

Q ss_pred             CcceEe----cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-ccceeeecc-cChhhHHHHHHcCCcE
Q psy3862         332 GVPIIA----ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVADGGC-TSPGDVAKAMGAGADF  405 (671)
Q Consensus       332 ~iPiIa----a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~~~~~-~~~~~~~~l~~aG~d~  405 (671)
                      ++|++-    .+++.-+..+++....+.|.=|++---.++|+..+++...++. +..+.-..- ++++++..+.+.+..+
T Consensus        94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gf  173 (262)
T 2ekc_A           94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEM  173 (262)
T ss_dssp             TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSC
T ss_pred             CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCC
Confidence            577776    2233334467888899999988888777888766665433221 121221122 3457777776666666


Q ss_pred             EEEccccccc---cc-----cccccccccccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         406 VMLGGMFAGH---DQ-----SGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       406 i~id~~a~gh---~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +... +..|.   ..     ...++          +..+|+... .+..|+-+.+.+.++.+.+|||+|.||.
T Consensus       174 iy~v-s~~g~TG~~~~~~~~~~~~~----------v~~vr~~~~~pv~vG~GI~t~e~~~~~~~gADgvIVGS  235 (262)
T 2ekc_A          174 TYFV-SVTGTTGAREKLPYERIKKK----------VEEYRELCDKPVVVGFGVSKKEHAREIGSFADGVVVGS  235 (262)
T ss_dssp             EEEE-SSCC---------CHHHHHH----------HHHHHHHCCSCEEEESSCCSHHHHHHHHTTSSEEEECH
T ss_pred             EEEE-ecCCccCCCCCcCcccHHHH----------HHHHHhhcCCCEEEeCCCCCHHHHHHHHcCCCEEEECH
Confidence            6554 22222   11     11123          333444432 2444555687888777999999999995

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=93.41  E-value=3  Score=43.02  Aligned_cols=27  Identities=15%  Similarity=-0.007  Sum_probs=22.3

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .++.-+..+.--|+.+.++|+|+|-+.
T Consensus        35 ~i~~~tayDa~sA~l~e~aG~d~ilvG   61 (281)
T 1oy0_A           35 KWAMLTAYDYSTARIFDEAGIPVLLVG   61 (281)
T ss_dssp             CEEEEECCSHHHHHHHHTTTCCEEEEC
T ss_pred             cEEEEeCcCHHHHHHHHHcCCCEEEEC
Confidence            355667788899999999999999875

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=93.33  E-value=0.37  Score=54.46  Aligned_cols=64  Identities=27%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             HHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHH-cCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELIL-SGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~-aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|.+-+  ..|+.       .-+++.++..+.   .+|  +.|||.+.+.++.+++ +||||+-+|
T Consensus       455 ~e~a~~~~~~Ga~~il~t~~~~dG~~-------~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg  526 (555)
T 1jvn_A          455 WELTRACEALGAGEILLNCIDKDGSN-------SGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA  526 (555)
T ss_dssp             HHHHHHHHHTTCCEEEECCGGGTTTC-------SCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEES
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCC-------CCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHH
Confidence            5889999999999998744  22321       124555555553   367  7899999999999998 899999999

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=93.11  E-value=0.11  Score=54.30  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      +.+.++..++.+|.. ++.-.+.+.+.++.++++|+|+|.+|...-.    .+++      .+..+. .+|  +.||| |
T Consensus       195 i~~ai~~~r~~~~~~-kI~vev~tlee~~eA~~aGaD~I~ld~~~~e----~l~~------~v~~~~~~~~I~ASGGI-t  262 (296)
T 1qap_A          195 VRQAVEKAFWLHPDV-PVEVEVENLDELDDALKAGADIIMLDNFNTD----QMRE------AVKRVNGQARLEVSGNV-T  262 (296)
T ss_dssp             HHHHHHHHHHHSTTS-CEEEEESSHHHHHHHHHTTCSEEEESSCCHH----HHHH------HHHTTCTTCCEEECCCS-C
T ss_pred             HHHHHHHHHHhCCCC-cEEEEeCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhCCCCeEEEECCC-C
Confidence            345667667777764 4444667788899999999999999852210    0110      011111 233  79999 9


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.++.++|||++-||
T Consensus       263 ~~~i~~~a~~GvD~isvG  280 (296)
T 1qap_A          263 AETLREFAETGVDFISVG  280 (296)
T ss_dssp             HHHHHHHHHTTCSEEECS
T ss_pred             HHHHHHHHHcCCCEEEEe
Confidence            999999999999988665

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=93.09  E-value=0.027  Score=58.10  Aligned_cols=84  Identities=20%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceE---EEEecccCCcchhhhhccccC--Cccccc
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVC---TTRLKNKTSDFFLIQFYSCIP--QAGNVV  222 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~---~t~v~~~~~~~~~i~~i~~~p--~aGnV~  222 (671)
                      .+.++..++.+|...++.-.+.|.+.++.++++|+|+|.+|...-...   .+.+...+|+         +|  +.||| 
T Consensus       169 ~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~~~~~~---------~~i~AsGGI-  238 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDAHYPF---------VLLEASGNI-  238 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEEEESSHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHHHHHCTT---------CEEEEESSC-
T ss_pred             HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCC---------cEEEEECCC-
Confidence            556676666777544444467788889999999999999876221000   0001111111         33  79999 


Q ss_pred             cHHHHHHHHHcCCCEEEEc
Q psy3862         223 TGEMVEELILSGADVIKVG  241 (671)
Q Consensus       223 t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+.+++++|||++-||
T Consensus       239 ~~~ni~~~~~aGaD~i~vG  257 (273)
T 2b7n_A          239 SLESINAYAKSGVDAISVG  257 (273)
T ss_dssp             CTTTHHHHHTTTCSEEECT
T ss_pred             CHHHHHHHHHcCCcEEEEc
Confidence            9999999999999988665

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=93.00  E-value=0.24  Score=55.98  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccH-----------HHHHHHHHCCCcEEEECc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTG-----------EMVEELILSGADVIKVGI  189 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~-----------e~a~~Li~AGaD~IvVdg  189 (671)
                      ..+.++++++..+....++|.+.+.           +.++.++++|||.|++++
T Consensus       315 ~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt  368 (555)
T 1jvn_A          315 MLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGT  368 (555)
T ss_dssp             HHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECH
T ss_pred             HHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECC
Confidence            4667777765554445667777665           669999999999999976

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=92.97  E-value=0.9  Score=45.60  Aligned_cols=128  Identities=19%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             CcceEecCCCCCCCHHHHHHHHHcCCeEEEccC--C----CHHHHHHHHhcCc---ccc----c--------ceeeecc-
Q psy3862         332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY--Y----TLEEWKAFAVQNP---DVI----K--------HVADGGC-  389 (671)
Q Consensus       332 ~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~--~----~~e~~~~~v~~~~---~~~----~--------~v~~~~~-  389 (671)
                      ++|+|..  +-+.+.+-+..+.+.|.=+++=-.  +    +++...+.++...   +.+    .        .+..-+. 
T Consensus        74 ~iPvi~~--ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~  151 (266)
T 2w6r_A           74 TLPIIAS--GGAGKMEHFLEAFLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGK  151 (266)
T ss_dssp             CSCEEEE--SCCCSTHHHHHHHHHTCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTT
T ss_pred             CCCEEEE--CCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCc
Confidence            5888883  556665556666667765555432  2    5555555544433   111    1        0111111 


Q ss_pred             ----cChhhH-HHHHHcCCcEEEEcccc-cccccc-ccccccccccccccccccccccCceeeccccCchhHHHHHHcCC
Q psy3862         390 ----TSPGDV-AKAMGAGADFVMLGGMF-AGHDQS-GGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGA  462 (671)
Q Consensus       390 ----~~~~~~-~~l~~aG~d~i~id~~a-~gh~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGA  462 (671)
                          .+..++ .++.++|++.|++-++. .|.... -+++++.++...        -++-+..||+-...++.+++.+||
T Consensus       152 ~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~--------~ipvia~GGI~~~ed~~~~~~~Ga  223 (266)
T 2w6r_A          152 KNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT--------TLPIIASGGAGKMEHFLEAFLAGA  223 (266)
T ss_dssp             EEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGC--------CSCEEEESCCCSHHHHHHHHHHTC
T ss_pred             eecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHc--------CCCEEEeCCCCCHHHHHHHHHcCC
Confidence                123444 55578999999984322 233211 123322222210        011134566433467777788999


Q ss_pred             cEEEECc
Q psy3862         463 DFVMLGG  469 (671)
Q Consensus       463 d~V~vG~  469 (671)
                      |+|+||.
T Consensus       224 dgv~vgs  230 (266)
T 2w6r_A          224 DAALAAS  230 (266)
T ss_dssp             SEEEEST
T ss_pred             HHHHccH
Confidence            9999996

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=92.95  E-value=2.3  Score=40.85  Aligned_cols=103  Identities=18%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHH---hCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEE
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIRE---MYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCT  196 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~---~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~  196 (671)
                      +.++.+.+.  +++.+.+...+.......+.++.+++   .+. ..++. +    +.++.+.++|+|.|.+....-.  .
T Consensus        30 ~~~~~~~~~--G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~-v~v~v-~----~~~~~a~~~gad~v~l~~~~~~--~   99 (215)
T 1xi3_A           30 ESVREALEG--GATAIQMRIKNAPTREMYEIGKTLRQLTREYD-ALFFV-D----DRVDVALAVDADGVQLGPEDMP--I   99 (215)
T ss_dssp             HHHHHHHHT--TCSEEEECCCSCCHHHHHHHHHHHHHHHHHTT-CEEEE-E----SCHHHHHHHTCSEEEECTTSCC--H
T ss_pred             HHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHHHHcC-CeEEE-c----ChHHHHHHcCCCEEEECCccCC--H
Confidence            556667776  78888776543333445555555543   232 22333 2    5667788999999976322100  0


Q ss_pred             EEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         197 TRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       197 t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+++..+         .+..+-.+.|.+.+..+.+.|+|.+.++
T Consensus       100 ~~~~~~~~---------~~~~~v~~~t~~e~~~~~~~g~d~i~~~  135 (215)
T 1xi3_A          100 EVAKEIAP---------NLIIGASVYSLEEALEAEKKGADYLGAG  135 (215)
T ss_dssp             HHHHHHCT---------TSEEEEEESSHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHhCC---------CCEEEEecCCHHHHHHHHhcCCCEEEEc
Confidence            00100000         0012223456777777888899988775

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=92.80  E-value=0.6  Score=46.88  Aligned_cols=64  Identities=27%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             HHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|++.|.+-.  ..|+.       ..+++..+..+.   .+|  +.|||.+.+.++.++++||||+-||
T Consensus       159 ~e~~~~~~~~G~~~i~~t~~~~~g~~-------~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg  229 (266)
T 2w6r_A          159 RDWVVEVEKRGAGEILLTSIDRDGTK-------SGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA  229 (266)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTTTTTC-------SCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHHHHHHHcCCCEEEEEeecCCCCc-------CCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence            5778899999999997632  12210       112333333332   356  7899999999999999999999999

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=92.74  E-value=0.74  Score=44.94  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHH---HHHHHHHH---HhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTF---VDFVRRIR---EMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS  193 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~---~~~ik~lr---~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~  193 (671)
                      +.++.+.+.  +++.+.+....+.+..+   .+.++.++   +.+.. .++. +    +.++.+.++|+|.|.+....- 
T Consensus        35 ~~~~~~~~~--G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v-~v~v-~----~~~~~a~~~gad~v~l~~~~~-  105 (227)
T 2tps_A           35 TVVQKALKG--GATLYQFREKGGDALTGEARIKFAEKAQAACREAGV-PFIV-N----DDVELALNLKADGIHIGQEDA-  105 (227)
T ss_dssp             HHHHHHHHH--TCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTC-CEEE-E----SCHHHHHHHTCSEEEECTTSS-
T ss_pred             HHHHHHHHC--CCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCC-eEEE-c----CHHHHHHHcCCCEEEECCCcc-
Confidence            456667777  78888877554444444   44444443   22221 2222 2    456678899999997732110 


Q ss_pred             eEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         194 VCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       194 ~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       ....+++..+         .+.++-.+.|.+.+..+.++|+|.+.+|
T Consensus       106 -~~~~~~~~~g---------~~~~~~s~~t~~e~~~a~~~g~d~v~~~  143 (227)
T 2tps_A          106 -NAKEVRAAIG---------DMILGVSAHTMSEVKQAEEDGADYVGLG  143 (227)
T ss_dssp             -CHHHHHHHHT---------TSEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             -CHHHHHHhcC---------CcEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence             0000110000         0001112356666777888889988874

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=92.59  E-value=0.15  Score=65.50  Aligned_cols=45  Identities=11%  Similarity=0.175  Sum_probs=39.7

Q ss_pred             cceEecCCC-CCCCHHHHHHHHHcCCeEEEc--cCCCHHHHHHHHhcC
Q psy3862         333 VPIIAANMD-TVGTFEMAKHLAKHGLFTTIH--KYYTLEEWKAFAVQN  377 (671)
Q Consensus       333 iPiIaa~MD-tV~~~~mA~~la~~Gglgvih--r~~~~e~~~~~v~~~  377 (671)
                      -|||-+.|- ++++.++|.+.+..||+|+|-  -++++|+..++|++.
T Consensus       590 ~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~  637 (2051)
T 2uv8_G          590 PPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSV  637 (2051)
T ss_dssp             CSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHH
T ss_pred             cceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHH
Confidence            599999998 777999999999999999994  478899888888764

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=92.58  E-value=0.55  Score=46.74  Aligned_cols=120  Identities=22%  Similarity=0.322  Sum_probs=69.6

Q ss_pred             ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccC-CCChHHHHHHHHHHHhCC-CceEEEEEe----------------
Q psy3862         107 HVAVSSGISAKDLAGLKEILAALPEIEYICLDVAN-GYTQTFVDFVRRIREMYP-KHVIIAGNV----------------  168 (671)
Q Consensus       107 ~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~-G~~~~~~~~ik~lr~~~P-~~~li~g~v----------------  168 (671)
                      |+.+.-++  .+.+++.+++.+  +++.+++..+. .++.    .++++.+.++ ....++-..                
T Consensus        76 pvi~~ggI--~~~~~~~~~~~~--Gad~V~lg~~~l~~p~----~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~  147 (253)
T 1thf_D           76 PFTVGGGI--HDFETASELILR--GADKVSINTAAVENPS----LITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKK  147 (253)
T ss_dssp             CEEEESSC--CSHHHHHHHHHT--TCSEEEESHHHHHCTH----HHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE
T ss_pred             CEEEeCCC--CCHHHHHHHHHc--CCCEEEEChHHHhChH----HHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCcc
Confidence            55554444  345567777776  78888775431 1122    2333333332 112222222                


Q ss_pred             ----ccHHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCE
Q psy3862         169 ----VTGEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADV  237 (671)
Q Consensus       169 ----~t~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdg  237 (671)
                          ...+.++.+.++|+|.|.+-+  ..|+.       ..+++.++..+.   .+|  +.|||.+.+.+..++++||||
T Consensus       148 ~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~-------~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadg  220 (253)
T 1thf_D          148 NTGILLRDWVVEVEKRGAGEILLTSIDRDGTK-------SGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADA  220 (253)
T ss_dssp             EEEEEHHHHHHHHHHTTCSEEEEEETTTTTSC-------SCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             ccCCCHHHHHHHHHHCCCCEEEEEeccCCCCC-------CCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChH
Confidence                235778999999999887632  11210       012233333332   356  689999999999999999999


Q ss_pred             EEEc
Q psy3862         238 IKVG  241 (671)
Q Consensus       238 vkVG  241 (671)
                      +-||
T Consensus       221 v~vG  224 (253)
T 1thf_D          221 ALAA  224 (253)
T ss_dssp             EEES
T ss_pred             HHHH
Confidence            9998

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=92.56  E-value=0.62  Score=44.98  Aligned_cols=104  Identities=22%  Similarity=0.260  Sum_probs=59.9

Q ss_pred             HHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc-CCCceEEEEeccc
Q psy3862         124 EILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI-GPGSVCTTRLKNK  202 (671)
Q Consensus       124 ~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg-a~G~~~~t~v~~~  202 (671)
                      ...+.  +++.+++..... +   .+.++++   ++ ..+++..+.|.+.+..+.+.|+|.|.++. -++.. -...  .
T Consensus        81 ~a~~~--gad~v~l~~~~~-~---~~~~~~~---~~-~~~~~v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~-~~~~--~  147 (215)
T 1xi3_A           81 VALAV--DADGVQLGPEDM-P---IEVAKEI---AP-NLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKT-KEDA--R  147 (215)
T ss_dssp             HHHHH--TCSEEEECTTSC-C---HHHHHHH---CT-TSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC-----CC--C
T ss_pred             HHHHc--CCCEEEECCccC-C---HHHHHHh---CC-CCEEEEecCCHHHHHHHHhcCCCEEEEcCCccCCC-CCCC--C
Confidence            34444  678887642211 1   2233332   22 23444456787778888899999999864 11100 0000  0


Q ss_pred             CCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         203 TSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       203 ~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+..+..+.   .+|  ++|||. .+.+..++++|||||-||
T Consensus       148 ~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vg  190 (215)
T 1xi3_A          148 VIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAVI  190 (215)
T ss_dssp             CCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEES
T ss_pred             CcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEEh
Confidence            01122222221   346  689998 999999999999999988

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=92.53  E-value=0.15  Score=51.56  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             HHHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHhCCCc-eEE-EEE-eccHHHHH----HHHHCCCcEEEECc
Q psy3862         120 AGLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREMYPKH-VII-AGN-VVTGEMVE----ELILSGADVIKVGI  189 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~~P~~-~li-~g~-v~t~e~a~----~Li~AGaD~IvVdg  189 (671)
                      ..+++.++...++--+++|...   |....+.+-++.+++..+.. .++ --. --+.+...    ...++|||+|+..+
T Consensus        99 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTST  178 (239)
T 3ngj_A           99 YETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTST  178 (239)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             HHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCC
Confidence            3555666663233334555432   44455566666666543321 121 111 12443333    34789999999875


Q ss_pred             C--CCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEccc
Q psy3862         190 G--PGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIG  243 (671)
Q Consensus       190 a--~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~  243 (671)
                      +  .|..          ++..++.+.     .++  ++|||-|.+.+.+++++||+  |+|..
T Consensus       179 Gf~~ggA----------t~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~--riGtS  229 (239)
T 3ngj_A          179 GFGTHGA----------TPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGAS--RIGAS  229 (239)
T ss_dssp             SSSSCCC----------CHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEE--EEEES
T ss_pred             CCCCCCC----------CHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhccc--ceecc
Confidence            3  2211          111111111     133  79999999999999999999  66643

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=92.52  E-value=0.89  Score=43.95  Aligned_cols=126  Identities=18%  Similarity=0.164  Sum_probs=71.3

Q ss_pred             CceEEecCCCccccHHHHHHHHHcCCeEE-eecCCCHHH---HHHhhhcCcccccceEEecCCChhh-HHHHHHHHHhCC
Q psy3862          56 GVPIIAANMDTVGTFEMAKHLAKHGLFTT-IHKYYTLEE---WKAFAVQNPDVIKHVAVSSGISAKD-LAGLKEILAALP  130 (671)
Q Consensus        56 ~~Piv~a~M~~vt~~~lA~Ala~~gglgv-Ih~n~~~Ee---q~~~i~~~p~~~~~~~v~~G~~~~d-~~rl~~l~~a~~  130 (671)
                      +.||....|..-.....+....+.|.=++ +|.....+.   ..+..++..   .++.+.. .++.+ .++++.+.+.  
T Consensus        53 ~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g---~~~~v~~-~~~~t~~~~~~~~~~~--  126 (211)
T 3f4w_A           53 HKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAG---KQVVVDM-ICVDDLPARVRLLEEA--  126 (211)
T ss_dssp             TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHT---CEEEEEC-TTCSSHHHHHHHHHHH--
T ss_pred             CCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcC---CeEEEEe-cCCCCHHHHHHHHHHc--
Confidence            56886655533222344666677776565 775443232   222222211   1222210 12223 3667777777  


Q ss_pred             CceEEEeeccCCCC-----hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         131 EIEYICLDVANGYT-----QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       131 ~~d~Ivld~a~G~~-----~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +.+++.++.  |..     ....+.++++++.+|...++++...+.+.++.+.++|+|.+++.+
T Consensus       127 g~d~i~v~~--g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGs  188 (211)
T 3f4w_A          127 GADMLAVHT--GTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGS  188 (211)
T ss_dssp             TCCEEEEEC--CHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECH
T ss_pred             CCCEEEEcC--CCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECH
Confidence            678887762  211     113567777777766666655543468999999999999998853

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=92.47  E-value=0.59  Score=48.41  Aligned_cols=101  Identities=12%  Similarity=0.034  Sum_probs=53.5

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc-hhhhhcccc---CCccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF-FLIQFYSCI---PQAGNVVTGEMVEELILSGADVIKVGIGPGSV  247 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~-~~i~~i~~~---p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~  247 (671)
                      +-++.|.++|+|.|.+.+  +.+. +.+ +...+. .++..+...   +..+=+.+.+++..++++|+|.|+|-+.....
T Consensus        31 ~i~~~L~~~Gv~~IE~g~--~~~~-~~~-p~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~ag~~~v~i~~~~sd~  106 (298)
T 2cw6_A           31 KLIDMLSEAGLSVIETTS--FVSP-KWV-PQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASEL  106 (298)
T ss_dssp             HHHHHHHHTTCSEECCEE--CCCT-TTC-GGGTTHHHHHHHSCCCTTCBCCEECCSHHHHHHHHHTTCSEEEEEEESCHH
T ss_pred             HHHHHHHHcCcCEEEECC--CcCc-ccc-cccCCHHHHHHHHhhCCCCEEEEEcCCHHhHHHHHHCCCCEEEEEecCCHH
Confidence            457788999999997753  1100 000 000010 011111111   12333357889999999999999985432222


Q ss_pred             cccceecccCcch-hhhHHHHHHHhhhcCCc
Q psy3862         248 CTTRLKTGVGYPQ-FSAVLECADAAHGLGGH  277 (671)
Q Consensus       248 ~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~~  277 (671)
                      - .+...+..+.+ +..+.++.++++++|.+
T Consensus       107 ~-~~~~~~~~~~e~l~~~~~~i~~a~~~G~~  136 (298)
T 2cw6_A          107 F-TKKNINCSIEESFQRFDAILKAAQSANIS  136 (298)
T ss_dssp             H-HHHHHSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             H-HHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence            1 12233333333 45667778888877644

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=92.40  E-value=0.12  Score=51.68  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=23.8

Q ss_pred             ceeeecccChhhHHHHHHcCCcEEEEc
Q psy3862         383 HVADGGCTSPGDVAKAMGAGADFVMLG  409 (671)
Q Consensus       383 ~v~~~~~~~~~~~~~l~~aG~d~i~id  409 (671)
                      .+.+.||++++.+..+.++|+|.+++.
T Consensus       175 ~I~v~GGI~~~~~~~~~~aGad~vvvG  201 (230)
T 1tqj_A          175 WIEVDGGLKPNNTWQVLEAGANAIVAG  201 (230)
T ss_dssp             EEEEESSCCTTTTHHHHHHTCCEEEES
T ss_pred             cEEEECCcCHHHHHHHHHcCCCEEEEC
Confidence            367788898899999999999999987

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=92.40  E-value=0.77  Score=45.25  Aligned_cols=112  Identities=18%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             HHHHHHHcCCeEE-EccC--C--CHHHHHHHHhcCcccccceeeec--ccChhhHHHHHHcCCcEEEEcccccccccccc
Q psy3862         348 MAKHLAKHGLFTT-IHKY--Y--TLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGG  420 (671)
Q Consensus       348 mA~~la~~Gglgv-ihr~--~--~~e~~~~~v~~~~~~~~~v~~~~--~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~  420 (671)
                      .+....+.|.=++ +|-.  .  .+++..+.+++..  +. +..+.  .+..+++.. ...++|++.+++...|......
T Consensus        83 ~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g--~~-ig~~~~p~t~~e~~~~-~~~~~d~vl~~~~~pg~~g~~~  158 (230)
T 1rpx_A           83 RVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLG--AK-AGVVLNPGTPLTAIEY-VLDAVDLVLIMSVNPGFGGQSF  158 (230)
T ss_dssp             HHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTT--SE-EEEEECTTCCGGGGTT-TTTTCSEEEEESSCTTCSSCCC
T ss_pred             HHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcC--Cc-EEEEeCCCCCHHHHHH-HHhhCCEEEEEEEcCCCCCccc
Confidence            5555566665444 3554  2  3455666665431  11 22222  122233332 3468999988855445532211


Q ss_pred             ccccccccccccccccccccC------c-eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         421 ELTNIEYMFFPLVGDMNSYLG------G-VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~------~-~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      ..     .....+..+++..+      . +++|| +...++.+++.+|||+|-||.
T Consensus       159 ~~-----~~~~~i~~l~~~~~~~~~~~pi~v~GG-I~~~n~~~~~~aGad~vvvgS  208 (230)
T 1rpx_A          159 IE-----SQVKKISDLRKICAERGLNPWIEVDGG-VGPKNAYKVIEAGANALVAGS  208 (230)
T ss_dssp             CT-----THHHHHHHHHHHHHHHTCCCEEEEESS-CCTTTHHHHHHHTCCEEEESH
T ss_pred             cH-----HHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHcCCCEEEECh
Confidence            10     00111222333221      1 45677 467777788899999999985

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=92.23  E-value=0.37  Score=49.62  Aligned_cols=128  Identities=15%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             cCceEEecCCCcc------ccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceEEecCCChhhHHHHHHHHH
Q psy3862          55 QGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVAVSSGISAKDLAGLKEILA  127 (671)
Q Consensus        55 l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~v~~G~~~~d~~rl~~l~~  127 (671)
                      .++|++.  |++.      +..+++..++.+|.=|+|=..+++||..++..... .-+..+.+....+  ..+|++++.+
T Consensus        96 ~~~Pivl--m~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t--~~eri~~i~~  171 (271)
T 3nav_A           96 PETPIGL--LMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTA--SDETLRAVAQ  171 (271)
T ss_dssp             TTSCEEE--EECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTC--CHHHHHHHHH
T ss_pred             CCCCEEE--EecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCC--CHHHHHHHHH
Confidence            4779875  5542      33678888888888897666777776443332111 1122232221122  2467877777


Q ss_pred             hCCCceEEEeeccCC-------CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         128 ALPEIEYICLDVANG-------YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       128 a~~~~d~Ivld~a~G-------~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ...  .++..-...|       .+....+.++++|+... ..+++| .+.+++.++..+++|||.++|++
T Consensus       172 ~~~--gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~vGfGIst~e~~~~~~~~gADgvIVGS  238 (271)
T 3nav_A          172 LGK--GYTYLLSRAGVTGAETKANMPVHALLERLQQFDA-PPALLGFGISEPAQVKQAIEAGAAGAISGS  238 (271)
T ss_dssp             HCC--SCEEECCCC--------CCHHHHHHHHHHHHTTC-CCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             HCC--CeEEEEeccCCCCcccCCchhHHHHHHHHHHhcC-CCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence            633  3443321222       24556778888877543 345555 67799999989999999999843

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=92.07  E-value=0.59  Score=46.50  Aligned_cols=64  Identities=20%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             HHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|++.|.+-.  ..|+.       .-+++.++..+.   .+|  +.|||.+.+.++.++++||||+-||
T Consensus       155 ~e~~~~~~~~G~~~i~~~~~~~~g~~-------~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vg  225 (252)
T 1ka9_F          155 VEWAVKGVELGAGEILLTSMDRDGTK-------EGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAA  225 (252)
T ss_dssp             HHHHHHHHHHTCCEEEEEETTTTTTC-------SCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHcCCCEEEEecccCCCCc-------CCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHH
Confidence            6888999999999886532  11210       112344443332   356  6899999999999999999999998

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=92.05  E-value=0.28  Score=47.63  Aligned_cols=109  Identities=19%  Similarity=0.041  Sum_probs=56.8

Q ss_pred             HHHHHHHcCCeEEEccCCCH----HHHHHHHhcCcccccceee-ecccCh-hhHHHHHHcCCcEEEEccccccccc--cc
Q psy3862         348 MAKHLAKHGLFTTIHKYYTL----EEWKAFAVQNPDVIKHVAD-GGCTSP-GDVAKAMGAGADFVMLGGMFAGHDQ--SG  419 (671)
Q Consensus       348 mA~~la~~Gglgvihr~~~~----e~~~~~v~~~~~~~~~v~~-~~~~~~-~~~~~l~~aG~d~i~id~~a~gh~~--~~  419 (671)
                      ++....+.|.=+++=...+.    ++..+.+++..  ++.+.. ....++ +++.++.++|+|+++++-...|...  ..
T Consensus        69 ~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g--~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~  146 (211)
T 3f4w_A           69 ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAG--KQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKP  146 (211)
T ss_dssp             HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHT--CEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHHTTCCS
T ss_pred             HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCCC
Confidence            47777777765443323332    33444443321  111111 112233 5566678899999988611112211  12


Q ss_pred             cccccccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         420 GELTNIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .+.++.          +++.+++   .+.||+ ...++.+++++|||+|.||.
T Consensus       147 ~~~i~~----------l~~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGs  188 (211)
T 3f4w_A          147 IDDLIT----------MLKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGS  188 (211)
T ss_dssp             HHHHHH----------HHHHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECH
T ss_pred             HHHHHH----------HHHHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECH
Confidence            233333          3333222   356665 56666778899999999985

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=92.03  E-value=0.11  Score=52.52  Aligned_cols=99  Identities=17%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccC--Ccchh
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKT--SDFFL  208 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~--~~~~~  208 (671)
                      +++.+++..... +      ...+|+..+...+++..+.|.+.++.+.+.|+|+|.+..--.+    ..++..  ..+..
T Consensus       112 gAdGVHLg~~dl-~------~~~~r~~~~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T----~tK~~~~~~gl~~  180 (243)
T 3o63_A          112 GADVLHLGQRDL-P------VNVARQILAPDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPT----PTKPGRAAPGLGL  180 (243)
T ss_dssp             TCSEEEECTTSS-C------HHHHHHHSCTTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCC----CC-----CCCHHH
T ss_pred             CCCEEEecCCcC-C------HHHHHHhhCCCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCC----CCCCCcchhhHHH
Confidence            667777753321 1      1233344444456776788999999999999999988431111    111111  11222


Q ss_pred             hhhc-----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         209 IQFY-----SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       209 i~~i-----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +..+     ..+|  +.||| |.+.+..++++|||||-||
T Consensus       181 l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~  219 (243)
T 3o63_A          181 VRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVV  219 (243)
T ss_dssp             HHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEES
T ss_pred             HHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEe
Confidence            2222     1356  68999 9999999999999999887

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=91.98  E-value=0.9  Score=46.59  Aligned_cols=27  Identities=15%  Similarity=0.112  Sum_probs=22.6

Q ss_pred             eEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         162 VIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       162 ~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      .+++-+..+.--|+.+.++|+|+|-+.
T Consensus        18 ~i~~~tayD~~sA~l~e~aG~d~ilvG   44 (264)
T 1m3u_A           18 RFATITAYDYSFAKLFADEGLNVMLVG   44 (264)
T ss_dssp             CEEEEECCSHHHHHHHHHHTCCEEEEC
T ss_pred             cEEEEeCcCHHHHHHHHHcCCCEEEEC
Confidence            355667788899999999999999994

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=91.95  E-value=0.32  Score=50.43  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             HHHHHHHHhCCCceE--EEeeccC---CCChHHHHHHHHHHHhCCCc-eE-EEEE-eccHHH----HHHHHHCCCcEEEE
Q psy3862         120 AGLKEILAALPEIEY--ICLDVAN---GYTQTFVDFVRRIREMYPKH-VI-IAGN-VVTGEM----VEELILSGADVIKV  187 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~--Ivld~a~---G~~~~~~~~ik~lr~~~P~~-~l-i~g~-v~t~e~----a~~Li~AGaD~IvV  187 (671)
                      ..+++.++.  +++-  +++|...   |....+.+-++.+++..+.. .+ |--. ..+.+.    ++...++|||+|+-
T Consensus       130 ~Ea~~Ai~~--GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKT  207 (288)
T 3oa3_A          130 SEAKRAMQN--GASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKT  207 (288)
T ss_dssp             HHHHHHHHT--TCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHc--CCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEc
Confidence            356667776  4444  4566432   34455566666666654221 21 1111 123333    66778899999988


Q ss_pred             CcCCCceEEEEecccCCcchhhhh-cc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         188 GIGPGSVCTTRLKNKTSDFFLIQF-YS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       188 dga~G~~~~t~v~~~~~~~~~i~~-i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+=+..     ....+++.++.. +.    .++  ++|||-|.+++++++++||+  |+|
T Consensus       208 STGf~~~-----GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~--RiG  261 (288)
T 3oa3_A          208 STGFNGP-----GASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAE--RLG  261 (288)
T ss_dssp             CCSSSSC-----CCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCS--EEE
T ss_pred             CCCCCCC-----CCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCc--eee
Confidence            6531100     000011111111 10    133  79999999999999999999  456

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=91.32  E-value=0.76  Score=45.15  Aligned_cols=64  Identities=25%  Similarity=0.192  Sum_probs=44.0

Q ss_pred             HHHHHHHHHCCCcEEEECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKVGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++.+.++|+|.|.+-.  ..|+.       ..+++..+..+.   .+|  +.|||.+.+.+..++++|||++-||
T Consensus       157 ~e~~~~~~~~G~d~i~~~~~~~~g~~-------~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vg  227 (253)
T 1h5y_A          157 VKWAKEVEELGAGEILLTSIDRDGTG-------LGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAA  227 (253)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTTTTTC-------SCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHhCCCCEEEEecccCCCCc-------CcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHH
Confidence            4778899999999997733  11110       001222222221   346  6899999999999999999999998

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=91.26  E-value=0.056  Score=56.51  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-c---cC--Ccccc
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-C---IP--QAGNV  221 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~---~p--~aGnV  221 (671)
                      .+.++..++.+|...++.-.+.|.+.++.++++|+|+|.+|...-    ..+++      .++.+. .   +|  +.|||
T Consensus       184 ~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~~~----~~l~~------~v~~l~~~~~~~~I~ASGGI  253 (299)
T 2jbm_A          184 EKAVRAARQAADFALKVEVECSSLQEAVQAAEAGADLVLLDNFKP----EELHP------TATVLKAQFPSVAVEASGGI  253 (299)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHTTCSEEEEESCCH----HHHHH------HHHHHHHHCTTSEEEEESSC
T ss_pred             HHHHHHHHHhCCcCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH----HHHHH------HHHHhhccCCCeeEEEECCC
Confidence            455666666666533444466778889989999999999976220    00110      001111 1   23  79999


Q ss_pred             ccHHHHHHHHHcCCCEEEEc
Q psy3862         222 VTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       222 ~t~~~a~~li~aGAdgvkVG  241 (671)
                       |.+.+.++.++|||++=||
T Consensus       254 -t~~ni~~~~~aGaD~i~vG  272 (299)
T 2jbm_A          254 -TLDNLPQFCGPHIDVISMG  272 (299)
T ss_dssp             -CTTTHHHHCCTTCCEEECT
T ss_pred             -CHHHHHHHHHCCCCEEEEC
Confidence             9999999999999988554

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=91.20  E-value=1.2  Score=45.57  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             eccccCchhHHHHHHcCCcEEEECc
Q psy3862         445 DGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       445 ~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .||+-.+.+++++|+.|||+|.||.
T Consensus       193 eGGI~TPsDAa~AmeLGAdgVlVgS  217 (265)
T 1wv2_A          193 DAGVGTASDAAIAMELGCEAVLMNT  217 (265)
T ss_dssp             ESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred             eCCCCCHHHHHHHHHcCCCEEEECh
Confidence            6886566666778999999999985

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=91.12  E-value=1.1  Score=47.42  Aligned_cols=112  Identities=24%  Similarity=0.368  Sum_probs=69.4

Q ss_pred             HHHhCCCceEEEeeccCCCC--------------------h----HHHHHHHHHHHh--CCCceEEEEEe---------c
Q psy3862         125 ILAALPEIEYICLDVANGYT--------------------Q----TFVDFVRRIREM--YPKHVIIAGNV---------V  169 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~--------------------~----~~~~~ik~lr~~--~P~~~li~g~v---------~  169 (671)
                      ..++  +.|.|-++.+||+.                    +    -..+.++.+|+.  +|...++...-         .
T Consensus       153 a~~a--GfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~  230 (340)
T 3gr7_A          153 AKEA--GFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKD  230 (340)
T ss_dssp             HHHH--TCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGG
T ss_pred             HHHc--CCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHH
Confidence            4455  77888888887651                    1    134556666654  57666666431         1


Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG  241 (671)
                      ..+.++.|.++|+|+|.+-.+. ... ... ...+  .+..+..++   .+|  ..|+|-|.+.+..+++.| ||.|-+|
T Consensus       231 ~~~la~~L~~~Gvd~i~vs~g~-~~~-~~~-~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iG  307 (340)
T 3gr7_A          231 YVPYAKRMKEQGVDLVDVSSGA-IVP-ARM-NVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLG  307 (340)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCC-SSC-CCC-CCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEecCC-ccC-CCC-CCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEec
Confidence            2477889999999999874211 110 000 0011  122222232   356  689999999999999999 9999777

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=91.05  E-value=0.3  Score=51.10  Aligned_cols=101  Identities=11%  Similarity=0.016  Sum_probs=53.1

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcc-hhhhhccccC---CccccccHHHHHHHHHcCCCEEEEcccCCCc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDF-FLIQFYSCIP---QAGNVVTGEMVEELILSGADVIKVGIGPGSV  247 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~-~~i~~i~~~p---~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~  247 (671)
                      +-++.|.++|+|.|-+.+.. +.  +.+. ...+. .++..+...|   +.+=+...++++.++++|+|.|++-+.....
T Consensus        32 ~i~~~L~~~Gv~~IE~g~~~-~~--~~~p-~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~~g~~~v~i~~~~sd~  107 (307)
T 1ydo_A           32 TWINQLSRTGLSYIEITSFV-HP--KWIP-ALRDAIDVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFMSASET  107 (307)
T ss_dssp             HHHHHHHTTTCSEEEEEECS-CT--TTCG-GGTTHHHHHHHSCCCTTCEEEEECCSHHHHHHHHHHTCSEEEEEEESSHH
T ss_pred             HHHHHHHHcCCCEEEECCCc-Cc--cccc-ccCCHHHHHHHhhhcCCCeEEEEeCCHHhHHHHHhCCcCEEEEEeecCHH
Confidence            55778899999999885410 00  0000 00000 0111111111   2222235788999999999999988533222


Q ss_pred             cccceecccCcch-hhhHHHHHHHhhhcCCc
Q psy3862         248 CTTRLKTGVGYPQ-FSAVLECADAAHGLGGH  277 (671)
Q Consensus       248 ~~Tr~V~gv~~~~-~~~~~~~~~~~~~~~~~  277 (671)
                      - .+...+..+-+ +..+.++.++++++|.+
T Consensus       108 ~-~~~~l~~s~~e~l~~~~~~v~~ak~~G~~  137 (307)
T 1ydo_A          108 H-NRKNINKSTSESLHILKQVNNDAQKANLT  137 (307)
T ss_dssp             H-HHTTTCSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             H-HHHHhCCCHHHHHHHHHHHHHHHHHCCCE
Confidence            1 12234444443 45667778888877644

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=90.77  E-value=6  Score=40.84  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CceEEEEEeccHHHHHHHHHCCCcEEEECc-------CCCce----EEE---EecccCCcchhhhhccccC-Ccc-----
Q psy3862         160 KHVIIAGNVVTGEMVEELILSGADVIKVGI-------GPGSV----CTT---RLKNKTSDFFLIQFYSCIP-QAG-----  219 (671)
Q Consensus       160 ~~~li~g~v~t~e~a~~Li~AGaD~IvVdg-------a~G~~----~~t---~v~~~~~~~~~i~~i~~~p-~aG-----  219 (671)
                      .-.++++...+.=-|+...+.|+|+|++=.       +.|+.    +..   .+.-+.-+ .+++.++.+| .||     
T Consensus        27 ~~~iig~gaGtGlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~-evlp~v~~iPV~Agv~~~D  105 (286)
T 2p10_A           27 GEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAR-EVLPVVRHTPVLAGVNGTD  105 (286)
T ss_dssp             TCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHH-HHGGGCSSSCEEEEECTTC
T ss_pred             CCceEEEecccchhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHH-hhhccCCCCCEEEEECCcC
Confidence            345778788899999999999999999854       22221    010   01100111 3444445556 344     


Q ss_pred             -ccccHHHHHHHHHcCCCEEEEc
Q psy3862         220 -NVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       220 -nV~t~~~a~~li~aGAdgvkVG  241 (671)
                       +.-++.-..++.++|+.|+ +-
T Consensus       106 P~~~~g~~Le~lk~~Gf~Gv-~N  127 (286)
T 2p10_A          106 PFMVMSTFLRELKEIGFAGV-QN  127 (286)
T ss_dssp             TTCCHHHHHHHHHHHTCCEE-EE
T ss_pred             CCcCHHHHHHHHHHhCCceE-EE
Confidence             3346677788889999999 54

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=90.73  E-value=0.64  Score=49.22  Aligned_cols=92  Identities=17%  Similarity=0.127  Sum_probs=49.4

Q ss_pred             HHHHHHHHHCCCcEEEEC---cCCCceEEEEecccCCcchhhhhc-c---ccC-Ccc---ccccHHHHHHHHHcCCCEEE
Q psy3862         171 GEMVEELILSGADVIKVG---IGPGSVCTTRLKNKTSDFFLIQFY-S---CIP-QAG---NVVTGEMVEELILSGADVIK  239 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVd---ga~G~~~~t~v~~~~~~~~~i~~i-~---~~p-~aG---nV~t~~~a~~li~aGAdgvk  239 (671)
                      .+-++.|.++|+|.|-+.   |.+|++.... -....++..+..+ .   ..| .+=   |.++.+.++.+.++|+|+++
T Consensus        33 ~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g-~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~  111 (345)
T 1nvm_A           33 RAIARALDKAKVDSIEVAHGDGLQGSSFNYG-FGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVR  111 (345)
T ss_dssp             HHHHHHHHHHTCSEEECSCTTSTTCCBTTTB-CCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCCCCCCccc-CCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEE
Confidence            366788999999999985   3333220000 0000011111111 1   111 111   45678899999999999999


