Psyllid ID: psy38

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MVTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcEEEEEEccccEEEEEEEcccccccHHHHHHHHHHccccEEEEEEccccHHHccHHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccccccEEEEEEEEEEcccEEEEEEEEEEcccHHHcccccHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccccEEEEEEcHHHcccccccEccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDitsrasfehIPVWMMEAKrhiephrpvfaLVGCKldllqsgvprevSEAEAKAFAsqndilhfetssrsgfqveNAFTAVTQEIYNrvqsgdykvedgwegiktgfsrtnavldddlmlaepaksscc
Flexible Loop (DISEMBL)
MVTLLYLYiqisdptvgVDFFARLVTMRDGARiklqlwdtagqERFRSItksyyrnsVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGfsrtnavldddlmlaepaksscc
Low Complexity Region (SEG)
MVTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC
Disordered region (IsUnstruct)
*VTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV***************NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDD*************
Disordered Region (DISOPRED)
MVTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN**************************************SSCC
Disordered Region (DISEMBL)
MVTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC
Disordered Region (DISPRO)
*VTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q17QU4	213	Ras-related protein Rab-3	yes	N/A	0.834	0.755	0.536	7e-48
Q8BHC1	213	Ras-related protein Rab-3	yes	N/A	0.937	0.849	0.486	2e-47
Q96DA2	213	Ras-related protein Rab-3	yes	N/A	0.834	0.755	0.530	2e-47
Q8BHD0	217	Ras-related protein Rab-3	no	N/A	0.839	0.746	0.533	1e-46
Q14964	217	Ras-related protein Rab-3	no	N/A	0.808	0.718	0.540	4e-46
P36863	213	GTP-binding protein yptV4	N/A	N/A	0.901	0.816	0.428	2e-37
Q39570	213	GTP-binding protein YPTC4	N/A	N/A	0.901	0.816	0.423	7e-37
Q90965	212	Ras-related protein Rab-2	no	N/A	0.844	0.768	0.458	6e-36
Q38922	211	Ras-related protein RABB1	yes	N/A	0.911	0.834	0.434	9e-36
P53994	212	Ras-related protein Rab-2	no	N/A	0.834	0.759	0.458	2e-35

>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1

 Score =  189 bits (481), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 122/164 (74%), Gaps = 3/164 (1%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct: 33  FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct: 93  NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGF 171
            ETS+R    VE AFT +T++IY  V+ GD  +++GWEG+K+GF
Sbjct: 150 IETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGF 193

May be involved in vesicular trafficking (By similarity). Plays a role in synapse formation.
Bos taurus (taxid: 9913)

>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 129/185 (69%), Gaps = 4/185 (2%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct: 33  FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct: 93  NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+R    VE AFT +T++IY  V+ G+  +++GWEG+K+GF   N V   + ++   
Sbjct: 150 IETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFV-PNVVHSSEEVIKSE 208

Query: 188 AKSSC 192
            +  C
Sbjct: 209 RRCLC 213

May be involved in vesicular trafficking. Plays a role in synapse formation.

Mus musculus (taxid: 10090)

>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1

 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 122/164 (74%), Gaps = 3/164 (1%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct: 33  FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct: 93  NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGF 171
            ETS+R    VE AFT +T++IY  V+ G+  +++GWEG+K+GF
Sbjct: 150 IETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGF 193

May be involved in vesicular trafficking. Plays a role in synapse formation.

Homo sapiens (taxid: 9606)

>sp|Q8BHD0|RB39A_MOUSE Ras-related protein Rab-39A OS=Mus musculus GN=Rab39a PE=2 SV=1

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 119/165 (72%), Gaps = 3/165 (1%)

Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           L+    DPTVGVDFF+RL+ +  G RIKLQLWDTAGQERFRSIT+SYYRNSVG  LV+DI
Sbjct: 36  LHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDI 95

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T+R SFEH+  W+ EAK H++P + VF LVG K DL      R+VS  EA+  ++   + 
Sbjct: 96  TNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQ---RQVSREEAERLSTDCGMK 152

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGF 171
           + ETS++    VE +FT +T++IY  ++ G+  ++DGWEG+K+GF
Sbjct: 153 YIETSAKDATNVEESFTILTRDIYELIKKGEICIQDGWEGVKSGF 197

May be involved in vesicular trafficking.

Mus musculus (taxid: 10090)

>sp|Q14964|RB39A_HUMAN Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39A PE=2 SV=2

 Score =  184 bits (466), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 117/159 (73%), Gaps = 3/159 (1%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPTVGVDFF+RL+ +  G RIKLQLWDTAGQERFRSIT+SYYRNSVG  LV+DIT+R SF
Sbjct: 42  DPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSF 101

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           EH+  W+ EAK +++P R VF LVG K DL      R+V+  EA+  ++   + + ETS+
Sbjct: 102 EHVKDWLEEAKMYVQPFRIVFLLVGHKCDLASQ---RQVTREEAEKLSADCGMKYIETSA 158

Query: 133 RSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGF 171
           +    VE +FT +T++IY  ++ G+  ++DGWEG+K+GF
Sbjct: 159 KDATNVEESFTILTRDIYELIKKGEICIQDGWEGVKSGF 197

May be involved in vesicular trafficking.

Homo sapiens (taxid: 9606)

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 15/189 (7%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++ + DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 34  VHDLTIGVEFGARMINI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H  P+  +  L+G K DL      R V+  E + FA ++ ++  ET
Sbjct: 93  TFNHLASWLEDARQHANPNMTIM-LIGNKCDLTHR---RAVTTEEGEQFAKEHGLIFLET 148

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAK- 189
           S+R+   VE AF    +EIY ++Q G + V +   GIK G+   NA        A+P + 
Sbjct: 149 SARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNA----GPQAAKPGEG 204

Query: 190 -----SSCC 193
                SSCC
Sbjct: 205 DARKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1

 Score =  153 bits (386), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 15/189 (7%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++ + DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 34  VHDLTIGVEFGARMINI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H  P+  +  L+G K DL      R V+  E + FA ++ ++  ET
Sbjct: 93  TFNHLASWLEDARQHANPNMTIM-LIGNKCDLTHR---RAVTTEEGEQFAKEHGLIFLET 148

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAK- 189
           S+R+   VE AF    +EIY ++Q G + V +   GIK G+   NA         +P + 
Sbjct: 149 SARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNA----GPQTVKPGEG 204

Query: 190 -----SSCC 193
                SSCC
Sbjct: 205 GAAKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q90965|RAB2A_CHICK Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 7/170 (4%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++T+ DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 34  VHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD 92

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H   +  V  L+G K DL      REV + E +AFA ++ ++  ET
Sbjct: 93  TFNHLTTWLEDARQHSNSN-MVIMLIGNKSDLESR---REVKKEEGEAFAREHGLIFMET 148

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG--FSRTNAVL 178
           S+++   VE AF    +EIY ++Q G + + +   GIK G   + TNA L
Sbjct: 149 SAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATL 198

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Gallus gallus (taxid: 9031)

>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1

 Score =  149 bits (377), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 8/184 (4%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR+VT+ DG  IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 34  VHDLTIGVEFGARMVTV-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H  P+  +  L+G K DL      R VS+ E + FA ++ +L  E 
Sbjct: 93  TFNHLASWLEDARQHANPNMSIM-LIGNKCDLAH---KRAVSKEEGQQFAKEHGLLFLEA 148

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRT-NAVLDDDLMLAEPAK 189
           S+R+   VE AF     +I   +Q G + V +   GIK G+ RT  A    D  +++   
Sbjct: 149 SARTAQNVEEAFIETAAKILQNIQDGVFDVSNESSGIKIGYGRTQGAAGGRDGTISQGG- 207

Query: 190 SSCC 193
             CC
Sbjct: 208 -GCC 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 111/168 (66%), Gaps = 7/168 (4%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++T+ DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 34  VHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD 92

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H   +  V  L+G K DL      REV + E +AFA ++ ++  ET
Sbjct: 93  TFNHLTTWLEDARQHSNSN-MVIMLIGNKSDLESR---REVKKEEGEAFAREHGLIFMET 148

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG--FSRTNA 176
           S+++   VE AF    +EIY ++Q G + + +   GIK G   + TNA
Sbjct: 149 SAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNA 196

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
91093509	218	PREDICTED: similar to ras-related protei	0.958	0.848	0.752	2e-80
340709811	218	PREDICTED: ras-related protein Rab-39B-l	0.958	0.848	0.731	2e-78
307184090	218	Ras-related protein Rab-39B [Camponotus	0.958	0.848	0.720	5e-78
322785382	218	hypothetical protein SINV_03176 [Solenop	0.958	0.848	0.725	7e-78
380027163	218	PREDICTED: LOW QUALITY PROTEIN: ras-rela	0.958	0.848	0.720	1e-77
307192501	218	Ras-related protein Rab-39B [Harpegnatho	0.958	0.848	0.720	1e-77
383861916	218	PREDICTED: ras-related protein Rab-39B-l	0.958	0.848	0.720	1e-77
66500451	218	PREDICTED: ras-related protein Rab-39A [	0.958	0.848	0.720	2e-77
156554894	218	PREDICTED: ras-related protein Rab-39B-l	0.958	0.848	0.720	1e-76
194763507	218	GF21025 [Drosophila ananassae] gi|190618	0.958	0.848	0.709	2e-75

>gi|91093509|ref|XP_969295.1| PREDICTED: similar to ras-related protein Rab-39B, putative [Tribolium castaneum] gi|270002676|gb|EEZ99123.1| hypothetical protein TcasGA2_TC005229 [Tribolium castaneum]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/186 (75%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIPVWM EA+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EAKAFA QN I +
Sbjct: 94  NRASFEHIPVWMSEARRHIEPHRPVFALVGCKLDLVNNGGQREVSKEEAKAFADQNGIFN 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF +VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R N  LD +L+ AEP
Sbjct: 154 VETSAKNGMNVEEAFRSVTQEVYNRIQTGEYKVEDGWDGIKTGFARPNG-LDFNLIEAEP 212

Query: 188 AKSSCC 193
           AKSSCC
Sbjct: 213 AKSSCC 218

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709811|ref|XP_003393494.1| PREDICTED: ras-related protein Rab-39B-like [Bombus terrestris] gi|350410358|ref|XP_003489019.1| PREDICTED: ras-related protein Rab-39B-like [Bombus impatiens]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMMEA+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA Q+ + H
Sbjct: 94  NRASFEHIPQWMMEARRHIEPHRPVFALVGCKLDLVTNGSRREVSKEEARAFADQHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGVNVEEAFRTVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AKSSCC
Sbjct: 213 AKSSCC 218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184090|gb|EFN70625.1| Ras-related protein Rab-39B [Camponotus floridanus]

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALL+YD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLIYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMMEA+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA ++ + H
Sbjct: 94  NRASFEHIPQWMMEARRHIEPHRPVFALVGCKLDLVTNGGRREVSKEEARAFADEHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF AVTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGINVEEAFRAVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AK+SCC
Sbjct: 213 AKTSCC 218

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785382|gb|EFZ12055.1| hypothetical protein SINV_03176 [Solenopsis invicta] gi|332019048|gb|EGI59580.1| Ras-related protein Rab-39B [Acromyrmex echinatior]

 Score =  295 bits (754), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMMEA+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA ++ + H
Sbjct: 94  NRASFEHIPQWMMEARRHIEPHRPVFALVGCKLDLVTNGGRREVSKEEARAFADEHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGVNVEEAFRTVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AKSSCC
Sbjct: 213 AKSSCC 218

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027163|ref|XP_003697300.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-39B-like [Apis florea]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMM+A+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA ++ + H
Sbjct: 94  NRASFEHIPQWMMDARRHIEPHRPVFALVGCKLDLVTNGSRREVSKEEARAFADEHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGINVEEAFRTVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AKSSCC
Sbjct: 213 AKSSCC 218

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192501|gb|EFN75689.1| Ras-related protein Rab-39B [Harpegnathos saltator]

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMMEA+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA ++ + H
Sbjct: 94  NRASFEHIPQWMMEARRHIEPHRPVFALVGCKLDLVTNGGRREVSKEEARAFADEHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGVNVEEAFRTVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AK+SCC
Sbjct: 213 AKTSCC 218

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861916|ref|XP_003706430.1| PREDICTED: ras-related protein Rab-39B-like [Megachile rotundata]

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 161/186 (86%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMMEA+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA Q+ + H
Sbjct: 94  NRASFEHIPQWMMEARRHIEPHRPVFALVGCKLDLVTNGGRREVSKEEARAFADQHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE  F  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGINVEETFRTVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AK+SCC
Sbjct: 213 AKTSCC 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500451|ref|XP_623117.1| PREDICTED: ras-related protein Rab-39A [Apis mellifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +RASFEHIP WMM+A+RHIEPHRPVFALVGCKLDL+ +G  REVS+ EA+AFA ++ + H
Sbjct: 94  NRASFEHIPQWMMDARRHIEPHRPVFALVGCKLDLVTNGSRREVSKEEARAFADEHGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 IETSAKTGVNVEEAFRTVTQEVYNRIQTGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AKSSCC
Sbjct: 213 AKSSCC 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554894|ref|XP_001600275.1| PREDICTED: ras-related protein Rab-39B-like [Nasonia vitripennis]

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 158/186 (84%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ ++DG RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD+ 
Sbjct: 34  FAELSDPTVGVDFFARLIEVKDGTRIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDVC 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SFEHIP WMMEA+RHIEPHRPVF LVGCKLDL+ +G  REVS  EA+AFA Q  + H
Sbjct: 94  NRTSFEHIPRWMMEARRHIEPHRPVFCLVGCKLDLVTNGGRREVSREEARAFADQYGVHH 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+++G  VE AF  VTQE+YNR+Q+G+YKVEDGW+GIKTGF+R    LD +L+ AEP
Sbjct: 154 VETSAKTGLNVEEAFRTVTQEVYNRIQNGEYKVEDGWDGIKTGFARPGG-LDFNLVEAEP 212

Query: 188 AKSSCC 193
           AKSSCC
Sbjct: 213 AKSSCC 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763507|ref|XP_001963874.1| GF21025 [Drosophila ananassae] gi|190618799|gb|EDV34323.1| GF21025 [Drosophila ananassae]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/186 (70%), Positives = 159/186 (85%), Gaps = 1/186 (0%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFFARL+ M+DG +IKLQLWDTAGQERFRSITKSYYRNSVG LLVYDI+
Sbjct: 34  FAELSDPTVGVDFFARLIEMKDGTQIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDIS 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           + ASFEHIP+WMMEA+RHIEPHRPVFALVGCKLDL+ +G  REV+  EA AFA Q+ +  
Sbjct: 94  NHASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHREVTTEEASAFAKQHGLHF 153

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+RSG  VE AF  VTQE+Y R++SG+YK EDGW+GIK+GF+R N+ LD +L++AEP
Sbjct: 154 VETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGFARPNS-LDFNLVVAEP 212

Query: 188 AKSSCC 193
            KSSCC
Sbjct: 213 EKSSCC 218

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
FB|FBgn0029959	218	Rab39 "Rab39" [Drosophila mela	0.953	0.844	0.716	1.8e-69
ZFIN|ZDB-GENE-070620-7	213	zgc:165464 "zgc:165464" [Danio	0.834	0.755	0.548	3e-46
ZFIN|ZDB-GENE-061215-104	213	rab39b "RAB39B, member RAS onc	0.834	0.755	0.536	1.6e-45
UNIPROTKB|Q17QU4	213	RAB39B "Ras-related protein Ra	0.937	0.849	0.491	4.4e-45
UNIPROTKB|F1PDF8	210	RAB39B "Uncharacterized protei	0.937	0.861	0.491	4.4e-45
UNIPROTKB|J9NTY1	231	RAB39B "Uncharacterized protei	0.937	0.783	0.491	4.4e-45
UNIPROTKB|F2Z552	213	LOC100516775 "Uncharacterized	0.937	0.849	0.491	4.4e-45
MGI|MGI:1915040	213	Rab39b "RAB39B, member RAS onc	0.937	0.849	0.486	9.1e-45
UNIPROTKB|Q96DA2	213	RAB39B "Ras-related protein Ra	0.937	0.849	0.486	1.2e-44
MGI|MGI:2442855	217	Rab39 "RAB39, member RAS oncog	0.943	0.838	0.497	1.5e-44

FB|FBgn0029959 Rab39 "Rab39" [Drosophila melanogaster (taxid:7227)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 134/187 (71%), Positives = 160/187 (85%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + ++SDPTVGVDFFARL+ M+DG +IKLQLWDTAGQERFRSITKSYYRNSVG LLVYDI+
Sbjct:    34 FAELSDPTVGVDFFARLIEMKDGTQIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDIS 93

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             + ASFEHIP+WMMEA+RHIEPHR VFALVGCKLDL+ +G  REV+  EA+ FA Q+  LH
Sbjct:    94 NHASFEHIPLWMMEAQRHIEPHRSVFALVGCKLDLINAGGHREVTTEEAQKFAKQHG-LH 152

Query:   128 F-ETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAE 186
             F ETS+RSG  VE AF  VTQE+Y R++SG+YK EDGW+GIK+GFSR N+ LD +L++AE
Sbjct:   153 FVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGFSRPNS-LDFNLVVAE 211

Query:   187 PAKSSCC 193
             P KSSCC
Sbjct:   212 PEKSSCC 218

GO:0005525 "GTP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

ZFIN|ZDB-GENE-070620-7 zgc:165464 "zgc:165464" [Danio rerio (taxid:7955)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 90/164 (54%), Positives = 124/164 (75%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    33 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ EA+ H++PH  VF LVG K DL Q    R+VS+ EA+  A+   + +
Sbjct:    93 NRRSFQNVHEWLEEARSHVQPHSIVFILVGHKCDLEQQ---RQVSQQEAEKLAAAYGMRY 149

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGF 171
              ETS+R    VE AFT +T++I+  V+ GD  +++GWEG+K+GF
Sbjct:   150 VETSARDAINVEKAFTELTRDIFELVKCGDITIQEGWEGVKSGF 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-061215-104 rab39b "RAB39B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/164 (53%), Positives = 124/164 (75%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    33 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ EA+ H++PH  VF LVG K DL      R+VS+ EA+  A+   + +
Sbjct:    93 NRRSFQNVHEWLEEARSHVQPHSIVFLLVGHKCDLEPQ---RQVSQQEAEKLAAAYGMRY 149

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGF 171
              ETS+R    VE AFT +T++I+  V++G+  +++GWEG+K+GF
Sbjct:   150 VETSARDAINVERAFTELTRDIFELVKNGEISIQEGWEGVKSGF 193

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q17QU4 RAB39B "Ras-related protein Rab-39B" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 91/185 (49%), Positives = 129/185 (69%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    33 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct:    93 NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
              ETS+R    VE AFT +T++IY  V+ GD  +++GWEG+K+GF   N V   + ++   
Sbjct:   150 IETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFV-PNVVHSSEEVVKSE 208

Query:   188 AKSSC 192
              +  C
Sbjct:   209 RRCLC 213

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0050808 "synapse organization" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1PDF8 RAB39B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 91/185 (49%), Positives = 129/185 (69%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    30 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 89

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct:    90 NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 146

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
              ETS+R    VE AFT +T++IY  V+ GD  +++GWEG+K+GF   N V   + ++   
Sbjct:   147 IETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFV-PNVVHSSEEVVKSE 205

Query:   188 AKSSC 192
              +  C
Sbjct:   206 RRCLC 210

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9NTY1 RAB39B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 91/185 (49%), Positives = 129/185 (69%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    51 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 110

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct:   111 NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 167

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
              ETS+R    VE AFT +T++IY  V+ GD  +++GWEG+K+GF   N V   + ++   
Sbjct:   168 IETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFV-PNVVHSSEEVVKSE 226

Query:   188 AKSSC 192
              +  C
Sbjct:   227 RRCLC 231

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z552 LOC100516775 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 91/185 (49%), Positives = 129/185 (69%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    33 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct:    93 NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
              ETS+R    VE AFT +T++IY  V+ GD  +++GWEG+K+GF   N V   + ++   
Sbjct:   150 IETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFV-PNVVHSSEEVVKSE 208

Query:   188 AKSSC 192
              +  C
Sbjct:   209 RRCLC 213

GO:0050808 "synapse organization" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1915040 Rab39b "RAB39B, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 90/185 (48%), Positives = 129/185 (69%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    33 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct:    93 NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
              ETS+R    VE AFT +T++IY  V+ G+  +++GWEG+K+GF   N V   + ++   
Sbjct:   150 IETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFV-PNVVHSSEEVIKSE 208

Query:   188 AKSSC 192
              +  C
Sbjct:   209 RRCLC 213

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0050808 "synapse organization" evidence=IMP

UNIPROTKB|Q96DA2 RAB39B "Ras-related protein Rab-39B" [Homo sapiens (taxid:9606)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 90/185 (48%), Positives = 129/185 (69%)

Query:     8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
             + Q+SDPTVGVDFF+RLV +  G RIKLQ+WDTAGQERFRSIT++YYRNSVG LL++DIT
Sbjct:    33 FAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDIT 92

Query:    68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +R SF+++  W+ E K H++P++ VF LVG K DL      R+V+  EA+  A+   + +
Sbjct:    93 NRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL---DTQRQVTRHEAEKLAAAYGMKY 149

Query:   128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
              ETS+R    VE AFT +T++IY  V+ G+  +++GWEG+K+GF   N V   + ++   
Sbjct:   150 IETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFV-PNVVHSSEEVVKSE 208

Query:   188 AKSSC 192
              +  C
Sbjct:   209 RRCLC 213

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0050808 "synapse organization" evidence=ISS

GO:0005622 "intracellular" evidence=IDA

MGI|MGI:2442855 Rab39 "RAB39, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 93/187 (49%), Positives = 127/187 (67%)

Query:     7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
             L+    DPTVGVDFF+RL+ +  G RIKLQLWDTAGQERFRSIT+SYYRNSVG  LV+DI
Sbjct:    36 LHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDI 95

Query:    67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
             T+R SFEH+  W+ EAK H++P + VF LVG K DL      R+VS  EA+  ++   + 
Sbjct:    96 TNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQ---RQVSREEAERLSTDCGMK 152

Query:   127 HFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAE 186
             + ETS++    VE +FT +T++IY  ++ G+  ++DGWEG+K+GF   N V   +  + +
Sbjct:   153 YIETSAKDATNVEESFTILTRDIYELIKKGEICIQDGWEGVKSGFV-PNTVHSSEEAV-K 210

Query:   187 PAKSSCC 193
             P K   C
Sbjct:   211 PRKECFC 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0090383 "phagosome acidification" evidence=ISO

GO:0090385 "phagosome-lysosome fusion" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17QU4	RB39B_BOVIN	No assigned EC number	0.5365	0.8341	0.7558	yes	N/A
Q96DA2	RB39B_HUMAN	No assigned EC number	0.5304	0.8341	0.7558	yes	N/A
Q38922	RAB1B_ARATH	No assigned EC number	0.4347	0.9119	0.8341	yes	N/A
Q8BHC1	RB39B_MOUSE	No assigned EC number	0.4864	0.9378	0.8497	yes	N/A
P17610	YPT3_SCHPO	No assigned EC number	0.4043	0.9067	0.8177	yes	N/A
P36409	RAB2A_DICDI	No assigned EC number	0.4153	0.9015	0.8405	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-91
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-63
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-59
pfam00071	162	pfam00071, Ras, Ras family	4e-55
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-50
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-49
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-48
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-44
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-44
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-43
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-43
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-42
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-41
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-41
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	8e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-35
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-33
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-33
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	5e-33
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-33
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-32
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-32
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	9e-31
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	7e-29
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-28
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-27
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-27
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	8e-26
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-25
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-25
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-25
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-25
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-24
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-24
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-23
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-21
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-20
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-19
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-19
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-19
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-19
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-18
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-18
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-18
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	6e-18
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	9e-18
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-17
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-17
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-17
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-15
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-15
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-15
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-14
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-14
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	6e-14
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-14
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-13
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-13
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-13
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-13
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-13
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-12
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-12
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-12
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-11
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	6e-11
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-10
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-10
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-10
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-09
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-09
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	7e-09
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-08
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-08
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-08
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	9e-08
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	9e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-06
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	5e-05
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-05
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	9e-05
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-04
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-04
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	4e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.001
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	0.002
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.002
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.002
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	0.003
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.003
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.003

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  264 bits (676), Expect = 6e-91
 Identities = 103/188 (54%), Positives = 131/188 (69%), Gaps = 5/188 (2%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++SDPTVGVDFF+RL+ +  G RIKLQLWDTAGQERFRSIT+SYYRNSVG LLV+DIT
Sbjct: 27  FAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDIT 86

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SFEH+  W+ EA+ HI+PHRPVF LVG K DL      R+V+  EA+  A    + +
Sbjct: 87  NRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ---RQVTREEAEKLAKDLGMKY 143

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVL--DDDLMLA 185
            ETS+R+G  VE AF  +TQEIY R++ G+    DGW+G+K+GF    A    +     A
Sbjct: 144 IETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFA 203

Query: 186 EPAKSSCC 193
            P KS CC
Sbjct: 204 SPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  191 bits (488), Expect = 8e-63
 Identities = 71/145 (48%), Positives = 98/145 (67%), Gaps = 5/145 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +    T+GVDF  + + + DG R+KLQ+WDTAGQERFRSIT SYYR +VGALLVYDIT
Sbjct: 25  FSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDIT 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SFE++  W+ E + +  P+  V  LVG K DL +    R+VS  EA+AFA ++ +  
Sbjct: 84  NRESFENLENWLKELREYASPN-VVIMLVGNKSDLEEQ---RQVSREEAEAFAEEHGLPF 139

Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
           FETS+++   VE AF  + +EI  R
Sbjct: 140 FETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  183 bits (467), Expect = 1e-59
 Identities = 66/140 (47%), Positives = 97/140 (69%), Gaps = 5/140 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +    T+GVDF ++ + + DG ++KLQ+WDTAGQERFRSIT SYYR + GA+LVYD+T
Sbjct: 25  FSENYKSTIGVDFKSKTIEV-DGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVT 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +R SFE++  W+ E K +  P+ P+  LVG K DL      R+VS  EA+ FA +N +L 
Sbjct: 84  NRESFENLDKWLNELKEYAPPNIPII-LVGNKSDLEDE---RQVSTEEAQQFAKENGLLF 139

Query: 128 FETSSRSGFQVENAFTAVTQ 147
           FETS+++G  V+ AF ++ +
Sbjct: 140 FETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  171 bits (437), Expect = 4e-55
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 10/154 (6%)

Query: 3   TLLYLYIQ-----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
           +LL  + Q        PT+GVDF+ + +   DG  +KLQ+WDTAGQERFR++   YYR +
Sbjct: 14  SLLIRFTQNKFPEEYIPTIGVDFYTKTI-EVDGKTVKLQIWDTAGQERFRALRPLYYRGA 72

Query: 58  VGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK 117
            G LLVYDITSR SFE++  W+ E  RH         LVG K DL      R VS  E +
Sbjct: 73  QGFLLVYDITSRDSFENVKKWLEEILRH-ADENVPIVLVGNKCDLEDQ---RVVSTEEGE 128