Q ss_pred             EcccCCCccccceecccCcchhhhHHHHHHHhhhcCCc
Q psy3862         240 VGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGH  277 (671)
Q Consensus       240 VG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~  277 (671)
                      |-..     .+.         ..-..++.++|+++|..
T Consensus       112 I~~~-----~s~---------~~~~~~~i~~ak~~G~~  135 (345)
T 1nvm_A          112 VATH-----CTE---------ADVSKQHIEYARNLGMD  135 (345)
T ss_dssp             EEEE-----TTC---------GGGGHHHHHHHHHHTCE
T ss_pred             EEEe-----ccH---------HHHHHHHHHHHHHCCCE
Confidence            9631     111         12356667777766543

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=90.71  E-value=0.54  Score=48.76  Aligned_cols=83  Identities=28%  Similarity=0.330  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--CccccccH
Q psy3862         148 VDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVTG  224 (671)
Q Consensus       148 ~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t~  224 (671)
                      .+.++..|+.+|...++...+.+.++++.++++|+|+|.+|--.-    +.++      ..++.+. .+|  +.||| |.
T Consensus       183 ~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aGaD~I~ld~~~~----~~~k------~av~~v~~~ipi~AsGGI-t~  251 (286)
T 1x1o_A          183 GEAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNFPL----EALR------EAVRRVGGRVPLEASGNM-TL  251 (286)
T ss_dssp             HHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHTCSEEEEESCCH----HHHH------HHHHHHTTSSCEEEESSC-CH
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCCH----HHHH------HHHHHhCCCCeEEEEcCC-CH
Confidence            445666677777655555577889999999999999997764211    0011      0111221 345  68998 78


Q ss_pred             HHHHHHHHcCCCEEEEc
Q psy3862         225 EMVEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG  241 (671)
                      +.+.++.++|+|++-||
T Consensus       252 eni~~~a~tGvD~IsVg  268 (286)
T 1x1o_A          252 ERAKAAAEAGVDYVSVG  268 (286)
T ss_dssp             HHHHHHHHHTCSEEECT
T ss_pred             HHHHHHHHcCCCEEEEc
Confidence            99999999999999876

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=90.59  E-value=1.4  Score=45.11  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             HHHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHhCCCce-EEE-EE-eccH----HHHHHHHHCCCcEEEECc
Q psy3862         120 AGLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREMYPKHV-IIA-GN-VVTG----EMVEELILSGADVIKVGI  189 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~~P~~~-li~-g~-v~t~----e~a~~Li~AGaD~IvVdg  189 (671)
                      ..+++.+....++--+++|...   |....+.+-++.+++..+... ++- -. -.|.    ...+...++|||+|+..+
T Consensus       115 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTST  194 (260)
T 3r12_A          115 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTST  194 (260)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC
T ss_pred             HHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCC
Confidence            3455666663232234555432   333445555666655543221 111 11 1122    445567789999998876


Q ss_pred             CCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         190 GPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       190 a~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +=+..        ..++..+..+.     .++  ++|||-|.+++.+++++||+  |+|
T Consensus       195 Gf~~~--------GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~--RiG  243 (260)
T 3r12_A          195 GFGTG--------GATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGAD--RIG  243 (260)
T ss_dssp             SSSSC--------CCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCS--EEE
T ss_pred             CCCCC--------CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCc--eee
Confidence            42110        00111111111     133  79999999999999999999  556

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=90.57  E-value=1.5  Score=42.60  Aligned_cols=68  Identities=24%  Similarity=0.300  Sum_probs=40.5

Q ss_pred             HHHHHHHhCCCceEEEeeccCCC-ChH---HHHHHHHHHHhCCCceEEEEEeccH-HHHHHHHHCCCcEEEECcC
Q psy3862         121 GLKEILAALPEIEYICLDVANGY-TQT---FVDFVRRIREMYPKHVIIAGNVVTG-EMVEELILSGADVIKVGIG  190 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~-~~~---~~~~ik~lr~~~P~~~li~g~v~t~-e~a~~Li~AGaD~IvVdga  190 (671)
                      .++.+.+.  +++.+.++...|. ...   -.+.++++++..+....+..-+.+. +.++.+.++|+|.|.+.+.
T Consensus        21 ~~~~~~~~--G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~   93 (220)
T 2fli_A           21 ELARIEET--DAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE   93 (220)
T ss_dssp             HHHHHHHT--TCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGG
T ss_pred             HHHHHHHc--CCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccC
Confidence            34445555  6777777765554 221   1577777776543222333344443 4678999999999987443

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=90.53  E-value=0.14  Score=53.47  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccC--CccccccH
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIP--QAGNVVTG  224 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p--~aGnV~t~  224 (671)
                      ..+.++..++.+|...++.-.+.|.+.++.++++|+|+|.+|...-. ..++..+....-.  +-...+|  +.||| |.
T Consensus       185 i~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~~~~-~l~~~v~~l~~~~--~g~~~v~I~ASGGI-t~  260 (294)
T 3c2e_A          185 ITNAVKNARAVCGFAVKIEVECLSEDEATEAIEAGADVIMLDNFKGD-GLKMCAQSLKNKW--NGKKHFLLECSGGL-NL  260 (294)
T ss_dssp             HHHHHHHHHHHHCTTSCEEEECSSSHHHHHHHHHTCSEEECCC------------------------CCEEEEECCC-CC
T ss_pred             HHHHHHHHHHhcCcCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHH-HHHHHHHHhcccc--cCCCCeEEEEECCC-CH
Confidence            34556666666775334444667778888889999999999873211 1111111110000  0000023  79999 99


Q ss_pred             HHHHHHHHcCCCEEEEc
Q psy3862         225 EMVEELILSGADVIKVG  241 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG  241 (671)
                      +.+.++.++|||++=||
T Consensus       261 ~ni~~~~~~GvD~i~vG  277 (294)
T 3c2e_A          261 DNLEEYLCDDIDIYSTS  277 (294)
T ss_dssp             ------CCCSCSEEECG
T ss_pred             HHHHHHHHcCCCEEEEe
Confidence            99999999999988665

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=90.50  E-value=0.29  Score=47.86  Aligned_cols=95  Identities=18%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEE----CcC--CCceEEEEecccCC
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKV----GIG--PGSVCTTRLKNKTS  204 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvV----dga--~G~~~~t~v~~~~~  204 (671)
                      +++.+++....   ..    +.++++.++. .++.....+.+.++.+.+.|+|+|.+    ++.  +|+.       ...
T Consensus        94 gad~v~l~~~~---~~----~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~-------~~~  158 (227)
T 2tps_A           94 KADGIHIGQED---AN----AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTR-------AVQ  158 (227)
T ss_dssp             TCSEEEECTTS---SC----HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCC-------CCC
T ss_pred             CCCEEEECCCc---cC----HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCC-------Ccc
Confidence            67888774221   11    2333333333 34444566777788888999999986    221  1100       000


Q ss_pred             cchhhhhcc---c-cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         205 DFFLIQFYS---C-IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       205 ~~~~i~~i~---~-~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+..+..+.   . +|  ++|||. .+.+..++++|||||-||
T Consensus       159 ~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vg  200 (227)
T 2tps_A          159 GVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMI  200 (227)
T ss_dssp             TTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEES
T ss_pred             CHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEh
Confidence            111222221   2 56  689998 889999999999999888

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=90.34  E-value=0.42  Score=49.34  Aligned_cols=21  Identities=33%  Similarity=0.135  Sum_probs=18.6

Q ss_pred             cccHHHHHHHHHcCCCEEEEc
Q psy3862         221 VVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG  241 (671)
                      |.+.+||+-+=++||.+|.+=
T Consensus        18 v~~~eqa~iae~aGa~av~~l   38 (291)
T 3o07_A           18 VVTPEQAKIAEKSGACAVMAL   38 (291)
T ss_dssp             ESSHHHHHHHHHHTCSEEEEC
T ss_pred             cCCHHHHHHHHHhCchhhhhc
Confidence            568999999999999999765

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=90.29  E-value=1.1  Score=45.30  Aligned_cols=111  Identities=17%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             HHHcCCeEEEccCCC---HHHHHHHHhcCccccccee-eecccChhhHHHHHHcCCcEEEEccccccccccccccccccc
Q psy3862         352 LAKHGLFTTIHKYYT---LEEWKAFAVQNPDVIKHVA-DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEY  427 (671)
Q Consensus       352 la~~Gglgvihr~~~---~e~~~~~v~~~~~~~~~v~-~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~  427 (671)
                      +.+.|.=|++--..+   ++++.+.++++.  ++.+. .+-.+.++++..+.+.+.+++.+. +..|++-..-..   ..
T Consensus       114 a~~aGadgv~v~d~~~~~~~~~~~~~~~~g--~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~-s~~G~tG~~~~~---~~  187 (262)
T 1rd5_A          114 MKEAGVHGLIVPDLPYVAAHSLWSEAKNNN--LELVLLTTPAIPEDRMKEITKASEGFVYLV-SVNGVTGPRANV---NP  187 (262)
T ss_dssp             HHHTTCCEEECTTCBTTTHHHHHHHHHHTT--CEECEEECTTSCHHHHHHHHHHCCSCEEEE-CSSCCBCTTSCB---CT
T ss_pred             HHHcCCCEEEEcCCChhhHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHhcCCCeEEEe-cCCCCCCCCcCC---Cc
Confidence            555666555544444   444554444321  11111 112233466666666677777776 344543221010   00


Q ss_pred             cccccccccccccC-c-eeeccccCchhH-HHHHHcCCcEEEECc
Q psy3862         428 MFFPLVGDMNSYLG-G-VVDGGCTSPGDV-AKAMGAGADFVMLGG  469 (671)
Q Consensus       428 ~~~~~~~~~~~~~~-~-~i~gG~v~t~~~-a~~l~aGAd~V~vG~  469 (671)
                      .....+..+++... . .+.|| +.+.+. .+++.+|||+|.||.
T Consensus       188 ~~~~~i~~v~~~~~~pI~vgGG-I~~~e~~~~~~~~GAdgvvVGS  231 (262)
T 1rd5_A          188 RVESLIQEVKKVTNKPVAVGFG-ISKPEHVKQIAQWGADGVIIGS  231 (262)
T ss_dssp             HHHHHHHHHHHHCSSCEEEESC-CCSHHHHHHHHHTTCSEEEECH
T ss_pred             hHHHHHHHHHhhcCCeEEEECC-cCCHHHHHHHHHcCCCEEEECh
Confidence            01112333344332 2 34555 564544 556789999999995

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=90.22  E-value=1.1  Score=47.70  Aligned_cols=138  Identities=22%  Similarity=0.269  Sum_probs=91.9

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      +++..+.++  +.+.+=+...   ...-.+.++.+++..| .++++=--.+...|...+++|+|.+.+.           
T Consensus        50 ~Qi~~l~~a--G~diVRvavp---~~~~a~al~~I~~~~~-vPlvaDiHf~~~lal~a~e~G~dklRIN-----------  112 (366)
T 3noy_A           50 NQIKRLYEA--GCEIVRVAVP---HKEDVEALEEIVKKSP-MPVIADIHFAPSYAFLSMEKGVHGIRIN-----------  112 (366)
T ss_dssp             HHHHHHHHT--TCCEEEEECC---SHHHHHHHHHHHHHCS-SCEEEECCSCHHHHHHHHHTTCSEEEEC-----------
T ss_pred             HHHHHHHHc--CCCEEEeCCC---ChHHHHHHHHHHhcCC-CCEEEeCCCCHHHHHHHHHhCCCeEEEC-----------
Confidence            466677777  6676654322   2445677888877764 3455533478889999999999999662           


Q ss_pred             cccCCcchhhhhccccCCccccccHHHHHHHHHcCCC---EEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCC
Q psy3862         200 KNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGAD---VIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGG  276 (671)
Q Consensus       200 ~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAd---gvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~  276 (671)
                                        -||+++.+..+.++++=.+   .+|||+..||.- .+...--|.|...|..|.|..--    
T Consensus       113 ------------------PGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~-~~ll~~yg~~~~eamVeSAl~~~----  169 (366)
T 3noy_A          113 ------------------PGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLE-KDLLEKYGYPSAEALAESALRWS----  169 (366)
T ss_dssp             ------------------HHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCC-HHHHHHHSSCCHHHHHHHHHHHH----
T ss_pred             ------------------CcccCchhHHHHHHHHHHHcCCCEEEecCCcCCC-HHHHHhcCCCCHHHHHHHHHHHH----
Confidence                              4788877777666654333   789999999975 45556667676666666542211    


Q ss_pred             cchhhhhhccceeeccccCCCceeeeecCCCccC
Q psy3862         277 HIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLK  310 (671)
Q Consensus       277 ~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~  310 (671)
                                   +.-..++|+|+.|=.|-|++.
T Consensus       170 -------------~~~e~~gf~~iviS~K~S~v~  190 (366)
T 3noy_A          170 -------------EKFEKWGFTNYKVSIKGSDVL  190 (366)
T ss_dssp             -------------HHHHHTTCCCEEEEEECSSHH
T ss_pred             -------------HHHHhCCCCeEEEeeecCChH
Confidence                         112357899999888877554

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=90.18  E-value=0.59  Score=47.21  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=61.1

Q ss_pred             HHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862         125 ILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS  204 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~  204 (671)
                      ..++  +++.+++...  ......+.++.+++..-..........+.++++.+.+.+.+++.+.+..|+.-   .++.++
T Consensus       114 a~~a--Gadgv~v~d~--~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG---~~~~~~  186 (262)
T 1rd5_A          114 MKEA--GVHGLIVPDL--PYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTG---PRANVN  186 (262)
T ss_dssp             HHHT--TCCEEECTTC--BTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBC---TTSCBC
T ss_pred             HHHc--CCCEEEEcCC--ChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCC---CCcCCC
Confidence            5555  7786665322  12333444444444321111122222346777777777777776655444210   111111


Q ss_pred             --cchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         205 --DFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       205 --~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                        .+..+..+.   .+|  +.|||.|.+.+..++++|||++-||
T Consensus       187 ~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG  230 (262)
T 1rd5_A          187 PRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG  230 (262)
T ss_dssp             THHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred             chHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence              112333332   356  7999999999999999999999999

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=89.92  E-value=0.44  Score=48.99  Aligned_cols=90  Identities=20%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             CcccceeeeeeccCCceeeCcceEecC-CCCCCCHHHHHHH--HHcCCeE-----------------------EEc----
Q psy3862         313 SEVDITRTFTFRNSGKTYQGVPIIAAN-MDTVGTFEMAKHL--AKHGLFT-----------------------TIH----  362 (671)
Q Consensus       313 ~eVdl~~~l~~~~s~~~~~~iPiIaa~-MDtV~~~~mA~~l--a~~Gglg-----------------------vih----  362 (671)
                      +++||+++|-     .+.+.-||+-|+ ||..++ ++...+  ..+|.+.                       .++    
T Consensus         3 ~~~~l~~~~~-----g~~l~npi~~aag~~~~~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~   76 (311)
T 1ep3_A            3 ENNRLSVKLP-----GLDLKNPIIPASGCFGFGE-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL   76 (311)
T ss_dssp             CCTTTCEEET-----TEEESSSEEECTTSSTTST-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred             CCCccceEEC-----CEECCCCcEECCCCCCCCH-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCC
Confidence            7899999885     688999999999 999876 454444  3445442                       134    


Q ss_pred             cCCCHHHHHHH----Hhc-CcccccceeeecccChhhHHH---HHH--cCCcEEEEc
Q psy3862         363 KYYTLEEWKAF----AVQ-NPDVIKHVADGGCTSPGDVAK---AMG--AGADFVMLG  409 (671)
Q Consensus       363 r~~~~e~~~~~----v~~-~~~~~~~v~~~~~~~~~~~~~---l~~--aG~d~i~id  409 (671)
                      .|.+++++.+.    +++ .++ .+...-.++...+++.+   .++  +|+|.|-|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~  132 (311)
T 1ep3_A           77 QNPGLEVIMTEKLPWLNENFPE-LPIIANVAGSEEADYVAVCAKIGDAANVKAIELN  132 (311)
T ss_dssp             CBCCHHHHHHTHHHHHHHHCTT-SCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhcCCC-CcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEe
Confidence            35677777543    332 222 11122222334455433   344  899999885

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=89.89  E-value=0.19  Score=51.74  Aligned_cols=134  Identities=16%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             eCcceEe----cCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCccc-ccceee-ecccChhhHHHHHHcCCc
Q psy3862         331 QGVPIIA----ANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDV-IKHVAD-GGCTSPGDVAKAMGAGAD  404 (671)
Q Consensus       331 ~~iPiIa----a~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~-~~~v~~-~~~~~~~~~~~l~~aG~d  404 (671)
                      .++||+-    .+++..+..+++..+...|.=|+|---.++|+..+++...++. +..+.- +-.+++++++.+.+.+..
T Consensus        90 ~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~g  169 (271)
T 1ujp_A           90 TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATG  169 (271)
T ss_dssp             CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCS
T ss_pred             CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCC
Confidence            4688887    2255556678899999999998988766666554444332211 111211 122446777887776666


Q ss_pred             EEEEccccccccccccccccccccccccccccccccC-ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         405 FVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       405 ~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      |+.+. +..|++-..-..   .......++.+|++.. .++.||-+.+.+.++.+ .|||+|.||.
T Consensus       170 fiy~v-s~~G~TG~~~~~---~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-~~ADgVIVGS  230 (271)
T 1ujp_A          170 FVYAV-SVTGVTGMRERL---PEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-AVADGVVVGS  230 (271)
T ss_dssp             CEEEE-CC---------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-TTSSEEEECH
T ss_pred             CEEEE-ecCcccCCCCCC---CccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-cCCCEEEECh
Confidence            77665 444443111100   0011112344555543 26677778888888878 9999999994

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=89.83  E-value=0.83  Score=46.87  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=63.8

Q ss_pred             HHHHHHHhCCCceEE-EeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc-CCCceEEEE
Q psy3862         121 GLKEILAALPEIEYI-CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI-GPGSVCTTR  198 (671)
Q Consensus       121 rl~~l~~a~~~~d~I-vld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg-a~G~~~~t~  198 (671)
                      .+++..++  +++.+ +.|...+....+.+.+++   ..-....++.-..+.++++.+.+.+-++|-.=+ .+.+...+.
T Consensus       115 f~~~~~~a--Gvdgvii~Dlp~ee~~~~~~~~~~---~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~  189 (267)
T 3vnd_A          115 FYTKAQAA--GVDSVLIADVPVEESAPFSKAAKA---HGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESK  189 (267)
T ss_dssp             HHHHHHHH--TCCEEEETTSCGGGCHHHHHHHHH---TTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC-----
T ss_pred             HHHHHHHc--CCCEEEeCCCCHhhHHHHHHHHHH---cCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccC
Confidence            45666677  78874 445444444444444443   221112233223457899988888766765533 332322111


Q ss_pred             ecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         199 LKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       199 v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ....  -...+..++   .+|  ++|||.|.++++.++.+||||+-||
T Consensus       190 ~~~~--~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVG  235 (267)
T 3vnd_A          190 AGEP--IENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISG  235 (267)
T ss_dssp             ---C--HHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CcHH--HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            1100  011222221   356  7999999999999999999999999

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=89.66  E-value=1.8  Score=44.53  Aligned_cols=103  Identities=16%  Similarity=-0.009  Sum_probs=53.9

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccCCccccccHHHHHHHHHcCCCEEEEcccCCCcc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVC  248 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~  248 (671)
                      +-+++|.++|++.|.+.+ ..+.  +.+.........+..+.   .+|++.-+.+.++++.++++|++.|++-+ ++|--
T Consensus        30 ~i~~~L~~~Gv~~IE~g~-~~~~--~~~p~~~~~~e~~~~i~~~~~~~v~~l~~n~~~i~~a~~~G~~~V~i~~-~~S~~  105 (295)
T 1ydn_A           30 ALINRLSDCGYARIEATS-FVSP--KWVPQLADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEIAVFI-SASEG  105 (295)
T ss_dssp             HHHHHHTTTTCSEEEEEE-CSCT--TTCGGGTTHHHHHHHSCCCSSSEEEEECSSHHHHHHHHHTTCSEEEEEE-ESCHH
T ss_pred             HHHHHHHHcCcCEEEEcc-CcCc--cccccccCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHCCCCEEEEEE-ecCHH
Confidence            446778889999997743 1111  00000000111212221   12332223568999999999999998864 33411


Q ss_pred             ccceecccCcc-hhhhHHHHHHHhhhcCCcc
Q psy3862         249 TTRLKTGVGYP-QFSAVLECADAAHGLGGHI  278 (671)
Q Consensus       249 ~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~~~  278 (671)
                      -.+......+. .+..+.++.+.|+++|.++
T Consensus       106 h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V  136 (295)
T 1ydn_A          106 FSKANINCTIAESIERLSPVIGAAINDGLAI  136 (295)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence            11112222233 3455677788888876543

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=89.57  E-value=1.8  Score=45.77  Aligned_cols=113  Identities=24%  Similarity=0.350  Sum_probs=67.1

Q ss_pred             HHHhCCCceEEEeeccCCCC--------------------h----HHHHHHHHHHHhC----CCceEEEEE-----ecc-
Q psy3862         125 ILAALPEIEYICLDVANGYT--------------------Q----TFVDFVRRIREMY----PKHVIIAGN-----VVT-  170 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~--------------------~----~~~~~ik~lr~~~----P~~~li~g~-----v~t-  170 (671)
                      ..++  +.|.|-++.+||+.                    +    -..+.++.+|+..    |...++-..     ..+ 
T Consensus       161 a~~a--GfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~  238 (349)
T 3hgj_A          161 ALRA--GFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSL  238 (349)
T ss_dssp             HHHT--TCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCH
T ss_pred             HHHc--CCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCH
Confidence            3444  78888888888652                    1    1345666666643    444445432     112 


Q ss_pred             ---HHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEE
Q psy3862         171 ---GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIK  239 (671)
Q Consensus       171 ---~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-Adgvk  239 (671)
                         .+.++.|.++|+|+|.+-.+ +......+ ...+  .+..+..++   .+|  ..|++-|.+.+..+++.| ||.|-
T Consensus       239 ~~~~~la~~L~~~Gvd~i~vs~g-~~~~~~~~-~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~  316 (349)
T 3hgj_A          239 EDTLAFARRLKELGVDLLDCSSG-GVVLRVRI-PLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVL  316 (349)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECC-CSCSSSCC-CCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecC-CcCccccc-CCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEE
Confidence               35588899999999987431 11000000 0011  122222232   356  689999999999999999 99997


Q ss_pred             Ec
Q psy3862         240 VG  241 (671)
Q Consensus       240 VG  241 (671)
                      +|
T Consensus       317 iG  318 (349)
T 3hgj_A          317 LG  318 (349)
T ss_dssp             ES
T ss_pred             ec
Confidence            76

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=88.86  E-value=1.7  Score=45.15  Aligned_cols=47  Identities=11%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             HHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchh
Q psy3862         226 MVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIIS  280 (671)
Q Consensus       226 ~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~  280 (671)
                      .+++++++|||+|.+=+-.||--        -.-++..+.++.++|+++|.++|.
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs~~--------~~~~l~~i~~v~~~a~~~GlpvIi  176 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGSEY--------EHQSIKNIIQLVDAGMKVGMPTMA  176 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTT--------HHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHCCCCEEEEEEECCCCc--------HHHHHHHHHHHHHHHHHcCCEEEE
Confidence            46778899999998877666321        123666777888888877655444

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=88.65  E-value=1.7  Score=46.22  Aligned_cols=113  Identities=21%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             HHHhCCCceEEEeeccCCCC--------------------hH----HHHHHHHHHHh----CCCceEEEEEe------cc
Q psy3862         125 ILAALPEIEYICLDVANGYT--------------------QT----FVDFVRRIREM----YPKHVIIAGNV------VT  170 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~--------------------~~----~~~~ik~lr~~----~P~~~li~g~v------~t  170 (671)
                      ..++  +.|.|-++.+||+.                    ++    ..+.++.+|+.    +|...++...-      .+
T Consensus       167 a~~a--GfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~  244 (363)
T 3l5l_A          167 ARDA--GFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQT  244 (363)
T ss_dssp             HHHH--TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHH
T ss_pred             HHHc--CCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCC
Confidence            4455  77888888888752                    11    34556666654    34455565431      11


Q ss_pred             ----HHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEE
Q psy3862         171 ----GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVI  238 (671)
Q Consensus       171 ----~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-Adgv  238 (671)
                          .+.++.|.++|+|+|.+-.+.-.. .... ...+  .++.+..++   .+|  ..|+|-|.+.+..+++.| ||.|
T Consensus       245 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~-~~~~-~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V  322 (363)
T 3l5l_A          245 LEESIELARRFKAGGLDLLSVSVGFTIP-DTNI-PWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLV  322 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCSS-CCCC-CCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCcccc-cccc-CCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEE
Confidence                355888999999999774321000 0000 0011  122222332   356  689999999999999999 9999


Q ss_pred             EEc
Q psy3862         239 KVG  241 (671)
Q Consensus       239 kVG  241 (671)
                      -+|
T Consensus       323 ~iG  325 (363)
T 3l5l_A          323 SVG  325 (363)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            666

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=88.52  E-value=1.3  Score=44.76  Aligned_cols=69  Identities=23%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             ccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceee
Q psy3862         222 VTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVM  301 (671)
Q Consensus       222 ~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVl  301 (671)
                      .|.+.+++|.++|||.+-+|+   |       .|+-   ...+.+..++.++..++||-|--..     +.. ..-=|.+
T Consensus        21 ~t~~~~~~l~~~GaD~ielG~---S-------~Gvt---~~~~~~~v~~ir~~~~Pivlm~y~~-----n~i-~~G~dg~   81 (240)
T 1viz_A           21 LPDEQLEILCESGTDAVIIGG---S-------DGVT---EDNVLRMMSKVRRFLVPCVLEVSAI-----EAI-VPGFDLY   81 (240)
T ss_dssp             CCHHHHHHHHTSCCSEEEECC--------------C---HHHHHHHHHHHTTSSSCEEEECSCG-----GGC-CSCCSEE
T ss_pred             ccHHHHHHHHHcCCCEEEECC---C-------CCCC---HHHHHHHHHHhhCcCCCEEEecCcc-----ccc-cCCCCEE
Confidence            356678899999999999997   2       2222   2335566555555677887522210     111 1233577


Q ss_pred             eecCCCcc
Q psy3862         302 LRPKRSTL  309 (671)
Q Consensus       302 l~P~rst~  309 (671)
                      |+|.-..-
T Consensus        82 iiPdLp~e   89 (240)
T 1viz_A           82 FIPSVLNS   89 (240)
T ss_dssp             EEEEETTB
T ss_pred             EEcccCcc
Confidence            77765443

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=88.06  E-value=0.79  Score=47.54  Aligned_cols=83  Identities=17%  Similarity=0.304  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      +.+.++..|+..|...+.+ -+.|.++++.++++|+|+|.+|.-.-.    .+++      .++.+. .++  +.||| |
T Consensus       185 i~~Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn~~~~----~l~~------av~~~~~~v~ieaSGGI-t  252 (287)
T 3tqv_A          185 IAKAVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDNFSGE----DIDI------AVSIARGKVALEVSGNI-D  252 (287)
T ss_dssp             HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESCCHH----HHHH------HHHHHTTTCEEEEESSC-C
T ss_pred             HHHHHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcCCCHH----HHHH------HHHhhcCCceEEEECCC-C
Confidence            4566676666666544444 678889999999999999988652110    0110      011111 122  78998 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.++.++|+|.+-||
T Consensus       253 ~~~i~~~a~tGVD~IsvG  270 (287)
T 3tqv_A          253 RNSIVAIAKTGVDFISVG  270 (287)
T ss_dssp             TTTHHHHHTTTCSEEECS
T ss_pred             HHHHHHHHHcCCCEEEEC
Confidence            889999999999999887

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=87.96  E-value=2.1  Score=45.09  Aligned_cols=113  Identities=19%  Similarity=0.321  Sum_probs=69.6

Q ss_pred             HHHHhCCCceEEEeeccCCCC------------------------hHHHHHHHHHHHh--CCCceEEEEEe-----c---
Q psy3862         124 EILAALPEIEYICLDVANGYT------------------------QTFVDFVRRIREM--YPKHVIIAGNV-----V---  169 (671)
Q Consensus       124 ~l~~a~~~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~--~P~~~li~g~v-----~---  169 (671)
                      .+.++  +.|.|-++.+||+.                        +-..+.++.+++.  +|...++...-     .   
T Consensus       152 ~a~~a--GfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~  229 (338)
T 1z41_A          152 RAKEA--GFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIA  229 (338)
T ss_dssp             HHHHT--TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHH
T ss_pred             HHHHc--CCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHH
Confidence            34455  77888888777641                        1135556666664  56666665421     1   


Q ss_pred             -cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC--cchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEE
Q psy3862         170 -TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS--DFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKV  240 (671)
Q Consensus       170 -t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~--~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkV  240 (671)
                       ..+.++.|.++|+|+|.+-...-..  ... ...+  .+..+..++   .+|  ..|+|-|.+.+..+++.| ||.|-+
T Consensus       230 ~~~~~a~~l~~~Gvd~i~v~~~~~~~--~~~-~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i  306 (338)
T 1z41_A          230 DHIGFAKWMKEQGVDLIDCSSGALVH--ADI-NVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI  306 (338)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCCSSC--CCC-CCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEecCcccc--CCC-CCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence             2367888999999999874321100  000 0011  122333332   356  689999999999999999 999987


Q ss_pred             c
Q psy3862         241 G  241 (671)
Q Consensus       241 G  241 (671)
                      |
T Consensus       307 G  307 (338)
T 1z41_A          307 G  307 (338)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=87.88  E-value=0.41  Score=50.42  Aligned_cols=83  Identities=22%  Similarity=0.290  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc-cccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY-SCIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i-~~~p--~aGnV~t  223 (671)
                      +.+.++..++.+|.. ++.--+.|.+.++.++++|+|+|.+|...-.    .+++      .+..+ ..++  +.||| |
T Consensus       218 i~~Av~~ar~~~p~~-kIeVEVdtldea~eAl~aGaD~I~LDn~~~~----~l~~------av~~l~~~v~ieaSGGI-t  285 (320)
T 3paj_A          218 IRQAISTAKQLNPGK-PVEVETETLAELEEAISAGADIIMLDNFSLE----MMRE------AVKINAGRAALENSGNI-T  285 (320)
T ss_dssp             HHHHHHHHHHHSTTS-CEEEEESSHHHHHHHHHTTCSEEEEESCCHH----HHHH------HHHHHTTSSEEEEESSC-C
T ss_pred             HHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhCCCCeEEEECCC-C
Confidence            456677777778875 3334678889999999999999998863210    0110      01111 1122  68888 7


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++++.++|+|.+-||
T Consensus       286 ~~~I~~~a~tGVD~isvG  303 (320)
T 3paj_A          286 LDNLKECAETGVDYISVG  303 (320)
T ss_dssp             HHHHHHHHTTTCSEEECT
T ss_pred             HHHHHHHHHcCCCEEEEC
Confidence            899999999999999777

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=87.57  E-value=2.2  Score=44.79  Aligned_cols=68  Identities=15%  Similarity=0.192  Sum_probs=35.7

Q ss_pred             HHHcCCcEEEEccccccccccccccccccccccccccccccccC-ceeeccccCchhHHH-HHHcC-CcEEEECc
Q psy3862         398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAG-ADFVMLGG  469 (671)
Q Consensus       398 l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aG-Ad~V~vG~  469 (671)
                      +.++|+|+|.+-+..........    ......+.+..+|+... .++..|.+.+.+.+. +++.| ||.|++|.
T Consensus       238 l~~~Gvd~i~v~~~~~~~~~~~~----~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR  308 (338)
T 1z41_A          238 MKEQGVDLIDCSSGALVHADINV----FPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGR  308 (338)
T ss_dssp             HHHTTCCEEEEECCCSSCCCCCC----CTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECH
T ss_pred             HHHcCCCEEEEecCccccCCCCC----CccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecH
Confidence            35689999997522110000000    00011122333444332 255566666666665 68888 99999985

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=87.24  E-value=0.91  Score=46.21  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             HHHHHHHHhCCCceEE-EeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEE
Q psy3862         120 AGLKEILAALPEIEYI-CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR  198 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~I-vld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~  198 (671)
                      ..++...++  +++.+ +.|...+....+.+.+   ++.......+..-..+.++++.+.+.+.+++-+.+-.|..   -
T Consensus       113 ~~~~~~~~a--Gadgii~~d~~~e~~~~~~~~~---~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~t---G  184 (268)
T 1qop_A          113 AFYARCEQV--GVDSVLVADVPVEESAPFRQAA---LRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT---G  184 (268)
T ss_dssp             HHHHHHHHH--TCCEEEETTCCGGGCHHHHHHH---HHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCC---C
T ss_pred             HHHHHHHHc--CCCEEEEcCCCHHHHHHHHHHH---HHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcC---C
Confidence            345666677  77854 4444433333444443   3332111112212234678888777766666443422321   0


Q ss_pred             ecccC-C-cchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         199 LKNKT-S-DFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       199 v~~~~-~-~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ....+ + ....+..++   .+|  +.|||.|.++++.++.+|||++-||
T Consensus       185 ~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG  234 (268)
T 1qop_A          185 AENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG  234 (268)
T ss_dssp             SSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            00001 1 112233332   356  7999999999999999999999999

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=87.21  E-value=2.2  Score=41.29  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +++|| +...++.+++++|||+|.||.
T Consensus       174 ~v~GG-I~~~~~~~~~~~Gad~vvvGs  199 (220)
T 2fli_A          174 EVDGG-VDNKTIRACYEAGANVFVAGS  199 (220)
T ss_dssp             EEESS-CCTTTHHHHHHHTCCEEEESH
T ss_pred             EEECc-CCHHHHHHHHHcCCCEEEECh
Confidence            45677 467788788899999999985

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=87.06  E-value=2.1  Score=43.08  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=32.9

Q ss_pred             ccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhh
Q psy3862         222 VTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISF  281 (671)
Q Consensus       222 ~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~  281 (671)
                      .|.+.++++.++|||.|-+|+   |       .|+   ....+.+..+..++...+||-|
T Consensus        21 ~t~~~~~~l~~~GaD~IelG~---S-------~g~---t~~~~~~~v~~ir~~~~Pivl~   67 (234)
T 2f6u_A           21 NTDEIIKAVADSGTDAVMISG---T-------QNV---TYEKARTLIEKVSQYGLPIVVE   67 (234)
T ss_dssp             CCHHHHHHHHTTTCSEEEECC---C-------TTC---CHHHHHHHHHHHTTSCCCEEEC
T ss_pred             ccHHHHHHHHHcCCCEEEECC---C-------CCC---CHHHHHHHHHHhcCCCCCEEEe
Confidence            356678899999999999998   2       222   1345666666666667888773

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=86.77  E-value=1  Score=46.52  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=18.6

Q ss_pred             eeeccccCch-hHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPG-DVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~-~~a~~l~aGAd~V~vG~  469 (671)
                      +..|| +.++ ++.+.+.+|||.|++|.
T Consensus       246 i~~GG-I~~~~da~~~l~~GAd~V~vg~  272 (311)
T 1jub_A          246 IGTGG-IETGQDAFEHLLCGATMLQIGT  272 (311)
T ss_dssp             EEESS-CCSHHHHHHHHHHTCSEEEECH
T ss_pred             EEECC-CCCHHHHHHHHHcCCCEEEEch
Confidence            34555 5555 55557899999999985

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=86.66  E-value=1.2  Score=44.78  Aligned_cols=77  Identities=19%  Similarity=0.296  Sum_probs=50.4

Q ss_pred             HHHHHHHHHCCCcEEE-ECc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         171 GEMVEELILSGADVIK-VGI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       171 ~e~a~~Li~AGaD~Iv-Vdg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      .+.|+...+.|+|-+. +|-  +..        .+.+.+.++..+.   .+|  ++|||-+-+.++.++++|||-|-+| 
T Consensus        34 ~~~a~~~~~~gad~lhvvDld~a~~--------~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~-  104 (243)
T 4gj1_A           34 LKKFKEYEKAGAKELHLVDLTGAKD--------PSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIG-  104 (243)
T ss_dssp             HHHHHHHHHHTCCEEEEEEHHHHHC--------GGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEEC-
T ss_pred             HHHHHHHHHCCCCEEEEEecCcccc--------cchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEc-
Confidence            3678888899999663 222  110        1112344444442   246  7999999999999999999988777 


Q ss_pred             cCCCccccceecccCcchhhhHHHHH
Q psy3862         243 GPGSVCTTRLKTGVGYPQFSAVLECA  268 (671)
Q Consensus       243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~  268 (671)
                                -..+-.|.+  +.|++
T Consensus       105 ----------t~a~~~p~l--i~e~~  118 (243)
T 4gj1_A          105 ----------SMAIKDATL--CLEIL  118 (243)
T ss_dssp             ----------TTTTTCHHH--HHHHH
T ss_pred             ----------cccccCCch--HHHHH
Confidence                      344556765  34444

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=86.63  E-value=0.12  Score=53.54  Aligned_cols=84  Identities=20%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----ccC--Cccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----CIP--QAGN  220 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~~p--~aGn  220 (671)
                      +.+.++..|+.+|...++..-+.|.++++.++++|+|+|.+|--.-    ..++      ..++.+.    .+|  +.||
T Consensus       179 i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~aGaD~I~LDn~~~----e~l~------~av~~l~~~~~~v~ieASGG  248 (285)
T 1o4u_A          179 AERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSP----EEVK------DISRRIKDINPNVIVEVSGG  248 (285)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESCCH----HHHH------HHHHHHHHHCTTSEEEEEEC
T ss_pred             HHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCCH----HHHH------HHHHHhhccCCCceEEEECC
Confidence            4556666666677644455567789999999999999998875211    0011      0111111    233  6999


Q ss_pred             cccHHHHHHHHHcCCCEEEEc
Q psy3862         221 VVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG  241 (671)
                      | |.+.+.++.++|+|++-||
T Consensus       249 I-t~eni~~~a~tGVD~IsvG  268 (285)
T 1o4u_A          249 I-TEENVSLYDFETVDVISSS  268 (285)
T ss_dssp             C-CTTTGGGGCCTTCCEEEEG
T ss_pred             C-CHHHHHHHHHcCCCEEEEe
Confidence            9 7889999999999999888

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=86.61  E-value=0.64  Score=46.36  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=61.8

Q ss_pred             HHHHHHHHhCCCceE--EEeeccC---CCChHHHHHHHHHHHhCCC-ceE-EEEE-eccH----HHHHHHHHCCCcEEEE
Q psy3862         120 AGLKEILAALPEIEY--ICLDVAN---GYTQTFVDFVRRIREMYPK-HVI-IAGN-VVTG----EMVEELILSGADVIKV  187 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~--Ivld~a~---G~~~~~~~~ik~lr~~~P~-~~l-i~g~-v~t~----e~a~~Li~AGaD~IvV  187 (671)
                      ..+++.+..  +++.  ++++...   ++...+.+-++.+++..+. ..+ |.-. ..+.    ..++...++|||+|+.
T Consensus        75 ~e~~~Ai~~--GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKT  152 (220)
T 1ub3_A           75 LEAALACAR--GADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKT  152 (220)
T ss_dssp             HHHHHHHHT--TCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             HHHHHHHHc--CCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence            345566666  5554  3444331   3334455555555554322 222 2211 1233    4566778899999998


Q ss_pred             CcCCCc-eEEEEecccCCcchhhh-hcc-ccC--CccccccHHHHHHHHHcCCCEEEEccc
Q psy3862         188 GIGPGS-VCTTRLKNKTSDFFLIQ-FYS-CIP--QAGNVVTGEMVEELILSGADVIKVGIG  243 (671)
Q Consensus       188 dga~G~-~~~t~v~~~~~~~~~i~-~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~  243 (671)
                      ..+-+. ..+-      .++.+.. .+. .+|  ++||+-|.+++.+++++||+  |+|..
T Consensus       153 sTGf~~~gat~------~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~--RiG~S  205 (220)
T 1ub3_A          153 STGFGPRGASL------EDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGAS--RLGTS  205 (220)
T ss_dssp             CCSSSSCCCCH------HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS--EEEET
T ss_pred             CCCCCCCCCCH------HHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCc--ccchh
Confidence            763221 0000      0111100 011 234  79999999999999999999  77743

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=86.61  E-value=0.77  Score=46.17  Aligned_cols=110  Identities=17%  Similarity=0.241  Sum_probs=60.7

Q ss_pred             HHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHhCCCce-E-EE--EEe---ccH----HHHHHHHHCCCcEEE
Q psy3862         121 GLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREMYPKHV-I-IA--GNV---VTG----EMVEELILSGADVIK  186 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~~P~~~-l-i~--g~v---~t~----e~a~~Li~AGaD~Iv  186 (671)
                      .+++.+....++--+++|...   |....+.+-++.+++..+... + |-  +-.   .|.    ...+...++|+|+|+
T Consensus        85 E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVK  164 (231)
T 3ndo_A           85 EAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVK  164 (231)
T ss_dssp             HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEE
Confidence            455666663232234555432   444555556666665543221 1 11  111   133    334566789999999


Q ss_pred             ECcCC---CceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         187 VGIGP---GSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       187 Vdga~---G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      ...+=   |..          ++.-+..+.     .++  ++|||-|.+++++++++||+  |+|.
T Consensus       165 TSTGf~~~~gA----------t~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~--RiGt  218 (231)
T 3ndo_A          165 TSTGFHPSGGA----------SVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGAT--RLGL  218 (231)
T ss_dssp             CCCSCCTTCSC----------CHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCS--EEEE
T ss_pred             cCCCCCCCCCC----------CHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcch--hccc
Confidence            87632   211          111111111     133  79999999999999999999  5563