Query: 118 AFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
           A A +  +   ETS+++   VE AF  + +EI  
Sbjct: 129 ALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  160 bits (408), Expect = 1e-50
 Identities = 67/139 (48%), Positives = 89/139 (64%), Gaps = 5/139 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAGQER+R+IT +YYR +VGALLVYDIT +++
Sbjct: 32  SKSTIGVEFATRTIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKST 90

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           FE++  W+ E + H + +  V  LVG K DL      R V   EAKAFA +N +   ETS
Sbjct: 91  FENVERWLKELRDHADSN-IVIMLVGNKSDLRHL---RAVPTEEAKAFAEKNGLSFIETS 146

Query: 132 SRSGFQVENAFTAVTQEIY 150
           +  G  VE AF  +  EIY
Sbjct: 147 ALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  156 bits (395), Expect = 7e-49
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 5/142 (3%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++T+ DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 32  VHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 90

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H   +     L+G K DL      REVS  E +AFA ++ ++  ET
Sbjct: 91  TFNHLTSWLEDARQHSNSNM-TIMLIGNKCDLESR---REVSYEEGEAFAREHGLIFMET 146

Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
           S+++   VE AF    +EIY++
Sbjct: 147 SAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  156 bits (395), Expect = 3e-48
 Identities = 70/164 (42%), Positives = 102/164 (62%), Gaps = 5/164 (3%)

Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++T+ D   IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 34  VHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H   +  +  L+G K DL      R VS  E + FA ++ ++  E 
Sbjct: 93  TFNHLASWLEDARQHANANMTIM-LIGNKCDLAHR---RAVSTEEGEQFAKEHGLIFMEA 148

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRT 174
           S+++   VE AF     +IY ++Q G + V +   GIK G+   
Sbjct: 149 SAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYGAI 192

Length = 210

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  143 bits (363), Expect = 4e-44
 Identities = 72/151 (47%), Positives = 95/151 (62%), Gaps = 10/151 (6%)

Query: 4   LLYLYI-----QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           LL+ +I     Q S+ T+GV+F +R+V +  G  +KLQ+WDTAGQERFRS+T+SYYR + 
Sbjct: 16  LLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKSVKLQIWDTAGQERFRSVTRSYYRGAA 74

Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           GALLVYDITSR SF  +  W+ +A+    P   V  LVG K DL      REV+  EA  
Sbjct: 75  GALLVYDITSRESFNALTNWLTDARTLASPDI-VIILVGNKKDL---EDDREVTFLEASR 130

Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEI 149
           FA +N +L  ETS+ +G  VE AF    + I
Sbjct: 131 FAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  143 bits (363), Expect = 6e-44
 Identities = 62/136 (45%), Positives = 95/136 (69%), Gaps = 5/136 (3%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  R++ + +G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT R+++ H
Sbjct: 34  TIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 92

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ +A+    P+  +F L+G K DL      R+V+  EAK FA +N +L  E S+++
Sbjct: 93  LSSWLTDARNLTNPNTVIF-LIGNKADLEAQ---RDVTYEEAKQFADENGLLFLECSAKT 148

Query: 135 GFQVENAFTAVTQEIY 150
           G  VE+AF    ++IY
Sbjct: 149 GENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  141 bits (357), Expect = 5e-43
 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G+DF  R + + DG +IKLQ+WDTAGQERFR+IT SYYR ++G +LVYDIT   SFE
Sbjct: 34  STIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFE 92

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           +I  WM     H         LVG K D+ +    R VS+ E +A A +  I   ETS++
Sbjct: 93  NIKNWMRNIDEHASEDVERM-LVGNKCDMEEK---RVVSKEEGEALAREYGIKFLETSAK 148

Query: 134 SGFQVENAFTAVTQEIYNR 152
           +   VE AF  + ++I  +
Sbjct: 149 ANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  140 bits (355), Expect = 8e-43
 Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 5/137 (3%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G  F  + V + D   +K ++WDTAGQER+RS+   YYR +  A++VYDITS  SFE
Sbjct: 32  STIGAAFLTQTVNLDDTT-VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFE 90

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
               W+ E + H  P+  V AL G K DL      R+VS  EA+ +A +N +L  ETS++
Sbjct: 91  KAKSWVKELQEHGPPNI-VIALAGNKADLESK---RQVSTEEAQEYADENGLLFMETSAK 146

Query: 134 SGFQVENAFTAVTQEIY 150
           +G  V   FT + +++ 
Sbjct: 147 TGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  139 bits (352), Expect = 3e-42
 Identities = 60/140 (42%), Positives = 84/140 (60%), Gaps = 9/140 (6%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R + + DG  +KLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 34  TIGVDFKIRTIEL-DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN 92

Query: 75  IPVWMMEAKRHIEP--HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           +  W+ E  R+     ++    LVG K DL      + V   EAK FA +  I   ETS+
Sbjct: 93  VKQWLQEIDRYASENVNK---LLVGNKCDLTDK---KVVDYTEAKEFADELGIPFLETSA 146

Query: 133 RSGFQVENAFTAVTQEIYNR 152
           ++   VE AF  + +EI  R
Sbjct: 147 KNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  137 bits (348), Expect = 1e-41
 Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 5/137 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
             T+G+DF ++ + + D   ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+R SF
Sbjct: 30  QATIGIDFLSKTMYV-DDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSF 88

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           ++   W+ +  R    +  +  LVG K DL      R+VS  E +  A +N+ +  ETS+
Sbjct: 89  DNTDKWIDDV-RDERGNDVIIVLVGNKTDLSDK---RQVSTEEGEKKAKENNAMFIETSA 144

Query: 133 RSGFQVENAFTAVTQEI 149
           ++G  V+  F  + Q +
Sbjct: 145 KAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  135 bits (343), Expect = 6e-41
 Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 5/137 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
             T+GVDF  + VT+ DG ++KL +WDTAGQERFR++T SYYR + G +LVYD+T R +F
Sbjct: 30  SSTIGVDFKVKTVTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTF 88

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           +++  W+ E   +      V  LVG K+D       REV+  E + FA ++++L  ETS+
Sbjct: 89  DNLDTWLNELDTYSTNPDAVKMLVGNKIDK----ENREVTREEGQKFARKHNMLFIETSA 144

Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V+ AF  + ++I
Sbjct: 145 KTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  127 bits (322), Expect = 8e-38
 Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 6/136 (4%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + + +  G R+KLQ+WDTAGQERFR+IT+SYYR++ GA++ YDIT R+SFE 
Sbjct: 35  TIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFES 93

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH-FETSSR 133
           +P W+ E +++   +  V  L+G K DL +    REV   EA   A    IL   ETS++
Sbjct: 94  VPHWIEEVEKYGASN-VVLLLIGNKCDLEEQ---REVLFEEACTLAEHYGILAVLETSAK 149

Query: 134 SGFQVENAFTAVTQEI 149
               VE AF  +  E+
Sbjct: 150 ESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  120 bits (303), Expect = 7e-35
 Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 5/123 (4%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
           ++ T+GVDF  R V + DG RIK+QLWDTAGQERFR S+ + YYRN    + VYD+T+ A
Sbjct: 31  TEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMA 89

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SF  +P W+ E ++H  P+     LVG K DL +     +V    A+ FA  + +  FET
Sbjct: 90  SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ---IQVPTDLAQRFADAHSMPLFET 146

Query: 131 SSR 133
           S++
Sbjct: 147 SAK 149

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  116 bits (293), Expect = 2e-33
 Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 12/148 (8%)

Query: 15  TVGVDFF-ARLV--------TMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
           TVG+DF   R+V        T     R+ LQLWDTAGQERFRS+T +++R+++G LL++D
Sbjct: 36  TVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 95

Query: 66  ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
           +TS  SF ++  WM + + H     P   L+G K DL      REVSE +A+  A +  I
Sbjct: 96  LTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNKADLPDQ---REVSERQARELADKYGI 152

Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRV 153
            +FETS+ +G  VE A   +   I  R+
Sbjct: 153 PYFETSAATGQNVEKAVETLLDLIMKRM 180

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  116 bits (293), Expect = 2e-33
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 8/137 (5%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G DF  + VT+ D   + LQ+WDTAGQERF+S+  ++YR +   +LVYD+T+  SFE 
Sbjct: 32  TIGADFLTKEVTV-DDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFES 90

Query: 75  IPVWMMEAKRHIEPHRPV---FALVGCKLDLLQSGVPREVSEAEAKAF-ASQNDILHFET 130
           +  W  E      P  P    F ++G K+DL +    R+VS  +A+ +  S+ +I +FET
Sbjct: 91  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEEK---RQVSTKKAQQWCKSKGNIPYFET 147

Query: 131 SSRSGFQVENAFTAVTQ 147
           S++    V+ AF  + +
Sbjct: 148 SAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  115 bits (290), Expect = 5e-33
 Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 5/135 (3%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + V +  G +IKLQ+WDTAGQERFRSIT+SYYR++   +L YDIT   SF  
Sbjct: 39  TIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 97

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W+ E +++   ++ +  LVG K+DL      REVS+  A+ F+   D+ + ETS++ 
Sbjct: 98  LPEWLREIEQYAN-NKVITILVGNKIDL---AERREVSQQRAEEFSDAQDMYYLETSAKE 153

Query: 135 GFQVENAFTAVTQEI 149
              VE  F  +   +
Sbjct: 154 SDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  117 bits (294), Expect = 5e-33
 Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 5/140 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + +G  +K Q+WDTAGQER+R+IT +YYR +VGALLVYDIT R +
Sbjct: 41  SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT 99

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F+++  W+ E + H + +  V  + G K DL      R V+E + +A A +  +   ETS
Sbjct: 100 FDNVQRWLRELRDHADSN-IVIMMAGNKSDLNHL---RSVAEEDGQALAEKEGLSFLETS 155

Query: 132 SRSGFQVENAFTAVTQEIYN 151
           +     VE AF  +  EIY+
Sbjct: 156 ALEATNVEKAFQTILLEIYH 175

Length = 216

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  115 bits (289), Expect = 1e-32
 Identities = 59/144 (40%), Positives = 91/144 (63%), Gaps = 6/144 (4%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           TVG+ F  ++VT+ DG ++KLQ+WDTAGQERFRS+T +YYR++   LL+YD+T+++SF++
Sbjct: 33  TVGIQFTNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDN 91

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W+ E          V  L+G K D+      R V   + +  A +  +   ETS+++
Sbjct: 92  IRAWLTEI-LEYAQSDVVIMLLGNKADM---SGERVVKREDGERLAKEYGVPFMETSAKT 147

Query: 135 GFQVENAFTAVTQEIYNR-VQSGD 157
           G  VE AFTAV +E+ +R V+  D
Sbjct: 148 GLNVELAFTAVAKELKHRSVEQPD 171

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  113 bits (285), Expect = 3e-32
 Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 12/125 (9%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKR---- 84
            G RI L +WDTAGQER+ ++   YYR++ GA+LVYDIT   SF+ +  W+ E K+    
Sbjct: 45  GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN 104

Query: 85  HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTA 144
           +I        +VG K+DL +    R VS++EA+ +A      HFETS+++G  +E  F +
Sbjct: 105 NISL-----VIVGNKIDLERQ---RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLS 156

Query: 145 VTQEI 149
           + + +
Sbjct: 157 LAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  110 bits (277), Expect = 9e-31
 Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R V + +G R+KLQ+WDTAGQERFR+IT +YYR + G ++VYD+T+  SF +
Sbjct: 38  TIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVN 96

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E +++ +    V  LVG K D  +  V   V   +A  FA Q  I  FETS++ 
Sbjct: 97  VKRWLQEIEQNCDDVCKV--LVGNKNDDPERKV---VETEDAYKFAGQMGISLFETSAKE 151

Query: 135 GFQVENAFTAVTQEIYNR 152
              VE  F  +T+ +   
Sbjct: 152 NINVEEMFNCITELVLRA 169

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  106 bits (265), Expect = 7e-29
 Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 6/140 (4%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           TVGVDF  + V +R G +I+LQ+WDTAGQERF SIT +YYR++ G +LVYDIT + +F+ 
Sbjct: 32  TVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 90

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHF-ETSSR 133
           +P WM    ++      +  LVG KLD       RE++  + + FA Q   + F E S++
Sbjct: 91  LPKWMKMIDKYASEDAELL-LVGNKLDCETD---REITRQQGEKFAQQITGMRFCEASAK 146

Query: 134 SGFQVENAFTAVTQEIYNRV 153
             F V+  F  +  +I  ++
Sbjct: 147 DNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  105 bits (263), Expect = 1e-28
 Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 5/137 (3%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+GVDF  + +T+  G R+KL +WDTAGQERFR++T SYYRN+ G +LVYD+T R +F 
Sbjct: 44  PTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFT 102

Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           ++  VW  E + +      V  LVG K+D  +S   R+VS  E  A A ++  L  E S+
Sbjct: 103 NLSDVWGKEVELYSTNQDCVKMLVGNKVD-RESE--RDVSREEGMALAKEHGCLFLECSA 159

Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE  F  +  +I
Sbjct: 160 KTRENVEQCFEELALKI 176

Length = 211

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  101 bits (254), Expect = 1e-27
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +++  DPT+  D + + + + DG    L + DTAGQE F ++   Y RN  G +LVY IT
Sbjct: 24  FVEEYDPTIE-DSYRKQIVV-DGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSIT 81

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           SR SFE I     +  R  +       LVG K DL      R+VS  E +A A +     
Sbjct: 82  SRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE---RQVSTEEGEALAEEWGCPF 138

Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS+++   ++  F  + +EI
Sbjct: 139 LETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  101 bits (253), Expect = 2e-27
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 8/133 (6%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G+D+  + V++R+   +++  +D +G   +  +   +Y+++ G LLVYD+T R SFE
Sbjct: 31  PTIGIDYGVKKVSVRN-KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFE 89

Query: 74  HIPVWMMEAKRHIEPHR----PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            +  W+ E K+   PH      V  +   K+DL      R VSE E + +A      +FE
Sbjct: 90  ALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT---KHRAVSEDEGRLWAESKGFKYFE 146

Query: 130 TSSRSGFQVENAF 142
           TS+ +G  V   F
Sbjct: 147 TSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 97.7 bits (243), Expect = 8e-26
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 6/136 (4%)

Query: 17  GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76
           G+D+    + + DG R+KLQLWDT+GQ RF +I +SY R + G +LVYDIT+R SF+ I 
Sbjct: 40  GIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGID 98

Query: 77  VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF 136
            W+ E   H  P  P   LVG +L L      R+V+  +A+A+A +N +  FE S    F
Sbjct: 99  RWIKEIDEH-APGVPKI-LVGNRLHL---AFKRQVATEQAQAYAERNGMTFFEVSPLCNF 153

Query: 137 QVENAFTAVTQEIYNR 152
            +  +FT + + +  R
Sbjct: 154 NITESFTELARIVLMR 169

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 21/186 (11%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  +++       ++LQLWD AGQERF  +T+ YY+ +VGA++V+D+T  ++FE
Sbjct: 31  ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFE 90

Query: 74  HIPVWM--MEAKRHIEPHRPVFA-LVGCKLDLLQ--SGVPREVSEAEAKAFASQNDIL-H 127
            +  W   +++K  +    P+ A L+  K DL +       E    +   F  +N  +  
Sbjct: 91  AVLKWKADLDSKVTLPNGEPIPALLLANKCDLKKERLAKDPE----QMDQFCKENGFIGW 146

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
           FETS++    +E A   + + I    +       D            + V+D        
Sbjct: 147 FETSAKENINIEEAMRFLVKNILKNDKGLQSPEPDE-----------DNVIDLKQETTTS 195

Query: 188 AKSSCC 193
              SCC
Sbjct: 196 KSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 96.4 bits (239), Expect = 2e-25
 Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 7/150 (4%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + +G  ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+R SFE+
Sbjct: 12  TIGIDFLSKTLYLDEGP-VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFEN 70

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ +          + ALVG K DL   G  R+V+  E    A + + +  ETS+++
Sbjct: 71  TTKWIQDILNE-RGKDVIIALVGNKTDL---GDLRKVTYEEGMQKAQEYNTMFHETSAKA 126

Query: 135 GFQVENAFTAVTQEIYN--RVQSGDYKVED 162
           G  ++  F  +  ++ N     S D  V D
Sbjct: 127 GHNIKVLFKKIAAKLPNLDNSNSNDANVVD 156

Length = 176

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 4/139 (2%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G  F A+ + + +   + L +WDTAG ER+ ++++ YYR +  A++ YD+T  +SFE 
Sbjct: 33  TIGAAFVAKRMVVGE-RVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFER 91

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP-REVSEAEAKAFASQNDILHFETSSR 133
              W+ E  +++E H  ++ L G K DL++     R+V   + + FA +    HFETSS+
Sbjct: 92  AKFWVKEL-QNLEEHCKIY-LCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149

Query: 134 SGFQVENAFTAVTQEIYNR 152
           +G  V+  F  V ++  +R
Sbjct: 150 TGQNVDELFQKVAEDFVSR 168

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 94.2 bits (234), Expect = 9e-25
 Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           TVG+DF  + V  R+  RIKLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT+  SF  
Sbjct: 33  TVGIDFKVKTV-YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 91

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W  + K +   +  V  LVG K D+      R VS    +  A Q     FE S++ 
Sbjct: 92  VQDWSTQIKTYSWDNAQVI-LVGNKCDMEDE---RVVSAERGRQLADQLGFEFFEASAKE 147

Query: 135 GFQVENAF 142
              V+  F
Sbjct: 148 NINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 93.1 bits (231), Expect = 3e-24
 Identities = 48/133 (36%), Positives = 80/133 (60%), Gaps = 5/133 (3%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + + + DG ++++Q+WDTAGQER+++ITK YYR + G  LVYDI+S  S++H
Sbjct: 32  TIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQH 90

Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W+ +   +  P      L+G K D       R+V + +    A +  +  FETS+ +
Sbjct: 91  IMKWVSDVDEY-APEGVQKILIGNKAD---EEQKRQVGDEQGNKLAKEYGMDFFETSACT 146

Query: 135 GFQVENAFTAVTQ 147
              ++ +FT +T+
Sbjct: 147 NKNIKESFTRLTE 159

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 92.1 bits (229), Expect = 6e-24
 Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 6/129 (4%)

Query: 15  TVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           T+GVDF  + + +R     ++L LWDTAGQE F +ITK+YYR +   +LV+  T R SFE
Sbjct: 32  TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFE 91

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            I  W  + +   E       LV  K+DLL   V   ++  EA+A A +  +  F TS +
Sbjct: 92  AIESWKEKVEA--ECGDIPMVLVQTKIDLLDQAV---ITNEEAEALAKRLQLPLFRTSVK 146

Query: 134 SGFQVENAF 142
             F V   F
Sbjct: 147 DDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 91.5 bits (227), Expect = 1e-23
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 9/139 (6%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  + + + DG  + LQ+WDTAGQERFRS+   +YR S   LL + +    SF++
Sbjct: 37  TIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 95

Query: 75  IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
           +  W  E   +    EP    F ++G K+D+ +    R+VS  EA+A+   N D  +FET
Sbjct: 96  LSNWKKEFIYYADVKEPESFPFVILGNKIDIPE----RQVSTEEAQAWCRDNGDYPYFET 151

Query: 131 SSRSGFQVENAFTAVTQEI 149
           S++    V  AF    + +
Sbjct: 152 SAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 85.7 bits (212), Expect = 2e-21
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 15  TVGVDF-FARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           T+GVDF   R   +  G    LQLWDTAGQERF+ I  +YYR +   ++V+D+T  AS E
Sbjct: 32  TIGVDFEMERFEVL--GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLE 89

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           H   W+ +A +  +P   +  LVG K DL  S     + E +A   A +    ++  S+ 
Sbjct: 90  HTRQWLEDALKENDPSSVLLFLVGTKKDLS-SPAQYALMEQDAIKLAREMKAEYWAVSAL 148

Query: 134 SGFQVENAFTAV 145
           +G  V + F  V
Sbjct: 149 TGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 83.5 bits (206), Expect = 5e-20
 Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS- 71
            PT+G    A+         IKLQLWDTAGQE +RS+   YYR + G L+VYD T R S 
Sbjct: 35  PPTIGNLDPAK-TIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESS 93

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDL-------------LQSGVPREVSEAEAKA 118
            E    W+ E +       P+  LVG K+DL             L   V   V   +A  
Sbjct: 94  DELTEEWLEELRELAPDDVPIL-LVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152

Query: 119 FASQNDILHFETSSRS--GFQVENAFTAVTQEIYNR 152
                +    ETS++S  G  V   F  + +++   
Sbjct: 153 PEV-ANPALLETSAKSLTGPNVNELFKELLRKLLEE 187

Length = 219

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 80.7 bits (200), Expect = 1e-19
 Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           ++   DPT+  D + + + + DG    L + DTAGQE F ++   Y R   G LLVY IT
Sbjct: 25  FVDDYDPTIE-DSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSIT 82

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R SFE I  +  +  R  +       LVG K DL      R VS  E K  A Q     
Sbjct: 83  DRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE---RVVSTEEGKELARQWGCPF 139

Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS++    V+ AF  + +EI
Sbjct: 140 LETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 79.9 bits (198), Expect = 3e-19
 Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           ++   DPT+  D + + + + DG    L + DTAGQE F ++   Y R   G LLVY IT
Sbjct: 27  FVDEYDPTIE-DSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSIT 84

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R SFE I  +  +  R  +       LVG K DL      R VS  E K  A Q     
Sbjct: 85  DRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENE---RVVSTEEGKELARQWGCPF 141

Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS++    V+ AF  + +EI
Sbjct: 142 LETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 4e-19
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +++  DPT+   +  ++V   DG    L++ DTAGQE + ++   + R   G +LVY IT
Sbjct: 24  FVETYDPTIEDSYRKQVVV--DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT 81

Query: 68  SRASFEHIPVWMMEAKR--HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
           SR++FE +  +  + +R            +VG K D +     REVS  E  A A +   
Sbjct: 82  SRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE---REVSTEEGAALARRLGC 138

Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQSG 156
              E S+++   VE AF  + + +  + Q G
Sbjct: 139 EFIEASAKTNVNVERAFYTLVRALRQQRQGG 169

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 80.6 bits (199), Expect = 5e-19
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DFF+R +T+     + LQ+WD  GQ+    +   Y   +    LVYDIT+  SFE+
Sbjct: 32  TIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFEN 91

Query: 75  IPVWMMEAKRHIEPH--RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           +  W+   K+  E    +P   LVG K DL  +   R+V+  +   FA +ND+     S+
Sbjct: 92  LEDWLSVVKKVNEESETKPKMVLVGNKTDLEHN---RQVTAEKHARFAQENDMESIFVSA 148

Query: 133 RSGFQVENAFTAVTQEIYN 151
           ++G +V   F  +  E+  
Sbjct: 149 KTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 3   TLLYLYIQIS---DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
           TL ++Y +     +PT   D + + V + DG  ++L + DTAGQE + +I  +Y+R+  G
Sbjct: 17  TLQFMYDEFVEDYEPTKA-DSYRKKVVL-DGEEVQLNILDTAGQEDYAAIRDNYFRSGEG 74

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            LLV+ IT   SF  +  +  +  R  E       LVG K DL      R+VS  EA   
Sbjct: 75  FLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDK---RQVSVEEAANL 131

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
           A Q  + + ETS+++   V+  F  + +EI 
Sbjct: 132 AEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 77.0 bits (190), Expect = 3e-18
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 3   TLLYLYIQI------SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRN 56
           TLL   +          P    ++   ++   DG   K  L DTAGQE + +I + YYR 
Sbjct: 16  TLLNRLLGNKISITEYKPGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYDAIRRLYYRA 74

Query: 57  SVGALLVYDITSRA-SFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEA 114
              +L V+DI       E I      E   H E   P+  LVG K+DL       ++   
Sbjct: 75  VESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPII-LVGNKIDLRD----AKLKTH 129

Query: 115 EAKAFASQNDILHFETSSRSGFQVENAF 142
            A  FA  N       S+ +G  +++AF
Sbjct: 130 VAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 78.0 bits (192), Expect = 3e-18
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +I   DPT+  D + +   + +   + L + DTAGQE + ++   Y R   G L VY IT
Sbjct: 30  FIDEYDPTIE-DSYRKQCVIDEETCL-LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSIT 87

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           SR+SFE I  +  +  R  +  R    LVG K DL      R+VS  E +  A    I  
Sbjct: 88  SRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE---RQVSTGEGQELAKSFGIPF 144

Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS++    V+ AF  + +EI
Sbjct: 145 LETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 76.8 bits (189), Expect = 6e-18
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 15  TVGVDFFARLVTM-RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           T G D   + V +      ++L ++D+AGQE F  + ++ +       +VYD+T+  SF 
Sbjct: 34  TTGCDLVVKTVPVPDTSDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFN 93

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           +   W+   + H         LVG K DL      REV  A+A+A A  N +  +ETS++
Sbjct: 94  NCSRWINRVRTHSHGLHTPGVLVGNKCDLTDR---REVDAAQAQALAQANTLKFYETSAK 150

Query: 134 SGFQVENAF 142
            G   E  F
Sbjct: 151 EGVGYEAPF 159

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 75.9 bits (187), Expect = 9e-18
 Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  D + + V + DG    L + DTAGQE + ++   Y R   G L V+ I SR SF
Sbjct: 31  DPTIE-DSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSF 88

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R VS  + +  A    I + ETS+
Sbjct: 89  EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA----RTVSTRQGQDLAKSYGIPYIETSA 144

Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE AF  + +EI
Sbjct: 145 KTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (188), Expect = 1e-17
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 16/140 (11%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITK-SYYRNSVGALLVYDITSRASF 72
           PTV  D ++  VT+ DG ++ L LWDTAGQE +  +   SY +  V  LL + + S +SF
Sbjct: 31  PTV-FDNYSANVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPQTDV-FLLCFSVDSPSSF 87

Query: 73  EHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE--------VSEAEAKAFASQ- 122
           E++   W  E K +  P+ P+  LVG K+DL   G   +        ++  E +  A + 
Sbjct: 88  ENVKTKWYPEIKHYC-PNVPII-LVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEI 145

Query: 123 NDILHFETSSRSGFQVENAF 142
             + + E S+ +   ++  F
Sbjct: 146 GAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 19/143 (13%)

Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
            ++   DPT+  D + +   + DG   +L + DTAGQE F ++ + Y R   G LLV+ +
Sbjct: 26  YFVTDYDPTIE-DSYTKQCEI-DGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSV 83

Query: 67  TSRASFEHIPVWMMEAKRHIEPHR-------PVFALVGCKLDLLQSGVPREVSEAEAKAF 119
           T R SFE +       K H +  R       P+  LVG K DL      R+VS  E +  
Sbjct: 84  TDRGSFEEVD------KFHTQILRVKDRDEFPMI-LVGNKADLEHQ---RQVSREEGQEL 133

Query: 120 ASQNDILHFETSSRSGFQVENAF 142
           A Q  I + ETS++    V+ AF
Sbjct: 134 ARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 73.5 bits (181), Expect = 8e-17
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 19/146 (13%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF--RSITKSYYRNSVGALLVYDITSRA 70
           +P +    ++R VT+ DG ++ L++ DT GQ++       +   R + G +LVY IT R+
Sbjct: 29  EPNLE-SLYSRQVTI-DGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRS 86