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=86.37  E-value=1.2  Score=46.55  Aligned_cols=83  Identities=23%  Similarity=0.245  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      +.+.+++.|+..|.. ++---+.|.+.++.++++|+|+|-+|--.-.    .+++      .++++. .+.  +.||| |
T Consensus       194 i~~Av~~ar~~~p~~-kIeVEv~tl~e~~eAl~aGaDiImLDn~s~~----~l~~------av~~~~~~v~leaSGGI-t  261 (300)
T 3l0g_A          194 ITLAIQRLRKNLKNE-YIAIECDNISQVEESLSNNVDMILLDNMSIS----EIKK------AVDIVNGKSVLEVSGCV-N  261 (300)
T ss_dssp             HHHHHHHHHHHSSSC-CEEEEESSHHHHHHHHHTTCSEEEEESCCHH----HHHH------HHHHHTTSSEEEEESSC-C
T ss_pred             HHHHHHHHHHhCCCC-CEEEEECCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHhhcCceEEEEECCC-C
Confidence            456677777666754 3444667889999999999999988641100    0100      011111 112  68998 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.++++.++|+|.+-+|
T Consensus       262 ~~~i~~~A~tGVD~IsvG  279 (300)
T 3l0g_A          262 IRNVRNIALTGVDYISIG  279 (300)
T ss_dssp             TTTHHHHHTTTCSEEECG
T ss_pred             HHHHHHHHHcCCCEEEeC
Confidence            889999999999999888

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=85.89  E-value=0.48  Score=49.09  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=18.2

Q ss_pred             eeccccCch-hHHHHHHcCCcEEEECc
Q psy3862         444 VDGGCTSPG-DVAKAMGAGADFVMLGG  469 (671)
Q Consensus       444 i~gG~v~t~-~~a~~l~aGAd~V~vG~  469 (671)
                      ..|| +.++ ++.+.+.+|||.|++|.
T Consensus       249 ~~GG-I~~~~da~~~l~~GAd~V~ig~  274 (314)
T 2e6f_A          249 GCGG-VYSGEDAFLHILAGASMVQVGT  274 (314)
T ss_dssp             EESS-CCSHHHHHHHHHHTCSSEEECH
T ss_pred             EECC-CCCHHHHHHHHHcCCCEEEEch
Confidence            3555 5555 55557899999999985

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=85.89  E-value=0.81  Score=46.09  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             HHHHHHHHCCCcEEEECcCCC--ceEEEEecccCCcchh---hhhccccC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         172 EMVEELILSGADVIKVGIGPG--SVCTTRLKNKTSDFFL---IQFYSCIP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G--~~~~t~v~~~~~~~~~---i~~i~~~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      ..++...++|||+|+...+-+  ...+      ..+..+   .+.+. +|  ++||+-|.+.+.+++++||+  |+|.
T Consensus       152 ~a~ria~eaGADfVKTsTG~~~~~gAt------~~dv~l~~m~~~v~-v~VKaaGGirt~~~al~~i~aGa~--RiG~  220 (234)
T 1n7k_A          152 LLVDSSRRAGADIVKTSTGVYTKGGDP------VTVFRLASLAKPLG-MGVKASGGIRSGIDAVLAVGAGAD--IIGT  220 (234)
T ss_dssp             HHHHHHHHTTCSEEESCCSSSCCCCSH------HHHHHHHHHHGGGT-CEEEEESSCCSHHHHHHHHHTTCS--EEEE
T ss_pred             HHHHHHHHhCCCEEEeCCCCCCCCCCC------HHHHHHHHHHHHHC-CCEEEecCCCCHHHHHHHHHcCcc--ccch
Confidence            356677889999999875321  1100      001111   11122 45  79999999999999999999  7774

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=85.84  E-value=0.29  Score=51.03  Aligned_cols=83  Identities=13%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-ccC--Ccccccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-CIP--QAGNVVT  223 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-~~p--~aGnV~t  223 (671)
                      +.+.++..++..|.. ++---+.|.+.++.++++|+|+|.+|...-.    .+++      .+..+. .++  +.||| |
T Consensus       196 i~~Av~~~r~~~p~~-~ieVEvdtlde~~eAl~aGaD~I~LDn~~~~----~l~~------av~~i~~~v~ieaSGGI-~  263 (298)
T 3gnn_A          196 VGEALDAAFALNAEV-PVQIEVETLDQLRTALAHGARSVLLDNFTLD----MMRD------AVRVTEGRAVLEVSGGV-N  263 (298)
T ss_dssp             HHHHHHHHHHHC--C-CCEEEESSHHHHHHHHHTTCEEEEEESCCHH----HHHH------HHHHHTTSEEEEEESSC-S
T ss_pred             HHHHHHHHHHhCCCC-CEEEEeCCHHHHHHHHHcCCCEEEECCCCHH----HHHH------HHHHhCCCCeEEEEcCC-C
Confidence            456677777777753 3333467889999999999999988752210    0110      011111 112  78998 8


Q ss_pred             HHHHHHHHHcCCCEEEEc
Q psy3862         224 GEMVEELILSGADVIKVG  241 (671)
Q Consensus       224 ~~~a~~li~aGAdgvkVG  241 (671)
                      .+.+.++.++|+|.+-||
T Consensus       264 ~~~i~~~a~tGVD~isvG  281 (298)
T 3gnn_A          264 FDTVRAIAETGVDRISIG  281 (298)
T ss_dssp             TTTHHHHHHTTCSEEECG
T ss_pred             HHHHHHHHHcCCCEEEEC
Confidence            888999999999999888

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=85.75  E-value=0.34  Score=50.23  Aligned_cols=83  Identities=17%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----ccC--Cccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----CIP--QAGN  220 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~~p--~aGn  220 (671)
                      ..+.++..|+.+|.. ++..-+.+.++++.++++|+|+|.+|--.-.    .++      ..++.+.    .++  ++||
T Consensus       181 i~~av~~ar~~~~~~-~I~Vev~t~eea~eal~aGaD~I~LDn~~~~----~~~------~~v~~l~~~~~~v~ieaSGG  249 (284)
T 1qpo_A          181 VVDALRAVRNAAPDL-PCEVEVDSLEQLDAVLPEKPELILLDNFAVW----QTQ------TAVQRRDSRAPTVMLESSGG  249 (284)
T ss_dssp             HHHHHHHHHHHCTTS-CEEEEESSHHHHHHHGGGCCSEEEEETCCHH----HHH------HHHHHHHHHCTTCEEEEESS
T ss_pred             HHHHHHHHHHhCCCC-CEEEEeCCHHHHHHHHHcCCCEEEECCCCHH----HHH------HHHHHhhccCCCeEEEEECC
Confidence            345677777777765 5555777899999999999999988752110    011      0111111    123  6999


Q ss_pred             cccHHHHHHHHHcCCCEEEEc
Q psy3862         221 VVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG  241 (671)
                      | |.+.++++.++|+|.+-||
T Consensus       250 I-t~~~i~~~a~tGVD~isvG  269 (284)
T 1qpo_A          250 L-SLQTAATYAETGVDYLAVG  269 (284)
T ss_dssp             C-CTTTHHHHHHTTCSEEECG
T ss_pred             C-CHHHHHHHHhcCCCEEEEC
Confidence            9 8899999999999999877

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=85.42  E-value=0.86  Score=47.24  Aligned_cols=75  Identities=21%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             EeccHHHHHHHHHCCCcEEEECcCCCceEE----EE-------------e-cc--------cCCcchhhhhcc---ccC-
Q psy3862         167 NVVTGEMVEELILSGADVIKVGIGPGSVCT----TR-------------L-KN--------KTSDFFLIQFYS---CIP-  216 (671)
Q Consensus       167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~----t~-------------v-~~--------~~~~~~~i~~i~---~~p-  216 (671)
                      .+.+.+.+...+++|+|+|.+.|-.|.+.+    ..             + .+        ...++.++..+.   .+| 
T Consensus       131 ~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPv  210 (305)
T 2nv1_A          131 GCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPV  210 (305)
T ss_dssp             EESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSS
T ss_pred             EeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCE
Confidence            345666666667999999999763341100    00             0 00        112333333332   245 


Q ss_pred             ---CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 ---QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 ---~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                         +.|||.|.+.+..++++|||||-||
T Consensus       211 i~~a~GGI~~~~d~~~~~~~GadgV~vG  238 (305)
T 2nv1_A          211 VNFAAGGVATPADAALMMQLGADGVFVG  238 (305)
T ss_dssp             CEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred             EEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence               4799999999999999999999999

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=84.99  E-value=0.88  Score=46.34  Aligned_cols=111  Identities=24%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCeEEEc----c-----CCCHHHHHHHHhcC-cccccceeeecccChhhHHHHHHcCCcEEEEccccccccc
Q psy3862         348 MAKHLAKHGLFTTIH----K-----YYTLEEWKAFAVQN-PDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ  417 (671)
Q Consensus       348 mA~~la~~Gglgvih----r-----~~~~e~~~~~v~~~-~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~  417 (671)
                      ++..+.+.|+-+++.    -     ..+.+++.+.+++. ++-+. +.....-+.++..++.++|+|+|+.-+...|-..
T Consensus        84 f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~-vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~~  162 (264)
T 1xm3_A           84 IARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFI-VLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQ  162 (264)
T ss_dssp             HHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCC-EEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCC
T ss_pred             HHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeE-EEEEcCCCHHHHHHHHHhCCCEEEECCcccCCCC
Confidence            455555666666632    2     23455666665542 00011 1111112346677778899999965222122111


Q ss_pred             --cccccccccccccccccccccccC--ceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         418 --SGGELTNIEYMFFPLVGDMNSYLG--GVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       418 --~~~~~~~~~~~~~~~~~~~~~~~~--~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                        ...+          .+..+++...  -++.||+-...++.+++.+|||+|.||.
T Consensus       163 ~~~~~~----------~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS  208 (264)
T 1xm3_A          163 GILNPL----------NLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT  208 (264)
T ss_dssp             CCSCHH----------HHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred             CCCCHH----------HHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence              1111          2333343322  1445674345566667999999999995

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=84.99  E-value=1.6  Score=44.66  Aligned_cols=112  Identities=14%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             HHHHHHHHhCCCce-EEEeeccCCCChHHHHHHHHHHHhC-CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce-EE
Q psy3862         120 AGLKEILAALPEIE-YICLDVANGYTQTFVDFVRRIREMY-PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV-CT  196 (671)
Q Consensus       120 ~rl~~l~~a~~~~d-~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~-~~  196 (671)
                      ..++.+.++  +++ +++.|...+....+.+.+   ++.. +... +++-..+.++++.+.+.+..++-+.+..|.. ..
T Consensus       110 ~f~~~~~~a--G~dGviv~Dl~~ee~~~~~~~~---~~~gl~~i~-liap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~  183 (271)
T 1ujp_A          110 RFFGLFKQA--GATGVILPDLPPDEDPGLVRLA---QEIGLETVF-LLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR  183 (271)
T ss_dssp             HHHHHHHHH--TCCEEECTTCCGGGCHHHHHHH---HHHTCEEEC-EECTTCCHHHHHHHHTTCCSCEEEECC-------
T ss_pred             HHHHHHHHc--CCCEEEecCCCHHHHHHHHHHH---HHcCCceEE-EeCCCCCHHHHHHHHHhCCCCEEEEecCcccCCC
Confidence            345667777  778 455554433334444444   3332 2112 2222245788888888777766554433321 11


Q ss_pred             EEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         197 TRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       197 t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +....  +...++..++   .+|  ++|||-|.++++.+  +|||||-||
T Consensus       184 ~~~~~--~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG  229 (271)
T 1ujp_A          184 ERLPE--EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG  229 (271)
T ss_dssp             -------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred             CCCCc--cHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence            11110  1112333332   356  79999999999996  999999999

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=84.57  E-value=3.7  Score=49.57  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=20.0

Q ss_pred             eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +..||+....++.++|.+|||.|+||.
T Consensus       791 i~~GGI~s~~da~~~l~~Ga~~v~vg~  817 (1025)
T 1gte_A          791 LATGGIDSAESGLQFLHSGASVLQVCS  817 (1025)
T ss_dssp             EEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             EEecCcCCHHHHHHHHHcCCCEEEEee
Confidence            346776555555668899999999985

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=84.57  E-value=4.3  Score=43.24  Aligned_cols=108  Identities=19%  Similarity=0.194  Sum_probs=64.8

Q ss_pred             HHHhCCCceEEEeeccCCCC------------------------hHHHHHHHHHHHhCC---CceEEEEE--ec------
Q psy3862         125 ILAALPEIEYICLDVANGYT------------------------QTFVDFVRRIREMYP---KHVIIAGN--VV------  169 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~P---~~~li~g~--v~------  169 (671)
                      ..++  +.|.|-++.+||+.                        +-..+.++.+|+..+   ...++...  ..      
T Consensus       170 a~~a--GfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~  247 (364)
T 1vyr_A          170 AREA--GFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  247 (364)
T ss_dssp             HHHT--TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHc--CCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCC
Confidence            4555  78889888887651                        124455677776542   22333322  11      


Q ss_pred             -cH----HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEE
Q psy3862         170 -TG----EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVI  238 (671)
Q Consensus       170 -t~----e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-Adgv  238 (671)
                       +.    +.++.|.++|+|+|.+-...-..     .... ....+..++   .+|  ..|++ |.+.+..+++.| ||+|
T Consensus       248 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-----~~~~-~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V  320 (364)
T 1vyr_A          248 NEEADALYLIEELAKRGIAYLHMSETDLAG-----GKPY-SEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAV  320 (364)
T ss_dssp             THHHHHHHHHHHHHHTTCSEEEEECCBTTB-----CCCC-CHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEecCcccC-----CCcc-cHHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEE
Confidence             22    34889999999999874321000     0000 122222232   246  68889 999999999998 9999


Q ss_pred             EEc
Q psy3862         239 KVG  241 (671)
Q Consensus       239 kVG  241 (671)
                      -+|
T Consensus       321 ~~g  323 (364)
T 1vyr_A          321 AFG  323 (364)
T ss_dssp             EES
T ss_pred             EEC
Confidence            777

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=84.51  E-value=1.8  Score=43.54  Aligned_cols=27  Identities=11%  Similarity=0.054  Sum_probs=24.3

Q ss_pred             ceeeecccChhhHHHHHH--cCCcEEEEc
Q psy3862         383 HVADGGCTSPGDVAKAMG--AGADFVMLG  409 (671)
Q Consensus       383 ~v~~~~~~~~~~~~~l~~--aG~d~i~id  409 (671)
                      .+.+.||++++.+..+++  +|+|.+++.
T Consensus       189 ~I~vdGGI~~~~~~~~~~~~aGad~~VvG  217 (237)
T 3cu2_A          189 LINIDGSMTLELAKYFKQGTHQIDWLVSG  217 (237)
T ss_dssp             EEEEESSCCHHHHHHHHHSSSCCCCEEEC
T ss_pred             eEEEECCcCHHHHHHHHHhCCCCcEEEEe
Confidence            377789999999999999  999999987

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=84.10  E-value=4.1  Score=41.02  Aligned_cols=72  Identities=19%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             ChhhHHHHHHcCCcEEEEccccccccc-----cccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEE
Q psy3862         391 SPGDVAKAMGAGADFVMLGGMFAGHDQ-----SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFV  465 (671)
Q Consensus       391 ~~~~~~~l~~aG~d~i~id~~a~gh~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V  465 (671)
                      +.+++.+..+.|+|+|.+..+....++     ..++.++.+....|      .-++-+.+||+ ...++..++.+|||+|
T Consensus       144 t~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~------~~iPvvAiGGI-~~~ni~~~~~aGa~gv  216 (243)
T 3o63_A          144 DPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG------DDKPWFAIGGI-NAQRLPAVLDAGARRI  216 (243)
T ss_dssp             SHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---------CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred             CHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc------CCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence            457777777899999999643322221     11222222211100      01222557885 7777888899999999


Q ss_pred             EECc
Q psy3862         466 MLGG  469 (671)
Q Consensus       466 ~vG~  469 (671)
                      -||.
T Consensus       217 av~s  220 (243)
T 3o63_A          217 VVVR  220 (243)
T ss_dssp             EESH
T ss_pred             EEeH
Confidence            9984

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=84.09  E-value=4.7  Score=40.77  Aligned_cols=124  Identities=22%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             CceEEecCCCcc------ccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcc-cccceE-EecCCChhhHHHHHHHHH
Q psy3862          56 GVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPD-VIKHVA-VSSGISAKDLAGLKEILA  127 (671)
Q Consensus        56 ~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~-~~~~~~-v~~G~~~~d~~rl~~l~~  127 (671)
                      ++|++.  |++.      +..+.+...+..|.=|++=..+++|+...+...... -...+. +++.   ...+|+.++..
T Consensus        94 ~~Pi~~--m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~---t~~~rl~~ia~  168 (262)
T 2ekc_A           94 DIPFLL--MTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPT---STRKRIKLICE  168 (262)
T ss_dssp             TSCEEE--ECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTT---CCHHHHHHHHH
T ss_pred             CCCEEE--EecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHH
Confidence            678877  5432      225667767777766886667778776555421110 011111 1221   23457777766


Q ss_pred             hCCCceEEEeeccCC-------CC-hHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEEC
Q psy3862         128 ALPEIEYICLDVANG-------YT-QTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       128 a~~~~d~Ivld~a~G-------~~-~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      ...+  ++......|       .+ ....+.++++|+.. ...+.+| .+.+++.++. +.+|||.++|.
T Consensus       169 ~a~g--fiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gADgvIVG  234 (262)
T 2ekc_A          169 AADE--MTYFVSVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFADGVVVG  234 (262)
T ss_dssp             HCSS--CEEEESSCC---------CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTSSEEEEC
T ss_pred             hCCC--CEEEEecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCCCEEEEC
Confidence            6333  332222222       12 34557788887754 3334444 5678999998 78899999984

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=83.99  E-value=3.7  Score=41.69  Aligned_cols=107  Identities=11%  Similarity=0.052  Sum_probs=64.8

Q ss_pred             HHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHC-CCcEEEECcCCCceEEEEec
Q psy3862         122 LKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILS-GADVIKVGIGPGSVCTTRLK  200 (671)
Q Consensus       122 l~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~A-GaD~IvVdga~G~~~~t~v~  200 (671)
                      +.+...+  |+|++.++.+-=....+.++++..++ .  +..+..-+.+.+.++++.++ |+|+|-+--.+       +.
T Consensus       116 i~ea~~~--GAD~ilLi~a~l~~~~l~~l~~~a~~-l--Gl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~-------l~  183 (251)
T 1i4n_A          116 VKLASSV--GADAILIIARILTAEQIKEIYEAAEE-L--GMDSLVEVHSREDLEKVFSVIRPKIIGINTRD-------LD  183 (251)
T ss_dssp             HHHHHHT--TCSEEEEEGGGSCHHHHHHHHHHHHT-T--TCEEEEEECSHHHHHHHHTTCCCSEEEEECBC-------TT
T ss_pred             HHHHHHc--CCCEEEEecccCCHHHHHHHHHHHHH-c--CCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcc-------cc
Confidence            4445555  88998888662111334444444333 2  23333356788999999999 99999442211       11


Q ss_pred             ccCCcc----hhhhhcc-ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         201 NKTSDF----FLIQFYS-CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       201 ~~~~~~----~~i~~i~-~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+++    .+++.+. ..+  ..|||-|.+.++.+.++ ||||-||
T Consensus       184 t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG  230 (251)
T 1i4n_A          184 TFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVG  230 (251)
T ss_dssp             TCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEEC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEc
Confidence            111121    2222221 112  59999999999999999 9999999

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=83.87  E-value=3.5  Score=43.92  Aligned_cols=108  Identities=20%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             HHHhCCCceEEEeeccCCCC------------------------hHHHHHHHHHHHhC---CCceEEEEEe--------c
Q psy3862         125 ILAALPEIEYICLDVANGYT------------------------QTFVDFVRRIREMY---PKHVIIAGNV--------V  169 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~---P~~~li~g~v--------~  169 (671)
                      ..++  +.|.|-++.+||+.                        +-..+.++.+|+..   |...++....        .
T Consensus       170 a~~a--GfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~  247 (365)
T 2gou_A          170 AMEA--GFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDAD  247 (365)
T ss_dssp             HHHT--TCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSS
T ss_pred             HHHc--CCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCC
Confidence            3455  78889888877642                        12345566666543   3333343311        1


Q ss_pred             c----HHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEE
Q psy3862         170 T----GEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIK  239 (671)
Q Consensus       170 t----~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-Adgvk  239 (671)
                      +    .+.++.|.++|+|+|.+-...-..     ...+ ....+..++   .+|  ..|+| |.+.+..+++.| ||+|-
T Consensus       248 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-----~~~~-~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~  320 (365)
T 2gou_A          248 PILTYTAAAALLNKHRIVYLHIAEVDWDD-----APDT-PVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIG  320 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCBTTB-----CCCC-CHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCcCC-----CCCc-cHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceeh
Confidence            2    244888999999999874321000     0001 112222232   246  68999 999999999999 99997


Q ss_pred             Ec
Q psy3862         240 VG  241 (671)
Q Consensus       240 VG  241 (671)
                      +|
T Consensus       321 ig  322 (365)
T 2gou_A          321 FG  322 (365)
T ss_dssp             CC
T ss_pred             hc
Confidence            77

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=83.74  E-value=1.1  Score=46.94  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=18.9

Q ss_pred             eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +..||+....++.+++.+|||.|++|.
T Consensus       293 i~~GGI~~~~da~~~l~~GAd~V~igr  319 (336)
T 1f76_A          293 IGVGGIDSVIAAREKIAAGASLVQIYS  319 (336)
T ss_dssp             EEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             EEECCCCCHHHHHHHHHCCCCEEEeeH
Confidence            345665444444557899999999985

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=83.72  E-value=1.7  Score=43.81  Aligned_cols=167  Identities=14%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             cCceEEecCCCcccc-HHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCcccccceEE--ecCCC----hhh---HHHHHH
Q psy3862          55 QGVPIIAANMDTVGT-FEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAV--SSGIS----AKD---LAGLKE  124 (671)
Q Consensus        55 l~~Piv~a~M~~vt~-~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p~~~~~~~v--~~G~~----~~d---~~rl~~  124 (671)
                      +..|+..++|.+..+ .+++.+..+.|.-+++=   .+ .+.+...+.-....++.+  ..+.+    +.+   .+.+++
T Consensus        32 id~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~---~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~  107 (273)
T 2qjg_A           32 MDHGVSNGPIKGLIDIRKTVNDVAEGGANAVLL---HK-GIVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEE  107 (273)
T ss_dssp             CCHHHHHCSCTTSSSHHHHHHHHHHHTCSEEEE---CH-HHHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECSCHHH
T ss_pred             cccccccCCCcchhhHHHHHHHHHhcCCCEEEe---CH-HHHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHHHHHH
Confidence            345665677877665 46777666666555531   11 122222111000112222  12221    111   345566


Q ss_pred             HHHhCCCceEE--EeeccCCCChHHHHHHHHHHH---hCCCceEEEEEe---------ccH---HHH-HHHHHCCCcEEE
Q psy3862         125 ILAALPEIEYI--CLDVANGYTQTFVDFVRRIRE---MYPKHVIIAGNV---------VTG---EMV-EELILSGADVIK  186 (671)
Q Consensus       125 l~~a~~~~d~I--vld~a~G~~~~~~~~ik~lr~---~~P~~~li~g~v---------~t~---e~a-~~Li~AGaD~Iv  186 (671)
                      .+..  +++.+  .+...........+.++++.+   .+.. .++....         .+.   +.+ +.+.++|+|+|.
T Consensus       108 a~~~--Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~-~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~  184 (273)
T 2qjg_A          108 AIRM--GADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGM-PLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVK  184 (273)
T ss_dssp             HHHT--TCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTC-CEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHc--CCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCC-CEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEE
Confidence            6676  77777  443332222333344444422   2322 1222120         122   333 788899999998


Q ss_pred             ECcCCCceEEEEecccCCcchhhhhcc---ccC--Ccccccc--HHH----HHHHHHcCCCEEEEc
Q psy3862         187 VGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVT--GEM----VEELILSGADVIKVG  241 (671)
Q Consensus       187 Vdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t--~~~----a~~li~aGAdgvkVG  241 (671)
                      +.-..             ++..+..+.   .+|  +.|||.+  .+.    +..++++||+|+-||
T Consensus       185 ~~~~~-------------~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg  237 (273)
T 2qjg_A          185 TSYTG-------------DIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVG  237 (273)
T ss_dssp             ECCCS-------------SHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECC
T ss_pred             ECCCC-------------CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEee
Confidence            75211             122222221   245  6999995  666    667778999999876

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=83.66  E-value=4.2  Score=40.23  Aligned_cols=112  Identities=18%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEecc-HHHHHHHHHCCCc-EEE-ECcCCCceEE
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVT-GEMVEELILSGAD-VIK-VGIGPGSVCT  196 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t-~e~a~~Li~AGaD-~Iv-Vdga~G~~~~  196 (671)
                      +.++.+.++  +++.+++....  ..+..+.++.+++... -..++-+..| .+.++.+.+ ++| +|- +.. .|..-.
T Consensus        99 ~~~~~~~~~--Gad~v~~~~~~--~~~~~~~~~~~~~~g~-~~~~~i~~~t~~e~~~~~~~-~~d~~i~~~~~-~G~~g~  171 (248)
T 1geq_A           99 NFLAEAKAS--GVDGILVVDLP--VFHAKEFTEIAREEGI-KTVFLAAPNTPDERLKVIDD-MTTGFVYLVSL-YGTTGA  171 (248)
T ss_dssp             HHHHHHHHH--TCCEEEETTCC--GGGHHHHHHHHHHHTC-EEEEEECTTCCHHHHHHHHH-HCSSEEEEECC-C-----
T ss_pred             HHHHHHHHC--CCCEEEECCCC--hhhHHHHHHHHHHhCC-CeEEEECCCCHHHHHHHHHh-cCCCeEEEEEC-CccCCC
Confidence            456667777  78888775332  1233333333333322 2223323334 455555544 467 552 222 331100


Q ss_pred             EEecccC-C-cchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         197 TRLKNKT-S-DFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       197 t~v~~~~-~-~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +   ..+ + .+..+..+.   .+|  +.|||.+.+.+..++++|||++-||
T Consensus       172 ~---~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG  220 (248)
T 1geq_A          172 R---EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG  220 (248)
T ss_dssp             -----CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred             C---CCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence            0   001 1 112222221   356  7999999999999999999999998

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=83.62  E-value=6.5  Score=41.79  Aligned_cols=61  Identities=16%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             HHHcCCcEEEEcccc-ccccccccccccccccccccccccccccC-ceeeccccCchhHHH-HHHcC-CcEEEECc
Q psy3862         398 AMGAGADFVMLGGMF-AGHDQSGGELTNIEYMFFPLVGDMNSYLG-GVVDGGCTSPGDVAK-AMGAG-ADFVMLGG  469 (671)
Q Consensus       398 l~~aG~d~i~id~~a-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gG~v~t~~~a~-~l~aG-Ad~V~vG~  469 (671)
                      |.++|+|+|.+-+.. .+.....          .+++..+|+.+. .++..|.+ +.+.++ +++.| ||.|++|.
T Consensus       260 l~~~G~d~i~v~~~~~~~~~~~~----------~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR  324 (364)
T 1vyr_A          260 LAKRGIAYLHMSETDLAGGKPYS----------EAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGR  324 (364)
T ss_dssp             HHHTTCSEEEEECCBTTBCCCCC----------HHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESH
T ss_pred             HHHhCCCEEEEecCcccCCCccc----------HHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEEEECH
Confidence            356899999985311 1100001          122333444443 25555555 666655 67887 99999985

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=83.53  E-value=0.96  Score=46.73  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcC---CCceEE-EEecccC-Cc--chhhhhcccc-C-
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG---PGSVCT-TRLKNKT-SD--FFLIQFYSCI-P-  216 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga---~G~~~~-t~v~~~~-~~--~~~i~~i~~~-p-  216 (671)
                      ...++++.-++.   ...-..-+.+.++++++.++|+|+|++.-.   +|.+=+ +.+.... +.  -...+.+..+ | 
T Consensus       151 ~eve~I~~A~~~---gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpd  227 (286)
T 2p10_A          151 QEVEMIAEAHKL---DLLTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDD  227 (286)
T ss_dssp             HHHHHHHHHHHT---TCEECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHC---CCeEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCC
Confidence            345555554443   123334567899999999999999998653   222211 1111000 00  0011111111 2 


Q ss_pred             -----CccccccHHHHHHHHHc--CCCEEEEc
Q psy3862         217 -----QAGNVVTGEMVEELILS--GADVIKVG  241 (671)
Q Consensus       217 -----~aGnV~t~~~a~~li~a--GAdgvkVG  241 (671)
                           .+|+|.|++.++.+++.  |++|+..+
T Consensus       228 vivLc~gGpIstpeDv~~~l~~t~G~~G~~gA  259 (286)
T 2p10_A          228 IIILSHGGPIANPEDARFILDSCQGCHGFYGA  259 (286)
T ss_dssp             CEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred             cEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence                 48899999999999999  99999665

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=83.52  E-value=1.6  Score=45.98  Aligned_cols=51  Identities=20%  Similarity=0.042  Sum_probs=29.9

Q ss_pred             HHHHHHHHcCCCEEEEcccCCCccccceecccCcc-hhhhHHHHHHHhhhcCC
Q psy3862         225 EMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP-QFSAVLECADAAHGLGG  276 (671)
Q Consensus       225 ~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~-~~~~~~~~~~~~~~~~~  276 (671)
                      +++..++++|+|.|++-+...-.- .+...+..+- .+..+.++.++|+++|.
T Consensus       100 ~~i~~a~~~g~~~v~i~~~~s~~~-~~~~~~~s~~e~l~~~~~~v~~ak~~G~  151 (337)
T 3ble_A          100 KTVDWIKDSGAKVLNLLTKGSLHH-LEKQLGKTPKEFFTDVSFVIEYAIKSGL  151 (337)
T ss_dssp             HHHHHHHHHTCCEEEEEEECSHHH-HHHHTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHCCCCEEEEEEecCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence            489999999999999864322111 1112222222 23456677777777653

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=83.39  E-value=2.7  Score=43.03  Aligned_cols=171  Identities=18%  Similarity=0.115  Sum_probs=89.6

Q ss_pred             cCceEEecCCCccccHHHHHHHHHcCCeEEeec--CCCHHH-------------HHHhhhcCcccccceEEecCCChhhH
Q psy3862          55 QGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK--YYTLEE-------------WKAFAVQNPDVIKHVAVSSGISAKDL  119 (671)
Q Consensus        55 l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~--n~~~Ee-------------q~~~i~~~p~~~~~~~v~~G~~~~d~  119 (671)
                      |+-|++.+    ++..+++.++.+.|.-++ |-  +.+.+.             ..+.+++.  ...|+.+....  .+.
T Consensus        20 ~~~~~i~~----~~~~~~a~~~~~~Ga~~i-~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~--~~~Pvi~~~~~--~~~   90 (297)
T 2zbt_A           20 FKGGVIMD----VTTPEQAVIAEEAGAVAV-MALERVPADIRAQGGVARMSDPKIIKEIMAA--VSIPVMAKVRI--GHF   90 (297)
T ss_dssp             GTTEEEEE----ESSHHHHHHHHHHTCSEE-EECSSCHHHHHHTTCCCCCCCHHHHHHHHTT--CSSCEEEEEET--TCH
T ss_pred             hhCCeeee----echHHHHHHHHHCCCcEE-EeccccchHHHhhcCCccCCCHHHHHHHHHh--cCCCeEEEecc--CCH
Confidence            56677653    233788988888775554 32  222221             11222211  11233322111  124


Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce----E
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV----C  195 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~----~  195 (671)
                      +.++.+.++  +++.+..  ....  +..+.++.+++.++...+++ .+.+.+.+..+.++|+|+|.+.+-.|..    +
T Consensus        91 ~~~~~~~~a--Gad~v~~--~~~~--~~~~~~~~~~~~~~~i~l~~-~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~  163 (297)
T 2zbt_A           91 VEAMILEAI--GVDFIDE--SEVL--TPADEEHHIDKWKFKVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA  163 (297)
T ss_dssp             HHHHHHHHT--TCSEEEE--ETTS--CCSCSSCCCCGGGCSSCEEE-EESSHHHHHHHHHTTCSEEEECCCSSSCCTHHH
T ss_pred             HHHHHHHHC--CCCEEee--eCCC--ChHHHHHHHHHhCCCceEEe-ecCCHHHHHHHHHcCCCEEEEcccccCcchHHH
Confidence            566666666  7787722  1111  11122233222233333443 3567888888999999999886421111    0


Q ss_pred             EEE-------ec---------------ccCCcchhhhhcc---ccC----CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 TTR-------LK---------------NKTSDFFLIQFYS---CIP----QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 ~t~-------v~---------------~~~~~~~~i~~i~---~~p----~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.       ++               ...+++..+..+.   .+|    +.|||.|.+.+..++++|||++-||
T Consensus       164 ~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvG  238 (297)
T 2zbt_A          164 VRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVG  238 (297)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEc
Confidence            000       00               0112222233332   245    5899999999999999999999999

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=83.32  E-value=2.8  Score=42.88  Aligned_cols=27  Identities=37%  Similarity=0.538  Sum_probs=21.4

Q ss_pred             eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         443 VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       443 ~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      +++||+-.+.+++++|+.|||+|.||.
T Consensus       182 I~~GGI~tpsDAa~AmeLGAdgVlVgS  208 (268)
T 2htm_A          182 VVDAGLGLPSHAAEVMELGLDAVLVNT  208 (268)
T ss_dssp             EEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred             EEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            447776566677779999999999985

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=82.79  E-value=9.7  Score=39.44  Aligned_cols=63  Identities=14%  Similarity=0.084  Sum_probs=34.7

Q ss_pred             HHHHcCCcEEEEccccc--cccccccccccccccccccccccccccCceeeccccCchhHHH-HHH-cCCcEEEECc
Q psy3862         397 KAMGAGADFVMLGGMFA--GHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMG-AGADFVMLGG  469 (671)
Q Consensus       397 ~l~~aG~d~i~id~~a~--gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~-aGAd~V~vG~  469 (671)
                      .+.++|+|+|.+.+...  +++.         ...+..+..+++ --.++..|-+.+.+-+. +++ .|||.|++|.
T Consensus       148 ~l~~~G~d~i~v~g~~~~~~~~~---------~~~~~~i~~i~~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR  214 (318)
T 1vhn_A          148 ILVEEGVDEVFIHTRTVVQSFTG---------RAEWKALSVLEK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVAR  214 (318)
T ss_dssp             HHHHTTCCEEEEESSCTTTTTSS---------CCCGGGGGGSCC-SSCEEEESSCCSHHHHHHHHHHHCCSEEEESG
T ss_pred             HHHHhCCCEEEEcCCCccccCCC---------CcCHHHHHHHHc-CCeEEEECCcCCHHHHHHHHHcCCCCEEEECH
Confidence            34678999999864321  1211         011223333444 11244444455555544 676 7999999996

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=82.55  E-value=3.1  Score=43.89  Aligned_cols=25  Identities=40%  Similarity=0.675  Sum_probs=19.7

Q ss_pred             eccccCchhHHHHHHcCCcEEEECc
Q psy3862         445 DGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       445 ~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .||+-.+.++.+++++|||+|+||.
T Consensus       248 eGGI~Tpeda~~~l~~GaDgV~VGs  272 (330)
T 2yzr_A          248 AGGVATPADAALMMQLGSDGVFVGS  272 (330)
T ss_dssp             CSCCCSHHHHHHHHHTTCSCEEESH
T ss_pred             ECCCCCHHHHHHHHHcCcCEEeeHH
Confidence            6775456666668899999999995

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=82.32  E-value=1  Score=45.77  Aligned_cols=108  Identities=18%  Similarity=0.032  Sum_probs=62.8

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      .++.+....  ++|.+++..+.-. ..+.++++..++ +. ...+ ..+.+.+.++.+++.|+|.|-+..-.       +
T Consensus       119 ~qi~~a~~~--GAD~VlL~~~~l~-~~l~~l~~~a~~-lG-l~~l-vev~~~~E~~~a~~~gad~IGvn~~~-------l  185 (254)
T 1vc4_A          119 FMLEEARAF--GASAALLIVALLG-ELTGAYLEEARR-LG-LEAL-VEVHTERELEIALEAGAEVLGINNRD-------L  185 (254)
T ss_dssp             HHHHHHHHT--TCSEEEEEHHHHG-GGHHHHHHHHHH-HT-CEEE-EEECSHHHHHHHHHHTCSEEEEESBC-------T
T ss_pred             HHHHHHHHc--CCCEEEECccchH-HHHHHHHHHHHH-CC-CeEE-EEECCHHHHHHHHHcCCCEEEEcccc-------C
Confidence            345555565  8888887643111 223333332222 32 1222 23567778888999999999542211       1


Q ss_pred             cccCCcch----hhhhcc----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         200 KNKTSDFF----LIQFYS----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       200 ~~~~~~~~----~i~~i~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +...+++.    +.+.+.    .+|  +.|||.|.+.++.+.+ ||||+-||
T Consensus       186 ~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVG  236 (254)
T 1vc4_A          186 ATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIG  236 (254)
T ss_dssp             TTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEEC
T ss_pred             cCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEe
Confidence            11111211    223331    234  6899999999999999 99999999

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=82.06  E-value=0.62  Score=48.19  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=40.9

Q ss_pred             HHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +++..+.|.+++.+|++. ..         .+..++..++     .+|  ++|||-|.++++.++++|||+|-||
T Consensus       192 a~~gad~G~~lV~LD~~~-~~---------v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG  256 (286)
T 3vk5_A          192 LHVARAFGFHMVYLYSRN-EH---------VPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA  256 (286)
T ss_dssp             HHHHHHTTCSEEEEECSS-SC---------CCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHcCCCEEEEcCCC-Cc---------CCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence            344457888999999744 11         1112222221     245  7999999999999999999999999

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=81.09  E-value=5.6  Score=38.09  Aligned_cols=109  Identities=17%  Similarity=0.068  Sum_probs=55.8

Q ss_pred             HHHHHHHcCCeEEE-ccCCCHHHHHHHHhcCcccccceeeecc--cChhh-HHHHHHcCCcEEEEc-ccccccc-ccccc
Q psy3862         348 MAKHLAKHGLFTTI-HKYYTLEEWKAFAVQNPDVIKHVADGGC--TSPGD-VAKAMGAGADFVMLG-GMFAGHD-QSGGE  421 (671)
Q Consensus       348 mA~~la~~Gglgvi-hr~~~~e~~~~~v~~~~~~~~~v~~~~~--~~~~~-~~~l~~aG~d~i~id-~~a~gh~-~~~~~  421 (671)
                      .+....+.|.=++. |-..+.+...+.++..++.-..+..+..  .++++ +..+.+.|+|++.+. +...+.. ....+
T Consensus        69 ~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~  148 (207)
T 3ajx_A           69 EADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLN  148 (207)
T ss_dssp             HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTH
T ss_pred             HHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHhCCCEEEEEecccccccCCCchH
Confidence            47777888876665 8766544433332221110001222111  14444 556667799999432 1111110 11111


Q ss_pred             ccccccccccccccccccc----CceeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         422 LTNIEYMFFPLVGDMNSYL----GGVVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~----~~~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                                  +.+++..    +-+++||+ ...+..+++++|||+|-||.
T Consensus       149 ------------~~i~~~~~~~~pi~v~GGI-~~~~~~~~~~aGad~vvvGs  187 (207)
T 3ajx_A          149 ------------GLLAAGEKARVPFSVAGGV-KVATIPAVQKAGAEVAVAGG  187 (207)
T ss_dssp             ------------HHHHHHHHHTSCEEEESSC-CGGGHHHHHHTTCSEEEESH
T ss_pred             ------------HHHHHhhCCCCCEEEECCc-CHHHHHHHHHcCCCEEEEee
Confidence                        1222221    12467774 56677778999999999985

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=80.89  E-value=4  Score=40.78  Aligned_cols=111  Identities=17%  Similarity=0.095  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCeEE-EccCC---CHHHHHHHHhcCcccccceeeecc--cChhhHHHHHHcCCcEEEEccccccccccccc
Q psy3862         348 MAKHLAKHGLFTT-IHKYY---TLEEWKAFAVQNPDVIKHVADGGC--TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGE  421 (671)
Q Consensus       348 mA~~la~~Gglgv-ihr~~---~~e~~~~~v~~~~~~~~~v~~~~~--~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~  421 (671)
                      ....+++.|.=.+ +|-..   ++++..+.+++.--   .+..+-.  +..+.+..++ .++|++.+-.+-.|...+.. 
T Consensus        72 ~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~---k~gv~lnp~tp~~~~~~~l-~~~D~VlvmsV~pGfggQ~f-  146 (231)
T 3ctl_A           72 YIAQLARAGADFITLHPETINGQAFRLIDEIRRHDM---KVGLILNPETPVEAMKYYI-HKADKITVMTVDPGFAGQPF-  146 (231)
T ss_dssp             THHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTC---EEEEEECTTCCGGGGTTTG-GGCSEEEEESSCTTCSSCCC-
T ss_pred             HHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCC---eEEEEEECCCcHHHHHHHH-hcCCEEEEeeeccCcCCccc-
Confidence            3466677776444 35322   36667777665311   1111111  2224444443 38999987633345542110 


Q ss_pred             cccccccccccccccccccC----c---eeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         422 LTNIEYMFFPLVGDMNSYLG----G---VVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~----~---~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                          +....+.+..+|+.+.    +   .++|| +...++.++.++|||++.+|
T Consensus       147 ----~~~~l~kI~~lr~~~~~~~~~~~I~VdGG-I~~~~~~~~~~aGAd~~V~G  195 (231)
T 3ctl_A          147 ----IPEMLDKLAELKAWREREGLEYEIEVDGS-CNQATYEKLMAAGADVFIVG  195 (231)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHTCCCEEEEESC-CSTTTHHHHHHHTCCEEEEC
T ss_pred             ----cHHHHHHHHHHHHHHhccCCCceEEEECC-cCHHHHHHHHHcCCCEEEEc
Confidence                1111112223333331    1   45777 57777778899999999998

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=80.55  E-value=2.2  Score=43.80  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .++.+.+.+++  ++|+|-+|..  .+..+.+.++.++..+|+..+++....+.+.++.+.++|||.|.+.+
T Consensus       191 tlee~~~A~~a--GaD~I~ld~~--~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~vGs  258 (273)
T 2b7n_A          191 SFEEAKNAMNA--GADIVMCDNL--SVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISVGA  258 (273)
T ss_dssp             SHHHHHHHHHH--TCSEEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEECTH
T ss_pred             CHHHHHHHHHc--CCCEEEECCC--CHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEEEcH
Confidence            45666666677  7899988853  34555555665666688877776655699999999999999997643

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=80.45  E-value=0.98  Score=47.64  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=23.5

Q ss_pred             ccccccHHHHHHHHHcCCCEEEEc
Q psy3862         218 AGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       218 aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      -|||.|.+.++.++++|||||-||
T Consensus       248 eGGI~Tpeda~~~l~~GaDgV~VG  271 (330)
T 2yzr_A          248 AGGVATPADAALMMQLGSDGVFVG  271 (330)
T ss_dssp             CSCCCSHHHHHHHHHTTCSCEEES
T ss_pred             ECCCCCHHHHHHHHHcCcCEEeeH
Confidence            899999999999999999999999

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=80.39  E-value=6.6  Score=44.86  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             cccccccC-ceeeccccCchhHHH-HHHcC-CcEEEEC
Q psy3862         434 GDMNSYLG-GVVDGGCTSPGDVAK-AMGAG-ADFVMLG  468 (671)
Q Consensus       434 ~~~~~~~~-~~i~gG~v~t~~~a~-~l~aG-Ad~V~vG  468 (671)
                      ..+|+.+. .++..|.+.+.+.++ +++.| ||.|.+|
T Consensus       273 ~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~g  310 (671)
T 1ps9_A          273 RKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMA  310 (671)
T ss_dssp             HHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEES
T ss_pred             HHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeC
Confidence            34454443 255566666777666 67888 9999999

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=80.38  E-value=3.7  Score=40.86  Aligned_cols=111  Identities=23%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             HHHHHHcCCeE-EEccC--CCHHHHHHHHhcCcccccceeeec--ccChhhHHHHHHcCCcEEEEccccccccccccccc
Q psy3862         349 AKHLAKHGLFT-TIHKY--YTLEEWKAFAVQNPDVIKHVADGG--CTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELT  423 (671)
Q Consensus       349 A~~la~~Gglg-vihr~--~~~e~~~~~v~~~~~~~~~v~~~~--~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~  423 (671)
                      ...+++.|.=. .+|--  .++.+..+.+++.--   .+..+-  .+..+.++.+.+ .+|++.+..+-.|..-...   
T Consensus        80 i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~---k~gval~p~t~~e~l~~~l~-~~D~Vl~msv~pGf~Gq~f---  152 (228)
T 3ovp_A           80 VKPMAVAGANQYTFHLEATENPGALIKDIRENGM---KVGLAIKPGTSVEYLAPWAN-QIDMALVMTVEPGFGGQKF---  152 (228)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTC---EEEEEECTTSCGGGTGGGGG-GCSEEEEESSCTTTCSCCC---
T ss_pred             HHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCC---CEEEEEcCCCCHHHHHHHhc-cCCeEEEeeecCCCCCccc---
Confidence            34455555322 23421  246667777665311   111111  122344444443 4899988744445532111   


Q ss_pred             cccccccccccccccccCc---eeeccccCchhHHHHHHcCCcEEEECc
Q psy3862         424 NIEYMFFPLVGDMNSYLGG---VVDGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~---~i~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                        +....+.+..+|+..++   .++||+ ...++.++.++|||++.+|.
T Consensus       153 --~~~~l~ki~~lr~~~~~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGs  198 (228)
T 3ovp_A          153 --MEDMMPKVHWLRTQFPSLDIEVDGGV-GPDTVHKCAEAGANMIVSGS  198 (228)
T ss_dssp             --CGGGHHHHHHHHHHCTTCEEEEESSC-STTTHHHHHHHTCCEEEESH
T ss_pred             --CHHHHHHHHHHHHhcCCCCEEEeCCc-CHHHHHHHHHcCCCEEEEeH
Confidence              01111112333443332   468884 66666778899999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	671
d1pvna1	362	c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate d	5e-60
d1pvna1	362	c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate d	2e-37
d1zfja1	365	c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d	2e-59
d1zfja1	365	c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d	1e-39
d2cu0a1	368	c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate d	8e-57
d2cu0a1	368	c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate d	7e-33
d1vrda1	330	c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate d	1e-52
d1vrda1	330	c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate d	2e-41
d1jr1a1	378	c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate	3e-43
d1jr1a1	378	c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate	2e-41
d1eepa_	388	c.1.5.1 (A:) Inosine monophosphate dehydrogenase (	6e-43
d1eepa_	388	c.1.5.1 (A:) Inosine monophosphate dehydrogenase (	3e-34
d1p0ka_	329	c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera	3e-11
d1p0ka_	329	c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera	2e-09
d1vcfa1	310	c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i	3e-09
d1vcfa1	310	c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i	2e-05
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	1e-06
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	5e-05
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	0.001
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	1e-05
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	9e-05
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	2e-04
d1kbia1	414	c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal	7e-05
d1p4ca_	353	c.1.4.1 (A:) Membrane-associated (S)-mandelate deh	1e-04
d1ea0a2	771	c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy	1e-04
d1ofda2	809	c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy	8e-04
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	0.002
d1djqa1	340	c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-	0.004

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Length = 362

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

 Score =  203 bits (517), Expect = 5e-60
 Identities = 71/348 (20%), Positives = 115/348 (33%), Gaps = 72/348 (20%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKS-RSEVDITRTFT---FRNSGKTYQGVPIIAANMDTV 343
           K  N+    F + +L P  ST+    S V+++            +    +P+++A M +V
Sbjct: 2   KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSV 61

Query: 344 GTFEMAKHLAKHGLFTTIHKYYTLEEW---------------------------KAFAVQ 376
              +MA  LA+ G  + I    ++E                              A    
Sbjct: 62  SGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEA 121

Query: 377 NPDVIK--------------------------HVADGGCTSPGDVAKAMGAGADFVMLGG 410
             DV+                            V  G             AGADF+ +G 
Sbjct: 122 GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGI 181

Query: 411 MFAGHDQSGGELTNIEYMFFPLVGD-----------MNSYLGGVVDGGCTSPGDVAKAMG 459
                     E   I       V D              Y+    DGG      +  A+ 
Sbjct: 182 GGGSI-CITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240

Query: 460 AGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKH---AGGVAEYRAAEG 516
            GADF+MLG  FA  ++S    +  +G  +K ++G  S+ A +      GG  +    EG
Sbjct: 241 MGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEG 300

Query: 517 KTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
               VPY G + D V+  L  ++S     GA  + +L  +A     ++
Sbjct: 301 VDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSS 348

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Length = 362

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

 Score =  141 bits (355), Expect = 2e-37
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKS-RSEVDITRTFT---FRNSGKTYQGVPIIAANMDTV 67
           K  N+    F + +L P  ST+    S V+++            +    +P+++A M +V
Sbjct: 2   KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSV 61

Query: 68  GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILA 127
              +MA  LA+ G  + I    ++E   A      +    V                + A
Sbjct: 62  SGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEA 121

Query: 128 ALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHV-IIAGNVVTGEMVEELILSGADVIK 186
                + +C+D ++G+++     +  IRE Y   V + AGN+V GE    L  +GAD IK
Sbjct: 122 ---GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIK 178

Query: 187 VGIGPGSVCTTRLKNKT 203
           +GIG GS+C TR +   
Sbjct: 179 IGIGGGSICITREQKGI 195

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  201 bits (513), Expect = 2e-59
 Identities = 87/344 (25%), Positives = 129/344 (37%), Gaps = 73/344 (21%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
           K +      F DV+L P  S +    EVD+               +PII A MDTV   +
Sbjct: 6   KFLKK-GYTFDDVLLIPAESHVLPN-EVDLKTKLA----DNLTLNIPIITAAMDTVTGSK 59

Query: 348 MAKHLAKHGLFTTIHKYYTLEE--WKAFAVQNPDVIKHVADGGCTSPGDVAKAM---GAG 402
           MA  +A+ G    IHK  ++ E   +   V+  +    VA     +     +A     AG
Sbjct: 60  MAIAIARAGGLGVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAG 119

Query: 403 ADFV---------------------------MLGGMFAGHDQ------------------ 417
           AD +                           ++ G  A  +                   
Sbjct: 120 ADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGP 179

Query: 418 ----SGGELTNIEYMFFPLVGDMNSYLGG-----VVDGGCTSPGDVAKAMGAGADFVMLG 468
               +   +  +       + D  +         + DGG    GD+ KA+ AG + VMLG
Sbjct: 180 GSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 239

Query: 469 GMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAG--------GVAEYRAAEGKTVQ 520
            MFAG D++ GE     G+K K + GM S  AM K +           A     EG   +
Sbjct: 240 SMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGR 299

Query: 521 VPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
           V Y+G  +D V  +LGG+RS   YVGA  ++EL   A F+  + 
Sbjct: 300 VAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQFVEMSG 343

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  147 bits (372), Expect = 1e-39
 Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 10/189 (5%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           K +      F DV+L P  S +    EVD+               +PII A MDTV   +
Sbjct: 6   KFLKK-GYTFDDVLLIPAESHVLPN-EVDLKTKLA----DNLTLNIPIITAAMDTVTGSK 59

Query: 72  MAKHLAKHGLFTTIHKYYTLEE--WKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAAL 129
           MA  +A+ G    IHK  ++ E   +   V+  +    VA + G+++      + +  A 
Sbjct: 60  MAIAIARAGGLGVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEA- 118

Query: 130 PEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI 189
              + I +D A+G++   +  +  IR  +P   +IAGN+ T E    L  +G DV+KVGI
Sbjct: 119 -GADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGI 177

Query: 190 GPGSVCTTR 198
           GPGS+CTTR
Sbjct: 178 GPGSICTTR 186

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Length = 368

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  194 bits (495), Expect = 8e-57
 Identities = 84/351 (23%), Positives = 140/351 (39%), Gaps = 78/351 (22%)

Query: 287 QKIINDIK-LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT 345
           +K+   IK   F DV+L P+ + ++ + +VD++   T          +PI++A MDTV  
Sbjct: 4   EKLEKAIKGYTFDDVLLIPQATEVEPK-DVDVSTRIT----PNVKLNIPILSAAMDTVTE 58

Query: 346 FEMAKHLAKHGLFTTIHKYYTLEE----------WKAFAVQNPDVIKHVADGGCTSPGDV 395
           +EMA  +A+ G    IH+   +EE           + +     D    +      SP D+
Sbjct: 59  WEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDI 118

Query: 396 AKA---MGAGADFVMLGG------------------------------------------ 410
            +A     AG D +++                                            
Sbjct: 119 KRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFIVGNIANPKAVDDLTFADA 178

Query: 411 ----MFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG-----VVDGGCTSPGDVAKAMGAG 461
               +  G   +   +  +       V  +           + DGG    GD+ KA+ AG
Sbjct: 179 VKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAG 238

Query: 462 ADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSST------TAMDKHAGGVAEYR--A 513
           AD VMLG + AG  ++ G+ +  +G+K K + GM S        A   + GG  + R   
Sbjct: 239 ADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFV 298

Query: 514 AEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 564
            EG    VPYRG V++ +  ++GGL++   YVGA  ++EL  +  F+  T 
Sbjct: 299 PEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIITH 349

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Length = 368

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  128 bits (322), Expect = 7e-33
 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 21/215 (9%)

Query: 11  QKIINDIK-LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT 69
           +K+   IK   F DV+L P+ + ++ + +VD++   T          +PI++A MDTV  
Sbjct: 4   EKLEKAIKGYTFDDVLLIPQATEVEPK-DVDVSTRIT----PNVKLNIPILSAAMDTVTE 58

Query: 70  FEMAKHLAKHGLFTTIHKYYTLEE----------WKAFAVQNPDVIKHVAVSSGISAKDL 119
           +EMA  +A+ G    IH+   +EE           + +     D    + V++ +S  D+
Sbjct: 59  WEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDI 118

Query: 120 AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELIL 179
               E+  A   ++ I +D A+ +    +  ++ +R+       I GN+   + V++L  
Sbjct: 119 KRAIELDKA--GVDVIVVDTAHAHNLKAIKSMKEMRQKVD-ADFIVGNIANPKAVDDLT- 174

Query: 180 SGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC 214
             AD +KVGIGPGS+CTTR+        +      
Sbjct: 175 -FADAVKVGIGPGSICTTRIVAGVGVPQITAVAMV 208

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

 Score =  182 bits (463), Expect = 1e-52
 Identities = 86/333 (25%), Positives = 129/333 (38%), Gaps = 69/333 (20%)

Query: 294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLA 353
            L F DV+L P+ S +  + +V I    T     +    +P+++A MDTV    +AK LA
Sbjct: 4   ALTFDDVLLVPQYSEVLPK-DVKIDTRLTR----QIRINIPLVSAAMDTVTEAALAKALA 58

Query: 354 KHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGD---VAKAMGAGADFV---- 406
           + G    IHK  T +E              V     TSP     V K + AG D +    
Sbjct: 59  REGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDT 118

Query: 407 ---------------------------------------------MLGGMFAGHDQSGGE 421
                                                        +  G+  G   +   
Sbjct: 119 AHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRV 178

Query: 422 LTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVA------KAMGAGADFVMLGGMFAGHD 475
           +  +       V + +       D    + G +       KA+ AGA+ VM+G +FAG +
Sbjct: 179 VAGVGVPQLTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTE 237

Query: 476 QSGGELIEKDGKKVKLFYGMSSTTAM-----DKHAGGVAEYRAAEGKTVQVPYRGDVNDT 530
           ++ GE I   G+K K + GM S  AM     D++          EG    VPY+G V D 
Sbjct: 238 EAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIEGMVPYKGTVKDV 297

Query: 531 VQDILGGLRSACTYVGASKLKELPRRATFIRCT 563
           V  ++GGLRS   Y+GA  +KEL  +A F++ T
Sbjct: 298 VHQLVGGLRSGMGYIGARTIKELQEKAVFVKIT 330

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

 Score =  151 bits (382), Expect = 2e-41
 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 7/181 (3%)

Query: 18  KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLA 77
            L F DV+L P+ S +  + +V I    T     +    +P+++A MDTV    +AK LA
Sbjct: 4   ALTFDDVLLVPQYSEVLPK-DVKIDTRLTR----QIRINIPLVSAAMDTVTEAALAKALA 58

Query: 78  KHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICL 137
           + G    IHK  T +E              V  + G S + +  +++++ A   ++ I +
Sbjct: 59  REGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKA--GVDVIVI 116

Query: 138 DVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTT 197
           D A+G+++  ++ +  I+  YP   ++AGNV T E  E LI +GAD +KVG+GPGS+CTT
Sbjct: 117 DTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTT 176

Query: 198 R 198
           R
Sbjct: 177 R 177

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  157 bits (399), Expect = 3e-43
 Identities = 63/391 (16%), Positives = 113/391 (28%), Gaps = 48/391 (12%)

Query: 286 AQKIINDIK-LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 344
           AQ++ N    L + D ++ P      +  +VD+T   T + + K     P++++ MDTV 
Sbjct: 4   AQQLFNCGDGLTYNDFLILPGYIDFTAD-QVDLTSALTKKITLK----TPLVSSPMDTVT 58

Query: 345 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGD--VAKAMGAG 402
              MA  +A  G    IH   T E      V+     +        +        A+G  
Sbjct: 59  EAGMAIAMALTGGIGFIHHNCTPEFQANE-VRKVKKYEQYPLASKDAKKQLLCGAAIGTH 117

Query: 403 AD----FVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKA- 457
            D      +L               N  +    +      Y    V GG       AK  
Sbjct: 118 EDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNL 177

Query: 458 MGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGK 517
           + AG D + +G                              T      G        +  
Sbjct: 178 IDAGVDALRVGMGCGSIC----------------------ITQEVLACGRPQATAVYKVS 215

Query: 518 TVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDIL 577
                +   V         G  +    +GAS +       + +  T +          I 
Sbjct: 216 EYARRFGVPVIADGGIQNVGHIAKALALGASTVMM----GSLLAATTEAPGEYFFSDGIR 271

Query: 578 GGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGL 637
                    + A       +   F           A+G +  V  +G ++  V  ++ G+
Sbjct: 272 LKKYRGMGSLDAMDKHLSSQNRYFSEADKIK---VAQGVSGAVQDKGSIHKFVPYLIAGI 328

Query: 638 RSACTYVGASKLKELPR-----RATFIRCTA 663
           + +C  +GA  L ++          F + T+
Sbjct: 329 QHSCQDIGAKSLTQVRAMMYSGELKFEKRTS 359

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  152 bits (385), Expect = 2e-41
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 18/225 (8%)

Query: 10  AQKIINDIK-LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG 68
           AQ++ N    L + D ++ P      +  +VD+T   T + + K     P++++ MDTV 
Sbjct: 4   AQQLFNCGDGLTYNDFLILPGYIDFTAD-QVDLTSALTKKITLK----TPLVSSPMDTVT 58

Query: 69  TFEMAKHLAKHGLFTTIHKYYTLEEWKA----------FAVQNPDVIKHVAVSSGISAKD 118
              MA  +A  G    IH   T E              + + + D  K +   + I   +
Sbjct: 59  EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHE 118

Query: 119 LAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELI 178
               +  L AL  ++ + LD + G +   ++ ++ ++E YP   +I GNVVT    + LI
Sbjct: 119 DDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLI 178

Query: 179 LSGADVIKVGIGPGSVCTTRLKNK--TSDFFLIQFYSCIPQAGNV 221
            +G D ++VG+G GS+C T+            +   S   +   V
Sbjct: 179 DAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGV 223

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  157 bits (398), Expect = 6e-43
 Identities = 72/406 (17%), Positives = 128/406 (31%), Gaps = 50/406 (12%)

Query: 288 KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 347
           KI  +  L F DV L P++S++    EV +    T          +P +++ MDTV   +
Sbjct: 2   KITKE-ALTFDDVSLIPRKSSVLPS-EVSLKTQLTK----NISLNIPFLSSAMDTVTESQ 55

Query: 348 MAKHLAKHGLFTTIHKYYTLEEWKAF--AVQNPDVIKHVADGGCTSPGDVAKAMGAGADF 405
           MA  +AK G    IHK  ++E  +     V+     K +   G T+     +   A    
Sbjct: 56  MAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNE-QKPEIFTAKQHL 114

Query: 406 VMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADF- 464
                      +           F     D+N+ L                     A   
Sbjct: 115 EKSDAYKNAEHKE---------DFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVD 165

Query: 465 VMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTVQVPYR 524
           +++     GH     ELI+K   K      ++      + A  +    A   K    P  
Sbjct: 166 ILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGS 225

Query: 525 GDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVND------------T 572
                 V  +     +A   V     +        I     +    D             
Sbjct: 226 ICTTRIVAGVGVPQITAICDV----YEACNNTNICIIADGGIRFSGDVVKAIAAGADSVM 281

Query: 573 VQDILGGLRSACTYV------------GASKLKELPRRAT---FIRCTAQLNNVAAEGKT 617
           + ++  G + + +              G   +  + R +    F     +   +  EG  
Sbjct: 282 IGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIE 341

Query: 618 VQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA 663
             VPY G + D +  + GGL S   Y+GA+ + +L   + F++ + 
Sbjct: 342 GMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISH 387

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  132 bits (333), Expect = 3e-34
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 11/269 (4%)

Query: 12  KIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFE 71
           KI  +  L F DV L P++S++    EV +    T          +P +++ MDTV   +
Sbjct: 2   KITKE-ALTFDDVSLIPRKSSVLPS-EVSLKTQLTK----NISLNIPFLSSAMDTVTESQ 55

Query: 72  MAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPE 131
           MA  +AK G    IHK  ++E       +   V  +    +  +  D    ++       
Sbjct: 56  MAIAIAKEGGIGIIHKNMSIEAQ---RKEIEKVKTYKFQKTINTNGDTN--EQKPEIFTA 110

Query: 132 IEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP 191
            +++    A    +   DF    +++  K  + A   +  + +E +       + + +  
Sbjct: 111 KQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVID 170

Query: 192 GSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTR 251
            +   +    +       ++ +    AGN+VT E   +LI  GAD +KVGIGPGS+CTTR
Sbjct: 171 SAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR 230

Query: 252 LKTGVGYPQFSAVLECADAAHGLGGHIIS 280
           +  GVG PQ +A+ +  +A +     II+
Sbjct: 231 IVAGVGVPQITAICDVYEACNNTNICIIA 259

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 32/249 (12%), Positives = 75/249 (30%), Gaps = 35/249 (14%)

Query: 21  FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV-------GTFEMA 73
             D+          +  +VDI+          +    PI    M              +A
Sbjct: 5   LDDITFVHVSLPDLALEQVDISTKIG----ELSSS-SPIFINAMTGGGGKLTYEINKSLA 59

Query: 74  KHLAKHGLFTTIHKYYTLEEWKAFA-------VQNPDVIKHV------AVSSGISAKDLA 120
           +  ++ G+   +    +  +  +          +NP+ +           +    A ++ 
Sbjct: 60  RAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMI 119

Query: 121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVII--AGNVVTGEMVEELI 178
           G   +   L  I+ I +   +      +  + +I       VI+   G  ++     +L 
Sbjct: 120 GANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLY 179

Query: 179 LSGADVIKVGIGPG----SVCTTRLKNKTSDFFL--IQFYSCIPQAGNVVTGEMV--EEL 230
            +GA  + +G   G     +   R + + S F    I   + + +  +      +     
Sbjct: 180 EAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGG 239

Query: 231 ILSGADVIK 239
           +    DV K
Sbjct: 240 LQDALDVAK 248

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 42/325 (12%), Positives = 91/325 (28%), Gaps = 38/325 (11%)

Query: 297 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV-------GTFEMA 349
             D+          +  +VDI+          +    PI    M              +A
Sbjct: 5   LDDITFVHVSLPDLALEQVDISTKIG----ELSSS-SPIFINAMTGGGGKLTYEINKSLA 59

Query: 350 KHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLG 409
           +  ++ G+   +    +  +  +  +    V K   +G   +            + V + 
Sbjct: 60  RAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMI 119

Query: 410 GMFA--GHDQSGGELTNIEYMFFP---------LVGDMNSYLGGVVDGGCTSPGDVAKAM 458
           G  A   H     E+   E              +   ++  +     G   S     K  
Sbjct: 120 GANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLY 179

Query: 459 GAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKT 518
            AGA  V +GG    +      L  +        +G+S+  ++ +               
Sbjct: 180 EAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF--------PA 231

Query: 519 VQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILG 578
             +   G +     D+   +    +  G +               +    + + +Q IL 
Sbjct: 232 STMIASGGLQ-DALDVAKAIALGASCTGMA------GHFLKALTDSGEEGLLEEIQLILE 284

Query: 579 GLRSACTYVGASKLKELPRRATFIR 603
            L+   T +GA  + +L +    I+
Sbjct: 285 ELKLIMTVLGARTIADLQKAPLVIK 309

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 45/325 (13%), Positives = 78/325 (24%), Gaps = 39/325 (12%)

Query: 297 FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG--TFEMAKHLAK 354
            +   LR +     + SEVD+T  F     GKT +  P +   M         +   LA+
Sbjct: 6   LEGFRLRYQALAGLALSEVDLTTPFL----GKTLK-APFLIGAMTGGEENGERINLALAE 60

Query: 355 ----------HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVA-------K 397
                      G    + +              P  +     G                +
Sbjct: 61  AAEALGVGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVE 120

Query: 398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKA 457
            + A A    +  +     +   +   +      L+      +   V  G +        
Sbjct: 121 MLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLS-REAALAL 179

Query: 458 MGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGK 517
                  V + G          E +     +      +   TA                 
Sbjct: 180 RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREV------LP 233

Query: 518 TVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDIL 577
            + +   G V  T  D    L      +  +       R            V   + D L
Sbjct: 234 HLPLVASGGVY-TGTDGAKALALGADLLAVA-------RPLLRPALEGAERVAAWIGDYL 285

Query: 578 GGLRSACTYVGASKLKELPRRATFI 602
             LR+A   +GA   KE   R   +
Sbjct: 286 EELRTALFAIGARNPKEARGRVERV 310

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 42/265 (15%), Positives = 76/265 (28%), Gaps = 51/265 (19%)

Query: 21  FKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG--TFEMAKHLAK 78
            +   LR +     + SEVD+T  F     GKT +  P +   M         +   LA+
Sbjct: 6   LEGFRLRYQALAGLALSEVDLTTPFL----GKTLK-APFLIGAMTGGEENGERINLALAE 60

Query: 79  ----------HGLFTTIHKYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAA 128
                      G    + +              P  +    +      +   G  ++L  
Sbjct: 61  AAEALGVGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRY--GRDDLLRL 118

Query: 129 LPEIEYICLDVANGYTQ--------TFVDFVRRIREMY----PKHVIIAGNVVTGEMVEE 176
           +  +E   L       Q         F   V R+ E+     P  V   G+ ++ E    
Sbjct: 119 VEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALA 178

Query: 177 LILSGADVI-------------KVGIGPGSVCTTRLKN-------KTSDFFLIQFYSCIP 216
           L       +             +  +  G V    L            +   +  +  + 
Sbjct: 179 LRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLV 238

Query: 217 QAGNVVTGEMVEELILSGADVIKVG 241
            +G V TG    + +  GAD++ V 
Sbjct: 239 ASGGVYTGTDGAKALALGADLLAVA 263

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 332 GVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH------VA 385
              ++ A++ T     +A       + TT+  Y      +A                 +A
Sbjct: 129 PNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIA 188

Query: 386 DGGCTSPGDVAKAMGAGADFVMLGG 410
           +G   SP +  K    G   +++GG
Sbjct: 189 EGKIHSPEEAKKINDLGVAGIVVGG 213

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 4/112 (3%)

Query: 358 FTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQ 417
            T   ++  L+               +     ++  +   A  AG DFV           
Sbjct: 106 CTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTL----SGY 161

Query: 418 SGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469
           +             +     + +  + +G   SP +  K    G   +++GG
Sbjct: 162 TPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGG 213

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 15/201 (7%)

Query: 50  SGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAF--AVQNPDVIKH 107
           S +   G P+ +     +    MAK   + G      +  ++ + K        P +I  
Sbjct: 18  SCQALPGEPLYSETGGIMP--LMAKAAQEAG--AVGIRANSVRDIKEIQAITDLP-IIGI 72

Query: 108 VAVSSGISAKDLAGLKEILAALPEIEY--ICLDVANGYT---QTFVDFVRRIREMYPKHV 162
           +          +      +  L  +    I +D              F+R+++E YP + 
Sbjct: 73  IKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYP-NQ 131

Query: 163 IIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQ--AGN 220
           ++  ++ T +       +G D +   +   +  + +              + I     G 
Sbjct: 132 LLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGK 191

Query: 221 VVTGEMVEELILSGADVIKVG 241
           + + E  +++   G   I VG
Sbjct: 192 IHSPEEAKKINDLGVAGIVVG 212

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 1/113 (0%)

Query: 357 LFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHD 416
           L  T+ +       +  +                +  +   A   G D++          
Sbjct: 94  LDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSY 153

Query: 417 QSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGG 469
             G  L   ++ F   V   +     + +G   +P    + M  G    ++GG
Sbjct: 154 TQGQLLYQNDFQFLKDVL-QSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGG 205

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 334 PIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH---------V 384
             I A++ TV   + A  L    + TT+H Y +  + +     +   +K          +
Sbjct: 120 VEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVI 179

Query: 385 ADGGCTSPGDVAKAMGAGADFVMLGG 410
           A+G   +P    + M  G    ++GG
Sbjct: 180 AEGNVITPDMYKRVMDLGVHCSVVGG 205

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 12/194 (6%)

Query: 58  PIIAANMDTVGTF-EMAKHLAKHG-LFTTIHKYYTLEEWK-AFAVQNPDVIKHVAVSSGI 114
            +    + +     +MA    + G +    +    +   K    +    ++K     S +
Sbjct: 13  ALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDV 72

Query: 115 SAKDLAGLKEILAALPEIEYICLDVANG--YTQTFVDFVRRIREMYPKHVIIAGNVVTGE 172
                +   + L    + E I LD        +T  + V  IR   P +V I  ++ T E
Sbjct: 73  FITATSKEVDELIES-QCEVIALDATLQQRPKETLDELVSYIRTHAP-NVEIMADIATVE 130

Query: 173 MVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQ---FYSCIPQ--AGNVVTGEMV 227
             +     G D I   +   +  T       +DF  ++             GNV+T +M 
Sbjct: 131 EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMY 190

Query: 228 EELILSGADVIKVG 241
           + ++  G     VG
Sbjct: 191 KRVMDLGVHCSVVG 204

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 7e-05
 Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 370 WKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMF 429
           WK            +   G     DV KA   G   V+L                +    
Sbjct: 235 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAET 294

Query: 430 FPLVGDMN--SYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMF 471
            P++   N    L   VDGG     DV KA+  GA  V LG  F
Sbjct: 295 MPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPF 338

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 384 VADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGV 443
           +   G  S  D  + +  GAD V+L                +        G        +
Sbjct: 225 LLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPV-----L 279

Query: 444 VDGGCTSPGDVAKAMGAGADFVMLGGMF 471
           +D G     D+ KA+  GA+ V+LG   
Sbjct: 280 IDSGFRRGSDIVKALALGAEAVLLGRAT 307

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 27/133 (20%)

Query: 362 HKYYTLEEWKAFAVQ----NPDV---IKHVADGGCTSPGDVAKAMG-AGADFVMLGGMFA 413
           H  Y++E+           NPD    +K V+  G    G +A  +  A AD +++ G   
Sbjct: 550 HDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGI---GTIAAGVAKANADIILISGNSG 606

Query: 414 GHDQSGGELTNIEYMFFPL---VGDMNSYLGG---------VVDGGCTSPGDVAKAMGAG 461
           G        T+I++   P    + +++  L             DGG  +  D+  A   G
Sbjct: 607 GTG--ASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLG 664

Query: 462 ADFVMLG--GMFA 472
           A+   +G   + A
Sbjct: 665 AEEFGIGTASLIA 677

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 27/133 (20%)

Query: 362 HKYYTLEEWKAFAVQ----NPDV---IKHVADGGCTSPGDVAKAMG-AGADFVMLGGMFA 413
           H  Y++E+           NP+    +K VA+ G    G +A  +  A AD + + G   
Sbjct: 577 HDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGI---GTIAAGVAKANADIIQISGHDG 633

Query: 414 GHDQSGGELTNIEYMFFPL---VGDMNSYLGG---------VVDGGCTSPGDVAKAMGAG 461
           G       L++I++   P    V +++  L             DGG  +  DV  A   G
Sbjct: 634 GTG--ASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMG 691

Query: 462 ADFVMLG--GMFA 472
           A+    G   M A
Sbjct: 692 AEEYGFGSIAMIA 704

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 328 KTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKH---- 383
           ++   +PII   + T    E+A      G+  + H    L+E  A      +V+      
Sbjct: 213 QSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGK 272

Query: 384 ---VADGGCTSPGDVAKAMGAGADFVMLGGMF 412
                DGG  +  DV KA+  GA  + LG   
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPI 304

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSG-ADVIKVG 188
            + +V+ ++++  K V+  G     E + E++  G AD+I   
Sbjct: 279 TIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCA 321

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	671
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	100.0
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	100.0
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	100.0
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	100.0
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	100.0
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	100.0
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	100.0
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	100.0
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	100.0
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	100.0
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	100.0
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	100.0
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.77
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	99.73
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.43
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	98.77
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	98.76
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	98.74
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	98.61
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	98.49
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	98.42
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	98.24
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.19
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.07
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	97.96
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	97.95
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	97.72
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	97.57
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.43
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.01
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	96.56
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	96.47
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	96.17
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	96.09
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	95.95
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	95.75
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	95.67
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	95.65
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	95.42
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	95.34
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	95.13
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	95.09
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	94.23
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	94.2
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	94.18
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	94.16
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	93.68
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	93.27
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	92.31
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	92.3
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	91.83
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.89
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	90.1
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	89.04
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	88.71
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	88.45
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	88.29
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	88.07
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	87.89
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	87.24
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	87.03
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	86.53
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	86.2
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	86.05
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	85.57
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	85.38
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	85.33
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	84.67
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	84.27
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	83.75
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	82.61
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	82.2
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	82.12
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	82.04
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	80.92

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=100.00  E-value=4.5e-76  Score=632.81  Aligned_cols=329  Identities=20%  Similarity=0.206  Sum_probs=280.8

Q ss_pred             eeeccccCCCceeeeecCCCccCC-CCcccceeeeeec---cCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEcc
Q psy3862         288 KIINDIKLDFKDVMLRPKRSTLKS-RSEVDITRTFTFR---NSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK  363 (671)
Q Consensus       288 ~i~~~~~l~fdDVll~P~rst~~s-r~eVdl~~~l~~~---~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr  363 (671)
                      ||.++.+||||||||+|+|||++| |+||||+|+|+|.   +++.+++++|||||||||||+++||++|+++||||+|||
T Consensus         2 ~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~GglgvihR   81 (362)
T d1pvna1           2 KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFG   81 (362)
T ss_dssp             EECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECC
T ss_pred             ccccCCCCCccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEEee
Confidence            678899999999999999999997 9999999998753   556789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhcCcccccceeeecccCh--hhHHHHHHcCCcEEEEccccccccccccccccccccccc-ccccccccc
Q psy3862         364 YYTLEEWKAFAVQNPDVIKHVADGGCTSP--GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFP-LVGDMNSYL  440 (671)
Q Consensus       364 ~~~~e~~~~~v~~~~~~~~~v~~~~~~~~--~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~-~~~~~~~~~  440 (671)
                      |+++|+|.+++.+.++....+...+...+  ++.+.++++|+|+|||| ++|||++++.++++.++..+| .+       
T Consensus        82 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~ID-vAhG~~~~v~~~i~~ir~~~~~~~-------  153 (362)
T d1pvna1          82 SQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCID-SSDGFSEWQKITIGWIREKYGDKV-------  153 (362)
T ss_dssp             SSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEEC-CSCCCBHHHHHHHHHHHHHHGGGS-------
T ss_pred             cCCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEeec-hhccchhHHHHHHHHHHHhhccce-------
Confidence            99999999999876543222333333322  44566789999999999 999999999998877765442 22       


Q ss_pred             CceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccccccCCceE
Q psy3862         441 GGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYRAAEGKTV  519 (671)
Q Consensus       441 ~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~~~~G~~v  519 (671)
                        .|++|||+|+++++ ++++|||+|+||+ ||| |+||||.+        +|+|+||+||+.+|+.++.+|..+.|+++
T Consensus       154 --~IiAGNVaT~e~~~~L~~aGaD~vkVGI-G~G-s~CTTr~~--------tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v  221 (362)
T d1pvna1         154 --KVGAGNIVDGEGFRYLADAGADFIKIGI-GGG-SICITREQ--------KGIGRGQATAVIDVVAERNKYFEETGIYI  221 (362)
T ss_dssp             --CEEEEEECSHHHHHHHHHHTCSEEEECS-SCS-TTBCHHHH--------TCBCCCHHHHHHHHHHHHHHHHHHHSEEC
T ss_pred             --eeecccccCHHHHHHHHHhCCcEEEecc-ccc-ccccchhh--------hccCCchHHHHHHHHHHHHHhhhhcccCC
Confidence              36899999999999 6799999999996 999 99999875        68999999999999998888866666666


Q ss_pred             e------eecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeec
Q psy3862         520 Q------VPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVG  588 (671)
Q Consensus       520 ~------i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~G  588 (671)
                      +      |+++|||+|||+     ||||++|||++|+||+.++.                         +| +.+|.|||
T Consensus       222 ~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~-------------------------~g-~~~k~~~G  275 (362)
T d1pvna1         222 PVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTI-------------------------NG-SVMKEYWG  275 (362)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEE-------------------------TT-EEEEEEEC
T ss_pred             ceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceee-------------------------cc-ceeeeeec
Confidence            5      699999999999     99999999999999995331                         23 46789999


Q ss_pred             cccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         589 ASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       589 m~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      |+|..||.+++....  ...++++|||+++.||||||++++|++|+|||||+|+|+|+++|+|||+|++|+|+|.+
T Consensus       276 m~S~~a~~~~~~~~~--~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~~f~~~t~~  349 (362)
T d1pvna1         276 EGSSRARNWQRYDLG--GKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVSSV  349 (362)
T ss_dssp             TTSTTTCCGGGGCSS--SCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCEEEEBCHH
T ss_pred             ccccccccccccccc--ccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECcc
Confidence            999999875432111  23367899999999999999999999999999999999999999999999999999975

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=100.00  E-value=8.5e-75  Score=628.04  Aligned_cols=319  Identities=23%  Similarity=0.344  Sum_probs=249.1

Q ss_pred             ccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHH
Q psy3862         291 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW  370 (671)
Q Consensus       291 ~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~  370 (671)
                      ...+||||||||+|+|||+.| +||||+|+|+    +++++++|||||||||||+++||++|+|+||||+||||+++|+|
T Consensus         4 ~~~~LtfDDVlLvP~~st~~~-~~vdl~~~~t----~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q   78 (388)
T d1eepa_           4 TKEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ   78 (388)
T ss_dssp             CCCCCCGGGEEECCCCCCSCG-GGCCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHH
T ss_pred             cccCCCcccEEEeCCCCCCCH-HHceeeEEee----CCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCCCHHHH
Confidence            356899999999999999999 5999999997    47899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcc--------------------------------------------ccc------ceeeecccCh---hhHHH
Q psy3862         371 KAFAVQNPD--------------------------------------------VIK------HVADGGCTSP---GDVAK  397 (671)
Q Consensus       371 ~~~v~~~~~--------------------------------------------~~~------~v~~~~~~~~---~~~~~  397 (671)
                      .+++++++.                                            ...      .+.++.++.+   ++...
T Consensus        79 ~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~  158 (388)
T d1eepa_          79 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEE  158 (388)
T ss_dssp             HHHHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHH
T ss_pred             HHHHHHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHH
Confidence            998865311                                            000      2455555554   55666


Q ss_pred             HHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCcc
Q psy3862         398 AMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQ  476 (671)
Q Consensus       398 l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~  476 (671)
                      |+++|+|+|||| ++|||+++++++++.++..||.+.         |++|||+|++.++ ++++|||+||||+ ||| |+
T Consensus       159 L~~aG~D~ivID-~AhG~s~~~~~~i~~ik~~~~~v~---------vIaGNV~T~e~a~~L~~~GaD~VkVGi-GpG-s~  226 (388)
T d1eepa_         159 LVKAHVDILVID-SAHGHSTRIIELIKKIKTKYPNLD---------LIAGNIVTKEAALDLISVGADCLKVGI-GPG-SI  226 (388)
T ss_dssp             HHHTTCSEEEEC-CSCCSSHHHHHHHHHHHHHCTTCE---------EEEEEECSHHHHHHHHTTTCSEEEECS-SCS-TT
T ss_pred             HHhhccceeeee-ccccchHHHHHHHHHHHHHCCCCc---------eeeccccCHHHHHHHHhcCCCeeeecc-ccc-cc
Confidence            799999999999 999999999999998888888774         6889999999999 6799999999996 999 99


Q ss_pred             CCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcc
Q psy3862         477 SGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGAS  548 (671)
Q Consensus       477 ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~  548 (671)
                      ||||.+        +|+|+||+||+.+|+.++..+.   ++||.   |+++|||+|||+     ||||++|||++|+||+
T Consensus       227 CtTr~~--------~GvG~pq~sai~~~~~~~~~~~vpiIADGG---i~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~  295 (388)
T d1eepa_         227 CTTRIV--------AGVGVPQITAICDVYEACNNTNICIIADGG---IRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE  295 (388)
T ss_dssp             SHHHHH--------HCCCCCHHHHHHHHHHHHTTSSCEEEEESC---CCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSC
T ss_pred             cccccc--------cccCcchHHHHHHHHHHhccCCceEEeccc---cCcCCceeeeEEeccceeecchhhhcccCCCce
Confidence            999975        6899999999999876554331   34443   799999999999     9999999999999998


Q ss_pred             cccccCCcceEEEecccccccccchhhhcccccccceeeccccccccccccccchhcc----ccccccCCCceEeccccc
Q psy3862         549 KLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA----QLNNVAAEGKTVQVPYRG  624 (671)
Q Consensus       549 ~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~----~~~~~~~eG~~~~v~~kG  624 (671)
                      .+.                         .+| +.+|.||||+|..||++ ++..||..    ..++++|||++..|||||
T Consensus       296 ~~~-------------------------~~g-~~~k~~~gm~S~~a~~~-g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G  348 (388)
T d1eepa_         296 EII-------------------------YNG-KKFKSYVGMGSISAMKR-GSKSRYFQLENNEPKKLVPEGIEGMVPYSG  348 (388)
T ss_dssp             EEE-------------------------ETT-EEEEC-------------------------------------CEECCB
T ss_pred             EEE-------------------------eCC-cEeecccccccHHHHhc-cccccccccccccccccccCceEEEeCCCC
Confidence            422                         123 46789999999999975 45667754    235679999999999999


Q ss_pred             CHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         625 DVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       625 ~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                      +|+++|.||+|||||+|+|+|+++|+|||+|++|||||+.
T Consensus       349 ~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~~  388 (388)
T d1eepa_         349 KLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS  388 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred             CHHHHHHHHHHHHHHHhhccCcccHHHHhhCCEEEEECCC
Confidence            9999999999999999999999999999999999999974

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=4.3e-72  Score=600.83  Aligned_cols=318  Identities=26%  Similarity=0.353  Sum_probs=272.4

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      +.+||||||||+|+|||+.| +||||+|+|+    +++++++||||||||||++++||++|+++||||+||||+++|+|.
T Consensus         9 r~~l~fdDVllvP~~st~~s-~~vdl~~~it----~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e~~   83 (365)
T d1zfja1           9 KKGYTFDDVLLIPAESHVLP-NEVDLKTKLA----DNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQA   83 (365)
T ss_dssp             CCCCCGGGEEECCCCCCSCG-GGCCCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             hccCCcceEEEeCCCCCcCH-hHceeeEEee----CCcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccCHHHHH
Confidence            46899999999999999999 5999999997    578999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccc--ccceeeecccCh---hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeec
Q psy3862         372 AFAVQNPDV--IKHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDG  446 (671)
Q Consensus       372 ~~v~~~~~~--~~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  446 (671)
                      +++.+..+.  -..++++.++++   ++...++++|+|+|||| ++|||+.+..++++.++..||.+         .|++
T Consensus        84 ~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID-~A~G~s~~~~~~i~~ik~~~~~~---------~iIa  153 (365)
T d1zfja1          84 EEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVID-TAHGHSAGVLRKIAEIRAHFPNR---------TLIA  153 (365)
T ss_dssp             HHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEEC-CSCTTCHHHHHHHHHHHHHCSSS---------CEEE
T ss_pred             HHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCCEEEEE-CCcccccchhHHHHHHHhhCCCc---------ceee
Confidence            998764332  224566666665   44566689999999999 99999999999988888777766         4689