Query: 71  SFEHIPVWMMEAKRHI-EPHR-----PVFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
           SF+ +     +  + I E  +     PV  LVG K DLL S   R+VS  E +  A +  
Sbjct: 87  SFDVV----SQLLQLIREIKKRDGEIPVI-LVGNKADLLHS---RQVSTEEGQKLALELG 138

Query: 125 ILHFETSSRSGF-QVENAFTAVTQEI 149
            L FE S+   + +V+N F  + +E+
Sbjct: 139 CLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 71.8 bits (176), Expect = 4e-16
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 7/143 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +I+  DPT+  DF+ + + + D +   L++ DTAG E+F S+   Y +N  G ++VY + 
Sbjct: 26  FIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLV 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           ++ +F+ I   M +    ++ +  V   LVG K+DL      REVS AE +A A +    
Sbjct: 84  NQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDL---ESEREVSSAEGRALAEEWGCP 139

Query: 127 HFETSSRSGFQVENAFTAVTQEI 149
             ETS++S   V   F  + +++
Sbjct: 140 FMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITS 68
            T   D + + +   D  ++KL L DT G + F       + +   R +   LLV D T 
Sbjct: 31  TTRDPDVYVKEL---DKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTD 87

Query: 69  RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHF 128
           R S E   + ++   R  +   P+  LVG K+DLL+     E+   E  A      +  F
Sbjct: 88  RESEEDAKLLILRRLR--KEGIPII-LVGNKIDLLEEREVEELLRLEELAKILGVPV--F 142

Query: 129 ETSSRSGFQVENAFTAVTQ 147
           E S+++G  V+  F  + +
Sbjct: 143 EVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 69.7 bits (171), Expect = 4e-15
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 4   LLYLYIQISDPTVGV-DFFARLVT---MRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
           LL +Y Q S P   V   F   VT   + +G  I+L LWDTAGQE +  +    Y +   
Sbjct: 19  LLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQEDYDRLRPLSYPDVDV 78

Query: 60  ALLVYDITSRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPR 109
            L+ Y + +  S +++   W  E   H  P  P+  LVG K DL         L++    
Sbjct: 79  ILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIV-LVGLKTDLRKDKNSVSKLRAQGLE 136

Query: 110 EVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            V+  + ++ A     + + E S++    V+  F A      ++
Sbjct: 137 PVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSK 180

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 69.2 bits (170), Expect = 5e-15
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 29/151 (19%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQE---RFRSITKSYYRNSVGALLVYDITSRA 70
           PTV  ++ A      DG  ++L LWDTAGQE   R R ++   Y ++   L+ + + S A
Sbjct: 29  PTVFENYSA--DVEVDGKPVELGLWDTAGQEDYDRLRPLS---YPDTDVFLICFSVDSPA 83

Query: 71  SFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLL-----------QSGVPREVSEAEAKA 118
           SFE++   W  E K    P+ P+  LVG KLDL            +   P    + +A A
Sbjct: 84  SFENVKEKWYPEVKHFC-PNVPII-LVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALA 141

Query: 119 FASQNDIL---HFETSSRSGFQVENAFTAVT 146
                 I    + E S+ +   V   F    
Sbjct: 142 ----KRIGAVKYLECSALTQEGVREVFEEAI 168

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 8/129 (6%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+GV+          G +I+   WDTAGQE+F  +   YY +   A++++D+T+R +++
Sbjct: 44  PTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 102

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++P W  +  R  E + P+  L G K+D+      R+V +A+   F  + ++ ++E S++
Sbjct: 103 NVPTWHRDLCRVCE-NIPI-VLCGNKVDVKN----RQV-KAKQVTFHRKKNLQYYEISAK 155

Query: 134 SGFQVENAF 142
           S +  E  F
Sbjct: 156 SNYNFEKPF 164

Length = 219

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 16/149 (10%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
            PT+  + F++++T + G    L++ DTAGQ+ +  + + Y     G +LVY +TSR SF
Sbjct: 31  YPTIE-NTFSKIITYK-GQEYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF 88

Query: 73  EHIPVWM-----MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           E + V       M  K  +    P+  LVG K DL    + R+VS  E K  A       
Sbjct: 89  EVVKVIYDKILDMLGKESV----PI-VLVGNKSDL---HMERQVSAEEGKKLAESWGAAF 140

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
            E+S++    VE AF  + +EI  +V++ 
Sbjct: 141 LESSAKENENVEEAFELLIEEI-EKVENP 168

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 67.0 bits (163), Expect = 6e-14
 Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 8/129 (6%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GV+    LV   +   I+  +WDTAGQE+F  +   YY     A++++D+T+R +++
Sbjct: 26  ATLGVEVHP-LVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYK 84

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++
Sbjct: 85  NVPNWHRDLVRVCE-NIPI-VLCGNKVDVKDRKV-----KAKSITFHRKKNLQYYDISAK 137

Query: 134 SGFQVENAF 142
           S +  E  F
Sbjct: 138 SNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 67.0 bits (164), Expect = 6e-14
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 16/142 (11%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+GV+    L    +   I   +WDTAGQE+F  +   YY     A++++D+TSR +++
Sbjct: 40  PTLGVEV-HPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYK 98

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA----FASQNDILHFE 129
           ++P W  +  R  E    V  LVG K+D         V + + KA    F  + ++ +++
Sbjct: 99  NVPNWHRDIVRVCENIPIV--LVGNKVD---------VKDRQVKARQITFHRKKNLQYYD 147

Query: 130 TSSRSGFQVENAFTAVTQEIYN 151
            S++S +  E  F  + + + N
Sbjct: 148 ISAKSNYNFEKPFLWLARRLTN 169

Length = 215

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 66.5 bits (162), Expect = 1e-13
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 48/181 (26%)

Query: 3   TLLYLYI----QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +LL+ Y+    + +  TVG  F+     ++      + +WDTAG+E+F  +   Y R + 
Sbjct: 15  SLLHRYMERRFKDTVSTVGGAFY-----LKQWGPYNISIWDTAGREQFHGLGSMYCRGAA 69

Query: 59  GALLVYDITSRASFEHIPVWMMEAK----RHIEPHRPVFALVGCKLDLLQSG-------- 106
             +L YD+++  S E      +E +            +FA+VG KLDL + G        
Sbjct: 70  AVILTYDVSNVQSLEE-----LEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKD 124

Query: 107 --------VPREVSEAEAKAFASQ--------------NDILHFETSSRSGFQVENAFTA 144
                     R+V+  +AKAF  +               + + FETS+++G+ V+  F  
Sbjct: 125 AGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEY 184

Query: 145 V 145
           +
Sbjct: 185 L 185

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 18/134 (13%)

Query: 14  PTVGV-----DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS 68
            T+GV     DF        +  +I+  +WDTAGQE+F  +   YY     A++++D+TS
Sbjct: 31  ATLGVEVHPLDFHT------NRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS 84

Query: 69  RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHF 128
           R +++++P W  +  R +  + P+  L G K+D     +     + +   F  + ++ ++
Sbjct: 85  RVTYKNVPNWHRDLVR-VCENIPI-VLCGNKVD-----IKDRKVKPKQITFHRKKNLQYY 137

Query: 129 ETSSRSGFQVENAF 142
           E S++S +  E  F
Sbjct: 138 EISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 8/114 (7%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
           +G  I +  WDTAGQERF+++  SYY  +   +LV+D+T + +++++  W  E  R   P
Sbjct: 45  EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL-REYRP 103

Query: 89  HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAF 142
             P   +V  K+DL  S     V++ +   FA ++++  +  S+  G  V   F
Sbjct: 104 EIPCI-VVANKIDLDPS-----VTQ-KKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F A +V   DG  + L LWDTAGQE +  +    YR +   LL + + S+AS+E
Sbjct: 32  PTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 89

Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E  RH  P  P+  LVG KLDL
Sbjct: 90  NVLKKWIPEL-RHYAPGVPI-VLVGTKLDL 117

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 63.0 bits (153), Expect = 7e-13
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           +++   DPT+  D + + + + D  +  L++ DTAG E+F ++   Y +N  G  LVY I
Sbjct: 25  IFVDKYDPTIE-DSYRKQIEV-DCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSI 82

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
           T++ SF  +     +  R  +       LVG K DL      R VS+ E +  A Q  + 
Sbjct: 83  TAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVSKEEGQNLARQWGNC 139

Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
              ETS++S   V+  F  + ++I
Sbjct: 140 PFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 6/143 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +I+  DPT+  D + + V + DG +  L++ DTAG E+F ++ + Y ++  G LLVY +T
Sbjct: 26  FIESYDPTIE-DSYRKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVT 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
           S AS   +     +  R  +       LVG K DL      R+VS  +  + + Q  ++ 
Sbjct: 84  SEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD---RQVSREDGVSLSQQWGNVP 140

Query: 127 HFETSSRSGFQVENAFTAVTQEI 149
            +ETS+R    V+  F  + ++I
Sbjct: 141 FYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           YIQ    T+GV+F  + +++R G  I   +WD  GQ  F ++     +++V  L ++D+T
Sbjct: 29  YIQ----TLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLT 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE---AEAKAFASQND 124
            +++   I  W  +A+   +   P+  LVG K DL    +P E  E    +A+ +A    
Sbjct: 84  RKSTLNSIKEWYRQARGFNKTAIPI--LVGTKYDLFAD-LPPEEQEEITKQARKYAKAMK 140

Query: 125 ILHFETSSRSGFQVENAFTAVTQEIYN 151
                 S+     V+  F  V  ++++
Sbjct: 141 APLIFCSTSHSINVQKIFKFVLAKVFD 167

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           ++++  DPT+  D + + V + DG +  L++ DTAG E+F ++   Y +N  G +LVY I
Sbjct: 25  IFVEKYDPTIE-DSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSI 82

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T++++F  +     +  R  +       LVG K DL      R V + + +  A Q    
Sbjct: 83  TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWGCA 139

Query: 127 HFETSSRSGFQVENAFTAVTQEI 149
             ETS+++   V   F  + ++I
Sbjct: 140 FLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 15/145 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 32  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 89

Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ-SGVPRE--------VSEAEAKAFASQ- 122
           +IP  W  E K H  P+ P+  LVG K DL       RE        V   E +A A + 
Sbjct: 90  NIPEKWTPEVK-HFCPNVPII-LVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKI 147

Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
               + E S+++   V   F   T+
Sbjct: 148 GAFGYLECSAKTKEGVREVFEMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
           DG  ++L LWDTAGQE +  +    Y  +   L+ + I +  S E++    +E  R   P
Sbjct: 45  DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP 104

Query: 89  HRPVFALVGCKLDLLQSGVPRE-------VSEAEAKAFASQ-NDILHFETSSRSGFQVEN 140
           + PV  LVG K DL Q  V +        V   +AK  A       + E S+ +G  V++
Sbjct: 105 NVPVI-LVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDD 163

Query: 141 AFTAVTQ 147
            F A T+
Sbjct: 164 VFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 19  DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV- 77
           D F+ +V + DG  ++LQL DTAGQ+ F  +    Y ++   LL + + + +SF++I   
Sbjct: 35  DNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEK 93

Query: 78  WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ 122
           W+ E ++H  P  P+  LVG + DL         L     + VS++ AKA A +
Sbjct: 94  WIPEIRKH-NPKAPII-LVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 11/93 (11%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQE---RFRSITKSYYRNSVGALLVYDITSRA 70
           PTV  ++ A +  M DG  + L LWDTAGQE   R R +  SY +  V  L+ + + S A
Sbjct: 32  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPL--SYPQTDV-FLICFSLVSPA 86

Query: 71  SFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           SFE++   W  E + H  P+ P+  LVG KLDL
Sbjct: 87  SFENVRAKWYPEVRHHC-PNTPII-LVGTKLDL 117

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 17  GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP 76
           G D + R V++ DG    L ++D   QE    +  S  +     ++VY +T R+SFE   
Sbjct: 34  GDDTYERTVSV-DGEEATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKAS 92

Query: 77  VWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
              ++ +R       P+  LVG K DL++S   REVS  E +A A   D    ETS+
Sbjct: 93  ELRIQLRRARQAEDIPII-LVGNKSDLVRS---REVSVQEGRACAVVFDCKFIETSA 145

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 29/146 (19%)

Query: 19  DFFARLVTMRDGARIKLQLWDTAG----QERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           +   R   + DG  + L+LWDT G      RF     +Y R+ V  LL + I S  S  +
Sbjct: 52  EVLERSRDVVDGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRN 105

Query: 75  IP-VWMMEAKRHIEPHRPVFALVGCKLDL----------LQSGVPREVSEAE------AK 117
           +  +W  E +    P  PV  LVGCKLDL           +  + R +  A+       +
Sbjct: 106 VKTMWYPEIRHFC-PRVPVI-LVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163

Query: 118 AFASQNDILHFETSSRSGFQVENAFT 143
           A A +  I ++ETS  + F V++ F 
Sbjct: 164 AVAKELGIPYYETSVVTQFGVKDVFD 189

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   +K  +WD  GQ++ R + K YY N+ G + V D + R   E
Sbjct: 29  PTIG--FNVETVEYKN---VKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIE 83

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
                + +     E       ++  K DL  +    E+ E                 S+ 
Sbjct: 84  EAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSAV 143

Query: 134 SG 135
           +G
Sbjct: 144 TG 145

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 35  LQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVW--MMEAKRHIEPHRP 91
           LQ+ DT G  +F ++ +         +LVY ITS+ S E + P++  + E K +     P
Sbjct: 51  LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIP 110

Query: 92  VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
           +  LVG K D   S   REVS +E  A A   +    ETS+++   V+  F    QE+ N
Sbjct: 111 IM-LVGNKCDESPS---REVSSSEGAALARTWNCAFMETSAKTNHNVQELF----QELLN 162

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T G++     +   +  +I+L +WD  GQE + +  + +  +    LLV+D+ +      
Sbjct: 33  THGINVQDWKIPAPERKKIRLNVWDFGGQEIYHATHQFFLTSRSLYLLVFDLRTGDEVSR 92

Query: 75  IPVWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +P W+    R I+      PV  LVG  +D        +      K  A  NDI     S
Sbjct: 93  VPYWL----RQIKAFGGVSPVI-LVGTHIDESCDEDILK-KALNKKFPAIINDIH--FVS 144

Query: 132 SRSGFQVENAFTAVTQE 148
            ++G  +     A+ +E
Sbjct: 145 CKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 9/139 (6%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  D +     + +   + L + DTAGQ  F ++   Y R   G ++ Y +T R SF
Sbjct: 32  DPTIE-DAYKTQARIDNEPAL-LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSF 89

Query: 73  EHIPVW--MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +    +  ++   R  E   P+  LVG K+DL Q    R+V+  E +  A + +   FET
Sbjct: 90  QEASEFKELITRVRLTE-DIPL-VLVGNKVDLEQQ---RQVTTEEGRNLAREFNCPFFET 144

Query: 131 SSRSGFQVENAFTAVTQEI 149
           S+   F +++AF  + +EI
Sbjct: 145 SAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEA--KRHI 86
           DG    L +WD  G+E  +     + + +   LLVYD+T R S   +   +      R +
Sbjct: 44  DGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKL 103

Query: 87  EPHRPVFALVGCKL 100
               PV  LVG KL
Sbjct: 104 GGKIPVI-LVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 49.4 bits (118), Expect = 9e-08
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIE 87
           D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + + +   W  E +    
Sbjct: 45  DKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC- 103

Query: 88  PHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQNDILHF-ETSSR-SGF 136
           P+ PV  LVGCK DL         L +     VS  + +  A Q     + E S++ S  
Sbjct: 104 PNTPVL-LVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSEN 162

Query: 137 QVENAFTAVT 146
            V + F   T
Sbjct: 163 SVRDVFEMAT 172

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 49.5 bits (118), Expect = 9e-08
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           Q+ +PTV  ++   +    DG  ++L LWDTAGQE F  +    Y ++   +L + + + 
Sbjct: 27  QVYEPTVFENYIHDIFV--DGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNP 84

Query: 70  ASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE-----VSEAEAKAFASQ- 122
            S E++   W+ E + H    + V  LV  K DL +    R+     +S  E  A A + 
Sbjct: 85  DSLENVESKWLAEIRHHCPGVKLV--LVALKCDLREPRNERDRGTHTISYEEGLAVAKRI 142

Query: 123 NDILHFETSSRSGFQVENAFT 143
           N   + E S++    V  AFT
Sbjct: 143 NACRYLECSAKLNRGVNEAFT 163

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 7/91 (7%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDITSRASF 72
           PTV  ++ A+  T  DG  + L LWDTAGQE + R  T SY + +V  ++ + I S +S+
Sbjct: 34  PTVFDNYSAQ--TAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNV-FIICFSIASPSSY 90

Query: 73  EHIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           E++   W  E   H  P+ P+  LVG K DL
Sbjct: 91  ENVRHKWHPEVCHHC-PNVPIL-LVGTKKDL 119

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    VT ++   I   +WD  GQ++ R + + YY N+ G + V D   R   +
Sbjct: 43  PTIG--FNVETVTYKN---ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRID 97

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    V  +   K DL  +    E++E
Sbjct: 98  EAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITE 137

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  VT+  G +  L L+DTAGQE +  +    Y  +   L+ + + + ASF+
Sbjct: 31  PTV-FDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 88

Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E K +  P+ P + L+G ++DL
Sbjct: 89  NVKEEWVPELKEYA-PNVP-YLLIGTQIDL 116

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A L T  +  R++L LWDT+G   + ++    Y +S   LL +DI+    F+
Sbjct: 44  PTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFD 101

Query: 74  H-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
             +  W  E   +    R    L+GCK DL
Sbjct: 102 SALKKWRAEILDYCPSTR--ILLIGCKTDL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 27/117 (23%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVY--------- 64
           PTVG +   R VT      + +++WD  GQ RFRS+ + Y R  V A +VY         
Sbjct: 30  PTVGFNM--RKVTK---GNVTIKVWDLGGQPRFRSMWERYCR-GVNA-IVYVVDAADREK 82

Query: 65  ---------DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS 112
                    D+  + S E IP+ ++  K  +     V  L+  +++ L+S   REVS
Sbjct: 83  LEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE-QMN-LKSITDREVS 137

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L +WDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 32  PTVFENYTASFEI--DKHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLD 89

Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
            +   W  E +      + V  LVGCKLD+
Sbjct: 90  SVLKKWQGETQEFCPNAKLV--LVGCKLDM 117

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 3   TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           T+LY      I  + PT+G  F    VT ++   +K  +WD  GQE  R + ++Y+ N+ 
Sbjct: 29  TILYKLKLGEIVTTIPTIG--FNVETVTYKN---VKFTVWDVGGQESLRPLWRNYFPNTD 83

Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEA 114
             + V D   R   E     +       E       ++  K DL  +    E+ E 
Sbjct: 84  AVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIREL 139

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 32  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 89

Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 90  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 117

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 17/85 (20%)

Query: 3  TLLYLY----IQISDPTVGVDFFARLVTMRDGAR-IKLQLWDTAGQERFRSITKSYYRNS 57
          TLLY      +  + PTVG +     V M    + + L +WD  GQE+ R++ K Y  N+
Sbjct: 14 TLLYKLKHAELVTTIPTVGFN-----VEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENT 68

Query: 58 VGALLVYDIT-------SRASFEHI 75
           G + V D +       S+   +HI
Sbjct: 69 DGLVYVVDSSDEARLDESQKELKHI 93

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 36  PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 93

Query: 74  HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
            +   + + K  I+   P     LVGCK DL
Sbjct: 94  SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
          PT G +     V++ +   +    WD  GQE+ R + KSY R + G + V D
Sbjct: 33 PTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVD 84

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD----ITSRA 70
           TV +DF     ++       + L+ T GQERF+ + +   R +VGA+++ D    IT  A
Sbjct: 54  TVAMDF----GSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA 109

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGC-KLDLLQSGVPREVSEAEAKAFASQNDI 125
                   +++      P  PV  +V   K DL  +  P ++ EA      S   I
Sbjct: 110 EE------IIDFLTSRNPI-PV--VVAINKQDLFDALPPEKIREALKLELLSVPVI 156

Length = 187

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 29/112 (25%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 39  PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRID 93

Query: 74  HIPVWMMEAKRHIEPHRP------------VFALVGCKLDLLQSGVPREVSE 113
                  EA++  E HR             VFA    K DL  +  P E+ E
Sbjct: 94  -------EARQ--ELHRIINDREMRDALLLVFA---NKQDLPDAMKPHEIQE 133

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 61  LLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA 120
           + V+ +   ASF+ +     +   +         LVG + D + +  PR + +A A+   
Sbjct: 70  IFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQ-DAISASNPRVIDDARARQLC 128

Query: 121 SQ-NDILHFETSSRSGFQVENAFTAVTQEI 149
           +      ++ET +  G  VE  F    Q+I
Sbjct: 129 ADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 28  RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI- 86
            DG   KL +WD  GQ + R   ++Y+ N+   + V D   R  FE       EA + + 
Sbjct: 56  ADG--FKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFE-------EAGQELV 106

Query: 87  -----EPHRPVFALV-GCKLDLLQSGVPREVSEA 114
                E    V  LV   K DLL +    EV+EA
Sbjct: 107 ELLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEA 140

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 33  IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKR---HIEPH 89
           I+  +WD  GQE  RS   +YY N+   +LV D T R   E +P+   E  +   H +  
Sbjct: 59  IRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDR---ERLPLTKEELYKMLAHEDLR 115

Query: 90  RPVFALVGCKLDLLQSGVPREVSEA 114
           + V  ++  K DL  +  P E+SE+
Sbjct: 116 KAVLLVLANKQDLKGAMTPAEISES 140

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
          PT+G  F    V  ++   +K  +WD  GQ++ R + + YY+N+ G + V D   R
Sbjct: 47 PTIG--FNVETVEYKN---LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR 97

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   I   +WD  GQ++ R + + Y++N+ G + V D   R    
Sbjct: 30  PTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIG 84

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    V  +   K DL  +    EV++
Sbjct: 85  EAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTD 124

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 10/77 (12%)

Query: 15  TVGVDFFARLVTMRDGARIK----LQLWDTAGQ----ERFRSITKSYYRNSV-GALLVYD 65
           TVG     R  T  +G   +    ++LWD  G     E  +S T++ + N + G + V+D
Sbjct: 32  TVGCSVDVRHHTYGEGTPEEKTFYVELWDVGGSVGSAESVKS-TRAVFYNQINGIIFVHD 90

Query: 66  ITSRASFEHIPVWMMEA 82
           +T++ S +++  W +EA
Sbjct: 91  LTNKKSSQNLYRWSLEA 107

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 21/93 (22%)

Query: 31  ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE--- 87
             +K   +D  G E+ R + K Y+    G + + D      F+       E+K  ++   
Sbjct: 61  GNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQ-------ESKEELDSLL 113

Query: 88  -----PHRPVFALVGCKLDLLQSGVPREVSEAE 115
                 + P   ++G K+D      P  VSE E
Sbjct: 114 NDEELANVP-ILILGNKIDK-----PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           +L  WD  GQE  RS+   YY  S G + V D T R  F 
Sbjct: 51 ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFN 91