Q ss_pred             cccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeee
Q psy3862         447 GCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVP  522 (671)
Q Consensus       447 G~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~  522 (671)
                      |||+|++.++ ++++|||+|+||+ ||| |.||||.+        +|+|+||+||+.+|+.++++|.   ++||.   |+
T Consensus       154 GNV~T~e~a~~L~~aGaD~VkVGi-G~G-s~CTTr~~--------tGvGvPq~sai~~~~~~~~~~~~~iIADGG---i~  220 (365)
T d1zfja1         154 GNIATAEGARALYDAGVDVVKVGI-GPG-SICTTRVV--------AGVGVPQVTAIYDAAAVAREYGKTIIADGG---IK  220 (365)
T ss_dssp             EEECSHHHHHHHHHTTCSEEEECS-SCC-TTBCHHHH--------TCCCCCHHHHHHHHHHHHHHTTCEEEEESC---CC
T ss_pred             cccccHHHHHHHHhcCCceEEeee-ccc-ccccCcce--------eeeeccchhHHHHHHHHHHhCCceEEecCC---cC
Confidence            9999999999 6799999999996 999 99999875        6899999999999988777663   45554   79


Q ss_pred             cCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccccccc
Q psy3862         523 YRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPR  597 (671)
Q Consensus       523 ~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~  597 (671)
                      ++|||+|||+     ||||++|||++|+||+.+.                         .+| +.+|.||||+|..||++
T Consensus       221 ~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~-------------------------~~g-~~~k~~~Gm~s~~a~~~  274 (365)
T d1zfja1         221 YSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEI-------------------------YQG-RKYKTYRGMGSIAAMKK  274 (365)
T ss_dssp             SHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEE-------------------------ETT-EEEEEEECTTSHHHHCC
T ss_pred             cchhhhhhhhccCCEEEecchhccccCCCCcEEE-------------------------ECC-eEeeecCCcccHhhhhc
Confidence            9999999999     9999999999999998422                         123 46789999999999874


Q ss_pred             ccccchhc----cccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEeccc
Q psy3862         598 RATFIRCT----AQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQ  664 (671)
Q Consensus       598 ~~~~~r~~----~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt~q  664 (671)
                       ++..||.    ...++++|||++..||||||+++++.||+|||||+|+|+|+++|+|||+|++|||||++
T Consensus       275 -~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~~~fv~vt~~  344 (365)
T d1zfja1         275 -GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQFVEMSGA  344 (365)
T ss_dssp             ---------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCEEECCHH
T ss_pred             -ccccccccccccccccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhCCEEEEECcc
Confidence             3445553    23467899999999999999999999999999999999999999999999999999974

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1e-71  Score=599.58  Aligned_cols=320  Identities=24%  Similarity=0.343  Sum_probs=265.7

Q ss_pred             eeecc-ccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCC
Q psy3862         288 KIIND-IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYT  366 (671)
Q Consensus       288 ~i~~~-~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~  366 (671)
                      +|++. .+||||||||+|+|||++|| ||||+|+|+    +++++++||||||||||++++||++|+++||||+||||++
T Consensus         5 ~~~~~~k~ltfdDVlLvP~~sti~sr-dVdls~~~~----~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~   79 (368)
T d2cu0a1           5 KLEKAIKGYTFDDVLLIPQATEVEPK-DVDVSTRIT----PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMG   79 (368)
T ss_dssp             HHHTCCCCCCGGGEEECCCCCSSCST-TCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSC
T ss_pred             HHHHHHhcCCcccEEEeCCCCcCchh-hceeeEEee----CCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEecccCC
Confidence            45444 46999999999999999997 999999998    5789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccc----------ccceeeecccCh---hhHHHHHHcCCcEEEEccccccccccccccccccccccccc
Q psy3862         367 LEEWKAFAVQNPDV----------IKHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLV  433 (671)
Q Consensus       367 ~e~~~~~v~~~~~~----------~~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~  433 (671)
                      +|+|+++++++++.          -..+..+.++++   ++...++++|+|+|||| ++|||+++..+.++.++..||. 
T Consensus        80 ~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID-~A~Gh~~~~i~~lK~ir~~~~~-  157 (368)
T d2cu0a1          80 IEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVD-TAHAHNLKAIKSMKEMRQKVDA-  157 (368)
T ss_dssp             HHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEE-CSCCCCHHHHHHHHHHHHTCCS-
T ss_pred             HHHHHHHHHhhhhhhhccccccccCccEEEEeccChHHHHHHHHHHHcCCCEEEec-Ccccchhhhhhhhhhhhhhccc-
Confidence            99999999764221          113444445555   44566689999999999 9999999988887776666552 


Q ss_pred             cccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc--
Q psy3862         434 GDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY--  511 (671)
Q Consensus       434 ~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y--  511 (671)
                               .+++|||+|+++++.+ +|||+|+||| ||| |+||||.+        +|+|+||++|+.+|+..+.+|  
T Consensus       158 ---------~vIaGNVaT~e~~~~l-~gaD~VkVGI-G~G-s~CTTr~~--------tGvG~Pq~sAi~e~~~~~~~~~~  217 (368)
T d2cu0a1         158 ---------DFIVGNIANPKAVDDL-TFADAVKVGI-GPG-SICTTRIV--------AGVGVPQITAVAMVADRAQEYGL  217 (368)
T ss_dssp             ---------EEEEEEECCHHHHTTC-TTSSEEEECS-SCS-TTBCHHHH--------TCCCCCHHHHHHHHHHHHHHHTC
T ss_pred             ---------ceeeccccCHHHHHhh-hcCcceeecc-cCc-ccccchhh--------cccccchHHHHHHHHHHHhccCC
Confidence                     3467999999998754 6999999996 999 99999875        689999999999998766554  


Q ss_pred             -cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccce
Q psy3862         512 -RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACT  585 (671)
Q Consensus       512 -~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~  585 (671)
                       .++||.   |+++|||+|||+     ||||++|||++|+||+.+.                         .+| +++|.
T Consensus       218 ~iiADGG---i~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~-------------------------~~g-~~~k~  268 (368)
T d2cu0a1         218 YVIADGG---IRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVI-------------------------ING-RKYKQ  268 (368)
T ss_dssp             EEEEESC---CCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEE-------------------------ETT-EEEEE
T ss_pred             eeEecCC---CCcCChhheeeeeccceeeccchhccccccCCceEe-------------------------eCC-eEccc
Confidence             245554   799999999999     9999999999999998422                         224 46789


Q ss_pred             eeccccccccccccccchhcc----ccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEe
Q psy3862         586 YVGASKLKELPRRATFIRCTA----QLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRC  661 (671)
Q Consensus       586 y~Gm~s~~a~~~~~~~~r~~~----~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrv  661 (671)
                      ||||+|..+|.+. +..|+..    ..++.+|||++..||||||++++|++|+|||||+|+|+|+++|+|||+|++|+|+
T Consensus       269 ~~Gm~S~~a~~~~-~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~~~f~~v  347 (368)
T d2cu0a1         269 YRGMGSLGAMMKG-GAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVII  347 (368)
T ss_dssp             EECTTSHHHHTC-----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEEEC
T ss_pred             ccCcccccccccC-CcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhhCCEEEEE
Confidence            9999999988753 3344332    2245689999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy3862         662 TAQ  664 (671)
Q Consensus       662 t~q  664 (671)
                      |.+
T Consensus       348 t~a  350 (368)
T d2cu0a1         348 THA  350 (368)
T ss_dssp             CHH
T ss_pred             Ccc
Confidence            864

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=100.00  E-value=9.5e-70  Score=585.73  Aligned_cols=322  Identities=22%  Similarity=0.249  Sum_probs=269.9

Q ss_pred             eeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHH
Q psy3862         289 IINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLE  368 (671)
Q Consensus       289 i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e  368 (671)
                      ++...+||||||||+|+|||++|| ||||+|+|+    +++++++|||+||||||++++||++|+++||||+||||+++|
T Consensus         8 ~~~~~~LtfdDVllvP~~st~~sr-~V~l~t~lt----~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~~e   82 (378)
T d1jr1a1           8 FNCGDGLTYNDFLILPGYIDFTAD-QVDLTSALT----KKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPE   82 (378)
T ss_dssp             TSSCCCCCGGGEEECCCCCCSCGG-GCBCCEESS----SSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSCHH
T ss_pred             hccCCCCCcccEEEeCCCCCCcHH-HceeeeEEE----CCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcCCCCHH
Confidence            456779999999999999999996 999999997    468999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcccc----------c--ceeeecccChhh---HHHHHHcCCcEEEEccccccccccccccccccccccccc
Q psy3862         369 EWKAFAVQNPDVI----------K--HVADGGCTSPGD---VAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLV  433 (671)
Q Consensus       369 ~~~~~v~~~~~~~----------~--~v~~~~~~~~~~---~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~  433 (671)
                      +|.++++++++..          .  .+.++.++.+++   .+.++++|+|++||| ++|||++++++.++.++.++|.+
T Consensus        83 ~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id-~a~g~~~~~~~~i~~ik~~~~~~  161 (378)
T d1jr1a1          83 FQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLD-SSQGNSIFQINMIKYMKEKYPNL  161 (378)
T ss_dssp             HHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEEC-CSSCCSHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHhhccceEeee-ccCccchhhHHHHHHHHHHCCCC
Confidence            9999998753321          0  244555555433   444588999999999 99999999999988888887766


Q ss_pred             cccccccCceeeccccCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc
Q psy3862         434 GDMNSYLGGVVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR  512 (671)
Q Consensus       434 ~~~~~~~~~~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~  512 (671)
                               .+++|||+|++.++ ++++|||+|+||+ |+| +.||||.+        +|+|+||++|+.+|+.++.+|.
T Consensus       162 ---------~iIaGnVaT~e~a~~L~~aGAD~VkVGi-G~G-s~ctTr~~--------tGvG~pq~sai~~~~~~a~~~~  222 (378)
T d1jr1a1         162 ---------QVIGGNVVTAAQAKNLIDAGVDALRVGM-GCG-SICITQEV--------LACGRPQATAVYKVSEYARRFG  222 (378)
T ss_dssp             ---------EEEEEEECSHHHHHHHHHHTCSEEEECS-SCS-TTBCHHHH--------HCCCCCHHHHHHHHHHHHGGGT
T ss_pred             ---------ceeecccccHHHHHHHHHhCCCEEeecc-ccc-cccccccc--------cccCcccchhhhHHHHhhcccC
Confidence                     46899999999999 6799999999996 999 99999875        6899999999999988776653


Q ss_pred             ---ccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccc
Q psy3862         513 ---AAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSAC  584 (671)
Q Consensus       513 ---~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k  584 (671)
                         +++|.   |+++|||+|||+     ||||++||+++|+||+.+..                         +| +.+|
T Consensus       223 vpIIADGG---i~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~-------------------------~g-~~~k  273 (378)
T d1jr1a1         223 VPVIADGG---IQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFS-------------------------DG-IRLK  273 (378)
T ss_dssp             CCEEEESC---CCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEES-------------------------SS-CEEE
T ss_pred             Cceecccc---cccCCceeeEEEeecceeeecceeeeeecccCcccee-------------------------cC-ceee
Confidence               45554   799999999999     99999999999999995331                         23 3578


Q ss_pred             eeecccccccccccc-ccchhcccc-ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCccccccccc-----ccE
Q psy3862         585 TYVGASKLKELPRRA-TFIRCTAQL-NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR-----RAT  657 (671)
Q Consensus       585 ~y~Gm~s~~a~~~~~-~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~-----~a~  657 (671)
                      .||||+|..||++.. +..||+... +.++|||+++.||||||++++|.+|+|||||+|+|+|+++|+|||+     +++
T Consensus       274 ~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~  353 (378)
T d1jr1a1         274 KYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK  353 (378)
T ss_dssp             EEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSC
T ss_pred             eccccchhhhhhcccchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHhhhccCCce
Confidence            999999999998764 567887654 5679999999999999999999999999999999999999999998     899


Q ss_pred             EEEeccc
Q psy3862         658 FIRCTAQ  664 (671)
Q Consensus       658 Fvrvt~q  664 (671)
                      |+|+|.+
T Consensus       354 f~~~t~~  360 (378)
T d1jr1a1         354 FEKRTSS  360 (378)
T ss_dssp             EEECCHH
T ss_pred             EEEEChh
Confidence            9999975

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-68  Score=568.59  Aligned_cols=316  Identities=28%  Similarity=0.391  Sum_probs=258.8

Q ss_pred             cccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHH
Q psy3862         292 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK  371 (671)
Q Consensus       292 ~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~  371 (671)
                      ..+||||||||+|+|||+.|| +|||+|+|+    +.+++++|||+||||||++++||++|+++||||+|||++++|+|.
T Consensus         2 ~~~LtfdDVllvP~~s~~~sr-~vdl~t~lt----~~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~~e~~~   76 (330)
T d1vrda1           2 KEALTFDDVLLVPQYSEVLPK-DVKIDTRLT----RQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQA   76 (330)
T ss_dssp             CCCCCGGGEEECCCCCCCCGG-GSCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHH
T ss_pred             CCccccccEEEeCCCCCcccc-cceEEEEEe----cCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccchhhhH
Confidence            358999999999999999996 899999997    468999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcccccceeeecccCh---hhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccc
Q psy3862         372 AFAVQNPDVIKHVADGGCTSP---GDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGC  448 (671)
Q Consensus       372 ~~v~~~~~~~~~v~~~~~~~~---~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~  448 (671)
                      +++.+.++.-..+.++.++++   ++++.++++|+|+|||| ++|||+.+..++++.++..||.+         .|++||
T Consensus        77 ~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId-~A~G~~~~~~~~ik~ik~~~~~~---------~viaGn  146 (330)
T d1vrda1          77 RQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVID-TAHGHSRRVIETLEMIKADYPDL---------PVVAGN  146 (330)
T ss_dssp             HHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEC-CSCCSSHHHHHHHHHHHHHCTTS---------CEEEEE
T ss_pred             HHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEEe-cCCCCchhHHHHHHHHHHhCCCC---------CEEeec
Confidence            998876655445666666665   44566689999999999 99999999999988888877766         468899


Q ss_pred             cCchhHHH-HHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc---ccCCceEeeecC
Q psy3862         449 TSPGDVAK-AMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR---AAEGKTVQVPYR  524 (671)
Q Consensus       449 v~t~~~a~-~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~---~~~G~~v~i~~~  524 (671)
                      |.|++.++ ++++|||+|+||+ |+| |+||||..        +|+|+||++|+.+|+.++..+.   +++|.   |+++
T Consensus       147 V~t~~~a~~l~~~GaD~v~VGi-g~G-s~ctt~~~--------~G~g~p~~sai~~~~~~~~~~~vpvIAdGG---i~~~  213 (330)
T d1vrda1         147 VATPEGTEALIKAGADAVKVGV-GPG-SICTTRVV--------AGVGVPQLTAVMECSEVARKYDVPIIADGG---IRYS  213 (330)
T ss_dssp             ECSHHHHHHHHHTTCSEEEECS-SCS-TTCHHHHH--------HCCCCCHHHHHHHHHHHHHTTTCCEEEESC---CCSH
T ss_pred             hhHHHHHHHHHHcCCCEEeecc-ccC-ccccccce--------eccccccchhHHHHHHHHHhcCceEEecCC---cccC
Confidence            99999999 5699999999996 999 99999875        6899999999999987665542   45553   7999


Q ss_pred             CCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccceeecccccccccccc
Q psy3862         525 GDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRA  599 (671)
Q Consensus       525 Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~  599 (671)
                      |||+|||+     ||||++||+++|||++.+.                         .+| +.+|.||||+|..+|.+ +
T Consensus       214 gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~-------------------------~~g-~~~k~~~g~~s~~~~~~-~  266 (330)
T d1vrda1         214 GDIVKALAAGAESVMVGSIFAGTEEAPGETIL-------------------------YQG-RKYKAYRGMGSLGAMRS-G  266 (330)
T ss_dssp             HHHHHHHHTTCSEEEESHHHHTBTTSSSEEEE-------------------------ETT-EEEEECBCCC---------
T ss_pred             CchheeeeccCceeeecchheeecccCccEEE-------------------------ECC-ceeeecccccccccccc-C
Confidence            99999999     9999999999999998422                         224 46789999999987753 4


Q ss_pred             ccchhcccc-ccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEEEec
Q psy3862         600 TFIRCTAQL-NNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT  662 (671)
Q Consensus       600 ~~~r~~~~~-~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fvrvt  662 (671)
                      +.+||..+. ++++|||++..||||||++++|++|.|||||+|+|+|+++|+|||++++|||||
T Consensus       267 ~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~~fvrvt  330 (330)
T d1vrda1         267 SADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKAVFVKIT  330 (330)
T ss_dssp             -----------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHCCEEECC
T ss_pred             chhhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcCCEEEEeC
Confidence            556776543 568999999999999999999999999999999999999999999999999997

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=100.00  E-value=5.4e-59  Score=503.90  Aligned_cols=324  Identities=36%  Similarity=0.614  Sum_probs=263.5

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ..++||||||+|+|+++++.| ++|||+++|+    ++++|++||++||||+|++.+||++|++.||||+||+||++|+|
T Consensus         4 ~~~~LtfDDVlLvP~~st~~~-~~vdl~~~~t----~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q   78 (388)
T d1eepa_           4 TKEALTFDDVSLIPRKSSVLP-SEVSLKTQLT----KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ   78 (388)
T ss_dssp             CCCCCCGGGEEECCCCCCSCG-GGCCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHH
T ss_pred             cccCCCcccEEEeCCCCCCCH-HHceeeEEee----CCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCCCHHHH
Confidence            457999999999999999987 6999999998    78999999999999999999999999999999999999999998


Q ss_pred             HHhhhcC--------------------------------------------cccc----c--ceEEecCCChhhHHHHHH
Q psy3862          95 KAFAVQN--------------------------------------------PDVI----K--HVAVSSGISAKDLAGLKE  124 (671)
Q Consensus        95 ~~~i~~~--------------------------------------------p~~~----~--~~~v~~G~~~~d~~rl~~  124 (671)
                      .+++++.                                            |...    +  .++.+++++.++.+|+..
T Consensus        79 ~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~  158 (388)
T d1eepa_          79 RKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEE  158 (388)
T ss_dssp             HHHHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHH
T ss_pred             HHHHHHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHH
Confidence            7665310                                            1000    0  134567777888899999


Q ss_pred             HHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCC
Q psy3862         125 ILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTS  204 (671)
Q Consensus       125 l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~  204 (671)
                      ++++  ++|++++|.+|||+..++++++++++.||+..+|+                                       
T Consensus       159 L~~a--G~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIa---------------------------------------  197 (388)
T d1eepa_         159 LVKA--HVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA---------------------------------------  197 (388)
T ss_dssp             HHHT--TCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEE---------------------------------------
T ss_pred             HHhh--ccceeeeeccccchHHHHHHHHHHHHHCCCCceee---------------------------------------
Confidence            9998  88999999999999999999999998888755544                                       


Q ss_pred             cchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhh
Q psy3862         205 DFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTA  284 (671)
Q Consensus       205 ~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (671)
                                    |||+|++++++|+++|||+|||||||||+||||+++|+|+||+||+++|+++++++          
T Consensus       198 --------------GNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~----------  253 (388)
T d1eepa_         198 --------------GNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT----------  253 (388)
T ss_dssp             --------------EEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS----------
T ss_pred             --------------ccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccC----------
Confidence                          55556666666666667777999999999999999999999999999999999864          


Q ss_pred             ccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccC
Q psy3862         285 MAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKY  364 (671)
Q Consensus       285 ~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~  364 (671)
                                                                     ++||||                           
T Consensus       254 -----------------------------------------------~vpiIA---------------------------  259 (388)
T d1eepa_         254 -----------------------------------------------NICIIA---------------------------  259 (388)
T ss_dssp             -----------------------------------------------SCEEEE---------------------------
T ss_pred             -----------------------------------------------CceEEe---------------------------
Confidence                                                           467777                           


Q ss_pred             CCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCcee
Q psy3862         365 YTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV  444 (671)
Q Consensus       365 ~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  444 (671)
                                                                                                      
T Consensus       260 --------------------------------------------------------------------------------  259 (388)
T d1eepa_         260 --------------------------------------------------------------------------------  259 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCcccHHHHHhhcccccccc----------cc
Q psy3862         445 DGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEYR----------AA  514 (671)
Q Consensus       445 ~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~----------~~  514 (671)
                      +||+..+++++|+|.+|||+||+|.+.+|+.++|++.+..+|.++|.++||++..|+.+-  .+.+|.          .+
T Consensus       260 DGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g--~~~~~~~~~~~~~~~~~~  337 (388)
T d1eepa_         260 DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRG--SKSRYFQLENNEPKKLVP  337 (388)
T ss_dssp             ESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC---------------------------------
T ss_pred             ccccCcCCceeeeEEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhcc--cccccccccccccccccc
Confidence            899999999999999999999999999999999999999999999999999999999642  233332          46


Q ss_pred             CCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecc
Q psy3862         515 EGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA  564 (671)
Q Consensus       515 ~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~  564 (671)
                      +|..+.|+|.|++.+.+..++|++++++.++|+..++|++.+++|++++.
T Consensus       338 EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~  387 (388)
T d1eepa_         338 EGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISH  387 (388)
T ss_dssp             -----CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCC
T ss_pred             CceEEEeCCCCCHHHHHHHHHHHHHHHhhccCcccHHHHhhCCEEEEECC
Confidence            78888899999999999999999999999999999999999999998653

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=5.3e-57  Score=483.50  Aligned_cols=327  Identities=37%  Similarity=0.571  Sum_probs=285.2

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ...+|+||||+|+|+++++.| ++|||+++|+    +.+++++||+++|||+|++.+||++|++.||||+||+++++|+|
T Consensus         8 ~r~~l~fdDVllvP~~st~~s-~~vdl~~~it----~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e~   82 (365)
T d1zfja1           8 LKKGYTFDDVLLIPAESHVLP-NEVDLKTKLA----DNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQ   82 (365)
T ss_dssp             CCCCCCGGGEEECCCCCCSCG-GGCCCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHH
T ss_pred             hhccCCcceEEEeCCCCCcCH-hHceeeEEee----CCcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccCHHHH
Confidence            346899999999999999987 6999999998    78999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcc--cccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHH
Q psy3862          95 KAFAVQNPD--VIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGE  172 (671)
Q Consensus        95 ~~~i~~~p~--~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e  172 (671)
                      .+++.+..+  ....+.+++|++.++.+|+..++++  +++++++|.+|||+....+.++++|+.+|+..+++       
T Consensus        83 ~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~a--gvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIa-------  153 (365)
T d1zfja1          83 AEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEA--GADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIA-------  153 (365)
T ss_dssp             HHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHH--TCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEE-------
T ss_pred             HHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHc--CCCEEEEECCcccccchhHHHHHHHhhCCCcceee-------
Confidence            888754322  2234566788888889999999999  88999999999999999999999998888765555       


Q ss_pred             HHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccce
Q psy3862         173 MVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  252 (671)
Q Consensus       173 ~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~  252 (671)
                                                                    |||+|++++++|+++|||+|||||||||+||||.
T Consensus       154 ----------------------------------------------GNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~  187 (365)
T d1zfja1         154 ----------------------------------------------GNIATAEGARALYDAGVDVVKVGIGPGSICTTRV  187 (365)
T ss_dssp             ----------------------------------------------EEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHH
T ss_pred             ----------------------------------------------cccccHHHHHHHHhcCCceEEeeecccccccCcc
Confidence                                                          4555555555666666666699999999999999


Q ss_pred             ecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeC
Q psy3862         253 KTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQG  332 (671)
Q Consensus       253 V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~  332 (671)
                      ++|+|+||+|||+||++++++++                                                         
T Consensus       188 ~tGvGvPq~sai~~~~~~~~~~~---------------------------------------------------------  210 (365)
T d1zfja1         188 VAGVGVPQVTAIYDAAAVAREYG---------------------------------------------------------  210 (365)
T ss_dssp             HTCCCCCHHHHHHHHHHHHHHTT---------------------------------------------------------
T ss_pred             eeeeeccchhHHHHHHHHHHhCC---------------------------------------------------------
Confidence            99999999999999999998754                                                         


Q ss_pred             cceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccc
Q psy3862         333 VPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMF  412 (671)
Q Consensus       333 iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a  412 (671)
                      +||||                                                                           
T Consensus       211 ~~iIA---------------------------------------------------------------------------  215 (365)
T d1zfja1         211 KTIIA---------------------------------------------------------------------------  215 (365)
T ss_dssp             CEEEE---------------------------------------------------------------------------
T ss_pred             ceEEe---------------------------------------------------------------------------
Confidence            56666                                                                           


Q ss_pred             ccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEe
Q psy3862         413 AGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLF  492 (671)
Q Consensus       413 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g  492 (671)
                                                      +||+..+++++|+|.+|||+||+|.+++|+.++|++++..+|.++|.+
T Consensus       216 --------------------------------DGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~  263 (365)
T d1zfja1         216 --------------------------------DGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTY  263 (365)
T ss_dssp             --------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEE
T ss_pred             --------------------------------cCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeec
Confidence                                            899999999999999999999999999999999999999999999999


Q ss_pred             eCcccHHHHHhhcccc--------ccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEecc
Q psy3862         493 YGMSSTTAMDKHAGGV--------AEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTA  564 (671)
Q Consensus       493 ~G~~q~tAi~~~a~~~--------~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~  564 (671)
                      +||++..|+.+-...+        .+++.++|..+.++|.|++.+.+..++|++++++.++|+..++|++.+++|++++.
T Consensus       264 ~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~~~fv~vt~  343 (365)
T d1zfja1         264 RGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENAQFVEMSG  343 (365)
T ss_dssp             ECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHCCEEECCH
T ss_pred             CCcccHhhhhcccccccccccccccccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhCCEEEEECc
Confidence            9999999985432211        23345789999999999999999999999999999999999999999999998876


Q ss_pred             c
Q psy3862         565 Q  565 (671)
Q Consensus       565 ~  565 (671)
                      +
T Consensus       344 ~  344 (365)
T d1zfja1         344 A  344 (365)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=100.00  E-value=1.4e-57  Score=488.76  Aligned_cols=340  Identities=27%  Similarity=0.400  Sum_probs=286.0

Q ss_pred             ccccccCCCCCceEEecCCcCCCC-CCcceeeeeeec---ccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeec
Q psy3862          12 KIINDIKLDFKDVMLRPKRSTLKS-RSEVDITRTFTF---RNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHK   87 (671)
Q Consensus        12 ~~~~~~~l~fdDv~lvP~~~~~~~-~~~Vdlst~lt~---r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~   87 (671)
                      +++.+..||||||+|+|++++..+ |++|||+++|++   ..+.+++|++||++||||+|++.+||++|++.||+|+||+
T Consensus         2 ~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~GglgvihR   81 (362)
T d1pvna1           2 KYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFG   81 (362)
T ss_dssp             EECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECC
T ss_pred             ccccCCCCCccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEEee
Confidence            456778999999999999999876 899999999872   2234788999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhC-CCceEEEE
Q psy3862          88 YYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMY-PKHVIIAG  166 (671)
Q Consensus        88 n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~-P~~~li~g  166 (671)
                      ++++|+|.+++.+.......+. ..+...++.+++..++++  +.+++++|.+|||+..+.+.++.+++.+ |...+   
T Consensus        82 ~~~ie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~a--g~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~I---  155 (362)
T d1pvna1          82 SQSIESQAAMVHAVKNFRYLVG-AGINTRDFRERVPALVEA--GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKV---  155 (362)
T ss_dssp             SSCHHHHHHHHHHHHTCCCCCE-EEECSSSHHHHHHHHHHH--TCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCE---
T ss_pred             cCCHHHHHHHhhhhhhcccccc-cccchhhhHHHHHHHhhc--CceEEeechhccchhHHHHHHHHHHHhhccceee---
Confidence            9999999888754322111111 122334456788889998  7899999999999999999999987655 32223   


Q ss_pred             EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                                                                        +||||+|++++++|+++|||+|||||||||
T Consensus       156 --------------------------------------------------iAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs  185 (362)
T d1pvna1         156 --------------------------------------------------GAGNIVDGEGFRYLADAGADFIKIGIGGGS  185 (362)
T ss_dssp             --------------------------------------------------EEEEECSHHHHHHHHHHTCSEEEECSSCST
T ss_pred             --------------------------------------------------ecccccCHHHHHHHHHhCCcEEEecccccc
Confidence                                                              356666666666777777777799999999


Q ss_pred             ccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccC
Q psy3862         247 VCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNS  326 (671)
Q Consensus       247 ~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s  326 (671)
                      +||||+++|+|+||+|||+||+++++++.                                                   
T Consensus       186 ~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~---------------------------------------------------  214 (362)
T d1pvna1         186 ICITREQKGIGRGQATAVIDVVAERNKYF---------------------------------------------------  214 (362)
T ss_dssp             TBCHHHHTCBCCCHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred             cccchhhhccCCchHHHHHHHHHHHHHhh---------------------------------------------------
Confidence            99999999999999999999999998641                                                   


Q ss_pred             CceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEE
Q psy3862         327 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFV  406 (671)
Q Consensus       327 ~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i  406 (671)
                      .....++||||                                                                     
T Consensus       215 ~~~~~~v~iia---------------------------------------------------------------------  225 (362)
T d1pvna1         215 EETGIYIPVCS---------------------------------------------------------------------  225 (362)
T ss_dssp             HHHSEECCEEE---------------------------------------------------------------------
T ss_pred             hhcccCCceee---------------------------------------------------------------------
Confidence            01235789999                                                                     


Q ss_pred             EEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCC
Q psy3862         407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDG  486 (671)
Q Consensus       407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g  486 (671)
                                                            +||+..+++++|+|.+|||+||+|.+++|+.++|++++..+|
T Consensus       226 --------------------------------------DGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g  267 (362)
T d1pvna1         226 --------------------------------------DGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTING  267 (362)
T ss_dssp             --------------------------------------ESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETT
T ss_pred             --------------------------------------ccccCcccceeEEEEEeccceeehhhhhcccccCCcceeecc
Confidence                                                  899999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCcccHHHHHhh---ccccccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEec
Q psy3862         487 KKVKLFYGMSSTTAMDKH---AGGVAEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT  563 (671)
Q Consensus       487 ~~~k~g~G~~q~tAi~~~---a~~~~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~  563 (671)
                      +++|.+|||+|..|+.+-   .+...+|..++|....|+|+|++.+.+..++|+++++++++|+..++|++.+++|+.++
T Consensus       268 ~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~~f~~~t  347 (362)
T d1pvna1         268 SVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSKAKITLVS  347 (362)
T ss_dssp             EEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCEEEEBC
T ss_pred             ceeeeeeccccccccccccccccccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEEC
Confidence            999999999999887432   12344556788999999999999999999999999999999999999999999999876


Q ss_pred             cc
Q psy3862         564 AQ  565 (671)
Q Consensus       564 ~~  565 (671)
                      .+
T Consensus       348 ~~  349 (362)
T d1pvna1         348 SV  349 (362)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=9e-56  Score=475.15  Aligned_cols=322  Identities=34%  Similarity=0.558  Sum_probs=276.6

Q ss_pred             cCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHHH
Q psy3862          17 IKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKA   96 (671)
Q Consensus        17 ~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~~   96 (671)
                      .+|+||||+|+|+++++.|+ +|||+++|+    +++++++||++||||+|++.+||.+|++.||+|+||+|+++|+|.+
T Consensus        11 k~ltfdDVlLvP~~sti~sr-dVdls~~~~----~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~e~~~~   85 (368)
T d2cu0a1          11 KGYTFDDVLLIPQATEVEPK-DVDVSTRIT----PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVE   85 (368)
T ss_dssp             CCCCGGGEEECCCCCSSCST-TCBCCEEEE----TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHH
T ss_pred             hcCCcccEEEeCCCCcCchh-hceeeEEee----CCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEecccCCHHHHHH
Confidence            58999999999999999886 999999998    6789999999999999999999999999999999999999999988


Q ss_pred             hhhc------Cccc----ccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEE
Q psy3862          97 FAVQ------NPDV----IKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAG  166 (671)
Q Consensus        97 ~i~~------~p~~----~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g  166 (671)
                      ++.+      .+..    ...+.++.++++.+++|+.+++.+  +++++++|.+|||+...++.+|++++.+| ..+++|
T Consensus        86 ~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~a--Gvd~ivID~A~Gh~~~~i~~lK~ir~~~~-~~vIaG  162 (368)
T d2cu0a1          86 QVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKA--GVDVIVVDTAHAHNLKAIKSMKEMRQKVD-ADFIVG  162 (368)
T ss_dssp             HHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHT--TCSEEEEECSCCCCHHHHHHHHHHHHTCC-SEEEEE
T ss_pred             HHHhhhhhhhccccccccCccEEEEeccChHHHHHHHHHHHc--CCCEEEecCcccchhhhhhhhhhhhhhcc-cceeec
Confidence            8742      1211    123444556777888999999998  88999999999999999999999888776 345555


Q ss_pred             EeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCC
Q psy3862         167 NVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGS  246 (671)
Q Consensus       167 ~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~  246 (671)
                      |+.|.                                                     ++++++  +|||+|||||||||
T Consensus       163 NVaT~-----------------------------------------------------e~~~~l--~gaD~VkVGIG~Gs  187 (368)
T d2cu0a1         163 NIANP-----------------------------------------------------KAVDDL--TFADAVKVGIGPGS  187 (368)
T ss_dssp             EECCH-----------------------------------------------------HHHTTC--TTSSEEEECSSCST
T ss_pred             cccCH-----------------------------------------------------HHHHhh--hcCcceeecccCcc
Confidence            55554                                                     444333  46777799999999


Q ss_pred             ccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccC
Q psy3862         247 VCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNS  326 (671)
Q Consensus       247 ~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s  326 (671)
                      +||||.++|+|+||+|||+||++++++++                                                   
T Consensus       188 ~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~---------------------------------------------------  216 (368)
T d2cu0a1         188 ICTTRIVAGVGVPQITAVAMVADRAQEYG---------------------------------------------------  216 (368)
T ss_dssp             TBCHHHHTCCCCCHHHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred             cccchhhcccccchHHHHHHHHHHHhccC---------------------------------------------------
Confidence            99999999999999999999999998754                                                   


Q ss_pred             CceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEE
Q psy3862         327 GKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFV  406 (671)
Q Consensus       327 ~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i  406 (671)
                            +||||                                                                     
T Consensus       217 ------~~iiA---------------------------------------------------------------------  221 (368)
T d2cu0a1         217 ------LYVIA---------------------------------------------------------------------  221 (368)
T ss_dssp             ------CEEEE---------------------------------------------------------------------
T ss_pred             ------CeeEe---------------------------------------------------------------------
Confidence                  56666                                                                     


Q ss_pred             EEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCC
Q psy3862         407 MLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDG  486 (671)
Q Consensus       407 ~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g  486 (671)
                                                            +||+..+++++|+|.+|||+||+|.+.+|+.+++++++..+|
T Consensus       222 --------------------------------------DGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g  263 (368)
T d2cu0a1         222 --------------------------------------DGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIING  263 (368)
T ss_dssp             --------------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETT
T ss_pred             --------------------------------------cCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCC
Confidence                                                  899999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCcccHHHHHhhcccc--------ccccccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcce
Q psy3862         487 KKVKLFYGMSSTTAMDKHAGGV--------AEYRAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRAT  558 (671)
Q Consensus       487 ~~~k~g~G~~q~tAi~~~a~~~--------~~y~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~  558 (671)
                      .++|.++||++..|+.+....+        .++..++|..+.|+|.|++.+.+..++|+++++++++|+..++|++.+++
T Consensus       264 ~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~~~  343 (368)
T d2cu0a1         264 RKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGE  343 (368)
T ss_dssp             EEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCC
T ss_pred             eEcccccCcccccccccCCcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhhCCE
Confidence            9999999999999986432111        12224789999999999999999999999999999999999999999999


Q ss_pred             EEEeccc
Q psy3862         559 FIRCTAQ  565 (671)
Q Consensus       559 fv~~~~~  565 (671)
                      |+.++..
T Consensus       344 f~~vt~a  350 (368)
T d2cu0a1         344 FVIITHA  350 (368)
T ss_dssp             EEECCHH
T ss_pred             EEEECcc
Confidence            9987653

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.9e-55  Score=465.22  Aligned_cols=322  Identities=39%  Similarity=0.648  Sum_probs=272.5

Q ss_pred             ccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHHH
Q psy3862          16 DIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWK   95 (671)
Q Consensus        16 ~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq~   95 (671)
                      .++||||||+|+|+++++.|+ +||++|+||    +.+++++||+++||+++++.+||.+|+++||+|+||+++++|+|.
T Consensus         2 ~~~LtfdDVllvP~~s~~~sr-~vdl~t~lt----~~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~~e~~~   76 (330)
T d1vrda1           2 KEALTFDDVLLVPQYSEVLPK-DVKIDTRLT----RQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQA   76 (330)
T ss_dssp             CCCCCGGGEEECCCCCCCCGG-GSCCCEESS----SSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHH
T ss_pred             CCccccccEEEeCCCCCcccc-cceEEEEEe----cCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccchhhhH
Confidence            368999999999999999885 899999998    788999999999999999999999999999999999999999998


Q ss_pred             HhhhcCcccccceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHH
Q psy3862          96 AFAVQNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVE  175 (671)
Q Consensus        96 ~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~  175 (671)
                      +++.+.......+.+++|+++++.+++..++++  +++++++|.+|||+..+.+.++++|+.+|+..+++||+.|.+.++
T Consensus        77 ~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~a--gvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~  154 (330)
T d1vrda1          77 RQVSIVKKTRLLVGAAVGTSPETMERVEKLVKA--GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTE  154 (330)
T ss_dssp             HHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHT--TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHH
T ss_pred             HHHHHHhhhccEEEEEEecCHHHHHHHHHHHHC--CCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHH
Confidence            877544334445677788888889999999998  889999999999999999999999888887666666655555555


Q ss_pred             HHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcccCCCccccceecc
Q psy3862         176 ELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTG  255 (671)
Q Consensus       176 ~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~g  255 (671)
                      .|+++                                                     |||+|||||||||+||||.++|
T Consensus       155 ~l~~~-----------------------------------------------------GaD~v~VGig~Gs~ctt~~~~G  181 (330)
T d1vrda1         155 ALIKA-----------------------------------------------------GADAVKVGVGPGSICTTRVVAG  181 (330)
T ss_dssp             HHHHT-----------------------------------------------------TCSEEEECSSCSTTCHHHHHHC
T ss_pred             HHHHc-----------------------------------------------------CCCEEeeccccCccccccceec
Confidence            55555                                                     5555599999999999999999


Q ss_pred             cCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcce
Q psy3862         256 VGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPI  335 (671)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPi  335 (671)
                      +|+||+||+++|+++++++                                                         ++||
T Consensus       182 ~g~p~~sai~~~~~~~~~~---------------------------------------------------------~vpv  204 (330)
T d1vrda1         182 VGVPQLTAVMECSEVARKY---------------------------------------------------------DVPI  204 (330)
T ss_dssp             CCCCHHHHHHHHHHHHHTT---------------------------------------------------------TCCE
T ss_pred             cccccchhHHHHHHHHHhc---------------------------------------------------------CceE
Confidence            9999999999999999864                                                         4777


Q ss_pred             EecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEccccccc
Q psy3862         336 IAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGH  415 (671)
Q Consensus       336 Iaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh  415 (671)
                      ||                                                                              
T Consensus       205 IA------------------------------------------------------------------------------  206 (330)
T d1vrda1         205 IA------------------------------------------------------------------------------  206 (330)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            77                                                                              


Q ss_pred             cccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEEEeeCc
Q psy3862         416 DQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVKLFYGM  495 (671)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k~g~G~  495 (671)
                                                   +||+...++++|+|.+|||+||+|.++.|+.+|+++.+..+|+++|.++|+
T Consensus       207 -----------------------------dGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~  257 (330)
T d1vrda1         207 -----------------------------DGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGM  257 (330)
T ss_dssp             -----------------------------ESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCC
T ss_pred             -----------------------------cCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeecccc
Confidence                                         899999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhhccccccc-------cccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCCcceEEEec
Q psy3862         496 SSTTAMDKHAGGVAEY-------RAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCT  563 (671)
Q Consensus       496 ~q~tAi~~~a~~~~~y-------~~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~  563 (671)
                      ++..|+...  ...+|       ..++|....|+|.|++.+.+..++|+++++++++|+..++|++.++.||+++
T Consensus       258 ~s~~~~~~~--~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~~~fvrvt  330 (330)
T d1vrda1         258 GSLGAMRSG--SADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKAVFVKIT  330 (330)
T ss_dssp             C---------------------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHCCEEECC
T ss_pred             ccccccccC--chhhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcCCEEEEeC
Confidence            999877542  22223       2467888789999999999999999999999999999999999999998753

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=100.00  E-value=8.4e-55  Score=468.85  Aligned_cols=327  Identities=31%  Similarity=0.483  Sum_probs=277.8

Q ss_pred             cccCCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEEeecCCCHHHH
Q psy3862          15 NDIKLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEW   94 (671)
Q Consensus        15 ~~~~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgvIh~n~~~Eeq   94 (671)
                      ..++||||||+|+|+++++.|+ +|||+|+|+    +.+++++||+++||++|++.+||.+|+++||||+||+++++|+|
T Consensus        10 ~~~~LtfdDVllvP~~st~~sr-~V~l~t~lt----~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~~e~~   84 (378)
T d1jr1a1          10 CGDGLTYNDFLILPGYIDFTAD-QVDLTSALT----KKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQ   84 (378)
T ss_dssp             SCCCCCGGGEEECCCCCCSCGG-GCBCCEESS----SSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSCHHHH
T ss_pred             cCCCCCcccEEEeCCCCCCcHH-HceeeeEEE----CCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcCCCCHHHH
Confidence            4579999999999999999875 999999998    78899999999999999999999999999999999999999999