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
KOG0091|consensus	213		100.0
KOG0098|consensus	216		100.0
KOG0078|consensus	207		100.0
KOG0086|consensus	214		100.0
KOG0079|consensus	198		100.0
KOG0087|consensus	222		100.0
KOG0394|consensus	210		100.0
KOG0080|consensus	209		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0097|consensus	215		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0093|consensus	193		100.0
KOG0088|consensus	218		100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0083|consensus	192		100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0095|consensus	213		100.0
KOG0081|consensus	219		99.98
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
PTZ00099	176	rab6; Provisional	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
PLN03108	210	Rab family protein; Provisional	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
KOG0393|consensus	198		99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
KOG0395|consensus	196		99.95
PLN03118	211	Rab family protein; Provisional	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.95
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.94
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.94
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.94
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.94
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.93
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.93
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.93
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.92
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.92
PLN00223	181	ADP-ribosylation factor; Provisional	99.92
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.92
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.92
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.92
PTZ00133	182	ADP-ribosylation factor; Provisional	99.92
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.92
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.91
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.91
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.91
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.91
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.9
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.9
KOG4252|consensus	246		99.9
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.9
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.89
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.89
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.89
KOG0070|consensus	181		99.89
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.88
KOG0073|consensus	185		99.88
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.88
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.88
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.88
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.87
PLN00023	334	GTP-binding protein; Provisional	99.87
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.86
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.86
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.86
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.86
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.85
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.83
KOG0071|consensus	180		99.83
KOG0075|consensus	186		99.83
KOG3883|consensus	198		99.83
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.83
KOG4423|consensus	229		99.78
KOG1673|consensus	205		99.78
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.78
COG1100	219	GTPase SAR1 and related small G proteins [General	99.77
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.77
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.75
KOG0072|consensus	182		99.74
KOG0096|consensus	216		99.74
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.73
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.73
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.73
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.72
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.72
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.7
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.69
KOG0076|consensus	197		99.69
PRK12299	335	obgE GTPase CgtA; Reviewed	99.69
KOG0074|consensus	185		99.66
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.65
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.63
PRK03003	472	GTP-binding protein Der; Reviewed	99.63
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.63
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.62
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.62
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.61
PRK04213	201	GTP-binding protein; Provisional	99.61
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.58
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.57
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.57
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.56
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.55
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.55
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.55
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.54
PRK15494	339	era GTPase Era; Provisional	99.54
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.54
PRK12297	424	obgE GTPase CgtA; Reviewed	99.53
CHL00189	742	infB translation initiation factor 2; Provisional	99.52
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.52
PRK05306	787	infB translation initiation factor IF-2; Validated	99.51
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.51
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.5
PRK05433	600	GTP-binding protein LepA; Provisional	99.5
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.5
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.49
PRK12296	500	obgE GTPase CgtA; Reviewed	99.47
PRK11058	426	GTPase HflX; Provisional	99.46
cd00881	189	GTP_translation_factor GTP translation factor fami	99.44
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.44
PRK00093	435	GTP-binding protein Der; Reviewed	99.43
COG2229	187	Predicted GTPase [General function prediction only	99.42
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.42
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.42
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.4
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.39
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.39
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.39
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.38
PRK00093	435	GTP-binding protein Der; Reviewed	99.37
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.36
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.35
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.34
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.34
PRK12298	390	obgE GTPase CgtA; Reviewed	99.34
PRK10218	607	GTP-binding protein; Provisional	99.34
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.33
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.31
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.3
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.3
PRK12317	425	elongation factor 1-alpha; Reviewed	99.3
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.29
KOG0462|consensus	650		99.29
PRK00089	292	era GTPase Era; Reviewed	99.28
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.27
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.25
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.24
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.2
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.19
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.16
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.15
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.15
PRK04004	586	translation initiation factor IF-2; Validated	99.15
PRK14845	1049	translation initiation factor IF-2; Provisional	99.13
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.12
KOG0082|consensus	354		99.09
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.09
KOG0077|consensus	193		99.07
COG0486	454	ThdF Predicted GTPase [General function prediction	99.06
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.06
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.04
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.02
PLN00043	447	elongation factor 1-alpha; Provisional	99.0
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.97
PRK12736	394	elongation factor Tu; Reviewed	98.97
KOG1145|consensus	683		98.97
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.96
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.96
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.95
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.93
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.93
COG1160	444	Predicted GTPases [General function prediction onl	98.92
PRK00098	298	GTPase RsgA; Reviewed	98.92
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.92
PRK12735	396	elongation factor Tu; Reviewed	98.91
PRK12289	352	GTPase RsgA; Reviewed	98.91
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.91
KOG0705|consensus	749		98.91
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.9
KOG1489|consensus	366		98.89
KOG1707|consensus	625		98.88
PRK13351	687	elongation factor G; Reviewed	98.86
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.86
COG1160	444	Predicted GTPases [General function prediction onl	98.85
PRK12288	347	GTPase RsgA; Reviewed	98.84
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.83
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.81
COG1159	298	Era GTPase [General function prediction only]	98.8
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.79
PRK12740	668	elongation factor G; Reviewed	98.78
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.78
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.72
PRK13768	253	GTPase; Provisional	98.68
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.66
KOG0090|consensus	238		98.66
COG2262	411	HflX GTPases [General function prediction only]	98.65
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.64
PRK09866	741	hypothetical protein; Provisional	98.63
PRK00049	396	elongation factor Tu; Reviewed	98.6
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.59
PLN03126	478	Elongation factor Tu; Provisional	98.59
CHL00071	409	tufA elongation factor Tu	98.58
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.56
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.55
PTZ00141	446	elongation factor 1- alpha; Provisional	98.53
PLN03127	447	Elongation factor Tu; Provisional	98.53
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.51
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.48
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.47
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.45
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.44
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.44
PRK12739	691	elongation factor G; Reviewed	98.43
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.42
KOG1707|consensus	625		98.42
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.36
COG0536	369	Obg Predicted GTPase [General function prediction	98.35
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.34
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.34
COG0218	200	Predicted GTPase [General function prediction only	98.31
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.31
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.29
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.28
PRK13796	365	GTPase YqeH; Provisional	98.28
KOG0099|consensus	379		98.26
KOG1144|consensus	1064		98.25
KOG1423|consensus	379		98.25
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.23
COG1084	346	Predicted GTPase [General function prediction only	98.23
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.23
COG1163	365	DRG Predicted GTPase [General function prediction	98.22
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.21
KOG1191|consensus	531		98.18
KOG3905|consensus	473		98.16
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.15
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.14
PRK00007	693	elongation factor G; Reviewed	98.13
KOG0458|consensus	603		98.11
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.09
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.08
PRK01889	356	GTPase RsgA; Reviewed	98.05
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.04
PRK09602	396	translation-associated GTPase; Reviewed	98.01
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.98
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.98
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.97
KOG3886|consensus	295		97.93
COG1162	301	Predicted GTPases [General function prediction onl	97.9
KOG1490|consensus	620		97.89
KOG0085|consensus	359		97.82
KOG0460|consensus	449		97.77
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.75
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.73
PRK07560	731	elongation factor EF-2; Reviewed	97.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.67
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.59
KOG0461|consensus	522		97.56
KOG0468|consensus	971		97.56
PTZ00416	836	elongation factor 2; Provisional	97.49
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.48
KOG1532|consensus	366		97.24
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.23
COG3596	296	Predicted GTPase [General function prediction only	97.17
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.16
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.09
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.06
KOG3887|consensus	347		97.01
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.9
KOG0466|consensus	466		96.87
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	96.73
cd03110	179	Fer4_NifH_child This protein family's function is	96.63
KOG0467|consensus	887		96.62
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.6
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	96.53
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.52
KOG0464|consensus	753		96.48
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.45
KOG0465|consensus	721		96.43
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.12
PTZ00258	390	GTP-binding protein; Provisional	96.0
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.92
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.8
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.77
KOG1143|consensus	591		95.6
KOG4273|consensus	418		95.52
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	94.74
KOG0469|consensus	842		94.69
COG1161	322	Predicted GTPases [General function prediction onl	94.57
KOG3929|consensus	363		93.81
KOG0447|consensus	980		93.65
KOG1424|consensus	562		93.55
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	93.46
KOG1954|consensus	532		93.41
PRK09601	364	GTP-binding protein YchF; Reviewed	93.38
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	93.35
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.33
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	93.31
KOG0459|consensus	501		92.87
PHA02518	211	ParA-like protein; Provisional	91.49
KOG0463|consensus	641		91.12
KOG0448|consensus	749		90.73
PRK14974	336	cell division protein FtsY; Provisional	90.61
COG1149	284	MinD superfamily P-loop ATPase containing an inser	90.55
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	90.32
PRK10416	318	signal recognition particle-docking protein FtsY;	90.3
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	90.16
KOG2484|consensus	435		90.15
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	90.04
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	89.36
COG5019	373	CDC3 Septin family protein [Cell division and chro	89.25
cd02036	179	MinD Bacterial cell division requires the formatio	89.18
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	89.06
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	88.18
cd03111	106	CpaE_like This protein family consists of proteins	87.69
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	87.31
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	86.82
KOG2423|consensus	572		83.73
PRK00771	437	signal recognition particle protein Srp54; Provisi	81.61
KOG2486|consensus	320		81.46
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	80.89
TIGR00959	428	ffh signal recognition particle protein. This mode	80.68
KOG1547|consensus	336		80.05

>KOG0084|consensus

Probab=100.00  E-value=4.7e-40  Score=234.43  Aligned_cols=176  Identities=39%  Similarity=0.585  Sum_probs=154.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+.||     .+.|..|||+||..+++.+ +|+.++|++|||+||++|+.+...||++++++|+|||+++.+||+.+.
T Consensus        23 tCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~  101 (205)
T KOG0084|consen   23 TCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVK  101 (205)
T ss_pred             hhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHH
Confidence            5899999     8899999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-EEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      .|+.++..+.. .+.|.++||||+|+.+   .+.++.++++.|+..++++ ++++||+++.||+++|..|...+..++..
T Consensus       102 ~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~---~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~  177 (205)
T KOG0084|consen  102 RWIQEIDRYAS-ENVPKLLVGNKCDLTE---KRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGL  177 (205)
T ss_pred             HHHHHhhhhcc-CCCCeEEEeeccccHh---heecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhccc
Confidence            99999999864 4567779999999988   6999999999999999998 99999999999999999999999988766


Q ss_pred             CCccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38           156 GDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC  193 (193)
Q Consensus       156 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc  193 (193)
                      ......          +.+++..... +|..+..++||
T Consensus       178 ~~~~~~----------~~~~~~ql~~-~p~~~~~~~~C  204 (205)
T KOG0084|consen  178 HVKWST----------ASLESVQLKG-TPVKKSNGGCC  204 (205)
T ss_pred             CCCCCc----------CCCCceeeCC-CCcccccCCCC
Confidence            643332          2333333333 36666777788

>KOG0092|consensus

Probab=100.00  E-value=8.2e-38  Score=222.18  Aligned_cols=152  Identities=39%  Similarity=0.654  Sum_probs=140.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      .||+.||     .+...||||..|.++.+.+ ++..++|.+|||+|+++|.++.++||++++++|+|||+++.+||..+.
T Consensus        19 SSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK   97 (200)
T KOG0092|consen   19 SSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAK   97 (200)
T ss_pred             hhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHH
Confidence            3788888     4445999999999999999 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+.++..... ++..|.|||||+||.+   .+.+..+++..+|.+.+..|+|+||++|.||+++|..|.+.+.......
T Consensus        98 ~WvkeL~~~~~-~~~vialvGNK~DL~~---~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen   98 NWVKELQRQAS-PNIVIALVGNKADLLE---RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQE  173 (200)
T ss_pred             HHHHHHHhhCC-CCeEEEEecchhhhhh---cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccc
Confidence            99999999875 6788889999999988   6899999999999999999999999999999999999999988876665


Q ss_pred             Cc
Q psy38           157 DY  158 (193)
Q Consensus       157 ~~  158 (193)
                      ..
T Consensus       174 ~~  175 (200)
T KOG0092|consen  174 RQ  175 (200)
T ss_pred             cc
Confidence            43

>KOG0094|consensus

Probab=100.00  E-value=4.6e-38  Score=223.68  Aligned_cols=147  Identities=35%  Similarity=0.587  Sum_probs=139.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     +..|.+|||+||..+++.+ .+++++|++|||+||++|+.+.+.|++++.++|+|||+++..||++..
T Consensus        36 TslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~  114 (221)
T KOG0094|consen   36 TSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTS  114 (221)
T ss_pred             HHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHH
Confidence            5899998     8899999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +|++++..........|+|||||.||.+   .++++.+++...|+++++.|.++||+.|.||.++|..|...+...
T Consensus       115 kWi~dv~~e~gs~~viI~LVGnKtDL~d---krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  115 KWIEDVRRERGSDDVIIFLVGNKTDLSD---KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHhccCCCceEEEEEcccccccc---hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence            9999999998877788899999999988   699999999999999999999999999999999999977766544

>KOG0091|consensus

Probab=100.00  E-value=1.7e-38  Score=219.73  Aligned_cols=185  Identities=52%  Similarity=0.881  Sum_probs=164.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      |||++|     .+-.+||+|+||+.+.+.+..|..+.+++|||+|+++|++..+.||+++-+++++||.+|++||+++..
T Consensus        23 sll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~  102 (213)
T KOG0091|consen   23 SLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVEN  102 (213)
T ss_pred             HHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHH
Confidence            566666     666799999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            78 WMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        78 ~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      |+++...+.. +..+.++|||+|.||..   .++|+.+++..+++.+|+.|+|+||++|.||++.|..+.+.+...+.++
T Consensus       103 w~~ea~m~~q~P~k~VFlLVGhKsDL~S---qRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qG  179 (213)
T KOG0091|consen  103 WVKEAAMATQGPDKVVFLLVGHKSDLQS---QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQG  179 (213)
T ss_pred             HHHHHHHhcCCCCeeEEEEeccccchhh---hccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcC
Confidence            9999998887 66778889999999987   7999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38           157 DYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC  193 (193)
Q Consensus       157 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc  193 (193)
                      +...+..+-++|+.....  .--... ...|.|.-||
T Consensus       180 eik~edgw~gvKSsrpn~--i~~s~~-~~~P~k~c~C  213 (213)
T KOG0091|consen  180 EIKLEDGWGGVKSSRPNQ--IPRSPS-RKQPSKPCQC  213 (213)
T ss_pred             ceeeeeccccccccCCCc--CCCccc-ccCCCCCCCC
Confidence            999999999999944222  111111 3345666667

>KOG0098|consensus

Probab=100.00  E-value=1.3e-37  Score=219.76  Aligned_cols=159  Identities=47%  Similarity=0.794  Sum_probs=148.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      |||.||     .+.+..|+|++|..+.+.+ ++++++|++|||+|++.|++..+.||+++.++|+|||++.++||+.+..
T Consensus        21 clllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~   99 (216)
T KOG0098|consen   21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTS   99 (216)
T ss_pred             HHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence            566666     7788899999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+.++.++. ..+..|+|+|||+||..   .+.|+.+++..||+++++.++++||+++.||+|+|..+...|++..+.+-
T Consensus       100 wL~D~rq~~-~~NmvImLiGNKsDL~~---rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~  175 (216)
T KOG0098|consen  100 WLEDARQHS-NENMVIMLIGNKSDLEA---RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGV  175 (216)
T ss_pred             HHHHHHHhc-CCCcEEEEEcchhhhhc---cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            999999986 45678889999999988   68999999999999999999999999999999999999999999999988


Q ss_pred             ccccCCccc
Q psy38           158 YKVEDGWEG  166 (193)
Q Consensus       158 ~~~~~~~~~  166 (193)
                      ......+++
T Consensus       176 ~~~~~~~k~  184 (216)
T KOG0098|consen  176 FDDINESKG  184 (216)
T ss_pred             ccccccccc
Confidence            777766665

>KOG0078|consensus

Probab=100.00  E-value=2e-36  Score=218.73  Aligned_cols=154  Identities=41%  Similarity=0.715  Sum_probs=143.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||.||     ...|..|+|+||..+++.+ +|+.+.+++|||+||++|+.+...||++++++++|||+++..||+++.
T Consensus        26 t~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~  104 (207)
T KOG0078|consen   26 TCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIR  104 (207)
T ss_pred             hHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH
Confidence            4788888     7889999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..|.++. +..+|++|||||+|+..   .+.|+.+.+..+|.++|+.++|+||++|.||++.|..+++.++.+....
T Consensus       105 ~W~~~I~e~a-~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  105 NWIKNIDEHA-SDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhC-CCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence            9999999986 55789999999999988   6999999999999999999999999999999999999999999977666


Q ss_pred             Cccc
Q psy38           157 DYKV  160 (193)
Q Consensus       157 ~~~~  160 (193)
                      +.+.
T Consensus       181 ~~~~  184 (207)
T KOG0078|consen  181 ELEA  184 (207)
T ss_pred             hhcc
Confidence            4433

>KOG0086|consensus

Probab=100.00  E-value=5e-36  Score=205.49  Aligned_cols=185  Identities=41%  Similarity=0.643  Sum_probs=169.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      |||+||     .+....|+|++|..+++.+ +|+.+.+++|||+|+++|++..+.||+++-++++|||+++++||+.+..
T Consensus        24 CLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtn  102 (214)
T KOG0086|consen   24 CLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTN  102 (214)
T ss_pred             HHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHH
Confidence            788888     7788999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+.++.... +.++-++++|||.||..   .++++..++-.|+++..+.++|+||.+|+||+|.|-..++.|+.+.+.++
T Consensus       103 WL~DaR~lA-s~nIvviL~GnKkDL~~---~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  103 WLTDARTLA-SPNIVVILCGNKKDLDP---EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGE  178 (214)
T ss_pred             HHHHHHhhC-CCcEEEEEeCChhhcCh---hhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcC
Confidence            999999875 66788889999999988   59999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccccccCCCCCcCccCchh-hhcCCCCCCC
Q psy38           158 YKVEDGWEGIKTGFSRTNAVLDDDL-MLAEPAKSSC  192 (193)
Q Consensus       158 ~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~c  192 (193)
                      ..+++..+++-.++..-+.+..+.+ +...++..+|
T Consensus       179 lDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C  214 (214)
T KOG0086|consen  179 LDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC  214 (214)
T ss_pred             CCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence            9999999999999988877777664 2333444444

>KOG0079|consensus

Probab=100.00  E-value=3.6e-35  Score=200.14  Aligned_cols=145  Identities=41%  Similarity=0.652  Sum_probs=137.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+.||     ...|..|+|+||..+++++ +|..+.++||||+|+++|+.+...||++.+++|+|||+++.+||.++.+
T Consensus        23 sLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~r  101 (198)
T KOG0079|consen   23 SLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKR  101 (198)
T ss_pred             HHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHH
Confidence            567777     7789999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |++++.+.+.  ..|-++||||.|+.+   .+.+..++++.||..+|+.+||+||+.+.|++..|.-|.++.+...
T Consensus       102 WLeei~~ncd--sv~~vLVGNK~d~~~---RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  102 WLEEIRNNCD--SVPKVLVGNKNDDPE---RRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             HHHHHHhcCc--cccceecccCCCCcc---ceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence            9999999875  577789999999988   6889999999999999999999999999999999999999999877

>KOG0087|consensus

Probab=100.00  E-value=2.3e-34  Score=207.34  Aligned_cols=152  Identities=45%  Similarity=0.710  Sum_probs=140.7

Q ss_pred             eeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             4 LLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         4 ll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||-||     ..+..+|||++|.++.+.+ +|+.+..+||||+||++|+.....||+++.++++|||++...+|+.+.+|
T Consensus        30 LlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rW  108 (222)
T KOG0087|consen   30 LLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERW  108 (222)
T ss_pred             HHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHH
Confidence            45566     6688899999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCCc
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDY  158 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~~  158 (193)
                      +.+++.+. ..+++|+|||||+||..   .+.|+.++++.+|...+..++++||.++.||+++|..++..|+...-++..
T Consensus       109 L~ELRdha-d~nivimLvGNK~DL~~---lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~  184 (222)
T KOG0087|consen  109 LKELRDHA-DSNIVIMLVGNKSDLNH---LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQL  184 (222)
T ss_pred             HHHHHhcC-CCCeEEEEeecchhhhh---ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence            99999986 55799999999999988   688999999999999999999999999999999999999999998766544


Q ss_pred             cc
Q psy38           159 KV  160 (193)
Q Consensus       159 ~~  160 (193)
                      ..
T Consensus       185 ~~  186 (222)
T KOG0087|consen  185 DE  186 (222)
T ss_pred             hc
Confidence            43

>KOG0394|consensus

Probab=100.00  E-value=7.9e-35  Score=205.29  Aligned_cols=152  Identities=33%  Similarity=0.579  Sum_probs=139.9

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+|||     ...|..|||.||.++.+.+ +++.+.+++|||+|+++|+++.-.+|+++|+++++||++++.||+.+.
T Consensus        23 tSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~  101 (210)
T KOG0394|consen   23 TSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE  101 (210)
T ss_pred             HHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHH
Confidence            5788888     8899999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|.+++..+..   +...|+||+|||+|+.+. ..+.++...++++|+..| ++|||+||+.+.||++.|..+++.++..
T Consensus       102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~-~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGG-KSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALAN  180 (210)
T ss_pred             HHHHHHHHhcCCCCCCcccEEEEcccccCCCC-ccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhc
Confidence            99999998876   457899999999999652 138899999999998865 7999999999999999999999999987


Q ss_pred             hcC
Q psy38           153 VQS  155 (193)
Q Consensus       153 ~~~  155 (193)
                      ...
T Consensus       181 E~~  183 (210)
T KOG0394|consen  181 EDR  183 (210)
T ss_pred             cch
Confidence            643

>KOG0080|consensus

Probab=100.00  E-value=2.1e-34  Score=198.88  Aligned_cols=147  Identities=37%  Similarity=0.632  Sum_probs=136.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      |||.||     ++....|||+||..+.+.+ +|+.+.+-+|||+|+++|+.+.+.||+++.++|+|||++.+++|..+..
T Consensus        26 SLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~  104 (209)
T KOG0080|consen   26 SLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDI  104 (209)
T ss_pred             HHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHH
Confidence            567777     5556666999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |++++..+...++...++||||+|.++   .+.|+.+++..||+++++.++||||++.+||...|+.++..|++-.
T Consensus       105 W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  105 WLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             HHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence            999999999877888889999999876   5899999999999999999999999999999999999999998743

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.5e-33  Score=208.47  Aligned_cols=183  Identities=32%  Similarity=0.563  Sum_probs=147.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||+|.++..+.+.+ +|..+.+++|||+|+++|+.++..|++++|++|+|||+++++||+++.
T Consensus        14 TSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~   92 (202)
T cd04120          14 TSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP   92 (202)
T ss_pred             HHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence            4677777     5678999999999999999 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      .|+..+.... ....|+++||||+||..   .+.+..+++.+++++. ++.|++|||++|.||+++|.++++.+......
T Consensus        93 ~w~~~i~~~~-~~~~piilVgNK~DL~~---~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~  168 (202)
T cd04120          93 KWMKMIDKYA-SEDAELLLVGNKLDCET---DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL  168 (202)
T ss_pred             HHHHHHHHhC-CCCCcEEEEEECccccc---ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCcc
Confidence            9999887653 45689999999999976   4778899999999885 78999999999999999999999988775332


Q ss_pred             CCccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38           156 GDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC  193 (193)
Q Consensus       156 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc  193 (193)
                       +....+-..++-+-+..|..+-.--+   +.---.||
T Consensus       169 -~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  202 (202)
T cd04120         169 -DILRNELSNSILSLQPEPEIPPELPP---PRPHVRCC  202 (202)
T ss_pred             -ccccccccchhhccCCCCCCCcCCCC---CCCCcccC
Confidence             34444444444444455544332222   23345677

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0097|consensus

Probab=100.00  E-value=8.1e-34  Score=192.54  Aligned_cols=184  Identities=39%  Similarity=0.724  Sum_probs=165.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      |||++|     ..+...|+|++|.++++.+ .|.++.+++|||+|+++|+...+.||+++.+.++|||++.+.+++.+..
T Consensus        26 cllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlss  104 (215)
T KOG0097|consen   26 CLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS  104 (215)
T ss_pred             HHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHH
Confidence            788888     6788999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+.+.....++ +..|+++|||.||+.   .+.++.+++++|+.+.|+-++++||++|.||++.|....++|+++.+++.
T Consensus       105 wl~dar~ltnp-nt~i~lignkadle~---qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgs  180 (215)
T KOG0097|consen  105 WLTDARNLTNP-NTVIFLIGNKADLES---QRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGS  180 (215)
T ss_pred             HHhhhhccCCC-ceEEEEecchhhhhh---cccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCc
Confidence            99999887654 566679999999988   69999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccccccCCCCCcCccCchhhhcCCCCCCC-C
Q psy38           158 YKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSC-C  193 (193)
Q Consensus       158 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~c-c  193 (193)
                      .......+++..+...|...+..+  -..+++.+| |
T Consensus       181 ldlnaaesgvq~k~~~p~~~~l~s--e~~~~kd~c~c  215 (215)
T KOG0097|consen  181 LDLNAAESGVQHKPSQPSRTSLSS--EATGAKDQCSC  215 (215)
T ss_pred             ccccchhccCcCCCCCCCcccccc--CCCCccccCCC
Confidence            999999999888887775544333  123456667 5

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.6e-33  Score=205.18  Aligned_cols=156  Identities=34%  Similarity=0.536  Sum_probs=139.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.||+|.++....+.+ ++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+.+.
T Consensus        20 Tsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~   98 (189)
T cd04121          20 GEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGID   98 (189)
T ss_pred             HHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence            3677777     5677889999998888888 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+.++....  ...|++|||||.||..   .+.++.+++..+++..+++|++|||++|.||+++|.++++.++....+.
T Consensus        99 ~w~~~i~~~~--~~~piilVGNK~DL~~---~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~  173 (189)
T cd04121          99 RWIKEIDEHA--PGVPKILVGNRLHLAF---KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRP  173 (189)
T ss_pred             HHHHHHHHhC--CCCCEEEEEECccchh---ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence            9999997764  4689999999999976   4678999999999999999999999999999999999999998877766


Q ss_pred             CccccCC
Q psy38           157 DYKVEDG  163 (193)
Q Consensus       157 ~~~~~~~  163 (193)
                      ..++.++
T Consensus       174 ~~~~~~~  180 (189)
T cd04121         174 PQSPPQN  180 (189)
T ss_pred             CCCCCcc
Confidence            5555443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.8e-32  Score=205.54  Aligned_cols=189  Identities=56%  Similarity=0.938  Sum_probs=167.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||+|.++..+.+.+.++..+.+++|||+|++.+..++..+++++|++|+|||+++++||+++.
T Consensus        16 TsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~   95 (211)
T cd04111          16 SSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVH   95 (211)
T ss_pred             HHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence            3567776     56688999999999888875678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+........+|+++||||.|+..   .+.+..+++..+++.++++++++||++|.||+++|++|++.+.+..+.+
T Consensus        96 ~~~~~i~~~~~~~~~~iilvgNK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~  172 (211)
T cd04111          96 DWLEEARSHIQPHRPVFILVGHKCDLES---QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG  172 (211)
T ss_pred             HHHHHHHHhcCCCCCeEEEEEEcccccc---ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence            9999998876566788999999999976   4678888899999999999999999999999999999999999999988


Q ss_pred             CccccCCccccccCCCCCcCccC--chhhhcCCCCCCCC
Q psy38           157 DYKVEDGWEGIKTGFSRTNAVLD--DDLMLAEPAKSSCC  193 (193)
Q Consensus       157 ~~~~~~~~~~~k~~~~~~~~~~~--~~~~~~~~~~~~cc  193 (193)
                      +.+....+.+++.++.+.+.-+.  +.+.-+.|+|+-||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         173 ELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             CCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            88999999999999977765554  44566788898888

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093|consensus

Probab=100.00  E-value=1.8e-33  Score=191.64  Aligned_cols=150  Identities=35%  Similarity=0.602  Sum_probs=139.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|++-||     ...|..|+|++|..+++-- +.+.+.+++|||+|+++|+.+...||++++++|+|||.+|.+||+.+.
T Consensus        35 TSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svq  113 (193)
T KOG0093|consen   35 TSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQ  113 (193)
T ss_pred             hhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHH
Confidence            4677777     6688999999999998877 778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|.-.|..+. ..+.|+|+||||+||.+   .+.++.+.++.++..+|+.|||+||+.+.||.++|..++..|.+++-+.
T Consensus       114 dw~tqIktys-w~naqvilvgnKCDmd~---eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  114 DWITQIKTYS-WDNAQVILVGNKCDMDS---ERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHheeee-ccCceEEEEecccCCcc---ceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence            9999999884 67899999999999988   6999999999999999999999999999999999999999999876543

>KOG0088|consensus

Probab=100.00  E-value=1.9e-33  Score=193.86  Aligned_cols=183  Identities=31%  Similarity=0.514  Sum_probs=150.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+-||     +....+|+-..|..+.+.+ ++....+++|||+|+++|..+.+.||++++++++|||++|++||+.+.
T Consensus        27 tSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVK  105 (218)
T KOG0088|consen   27 TSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVK  105 (218)
T ss_pred             hHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHH
Confidence            3566666     6667788877899999999 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|..++..... ..+-++|||||+||++   .+.|+.+++..++..-|..|+++||+++.||.|+|..+...+++...+.
T Consensus       106 nWV~Elr~mlG-nei~l~IVGNKiDLEe---eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~  181 (218)
T KOG0088|consen  106 NWVLELRTMLG-NEIELLIVGNKIDLEE---ERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR  181 (218)
T ss_pred             HHHHHHHHHhC-CeeEEEEecCcccHHH---hhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence            99999998764 4577889999999988   6999999999999999999999999999999999999999999876554


Q ss_pred             CccccCCccccccCCCC-CcCccCch-hhhcCCCCCCCC
Q psy38           157 DYKVEDGWEGIKTGFSR-TNAVLDDD-LMLAEPAKSSCC  193 (193)
Q Consensus       157 ~~~~~~~~~~~k~~~~~-~~~~~~~~-~~~~~~~~~~cc  193 (193)
                      +...    +...+.... .++....+ -++..+++++||
T Consensus       182 qr~~----~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC  216 (218)
T KOG0088|consen  182 QRTR----SPLSTQPPSTNRSIRLIDNEAEAERSGKRCC  216 (218)
T ss_pred             cccc----CCcCCCCCCcccchhccCCCcccccccCCcc
Confidence            3222    222222211 12333333 346777888899

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=7.4e-32  Score=203.94  Aligned_cols=186  Identities=19%  Similarity=0.240  Sum_probs=146.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +||++||     .++|.||++.++. ..+.+ ++..+.++||||+|++.|..+++.+|+++|++|+|||+++++||+.+ 
T Consensus        27 TsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~  104 (232)
T cd04174          27 TAMLQVLAKDCYPETYVPTVFENYT-AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL  104 (232)
T ss_pred             HHHHHHHhcCCCCCCcCCceeeeeE-EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence            3677776     6789999986664 56778 89999999999999999999999999999999999999999999985 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCc-CHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGF-QVENAFTA  144 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~e~f~~  144 (193)
                      ..|+..+....  +..|++|||||.||..+.         ..+.++.+++.++|++.++ .|+||||++|. ||+++|..
T Consensus       105 ~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~  182 (232)
T cd04174         105 KKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRS  182 (232)
T ss_pred             HHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence            78999998764  357899999999996421         1256899999999999998 69999999998 89999999


Q ss_pred             HHHHHHHHhcCCCccccCCccccccCCCCCcCccCchhhhcCCCCCCC
Q psy38           145 VTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSC  192 (193)
Q Consensus       145 i~~~i~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~c  192 (193)
                      ++..+++....... ....++..+.+...|+.........+..+.++|
T Consensus       183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (232)
T cd04174         183 ASLLCLNKLSPPIK-KSPVRSLSKRLLHLPSRSELISSTFKKEKAKSC  229 (232)
T ss_pred             HHHHHHHhcccccc-cccccccccccccCCCcccccccccccccCCcc
Confidence            99999876555322 222333344444445444444344556666677

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0083|consensus

Probab=100.00  E-value=1.3e-32  Score=184.85  Aligned_cols=146  Identities=39%  Similarity=0.667  Sum_probs=136.7

Q ss_pred             eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +|||-||      ...+.+|+|+||..+.+++ +++++.+++|||+||++|++....||+++|+++++||+++..||+++
T Consensus        11 tcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~   89 (192)
T KOG0083|consen   11 TCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNC   89 (192)
T ss_pred             eEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHH
Confidence            6899999      7789999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +.|+.+|.++... ...+.++|||+|+..   .+.+..+++..+++..++|++++||++|.||+-.|..|.+.+.+.
T Consensus        90 ~~wlsei~ey~k~-~v~l~llgnk~d~a~---er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~  162 (192)
T KOG0083|consen   90 QAWLSEIHEYAKE-AVALMLLGNKCDLAH---ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKL  162 (192)
T ss_pred             HHHHHHHHHHHHh-hHhHhhhccccccch---hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence            9999999999754 466679999999965   488999999999999999999999999999999999999988764

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.5e-31  Score=199.28  Aligned_cols=178  Identities=28%  Similarity=0.494  Sum_probs=144.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecC-CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||++||     ...|.||+|.++....+.+ + +..+.+.+|||+|+++|..+++.++++++++|+|||++++++|+.+
T Consensus        14 Tsli~~l~~~~~~~~~~~t~~~d~~~~~v~~-~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~   92 (201)
T cd04107          14 TSIIKRYVHGIFSQHYKATIGVDFALKVIEW-DPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAV   92 (201)
T ss_pred             HHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHH
Confidence            4677877     5678999999999888888 6 8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        76 ~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..|+..+.....   ....|++|||||.|+..   .+.+..+++.++++..+ ..|+++||++|.||+++|.++++.++.
T Consensus        93 ~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107          93 LKWKADLDSKVTLPNGEPIPCLLLANKCDLKK---RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHHHHHHhhcccCCCCCcEEEEEECCCccc---ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999998876432   35689999999999975   36678889999999988 599999999999999999999999987


Q ss_pred             HhcCCCccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38           152 RVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC  193 (193)
Q Consensus       152 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc  193 (193)
                      ..+...+......        .+.....+  .+.+.++.+||
T Consensus       170 ~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~  201 (201)
T cd04107         170 NDKNLQQAETPED--------GSVIDLKQ--TTTKKKSKGCC  201 (201)
T ss_pred             hchhhHhhcCCCc--------cccccccc--ceeccccCCCC
Confidence            6544433222111        12222222  35566777999

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095|consensus

Probab=100.00  E-value=2.9e-32  Score=186.39  Aligned_cols=152  Identities=38%  Similarity=0.654  Sum_probs=139.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+.||     .+....|||++|.-+++.+ +|.++.+++|||+|+++|++....||+.++++|++||++-.+||+-+.
T Consensus        21 tclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclp   99 (213)
T KOG0095|consen   21 TCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLP   99 (213)
T ss_pred             chhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhH
Confidence            6889998     7788889999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+.+|.++.......| +||||.|+.+   .++++...+.+|+......|+++||++..||+.+|..++-.+......+
T Consensus       100 ewlreie~yan~kvlki-lvgnk~d~~d---rrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~  175 (213)
T KOG0095|consen  100 EWLREIEQYANNKVLKI-LVGNKIDLAD---RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQN  175 (213)
T ss_pred             HHHHHHHHHhhcceEEE-eeccccchhh---hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999986655555 9999999987   5899999999999999999999999999999999999998888766555


Q ss_pred             Cc
Q psy38           157 DY  158 (193)
Q Consensus       157 ~~  158 (193)
                      ..
T Consensus       176 d~  177 (213)
T KOG0095|consen  176 DL  177 (213)
T ss_pred             cc
Confidence            44

>KOG0081|consensus

Probab=99.98  E-value=9.7e-32  Score=185.53  Aligned_cols=152  Identities=39%  Similarity=0.633  Sum_probs=140.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEec--------CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMR--------DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~--------~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   68 (193)
                      +|+|.||     ...+..|+|+||..+.+-+.        .+..+++++|||+|+++|+++...|++++-+++++||+++
T Consensus        23 Ts~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~  102 (219)
T KOG0081|consen   23 TSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTS  102 (219)
T ss_pred             eEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccc
Confidence            6889998     77889999999999988762        1357999999999999999999999999999999999999


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ..||-++++|+.++..+.--.++-|+++|||+||.+   .+.|+.+++.+++.+.++||||+||-+|.||++..+.++..
T Consensus       103 eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  103 EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---QRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---hhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence            999999999999999887667788999999999988   79999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q psy38           149 IYNRVQSG  156 (193)
Q Consensus       149 i~~~~~~~  156 (193)
                      +++++++.
T Consensus       180 vM~Rie~~  187 (219)
T KOG0081|consen  180 VMKRIEQC  187 (219)
T ss_pred             HHHHHHHH
Confidence            99988765

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=8.3e-31  Score=193.62  Aligned_cols=150  Identities=30%  Similarity=0.472  Sum_probs=129.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     .+.|.||++..+ ...+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+.
T Consensus        13 Tsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~   90 (190)
T cd04144          13 TALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVE   90 (190)
T ss_pred             HHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHH
Confidence            3677776     567899997444 455667 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      .|+..+.....  ....|+++||||+|+..   .+.+...++.+++...+++|+++||++|.|++++|.++++.+.....
T Consensus        91 ~~~~~i~~~~~~~~~~~piilvgNK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~  167 (190)
T cd04144          91 RFREQIQRVKDESAADVPIMIVGNKCDKVY---EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ  167 (190)
T ss_pred             HHHHHHHHHhcccCCCCCEEEEEEChhccc---cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999877643  25689999999999975   46678888888998889999999999999999999999998887666


Q ss_pred             CC
Q psy38           155 SG  156 (193)
Q Consensus       155 ~~  156 (193)
                      .+
T Consensus       168 ~~  169 (190)
T cd04144         168 GG  169 (190)
T ss_pred             cc
Confidence            65

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=3.5e-30  Score=187.84  Aligned_cols=141  Identities=36%  Similarity=0.608  Sum_probs=128.5

Q ss_pred             eeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38             6 YLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH   85 (193)
Q Consensus         6 ~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~   85 (193)
                      +.|.++|.||+|.++..+.+.+ ++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~-~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999998 889999999999999999999999999999999999999999999999999999876


Q ss_pred             cCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            86 IEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        86 ~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .. ...|++|||||+||.+   .+.+..+++..++...++.|++|||++|.||+++|.+|++.+.+
T Consensus        82 ~~-~~~piilVgNK~DL~~---~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         82 RG-KDVIIALVGNKTDLGD---LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cC-CCCeEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            43 4689999999999975   46688889999999889999999999999999999999998755

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=3.4e-30  Score=193.91  Aligned_cols=150  Identities=39%  Similarity=0.684  Sum_probs=134.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++||     ..++.||+|.++....+.+ ++..+.+++||++|++++..++..++++++++|+|||++++.+|+.+..
T Consensus        27 tLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~  105 (216)
T PLN03110         27 NILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR  105 (216)
T ss_pred             HHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence            567776     4578899999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+..+.... ..+.|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.+++..+........
T Consensus       106 ~~~~~~~~~-~~~~piiiv~nK~Dl~~---~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~  181 (216)
T PLN03110        106 WLRELRDHA-DSNIVIMMAGNKSDLNH---LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKA  181 (216)
T ss_pred             HHHHHHHhC-CCCCeEEEEEEChhccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            999988764 45689999999999976   46788888999999899999999999999999999999999988765443

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=3.3e-30  Score=191.76  Aligned_cols=175  Identities=35%  Similarity=0.549  Sum_probs=145.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||+|.++....+.+ +|..+.+.+||++|++.+..++..++++++++|+|||++++++|+.+.
T Consensus        20 Tsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~   98 (199)
T cd04110          20 SSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVK   98 (199)
T ss_pred             HHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHH
Confidence            3677777     4578999999998888888 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+....  ...|+++||||.|+..   ...+..+++..++...+++++++||++|.||+++|.+++..++......
T Consensus        99 ~~~~~i~~~~--~~~piivVgNK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~  173 (199)
T cd04110          99 RWLQEIEQNC--DDVCKVLVGNKNDDPE---RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHHhC--CCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence            9999987753  4578899999999976   4567788888999988999999999999999999999999998765544


Q ss_pred             CccccCCccccccCCCCCcCccCchhhhcCCCCCCCC
Q psy38           157 DYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSSCC  193 (193)
Q Consensus       157 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~cc  193 (193)
                      ..+....           ..+...+.++.++++++||
T Consensus       174 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         174 LAKQQQQ-----------QQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             CcccccC-----------CccccCccchhccccccCC
Confidence            3222211           2223344556678899999

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=1.2e-30  Score=191.31  Aligned_cols=145  Identities=26%  Similarity=0.375  Sum_probs=126.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +||++||     .++|.||++.++ .+.+.+ ++..+.+++|||+|+++|..+++.+++++|++|+|||++++.||+++ 
T Consensus        19 Tsli~~~~~~~f~~~~~pT~~~~~-~~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~   96 (182)
T cd04172          19 TALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL   96 (182)
T ss_pred             HHHHHHHHhCCCCCccCCceeeee-EEEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHH
Confidence            4677777     678999998555 567788 89999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTA  144 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~  144 (193)
                      ..|+..+....  +..|++|||||.||.++.         ..+.++.+++.++|++.++ +|+||||++|.| |+++|..
T Consensus        97 ~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~  174 (182)
T cd04172          97 KKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV  174 (182)
T ss_pred             HHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence            78999998864  358999999999996421         1346899999999999996 899999999998 9999999


Q ss_pred             HHHHHH
Q psy38           145 VTQEIY  150 (193)
Q Consensus       145 i~~~i~  150 (193)
                      +++.++
T Consensus       175 ~~~~~~  180 (182)
T cd04172         175 ATLACV  180 (182)
T ss_pred             HHHHHh
Confidence            998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=4.3e-30  Score=193.35  Aligned_cols=154  Identities=25%  Similarity=0.374  Sum_probs=128.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||++|     .++|.||++.++. ..+.+ ++..+.|.+|||+|++.|..+++.+|+++|++|+|||++++++|+.+.
T Consensus        15 TsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~   92 (222)
T cd04173          15 TALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVL   92 (222)
T ss_pred             HHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHH
Confidence            4677776     6689999986554 67778 899999999999999999999999999999999999999999999994


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTA  144 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~  144 (193)
                       .|...+....  .+.|++|||||+||..+.         ....++.+++..+++..++ .|+||||+++.+ |+++|..
T Consensus        93 ~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~  170 (222)
T cd04173          93 KKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHV  170 (222)
T ss_pred             HHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHH
Confidence             5777665543  468999999999996531         1124788999999999996 899999999885 9999999


Q ss_pred             HHHHHHHHhcCCCcc
Q psy38           145 VTQEIYNRVQSGDYK  159 (193)
Q Consensus       145 i~~~i~~~~~~~~~~  159 (193)
                      ++...+.+......+
T Consensus       171 ~~~~~~~~~~~~~~~  185 (222)
T cd04173         171 ATVASLGRGHRQLRR  185 (222)
T ss_pred             HHHHHHhccCCcccc
Confidence            999988766544333

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=1.9e-30  Score=189.23  Aligned_cols=145  Identities=30%  Similarity=0.440  Sum_probs=125.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +||+.||     .++|.||+|..+ .+.+.+ ++..+.+++|||+|+++|+.++..++++++++|+|||+++++||+.+ 
T Consensus        15 Tsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~   92 (176)
T cd04133          15 TCMLICYTSNKFPTDYIPTVFDNF-SANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVL   92 (176)
T ss_pred             HHHHHHHhcCCCCCCCCCcceeee-EEEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHH
Confidence            3567776     668999998655 556777 89999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ..|+..+....  .+.|++|||||.||.+..       ..+.++.+++..+++..++ .|+||||++|.||+++|..+++
T Consensus        93 ~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~  170 (176)
T cd04133          93 KKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK  170 (176)
T ss_pred             HHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence            68999998764  368999999999996521       1135889999999999998 6999999999999999999998


Q ss_pred             HHH
Q psy38           148 EIY  150 (193)
Q Consensus       148 ~i~  150 (193)
                      .+.
T Consensus       171 ~~~  173 (176)
T cd04133         171 VVL  173 (176)
T ss_pred             HHh
Confidence            763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=4.1e-30  Score=193.33  Aligned_cols=150  Identities=29%  Similarity=0.507  Sum_probs=125.9

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ..++.||+|.++.....     ..+.+.+|||+|++.|..++..+++++|++|+|||+++++||+++..
T Consensus        14 TSLi~r~~~~~f~~~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~   88 (220)
T cd04126          14 TSLLHRYMERRFKDTVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELED   88 (220)
T ss_pred             HHHHHHHhcCCCCCCCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            3677787    34578999877665432     35789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCC----------------CCCccCHHHHHHHHHhCC--------------CcE
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSG----------------VPREVSEAEAKAFASQND--------------ILH  127 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~~~~v~~~~~~~~~~~~~--------------~~~  127 (193)
                      |+..+.... ....|++|||||.||.++.                ..+.++.+++..++++.+              ++|
T Consensus        89 ~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~  167 (220)
T cd04126          89 RFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC  167 (220)
T ss_pred             HHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceE
Confidence            888887653 4468999999999996511                147789999999999876              689


Q ss_pred             EEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38           128 FETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus       128 ~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      +||||++|.||+++|..+++.++....+..
T Consensus       168 ~E~SA~tg~~V~elf~~i~~~~~~~~~~~~  197 (220)
T cd04126         168 FETSAKTGYNVDELFEYLFNLVLPLILAQR  197 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999988766553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=5.6e-30  Score=192.69  Aligned_cols=148  Identities=28%  Similarity=0.481  Sum_probs=132.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||+|.+++.+.+.++++..+.+++|||+|++.+..++..+++++|++|+|||+++++||+.+.
T Consensus        14 SsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~   93 (215)
T cd04109          14 TSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLE   93 (215)
T ss_pred             HHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence            3677777     57899999999999988884456899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+.....  ...+|+++||||.|+.+   .+.+..+++..+++..+++++++||++|.||+++|++++..+...
T Consensus        94 ~w~~~l~~~~~~~~~~~piilVgNK~DL~~---~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109          94 DWYSMVRKVLKSSETQPLVVLVGNKTDLEH---NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHhccccCCCceEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            99999988754  24578999999999975   467888899999999999999999999999999999999998875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01875 RhoG RhoG subfamily

Probab=99.97  E-value=4.4e-30  Score=189.94  Aligned_cols=146  Identities=27%  Similarity=0.404  Sum_probs=124.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||+|.++ ...+.+ ++..+.+++|||+|+++|+.+++.+++++|++|+|||+++++||+++.
T Consensus        17 Tsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~   94 (191)
T cd01875          17 TCLLICYTTNAFPKEYIPTVFDNY-SAQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVR   94 (191)
T ss_pred             HHHHHHHHhCCCCcCCCCceEeee-EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHH
Confidence            4677777     578999998554 455677 889999999999999999999999999999999999999999999996


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                       .|+..+....  ...|++|||||.||.+...         .+.++.+++.++++..+ ++|++|||++|.||+++|.++
T Consensus        95 ~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l  172 (191)
T cd01875          95 HKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEA  172 (191)
T ss_pred             HHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHH
Confidence             5988887653  3689999999999965311         13477889999999988 599999999999999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      ++.++.
T Consensus       173 ~~~~~~  178 (191)
T cd01875         173 VRAVLN  178 (191)
T ss_pred             HHHHhc
Confidence            998865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=6.4e-30  Score=188.75  Aligned_cols=150  Identities=33%  Similarity=0.473  Sum_probs=130.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ...|.||++.++ .+.+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++++|+.+.
T Consensus        19 TsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~   96 (189)
T PTZ00369         19 SALTIQFIQNHFIDEYDPTIEDSY-RKQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIA   96 (189)
T ss_pred             HHHHHHHhcCCCCcCcCCchhhEE-EEEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence            3677777     567889998555 567777 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.......+.|+++|+||.|+.+   .+.+...++..++...+++++++||++|.||+++|.++++.+.+..++.
T Consensus        97 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~---~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~  173 (189)
T PTZ00369         97 SFREQILRVKDKDRVPMILVGNKCDLDS---ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKED  173 (189)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccccc---ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            9999998776556789999999999965   3567788888888888899999999999999999999999988765544

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=8.9e-30  Score=185.32  Aligned_cols=148  Identities=26%  Similarity=0.407  Sum_probs=129.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++..+ ...+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+.
T Consensus        16 TsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~   93 (172)
T cd04141          16 SAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEAS   93 (172)
T ss_pred             HHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHH
Confidence            3677777     567889998444 556777 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      .|+..+.........|+++||||.|+.+   .+.++.+++.++++.++++|++|||++|.||+++|+++++.+.+...
T Consensus        94 ~~~~~i~~~~~~~~~piilvgNK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  168 (172)
T cd04141          94 EFKKLITRVRLTEDIPLVLVGNKVDLES---QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKES  168 (172)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEEChhhhh---cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence            9988887765455789999999999976   46788999999999999999999999999999999999998887443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=1.1e-29  Score=188.60  Aligned_cols=143  Identities=23%  Similarity=0.492  Sum_probs=126.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||+|.++....+.+ ++..+.++||||+|+++|..++..+|+++|++|+|||++++.||+.+.
T Consensus         9 TsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~   87 (200)
T smart00176        9 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVP   87 (200)
T ss_pred             HHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHH
Confidence            4677777     5678999999999999888 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+....  ...|++|||||+|+..    +.+..+. ..++...++.|++|||++|.||.++|.+++..+.+.
T Consensus        88 ~w~~~i~~~~--~~~piilvgNK~Dl~~----~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       88 NWHRDLVRVC--ENIPIVLCGNKVDVKD----RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhC--CCCCEEEEEECccccc----ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999998864  3689999999999864    3344443 478888899999999999999999999999998764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=7.4e-30  Score=186.63  Aligned_cols=145  Identities=26%  Similarity=0.400  Sum_probs=125.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +||++||     ..+|.||++.++ .+.+.+ ++..+.+++|||+|++.|..+++.+++++|++|+|||+++++||+++ 
T Consensus        15 Tsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~   92 (178)
T cd04131          15 TALLQVFAKDCYPETYVPTVFENY-TASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVL   92 (178)
T ss_pred             HHHHHHHHhCcCCCCcCCceEEEE-EEEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHH
Confidence            4677777     678999998665 467788 88999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTA  144 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~  144 (193)
                      ..|+..+....  +..|++|||||.||.++.         ..+.++.+++.+++++.++ +|+||||++|.| |+++|..
T Consensus        93 ~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~  170 (178)
T cd04131          93 KKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV  170 (178)
T ss_pred             HHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence            78999998864  368999999999996421         1246899999999999997 899999999995 9999999


Q ss_pred             HHHHHH
Q psy38           145 VTQEIY  150 (193)
Q Consensus       145 i~~~i~  150 (193)
                      +++..+
T Consensus       171 ~~~~~~  176 (178)
T cd04131         171 ATMACL  176 (178)
T ss_pred             HHHHHh
Confidence            999655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=3.2e-29  Score=185.30  Aligned_cols=147  Identities=43%  Similarity=0.698  Sum_probs=130.2

Q ss_pred             eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||++||      ...+.||++.++....+.+ ++..+.+.||||+|++++..++..+++++|++|+|||++++++|+++
T Consensus        14 TSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~   92 (191)
T cd04112          14 TCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNI   92 (191)
T ss_pred             HHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHH
Confidence            3677776      2468899998998888888 88899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      ..|+..+.... ....|+++|+||.|+..   .+.+..+++..++...+++|+++||++|.|++++|.+|++.+....
T Consensus        93 ~~~~~~i~~~~-~~~~piiiv~NK~Dl~~---~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112          93 RAWLTEIKEYA-QEDVVIMLLGNKADMSG---ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             HHHHHHHHHhC-CCCCcEEEEEEcccchh---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999998864 44689999999999965   3667778888999989999999999999999999999999987763

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=8.3e-29  Score=185.65  Aligned_cols=184  Identities=41%  Similarity=0.713  Sum_probs=148.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus        21 tLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~   99 (210)
T PLN03108         21 CLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS   99 (210)
T ss_pred             HHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence            567776     4568899999998888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+..+.... ....|+++|+||.|+..   .+.++.+++.++++.++++++++||+++.||+++|.++++.++++..+..
T Consensus       100 ~~~~~~~~~-~~~~piiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~  175 (210)
T PLN03108        100 WLEDARQHA-NANMTIMLIGNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGV  175 (210)
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccCcc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            999887654 35689999999999976   46688899999999999999999999999999999999999998776554


Q ss_pred             ccccCCccccccC-CCCCcCccCchhhhcCCCCCCCC
Q psy38           158 YKVEDGWEGIKTG-FSRTNAVLDDDLMLAEPAKSSCC  193 (193)
Q Consensus       158 ~~~~~~~~~~k~~-~~~~~~~~~~~~~~~~~~~~~cc  193 (193)
                      ........++... +.-|.+-.-++  ....|.++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  210 (210)
T PLN03108        176 FDVSNESYGIKVGYGAIPGASGGRD--GTSSQGGGCC  210 (210)
T ss_pred             ccccccccccccccCCCCCCCCCcc--ccccCCCCCC
Confidence            4333333333322 23333333333  2345789999

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=3.3e-29  Score=181.07  Aligned_cols=145  Identities=43%  Similarity=0.789  Sum_probs=130.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||+|.++..+.+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++++|+.+.
T Consensus        16 Tsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   94 (166)
T cd04122          16 SCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS   94 (166)
T ss_pred             HHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH
Confidence            3567776     5678899999998888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.... ....|+++||||+|+..   .+.++.+++.++++..++++++|||++|.|++++|.++++.+.+
T Consensus        95 ~~~~~~~~~~-~~~~~iiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122          95 SWLTDARNLT-NPNTVIFLIGNKADLEA---QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHhC-CCCCeEEEEEECccccc---ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            9999987754 34689999999999976   46688889999999999999999999999999999999988765

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=1.1e-28  Score=182.01  Aligned_cols=151  Identities=38%  Similarity=0.639  Sum_probs=133.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||+|.++....+.+ ++..+.+++||++|++.+..++..+++++|++|+|||++++++|..+.
T Consensus        14 Ssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~   92 (188)
T cd04125          14 SSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLK   92 (188)
T ss_pred             HHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHH
Confidence            3677777     4458999998898888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.... ....|+++||||.|+.+   .+.+..+.+..++...+++++++||++|.|++++|.++++.+..+....
T Consensus        93 ~~~~~i~~~~-~~~~~~ivv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~  168 (188)
T cd04125          93 FWINEINRYA-RENVIKVIVANKSDLVN---NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQ  168 (188)
T ss_pred             HHHHHHHHhC-CCCCeEEEEEECCCCcc---cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence            9999998764 34588999999999976   3667888888999888999999999999999999999999998766555


Q ss_pred             C
Q psy38           157 D  157 (193)
Q Consensus       157 ~  157 (193)
                      +
T Consensus       169 ~  169 (188)
T cd04125         169 E  169 (188)
T ss_pred             c
Confidence            3

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=8.8e-29  Score=177.91  Aligned_cols=143  Identities=35%  Similarity=0.617  Sum_probs=133.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     .+.|.||+|.++....+.+ ++..+.+++||++|+++|..++..+++++|++|+|||+++++||+.+..
T Consensus        14 sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~   92 (162)
T PF00071_consen   14 SLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKK   92 (162)
T ss_dssp             HHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHH
T ss_pred             HHHHHHHhhccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            566666     7789999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+..+..... ..+|+++||||.|+.+   .+.++.+++++++++++++|++|||+++.||.++|..+++.+.
T Consensus        93 ~~~~i~~~~~-~~~~iivvg~K~D~~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen   93 WLEEIQKYKP-EDIPIIVVGNKSDLSD---EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHST-TTSEEEEEEETTTGGG---GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             cccccccccc-ccccceeeeccccccc---cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999998865 5689999999999976   5789999999999999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=8.8e-29  Score=180.99  Aligned_cols=147  Identities=42%  Similarity=0.673  Sum_probs=130.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecC---------CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRD---------GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~---------~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+++|     ...|.||+|.++....+.+..         +..+.+++|||+|+++|..++..+++++|++|+|||+++
T Consensus        19 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   98 (180)
T cd04127          19 SFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN   98 (180)
T ss_pred             HHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence            567776     678899999999888777621         467899999999999999999999999999999999999


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ++||.++..|+..+.......++|+++||||.|+.+   .+.++.+++.+++...+++++++||++|.|++++|+++++.
T Consensus        99 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~  175 (180)
T cd04127          99 EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED---QRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDL  175 (180)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh---cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999998765455789999999999976   36678888999999999999999999999999999999998


Q ss_pred             HHHH
Q psy38           149 IYNR  152 (193)
Q Consensus       149 i~~~  152 (193)
                      ++++
T Consensus       176 ~~~~  179 (180)
T cd04127         176 VMKR  179 (180)
T ss_pred             HHhh
Confidence            8764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04128 Spg1 Spg1p