Q ss_pred             HHhhhc------Cccc----cc--ceEEecCCChhhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCce
Q psy3862          95 KAFAVQ------NPDV----IK--HVAVSSGISAKDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHV  162 (671)
Q Consensus        95 ~~~i~~------~p~~----~~--~~~v~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~  162 (671)
                      .+++++      .|..    ..  .+..++|...++.+++..+.++  +++++++|.+|+++....+.++++++.+|...
T Consensus        85 ~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~a--gv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~  162 (378)
T d1jr1a1          85 ANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALA--GVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQ  162 (378)
T ss_dssp             HHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHH--TCCEEEECCSSCCSHHHHHHHHHHHHHSTTCE
T ss_pred             HHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHhh--ccceEeeeccCccchhhHHHHHHHHHHCCCCc
Confidence            888752      1211    11  2345677777778888888888  78999999999999999999999988887655


Q ss_pred             EEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         163 IIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       163 li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      +++                                                     |||+|++++++|+++|||+|||||
T Consensus       163 iIa-----------------------------------------------------GnVaT~e~a~~L~~aGAD~VkVGi  189 (378)
T d1jr1a1         163 VIG-----------------------------------------------------GNVVTAAQAKNLIDAGVDALRVGM  189 (378)
T ss_dssp             EEE-----------------------------------------------------EEECSHHHHHHHHHHTCSEEEECS
T ss_pred             eee-----------------------------------------------------cccccHHHHHHHHHhCCCEEeecc
Confidence            444                                                     555555556666666666669999


Q ss_pred             cCCCccccceecccCcchhhhHHHHHHHhhhcCCcchhhhhhccceeeccccCCCceeeeecCCCccCCCCcccceeeee
Q psy3862         243 GPGSVCTTRLKTGVGYPQFSAVLECADAAHGLGGHIISFLTAMAQKIINDIKLDFKDVMLRPKRSTLKSRSEVDITRTFT  322 (671)
Q Consensus       243 ~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~fdDVll~P~rst~~sr~eVdl~~~l~  322 (671)
                      ||||+||||.++|+|+||+||+++|+++++++                                                
T Consensus       190 G~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~------------------------------------------------  221 (378)
T d1jr1a1         190 GCGSICITQEVLACGRPQATAVYKVSEYARRF------------------------------------------------  221 (378)
T ss_dssp             SCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGG------------------------------------------------
T ss_pred             ccccccccccccccCcccchhhhHHHHhhccc------------------------------------------------
Confidence            99999999999999999999999999999864                                                


Q ss_pred             eccCCceeeCcceEecCCCCCCCHHHHHHHHHcCCeEEEccCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcC
Q psy3862         323 FRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAG  402 (671)
Q Consensus       323 ~~~s~~~~~~iPiIaa~MDtV~~~~mA~~la~~Gglgvihr~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG  402 (671)
                               ++||||                                                                 
T Consensus       222 ---------~vpIIA-----------------------------------------------------------------  227 (378)
T d1jr1a1         222 ---------GVPVIA-----------------------------------------------------------------  227 (378)
T ss_dssp             ---------TCCEEE-----------------------------------------------------------------
T ss_pred             ---------CCceec-----------------------------------------------------------------
Confidence                     467776                                                                 


Q ss_pred             CcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         403 ADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       403 ~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                                                                +||+..+++++|+|.+|||+||+|.+++|+.+||++++
T Consensus       228 ------------------------------------------DGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~  265 (378)
T d1jr1a1         228 ------------------------------------------DGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYF  265 (378)
T ss_dssp             ------------------------------------------ESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCE
T ss_pred             ------------------------------------------ccccccCCceeeEEEeecceeeecceeeeeecccCccc
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             EeCCeEEEEeeCcccHHHHHhhcccccccc-------ccCCceEeeecCCCHHHHHHHHHhhHhHhccccCcccccccCC
Q psy3862         483 EKDGKKVKLFYGMSSTTAMDKHAGGVAEYR-------AAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPR  555 (671)
Q Consensus       483 ~~~g~~~k~g~G~~q~tAi~~~a~~~~~y~-------~~~G~~v~i~~~Gdi~kAiavMlG~~~ag~~e~~g~~i~e~~~  555 (671)
                      ..+|+++|.++||++..|+.+..+...+|+       .++|..+.++|.|++.+.+..++|+++++++++|+..++|++.
T Consensus       266 ~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~  345 (378)
T d1jr1a1         266 FSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRA  345 (378)
T ss_dssp             ESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred             eecCceeeeccccchhhhhhcccchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHh
Confidence            999999999999999999877655555553       4688888899999999999999999999999999999999974


Q ss_pred             -----cceEEEeccc
Q psy3862         556 -----RATFIRCTAQ  565 (671)
Q Consensus       556 -----~a~fv~~~~~  565 (671)
                           +++|+.++.+
T Consensus       346 ~~~~~~~~f~~~t~~  360 (378)
T d1jr1a1         346 MMYSGELKFEKRTSS  360 (378)
T ss_dssp             HHHHSCSCEEECCHH
T ss_pred             hhccCCceEEEEChh
Confidence                 7889987664

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=1.7e-18  Score=180.99  Aligned_cols=166  Identities=16%  Similarity=0.179  Sum_probs=98.6

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-------cHHHHHHHHHcCCeEEeecC--
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-------TFEMAKHLAKHGLFTTIHKY--   88 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-------~~~lA~Ala~~gglgvIh~n--   88 (671)
                      ..+|||+.|+|+.++..+.++|||+|+|.     +.++++||++|+|++.+       +..+|.+.++.|....+..+  
T Consensus         2 ~tgfddi~lvP~~l~~~d~~~vdlst~i~-----G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~   76 (329)
T d1p0ka_           2 ETGLDDITFVHVSLPDLALEQVDISTKIG-----ELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMS   76 (329)
T ss_dssp             CCSGGGEEECCCSCCCCCGGGCBCCEEET-----TEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTT
T ss_pred             CCCcceEEEECCCCCCCChhhCCCCEEEC-----CEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccc
Confidence            36799999999999877889999999995     78999999999998653       23578877777755444432  


Q ss_pred             CCHHHHHH--h--hh-cCcccccceEEecCCChhhHHHHHHHHHhCCCceEE--EeeccCCC--------ChHHHHHHHH
Q psy3862          89 YTLEEWKA--F--AV-QNPDVIKHVAVSSGISAKDLAGLKEILAALPEIEYI--CLDVANGY--------TQTFVDFVRR  153 (671)
Q Consensus        89 ~~~Eeq~~--~--i~-~~p~~~~~~~v~~G~~~~d~~rl~~l~~a~~~~d~I--vld~a~G~--------~~~~~~~ik~  153 (671)
                      .+.|+...  +  .+ ..|...........   ...+.....++.. +.+++  .++..+..        ...+.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~  152 (329)
T d1p0ka_          77 ALKDPSERLSYEIVRKENPNGLIFANLGSE---ATAAQAKEAVEMI-GANALQIHLNVIQEIVMPEGDRSFSGALKRIEQ  152 (329)
T ss_dssp             TTTCHHHHHHHHHHHHHCSSSCEEEEEETT---CCHHHHHHHHHHT-TCSEEEEEECTTTTC--------CTTHHHHHHH
T ss_pred             cchhHHHHhhhhhHhhhCCcceEEEeeccc---hhHHHHHHHHHHc-CCCEEEecccccchhhhccccccccchHHHHHH
Confidence            33333211  1  11 22221111111111   1233333333321 34444  44433321        3456677777


Q ss_pred             HHHhC--CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCC
Q psy3862         154 IREMY--PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG  192 (671)
Q Consensus       154 lr~~~--P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G  192 (671)
                      +++..  |...+.++++.+.+.++.++++|||+|++++.+|
T Consensus       153 i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG  193 (329)
T d1p0ka_         153 ICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGG  193 (329)
T ss_dssp             HHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---
T ss_pred             HHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCC
Confidence            77654  4334446677788888888888888888776554

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=8.9e-18  Score=173.04  Aligned_cols=206  Identities=18%  Similarity=0.176  Sum_probs=116.1

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcccc------HHHHHHHHHcCCeEEeecCC-C
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHGLFTTIHKYY-T   90 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~------~~lA~Ala~~gglgvIh~n~-~   90 (671)
                      ...||++.|.|+.++..+.++|||+|+|.     +.+++.||+.+||++.+.      ..+|.+.++.|..-.++.+. .
T Consensus         3 ~~~f~~~~~~p~~L~~~d~~~vDlst~~~-----G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~   77 (310)
T d1vcfa1           3 TTGLEGFRLRYQALAGLALSEVDLTTPFL-----GKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL   77 (310)
T ss_dssp             CCSGGGEEECCCTTCCCCGGGCCCCEEET-----TEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH
T ss_pred             cccccceEEEcccCCCCCcccCcCCeEEC-----CEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhc
Confidence            46799999999999876789999999994     889999999999987642      35677655555443344331 1


Q ss_pred             HHH---HHHh-hh-cCcccccceEEecC----CChhhHHHHHHHHHhCCCceEEEeeccC-------CCChHHHHHHHHH
Q psy3862          91 LEE---WKAF-AV-QNPDVIKHVAVSSG----ISAKDLAGLKEILAALPEIEYICLDVAN-------GYTQTFVDFVRRI  154 (671)
Q Consensus        91 ~Ee---q~~~-i~-~~p~~~~~~~v~~G----~~~~d~~rl~~l~~a~~~~d~Ivld~a~-------G~~~~~~~~ik~l  154 (671)
                      .++   ...+ ++ ..|+....+.+...    .+.+...+..+..+.  ......++..+       .....+.+..+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (310)
T d1vcfa1          78 LERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEA--DALAFHVNPLQEAVQRGDTDFRGLVERLAEL  155 (310)
T ss_dssp             HHCTTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTC--SEEEEECCHHHHHHTTSCCCCTTHHHHHHHH
T ss_pred             chhhhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCC--CeeccccccchhhhcccccccccHHHHHHHH
Confidence            111   0111 11 12322111122111    122222333333332  22223332211       1123445544443


Q ss_pred             HH-hCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccccCCccccccHHHHHHHHHc
Q psy3862         155 RE-MYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILS  233 (671)
Q Consensus       155 r~-~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~a  233 (671)
                      .+ ..|...+.+++..+.+.++.+.++|||+|++.+-+|..                                       
T Consensus       156 ~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~---------------------------------------  196 (310)
T d1vcfa1         156 LPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTS---------------------------------------  196 (310)
T ss_dssp             CSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCC---------------------------------------
T ss_pred             hhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccc---------------------------------------
Confidence            22 24655555667778999999999999999987655421                                       


Q ss_pred             CCCEEEEcccCCCccccceecccCcchhhhHHHHHHHh
Q psy3862         234 GADVIKVGIGPGSVCTTRLKTGVGYPQFSAVLECADAA  271 (671)
Q Consensus       234 GAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~~~~~~~  271 (671)
                       +|.+..+.++|+.|+++ ..++|.|++.++.+|.+++
T Consensus       197 -~~~~~~~~~~~~~~~~~-~~~~g~~~~~al~~~~~~~  232 (310)
T d1vcfa1         197 -WARVEEWVRFGEVRHPE-LCEIGIPTARAILEVREVL  232 (310)
T ss_dssp             -HHHHHHTC--------C-CTTCSCBHHHHHHHHHHHC
T ss_pred             -hhhcccccccCchhhhh-hhhcchHHHHHHHHHHhhc
Confidence             12235667888999887 6999999999999998765

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=6.5e-14  Score=145.75  Aligned_cols=278  Identities=17%  Similarity=0.162  Sum_probs=161.1

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCC-------CHHHHHHHHHcCCeEEEcc--C
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-------TFEMAKHLAKHGLFTTIHK--Y  364 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~-------~~~mA~~la~~Gglgvihr--~  364 (671)
                      .+.||||+|+|......++++|||+++|.     .+.++.||+.|||+...       +..+|++.++.|....+..  .
T Consensus         2 ~tgfddi~lvP~~l~~~d~~~vdlst~i~-----G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~   76 (329)
T d1p0ka_           2 ETGLDDITFVHVSLPDLALEQVDISTKIG-----ELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMS   76 (329)
T ss_dssp             CCSGGGEEECCCSCCCCCGGGCBCCEEET-----TEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTT
T ss_pred             CCCcceEEEECCCCCCCChhhCCCCEEEC-----CEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccc
Confidence            46799999999985555679999999995     57899999999998654       3467888888998777763  3


Q ss_pred             CCHHHHHHH----Hh-cCcccccceeeecccChhhHHHH-HHcCCcEEEEcccccccccccccccccccccccccccccc
Q psy3862         365 YTLEEWKAF----AV-QNPDVIKHVADGGCTSPGDVAKA-MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNS  438 (671)
Q Consensus       365 ~~~e~~~~~----v~-~~~~~~~~v~~~~~~~~~~~~~l-~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~  438 (671)
                      .+.|+..+.    .+ +.+..............++..+. -++|.|.++++ ..+.|......-..........+.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~  155 (329)
T d1p0ka_          77 ALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIH-LNVIQEIVMPEGDRSFSGALKRIEQICS  155 (329)
T ss_dssp             TTTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEE-ECTTTTC--------CTTHHHHHHHHHH
T ss_pred             cchhHHHHhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEec-ccccchhhhccccccccchHHHHHHHHH
Confidence            333333222    11 12222111111111222444444 45799999998 5544321111111111111223445555


Q ss_pred             ccCc-eee--ccccCchhHHH-HHHcCCcEEEECccccCC---ccCCCcEEEeCCeEEEEeeCcccHHHHHhhccccccc
Q psy3862         439 YLGG-VVD--GGCTSPGDVAK-AMGAGADFVMLGGMFAGH---DQSGGELIEKDGKKVKLFYGMSSTTAMDKHAGGVAEY  511 (671)
Q Consensus       439 ~~~~-~i~--gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~---s~ctt~~v~~~g~~~k~g~G~~q~tAi~~~a~~~~~y  511 (671)
                      .++. ++.  .||+.+.+.++ +.++|||+|.|+. ..|.   ++|+++...  +...-...|.+++.++.+....+.+.
T Consensus       156 ~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~-~gG~~~~~~~~~~~~~--~~g~~~~~~~~~~~~l~~~~~~~~~v  232 (329)
T d1p0ka_         156 RVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGG-YGGTNFSKIENLRRQR--QISFFNSWGISTAASLAEIRSEFPAS  232 (329)
T ss_dssp             HCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC----------------C--CGGGGTTCSCCHHHHHHHHHHHCTTS
T ss_pred             HcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcC-CCCCCccccchhhccc--CccchhHhHHHHHHHHHHHHhhcCCc
Confidence            5544 322  45667777766 6799999999986 3332   455554321  11111234455566555443333221


Q ss_pred             -cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEecccccccccchhhhcccccccce
Q psy3862         512 -RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVNDTVQDILGGLRSACT  585 (671)
Q Consensus       512 -~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~~~~~~~~~~~~G~~~~k~  585 (671)
                       ...+|+   |++++||+|||+     ||+|+++--.-                                ..+|      
T Consensus       233 ~viadGG---Ir~g~Dv~KAlalGAdaV~iGr~~l~al--------------------------------~~~G------  271 (329)
T d1p0ka_         233 TMIASGG---LQDALDVAKAIALGASCTGMAGHFLKAL--------------------------------TDSG------  271 (329)
T ss_dssp             EEEEESS---CCSHHHHHHHHHTTCSEEEECHHHHHHH--------------------------------HHHH------
T ss_pred             eEEEcCC---cccHHHHHHHHHcCCCchhccHHHHHHh--------------------------------ccCC------
Confidence             134443   799999999999     77777653210                                0001      


Q ss_pred             eeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcccccccccccEEE
Q psy3862         586 YVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGASKLKELPRRATFI  659 (671)
Q Consensus       586 y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~~l~el~~~a~Fv  659 (671)
                                                 ++|          ++++|..|.+.||++|+++|+++++||++. .++
T Consensus       272 ---------------------------~~g----------v~~~l~~l~~el~~~m~~~G~~~i~el~~~-~lv  307 (329)
T d1p0ka_         272 ---------------------------EEG----------LLEEIQLILEELKLIMTVLGARTIADLQKA-PLV  307 (329)
T ss_dssp             ---------------------------HHH----------HHHHHHHHHHHHHHHHHHHTCCBHHHHTTC-CEE
T ss_pred             ---------------------------HHH----------HHHHHHHHHHHHHHHHHHhCCCCHHHhCcC-CEE
Confidence                                       112          778999999999999999999999999764 444

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=5.6e-09  Score=106.21  Aligned_cols=262  Identities=17%  Similarity=0.058  Sum_probs=153.3

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCCCCH------HHHHHHHHcCCeEEEccC---
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTF------EMAKHLAKHGLFTTIHKY---  364 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV~~~------~mA~~la~~Gglgvihr~---  364 (671)
                      .-.|+++.|+|+.-.-.+++||||+++|-     ..++..||+.|||+..+..      .+|++.++.|....+..+   
T Consensus         3 ~~~f~~~~~~p~~L~~~d~~~vDlst~~~-----G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~   77 (310)
T d1vcfa1           3 TTGLEGFRLRYQALAGLALSEVDLTTPFL-----GKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL   77 (310)
T ss_dssp             CCSGGGEEECCCTTCCCCGGGCCCCEEET-----TEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH
T ss_pred             cccccceEEEcccCCCCCcccCcCCeEEC-----CEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhc
Confidence            45799999999997755679999999996     5789999999999876543      467777788876666532   


Q ss_pred             ---CCHHHHHHHHhcCcccccceeeeccc----ChhhHHHHHH-cCCcEEEEccccc-------cc--cccccccccccc
Q psy3862         365 ---YTLEEWKAFAVQNPDVIKHVADGGCT----SPGDVAKAMG-AGADFVMLGGMFA-------GH--DQSGGELTNIEY  427 (671)
Q Consensus       365 ---~~~e~~~~~v~~~~~~~~~v~~~~~~----~~~~~~~l~~-aG~d~i~id~~a~-------gh--~~~~~~~~~~~~  427 (671)
                         ....+|.......++...........    +.+...+..+ .+++.+++. ...       ++  ..+..+....  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--  154 (310)
T d1vcfa1          78 LERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFH-VNPLQEAVQRGDTDFRGLVERLAE--  154 (310)
T ss_dssp             HHCTTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEE-CCHHHHHHTTSCCCCTTHHHHHHH--
T ss_pred             chhhhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccc-cccchhhhcccccccccHHHHHHH--
Confidence               22222222212223321111111111    1133344433 578888764 211       11  0111111110  


Q ss_pred             cccccccccccccCc--eeeccccCchhHHH-HHHcCCcEEEECccccCC-----------ccCCCcEEEeCCeEEEEee
Q psy3862         428 MFFPLVGDMNSYLGG--VVDGGCTSPGDVAK-AMGAGADFVMLGGMFAGH-----------DQSGGELIEKDGKKVKLFY  493 (671)
Q Consensus       428 ~~~~~~~~~~~~~~~--~i~gG~v~t~~~a~-~l~aGAd~V~vG~~g~G~-----------s~ctt~~v~~~g~~~k~g~  493 (671)
                              +.+.-..  +..-++..+.+.++ +.++|+|+|.|..-|...           +.|++.         ..++
T Consensus       155 --------~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~---------~~~~  217 (310)
T d1vcfa1         155 --------LLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPE---------LCEI  217 (310)
T ss_dssp             --------HCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------C---------CTTC
T ss_pred             --------HhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhh---------hhhc
Confidence                    0111111  11223446677766 569999999987422210           122222         1357


Q ss_pred             CcccHHHHHhhccccccc-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEeccccc
Q psy3862         494 GMSSTTAMDKHAGGVAEY-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCTAQLN  567 (671)
Q Consensus       494 G~~q~tAi~~~a~~~~~y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~~~~~  567 (671)
                      |.|++.++.++.....+. ...+|+   |++++||.|||+     ||+|+++-..-                        
T Consensus       218 g~~~~~al~~~~~~~~~i~Ii~dGG---Ir~g~Dv~KALalGAdaV~iGr~~l~~~------------------------  270 (310)
T d1vcfa1         218 GIPTARAILEVREVLPHLPLVASGG---VYTGTDGAKALALGADLLAVARPLLRPA------------------------  270 (310)
T ss_dssp             SCBHHHHHHHHHHHCSSSCEEEESS---CCSHHHHHHHHHHTCSEEEECGGGHHHH------------------------
T ss_pred             chHHHHHHHHHHhhcCCCeEEeCCC---CCchHHHHHHHHhCCCEeeEhHHHHHHh------------------------
Confidence            899999998765544332 123443   799999999999     55555442210                        


Q ss_pred             ccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccccCcc
Q psy3862         568 NVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTYVGAS  647 (671)
Q Consensus       568 ~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y~Ga~  647 (671)
                                                                   .+|.+      | |++++..|...|++.|.++|++
T Consensus       271 ---------------------------------------------~~G~~------g-v~~~l~~l~~El~~~m~~~G~~  298 (310)
T d1vcfa1         271 ---------------------------------------------LEGAE------R-VAAWIGDYLEELRTALFAIGAR  298 (310)
T ss_dssp             ---------------------------------------------TTCHH------H-HHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ---------------------------------------------ccCHH------H-HHHHHHHHHHHHHHHHHHhCCC
Confidence                                                         11211      1 6789999999999999999999


Q ss_pred             cccccccccEEE
Q psy3862         648 KLKELPRRATFI  659 (671)
Q Consensus       648 ~l~el~~~a~Fv  659 (671)
                      +|+||+.|.+||
T Consensus       299 ~i~el~g~~~~~  310 (310)
T d1vcfa1         299 NPKEARGRVERV  310 (310)
T ss_dssp             SGGGGTTCEEEC
T ss_pred             CHHHHhhhhhcC
Confidence            999999999985

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=8.7e-09  Score=107.77  Aligned_cols=255  Identities=20%  Similarity=0.193  Sum_probs=152.1

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCC------CCCCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMD------TVGTFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MD------tV~~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      -.||+|.|+|..  +...+++||+++|-     ..++..||+-|||.      .-.+-.+|++-.++|....+-  +..+
T Consensus        39 ~aFd~i~l~pr~--L~d~~~idlst~~l-----G~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~  111 (349)
T d1tb3a1          39 AAFKRIRLRPRY--LRDMSKVDTRTTIQ-----GQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYS  111 (349)
T ss_dssp             HHHHHCCBCCCC--SSCCSSCBCCEEET-----TEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSC
T ss_pred             HHHHhccEEccc--ccCCCCCCCceeEC-----CcCccceEEEcchhcccccccchhhHHHHhhhhcccceeeccccccc
Confidence            359999999976  33457999999984     57889999999998      455667899999999999998  5577


Q ss_pred             HHHHHHHHhcCcccccceeeecccCh-----hhHHHHHHcCCcEEEEc--cccccccc---------------ccccccc
Q psy3862         367 LEEWKAFAVQNPDVIKHVADGGCTSP-----GDVAKAMGAGADFVMLG--GMFAGHDQ---------------SGGELTN  424 (671)
Q Consensus       367 ~e~~~~~v~~~~~~~~~v~~~~~~~~-----~~~~~l~~aG~d~i~id--~~a~gh~~---------------~~~~~~~  424 (671)
                      .|+..+...+.+.    +..-....+     +-+++..++|...+++.  ....++-+               ..+..+.
T Consensus       112 ~e~v~~~~~~~~~----~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~  187 (349)
T d1tb3a1         112 LEDIVAAAPEGFR----WFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALK  187 (349)
T ss_dssp             HHHHHHHSTTCCE----EEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCC
T ss_pred             chhhhhhccCCCe----eeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhh
Confidence            8776554432211    111111111     22334456787766553  11111110               0000000


Q ss_pred             cc-------------ccccccccccccccCc-eeeccccCchhHHHHHHcCCcEEEECccccCCccCCCcEEEeCCeEEE
Q psy3862         425 IE-------------YMFFPLVGDMNSYLGG-VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELIEKDGKKVK  490 (671)
Q Consensus       425 ~~-------------~~~~~~~~~~~~~~~~-~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v~~~g~~~k  490 (671)
                      ..             ......+.++++.++- ++.-|+....+...+.++|+|++.|.. -.| ..+.+           
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a~~~G~d~i~vsn-hgg-r~~d~-----------  254 (349)
T d1tb3a1         188 EEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSN-HGG-RQLDE-----------  254 (349)
T ss_dssp             C-------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHHHHTTCSEEEECC-GGG-TSSCS-----------
T ss_pred             hccccccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHHHHhhccceeeec-ccc-ccccc-----------
Confidence            00             0011234455555543 666776555555558899999999996 333 33333           


Q ss_pred             EeeCcccHHHHHhhcccccc-c-cccCCceEeeecCCCHHHHHH-----HHHhhHhHhccccCcccccccCCcceEEEec
Q psy3862         491 LFYGMSSTTAMDKHAGGVAE-Y-RAAEGKTVQVPYRGDVNDTVQ-----DILGGLRSACTYVGASKLKELPRRATFIRCT  563 (671)
Q Consensus       491 ~g~G~~q~tAi~~~a~~~~~-y-~~~~G~~v~i~~~Gdi~kAia-----vMlG~~~ag~~e~~g~~i~e~~~~a~fv~~~  563 (671)
                         +.+.+.++-+....... . ...+|+   |++..||+||||     |++|+++--                      
T Consensus       255 ---~~~~~~~l~~i~~~~~~~~~iiadGG---IR~G~Dv~KALALGA~~V~igrp~L~----------------------  306 (349)
T d1tb3a1         255 ---VSASIDALREVVAAVKGKIEVYMDGG---VRTGTDVLKALALGARCIFLGRPILW----------------------  306 (349)
T ss_dssp             ---BCCHHHHHHHHHHHHTTSSEEEEESS---CCSHHHHHHHHHTTCSCEEESHHHHH----------------------
T ss_pred             ---cccchhhcceeeeccCCCeeEEeccC---cCcHHHHHHHHHcCCCEEEEChHHHH----------------------
Confidence               23344444333222211 0 134443   799999999999     444443311                      


Q ss_pred             ccccccccchhhhcccccccceeeccccccccccccccchhccccccccCCCceEecccccCHHHHHHHHHHHHhhhccc
Q psy3862         564 AQLNNVNDTVQDILGGLRSACTYVGASKLKELPRRATFIRCTAQLNNVAAEGKTVQVPYRGDVNDTVQDILGGLRSACTY  643 (671)
Q Consensus       564 ~~~~~~~~~~~~~~~G~~~~k~y~Gm~s~~a~~~~~~~~r~~~~~~~~~~eG~~~~v~~kG~v~~~l~~l~gGLrs~m~y  643 (671)
                                              +.                      +..|.      +| ++++|..+..-||+.|..
T Consensus       307 ------------------------~l----------------------a~~G~------~g-v~~~l~~l~~EL~~~M~l  333 (349)
T d1tb3a1         307 ------------------------GL----------------------ACKGE------DG-VKEVLDILTAELHRCMTL  333 (349)
T ss_dssp             ------------------------HH----------------------HHHHH------HH-HHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------HH----------------------HhccH------HH-HHHHHHHHHHHHHHHHHH
Confidence                                    10                      01111      12 788899999999999999


Q ss_pred             cCccccccccc
Q psy3862         644 VGASKLKELPR  654 (671)
Q Consensus       644 ~Ga~~l~el~~  654 (671)
                      +|+++++||++
T Consensus       334 ~G~~~i~eL~~  344 (349)
T d1tb3a1         334 SGCQSVAEISP  344 (349)
T ss_dssp             HTCSBGGGCCG
T ss_pred             hCCCCHHHcCH
Confidence            99999999976

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=7.9e-08  Score=100.33  Aligned_cols=216  Identities=19%  Similarity=0.109  Sum_probs=126.5

Q ss_pred             CCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc------cHHHHHHHHHcCCeEEeec--CCC
Q psy3862          19 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHK--YYT   90 (671)
Q Consensus        19 l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~--n~~   90 (671)
                      -.||++.|+|+.+..  .+++||+|+|     -+.+++.||+++||++.+      +..+|.+..+.|....+..  ..+
T Consensus        39 ~aFd~i~l~pr~L~d--~~~idlst~~-----lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~  111 (349)
T d1tb3a1          39 AAFKRIRLRPRYLRD--MSKVDTRTTI-----QGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYS  111 (349)
T ss_dssp             HHHHHCCBCCCCSSC--CSSCBCCEEE-----TTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSC
T ss_pred             HHHHhccEEcccccC--CCCCCCceeE-----CCcCccceEEEcchhcccccccchhhHHHHhhhhcccceeeccccccc
Confidence            469999999999864  4799999999     489999999999999854      3568887777765555553  355


Q ss_pred             HHHHHHhhhcCcccccceEEecCCChhhH-HHHHHHHHhCCCceEEEeecc---------------------------CC
Q psy3862          91 LEEWKAFAVQNPDVIKHVAVSSGISAKDL-AGLKEILAALPEIEYICLDVA---------------------------NG  142 (671)
Q Consensus        91 ~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~-~rl~~l~~a~~~~d~Ivld~a---------------------------~G  142 (671)
                      .|+..+.   .|+...-+.+......... ..+.....+.-..-.+.+|..                           ..
T Consensus       112 ~e~v~~~---~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~  188 (349)
T d1tb3a1         112 LEDIVAA---APEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKE  188 (349)
T ss_dssp             HHHHHHH---STTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC
T ss_pred             chhhhhh---ccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhh
Confidence            5553222   2221111111111110001 111112222111111111110                           00


Q ss_pred             C------Ch------HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhh
Q psy3862         143 Y------TQ------TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQ  210 (671)
Q Consensus       143 ~------~~------~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~  210 (671)
                      .      +.      -..+.++++++..+ ..++.-.+.+.+.+..+.++|+|.+.+...+|..+....    +++..++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~d~~~----~~~~~l~  263 (349)
T d1tb3a1         189 EKPTQSVPVSFPKASFCWNDLSLLQSITR-LPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVS----ASIDALR  263 (349)
T ss_dssp             -------------CCCCHHHHHHHHTTCC-SCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSBC----CHHHHHH
T ss_pred             ccccccccccccCCCCCHHHHHHHHHhcC-CCcccchhhhhHHHHHHHHhhccceeeeccccccccccc----cchhhcc
Confidence            0      00      01144566655432 345666778899999999999999999876664321110    1222222


Q ss_pred             hcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHH
Q psy3862         211 FYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVL  265 (671)
Q Consensus       211 ~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~  265 (671)
                      .+.     .+|  +-|||=++--+.-+|++|||+|                |+|+|-+.++.
T Consensus       264 ~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V----------------~igrp~L~~la  309 (349)
T d1tb3a1         264 EVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCI----------------FLGRPILWGLA  309 (349)
T ss_dssp             HHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCE----------------EESHHHHHHHH
T ss_pred             eeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEE----------------EEChHHHHHHH
Confidence            221     244  7999999999999999999998                45688876643

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.61  E-value=1.1e-06  Score=91.10  Aligned_cols=206  Identities=15%  Similarity=0.166  Sum_probs=115.6

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcccc------HHHHHHHHHcCCeEEee--cCC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVGT------FEMAKHLAKHGLFTTIH--KYY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~------~~lA~Ala~~gglgvIh--~n~   89 (671)
                      ...||+|.|+|+.+.  ..++|||+|+|     -+.+++.||++++|++.+.      ..+|.+.++.+--..+.  ..+
T Consensus        38 ~~aFd~i~l~pr~L~--d~~~idlst~~-----lGk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~  110 (353)
T d1p4ca_          38 RDVFQQWRFKPKRLV--DVSRRSLQAEV-----LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNM  110 (353)
T ss_dssp             HHGGGGEEECCCCSC--CCSSCBCCEEE-----TTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSS
T ss_pred             HHHHHhCcEEccccc--CCCCCCCceEE-----CCcCccCceeeccccccccccchhhHHHHHHHHHhhccccccccccc
Confidence            457999999999993  46899999999     5889999999999998642      46777655554332233  346


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhhHHHHHHHHH-hCCCceEEEeecc----------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGLKEILA-ALPEIEYICLDVA----------------------------  140 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl~~l~~-a~~~~d~Ivld~a----------------------------  140 (671)
                      +.++..+.... +   ..+..... .....+.+.+..+ .....-.+.+|..                            
T Consensus       111 ~~~e~~~~~~~-~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~  185 (353)
T d1p4ca_         111 SIEDLARQCDG-D---LWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGID  185 (353)
T ss_dssp             CHHHHHHHCCS-C---EEEEECCS-SHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCC
T ss_pred             cchhHHHhcCC-c---eeeeeccc-cHHHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhc
Confidence            66664433210 0   00000000 0000011111100 0000000111110                            


Q ss_pred             ----C-CC-------------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc
Q psy3862         141 ----N-GY-------------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK  202 (671)
Q Consensus       141 ----~-G~-------------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~  202 (671)
                          . ..             +.-..+.++.+++.. ...+++..+.+.+.++.+.+.|+|.+.+...+|....+    .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~~~~----~  260 (353)
T d1p4ca_         186 LGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLW-PHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDC----A  260 (353)
T ss_dssp             CSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHC-CSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTT----C
T ss_pred             cccccccccchhHHHHHhccCCCCCHHHHHHHHhcc-ccchhhhcchhhhhHHHHHhcCCchhhhcccccccccc----c
Confidence                0 00             001223455555443 24567777889999999999999999886654432100    0


Q ss_pred             CCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEE
Q psy3862         203 TSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKV  240 (671)
Q Consensus       203 ~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkV  240 (671)
                      .+...+++.+.   ..|  +-|||=++--+.-+|++|||.|-+
T Consensus       261 ~~~~~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLGAd~vgi  303 (353)
T d1p4ca_         261 ISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLL  303 (353)
T ss_dssp             CCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEE
T ss_pred             ccchhcccchhcccccceeecCCcCchHHHHHHHHcCCCEEEE
Confidence            11222222221   234  799999999999999999999833

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.49  E-value=8.6e-08  Score=99.52  Aligned_cols=74  Identities=16%  Similarity=0.256  Sum_probs=56.5

Q ss_pred             cCCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCC------CCHHHHHHHHHcCCeEEEc--cCC
Q psy3862         294 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYY  365 (671)
Q Consensus       294 ~l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV------~~~~mA~~la~~Gglgvih--r~~  365 (671)
                      ...||||.|+|..=  ...++|||+++|=     ..++..||+-++|-..      .+..+|++-.++|.-..+=  .++
T Consensus        38 ~~aFd~i~l~pr~L--~d~~~idlst~~l-----Gk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~  110 (353)
T d1p4ca_          38 RDVFQQWRFKPKRL--VDVSRRSLQAEVL-----GKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNM  110 (353)
T ss_dssp             HHGGGGEEECCCCS--CCCSSCBCCEEET-----TEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSS
T ss_pred             HHHHHhCcEEcccc--cCCCCCCCceEEC-----CcCccCceeeccccccccccchhhHHHHHHHHHhhccccccccccc
Confidence            35799999999764  4458999999985     5788999999999744      4556777777777666554  677


Q ss_pred             CHHHHHHHH
Q psy3862         366 TLEEWKAFA  374 (671)
Q Consensus       366 ~~e~~~~~v  374 (671)
                      +.++..+..
T Consensus       111 ~~~e~~~~~  119 (353)
T d1p4ca_         111 SIEDLARQC  119 (353)
T ss_dssp             CHHHHHHHC
T ss_pred             cchhHHHhc
Confidence            888876654

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.42  E-value=4.5e-06  Score=86.72  Aligned_cols=216  Identities=17%  Similarity=0.149  Sum_probs=120.0

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCcc------ccHHHHHHHHHcCCeEEeec--CC
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIHK--YY   89 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~v------t~~~lA~Ala~~gglgvIh~--n~   89 (671)
                      ...||++.|+|+.++.  .+++||+|+|     -+.+++.||++++|++.      .+..+|.+..+.|-.-.+..  ..
T Consensus        39 ~~~Fd~i~l~pr~L~d--~~~iDlst~~-----lG~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~  111 (359)
T d1goxa_          39 RNAFSRILFRPRILID--VTNIDMTTTI-----LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATS  111 (359)
T ss_dssp             HHGGGGEEECCCCSCC--CSCCBCCEEE-----TTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSS
T ss_pred             HHHHHhcceecccccC--CCCCCCceeE-----CCcccCCceeeccccccccCCCchHHHhhhhHHhhCCcccccccccc
Confidence            3579999999999964  5799999999     48899999999999975      23567887666663333443  36


Q ss_pred             CHHHHHHhhhcCcccccceEEecCCChhh-HHHHHHHHHhCCCceEEEeeccC---------------------------
Q psy3862          90 TLEEWKAFAVQNPDVIKHVAVSSGISAKD-LAGLKEILAALPEIEYICLDVAN---------------------------  141 (671)
Q Consensus        90 ~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d-~~rl~~l~~a~~~~d~Ivld~a~---------------------------  141 (671)
                      +.|+..+.. ..|..   +....--.... ...+.....+......+.+|...                           
T Consensus       112 s~~~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (359)
T d1goxa_         112 SVEEVASTG-PGIRF---FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGID  187 (359)
T ss_dssp             CHHHHHTTC-CCCEE---EEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSC
T ss_pred             cchhhHHhc-CCCcc---cccccchhHHHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhc
Confidence            666643221 01100   00000000000 01111111111111111111000                           


Q ss_pred             -CC-----ChH-------------HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEeccc
Q psy3862         142 -GY-----TQT-------------FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNK  202 (671)
Q Consensus       142 -G~-----~~~-------------~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~  202 (671)
                       +.     ...             ..+.++++++..+ ..++.-.+.+.+++..+.+.|+|.+.+.--+|...    -.-
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~~kg~~~~~da~~a~~~g~~~~~vsnhggr~l----d~~  262 (359)
T d1goxa_         188 LGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITS-LPILVKGVITAEDARLAVQHGAAGIIVSNHGARQL----DYV  262 (359)
T ss_dssp             CC---------HHHHHHHTBCTTCCHHHHHHHHHHCC-SCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTSS----TTC
T ss_pred             cccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcc-cceeeecccchHHHHHHHHccccceeccccccccc----ccc
Confidence             00     000             0122444444332 23445456788999999999999998765444210    000


Q ss_pred             CCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHH
Q psy3862         203 TSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVL  265 (671)
Q Consensus       203 ~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~  265 (671)
                      .+++..++.+.     .+|  +-|||=++--+.-+|++|||.|                |+|+|.+.+..
T Consensus       263 ~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~v----------------gigrp~L~~la  316 (359)
T d1goxa_         263 PATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGV----------------FIGRPVVFSLA  316 (359)
T ss_dssp             CCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEE----------------EECHHHHHHHH
T ss_pred             cchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEE----------------EEcHHHHHHHH
Confidence            01222222221     234  7999999999999999999988                67799886643

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.4e-05  Score=84.69  Aligned_cols=219  Identities=16%  Similarity=0.119  Sum_probs=117.9

Q ss_pred             CCCCCceEEecCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-------cHHHHHHHHHc-CCeEE-ee--
Q psy3862          18 KLDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-------TFEMAKHLAKH-GLFTT-IH--   86 (671)
Q Consensus        18 ~l~fdDv~lvP~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-------~~~lA~Ala~~-gglgv-Ih--   86 (671)
                      -..||++.|+|+.+..  .++|||+|+|     -+.++++||++++|++..       +.++|.+.+.. .++++ +-  
T Consensus        61 ~~aFd~i~l~Pr~L~d--vs~iDlst~~-----lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~  133 (414)
T d1kbia1          61 HNAYHRIFFKPKILVD--VRKVDISTDM-----LGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTL  133 (414)
T ss_dssp             HHGGGGCEECCCCSCC--CSSCBCCEEE-----TTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTT
T ss_pred             HHHHHhceeeccccCC--CcCCCCceeE-----CCccCCCCEEEChhhhhcccCcchhHHHHHhhHHHhhhccccccccc
Confidence            4689999999999864  4799999999     589999999999997631       13344433332 23322 22  


Q ss_pred             cCCCHHHHHHhhhcCcccccceEEecCCChhhHHHH-HHHHHhCCCceEEEeeccC------------------------
Q psy3862          87 KYYTLEEWKAFAVQNPDVIKHVAVSSGISAKDLAGL-KEILAALPEIEYICLDVAN------------------------  141 (671)
Q Consensus        87 ~n~~~Eeq~~~i~~~p~~~~~~~v~~G~~~~d~~rl-~~l~~a~~~~d~Ivld~a~------------------------  141 (671)
                      ...+.|+..+... .+.....+.+.........+.+ ..+-.+......+++|...                        
T Consensus       134 ~~~~~~~~~~~a~-~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~  212 (414)
T d1kbia1         134 ASCSPEEIIEAAP-SDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKK  212 (414)
T ss_dssp             CSSCHHHHHHTCC-CSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------C
T ss_pred             cccchHHHHHHhc-CCccchhhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhc
Confidence            3356666443321 1111111111110000000111 1111111122223332110                        


Q ss_pred             -------CC---------ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCc
Q psy3862         142 -------GY---------TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSD  205 (671)
Q Consensus       142 -------G~---------~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~  205 (671)
                             +.         ..-..+.+++++...+ ..+++-.+.+.+.+..+.++|+|.+.+..-+|....    ...++
T Consensus       213 ~~~~~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~-~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d----~~~~~  287 (414)
T d1kbia1         213 TNVEESQGASRALSKFIDPSLTWKDIEELKKKTK-LPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLD----FSRAP  287 (414)
T ss_dssp             CCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCS-SCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSST----TCCCH
T ss_pred             ccccccccHHHHHHHhcccCCCHHHHHHHhccCC-ceEEeeccchhHHHHHHHhcCCcceeeccccccccc----ccccc
Confidence                   00         0001134666655443 234555667889999999999999988765553200    00001


Q ss_pred             chhhhhc----------cccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcchhhhHH
Q psy3862         206 FFLIQFY----------SCIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYPQFSAVL  265 (671)
Q Consensus       206 ~~~i~~i----------~~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~~~~~  265 (671)
                      ...++-+          ..+|  +.|||=++--+.-+|++|||+|                |+|+|-+.++.
T Consensus       288 ~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaV----------------gigrp~L~~la  343 (414)
T d1kbia1         288 IEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGV----------------GLGRPFLYANS  343 (414)
T ss_dssp             HHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEE----------------EECHHHHHHHH
T ss_pred             ccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEE----------------EEcHHHHHHHH
Confidence            1111111          1234  7999999999999999999999                55678776644