Probab=99.96  E-value=9.8e-29  Score=181.34  Aligned_cols=147  Identities=22%  Similarity=0.415  Sum_probs=125.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||+|.++..+.+.+ ++..+.+++||++|+++|..++..+++++|++++|||+++++||+++.
T Consensus        14 TsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~   92 (182)
T cd04128          14 TSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIK   92 (182)
T ss_pred             HHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHH
Confidence            4677777     5679999999999888998 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC--CCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV--PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.... ....|+ +||||+|+..+..  ......+++.++++.+++++++|||++|.|++++|.++++.+.+
T Consensus        93 ~~~~~~~~~~-~~~~pi-lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128          93 EWYRQARGFN-KTAIPI-LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHhC-CCCCEE-EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999998764 345675 8899999953211  11122467788999999999999999999999999999998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=1.5e-28  Score=176.89  Aligned_cols=142  Identities=36%  Similarity=0.634  Sum_probs=127.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     .+.|.||+|.++....+.+ ++..+.+++||++|++++..++..+++++|++++|||+++++||+.+.
T Consensus        14 Tsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~   92 (161)
T cd04117          14 TCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIM   92 (161)
T ss_pred             HHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence            3567666     5678999999998888888 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .|+..+.... ....|+++||||.|+.+   .+.+..+++..+++..+++|++|||++|.||+++|.+|++.
T Consensus        93 ~~~~~~~~~~-~~~~~iilvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          93 KWVSDVDEYA-PEGVQKILIGNKADEEQ---KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             HHHHHHHHhC-CCCCeEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            9999998764 45689999999999976   47788899999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=2.4e-28  Score=177.48  Aligned_cols=148  Identities=32%  Similarity=0.519  Sum_probs=128.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||++.++..+.+.+ +|..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+.
T Consensus        14 Tsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~   92 (170)
T cd04108          14 TCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTR   92 (170)
T ss_pred             HHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence            3677777     6688999999998888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.....+..+|+++||||.|+.... ...+..+++..++.+++.+|+++||++|.|++++|..++..+.+
T Consensus        93 ~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108          93 QWLEDALKENDPSSVLLFLVGTKKDLSSPA-QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHhcCCCCCeEEEEEEChhcCccc-cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999876555668899999999985421 12345667778888888999999999999999999999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=3.1e-28  Score=177.69  Aligned_cols=144  Identities=25%  Similarity=0.367  Sum_probs=122.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++.++. ..+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++++|+.+.
T Consensus        15 Tsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~   92 (175)
T cd01874          15 TCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK   92 (175)
T ss_pred             HHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHH
Confidence            3567776     5789999986554 45677 888999999999999999999999999999999999999999999996


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                       .|+..+....  .+.|+++||||.|+..+.         ..+.++.+++.+++++.+ +.|++|||++|.|++++|+.+
T Consensus        93 ~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~  170 (175)
T cd01874          93 EKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA  170 (175)
T ss_pred             HHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence             5988887653  358999999999986531         125688899999998887 699999999999999999999


Q ss_pred             HHHH
Q psy38           146 TQEI  149 (193)
Q Consensus       146 ~~~i  149 (193)
                      +..+
T Consensus       171 ~~~~  174 (175)
T cd01874         171 ILAA  174 (175)
T ss_pred             HHHh
Confidence            8854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=1.3e-27  Score=176.79  Aligned_cols=150  Identities=31%  Similarity=0.565  Sum_probs=129.3

Q ss_pred             eeeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||+++|     . ..|.||+|.++..+.+.+ ++..+.+.+||++|++++..++..+++++|++++|||++++++|+.+
T Consensus        14 SsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~   92 (193)
T cd04118          14 TSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA   92 (193)
T ss_pred             HHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHH
Confidence            3677777     2 368899998888888999 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ..|+..+....  .+.|+++|+||.|+.... ..+.+...++.+++...+++++++||+++.|++++|+++++.+.++..
T Consensus        93 ~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  170 (193)
T cd04118          93 KFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999987752  368999999999985421 234566777888888888999999999999999999999999987554

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=4.8e-28  Score=182.58  Aligned_cols=143  Identities=24%  Similarity=0.512  Sum_probs=125.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ..+|.||+|.++....+.. ++..+.+.+|||+|+++|..++..++++++++|+|||++++++|+.+.
T Consensus        27 Tsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~  105 (219)
T PLN03071         27 TTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP  105 (219)
T ss_pred             HHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHH
Confidence            3667776     6689999999999888888 778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+....  ...|++|||||.|+..    +.+..++. +++...+++|++|||++|.||+++|.++++.+.+.
T Consensus       106 ~w~~~i~~~~--~~~piilvgNK~Dl~~----~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        106 TWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHhC--CCCcEEEEEEchhhhh----ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            9999998764  4689999999999964    33445555 77888889999999999999999999999988754

>cd04134 Rho3 Rho3 subfamily

Probab=99.96  E-value=5.1e-28  Score=178.57  Aligned_cols=146  Identities=29%  Similarity=0.453  Sum_probs=122.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ...|.||++.++. ..+.+ ++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+.
T Consensus        14 Tsli~~~~~~~~~~~~~~t~~~~~~-~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~   91 (189)
T cd04134          14 TSLLNVFTRGYFPQVYEPTVFENYV-HDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVE   91 (189)
T ss_pred             HHHHHHHhcCCCCCccCCcceeeeE-EEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHH
Confidence            3677777     5678999986554 55667 788899999999999999999999999999999999999999999996


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                       .|+..+....  ...|+++||||.||.....         ...+..+++..++...+ +.|++|||++|.||+++|.++
T Consensus        92 ~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l  169 (189)
T cd04134          92 SKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEA  169 (189)
T ss_pred             HHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHH
Confidence             5999988753  3689999999999965311         12467788888988877 689999999999999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      ++.++.
T Consensus       170 ~~~~~~  175 (189)
T cd04134         170 ARVALN  175 (189)
T ss_pred             HHHHhc
Confidence            998874

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=7.5e-28  Score=173.60  Aligned_cols=145  Identities=29%  Similarity=0.553  Sum_probs=130.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||+|.++..+.+.+ ++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+.+.
T Consensus        14 Tsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~   92 (168)
T cd04119          14 SCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALD   92 (168)
T ss_pred             HHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHH
Confidence            3677776     5688999999999888988 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC----CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEP----HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~----~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+......    ...|+++|+||+|+.+   ...+..+++..++...+++++++||++|.|++++|.+|++.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119          93 SWLKEMKQEGGPHGNMENIVVVVCANKIDLTK---HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHhccccccCCCceEEEEEEchhccc---ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999887653    5789999999999964   3567888888899888899999999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=8.5e-28  Score=173.92  Aligned_cols=144  Identities=43%  Similarity=0.697  Sum_probs=129.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     .+.|.||+|.++....+.+ ++..+.+++||++|++.+..++..+++++|++|+|||++++++|..+..
T Consensus        18 sl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~   96 (167)
T cd01867          18 CLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRN   96 (167)
T ss_pred             HHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence            567776     6688999999998888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.... ....|+++||||.|+.+   .+.+..+++..++..++++++++||++|.|++++|.++++.+..
T Consensus        97 ~~~~i~~~~-~~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867          97 WMRNIEEHA-SEDVERMLVGNKCDMEE---KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHhC-CCCCcEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999998763 45689999999999976   35678888889999999999999999999999999999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=4.9e-28  Score=174.05  Aligned_cols=143  Identities=32%  Similarity=0.502  Sum_probs=125.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++ +.+.+.+.+ ++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+.
T Consensus        15 Tsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   92 (163)
T cd04136          15 SALTVQFVQGIFVEKYDPTIE-DSYRKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQ   92 (163)
T ss_pred             HHHHHHHHhCCCCcccCCchh-hhEEEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence            3667776     567889986 666777888 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.......+.|+++|+||+|+..   .+.+..+++..+++.++++++++||++|.|++++|.++++.+
T Consensus        93 ~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136          93 DLREQILRVKDTENVPMVLVGNKCDLED---ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccccc---cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            9999998876556789999999999965   356777788888888889999999999999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=1.1e-27  Score=173.09  Aligned_cols=144  Identities=36%  Similarity=0.606  Sum_probs=127.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...|.||+|.++....+.. ++..+.+++|||+|++++..++..+++++|++++|||++++++|+.+..
T Consensus        16 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~   94 (165)
T cd01865          16 SFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD   94 (165)
T ss_pred             HHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHH
Confidence            677776     4678999998888888877 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.... ....|+++||||+|+.+   .+.+..+++.+++...+++++++||++|.|++++|++++..+.+
T Consensus        95 ~~~~i~~~~-~~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865          95 WSTQIKTYS-WDNAQVILVGNKCDMED---ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             HHHHHHHhC-CCCCCEEEEEECcccCc---ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999987654 44688999999999976   35677788888998889999999999999999999999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0393|consensus

Probab=99.96  E-value=7.9e-28  Score=174.65  Aligned_cols=150  Identities=29%  Similarity=0.384  Sum_probs=132.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +|||-.|     .++|.||+. |-+...+.+.+|+.+.+.+|||+|+++|.++++..|.++|+|++||++.+++||+++ 
T Consensus        18 T~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~   96 (198)
T KOG0393|consen   18 TCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVK   96 (198)
T ss_pred             eEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHH
Confidence            4566555     889999995 888888898239999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      .+|+.++..++  +..|+||||+|.||..+.         ....++.+++..++++.|. .|+||||+++.|+.++|+..
T Consensus        97 ~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a  174 (198)
T KOG0393|consen   97 SKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEA  174 (198)
T ss_pred             hhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHH
Confidence            56999999987  468999999999997532         1257889999999999995 89999999999999999999


Q ss_pred             HHHHHHHhc
Q psy38           146 TQEIYNRVQ  154 (193)
Q Consensus       146 ~~~i~~~~~  154 (193)
                      +..++...+
T Consensus       175 ~~~~l~~~~  183 (198)
T KOG0393|consen  175 IRAALRPPQ  183 (198)
T ss_pred             HHHHhcccc
Confidence            999988654

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=1e-27  Score=172.87  Aligned_cols=143  Identities=28%  Similarity=0.454  Sum_probs=125.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     .+.|.||++.. ....+.+ ++..+.+++|||+|++++..++..+++++|++++|||++++.+|+.+.
T Consensus        15 Tsli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~   92 (164)
T cd04175          15 SALTVQFVQGIFVEKYDPTIEDS-YRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQ   92 (164)
T ss_pred             HHHHHHHHhCCCCcccCCcchhe-EEEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence            3667776     56788999744 4567778 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.......+.|+++|+||+|+..   ...+..+++..+++..+++++++||++|.|++++|.++++.+
T Consensus        93 ~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175          93 DLREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECCcchh---ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9999998776566789999999999976   356777778888888899999999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=2.1e-27  Score=175.98  Aligned_cols=135  Identities=29%  Similarity=0.440  Sum_probs=112.6

Q ss_pred             cCCCCCccee-eEEEEEE--------EecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-HH
Q psy38             9 IQISDPTVGV-DFFARLV--------TMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-VW   78 (193)
Q Consensus         9 ~~~~~pt~~~-~~~~~~~--------~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~   78 (193)
                      .++|.||+|. +.+....        .+ +|..+.+++|||+|++.  .+...+|+++|++|+|||++++.||+++. .|
T Consensus        34 ~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w  110 (195)
T cd01873          34 LATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMW  110 (195)
T ss_pred             ccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHH
Confidence            4678999973 4333322        46 88999999999999976  35677999999999999999999999996 59


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCC----------------CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSG----------------VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAF  142 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f  142 (193)
                      +..+....  ...|+++||||+||....                ..+.++.+++.+++++.+++|+||||++|.||+++|
T Consensus       111 ~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F  188 (195)
T cd01873         111 YPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVF  188 (195)
T ss_pred             HHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHH
Confidence            99887764  357999999999996420                136789999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy38           143 TAVTQE  148 (193)
Q Consensus       143 ~~i~~~  148 (193)
                      ..+++.
T Consensus       189 ~~~~~~  194 (195)
T cd01873         189 DNAIRA  194 (195)
T ss_pred             HHHHHh
Confidence            999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=5.1e-27  Score=172.76  Aligned_cols=152  Identities=26%  Similarity=0.420  Sum_probs=126.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     .+.|.||++.++... +...++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+.
T Consensus        14 Tsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~   92 (187)
T cd04132          14 TCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVE   92 (187)
T ss_pred             HHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHH
Confidence            3667776     567889998776544 5552478899999999999999999999999999999999999999999995


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG-VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                       .|+..+....  .+.|+++||||.|+.... ..+.+...++.+++...++ +++++||++|.||+++|..+++.++...
T Consensus        93 ~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132          93 DKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             HHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence             5988877543  368999999999996531 2245778899999999988 9999999999999999999999998766


Q ss_pred             cCC
Q psy38           154 QSG  156 (193)
Q Consensus       154 ~~~  156 (193)
                      ...
T Consensus       171 ~~~  173 (187)
T cd04132         171 GKA  173 (187)
T ss_pred             hhh
Confidence            554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=2.5e-27  Score=172.73  Aligned_cols=142  Identities=29%  Similarity=0.405  Sum_probs=121.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+.||     .++|.||++ +.+...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||+++++||+++. 
T Consensus        16 sli~~~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~   93 (174)
T cd01871          16 CLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA   93 (174)
T ss_pred             HHHHHHhcCCCCCcCCCcce-eeeEEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence            566554     678999996 555666777 889999999999999999999999999999999999999999999995 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++||||.|+.+..         ..+.++.+++.+++++.+. ++++|||++|.|++++|+.++
T Consensus        94 ~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~  171 (174)
T cd01871          94 KWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI  171 (174)
T ss_pred             HHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence            6888887653  368999999999995421         1246889999999999885 999999999999999999998


Q ss_pred             HH
Q psy38           147 QE  148 (193)
Q Consensus       147 ~~  148 (193)
                      +.
T Consensus       172 ~~  173 (174)
T cd01871         172 RA  173 (174)
T ss_pred             Hh
Confidence            64

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=99.95  E-value=2.6e-27  Score=170.46  Aligned_cols=142  Identities=31%  Similarity=0.483  Sum_probs=124.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     .+.+.||++ +++...+.+ +|..+.+++|||+|+++|..++..+++++|++|+|||++++.+|+++..
T Consensus        16 sl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~   93 (163)
T cd04176          16 ALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKP   93 (163)
T ss_pred             HHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence            566665     567889986 777788888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.......+.|+++|+||.|+..   ...+...++..++...+++++++||+++.|++++|.++++.+
T Consensus        94 ~~~~~~~~~~~~~~piviv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176          94 MRDQIVRVKGYEKVPIILVGNKVDLES---EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             HHHHHHHhcCCCCCCEEEEEECccchh---cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            999998875556789999999999965   356677778888888889999999999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=4.1e-27  Score=170.02  Aligned_cols=144  Identities=43%  Similarity=0.680  Sum_probs=128.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++||     ...|.||++.++....+.+ ++..+.+++||++|++++..++..+++++|++|+|||+++++||..+..
T Consensus        17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~   95 (166)
T cd01869          17 CLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ   95 (166)
T ss_pred             HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHH
Confidence            566776     4578899999999898988 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.... ....|+++|+||.|+..   .+.+..+++..++...+++++++||++|.|++++|.++++.+.+
T Consensus        96 ~~~~~~~~~-~~~~~~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869          96 WLQEIDRYA-SENVNKLLVGNKCDLTD---KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHhC-CCCCcEEEEEEChhccc---ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            999998764 34689999999999976   35678888999999999999999999999999999999998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0395|consensus

Probab=99.95  E-value=1.3e-26  Score=171.23  Aligned_cols=148  Identities=35%  Similarity=0.474  Sum_probs=135.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +|+.||     .++|.||++ +.+.+.+.+ ++..+.+.|+||+|+++|..+...++.+++++++||+++++.||+.+..
T Consensus        18 al~~qf~~~~f~~~y~ptie-d~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~   95 (196)
T KOG0395|consen   18 ALTIQFLTGRFVEDYDPTIE-DSYRKELTV-DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQ   95 (196)
T ss_pred             hheeeecccccccccCCCcc-ccceEEEEE-CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHH
Confidence            455555     889999997 899999999 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      +++.|.........|+++||||+||..   .+.|+.+++..++..++++|+|+||+.+.+|+++|..+++.+......
T Consensus        96 l~~~I~r~~~~~~~PivlVGNK~Dl~~---~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~~  170 (196)
T KOG0395|consen   96 LREQILRVKGRDDVPIILVGNKCDLER---ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPREG  170 (196)
T ss_pred             HHHHHHHhhCcCCCCEEEEEEcccchh---ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhcc
Confidence            999997666667789999999999987   589999999999999999999999999999999999999998884443

>PLN03118 Rab family protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=173.29  Aligned_cols=147  Identities=39%  Similarity=0.642  Sum_probs=126.6

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|.++....+.+ ++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..
T Consensus        28 Tsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~  106 (211)
T PLN03118         28 SSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSD  106 (211)
T ss_pred             HHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            3566676    4688999998888888888 8888999999999999999999999999999999999999999999976


Q ss_pred             -HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            78 -WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        78 -~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                       |...+..+......|+++|+||.|+..   .+.+..+++..++...++.|+++||+++.|++++|.+|.+.+...
T Consensus       107 ~~~~~~~~~~~~~~~~~ilv~NK~Dl~~---~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        107 VWGKEVELYSTNQDCVKMLVGNKVDRES---ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccccc---cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence             666555444344678889999999976   356778888889988999999999999999999999999999764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=1.4e-26  Score=167.47  Aligned_cols=142  Identities=25%  Similarity=0.499  Sum_probs=123.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ...+.||++.++....+.. ++..+.+.+|||+|++++..++..++.++|++|+|||++++++|+.+.
T Consensus        14 Tsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   92 (166)
T cd00877          14 TTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVP   92 (166)
T ss_pred             HHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHH
Confidence            3677776     5578999999988888887 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.....  ..|+++||||.|+..    +.+.. +..+++...++.++++||++|.|++++|.+|++.+.+
T Consensus        93 ~~~~~i~~~~~--~~piiiv~nK~Dl~~----~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877          93 NWHRDLVRVCG--NIPIVLCGNKVDIKD----RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             HHHHHHHHhCC--CCcEEEEEEchhccc----ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            99999988754  689999999999964    23333 3456777778899999999999999999999998875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.95  E-value=1e-26  Score=168.81  Aligned_cols=143  Identities=42%  Similarity=0.704  Sum_probs=128.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-cchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+++||++|++++. .++..+++++|++|+|||++++.+|+.+.
T Consensus        17 sli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   95 (170)
T cd04115          17 CLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP   95 (170)
T ss_pred             HHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHH
Confidence            567776     5678999999999999998 8889999999999999886 57889999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC---CcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS---GFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.........|+++|+||.|+..   .+.++.+++.+++...+++|+++||++   +.+++++|.++++.+
T Consensus        96 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115          96 SWIEECEQHSLPNEVPRILVGNKCDLRE---QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccchh---hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            9999999876566799999999999976   467888889999999889999999999   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=1.7e-26  Score=166.57  Aligned_cols=142  Identities=48%  Similarity=0.749  Sum_probs=127.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.. ++..+.+++||++|++++..++..++++++++|+|||++++.+|+++..
T Consensus        18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   96 (165)
T cd01868          18 NLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVER   96 (165)
T ss_pred             HHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence            566776     5578899999999999988 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.... ..+.|+++|+||.|+..   .+.+..++...++...+++++++||++|.|++++|++++..+
T Consensus        97 ~~~~~~~~~-~~~~pi~vv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868          97 WLKELRDHA-DSNIVIMLVGNKSDLRH---LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHhC-CCCCeEEEEEECccccc---cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999998875 34689999999999976   366788888899988889999999999999999999998865

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04116 Rab9 Rab9 subfamily

Probab=99.95  E-value=1.3e-26  Score=167.93  Aligned_cols=141  Identities=35%  Similarity=0.570  Sum_probs=124.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     .+.+.||+|.++....+.+ ++..+.+++||++|++++..++..+++++|++|+|||++++++|+.+..
T Consensus        20 sli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   98 (170)
T cd04116          20 SLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSN   98 (170)
T ss_pred             HHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHH
Confidence            566666     5567889998888888888 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+.....   ....|+++|+||.|+..    +.+..+++.+++++++. +++++||++|.|+.++|.++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116          99 WKKEFIYYADVKEPESFPFVVLGNKNDIPE----RQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhcccccCCCCcEEEEEECccccc----cccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            9999887653   24689999999999864    56788889999998885 89999999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.95  E-value=2.4e-26  Score=164.74  Aligned_cols=142  Identities=34%  Similarity=0.478  Sum_probs=123.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||++. .+...+.+ ++..+.+.+|||+|++++..++..++++++++++|||++++.+|+++.
T Consensus        15 Tsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~   92 (162)
T cd04138          15 SALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIH   92 (162)
T ss_pred             HHHHHHHHhCCCcCCcCCcchh-eEEEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence            3677776     5678899874 44566677 888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.........|+++|+||.|+..    +.+...++.+++...+++++++||++|.|++++|.++++.+
T Consensus        93 ~~~~~i~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138          93 TYREQIKRVKDSDDVPMVLVGNKCDLAA----RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccccc----ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            9999998876556789999999999965    45677788888888899999999999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=3.4e-26  Score=165.70  Aligned_cols=144  Identities=49%  Similarity=0.824  Sum_probs=128.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+||++|++++..+...+++++|++++|||++++++|+.+..
T Consensus        19 sLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~   97 (168)
T cd01866          19 CLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS   97 (168)
T ss_pred             HHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            567777     4567889999998888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.... ....|+++|+||.|+..   .+.++.+++..++...++.++++||+++.|++++|.++++.+++
T Consensus        98 ~~~~~~~~~-~~~~pvivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866          98 WLEDARQHS-NSNMTIMLIGNKCDLES---RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHhC-CCCCcEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999998764 34689999999999975   35678888989999999999999999999999999999998764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.94  E-value=3.7e-26  Score=164.13  Aligned_cols=141  Identities=33%  Similarity=0.583  Sum_probs=124.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecC--CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRD--GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH   74 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~   74 (193)
                      +||+++|     .+.+.||++.++....+.+ +  +..+.+++|||+|+++|..++..+++++|++++|||++++++|+.
T Consensus        14 Tsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~   92 (162)
T cd04106          14 SSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEA   92 (162)
T ss_pred             HHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHH
Confidence            3677777     5578999999998888887 6  778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +..|+..+....  ...|+++|+||.|+..   ...+..+++..+++..+++++++||++|.|++++|.+|...
T Consensus        93 l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106          93 IESWKEKVEAEC--GDIPMVLVQTKIDLLD---QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHHHhC--CCCCEEEEEEChhccc---ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            999999987653  3588999999999966   35678888889999999999999999999999999999753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.94  E-value=3.5e-26  Score=164.69  Aligned_cols=144  Identities=35%  Similarity=0.494  Sum_probs=125.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||++ +.+...+.+ ++..+.+++|||+|++++..++..+++++|++++|||++++++|+.+.
T Consensus        14 Tsli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   91 (164)
T smart00173       14 SALTIQFVQGHFVDDYDPTIE-DSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIK   91 (164)
T ss_pred             HHHHHHHHhCcCCcccCCchh-hhEEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence            3667776     567888886 555667777 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+.........|+++||||+|+..   .+.+..+++..++...+++++++||++|.|++++|+++++.+.
T Consensus        92 ~~~~~i~~~~~~~~~pii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173       92 KFREQILRVKDRDDVPIVLVGNKCDLES---ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccccc---cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            9999988776555789999999999976   3557778888899888999999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.94  E-value=4.3e-26  Score=164.05  Aligned_cols=142  Identities=32%  Similarity=0.504  Sum_probs=123.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++ +.....+.+ ++..+.+++|||+|++++..++..+++++|++++|||++++.+|+.+..
T Consensus        17 sl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~   94 (164)
T cd04145          17 ALTIQFIQSYFVTDYDPTIE-DSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDK   94 (164)
T ss_pred             HHHHHHHhCCCCcccCCCcc-ceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence            566776     667889987 445566677 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.......+.|+++|+||+|+..   .+.+..+++.++++..+++++++||++|.|++++|+++++.+
T Consensus        95 ~~~~~~~~~~~~~~piiiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145          95 FHTQILRVKDRDEFPMILVGNKADLEH---QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             HHHHHHHHhCCCCCCEEEEeeCccccc---cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            999998765556789999999999976   355777788889988889999999999999999999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=2.7e-26  Score=166.85  Aligned_cols=146  Identities=29%  Similarity=0.400  Sum_probs=123.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||++. .+...+.+ ++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+.
T Consensus        12 Tsli~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~   89 (174)
T smart00174       12 TCLLISYTTNAFPEDYVPTVFE-NYSADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVK   89 (174)
T ss_pred             HHHHHHHHhCCCCCCCCCcEEe-eeeEEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHH
Confidence            3667776     5678899864 44556677 888999999999999999999999999999999999999999999995


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i  145 (193)
                       .|+..+....  ...|+++||||.|+..+.         ....++.+++.++++..+. .+++|||++|.||+++|..+
T Consensus        90 ~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l  167 (174)
T smart00174       90 EKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA  167 (174)
T ss_pred             HHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence             5999888753  368999999999996521         1234788899999999986 99999999999999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      ++.++.
T Consensus       168 ~~~~~~  173 (174)
T smart00174      168 IRAALN  173 (174)
T ss_pred             HHHhcC
Confidence            988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01864 Rab19 Rab19 subfamily

Probab=99.94  E-value=5.1e-26  Score=164.17  Aligned_cols=141  Identities=43%  Similarity=0.704  Sum_probs=124.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.+|.+.++..+.+.+ ++..+.+.+||++|++.+..++..+++++|++++|||++++.+|+.+..
T Consensus        18 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~   96 (165)
T cd01864          18 CVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH   96 (165)
T ss_pred             HHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHH
Confidence            566666     5678899988888888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+.... ....|+++|+||+|+.+   .+.+..+++.++++..+. .++++||++|.|++++|.++++.
T Consensus        97 ~~~~i~~~~-~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864          97 WIEEVEKYG-ASNVVLLLIGNKCDLEE---QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             HHHHHHHhC-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            999998753 45688999999999976   356788888899998876 78999999999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.94  E-value=4e-26  Score=163.89  Aligned_cols=138  Identities=22%  Similarity=0.353  Sum_probs=114.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.+.|+.+ ++ ...+.+ +|..+.+++|||+|++.     ..+++++|++++|||+++++||+++.
T Consensus        14 Tsli~~~~~~~f~~~~~~~~~-~~-~~~i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~   85 (158)
T cd04103          14 SALVHRYLTGSYVQLESPEGG-RF-KKEVLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVY   85 (158)
T ss_pred             HHHHHHHHhCCCCCCCCCCcc-ce-EEEEEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHH
Confidence            3667776     445666643 45 467888 88899999999999975     35778999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .|+..+.........|+++||||.|+... ..+.++.+++.+++++. ++.|++|||++|.||+++|..+++.
T Consensus        86 ~~~~~i~~~~~~~~~piilvgnK~Dl~~~-~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103          86 NLYHQLSSYRNISEIPLILVGTQDAISES-NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeeHHHhhhc-CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            99999988765567899999999998531 14678899999999876 4899999999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04113 Rab4 Rab4 subfamily

Probab=99.94  E-value=7.5e-26  Score=162.54  Aligned_cols=141  Identities=48%  Similarity=0.776  Sum_probs=126.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||++.++....+.+ ++..+.+++||++|+++|..++..+++++|++|+|||++++++|..+..
T Consensus        15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   93 (161)
T cd04113          15 CLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPT   93 (161)
T ss_pred             HHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence            567776     5677889998999888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+.... ..+.|+++|+||.|+..   .+.+..+++..++...++.++++||+++.|++++|.++++.
T Consensus        94 ~~~~~~~~~-~~~~~iivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          94 WLSDARALA-SPNIVVILVGNKSDLAD---QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             HHHHHHHhC-CCCCeEEEEEEchhcch---hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            999887664 45689999999999976   46688888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04140 ARHI_like ARHI subfamily

Probab=99.94  E-value=7e-26  Score=163.55  Aligned_cols=141  Identities=23%  Similarity=0.305  Sum_probs=120.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||++..+ ...+.. ++..+.+++|||+|++++..++..++++++++|+|||++++++|+.+.
T Consensus        15 Tsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   92 (165)
T cd04140          15 SSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELK   92 (165)
T ss_pred             HHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence            3677777     467889987444 555666 777899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .|+..+.....  ....|+++|+||.|+..   .+.+..+++..++...++.|++|||++|.|++++|++|+.
T Consensus        93 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140          93 PIYELICEIKGNNIEKIPIMLVGNKCDESH---KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEEECccccc---cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            99988877543  25689999999999965   3567788888899888899999999999999999999975

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=1.1e-25  Score=162.06  Aligned_cols=136  Identities=30%  Similarity=0.509  Sum_probs=120.4

Q ss_pred             cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC
Q psy38             9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP   88 (193)
Q Consensus         9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~   88 (193)
                      ..+|.||+|.++....+.+.++..+.+.+|||+|++.+..++..+++++|++++|||++++++|+.+..|+..+....  
T Consensus        28 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--  105 (164)
T cd04101          28 PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--  105 (164)
T ss_pred             CccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--
Confidence            568999999999888888845788999999999999999999999999999999999999999999999999988764  


Q ss_pred             CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ...|+++|+||.|+.+   ...+....+..++...+++++++||+++.|++++|..+++.+
T Consensus       106 ~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         106 KHMPGVLVGNKMDLAD---KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCCEEEEEECccccc---ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            4578999999999965   355777777778888889999999999999999999999864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.94  E-value=8.2e-26  Score=172.95  Aligned_cols=143  Identities=22%  Similarity=0.334  Sum_probs=123.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++ ++..+.+.+ ++..+.++||||+|++.|..++..++.++|++|+|||+++++||+++.
T Consensus        14 TSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~   91 (247)
T cd04143          14 TAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVC   91 (247)
T ss_pred             HHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence            4677777     557899997 888888888 899999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHhc--------CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            77 VWMMEAKRHI--------EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        77 ~~~~~i~~~~--------~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .|+.++....        .....|+++|+||+|+..   .+.+..+++.+++.. .++.++++||++|.||+++|.+|+.
T Consensus        92 ~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~---~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~  168 (247)
T cd04143          92 RLREQILETKSCLKNKTKENVKIPMVICGNKADRDF---PREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS  168 (247)
T ss_pred             HHHHHHHHhhcccccccccCCCCcEEEEEECccchh---ccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999997652        224689999999999975   356777888777764 4678999999999999999999998


Q ss_pred             HH
Q psy38           148 EI  149 (193)
Q Consensus       148 ~i  149 (193)
                      .+
T Consensus       169 ~~  170 (247)
T cd04143         169 LA  170 (247)
T ss_pred             Hh
Confidence            65

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=1.3e-25  Score=166.82  Aligned_cols=147  Identities=19%  Similarity=0.224  Sum_probs=120.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~   68 (193)
                      +||++||     ...|.||++.++....+.+ +|..+.+++|||+|.+.+...        ....++++|++|+|||+++
T Consensus        14 TsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~   92 (198)
T cd04142          14 TAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS   92 (198)
T ss_pred             HHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC
Confidence            3677777     5678999987877777778 888999999999997654321        2345789999999999999


Q ss_pred             hhHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      ++||+.+..|+..+.....  ....|+++||||.|+..   .+.+..+++..++. ..+++|++|||++|.||+++|..+
T Consensus        93 ~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i  169 (198)
T cd04142          93 PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR---HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL  169 (198)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc---cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHH
Confidence            9999999999999987652  45689999999999966   35567777777764 468999999999999999999999


Q ss_pred             HHHHHHH
Q psy38           146 TQEIYNR  152 (193)
Q Consensus       146 ~~~i~~~  152 (193)
                      ++.++.+
T Consensus       170 ~~~~~~~  176 (198)
T cd04142         170 LISATTR  176 (198)
T ss_pred             HHHhhcc
Confidence            9988753

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=1.8e-25  Score=160.82  Aligned_cols=142  Identities=23%  Similarity=0.413  Sum_probs=121.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.+.||.+.++....+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+++.
T Consensus        14 Tsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   92 (161)
T cd04124          14 SKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLS   92 (161)
T ss_pred             HHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence            3677776     4566778887888888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+....  ...|+++|+||.|+..    .  ...+...++...+++++++||++|.|++++|+.+++.+++.
T Consensus        93 ~~~~~i~~~~--~~~p~ivv~nK~Dl~~----~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124          93 KWYEELREYR--PEIPCIVVANKIDLDP----S--VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHhC--CCCcEEEEEECccCch----h--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999997753  3579999999999843    1  23455677777889999999999999999999999988763

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04177 RSR1 RSR1 subgroup

Probab=99.94  E-value=2.2e-25  Score=161.38  Aligned_cols=144  Identities=31%  Similarity=0.486  Sum_probs=125.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++ +.+.+.+.+ ++..+.+++|||+|+++|..+++.++++++++++|||++++++|+.+..
T Consensus        16 sli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~   93 (168)
T cd04177          16 ALTVQFVQNVFIESYDPTIE-DSYRKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGE   93 (168)
T ss_pred             HHHHHHHhCCCCcccCCcch-heEEEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence            566666     567889987 455677778 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |...+.......+.|+++++||.|+..   .+.+..+++..+++..+ ++++++||+++.|++++|.+++.+++-
T Consensus        94 ~~~~i~~~~~~~~~piiiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~~  165 (168)
T cd04177          94 LREQVLRIKDSDNVPMVLVGNKADLED---DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC  165 (168)
T ss_pred             HHHHHHHhhCCCCCCEEEEEEChhccc---cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            999998765556789999999999976   46677788888888887 799999999999999999999987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=2.5e-25  Score=161.90  Aligned_cols=141  Identities=29%  Similarity=0.435  Sum_probs=120.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ..+|.||+ .+++...+.+ ++..+.+++|||+|++++..++..+++++|++|+|||++++++|+.+. 
T Consensus        15 sl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~   92 (173)
T cd04130          15 SLIVSYTTNGYPTEYVPTA-FDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISE   92 (173)
T ss_pred             HHHHHHHhCCCCCCCCCce-eeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHH
Confidence            556555     67888997 4777777888 888899999999999999999999999999999999999999999985 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++||||.|+....         ..+.+..+++..+++..+. .|+++||++|.||+++|+.++
T Consensus        93 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130          93 KWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            6998887642  358999999999996432         2467888999999999887 999999999999999999886


Q ss_pred             H
Q psy38           147 Q  147 (193)
Q Consensus       147 ~  147 (193)
                      -
T Consensus       171 ~  171 (173)
T cd04130         171 L  171 (173)
T ss_pred             h
Confidence            4

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.93  E-value=5.7e-25  Score=158.10  Aligned_cols=144  Identities=49%  Similarity=0.795  Sum_probs=127.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        15 tli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~   93 (164)
T smart00175       15 SLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKN   93 (164)
T ss_pred             HHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHH
Confidence            566776     5677789998888888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+..+.. ...|+++|+||.|+..   ...+..+.+..++...+++++++||+++.|++++|.++.+.+.+
T Consensus        94 ~l~~~~~~~~-~~~pivvv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175       94 WLKELREYAD-PNVVIMLVGNKSDLED---QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             HHHHHHHhCC-CCCeEEEEEEchhccc---ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            9999988753 4789999999999865   35677888888998889999999999999999999999998754

Rab GTPases are implicated in vesicle trafficking.

>cd01863 Rab18 Rab18 subfamily

Probab=99.93  E-value=5.1e-25  Score=158.13  Aligned_cols=141  Identities=40%  Similarity=0.679  Sum_probs=125.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+++||++|++.+..++..+++++|++++|||++++.+|+.+..
T Consensus        15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   93 (161)
T cd01863          15 SLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLET   93 (161)
T ss_pred             HHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHH
Confidence            566666     4568999998888888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+..+......|+++|+||.|+..    ..+..++...++...+++++++||++|.|++++|.++++.
T Consensus        94 ~~~~i~~~~~~~~~~~~iv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          94 WLNELETYSTNNDIVKMLVGNKIDKEN----REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             HHHHHHHhCCCCCCcEEEEEECCcccc----cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            999999887677899999999999974    4567788889999999999999999999999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=5.2e-25  Score=166.27  Aligned_cols=148  Identities=28%  Similarity=0.317  Sum_probs=125.9

Q ss_pred             eeeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhcc-CccEEEEEEeCCChhHHhh
Q psy38             2 VTLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR-NSVGALLVYDITSRASFEH   74 (193)
Q Consensus         2 ~sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~   74 (193)
                      +||+++|     . ..|.||++.++..+.+.+ ++..+.+.+|||+|++.  .....++. ++|++++|||++++.+|+.
T Consensus        14 TsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~   90 (221)
T cd04148          14 SSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFER   90 (221)
T ss_pred             HHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHH
Confidence            3677777     2 678888877888888888 88899999999999982  23455666 9999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      +..|+..+.........|+++|+||.|+..   .+.+..+++..++...+++|+++||+++.||+++|+++++.+.....
T Consensus        91 ~~~~~~~l~~~~~~~~~piilV~NK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~  167 (221)
T cd04148          91 ASELRIQLRRNRQLEDRPIILVGNKSDLAR---SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRD  167 (221)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEChhccc---cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Confidence            999999998865456789999999999976   46788888889998889999999999999999999999999876544


Q ss_pred             C
Q psy38           155 S  155 (193)
Q Consensus       155 ~  155 (193)
                      .
T Consensus       168 ~  168 (221)
T cd04148         168 S  168 (221)
T ss_pred             c
Confidence            4

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01861 Rab6 Rab6 subfamily

Probab=99.93  E-value=5.1e-25  Score=158.07  Aligned_cols=141  Identities=35%  Similarity=0.627  Sum_probs=125.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.|+.+.++....+.+ ++..+.+++||++|++++..++..+++++|++|+|||++++++|+.+..
T Consensus        15 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~   93 (161)
T cd01861          15 SIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDK   93 (161)
T ss_pred             HHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            567776     4577899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+..... ...|+++|+||+|+.+   .+.+..++...++...+++++++||+++.|++++|.++.+.
T Consensus        94 ~~~~~~~~~~-~~~~iilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          94 WIDDVRDERG-NDVIIVLVGNKTDLSD---KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             HHHHHHHhCC-CCCEEEEEEEChhccc---cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            9999877543 3689999999999965   46678888888888888999999999999999999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.93  E-value=8.6e-25  Score=157.19  Aligned_cols=142  Identities=39%  Similarity=0.728  Sum_probs=126.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||.|.++....+.+ ++..+.+.+||++|++++...+..+++++|++|+|||++++++|..+..
T Consensus        16 sli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   94 (163)
T cd01860          16 SLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS   94 (163)
T ss_pred             HHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            566666     4458899998888899999 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+..... ...|+++++||.|+..   .+.++.++...++...++.++++||++|.|+.++|.++++.+
T Consensus        95 ~~~~~~~~~~-~~~~iivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860          95 WVKELQRNAS-PNIIIALVGNKADLES---KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             HHHHHHHhCC-CCCeEEEEEECccccc---cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999988753 5789999999999875   356778888889998899999999999999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.93  E-value=5e-25  Score=158.98  Aligned_cols=143  Identities=32%  Similarity=0.459  Sum_probs=119.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-ccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|     ..+|.||++.. ....+.+ ++..+.+++||++|++.+ ......+++++|++|+|||+++++||+.+.
T Consensus        14 sli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   91 (165)
T cd04146          14 ALVVRFLTKRFIGEYDPNLESL-YSRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEIS   91 (165)
T ss_pred             HHHHHHHhCccccccCCChHHh-ceEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHH
Confidence            566665     56788998644 4556677 888999999999999853 445678899999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCc-CHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF-QVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~e~f~~i~~~i~  150 (193)
                      .|+..+..... ....|+++||||+|+..   .+.+..+++..+++..+++|+++||+++. ||+++|.++++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146          92 QLKQLIREIKKRDREIPVILVGNKADLLH---YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCchHH---hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            99998887653 44689999999999965   36678888999999999999999999995 99999999998654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=5.3e-25  Score=159.72  Aligned_cols=142  Identities=19%  Similarity=0.159  Sum_probs=120.3

Q ss_pred             eeeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||++||     . .+|.||++.++....+.+ +|..+.+.+||++|++.+..++..+++++|++++|||++++.+|+.+
T Consensus        18 Tsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~   96 (169)
T cd01892          18 SALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYC   96 (169)
T ss_pred             HHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHH
Confidence            4678887     4 678999998888888888 88889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ..|+..+..   ....|+++|+||.|+.+.   +.+...+..++++..++ .++++||+++.|++++|..+++.++
T Consensus        97 ~~~~~~~~~---~~~~p~iiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892          97 AEVYKKYFM---LGEIPCLFVAAKADLDEQ---QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             HHHHHHhcc---CCCCeEEEEEEccccccc---ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            999886542   236899999999999652   33334456677888887 5799999999999999999999876

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.93  E-value=2.2e-24  Score=156.24  Aligned_cols=147  Identities=36%  Similarity=0.622  Sum_probs=127.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.+|++.++..+.+.+ ++..+.+++||++|++.+..++..+++++|++|++||++++.+|+.+..
T Consensus        15 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~   93 (172)
T cd01862          15 SLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDS   93 (172)
T ss_pred             HHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence            567776     5567789888898888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |...+.....   ..+.|+++|+||+|+..   .+.+..++...+++..+ ++++++||++|.|++++|.++++.+++..
T Consensus        94 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862          94 WRDEFLIQASPSDPENFPFVVLGNKIDLEE---KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcCccCCCCceEEEEEECccccc---ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            9988877654   23689999999999975   35567777778888887 79999999999999999999999988763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04135 Tc10 TC10 subfamily

Probab=99.93  E-value=1.2e-24  Score=158.15  Aligned_cols=143  Identities=27%  Similarity=0.367  Sum_probs=120.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     .+.|.||++ +.+...+.+ ++..+.+.+|||+|++.|..++..+++++|++++|||++++.+|+.+. 
T Consensus        15 sl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~   92 (174)
T cd04135          15 CLLMSYANDAFPEEYVPTVF-DHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE   92 (174)
T ss_pred             HHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHH
Confidence            566666     567889986 555667778 888899999999999999999999999999999999999999999995 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+...  ....|+++||||.|+..+..         .+.++.+++..+++..++ ++++|||++|.||+++|+.++
T Consensus        93 ~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~  170 (174)
T cd04135          93 EWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAI  170 (174)
T ss_pred             HHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHH
Confidence            588887765  45689999999999854311         236778889999999886 799999999999999999999


Q ss_pred             HHH
Q psy38           147 QEI  149 (193)
Q Consensus       147 ~~i  149 (193)
                      +.+
T Consensus       171 ~~~  173 (174)
T cd04135         171 LAI  173 (174)
T ss_pred             HHh
Confidence            876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.92  E-value=3.6e-25  Score=161.48  Aligned_cols=138  Identities=23%  Similarity=0.348  Sum_probs=106.5

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...+.||+|.++.  .+..   ..+.+++|||+|++++..++..+++++|++|+|||++++++++++..
T Consensus        27 TsL~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~  101 (175)
T smart00177       27 TTILYKLKLGESVTTIPTIGFNVE--TVTY---KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEARE  101 (175)
T ss_pred             HHHHHHHhcCCCCCcCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHH
Confidence            3567777    3457899987664  3334   35889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.........|++||+||.|+.+.     .+.++..+..     ....+.++++||++|.||+++|+||.+.+
T Consensus       102 ~l~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      102 ELHRMLNEDELRDAVILVFANKQDLPDA-----MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             HHHHHhhCHhhcCCcEEEEEeCcCcccC-----CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            8888875433346899999999999652     2222222221     12234577899999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=99.92  E-value=7.9e-25  Score=158.66  Aligned_cols=136  Identities=21%  Similarity=0.330  Sum_probs=107.9

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|.++.  .+..   ..+.+++|||+|+++++.+++.+++++|++|+|||++++.+|.++..
T Consensus        23 Tsli~~l~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~   97 (168)
T cd04149          23 TTILYKLKLGQSVTTIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQ   97 (168)
T ss_pred             HHHHHHHccCCCccccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHH
Confidence            3667776    3457899986654  3333   45889999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-----CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-----NDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      |+.++.......+.|++||+||.|+..     .+..+++.++...     ..+.++++||++|.|++++|.||.+
T Consensus        98 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149          98 ELHRIINDREMRDALLLVFANKQDLPD-----AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             HHHHHhcCHhhcCCcEEEEEECcCCcc-----CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            888777543334689999999999954     2455666665432     2347899999999999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=1.5e-24  Score=159.09  Aligned_cols=141  Identities=23%  Similarity=0.337  Sum_probs=107.3

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...+.||+|.++.  .+..   ..+.+++||++|+++++.++..+|+++|++|+|||+++++++.++..
T Consensus        31 Tsl~~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~  105 (181)
T PLN00223         31 TTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD  105 (181)
T ss_pred             HHHHHHHccCCCccccCCcceeEE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHH
Confidence            3566776    3357799986553  3343   45899999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      |+..+.........|++||+||.|+...     ...++..+...-.     .+.++++||++|+||.++|+||++.+..+
T Consensus       106 ~l~~~l~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        106 ELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHhcCHhhCCCCEEEEEECCCCCCC-----CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence            8887765433346899999999999652     2333332222111     12466899999999999999999887653

>cd04123 Rab21 Rab21 subfamily

Probab=99.92  E-value=8e-24  Score=151.63  Aligned_cols=142  Identities=37%  Similarity=0.672  Sum_probs=123.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.+|++.++....+.+ ++..+.+.+||++|++.+..+++.+++++|++++|||++++++++.+..
T Consensus        15 tli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   93 (162)
T cd04123          15 SLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKK   93 (162)
T ss_pred             HHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            566666     4466778877787788887 7888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+...... ..|+++|+||+|+..   .+.+..++..++++..++.++++|++++.|++++|.++.+.+
T Consensus        94 ~~~~i~~~~~~-~~piiiv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123          94 WIKELKQMRGN-NISLVIVGNKIDLER---QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             HHHHHHHhCCC-CCeEEEEEECccccc---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999887543 789999999999975   456777888888888899999999999999999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04158 ARD1 ARD1 subfamily

Probab=99.92  E-value=2.1e-24  Score=156.50  Aligned_cols=141  Identities=19%  Similarity=0.323  Sum_probs=113.7

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...+.||+|.++.  .+..   ..+.+++|||+|++++..++..+++++|++|+|||++++++|.++..
T Consensus        13 Tsl~~~l~~~~~~~~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~   87 (169)
T cd04158          13 TTILFKLKQDEFMQPIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHS   87 (169)
T ss_pred             HHHHHHHhcCCCCCcCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHH
Confidence            3677777    3358899886664  3343   45889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC------CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND------ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||.|+..     .++.+++.+++...+      +.+++|||++|.||+++|.||++.+..
T Consensus        88 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158          88 ELAKLLTEKELRDALLLIFANKQDVAG-----ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             HHHHHhcChhhCCCCEEEEEeCcCccc-----CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence            999998654445689999999999954     356677766664322      367899999999999999999987665


Q ss_pred             H
Q psy38           152 R  152 (193)
Q Consensus       152 ~  152 (193)
                      .
T Consensus       163 ~  163 (169)
T cd04158         163 A  163 (169)
T ss_pred             c
Confidence            3

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.92  E-value=4.3e-25  Score=158.67  Aligned_cols=136  Identities=23%  Similarity=0.365  Sum_probs=104.3

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...|.||+|.++.  .+..   ..+.+.+||++|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        14 Tsli~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~   88 (159)
T cd04150          14 TTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE   88 (159)
T ss_pred             HHHHHHHhcCCCcccCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHH
Confidence            3566776    3357899986653  3333   45889999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHH----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFA----SQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      |+..+.........|++|++||.|+...     ....+ ...+.    ....+.++++||++|.||+++|+||.+
T Consensus        89 ~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          89 ELQRMLNEDELRDAVLLVFANKQDLPNA-----MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHhcHHhcCCCEEEEEECCCCCCC-----CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            8888765433346899999999999542     22222 22222    123446789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.92  E-value=4.6e-24  Score=156.69  Aligned_cols=151  Identities=21%  Similarity=0.269  Sum_probs=119.8

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|.++....+.+.++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus        17 Tsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~   96 (183)
T cd04152          17 TTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKT   96 (183)
T ss_pred             HHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            4677777    224568888777766666534567999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh------CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ------NDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+..     .+..++...+...      .+++++++||++|.|++++|.+|++.+.+
T Consensus        97 ~~~~i~~~~~~~~~p~iiv~NK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152          97 ELHKITRFSENQGVPVLVLANKQDLPN-----ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             HHHHHHhhhhcCCCcEEEEEECcCccc-----cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence            998888765555789999999999854     2344444444321      12468899999999999999999999987


Q ss_pred             HhcCCC
Q psy38           152 RVQSGD  157 (193)
Q Consensus       152 ~~~~~~  157 (193)
                      ..+..+
T Consensus       172 ~~~~~~  177 (183)
T cd04152         172 RRKMLR  177 (183)
T ss_pred             HHhhhh
Confidence            766554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=5.1e-25  Score=161.64  Aligned_cols=141  Identities=21%  Similarity=0.332  Sum_probs=107.3

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||++||    ...+.||+|.++.  .+..   ..+.+++|||+|+++++.++..+++++|++|+|||++++++|.++..|
T Consensus        32 sli~~~~~~~~~~~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~  106 (182)
T PTZ00133         32 TILYKLKLGEVVTTIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREE  106 (182)
T ss_pred             HHHHHHhcCCccccCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHH
Confidence            566666    2347789886553  3444   458899999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +..+.........|++||+||.|+.+.     +..++.....     ....+.++++||++|.|++++|.+|.+.+.+++
T Consensus       107 l~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        107 LERMLSEDELRDAVLLVFANKQDLPNA-----MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHhCHhhcCCCEEEEEeCCCCCCC-----CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            887765422346899999999998542     2222222211     122245779999999999999999999887765

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.92  E-value=9.7e-24  Score=156.83  Aligned_cols=146  Identities=23%  Similarity=0.259  Sum_probs=121.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||++ ++....+.+ ++..+.+.+||++|+..|..++..++.++|++|+|||++++.+|+.+.
T Consensus        13 Tsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~   90 (198)
T cd04147          13 TALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVE   90 (198)
T ss_pred             HHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence            3567776     556788885 677778888 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.........|+++|+||.|+...  ...+..+...+... ..+++++++||++|.|++++|.++++.+..
T Consensus        91 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147          91 RLREEILEVKEDKFVPIVVVGNKADSLEE--ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             HHHHHHHHhcCCCCCcEEEEEEccccccc--cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence            99999998766667999999999998542  24455555555443 456789999999999999999999997753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=99.91  E-value=1.9e-23  Score=151.05  Aligned_cols=142  Identities=41%  Similarity=0.692  Sum_probs=122.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     .+.+.||++.++....+.+ ++..+.+.+||++|++.+...+..+++.+|++++|||++++.+|+.+..
T Consensus        22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  100 (169)
T cd04114          22 CLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE  100 (169)
T ss_pred             HHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence            455555     5578899988898888888 8888999999999999999988999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.... ....|+++|+||.|+..   .+.+.......+......+++++||++|.|++++|.++++.+
T Consensus       101 ~~~~l~~~~-~~~~~~i~v~NK~D~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         101 WLREIEQYA-NNKVITILVGNKIDLAE---RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             HHHHHHHhC-CCCCeEEEEEECccccc---ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            999887764 34688889999999975   356777777788877778999999999999999999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=1.8e-23  Score=154.07  Aligned_cols=148  Identities=28%  Similarity=0.398  Sum_probs=120.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     .+++.||++..+. ..+.+ ++..+.+.+||++|++.+......++.++++++++||++++++|+.+. 
T Consensus        16 tLl~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~   93 (187)
T cd04129          16 SLLSVFTLGEFPEEYHPTVFENYV-TDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRT   93 (187)
T ss_pred             HHHHHHHhCCCCcccCCcccceEE-EEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence            455665     5677888865544 45666 788899999999999998888888899999999999999999999996 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .|+..+....  ...|+++||||.|+..+.       ..+.+..+++..+++..+. +|++|||++|.||+++|.++++.
T Consensus        94 ~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  171 (187)
T cd04129          94 KWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRA  171 (187)
T ss_pred             HHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence            5999888654  358999999999985421       1345677888899999885 89999999999999999999998


Q ss_pred             HHHHhc
Q psy38           149 IYNRVQ  154 (193)
Q Consensus       149 i~~~~~  154 (193)
                      ++...+
T Consensus       172 ~~~~~~  177 (187)
T cd04129         172 ALLVRK  177 (187)
T ss_pred             HhcccC
Confidence            866443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.91  E-value=1.2e-24  Score=157.04  Aligned_cols=136  Identities=20%  Similarity=0.233  Sum_probs=110.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ...|.||+|.++    +.+ ++..+.+++||++|+++++.++..+++++|++|+|||++++.+|..+.
T Consensus        13 Tsli~~~~~~~~~~~~~pt~g~~~----~~i-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~   87 (164)
T cd04162          13 TSLLHSLSSERSLESVVPTTGFNS----VAI-PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLAR   87 (164)
T ss_pred             HHHHHHHhcCCCcccccccCCcce----EEE-eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence            3667777     567889998543    334 556789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH----HHHHHHHHhCCCcEEEecCCC------CcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE----AEAKAFASQNDILHFETSSRS------GFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~e~f~~i~  146 (193)
                      .|+..+....  .+.|+++|+||.|+...   +.+..    ..+..++++.++.+++|||++      ++||+++|..++
T Consensus        88 ~~l~~~~~~~--~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162          88 QELHQLLQHP--PDLPLVVLANKQDLPAA---RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             HHHHHHHhCC--CCCcEEEEEeCcCCcCC---CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence            9988887543  56899999999999663   22221    234566777788999999888      999999999886


Q ss_pred             H
Q psy38           147 Q  147 (193)
Q Consensus       147 ~  147 (193)
                      .
T Consensus       163 ~  163 (164)
T cd04162         163 N  163 (164)
T ss_pred             c
Confidence            4

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.91  E-value=2.8e-23  Score=151.07  Aligned_cols=143  Identities=29%  Similarity=0.435  Sum_probs=117.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     .+.|.||++..+. ..+.+ ++..+.+.+|||+|++.|..++..++.++|++++|||++++++|+.+. 
T Consensus        16 sl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~   93 (175)
T cd01870          16 CLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE   93 (175)
T ss_pred             HHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHH
Confidence            566676     5678899975554 45677 888899999999999999998889999999999999999999999985 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||.|+....         ....+...++.+++...+. ++++|||++|.|++++|.+++
T Consensus        94 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~  171 (175)
T cd01870          94 KWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT  171 (175)
T ss_pred             HHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence            5888877642  368999999999985421         1234567888889988775 899999999999999999998