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.19  E-value=3.2e-06  Score=80.95  Aligned_cols=178  Identities=20%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             eEEecCCCcc-ccHHHHHHHHHcCCeEEeecCCCHHHHHHhhhc---Ccc--cccceEEe-cCCChhhHHHHHHHHHhCC
Q psy3862          58 PIIAANMDTV-GTFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQ---NPD--VIKHVAVS-SGISAKDLAGLKEILAALP  130 (671)
Q Consensus        58 Piv~a~M~~v-t~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~---~p~--~~~~~~v~-~G~~~~d~~rl~~l~~a~~  130 (671)
                      |++.+||... ...++|.+..+.|..++.- + +.+. .+.+++   .|.  ..+..... ........+.......+  
T Consensus        13 ~~~~~Pm~~~~~~a~~A~aa~~~Ga~~i~~-~-~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--   87 (222)
T d1y0ea_          13 ALPDEPLHSSFIMSKMALAAYEGGAVGIRA-N-TKED-ILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES--   87 (222)
T ss_dssp             CCTTSTTCCHHHHHHHHHHHHHHTCSEEEE-E-SHHH-HHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH--
T ss_pred             cCCCCCCCCcHHHHHHHHHHHHCCCeEEec-C-CHHH-HHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHc--
Confidence            4566788765 3478888887778777622 2 2332 222321   121  11111000 01111234566667777  


Q ss_pred             CceEEEeeccCC-CC-hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchh
Q psy3862         131 EIEYICLDVANG-YT-QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFL  208 (671)
Q Consensus       131 ~~d~Ivld~a~G-~~-~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~  208 (671)
                      +++.+.++.... +. ....+.++..++..+. .++...+.+.+.+..+.+.|+|.|.+....++..........+.+.+
T Consensus        88 gad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~  166 (222)
T d1y0ea_          88 QCEVIALDATLQQRPKETLDELVSYIRTHAPN-VEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQF  166 (222)
T ss_dssp             TCSEEEEECSCSCCSSSCHHHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHH
T ss_pred             CCCEEEeeccccccccchHHHHHHHHHHhCCc-eEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHH
Confidence            777777664332 22 3344555555555544 45666788999999999999999976442221100000000011222


Q ss_pred             hhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         209 IQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       209 i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +..+.   .+|  ++|||.|.+.++.++++|||||.||
T Consensus       167 i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iG  204 (222)
T d1y0ea_         167 LKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG  204 (222)
T ss_dssp             HHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence            22221   356  7999999999999999999999999

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.07  E-value=1.2e-05  Score=77.36  Aligned_cols=165  Identities=16%  Similarity=0.183  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcC---ccccc-ceEE--ecCCChhhHHHHHHHHHhCCCceEEEeeccCC
Q psy3862          69 TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQN---PDVIK-HVAV--SSGISAKDLAGLKEILAALPEIEYICLDVANG  142 (671)
Q Consensus        69 ~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~---p~~~~-~~~v--~~G~~~~d~~rl~~l~~a~~~~d~Ivld~a~G  142 (671)
                      -.++|.+..+.|..++.. + +.+.. +.+++.   |.... ....  .......+.+.......+  +++.+.+.....
T Consensus        35 v~~~A~a~~~~Ga~~i~~-~-~~~~~-~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gad~i~~~~~~~  109 (230)
T d1yxya1          35 MPLMAKAAQEAGAVGIRA-N-SVRDI-KEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAAL--NIAVIAMDCTKR  109 (230)
T ss_dssp             HHHHHHHHHHHTCSEEEE-E-SHHHH-HHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTT--TCSEEEEECCSS
T ss_pred             HHHHHHHHHHCCCeEEEe-c-ChhhH-HHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhc--CCCEEEEecccc
Confidence            357888877777666522 2 34432 233332   21110 0000  000112234555566666  667776665443


Q ss_pred             C---ChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhc--cccC-
Q psy3862         143 Y---TQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFY--SCIP-  216 (671)
Q Consensus       143 ~---~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i--~~~p-  216 (671)
                      .   ...+.+.+++++..++. .++.+.+.|.+.++.+.++|+|+|.+.+.+++.......  ...+.+....  ..+| 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ipv  186 (230)
T d1yxya1         110 DRHDGLDIASFIRQVKEKYPN-QLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEA--GPDVALIEALCKAGIAV  186 (230)
T ss_dssp             CCTTCCCHHHHHHHHHHHCTT-CEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSS--SCCHHHHHHHHHTTCCE
T ss_pred             cccchhhHHHHHHHHHhcCCC-ceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccc--hHHHHHHHHHhcCCCeE
Confidence            3   45667778877777765 466668899999999999999999887643322110000  0011111111  1356 


Q ss_pred             -CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 -QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 -~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       ++|||.|.+.++.++++|||||.||
T Consensus       187 ia~GGI~t~~d~~~al~~GAd~V~vG  212 (230)
T d1yxya1         187 IAEGKIHSPEEAKKINDLGVAGIVVG  212 (230)
T ss_dssp             EEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred             EEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence             7999999999999999999999999

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.96  E-value=8.4e-06  Score=84.64  Aligned_cols=72  Identities=21%  Similarity=0.328  Sum_probs=56.4

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCC------CCHHHHHHHHHcCCeEEEc--cCCC
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV------GTFEMAKHLAKHGLFTTIH--KYYT  366 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV------~~~~mA~~la~~Gglgvih--r~~~  366 (671)
                      -.||+|.|+|..=.  .-+++||+++|=     ...+..||+=|+|=.-      .+..+|++-.++|-.-.+-  ...+
T Consensus        40 ~~Fd~i~l~pr~L~--d~~~iDlst~~l-----G~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s  112 (359)
T d1goxa_          40 NAFSRILFRPRILI--DVTNIDMTTTIL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSS  112 (359)
T ss_dssp             HGGGGEEECCCCSC--CCSCCBCCEEET-----TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC
T ss_pred             HHHHhcceeccccc--CCCCCCCceeEC-----CcccCCceeeccccccccCCCchHHHhhhhHHhhCCccccccccccc
Confidence            47999999999752  347999999984     5678999999999643      5577899989999777776  4567


Q ss_pred             HHHHHHH
Q psy3862         367 LEEWKAF  373 (671)
Q Consensus       367 ~e~~~~~  373 (671)
                      +|+..+.
T Consensus       113 ~~~~~~~  119 (359)
T d1goxa_         113 VEEVAST  119 (359)
T ss_dssp             HHHHHTT
T ss_pred             chhhHHh
Confidence            8886553

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=5.1e-06  Score=88.24  Aligned_cols=73  Identities=18%  Similarity=0.234  Sum_probs=45.8

Q ss_pred             CCCceeeeecCCCccCCCCcccceeeeeeccCCceeeCcceEecCCCCC-------CCHHHHHHHHH--cCCeEEEc--c
Q psy3862         295 LDFKDVMLRPKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTV-------GTFEMAKHLAK--HGLFTTIH--K  363 (671)
Q Consensus       295 l~fdDVll~P~rst~~sr~eVdl~~~l~~~~s~~~~~~iPiIaa~MDtV-------~~~~mA~~la~--~Gglgvih--r  363 (671)
                      -.||++.|+|..- .+ -++|||+++|-     ...+..||+-|+|-..       .+.+.|.+-+.  .|....+-  .
T Consensus        62 ~aFd~i~l~Pr~L-~d-vs~iDlst~~l-----G~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~  134 (414)
T d1kbia1          62 NAYHRIFFKPKIL-VD-VRKVDISTDML-----GSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLA  134 (414)
T ss_dssp             HGGGGCEECCCCS-CC-CSSCBCCEEET-----TEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTC
T ss_pred             HHHHhceeecccc-CC-CcCCCCceeEC-----CccCCCCEEEChhhhhcccCcchhHHHHHhhHHHhhhcccccccccc
Confidence            3599999999553 23 37999999984     5789999999998331       12233333332  22222222  5


Q ss_pred             CCCHHHHHHHH
Q psy3862         364 YYTLEEWKAFA  374 (671)
Q Consensus       364 ~~~~e~~~~~v  374 (671)
                      ..++++..+..
T Consensus       135 ~~~~~~~~~~a  145 (414)
T d1kbia1         135 SCSPEEIIEAA  145 (414)
T ss_dssp             SSCHHHHHHTC
T ss_pred             ccchHHHHHHh
Confidence            56777776654

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.72  E-value=0.00015  Score=73.55  Aligned_cols=194  Identities=17%  Similarity=0.183  Sum_probs=105.2

Q ss_pred             eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcC-CeEEeec--------------------------------
Q psy3862          41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHG-LFTTIHK--------------------------------   87 (671)
Q Consensus        41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~g-glgvIh~--------------------------------   87 (671)
                      |++++     .+++|+-||+.++.....+.++...+...| |+-++..                                
T Consensus         1 Lsv~~-----~Gl~l~nPi~~Asg~~~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~   75 (312)
T d1gtea2           1 ISVEM-----AGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSF   75 (312)
T ss_dssp             CCEEE-----TTEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCE
T ss_pred             CcEEE-----CCEEcCCCcEECCcCCCCCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCccccccccccc
Confidence            56777     489999999998765666666665566654 2222110                                


Q ss_pred             -------CCCHHHHHHhhhc----CcccccceEEecCCChhhHHH-HHHHHHhCCCceEEEeecc--CC-----------
Q psy3862          88 -------YYTLEEWKAFAVQ----NPDVIKHVAVSSGISAKDLAG-LKEILAALPEIEYICLDVA--NG-----------  142 (671)
Q Consensus        88 -------n~~~Eeq~~~i~~----~p~~~~~~~v~~G~~~~d~~r-l~~l~~a~~~~d~Ivld~a--~G-----------  142 (671)
                             +..++++.+.+..    .|+..-...+..+.+.+|+.. ++.+..+  ++|++.++..  |.           
T Consensus        76 ~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~--gad~lelN~scPn~~~~~~~~~~~~  153 (312)
T d1gtea2          76 LNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEAS--GADALELNLSCPHGMGERGMGLACG  153 (312)
T ss_dssp             EECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHT--TCSEEEEECCCBCCCC-----SBGG
T ss_pred             cccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccC--CCCeEeeccCCCCcccccccchhhh
Confidence                   0123444433321    111110111223456666644 4444444  6777766543  21           


Q ss_pred             -CChHHHHHHHHHHHh--CCCceEEEEEecc-HHHHHHHHHCCCcEEEECcCC-CceEE----EE---ec----ccC---
Q psy3862         143 -YTQTFVDFVRRIREM--YPKHVIIAGNVVT-GEMVEELILSGADVIKVGIGP-GSVCT----TR---LK----NKT---  203 (671)
Q Consensus       143 -~~~~~~~~ik~lr~~--~P~~~li~g~v~t-~e~a~~Li~AGaD~IvVdga~-G~~~~----t~---v~----~~~---  203 (671)
                       +++.+.+.++.+++.  .|...++.....+ .+-++.+.++|+|.|++-..- +..-.    ..   +.    ..+   
T Consensus       154 ~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~  233 (312)
T d1gtea2         154 QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV  233 (312)
T ss_dssp             GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred             hhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccc
Confidence             123344555666553  4665666655443 455778889999999774311 10000    00   00    000   


Q ss_pred             --C-----cchhhhhc----cccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         204 --S-----DFFLIQFY----SCIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       204 --~-----~~~~i~~i----~~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                        +     .+..+..+    ..+|  ..|||-|++.+...|.+|||+|.||
T Consensus       234 sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~  284 (312)
T d1gtea2         234 SGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVC  284 (312)
T ss_dssp             ESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             cCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEEC
Confidence              0     01112112    1255  6999999999999999999999998

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=97.57  E-value=6.6e-05  Score=84.31  Aligned_cols=225  Identities=10%  Similarity=0.159  Sum_probs=128.3

Q ss_pred             hHHhhhhhccccccccCCCCCceEEe-cCCcCCCCCCcceeeeeeecccCCCcccCceEEecCCCccc-c----HHHHHH
Q psy3862           2 FQKFLTAMAQKIINDIKLDFKDVMLR-PKRSTLKSRSEVDITRTFTFRNSGKTYQGVPIIAANMDTVG-T----FEMAKH   75 (671)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~fdDv~lv-P~~~~~~~~~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt-~----~~lA~A   75 (671)
                      |++|.+..    ..+...++-|++-. |...+ +|.++|+-...+.          .|+.+++|..++ +    ..+|.+
T Consensus       388 yk~y~~~i----~~~~~~~LR~Ll~~~~~~~p-I~i~eVE~~~~I~----------k~f~isaMSfGALS~~A~~aLa~g  452 (771)
T d1ea0a2         388 FKKYSEQV----NKRPPMQLRDLLELRSTKAP-VPVDEVESITAIR----------KRFITPGMSMGALSPEAHGTLNVA  452 (771)
T ss_dssp             HHHHHHHH----HTSCCCSGGGGEEECCSSCC-CCGGGSCCHHHHH----------TTEEEEECCBTTBCHHHHHHHHHH
T ss_pred             HHHHHHHH----HhhhhHHHHHhHhhccCCCC-cccccccchhhhh----------eeeccccccccccCHHHHHHHHHH
Confidence            45565533    22333445555544 44444 4678888666664          499999999875 2    458888


Q ss_pred             HHHcCCeEEee-cCCCHHHHH--H-------hhh--------cCcccccc---eEE--e----cC----CChhh-HHHHH
Q psy3862          76 LAKHGLFTTIH-KYYTLEEWK--A-------FAV--------QNPDVIKH---VAV--S----SG----ISAKD-LAGLK  123 (671)
Q Consensus        76 la~~gglgvIh-~n~~~Eeq~--~-------~i~--------~~p~~~~~---~~v--~----~G----~~~~d-~~rl~  123 (671)
                      +++.|+.--.. .++++++..  +       .++        .+|+...+   +.+  +    +|    ++... .+++.
T Consensus       453 a~~~g~~~ntGEGG~~~~~~~~~~~~~~~~~~i~q~asgrfG~~~~~l~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA  532 (771)
T d1ea0a2         453 MNRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIA  532 (771)
T ss_dssp             HHHTTCEEECCTTCCCGGGSSBCTTSCBCCCSEEEECSSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHH
T ss_pred             HHhcCCeeecCCCCCChhhccccCCCcccccccceecCCcCCcCHHHhcccceeEEeeecccccccccccccccCCHHHH
Confidence            88877532222 134444310  0       000        01111111   111  1    11    11111 14555


Q ss_pred             HHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhC---CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce-EEE
Q psy3862         124 EILAALPEIEYICLDVANGY--TQTFVDFVRRIREMY---PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV-CTT  197 (671)
Q Consensus       124 ~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~---P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~-~~t  197 (671)
                      ++....|+++.+.-...|..  .+++.++|.++|+..   |.+.++++...-...+..+.++|+|+|.|||++|.. ...
T Consensus       533 ~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap  612 (771)
T d1ea0a2         533 RLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASP  612 (771)
T ss_dssp             HHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEE
T ss_pred             HhcCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCcccccc
Confidence            56566678887766544443  478888999998754   555677654444566677789999999999977653 332


Q ss_pred             E-eccc--CCcchhhhhcc----------cc--CCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         198 R-LKNK--TSDFFLIQFYS----------CI--PQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       198 ~-v~~~--~~~~~~i~~i~----------~~--p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      . ..+.  .|-..-+..+.          .+  -+.|++.|+..+.-++.+|||++-+|
T Consensus       613 ~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~g  671 (771)
T d1ea0a2         613 QTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIG  671 (771)
T ss_dssp             TTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECC
T ss_pred             HHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHh
Confidence            2 1111  12111111110          12  27999999999999999999999888

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.43  E-value=0.00021  Score=68.30  Aligned_cols=64  Identities=14%  Similarity=0.031  Sum_probs=44.2

Q ss_pred             cHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----c---cCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         170 TGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----C---IPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       170 t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~---~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..+....+..+|+|.+.++...++..        ....+.+++.    .   ..+.+++.|.+.++.+.++|||.+.++
T Consensus        87 ~~~~~~~~~~~gad~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~  157 (230)
T d1yxya1          87 TMTEVDQLAALNIAVIAMDCTKRDRH--------DGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTT  157 (230)
T ss_dssp             SHHHHHHHHTTTCSEEEEECCSSCCT--------TCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECT
T ss_pred             hHHHHHHHHhcCCCEEEEeccccccc--------chhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEee
Confidence            45788889999999998876554320        0011122221    1   126789999999999999999999665

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.01  E-value=0.0015  Score=61.66  Aligned_cols=67  Identities=22%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             ccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc----ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         169 VTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS----CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       169 ~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~----~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+..+.+.++|+|.+.++...+......+      -..+..+.    ..++.+++.|.+.++.+.++|+|.+.++
T Consensus        76 ~~~~~~~~~~~agad~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~  146 (222)
T d1y0ea_          76 ATSKEVDELIESQCEVIALDATLQQRPKETL------DELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTT  146 (222)
T ss_dssp             CSHHHHHHHHHHTCSEEEEECSCSCCSSSCH------HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECT
T ss_pred             ccHHHHHhHHHcCCCEEEeeccccccccchH------HHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEe
Confidence            3568888899999999988664331100000      00111111    1236888999999999999999998654

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=96.56  E-value=0.0065  Score=60.68  Aligned_cols=195  Identities=16%  Similarity=0.146  Sum_probs=101.3

Q ss_pred             eeeeeecccCCCcccCceEEecCCCccccHHHHHHHHHcCCeEE--------------------------eec----CCC
Q psy3862          41 ITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKHLAKHGLFTT--------------------------IHK----YYT   90 (671)
Q Consensus        41 lst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~Ala~~gglgv--------------------------Ih~----n~~   90 (671)
                      |++++     .+++|+-||+.++.....+.+....+...| +|+                          +++    |..
T Consensus         2 Ls~~~-----~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G-~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g   75 (311)
T d1juba_           2 LNTTF-----ANAKFANPFMNASGVHCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG   75 (311)
T ss_dssp             CCEEE-----TTEEESSSEEECTTSSCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred             eeEEE-----CCEecCCCCEECCCCCCCCHHHHHHHHHCC-CcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCch
Confidence            57788     589999999999876666666666666653 322                          111    123


Q ss_pred             HHHHHHhhhcC---cccccceEEecC-CChhhHHHHHHHHHhCCCceEEEeecc--CCC--------ChHHHHHHHHHHH
Q psy3862          91 LEEWKAFAVQN---PDVIKHVAVSSG-ISAKDLAGLKEILAALPEIEYICLDVA--NGY--------TQTFVDFVRRIRE  156 (671)
Q Consensus        91 ~Eeq~~~i~~~---p~~~~~~~v~~G-~~~~d~~rl~~l~~a~~~~d~Ivld~a--~G~--------~~~~~~~ik~lr~  156 (671)
                      +|.+.+.+.+.   .....|+.++++ .+..++....+.+...+..+++.++..  |..        +..+.+.++.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~  155 (311)
T d1juba_          76 FDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT  155 (311)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhc
Confidence            34433332111   001234444443 444444333333443344567655543  221        2334555665544


Q ss_pred             h--CCCceEEEEEecc---HHHHHHHHHCCCcEEEECcCCCceE-EE------Eeccc-----------CC-cchhhhhc
Q psy3862         157 M--YPKHVIIAGNVVT---GEMVEELILSGADVIKVGIGPGSVC-TT------RLKNK-----------TS-DFFLIQFY  212 (671)
Q Consensus       157 ~--~P~~~li~g~v~t---~e~a~~Li~AGaD~IvVdga~G~~~-~t------~v~~~-----------~~-~~~~i~~i  212 (671)
                      .  .|...++..+...   ...++.+.++|+|.+..-..-+... ..      .....           .| .+..+..+
T Consensus       156 ~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i  235 (311)
T d1juba_         156 FFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF  235 (311)
T ss_dssp             TCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH
T ss_pred             ccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHH
Confidence            3  3555555554322   2346667778889886532111000 00      00000           00 01111111


Q ss_pred             -c----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         213 -S----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       213 -~----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                       +    .+|  ..|||-|++.+...+.+|||.|.++
T Consensus       236 ~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~  271 (311)
T d1juba_         236 YTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG  271 (311)
T ss_dssp             HTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeee
Confidence             1    244  6999999999999999999999987

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=96.47  E-value=0.0042  Score=61.93  Aligned_cols=200  Identities=19%  Similarity=0.133  Sum_probs=100.8

Q ss_pred             CcceeeeeeecccCCCcccCceEEecCCCccccHHHHHH--HHHcCCe--EEe---------------------e----c
Q psy3862          37 SEVDITRTFTFRNSGKTYQGVPIIAANMDTVGTFEMAKH--LAKHGLF--TTI---------------------H----K   87 (671)
Q Consensus        37 ~~Vdlst~lt~r~~~~~~l~~Piv~a~M~~vt~~~lA~A--la~~ggl--gvI---------------------h----~   87 (671)
                      ++..|+|+|     .+++|+-||+.++.......++...  .+..|.+  +.+                     +    .
T Consensus         3 ~~~~L~~~~-----~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~   77 (311)
T d1ep3a_           3 ENNRLSVKL-----PGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQ   77 (311)
T ss_dssp             CCTTTCEEE-----TTEEESSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCC
T ss_pred             CCCcceEEE-----CCEEcCCCcEECCCCCCCCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeeccccccccccc
Confidence            577899999     5999999999997543333222222  2233333  222                     1    1


Q ss_pred             CCCHHHHHHhhhc---CcccccceEEecCC-ChhhHHHHHHHHHhCCCceEEEeeccCCC----------ChHHH-HHHH
Q psy3862          88 YYTLEEWKAFAVQ---NPDVIKHVAVSSGI-SAKDLAGLKEILAALPEIEYICLDVANGY----------TQTFV-DFVR  152 (671)
Q Consensus        88 n~~~Eeq~~~i~~---~p~~~~~~~v~~G~-~~~d~~rl~~l~~a~~~~d~Ivld~a~G~----------~~~~~-~~ik  152 (671)
                      |..+|.+.+...+   ......|+.++++- .++++....+.+....+.+.+-++..--+          ..... +.++
T Consensus        78 ~~g~~~~~~~~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~  157 (311)
T d1ep3a_          78 NPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVK  157 (311)
T ss_dssp             BCCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHH
T ss_pred             chhHHHHhhhhhhhhhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHH
Confidence            1234433222211   00012344444443 33444444344443346677766543110          11122 2223


Q ss_pred             HHHHh--CCCceEEEEEe-ccHHHHHHHHHCCCcEEEECcCCCceEE----E---------Eeccc-C-C-cchhhhhcc
Q psy3862         153 RIREM--YPKHVIIAGNV-VTGEMVEELILSGADVIKVGIGPGSVCT----T---------RLKNK-T-S-DFFLIQFYS  213 (671)
Q Consensus       153 ~lr~~--~P~~~li~g~v-~t~e~a~~Li~AGaD~IvVdga~G~~~~----t---------~v~~~-~-~-~~~~i~~i~  213 (671)
                      .++..  .|...++.-+. ...+.++.+.++|+|.+++-...+....    .         .+.-. . + ++..+..+.
T Consensus       158 ~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~  237 (311)
T d1ep3a_         158 ACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA  237 (311)
T ss_dssp             HHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHH
T ss_pred             HHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHh
Confidence            23332  24433443333 3467788889999999987442211000    0         00000 0 0 111222221


Q ss_pred             ---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         214 ---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       214 ---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                         .+|  ..|||-|++.+...+.+|||+|.||
T Consensus       238 ~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig  270 (311)
T d1ep3a_         238 QDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG  270 (311)
T ss_dssp             TTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             hhcceeEEEeCCcCCHHHHHHHHHcCCCEEEec
Confidence               356  5999999999999999999999998

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=96.17  E-value=0.0022  Score=72.07  Aligned_cols=122  Identities=13%  Similarity=0.149  Sum_probs=82.0

Q ss_pred             HHHHHHHHhCCCceEEEeeccCCC--ChHHHHHHHHHHHhC---CCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCc-
Q psy3862         120 AGLKEILAALPEIEYICLDVANGY--TQTFVDFVRRIREMY---PKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGS-  193 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~G~--~~~~~~~ik~lr~~~---P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~-  193 (671)
                      +.+.++....|+.+.+.-...|..  .+++..+|.++|+..   |...++++.......+..+.+||+|+|.|||+.|. 
T Consensus       556 ~~IA~~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGT  635 (809)
T d1ofda2         556 EYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGT  635 (809)
T ss_dssp             HHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCC
T ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCcc
Confidence            445555555677887766555443  478889999998764   55667887665566777778999999999996665 


Q ss_pred             eEEEEe-ccc--CCcchhhhhcc----------cc--CCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         194 VCTTRL-KNK--TSDFFLIQFYS----------CI--PQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       194 ~~~t~v-~~~--~~~~~~i~~i~----------~~--p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...... .+.  .|-..-+....          .+  .+.|++.|+..+.-++.+|||++-+|
T Consensus       636 GAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~g  698 (809)
T d1ofda2         636 GASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFG  698 (809)
T ss_dssp             SSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECS
T ss_pred             ccccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHh
Confidence            333221 111  12111111110          12  27999999999999999999999888

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=96.09  E-value=0.011  Score=58.23  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             EEEEEeccHHHHHHHHHCCCcEEEECc-----CCCceEEE------------EecccCCcchhhhhccccCC----cccc
Q psy3862         163 IIAGNVVTGEMVEELILSGADVIKVGI-----GPGSVCTT------------RLKNKTSDFFLIQFYSCIPQ----AGNV  221 (671)
Q Consensus       163 li~g~v~t~e~a~~Li~AGaD~IvVdg-----a~G~~~~t------------~v~~~~~~~~~i~~i~~~p~----aGnV  221 (671)
                      +++=...+...|+.+.++|+|+|.++-     -+|+..+.            .+++-.++..   ++.++|-    ...-
T Consensus        17 i~~lTayd~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~---~i~dmPf~sy~~~~~   93 (260)
T d1o66a_          17 IAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAM---IVSDLPFGAYQQSKE   93 (260)
T ss_dssp             EEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSE---EEEECCTTSSSSCHH
T ss_pred             EEEEeCCCHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCccee---eecchhhhhhcchhH
Confidence            334456788999999999999999954     44542110            1221122211   1124562    3333


Q ss_pred             ccHHHHHHHHHcCCCEEEEc
Q psy3862         222 VTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       222 ~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+.+..++++|||+||+-
T Consensus        94 ~~~~a~~~~~~~gadavk~e  113 (260)
T d1o66a_          94 QAFAAAAELMAAGAHMVKLE  113 (260)
T ss_dssp             HHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHhhhhhcccc
Confidence            44556667889999999987

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.037  Score=52.73  Aligned_cols=109  Identities=22%  Similarity=0.264  Sum_probs=78.6

Q ss_pred             CChhhHH-HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCC
Q psy3862         114 ISAKDLA-GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG  192 (671)
Q Consensus       114 ~~~~d~~-rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G  192 (671)
                      .+.++.. ..+.+++.  +...+=+-.-   ..+..+.++.+++.||+..+=+|.|.|.+++++++++||++++-   +|
T Consensus        23 ~~~~~~~~~~~al~~~--Gi~~iEitl~---~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivS---P~   94 (212)
T d1vhca_          23 DNADDILPLADTLAKN--GLSVAEITFR---SEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVT---PG   94 (212)
T ss_dssp             SSGGGHHHHHHHHHHT--TCCEEEEETT---STTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEEC---SS
T ss_pred             CCHHHHHHHHHHHHHC--CCCEEEEeCC---ChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEEC---CC
Confidence            3444443 34556666  5555433211   35567888888888999777777899999999999999999953   43


Q ss_pred             ceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         193 SVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       193 ~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .           +-.+++...  .+|..=|+.|..-+..++++|++.+|+=
T Consensus        95 ~-----------~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~F  134 (212)
T d1vhca_          95 L-----------NPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFF  134 (212)
T ss_dssp             C-----------CHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEET
T ss_pred             C-----------CHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEc
Confidence            2           123444442  4677779999999999999999999986

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.028  Score=53.62  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             CChhhH-HHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCC
Q psy3862         114 ISAKDL-AGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPG  192 (671)
Q Consensus       114 ~~~~d~-~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G  192 (671)
                      .+.++. +.++.+++.  +...+=+-.   ......+.++.+++.||+..+=+|.|.+.+++++++++|||+++-   +|
T Consensus        24 ~~~~~a~~~~~al~~~--Gi~~iEitl---~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivS---P~   95 (213)
T d1wbha1          24 KKLEHAVPMAKALVAG--GVRVLNVTL---RTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAIS---PG   95 (213)
T ss_dssp             SSGGGHHHHHHHHHHT--TCCEEEEES---CSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEE---SS
T ss_pred             CCHHHHHHHHHHHHHC--CCCEEEEeC---CChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEEC---CC
Confidence            344443 445666776  555543221   135578889999889999877788899999999999999999963   33


Q ss_pred             ceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         193 SVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       193 ~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .           +..+++...  .+|.-=|+.|..-+..++++|++.+|+=
T Consensus        96 ~-----------~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlF  135 (213)
T d1wbha1          96 L-----------TEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFF  135 (213)
T ss_dssp             C-----------CHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEET
T ss_pred             C-----------CHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEec
Confidence            2           112333332  3555669999999999999999999986

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.054  Score=53.12  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=25.7

Q ss_pred             cCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         449 TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       449 v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      +++.++++.+..=.++..+|| |+| ..|.+++.
T Consensus       180 ~vp~~va~~It~~~~IPtIGI-GAG-~~cDGQvl  211 (262)
T d1m3ua_         180 CVPVELAKRITEALAIPVIGI-GAG-NVTDGQIL  211 (262)
T ss_dssp             SCCHHHHHHHHHHCSSCEEEE-SSC-TTSSEEEE
T ss_pred             cccHHHHHHHHhhhcceeEee-ccc-CCCcceEE
Confidence            578889998755568889996 999 88988764

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=95.65  E-value=0.058  Score=51.47  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=78.3

Q ss_pred             CChhhH-HHHHHHHHhCCCceEE--EeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcC
Q psy3862         114 ISAKDL-AGLKEILAALPEIEYI--CLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG  190 (671)
Q Consensus       114 ~~~~d~-~rl~~l~~a~~~~d~I--vld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga  190 (671)
                      .++++. +.++.+++.  +...+  +++     .....+.++.+++.||+..+=+|.|.|.++++.++++|+++++-   
T Consensus        26 ~~~~~a~~~~~al~~~--Gi~~iEitl~-----~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fivs---   95 (216)
T d1mxsa_          26 AREEDILPLADALAAG--GIRTLEVTLR-----SQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT---   95 (216)
T ss_dssp             SCGGGHHHHHHHHHHT--TCCEEEEESS-----STHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC---
T ss_pred             CCHHHHHHHHHHHHHC--CCCEEEEeCC-----ChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEEC---
Confidence            444554 445566666  55553  333     34577889999889999777788899999999999999999953   


Q ss_pred             CCceEEEEecccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         191 PGSVCTTRLKNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       191 ~G~~~~t~v~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +|.           +..+++...  .+|..=|+.|..-+..++++||+.||+=
T Consensus        96 P~~-----------~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlF  137 (216)
T d1mxsa_          96 PGI-----------TEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLF  137 (216)
T ss_dssp             SSC-----------CHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEET
T ss_pred             CCC-----------cHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEec
Confidence            442           122333332  3556669999999999999999999986

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=95.42  E-value=0.014  Score=55.83  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=44.5

Q ss_pred             cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCcee-eccccCchhHHHHHHcCCcEEE
Q psy3862         388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVV-DGGCTSPGDVAKAMGAGADFVM  466 (671)
Q Consensus       388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~gG~v~t~~~a~~l~aGAd~V~  466 (671)
                      |+.++.|+....++|+|++-+= -+  ....-.+.++.++.-||.+.        ++ .|| |...++.+.+++|+.++-
T Consensus       113 Gv~TpsEi~~A~~~G~~~vK~F-PA--~~~gG~~~lkal~~p~p~~~--------~~ptGG-V~~~N~~~yl~~g~v~~~  180 (212)
T d1vhca_         113 GVNNPMAIEIALEMGISAVKFF-PA--EASGGVKMIKALLGPYAQLQ--------IMPTGG-IGLHNIRDYLAIPNIVAC  180 (212)
T ss_dssp             EECSHHHHHHHHHTTCCEEEET-TT--TTTTHHHHHHHHHTTTTTCE--------EEEBSS-CCTTTHHHHHTSTTBCCE
T ss_pred             CcCCHHHHHHHHHCCCCEEEEc-cc--cccchHHHHHHHhccccCCe--------EEecCC-CCHHHHHHHHhCCCEEEE
Confidence            4456778888899999999975 22  11112234455555566553        33 466 688888889999987664


Q ss_pred             EC
Q psy3862         467 LG  468 (671)
Q Consensus       467 vG  468 (671)
                      .|
T Consensus       181 ~G  182 (212)
T d1vhca_         181 GG  182 (212)
T ss_dssp             EE
T ss_pred             EC
Confidence            44

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.014  Score=55.88  Aligned_cols=70  Identities=16%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             cccChhhHHHHHHcCCcEEEEccccccccccccccccccccccccccccccccCceeeccccCchhHHHHHHcCCcEEEE
Q psy3862         388 GCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVML  467 (671)
Q Consensus       388 ~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~v  467 (671)
                      |+.++.|+....++|++++-+=   ...+.-..+.++.++.-||.+.    |+   -.|| |...++.+.+++|+.++-.
T Consensus       114 Gv~TpsEi~~A~~~G~~~vKlF---PA~~~Gg~~~lkal~~p~p~~~----~~---ptGG-V~~~n~~~yl~~g~v~~~~  182 (213)
T d1wbha1         114 GISTVSELMLGMDYGLKEFKFF---PAEANGGVKALQAIAGPFSQVR----FC---PTGG-ISPANYRDYLALKSVLCIG  182 (213)
T ss_dssp             EESSHHHHHHHHHTTCCEEEET---TTTTTTHHHHHHHHHTTCTTCE----EE---EBSS-CCTTTHHHHHTSTTBSCEE
T ss_pred             CcCCHHHHHHHHHCCCCEEEec---cchhcChHHHHHHhcCcccCCc----ee---eeCC-CCHHHHHHHHhCCCEEEEE
Confidence            4556778888899999999975   2222222344555555666553    22   2466 6788888899999876644


Q ss_pred             C
Q psy3862         468 G  468 (671)
Q Consensus       468 G  468 (671)
                      |
T Consensus       183 G  183 (213)
T d1wbha1         183 G  183 (213)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.13  E-value=0.048  Score=51.50  Aligned_cols=102  Identities=18%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHh-CCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEe
Q psy3862         121 GLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREM-YPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRL  199 (671)
Q Consensus       121 rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~-~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v  199 (671)
                      .++.+++.  +...+=+..   ...+..+.++++++. +|+..+=+|.|.+.++++.++++|||+++   ++|.      
T Consensus        26 ~~~al~~~--Gi~~iEitl---r~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv---sP~~------   91 (202)
T d1wa3a1          26 KALAVFEG--GVHLIEITF---TVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV---SPHL------   91 (202)
T ss_dssp             HHHHHHHT--TCCEEEEET---TSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE---CSSC------
T ss_pred             HHHHHHHc--CCCEEEEec---CCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe---CCCC------
Confidence            34556665  555543221   134567778877654 47776667889999999999999999996   4542      


Q ss_pred             cccCCcchhhhhcc--ccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         200 KNKTSDFFLIQFYS--CIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       200 ~~~~~~~~~i~~i~--~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                           +..+++...  .+|..=|+.|...+..++++|+|.+|+-
T Consensus        92 -----~~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK~f  130 (202)
T d1wa3a1          92 -----DEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLF  130 (202)
T ss_dssp             -----CHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEET
T ss_pred             -----cHHHHHHHHhcCCceeCCcCcHHHHHHHHHCCCCEEEec
Confidence                 122333332  3567779999999999999999999984

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.09  E-value=0.03  Score=55.08  Aligned_cols=32  Identities=19%  Similarity=0.338  Sum_probs=25.1

Q ss_pred             cCchhHHHHHHcCCcEEEECccccCCccCCCcEE
Q psy3862         449 TSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELI  482 (671)
Q Consensus       449 v~t~~~a~~l~aGAd~V~vG~~g~G~s~ctt~~v  482 (671)
                      +++.++++.+..=.++..+|| |+| ..|.+++.
T Consensus       183 ~Vp~~la~~It~~~~IPtIGI-GAG-~~cDGQvL  214 (262)
T d1oy0a_         183 MVPAELATQITGKLTIPTVGI-GAG-PNCDGQVL  214 (262)
T ss_dssp             SCCHHHHHHHHHHCSSCEEEE-SSC-SCSSEEEE
T ss_pred             cccHhHHHHHHhhCCceEEEe-ccC-CCCCeeEE
Confidence            578889988744458888996 999 88988763

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.068  Score=54.44  Aligned_cols=27  Identities=30%  Similarity=0.512  Sum_probs=25.4

Q ss_pred             cC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         215 IP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       215 ~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +|  ..|||-+++.+...|.+|||.|+||
T Consensus       299 ipIig~GGI~s~~Da~e~i~aGAs~VQi~  327 (367)
T d1d3ga_         299 VPIIGVGGVSSGQDALEKIRAGASLVQLY  327 (367)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             ccEEEECCCCCHHHHHHHHHcCCCHHHhh
Confidence            56  5999999999999999999999998

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=94.20  E-value=0.03  Score=53.53  Aligned_cols=60  Identities=17%  Similarity=0.340  Sum_probs=39.0

Q ss_pred             HHHHHHHHHCCCcEEEECc-CCCce-EEEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEE
Q psy3862         171 GEMVEELILSGADVIKVGI-GPGSV-CTTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVI  238 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdg-a~G~~-~~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgv  238 (671)
                      .+.+++|+++|..+|-+-- .++.. .+..+++++|++.+        =||.|-|.+++..++++||+-+
T Consensus        32 ~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~v--------GaGTV~~~~~~~~a~~aGa~Fi   93 (216)
T d1mxsa_          32 LPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCV--------GAGTVLDRSMFAAVEAAGAQFV   93 (216)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEE--------EEECCCSHHHHHHHHHHTCSSE
T ss_pred             HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcce--------eeeeeecHHHHHHHHhCCCCEE
Confidence            4778899999999985532 11100 11122222232211        3999999999999999999977

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.18  E-value=0.16  Score=50.24  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=23.9

Q ss_pred             CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         217 QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       217 ~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ..|||-|++.+...|.+||+.|+|+
T Consensus       247 g~GGI~s~~Da~e~i~aGAs~Vqv~  271 (312)
T d2b4ga1         247 GCGGVYSGEEAFLHILAGASMVQVG  271 (312)
T ss_dssp             EESSCCSHHHHHHHHHHTEEEEEES
T ss_pred             ecCCcCCHHHHHHHHHcCCChheee
Confidence            5899999999999999999999988

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=94.16  E-value=0.71  Score=45.61  Aligned_cols=182  Identities=20%  Similarity=0.232  Sum_probs=105.8

Q ss_pred             eEEecCCCccccHHHHHHHHHcCCeEEeec-CCCHHHH------HHhhhcCcccccceEEe-cCCChhhHHHHHHHHHhC
Q psy3862          58 PIIAANMDTVGTFEMAKHLAKHGLFTTIHK-YYTLEEW------KAFAVQNPDVIKHVAVS-SGISAKDLAGLKEILAAL  129 (671)
Q Consensus        58 Piv~a~M~~vt~~~lA~Ala~~gglgvIh~-n~~~Eeq------~~~i~~~p~~~~~~~v~-~G~~~~d~~rl~~l~~a~  129 (671)
                      .|.-+||.++|+..+.. +.+..|-.+... ..+.+..      .......|. ..|+.+. .|..++++.++.+++.. 
T Consensus         2 ki~LAPM~g~td~~fR~-l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~~~~-e~p~~~Ql~g~~p~~~~~aa~~~~~-   78 (305)
T d1vhna_           2 KVGLAPMAGYTDSAFRT-LAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPH-ERNVAVQIFGSEPNELSEAARILSE-   78 (305)
T ss_dssp             EEEECCCTTTCSHHHHH-HHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTT-CTTEEEEEECSCHHHHHHHHHHHTT-
T ss_pred             eEEEECcCCCccHHHHH-HHHHHCcCEEEECCEEechhhhCChhhHhhccCCC-CCCeEEEEeccchhhhhhhhhhhhh-
Confidence            46779999999987776 455555443321 1222211      111112221 2355442 35666666666666654 


Q ss_pred             CCceEEEeecc----------CC-----CChHHHHHHHHHHHhC--CCceEEE-EE--eccHHHHHHHHHCCCcEEEECc
Q psy3862         130 PEIEYICLDVA----------NG-----YTQTFVDFVRRIREMY--PKHVIIA-GN--VVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       130 ~~~d~Ivld~a----------~G-----~~~~~~~~ik~lr~~~--P~~~li~-g~--v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                       +.+.|-+|..          .|     ++..+.+.++.+++..  |...++- |.  -.+.+.++.|.++|+|.|.|  
T Consensus        79 -~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itv--  155 (305)
T d1vhna_          79 -KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFI--  155 (305)
T ss_dssp             -TCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEE--
T ss_pred             -heeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEe--
Confidence             6677655531          01     1344556667666554  4333332 11  13458899999999999988  


Q ss_pred             CCCceEEEEecccC---Ccchhhhhcc-ccC--CccccccHHHHHHHHH-cCCCEEEEcccCCCccccceecccCcchh
Q psy3862         190 GPGSVCTTRLKNKT---SDFFLIQFYS-CIP--QAGNVVTGEMVEELIL-SGADVIKVGIGPGSVCTTRLKTGVGYPQF  261 (671)
Q Consensus       190 a~G~~~~t~v~~~~---~~~~~i~~i~-~~p--~aGnV~t~~~a~~li~-aGAdgvkVG~~~~~~~~Tr~V~gv~~~~~  261 (671)
                       ||..   . .+.+   .+...+..++ .+|  .-|+|-|.+.+..+++ .|+|||.+|           -...+.|-+
T Consensus       156 -H~Rt---~-~q~~~~~a~~~~i~~~~~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiG-----------Rgal~nP~i  218 (305)
T d1vhna_         156 -HTRT---V-VQSFTGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVA-----------RGAIGRPWI  218 (305)
T ss_dssp             -ESSC---T-TTTTSSCCCGGGGGGSCCSSCEEEESSCCSHHHHHHHHHHHCCSEEEES-----------GGGTTCTTH
T ss_pred             -chhh---h-hhccccchhhhHHHhhhhhhhhhcccccccHHHHHHHHHhcCCCeEehh-----------HHHHHhhhH
Confidence             3321   0 0111   2233333332 466  6999999999999996 799999999           667888854

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.68  E-value=0.13  Score=53.20  Aligned_cols=69  Identities=22%  Similarity=0.234  Sum_probs=44.0

Q ss_pred             HHHHHHHHHCCCcEEEECcCCC-ce-----------EEE-EecccCCcchhhhhc-c----ccC--CccccccHHHHHHH
Q psy3862         171 GEMVEELILSGADVIKVGIGPG-SV-----------CTT-RLKNKTSDFFLIQFY-S----CIP--QAGNVVTGEMVEEL  230 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvVdga~G-~~-----------~~t-~v~~~~~~~~~i~~i-~----~~p--~aGnV~t~~~a~~l  230 (671)
                      .+.++.+.++|+|.+++..... +.           .+- .+++.  .+..+..+ +    .+|  ..|||-|++.+...
T Consensus       283 ~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~--al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~  360 (409)
T d1tv5a1         283 KEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDI--STKFICEMYNYTNKQIPIIASGGIFSGLDALEK  360 (409)
T ss_dssp             HHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHH--HHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred             HHHHHHHHhccccceecccccccccccccccccCCcccchhHHHH--HHHHHHHHHHHcCCCceEEEECCCCCHHHHHHH
Confidence            5777888899999998865111 00           000 01100  01111111 1    255  59999999999999


Q ss_pred             HHcCCCEEEEc
Q psy3862         231 ILSGADVIKVG  241 (671)
Q Consensus       231 i~aGAdgvkVG  241 (671)
                      |.|||+.|+||
T Consensus       361 i~AGAs~VQv~  371 (409)
T d1tv5a1         361 IEAGASVCQLY  371 (409)
T ss_dssp             HHTTEEEEEES
T ss_pred             HHcCCCHHhhh
Confidence            99999999998

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=93.27  E-value=0.031  Score=62.28  Aligned_cols=107  Identities=19%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             ccCCCHHHHHHHHhcCccccc--c--eeeecccChhhHHHH-HHcCCcEEEEcccccccc-------ccccccc-ccccc
Q psy3862         362 HKYYTLEEWKAFAVQNPDVIK--H--VADGGCTSPGDVAKA-MGAGADFVMLGGMFAGHD-------QSGGELT-NIEYM  428 (671)
Q Consensus       362 hr~~~~e~~~~~v~~~~~~~~--~--v~~~~~~~~~~~~~l-~~aG~d~i~id~~a~gh~-------~~~~~~~-~~~~~  428 (671)
                      |-.+|+||++.+|.+++++-.  .  ++-+.+..-++++.. .++|+|+|+|||.--|--       .+++-.+ .-+..
T Consensus       550 ~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~  629 (771)
T d1ea0a2         550 HDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSE  629 (771)
T ss_dssp             TTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHH
Confidence            468899999999977654321  1  222222233555554 689999999997332111       1111000 00000


Q ss_pred             cccc--ccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         429 FFPL--VGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       429 ~~~~--~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                      .+-.  -.-+|+.+.=+.+||.....++++++..|||.|-+|
T Consensus       630 ~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~g  671 (771)
T d1ea0a2         630 VHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIG  671 (771)
T ss_dssp             HHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECC
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHh
Confidence            0000  011223232267899999999999999999999655

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=92.31  E-value=0.046  Score=61.11  Aligned_cols=107  Identities=20%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             ccCCCHHHHHHHHhcCccccc----ceeeecccChhhHHHH-HHcCCcEEEEccccccc--c-----ccccccc-ccccc
Q psy3862         362 HKYYTLEEWKAFAVQNPDVIK----HVADGGCTSPGDVAKA-MGAGADFVMLGGMFAGH--D-----QSGGELT-NIEYM  428 (671)
Q Consensus       362 hr~~~~e~~~~~v~~~~~~~~----~v~~~~~~~~~~~~~l-~~aG~d~i~id~~a~gh--~-----~~~~~~~-~~~~~  428 (671)
                      |-.||+||+..+|.+++++-.    .++-++...-.+++.- .+||+|+|+|||.--|-  +     ++.+-.+ .-+..
T Consensus       577 ~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~  656 (809)
T d1ofda2         577 HDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTE  656 (809)
T ss_dssp             TTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHH
Confidence            457899999999987655321    1222222333444443 68999999999733211  1     1111000 00000


Q ss_pred             cccc--ccccccccCceeeccccCchhHHHHHHcCCcEEEEC
Q psy3862         429 FFPL--VGDMNSYLGGVVDGGCTSPGDVAKAMGAGADFVMLG  468 (671)
Q Consensus       429 ~~~~--~~~~~~~~~~~i~gG~v~t~~~a~~l~aGAd~V~vG  468 (671)
                      .+-.  ...+|+.+.=+.+||.....++++++..|||.|-+|
T Consensus       657 a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~g  698 (809)
T d1ofda2         657 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFG  698 (809)
T ss_dssp             HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECS
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHh
Confidence            0000  112233333367899999999999999999999665

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.30  E-value=1.5  Score=42.77  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHhCCCceEEEEEec--cH----HHHHHHHHCCCcEEEEC
Q psy3862         145 QTFVDFVRRIREMYPKHVIIAGNVV--TG----EMVEELILSGADVIKVG  188 (671)
Q Consensus       145 ~~~~~~ik~lr~~~P~~~li~g~v~--t~----e~a~~Li~AGaD~IvVd  188 (671)
                      ..+.+.++++++.+|...+++....  +.    +.++.+.++|+|+|.+.
T Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN  136 (312)
T d1gtea2          87 AYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELN  136 (312)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             hhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeec
Confidence            4567777777777887766655432  22    45666778888888663

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.83  E-value=0.35  Score=46.55  Aligned_cols=140  Identities=11%  Similarity=0.013  Sum_probs=80.8

Q ss_pred             ChhhHHHHHHHHH-hCCCceEEEeeccCCC------ChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEE
Q psy3862         115 SAKDLAGLKEILA-ALPEIEYICLDVANGY------TQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIK  186 (671)
Q Consensus       115 ~~~d~~rl~~l~~-a~~~~d~Ivld~a~G~------~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~Iv  186 (671)
                      +.+|.-+.-.+-. ...+.+.+-++.....      +...++..+.+.   ..+..+.. .-.+.-.+++|.++|+.++.
T Consensus        77 taeeAv~~A~larE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv---~egF~Vlpy~~~D~v~ak~le~~Gc~~vM  153 (243)
T d1wv2a_          77 DAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLV---KDGFDVMVYTSDDPIIARQLAEIGCIAVM  153 (243)
T ss_dssp             SHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHH---TTTCEEEEEECSCHHHHHHHHHSCCSEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCceEEEeeeccccccCCcHHHHHHHHHHhh---cCceEEEeccCCCHHHHhHHHHcCceeee
Confidence            4444433333322 2345566655543211      123333444432   23344433 33678899999999999999


Q ss_pred             ECcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--
Q psy3862         187 VGIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--  259 (671)
Q Consensus       187 Vdga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--  259 (671)
                      -.+++..+-     +...+.+.+..+.   .+|  +.+||+|+..+..+|++|+|||-|.        |- ++-.+.|  
T Consensus       154 plgsPIGsg-----~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLvn--------sa-Ia~A~dP~~  219 (243)
T d1wv2a_         154 PLAGLIGSG-----LGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMN--------TA-IAHAKDPVM  219 (243)
T ss_dssp             ECSSSTTCC-----CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEES--------HH-HHTSSSHHH
T ss_pred             ecccccccc-----cccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEec--------hH-hhcCCCHHH
Confidence            988774320     0011111222221   245  7999999999999999999999998        33 3555666  


Q ss_pred             hhhhHHHHHHHh
Q psy3862         260 QFSAVLECADAA  271 (671)
Q Consensus       260 ~~~~~~~~~~~~  271 (671)
                      ++.|...+.++-
T Consensus       220 mA~A~~~Av~ag  231 (243)
T d1wv2a_         220 MAEAMKHAIVAG  231 (243)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            455555555443

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.89  E-value=0.13  Score=47.12  Aligned_cols=87  Identities=20%  Similarity=0.078  Sum_probs=55.9

Q ss_pred             HHHHcCCeEEEc--cCCCHHHHHHHHhcCcccccceeeecccChhhHHHHHHcCCcEEEEcccccccccccccccccccc
Q psy3862         351 HLAKHGLFTTIH--KYYTLEEWKAFAVQNPDVIKHVADGGCTSPGDVAKAMGAGADFVMLGGMFAGHDQSGGELTNIEYM  428 (671)
Q Consensus       351 ~la~~Gglgvih--r~~~~e~~~~~v~~~~~~~~~v~~~~~~~~~~~~~l~~aG~d~i~id~~a~gh~~~~~~~~~~~~~  428 (671)
                      .+-+..|+=|++  .+.++|+.++.+.                        +.++|+++|-.....|....-++++.++.
T Consensus        59 ~~l~~~G~eVi~lg~~~~~e~iv~aa~------------------------~~~advI~iSs~~~~~~~~~~~l~~~L~~  114 (168)
T d7reqa2          59 TAYADLGFDVDVGPLFQTPEETARQAV------------------------EADVHVVGVSSLAGGHLTLVPALRKELDK  114 (168)
T ss_dssp             HHHHHTTCEEEECCTTBCHHHHHHHHH------------------------HHTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcceecCCCcCcHHHHHHHHH------------------------ccCCCEEEEecCcccchHHHHHHHHHHHh
Confidence            344557788888  6778888877664                        35677777753334555444444333332


Q ss_pred             ccccccccccccCc--eeeccccCchhHHHHHHcCCcEEEECccccCC
Q psy3862         429 FFPLVGDMNSYLGG--VVDGGCTSPGDVAKAMGAGADFVMLGGMFAGH  474 (671)
Q Consensus       429 ~~~~~~~~~~~~~~--~i~gG~v~t~~~a~~l~aGAd~V~vG~~g~G~  474 (671)
                      .        + ..+  ++.||++...+..++...|+|.|    .|||+
T Consensus       115 ~--------g-~~~v~VivGG~ip~~d~~~l~~~Gv~~i----F~pgt  149 (168)
T d7reqa2         115 L--------G-RPDILITVGGVIPEQDFDELRKDGAVEI----YTPGT  149 (168)
T ss_dssp             T--------T-CTTSEEEEEESCCGGGHHHHHHHTEEEE----ECTTC
T ss_pred             c--------C-CCCeEEEEeCCCCHHHHHHHHhCCCCEE----ECcCC
Confidence            1        0 111  56899888888888889999986    58883

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.10  E-value=1.1  Score=43.18  Aligned_cols=126  Identities=21%  Similarity=0.241  Sum_probs=80.0

Q ss_pred             CceEEecCCCccc------cHHHHHHHHHcCCeEEeecCCCHHHHHHhhhcCc-ccccceE-EecCCChhhHHHHHHHHH
Q psy3862          56 GVPIIAANMDTVG------TFEMAKHLAKHGLFTTIHKYYTLEEWKAFAVQNP-DVIKHVA-VSSGISAKDLAGLKEILA  127 (671)
Q Consensus        56 ~~Piv~a~M~~vt------~~~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~p-~~~~~~~-v~~G~~~~d~~rl~~l~~  127 (671)
                      ++|++.  |++..      ..++....++.|.-|+|=.-+++||..++..... .-+..+. +++..+   .+|++.+.+
T Consensus        80 ~~pivl--m~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~---~~ri~~i~~  154 (248)
T d1geqa_          80 STPIVL--MTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTP---DERLKVIDD  154 (248)
T ss_dssp             CCCEEE--EECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCC---HHHHHHHHH
T ss_pred             CCcEEE--EeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccch---hHHHHHHHh
Confidence            679875  66632      3578887888888899877888887544432111 1122222 233222   367777777


Q ss_pred             hCCCceEEEeeccCC-------CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         128 ALPEIEYICLDVANG-------YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       128 a~~~~d~Ivld~a~G-------~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ...  -++.+-...|       .+..+.+.++++|+.- +..+++| .+.++|+++.+.++|||.++|++
T Consensus       155 ~s~--gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS  221 (248)
T d1geqa_         155 MTT--GFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGS  221 (248)
T ss_dssp             HCS--SEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred             cCC--CeEEEEecccccccchhhhhhHHHHHHHHhhhc-ccceeeecccCCHHHHHHHHhcCCCEEEECH
Confidence            633  3443322222       2466778888887753 4566677 57899999999999999999953

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=89.04  E-value=0.9  Score=43.42  Aligned_cols=44  Identities=27%  Similarity=0.459  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ...+.++++.+......-++|.+.+.+.++.++++|||-|++.+
T Consensus        61 ~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs  104 (253)
T d1thfd_          61 TMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINT  104 (253)
T ss_dssp             HHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             cHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEECh
Confidence            44566666654432224567788999999999999999999876

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=88.71  E-value=0.88  Score=43.41  Aligned_cols=97  Identities=24%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcC--------------CCce----EE--EE------
Q psy3862         145 QTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIG--------------PGSV----CT--TR------  198 (671)
Q Consensus       145 ~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga--------------~G~~----~~--t~------  198 (671)
                      ....+.++++.+..+....++|.+.+.+.++.++++|+|-|++.+.              -|..    ..  ..      
T Consensus        60 ~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~  139 (251)
T d1ka9f_          60 AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPE  139 (251)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred             hhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceE
Confidence            3445667776555433345777889999999999999999999772              1221    00  00      


Q ss_pred             ec-------------------------------------ccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCC
Q psy3862         199 LK-------------------------------------NKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGAD  236 (671)
Q Consensus       199 v~-------------------------------------~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAd  236 (671)
                      +.                                     ..-+++.+++.+.   .+|  ++||+.+.+....+...|++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g~~  219 (251)
T d1ka9f_         140 VHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAE  219 (251)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             EEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhcceeEEEecCCCCHHHHHHHHHCCCC
Confidence            00                                     0013344444442   245  69999999999999999999


Q ss_pred             EEEEc
Q psy3862         237 VIKVG  241 (671)
Q Consensus       237 gvkVG  241 (671)
                      |+-+|
T Consensus       220 gviig  224 (251)
T d1ka9f_         220 AALAA  224 (251)
T ss_dssp             EEEES
T ss_pred             EEEEh
Confidence            99887

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.45  E-value=0.19  Score=47.28  Aligned_cols=105  Identities=17%  Similarity=0.253  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCC--CceE
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGP--GSVC  195 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~--G~~~  195 (671)
                      +.+.++..+++  ++++++   +++....+.+..++.  .    ......+.|+..+..++++|+|++++==++  |..-
T Consensus        71 ~~~~~~~a~~a--Ga~fiv---sP~~~~~v~~~~~~~--~----i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~~G~~~  139 (202)
T d1wa3a1          71 SVEQCRKAVES--GAEFIV---SPHLDEEISQFCKEK--G----VFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQF  139 (202)
T ss_dssp             SHHHHHHHHHH--TCSEEE---CSSCCHHHHHHHHHH--T----CEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHH
T ss_pred             cHHHHHHHHhh--cccEEe---CCCCcHHHHHHHHhc--C----CceeCCcCcHHHHHHHHHCCCCEEEecchhhcCHHH
Confidence            34566667777  888886   445556666666542  1    222334578888888999999999762211  0001


Q ss_pred             EEEecccCCcchhhhhccccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         196 TTRLKNKTSDFFLIQFYSCIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       196 ~t~v~~~~~~~~~i~~i~~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ++.++.-+|+++++       ..||| +.+.+.+.+++||.++=+|
T Consensus       140 lk~l~~p~p~i~~i-------ptGGI-~~~n~~~~l~aga~avg~G  177 (202)
T d1wa3a1         140 VKAMKGPFPNVKFV-------PTGGV-NLDNVCEWFKAGVLAVGVG  177 (202)
T ss_dssp             HHHHHTTCTTCEEE-------EBSSC-CTTTHHHHHHHTCSCEEEC
T ss_pred             HHHHhCcccCCcEE-------eeCCC-CHHHHHHHHHCCCeEEEEc
Confidence            11122212222111       48888 8899999999999987544

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=88.29  E-value=0.21  Score=47.29  Aligned_cols=113  Identities=20%  Similarity=0.254  Sum_probs=61.4

Q ss_pred             HHHHHHHHhCCCceEEEeecc---CCCChHHHHHHHHHHHhCCCce-EEE-EE-eccH----HHHHHHHHCCCcEEEECc
Q psy3862         120 AGLKEILAALPEIEYICLDVA---NGYTQTFVDFVRRIREMYPKHV-IIA-GN-VVTG----EMVEELILSGADVIKVGI  189 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a---~G~~~~~~~~ik~lr~~~P~~~-li~-g~-v~t~----e~a~~Li~AGaD~IvVdg  189 (671)
                      ..++..++...++--++++..   .|..+.+.+.++.+++..+... ++- -. --+.    ...+.++++|+|+|+..+
T Consensus        74 ~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTST  153 (211)
T d1ub3a_          74 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTST  153 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             HHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhccceEEecC
Confidence            345556665222222344422   2334555556666666554322 221 00 0122    445677889999998876


Q ss_pred             CCCceEEEEecccCCcchhhhhc-cc----cC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         190 GPGSVCTTRLKNKTSDFFLIQFY-SC----IP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       190 a~G~~~~t~v~~~~~~~~~i~~i-~~----~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      +-+...        .+...+..+ ..    +.  ++|||-|.+++.+++++||+  |+|.
T Consensus       154 G~~~~g--------at~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~--riGt  203 (211)
T d1ub3a_         154 GFGPRG--------ASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGAS--RLGT  203 (211)
T ss_dssp             SSSSCC--------CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS--EEEE
T ss_pred             CCCCCC--------CCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhh--Hhcc
Confidence            432110        011111111 11    11  79999999999999999999  6774

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.07  E-value=0.22  Score=47.56  Aligned_cols=60  Identities=30%  Similarity=0.376  Sum_probs=40.3

Q ss_pred             HHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhcc-----ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         172 EMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYS-----CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~-----~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ...+.++++|+|+|+..++-+....        ++.-+..+.     .+.  ++|||-|.+++.+++++||+  |+|
T Consensus       136 ~a~~~a~~aGadfiKTSTG~~~~ga--------t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~--RiG  202 (225)
T d1mzha_         136 KAVEICIEAGADFIKTSTGFAPRGT--------TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGAD--RIG  202 (225)
T ss_dssp             HHHHHHHHHTCSEEECCCSCSSSCC--------CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS--EEE
T ss_pred             HHHHHHHHcccceEeecCCCCCCCC--------CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchh--hee
Confidence            4567788999999998765332111        111111111     122  79999999999999999999  666

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.89  E-value=0.74  Score=41.87  Aligned_cols=69  Identities=22%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             hhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         117 KDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       117 ~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      +..+.+.+.++.  ++|.|-+|-.  .++.+.+.++.++...|...+.+....+.+.++...+.|||+|.+..
T Consensus        86 ~~~~e~~~a~~~--g~d~i~LDn~--~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~g~  154 (170)
T d1o4ua1          86 ENLEDALRAVEA--GADIVMLDNL--SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSR  154 (170)
T ss_dssp             SSHHHHHHHHHT--TCSEEEEESC--CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGG
T ss_pred             CcHHHHHHHHhc--CccEEEEcCc--ChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEcCc
Confidence            346777777887  7789999833  56777777777777788887777666778888888999999997643

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=87.24  E-value=2.4  Score=40.42  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECcCC-CceEEEEecccCCcchhhhhcc---ccC--C
Q psy3862         145 QTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGIGP-GSVCTTRLKNKTSDFFLIQFYS---CIP--Q  217 (671)
Q Consensus       145 ~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdga~-G~~~~t~v~~~~~~~~~i~~i~---~~p--~  217 (671)
                      ...++..+.|.+.   +..+-. --.+...+++|.++|+.+|---+++ |+.      +-..+.+-++.|-   .+|  +
T Consensus       112 ~etl~Aae~Lv~e---GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGSg------~Gl~n~~~l~~i~~~~~vPvIv  182 (251)
T d1xm3a_         112 VETLKASEQLLEE---GFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG------QGILNPLNLSFIIEQAKVPVIV  182 (251)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC------CCCSCHHHHHHHHHHCSSCBEE
T ss_pred             HHHHHHHHHHHhC---CcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhcC------CCcCChHHHHHHHhcCCccEEE
Confidence            4455556665432   222222 3367899999999999999776633 111      0011222222331   355  7


Q ss_pred             ccccccHHHHHHHHHcCCCEEEEcccCCCccccceecccCcc--hhhhHHHHHHHhh
Q psy3862         218 AGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKTGVGYP--QFSAVLECADAAH  272 (671)
Q Consensus       218 aGnV~t~~~a~~li~aGAdgvkVG~~~~~~~~Tr~V~gv~~~--~~~~~~~~~~~~~  272 (671)
                      -+||++...+..++++|||||.|.        |- ++....|  +..|...+.++-+
T Consensus       183 DAGIG~pSdAa~AMElG~daVLvN--------TA-IA~a~dPv~MA~A~~~Av~AGR  230 (251)
T d1xm3a_         183 DAGIGSPKDAAYAMELGADGVLLN--------TA-VSGADDPVKMARAMKLAVEAGR  230 (251)
T ss_dssp             ESCCCSHHHHHHHHHTTCSEEEES--------HH-HHTSSSHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHccCCEEEec--------hh-hhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998        44 3666777  5566666555544

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.03  E-value=1.5  Score=41.75  Aligned_cols=63  Identities=27%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             HHHHHHHHHCCCcEE-EEC--cCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVI-KVG--IGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~I-vVd--ga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+.+.+.|+|-+ ++|  .+...        ..+.+.++..+.   .+|  ++|||-+.+.++.++.+|||-|-+|
T Consensus        35 ~~~a~~~~~~gadei~ivDl~~~~~~--------~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~  105 (252)
T d1h5ya_          35 VEMAVRYEEEGADEIAILDITAAPEG--------RATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN  105 (252)
T ss_dssp             HHHHHHHHHTTCSCEEEEECCCCTTT--------HHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHHHHHHHCCCCEEEEEeccccccc--------cccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEec
Confidence            377888899999966 222  22110        012233333332   357  7999999999999999999999887

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=86.53  E-value=0.47  Score=44.74  Aligned_cols=72  Identities=28%  Similarity=0.411  Sum_probs=42.0

Q ss_pred             ccceeeecccChhhHHHH----HHcCCcEEEEccccccccccccccccccccccccccccccccCc----eeeccccCch
Q psy3862         381 IKHVADGGCTSPGDVAKA----MGAGADFVMLGGMFAGHDQSGGELTNIEYMFFPLVGDMNSYLGG----VVDGGCTSPG  452 (671)
Q Consensus       381 ~~~v~~~~~~~~~~~~~l----~~aG~d~i~id~~a~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~gG~v~t~  452 (671)
                      ++.+...+-.+++++.++    +++|+|||.   ++.|+....-.+        +.+..++++++.    -..|| +-|.
T Consensus       120 lKVIlEt~~L~~~ei~~a~~~a~~aGadfiK---TSTG~~~~gat~--------e~v~~m~~~~~~~~~iKasGG-Irt~  187 (211)
T d1ub3a_         120 LKVILETGYFSPEEIARLAEAAIRGGADFLK---TSTGFGPRGASL--------EDVALLVRVAQGRAQVKAAGG-IRDR  187 (211)
T ss_dssp             EEEECCGGGSCHHHHHHHHHHHHHHTCSEEE---CCCSSSSCCCCH--------HHHHHHHHHHTTSSEEEEESS-CCSH
T ss_pred             eEEEeccccCCHHHHHHHHHHHHHhccceEE---ecCCCCCCCCCH--------HHHHHHHHHhCCCceEECcCC-CCCH
Confidence            344444555566666554    689999999   777764321111        122233444433    34566 5677


Q ss_pred             hHHH-HHHcCCcE
Q psy3862         453 DVAK-AMGAGADF  464 (671)
Q Consensus       453 ~~a~-~l~aGAd~  464 (671)
                      +.+. ++.+||+-
T Consensus       188 ~~a~~~l~aGa~r  200 (211)
T d1ub3a_         188 ETALRMLKAGASR  200 (211)
T ss_dssp             HHHHHHHHTTCSE
T ss_pred             HHHHHHHHHhhhH
Confidence            7776 57999984

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=86.20  E-value=10  Score=34.39  Aligned_cols=104  Identities=17%  Similarity=0.251  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHH---hCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCce
Q psy3862         118 DLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIRE---MYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSV  194 (671)
Q Consensus       118 d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~---~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~  194 (671)
                      +.+.+.++++.  +++++.+-.-+-......+..+++++   .+ ...++. |    +..+.+.+.|+|-|=+..     
T Consensus        19 ~~~~v~~~l~~--Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~-~~~lii-n----d~~~lA~~~~adGvHl~~-----   85 (206)
T d1xi3a_          19 EVESVREALEG--GATAIQMRIKNAPTREMYEIGKTLRQLTREY-DALFFV-D----DRVDVALAVDADGVQLGP-----   85 (206)
T ss_dssp             HHHHHHHHHHT--TCSEEEECCCSCCHHHHHHHHHHHHHHHHHT-TCEEEE-E----SCHHHHHHHTCSEEEECT-----
T ss_pred             HHHHHHHHHHc--CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCeEEe-c----hhHHHHHhccCceEeecc-----
Confidence            46778888887  78888775443333445555555543   34 233333 2    344555678999883311     


Q ss_pred             EEEEecccCCcchhhhhc-cccCCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         195 CTTRLKNKTSDFFLIQFY-SCIPQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       195 ~~t~v~~~~~~~~~i~~i-~~~p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                             ...+....... ...-+...+-+.+.++.+...|||-+-+|
T Consensus        86 -------~~~~~~~~~~~~~~~iig~s~h~~~e~~~a~~~g~DYi~~g  126 (206)
T d1xi3a_          86 -------EDMPIEVAKEIAPNLIIGASVYSLEEALEAEKKGADYLGAG  126 (206)
T ss_dssp             -------TSCCHHHHHHHCTTSEEEEEESSHHHHHHHHHHTCSEEEEE
T ss_pred             -------ccccHhhhhhcccccccccccCCHHHHHHHHhcCCCEEEec
Confidence                   11110000000 00114556678888999999999966444

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=86.05  E-value=3.8  Score=38.78  Aligned_cols=63  Identities=25%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             HHHHHHHHHCCCcEEEE-Cc--CCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         171 GEMVEELILSGADVIKV-GI--GPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       171 ~e~a~~Li~AGaD~IvV-dg--a~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      .+.|+.+.+.|+|-+.+ |.  +-+.        ..+.+.++.-+.   .+|  ++|||-+.+.++.++++|||-|-+|
T Consensus        33 ~~~a~~~~~~g~dei~ivDld~~~~~--------~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviig  103 (253)
T d1thfd_          33 VELGKFYSEIGIDELVFLDITASVEK--------RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN  103 (253)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSCSSSH--------HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHcCCCEEEEEeecccccC--------cccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEC
Confidence            37788899999998744 22  1110        011222332221   256  7999999999999999999999888

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.57  E-value=1.6  Score=39.35  Aligned_cols=80  Identities=23%  Similarity=0.241  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhhhccc----cC--Cccc
Q psy3862         147 FVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQFYSC----IP--QAGN  220 (671)
Q Consensus       147 ~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~~i~~----~p--~aGn  220 (671)
                      +.+.++++++..|...+ .--+.+.++++.++++|+|+|-+|--.             +-.+.+.+..    +.  ++||
T Consensus        66 ~~~~~~~~~~~~~~~~I-eVEv~~~~~~~~a~~~g~diImLDN~~-------------pe~~~~av~~i~~~~~lEaSGg  131 (167)
T d1qapa1          66 VRQAVEKAFWLHPDVPV-EVEVENLDELDDALKAGADIIMLDNFN-------------TDQMREAVKRVNGQARLEVSGN  131 (167)
T ss_dssp             HHHHHHHHHHHSTTSCE-EEEESSHHHHHHHHHTTCSEEEESSCC-------------HHHHHHHHHTTCTTCCEEECCC
T ss_pred             hhhhhHHHhhcCCCceE-EEecCcHHHHHHHHhcCCcEEEecCCC-------------HHHHHHHHHhcCCceEEEEeCC
Confidence            44556666656665433 335678899999999999999876421             1111111111    11  7888


Q ss_pred             cccHHHHHHHHHcCCCEEEEc
Q psy3862         221 VVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       221 V~t~~~a~~li~aGAdgvkVG  241 (671)
                      | +.+.+.+....|+|.|-+|
T Consensus       132 I-~~~ni~~ya~~GVD~IS~g  151 (167)
T d1qapa1         132 V-TAETLREFAETGVDFISVG  151 (167)
T ss_dssp             S-CHHHHHHHHHTTCSEEECS
T ss_pred             C-CHHHHHHHHHcCCCEEECC
Confidence            8 7888899999999999776

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.38  E-value=1.8  Score=41.76  Aligned_cols=128  Identities=15%  Similarity=0.235  Sum_probs=74.4

Q ss_pred             ccCceEEecCCCccccH--HHHHHHHHcCCeEEeecCCCHHHHHHhhhcC-cccccceE-EecCCChhhHHHHHHHHHhC
Q psy3862          54 YQGVPIIAANMDTVGTF--EMAKHLAKHGLFTTIHKYYTLEEWKAFAVQN-PDVIKHVA-VSSGISAKDLAGLKEILAAL  129 (671)
Q Consensus        54 ~l~~Piv~a~M~~vt~~--~lA~Ala~~gglgvIh~n~~~Eeq~~~i~~~-p~~~~~~~-v~~G~~~~d~~rl~~l~~a~  129 (671)
                      ...+|++.  |++....  .....+++.|.-|+|=.-+++||...+.... ..-+.++. +++..   ..+|++++.+..
T Consensus        91 ~~~~p~il--m~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt---~~~Ri~~i~~~a  165 (261)
T d1rd5a_          91 ELSCPVVL--LSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAI---PEDRMKEITKAS  165 (261)
T ss_dssp             GCSSCEEE--ECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTS---CHHHHHHHHHHC
T ss_pred             cccCceee--eeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCC---chhHHHHHHhcC
Confidence            34677764  4443211  1122245666668877777887754443211 11122222 23322   346888887764


Q ss_pred             CCceEEEeeccCC-------CChHHHHHHHHHHHhCCCceEEEE-EeccHHHHHHHHHCCCcEEEECc
Q psy3862         130 PEIEYICLDVANG-------YTQTFVDFVRRIREMYPKHVIIAG-NVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       130 ~~~d~Ivld~a~G-------~~~~~~~~ik~lr~~~P~~~li~g-~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      .+  ++-.-...|       .+..+.+.++++|+.. +..+++| .+.++++++.+.++|||.++|++
T Consensus       166 ~g--FvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS  230 (261)
T d1rd5a_         166 EG--FVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGS  230 (261)
T ss_dssp             CS--CEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred             cc--hhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence            33  332222222       2456777888887654 4567777 67899999999999999999954

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.33  E-value=3.1  Score=39.75  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=59.8

Q ss_pred             CceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECcCCCceEEEEecccCCcchhhh
Q psy3862         131 EIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGIGPGSVCTTRLKNKTSDFFLIQ  210 (671)
Q Consensus       131 ~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~~~~i~  210 (671)
                      ++|++.+-.+-=....+.++++..++..  ...+ --+.+++.++...++|+++|-|..-.=+.....+.   ....+.+
T Consensus       125 GADaiLLI~~~L~~~~l~~l~~~a~~lg--l~~L-vEvh~~~El~~a~~~~a~iIGINnRnL~t~~vd~~---~~~~L~~  198 (247)
T d1a53a_         125 GADTVLLIVKILTERELESLLEYARSYG--MEPL-IEINDENDLDIALRIGARFIGINSRDLETLEINKE---NQRKLIS  198 (247)
T ss_dssp             TCSEEEEEGGGSCHHHHHHHHHHHHTTT--CCCE-EEECSHHHHHHHHHTTCSEEEEESBCTTTCCBCHH---HHHHHHH
T ss_pred             hcchhhhhhhhccHHHHHHHHHHHHHHh--hhHH-hhcCCHHHHHHHHhCCCCeEeeeccChhhhhhhhh---HHHHHHh
Confidence            7787766533111133344444333221  1111 25678999999999999999553222110000000   0122222


Q ss_pred             hcc-cc-C-CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         211 FYS-CI-P-QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       211 ~i~-~~-p-~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      ++. .. + ..+||-|.+.++.+.++|+||+.||
T Consensus       199 ~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIG  232 (247)
T d1a53a_         199 MIPSNVVKVAESGISERNEIEELRKLGVNAFLIG  232 (247)
T ss_dssp             HSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEEC
T ss_pred             hCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence            221 11 1 6899999999999999999999999

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=84.67  E-value=1.4  Score=42.80  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             eccccCchhHHHHHHcCCcEEEECc
Q psy3862         445 DGGCTSPGDVAKAMGAGADFVMLGG  469 (671)
Q Consensus       445 ~gG~v~t~~~a~~l~aGAd~V~vG~  469 (671)
                      .||+....++.+.+.+|||+|++|.
T Consensus       247 ~GGI~s~~Da~~~i~~GAd~V~ig~  271 (311)
T d1ep3a_         247 MGGVANAQDVLEMYMAGASAVAVGT  271 (311)
T ss_dssp             CSSCCSHHHHHHHHHHTCSEEEECT
T ss_pred             eCCcCCHHHHHHHHHcCCCEEEecH
Confidence            5775444566778899999999984

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.27  E-value=0.88  Score=41.27  Aligned_cols=68  Identities=21%  Similarity=0.216  Sum_probs=52.8

Q ss_pred             hhHHHHHHHHHhCCCceEEEeeccCCCChHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEEC
Q psy3862         117 KDLAGLKEILAALPEIEYICLDVANGYTQTFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVG  188 (671)
Q Consensus       117 ~d~~rl~~l~~a~~~~d~Ivld~a~G~~~~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVd  188 (671)
                      +.++.+.+.+++  ++|.|-+|-.  .++...+.++.++..+|...+.+....+.+.++...+.|+|+|.+.
T Consensus        87 ~s~~q~~~a~~~--~~diImLDN~--sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~g  154 (169)
T d1qpoa1          87 DSLEQLDAVLPE--KPELILLDNF--AVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVG  154 (169)
T ss_dssp             SSHHHHHHHGGG--CCSEEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECG
T ss_pred             ccHHHhhhhhhc--CCcEEEecCc--ChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEECC
Confidence            446777778777  7899999833  5677888888777778887776655567889999999999999664

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=83.75  E-value=3.4  Score=39.09  Aligned_cols=62  Identities=26%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             HHHHHHHHCCCcEEEE---CcCCCceEEEEecccCCcchhhhhcc---ccC--CccccccHHHHHHHHHcCCCEEEEc
Q psy3862         172 EMVEELILSGADVIKV---GIGPGSVCTTRLKNKTSDFFLIQFYS---CIP--QAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       172 e~a~~Li~AGaD~IvV---dga~G~~~~t~v~~~~~~~~~i~~i~---~~p--~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +.|+.+.+.|+|-+.+   |.+-+.        ..+...++.-+.   .+|  ++|||-+.+.++.++++||+-|-+|
T Consensus        34 ~~a~~~~~~g~dei~iiDl~~~~~~--------~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~  103 (251)
T d1ka9f_          34 EAARAYDEAGADELVFLDISATHEE--------RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN  103 (251)
T ss_dssp             HHHHHHHHHTCSCEEEEECCSSTTC--------HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHcCCCEEEEEeccccccc--------chhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEEC
Confidence            6778888899986633   112110        011222333332   246  7999999999999999999999888

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.61  E-value=3.8  Score=38.81  Aligned_cols=44  Identities=34%  Similarity=0.493  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHCCCcEEEECc
Q psy3862         146 TFVDFVRRIREMYPKHVIIAGNVVTGEMVEELILSGADVIKVGI  189 (671)
Q Consensus       146 ~~~~~ik~lr~~~P~~~li~g~v~t~e~a~~Li~AGaD~IvVdg  189 (671)
                      ...+.++++.+.......++|.+.+.+.++.++++|+|-|++.+
T Consensus        63 ~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s  106 (252)
T d1h5ya_          63 TFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNT  106 (252)
T ss_dssp             HHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             cHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecc
Confidence            34466776654432224567788899999999999999999976

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.20  E-value=0.68  Score=44.72  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             HHHHHHHHhCCCceEEEeeccC---CCChHHHHHHHHHHHhCCCc-eEEE-EE-ecc----HHHHHHHHHCCCcEEEECc
Q psy3862         120 AGLKEILAALPEIEYICLDVAN---GYTQTFVDFVRRIREMYPKH-VIIA-GN-VVT----GEMVEELILSGADVIKVGI  189 (671)
Q Consensus       120 ~rl~~l~~a~~~~d~Ivld~a~---G~~~~~~~~ik~lr~~~P~~-~li~-g~-v~t----~e~a~~Li~AGaD~IvVdg  189 (671)
                      ..++..+....+.--++++...   |..+.+.+-++.+++..+.. .++- -. --+    ....+.++++|+|+|+-.+
T Consensus       107 ~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTST  186 (251)
T d1o0ya_         107 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTST  186 (251)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC
T ss_pred             HHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHhCcceeeccC
Confidence            3455666663232234555322   34455556666666554322 2221 11 011    2446677889999998866


Q ss_pred             CCCceEEEEecccCCcchhhhhcc-----cc--CCccccccHHHHHHHHHcCCCEEEEc
Q psy3862         190 GPGSVCTTRLKNKTSDFFLIQFYS-----CI--PQAGNVVTGEMVEELILSGADVIKVG  241 (671)
Q Consensus       190 a~G~~~~t~v~~~~~~~~~i~~i~-----~~--p~aGnV~t~~~a~~li~aGAdgvkVG  241 (671)
                      +=+...        .+...+..+.     .+  -++|||-|.+++.+++++||+  |+|
T Consensus       187 Gf~~~g--------at~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~--riG  235 (251)
T d1o0ya_         187 GFGTGG--------ATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGAD--RIG  235 (251)
T ss_dssp             SSSSCC--------CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCS--EEE
T ss_pred             CCCCCC--------cCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhH--HhC
Confidence            422110        0111111111     11  179999999999999999999  556

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.12  E-value=0.42  Score=45.81  Aligned_cols=64  Identities=22%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             HHHHHHHHCCCcEEEECcCCCc-eEEEEecccCCcchhhhhcc--ccC--CccccccHHHHHHHHHcCCCEEEEcc
Q psy3862         172 EMVEELILSGADVIKVGIGPGS-VCTTRLKNKTSDFFLIQFYS--CIP--QAGNVVTGEMVEELILSGADVIKVGI  242 (671)
Q Consensus       172 e~a~~Li~AGaD~IvVdga~G~-~~~t~v~~~~~~~~~i~~i~--~~p--~aGnV~t~~~a~~li~aGAdgvkVG~  242 (671)
                      ...+..+++|+|+|+-.++-+. ..+..     ....+...+.  .+.  ++|||-|.+++.+++++||+  |+|-
T Consensus       152 ~a~~~a~~aGadFVKTSTG~~~~gat~~-----~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~--rIGt  220 (234)
T d1n7ka_         152 LLVDSSRRAGADIVKTSTGVYTKGGDPV-----TVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGAD--IIGT  220 (234)
T ss_dssp             HHHHHHHHTTCSEEESCCSSSCCCCSHH-----HHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCS--EEEE
T ss_pred             HHHHHHHHhhhhheeecccccCCCCCHH-----HHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCc--eeec
Confidence            4455677899999987554211 11100     0000111111  122  79999999999999999999  6773

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.04  E-value=3.2  Score=41.03  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             cccccccCc-eeeccccCchhHHH-HHHcC-CcEEEECc
Q psy3862         434 GDMNSYLGG-VVDGGCTSPGDVAK-AMGAG-ADFVMLGG  469 (671)
Q Consensus       434 ~~~~~~~~~-~i~gG~v~t~~~a~-~l~aG-Ad~V~vG~  469 (671)
                      ..+|+...- ++..|.+.+.+.++ +++.| ||.|.+|.
T Consensus       273 ~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR  311 (330)
T d1ps9a1         273 RKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMAR  311 (330)
T ss_dssp             HHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEEST
T ss_pred             HHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhH
Confidence            334544432 66677778888877 67888 89998875

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=2.8  Score=41.43  Aligned_cols=111  Identities=17%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             CceEEEeeccCCCC------------------------hHHHHHHHHHHHhCC----CceEEEEEe-----c----cHHH
Q psy3862         131 EIEYICLDVANGYT------------------------QTFVDFVRRIREMYP----KHVIIAGNV-----V----TGEM  173 (671)
Q Consensus       131 ~~d~Ivld~a~G~~------------------------~~~~~~ik~lr~~~P----~~~li~g~v-----~----t~e~  173 (671)
                      +.|.|-+..+||+.                        +-..+.++.+|+..+    ....+.+.-     .    +.+.
T Consensus       154 GfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~  233 (330)
T d1ps9a1         154 GYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVEL  233 (330)
T ss_dssp             TCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHH
T ss_pred             CcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHH
Confidence            78888888888761                        124455666665432    223343321     1    2466


Q ss_pred             HHHHHHCCCcEEEECcCCCceEEEEecccCCc---chhhhhcc---ccC--CccccccHHHHHHHHHcC-CCEEEEc
Q psy3862         174 VEELILSGADVIKVGIGPGSVCTTRLKNKTSD---FFLIQFYS---CIP--QAGNVVTGEMVEELILSG-ADVIKVG  241 (671)
Q Consensus       174 a~~Li~AGaD~IvVdga~G~~~~t~v~~~~~~---~~~i~~i~---~~p--~aGnV~t~~~a~~li~aG-AdgvkVG  241 (671)
                      ++.|.++|+|++.+..+.-...........+.   ......++   .+|  .+|++-|.+.+..+|+.| ||.|=+|
T Consensus       234 ~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~g  310 (330)
T d1ps9a1         234 AQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMA  310 (330)
T ss_dssp             HHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEES
T ss_pred             HHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhh
Confidence            77888899999976432211111111111111   11122222   246  699999999999999998 9987444