Q ss_pred             HHH
Q psy38           147 QEI  149 (193)
Q Consensus       147 ~~i  149 (193)
                      +.+
T Consensus       172 ~~~  174 (175)
T cd01870         172 RAA  174 (175)
T ss_pred             HHh
Confidence            764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.91  E-value=3e-23  Score=148.99  Aligned_cols=143  Identities=34%  Similarity=0.472  Sum_probs=122.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||++ +...+...+ ++..+.+.+||++|++.+..++..+++.++++++|||++++.+|..+..
T Consensus        15 sl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   92 (164)
T cd04139          15 ALTLQFMYDEFVEDYEPTKA-DSYRKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAE   92 (164)
T ss_pred             HHHHHHHhCCCccccCCcch-hhEEEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence            556665     567888886 445566666 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+..+.........|+++|+||+|+..   .......+...++...+++++++||+++.|++++|.++++.+.
T Consensus        93 ~~~~~~~~~~~~~~piiiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139          93 FREQILRVKDDDNVPLLLVGNKCDLED---KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             HHHHHHHhcCCCCCCEEEEEEcccccc---ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999999875556789999999999865   2446677777888888899999999999999999999998765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.90  E-value=2e-22  Score=147.38  Aligned_cols=146  Identities=30%  Similarity=0.429  Sum_probs=124.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+++||++|++++..++..++..+++++++||+++..+|+.+..
T Consensus        16 tl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~   93 (180)
T cd04137          16 SLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKV   93 (180)
T ss_pred             HHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence            566776     456788886444 566677 7788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+..   .+.+..++...++...+++++++||+++.|+.++|.++.+.+....
T Consensus        94 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137          94 IYDKILDMLGKESVPIVLVGNKSDLHT---QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHhcCCCCCCEEEEEEchhhhh---cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999998876556789999999999965   3556667777888888899999999999999999999999887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.90  E-value=1.2e-22  Score=145.17  Aligned_cols=142  Identities=33%  Similarity=0.521  Sum_probs=123.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||.+ +.....+.+ ++..+.+++||++|++.+..++..+++++|++++|||+++++++.++..
T Consensus        14 sli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   91 (160)
T cd00876          14 AITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKG   91 (160)
T ss_pred             HHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            566665     577888886 666777777 7778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.........|+++|+||.|+..   ...+..+++..++...+++++++||+++.|++++|.+|++.+
T Consensus        92 ~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876          92 YREQILRVKDDEDIPIVLVGNKCDLEN---ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             HHHHHHHhcCCCCCcEEEEEECCcccc---cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence            999998876545789999999999976   356778889899998889999999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG4252|consensus

Probab=99.90  E-value=4.3e-25  Score=155.55  Aligned_cols=147  Identities=29%  Similarity=0.520  Sum_probs=136.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      |+|+||     .++|..|||+||..+.+.+ ++..+++.+||++|+++|......||+++.+.++||+.+|+.||+.+..
T Consensus        35 smiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~  113 (246)
T KOG4252|consen   35 SMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLE  113 (246)
T ss_pred             HHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHH
Confidence            567777     8899999999999999999 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      |.+.+.....  .+|.++|-||+||.+   ...+...++..+++...+.++.+|++...||.++|..+++...+..++
T Consensus       114 w~~kv~~e~~--~IPtV~vqNKIDlve---ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  114 WYNKVQKETE--RIPTVFVQNKIDLVE---DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHhc--cCCeEEeeccchhhH---hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999998754  589999999999988   477889999999999999999999999999999999999999887765

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.90  E-value=9.5e-23  Score=151.50  Aligned_cols=131  Identities=24%  Similarity=0.382  Sum_probs=107.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEec----CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMR----DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF   72 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~----~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~   72 (193)
                      +||++||     .++|.||+|.++..+.+.+.    ++..+.+++|||+|+++|..++..+|+++|++|+|||+++++||
T Consensus        14 TSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf   93 (202)
T cd04102          14 SSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSS   93 (202)
T ss_pred             HHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHH
Confidence            4677777     56789999988888888772    25789999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhc------------------CCCCCeEEEEeeCCCCCCCCCCCccCHH----HHHHHHHhCCCcEEEe
Q psy38            73 EHIPVWMMEAKRHI------------------EPHRPVFALVGCKLDLLQSGVPREVSEA----EAKAFASQNDILHFET  130 (193)
Q Consensus        73 ~~~~~~~~~i~~~~------------------~~~~~piilv~nK~Dl~~~~~~~~v~~~----~~~~~~~~~~~~~~~~  130 (193)
                      +++..|+.++....                  .....|++|||||.|+.+   .+.+...    ....++.+.+++.++.
T Consensus        94 ~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~---~r~~~~~~~~~~~~~ia~~~~~~~i~~  170 (202)
T cd04102          94 QNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP---EKESSGNLVLTARGFVAEQGNAEEINL  170 (202)
T ss_pred             HHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh---hcccchHHHhhHhhhHHHhcCCceEEE
Confidence            99999999998742                  124689999999999965   2334433    3446788899988887


Q ss_pred             cCCCC
Q psy38           131 SSRSG  135 (193)
Q Consensus       131 Sa~~~  135 (193)
                      +..+.
T Consensus       171 ~c~~~  175 (202)
T cd04102         171 NCTNG  175 (202)
T ss_pred             ecCCc
Confidence            76643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.89  E-value=3.4e-22  Score=150.36  Aligned_cols=142  Identities=26%  Similarity=0.495  Sum_probs=122.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++||     ...|.||+|.++....+.. ++..+.+.+|||+|++++..++..++.+++++|+|||+++..+|..+..
T Consensus        24 tLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~  102 (215)
T PTZ00132         24 TFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN  102 (215)
T ss_pred             HHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            566665     5789999999999888887 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      |+..+....  ...|+++||||.|+..    +.+..+ ...++...++.++++||++|.|++++|.+|++.++..
T Consensus       103 ~~~~i~~~~--~~~~i~lv~nK~Dl~~----~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        103 WHRDIVRVC--ENIPIVLVGNKVDVKD----RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHHHHHHhC--CCCCEEEEEECccCcc----ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            999998764  4588989999999864    223333 3467777889999999999999999999999988764

>cd04154 Arl2 Arl2 subfamily

Probab=99.89  E-value=1.1e-22  Score=148.06  Aligned_cols=135  Identities=20%  Similarity=0.296  Sum_probs=107.7

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|  +....+.+ +  .+.+.+||++|++.++.++..+++++|++++|||++++.+|..+..|
T Consensus        29 sL~~~l~~~~~~~~~~t~g--~~~~~~~~-~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  103 (173)
T cd04154          29 TILKKLLGEDIDTISPTLG--FQIKTLEY-E--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRE  103 (173)
T ss_pred             HHHHHHccCCCCCcCCccc--cceEEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHH
Confidence            566666    556788887  44445566 5  37899999999999998999999999999999999999999999889


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +..+.........|+++|+||+|+.+.     ...++..++..     ..+++++++||++|.|++++|.+++.
T Consensus       104 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         104 LKELLQEERLAGATLLILANKQDLPGA-----LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HHHHHhChhhcCCCEEEEEECcccccC-----CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            888876433456899999999999652     24444544442     24568999999999999999999874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00154 Rab Rab family

Probab=99.89  E-value=3.6e-22  Score=142.03  Aligned_cols=139  Identities=48%  Similarity=0.786  Sum_probs=122.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||.+.++....+.. ++..+.+.+||++|+..+...+..+++++|++|+|||+++++++..+..
T Consensus        15 tl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~   93 (159)
T cd00154          15 SLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDK   93 (159)
T ss_pred             HHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence            566666     5557889999999998888 7888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      |+..+..... ...|+++++||+|+..   ......++..+++...+++++++||+++.|++++|.+|+
T Consensus        94 ~~~~~~~~~~-~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          94 WLKELKEYAP-ENIPIILVGNKIDLED---QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HHHHHHHhCC-CCCcEEEEEEcccccc---cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999988752 4688999999999963   255677888889988889999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0070|consensus

Probab=99.89  E-value=2.2e-22  Score=143.01  Aligned_cols=145  Identities=22%  Similarity=0.315  Sum_probs=122.2

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ++||+++    .-...||+|  |....+.+   +++.+++||.+|+++++.+|+.|+++++++|||.|.+|++.+.++..
T Consensus        31 TTILykLk~~E~vttvPTiG--fnVE~v~y---kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~  105 (181)
T KOG0070|consen   31 TTILYKLKLGEIVTTVPTIG--FNVETVEY---KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKE  105 (181)
T ss_pred             eeeeEeeccCCcccCCCccc--cceeEEEE---cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHH
Confidence            5788888    334499998  77777777   46999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      -+..+.........|+++++||.|++++.+...++......-.......+..|+|.+|.|+.|.++|+...+..
T Consensus       106 eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  106 ELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            88888877666789999999999998875555555555555555566788899999999999999999987754

>cd00157 Rho Rho (Ras homology) family

Probab=99.88  E-value=9e-22  Score=142.41  Aligned_cols=141  Identities=29%  Similarity=0.428  Sum_probs=117.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...+.||+. +.....+.. ++..+.+++||++|++.+......+++.+|++++|||++++.+|.... 
T Consensus        15 sli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   92 (171)
T cd00157          15 CLLISYTTGKFPTEYVPTVF-DNYSATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKT   92 (171)
T ss_pred             HHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence            577777     356788875 555666677 888999999999999998888889999999999999999999999874 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC--------CccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP--------REVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .|+..+....  ...|+++|+||+|+......        ..+..+++.+++...++ +++++||++|.|++++|.++++
T Consensus        93 ~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157          93 KWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            5888777654  26899999999999653211        24567888889888887 9999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0073|consensus

Probab=99.88  E-value=7.3e-22  Score=137.24  Aligned_cols=146  Identities=20%  Similarity=0.284  Sum_probs=119.0

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ++|+++|    .+...||.|  |.-+++.+ .  .+++.+||++|+...++.|+.||+++|++|+|+|++|+..|++...
T Consensus        30 Tti~~kl~~~~~~~i~pt~g--f~Iktl~~-~--~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~  104 (185)
T KOG0073|consen   30 TTIVKKLLGEDTDTISPTLG--FQIKTLEY-K--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQ  104 (185)
T ss_pred             hhHHHHhcCCCccccCCccc--eeeEEEEe-c--ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHH
Confidence            3567777    667888887  55555555 3  4899999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .+..+.....-...|+++++||.|+........+.... ..+++++..++.+.||+.+|+++.+.|+|+...+..+
T Consensus       105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence            77777765445567888999999998654334443332 3356677889999999999999999999999999874

>cd04157 Arl6 Arl6 subfamily

Probab=99.88  E-value=5.4e-23  Score=147.56  Aligned_cols=135  Identities=19%  Similarity=0.301  Sum_probs=102.2

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|      ...+.||+|..+.  .+..   ..+.+++|||+|++++..++..+++++|++|+|+|++++.+|..+.
T Consensus        14 sl~~~l~~~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~   88 (162)
T cd04157          14 TIINQLKPENAQSQIIVPTVGFNVE--SFEK---GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVK   88 (162)
T ss_pred             HHHHHHcccCCCcceecCccccceE--EEEE---CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHH
Confidence            566666      3467899885432  2333   4588999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .|+..+.....  ....|+++|+||+|+...     ....+..+...     ...+.++++||++|.|++++|++|.+
T Consensus        89 ~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157          89 DELELLLNHPDIKHRRVPILFFANKMDLPDA-----LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             HHHHHHHcCcccccCCCCEEEEEeCccccCC-----CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            88888866421  246899999999998652     12222222111     12346899999999999999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.88  E-value=7.1e-23  Score=146.75  Aligned_cols=135  Identities=25%  Similarity=0.362  Sum_probs=100.5

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||++++    ...+.||+|.++.  .+..   ..+.+++|||+|++.+..+++.+++.+|++|+|+|++++.++.....|
T Consensus        14 sl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~   88 (158)
T cd04151          14 TILYRLQLGEVVTTIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEE   88 (158)
T ss_pred             HHHHHHccCCCcCcCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence            566666    3356788876543  3333   458899999999999999999999999999999999999888887777


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHH----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFA----SQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +..+.+.......|+++|+||+|+.+.     ....+.. .+.    ...+.+++++||++|.|++++|+++++
T Consensus        89 ~~~~~~~~~~~~~piiiv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          89 LHAMLEEEELKGAVLLVFANKQDMPGA-----LSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHhchhhcCCcEEEEEeCCCCCCC-----CCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            666554333346899999999998652     1222221 121    112357999999999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.88  E-value=1.3e-22  Score=146.84  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=106.2

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|..  ...+..   ..+.+++||++|++.++.++..+++++|++|+|||++++.+|+.+..|
T Consensus        14 sl~~~l~~~~~~~~~~t~g~~--~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~   88 (167)
T cd04161          14 TLVSALQGEIPKKVAPTVGFT--PTKLRL---DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEI   88 (167)
T ss_pred             HHHHHHhCCCCccccCcccce--EEEEEE---CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHH
Confidence            455555    56789999854  345555   348899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-ccCHHHHHHHHHhCC--CcEEEecCCCC------cCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPR-EVSEAEAKAFASQND--ILHFETSSRSG------FQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~--~~~~~~Sa~~~------~~i~e~f~~i~~  147 (193)
                      +..+.........|+++|+||.|+....... .+.......++.+.+  +.+++|||++|      .|+.+.|+||..
T Consensus        89 l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161          89 LRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             HHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            9999876444578999999999996631111 111111223343333  46778999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=1.4e-22  Score=147.59  Aligned_cols=135  Identities=22%  Similarity=0.382  Sum_probs=104.2

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||++++    ...+.||+|.++.  .+.+ +  .+.+.+||++|++.+...+..+++++|++|+|+|+++++++..+..|
T Consensus        30 sl~~~l~~~~~~~~~~t~~~~~~--~~~~-~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~  104 (174)
T cd04153          30 TILYQFLLGEVVHTSPTIGSNVE--EIVY-K--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEE  104 (174)
T ss_pred             HHHHHHccCCCCCcCCccccceE--EEEE-C--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence            566666    3346788876543  3444 3  58899999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHH----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFA----SQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +..+.........|+++++||.|+...     +..++ ...+.    ...+++++++||++|.||+++|.+|.+
T Consensus       105 l~~~~~~~~~~~~p~viv~NK~Dl~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         105 LYKMLAHEDLRKAVLLVLANKQDLKGA-----MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHhchhhcCCCEEEEEECCCCCCC-----CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            888876544456899999999998652     23332 22222    234567999999999999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.87  E-value=1.9e-22  Score=144.54  Aligned_cols=137  Identities=24%  Similarity=0.390  Sum_probs=105.1

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|.++  ..+..  +..+.+.+||++|++.+..++..++.++|++|+|+|++++.++..+..
T Consensus        13 Tsl~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~   88 (160)
T cd04156          13 STLLYKLKHAELVTTIPTVGFNV--EMLQL--EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQK   88 (160)
T ss_pred             HHHHHHHhcCCcccccCccCcce--EEEEe--CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence            3677777    234578887544  34444  245889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH------HHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK------AFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~------~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      |+..+.......+.|+++|+||+|+...     ....+..      .++...++++++|||++|.|++++|.+|++
T Consensus        89 ~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          89 ELKHILKNEHIKGVPVVLLANKQDLPGA-----LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHhchhhcCCCEEEEEECcccccC-----cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            9888876543457899999999998542     2222222      222224457999999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PLN00023 GTP-binding protein; Provisional

Probab=99.87  E-value=5.1e-21  Score=149.42  Aligned_cols=123  Identities=20%  Similarity=0.359  Sum_probs=102.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecC-------------CcEEEEEEeeCCCccccccchhhhccCccEEEEE
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRD-------------GARIKLQLWDTAGQERFRSITKSYYRNSVGALLV   63 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~-------------~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v   63 (193)
                      +||+++|     ...|.||+|.++..+.+.+ +             ++.+.++||||+|+++|+.++..||++++++|+|
T Consensus        35 TSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~-~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILV  113 (334)
T PLN00023         35 SSLVHLIVKGSSIARPPQTIGCTVGVKHITY-GSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFV  113 (334)
T ss_pred             HHHHHHHhcCCcccccCCceeeeEEEEEEEE-CCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEE
Confidence            4677887     5678999999998887777 4             3578999999999999999999999999999999


Q ss_pred             EeCCChhHHhhHHHHHHHHHHhcC-----------CCCCeEEEEeeCCCCCCCCCCCc---cCHHHHHHHHHhCCC
Q psy38            64 YDITSRASFEHIPVWMMEAKRHIE-----------PHRPVFALVGCKLDLLQSGVPRE---VSEAEAKAFASQNDI  125 (193)
Q Consensus        64 ~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~~~~~~---v~~~~~~~~~~~~~~  125 (193)
                      ||++++.+|+++..|+..+.....           ...+|++|||||+||......+.   +..++++++|+++++
T Consensus       114 yDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        114 HDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence            999999999999999999987642           12589999999999965211122   468999999999874

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.86  E-value=9.7e-22  Score=143.37  Aligned_cols=137  Identities=28%  Similarity=0.423  Sum_probs=109.7

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||++++    ...+.||+|  +....+.+ ++  +.+.+||.+|+..++..|+.|+.++|++|||+|.++.+.+.+....
T Consensus        29 tll~~l~~~~~~~~~pT~g--~~~~~i~~-~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~  103 (175)
T PF00025_consen   29 TLLNRLKNGEISETIPTIG--FNIEEIKY-KG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEE  103 (175)
T ss_dssp             HHHHHHHSSSEEEEEEESS--EEEEEEEE-TT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHH
T ss_pred             HHHHHhhhccccccCcccc--cccceeee-Cc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccc
Confidence            456665    345788987  44455666 44  7889999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH------hCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS------QNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +..+.........|+++++||.|+.+.     .+.++..+...      ...+.++.|||.+|.|+.|.|+||.++|
T Consensus       104 L~~ll~~~~~~~~piLIl~NK~D~~~~-----~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  104 LKELLNDPELKDIPILILANKQDLPDA-----MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHTSGGGTTSEEEEEEESTTSTTS-----STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhhcchhhcccceEEEEeccccccCc-----chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            888887655567999999999998653     34444443322      2345788999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.86  E-value=4.3e-21  Score=138.48  Aligned_cols=128  Identities=25%  Similarity=0.359  Sum_probs=103.0

Q ss_pred             CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      ..+.||++.++.  .+.+ +  ...+.+|||+|++.+..++..+++++|++++|+|+++++++..+..|+..+.......
T Consensus        32 ~~~~~t~~~~~~--~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~  106 (167)
T cd04160          32 SKITPTVGLNIG--TIEV-G--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALE  106 (167)
T ss_pred             cccCCccccceE--EEEE-C--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhc
Confidence            356788876664  3455 4  4789999999999999999999999999999999999999999989998887754445


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-------CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-------NDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ..|+++|+||+|+..     ....++...+...       .+++++++||++|.|++++|.||.+
T Consensus       107 ~~p~ilv~NK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         107 GVPLLILANKQDLPD-----ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             CCCEEEEEEcccccc-----CCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            789999999999855     2344444444332       2458999999999999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01893 Miro1 Miro1 subfamily

Probab=99.86  E-value=8.9e-21  Score=137.00  Aligned_cols=142  Identities=18%  Similarity=0.206  Sum_probs=105.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ..++.++. .++ .....+ ++..+.+.+|||+|++.+...+..++..+|++++|||++++.+|+.+.
T Consensus        14 Tsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~   90 (166)
T cd01893          14 SSLIMSLVSEEFPENVPRVL-PEI-TIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIR   90 (166)
T ss_pred             HHHHHHHHhCcCCccCCCcc-cce-Eeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHH
Confidence            3677777     33333333 232 344455 778899999999999988887888899999999999999999999985


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhC-C-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFASQN-D-ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                       .|+..+....  ...|+++|+||+|+.+.   ...  ..++...++... + ..+++|||+++.|++++|..+.+.+++
T Consensus        91 ~~~~~~i~~~~--~~~pviiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893          91 TKWLPLIRRLG--VKVPIILVGNKSDLRDG---SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHhC--CCCCEEEEEEchhcccc---cchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence             5888777653  36899999999999653   211  123333344443 2 389999999999999999999987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00879 Sar1 Sar1 subfamily

Probab=99.86  E-value=6.3e-21  Score=140.62  Aligned_cols=137  Identities=24%  Similarity=0.273  Sum_probs=108.9

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++++    ...|.||.+...  ..+.+ ++  +.+.+||++|+..+..++..++++++++++|+|+++.++|.....
T Consensus        33 StLi~~l~~~~~~~~~~T~~~~~--~~i~~-~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~  107 (190)
T cd00879          33 TTLLHMLKDDRLAQHVPTLHPTS--EELTI-GN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKE  107 (190)
T ss_pred             HHHHHHHhcCCCcccCCccCcce--EEEEE-CC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence            3567776    346778886543  44555 54  678999999999998889999999999999999999999998888


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh----------------CCCcEEEecCCCCcCHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ----------------NDILHFETSSRSGFQVENA  141 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~e~  141 (193)
                      |+..+.......+.|+++|+||.|+..     .+..++..++...                ..+.+++|||++|.|++++
T Consensus       108 ~~~~i~~~~~~~~~pvivv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~  182 (190)
T cd00879         108 ELDSLLSDEELANVPFLILGNKIDLPG-----AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA  182 (190)
T ss_pred             HHHHHHcCccccCCCEEEEEeCCCCCC-----CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence            999888654445689999999999853     3556666665542                2246899999999999999


Q ss_pred             HHHHHHH
Q psy38           142 FTAVTQE  148 (193)
Q Consensus       142 f~~i~~~  148 (193)
                      |+|+++.
T Consensus       183 ~~~l~~~  189 (190)
T cd00879         183 FRWLSQY  189 (190)
T ss_pred             HHHHHhh
Confidence            9999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.85  E-value=3.3e-21  Score=137.89  Aligned_cols=135  Identities=22%  Similarity=0.329  Sum_probs=106.6

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||++++    ...+.||++...  ..+.+ +  .+.+.+||++|++.+...+..+++++|++++|||+++++++..+..|
T Consensus        14 sli~~~~~~~~~~~~~t~~~~~--~~~~~-~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~   88 (158)
T cd00878          14 TILYKLKLGEVVTTIPTIGFNV--ETVEY-K--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEE   88 (158)
T ss_pred             HHHHHHhcCCCCCCCCCcCcce--EEEEE-C--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence            566676    456788887544  33444 3  47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +..+.........|+++|+||+|+...     ...++..+...     ...++++++||++|.|++++|.+|..
T Consensus        89 ~~~~~~~~~~~~~piiiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          89 LHKLLNEEELKGVPLLIFANKQDLPGA-----LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHhCcccCCCcEEEEeeccCCccc-----cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            988887655567899999999998652     12333333322     23468999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.83  E-value=5e-20  Score=135.36  Aligned_cols=137  Identities=20%  Similarity=0.229  Sum_probs=105.1

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++++    ...+.||.+...  ..+.+ +  .+.+.+||++|++.++.++..++.++|++|+|+|+++++++.....
T Consensus        31 Tsli~~l~~~~~~~~~~t~~~~~--~~~~~-~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~  105 (184)
T smart00178       31 TTLLHMLKNDRLAQHQPTQHPTS--EELAI-G--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKR  105 (184)
T ss_pred             HHHHHHHhcCCCcccCCccccce--EEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHH
Confidence            3677777    235677876433  33444 4  3789999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh------------CCCcEEEecCCCCcCHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ------------NDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      |+..+.........|+++|+||.|+..     .++.++..+...-            ....+++|||++|.|++++++||
T Consensus       106 ~l~~l~~~~~~~~~piliv~NK~Dl~~-----~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl  180 (184)
T smart00178      106 ELDALLSDEELATVPFLILGNKIDAPY-----AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL  180 (184)
T ss_pred             HHHHHHcChhhcCCCEEEEEeCccccC-----CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence            888877643345689999999999854     2444444433211            12368999999999999999999


Q ss_pred             HHH
Q psy38           146 TQE  148 (193)
Q Consensus       146 ~~~  148 (193)
                      ...
T Consensus       181 ~~~  183 (184)
T smart00178      181 SQY  183 (184)
T ss_pred             Hhh
Confidence            864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0071|consensus

Probab=99.83  E-value=4e-20  Score=125.52  Aligned_cols=143  Identities=22%  Similarity=0.363  Sum_probs=117.4

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ++||..+    .....||+|  |....+++   +++.+.+||.+|+++.+.+|++||.++.++|||.|..+++.+++++.
T Consensus        31 TtiLyKLkl~~~~~~ipTvG--FnvetVty---kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~  105 (180)
T KOG0071|consen   31 TTILYKLKLGQSVTTIPTVG--FNVETVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARN  105 (180)
T ss_pred             eehhhHHhcCCCcccccccc--eeEEEEEe---eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHH
Confidence            3555555    567789988  77777777   66999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      -+-.+.......+.|+++.+||.|+..+....++......+-++...+.+..+||.+|.|+.|-|.|++..+
T Consensus       106 ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  106 ELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             HHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            888888776677899999999999987644444444444344555567788999999999999999998743

>KOG0075|consensus

Probab=99.83  E-value=4.3e-20  Score=126.31  Aligned_cols=137  Identities=21%  Similarity=0.308  Sum_probs=110.5

Q ss_pred             ccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC
Q psy38             8 YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE   87 (193)
Q Consensus         8 ~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~   87 (193)
                      |.+.-.||+|  |..+.+   +...+.+.+||.+|+.+|+.+|+.|++.++++++|.|+++++.+.-.+.-+.++.....
T Consensus        45 ~~edmiptvG--fnmrk~---tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~  119 (186)
T KOG0075|consen   45 YLEDMIPTVG--FNMRKV---TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPS  119 (186)
T ss_pred             chhhhccccc--ceeEEe---ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchh
Confidence            4677789988  443333   44569999999999999999999999999999999999999988888888888887766


Q ss_pred             CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            88 PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        88 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ...+|++++|||.|+.++.....+....+..-.....+.+|.+|+++..|++.+.+|++++-
T Consensus       120 l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  120 LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence            77899999999999987543333333333333344557899999999999999999999864

>KOG3883|consensus

Probab=99.83  E-value=8.9e-20  Score=125.58  Aligned_cols=140  Identities=23%  Similarity=0.358  Sum_probs=125.2

Q ss_pred             cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC
Q psy38             9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE   87 (193)
Q Consensus         9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~   87 (193)
                      ..++.||+. |++...+..+.|..-.++|+||+|...+ ..+.++|+.-+|++++|||..+++||+.+.-...+|.....
T Consensus        37 ~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd  115 (198)
T KOG3883|consen   37 GTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD  115 (198)
T ss_pred             CCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc
Confidence            678999996 8998888886777789999999998887 66889999999999999999999999998877777877776


Q ss_pred             CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            88 PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        88 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      ....||++++||.|+.+   ++.+..+-+..+|++..+..++++|.+...+-|.|..+...+...
T Consensus       116 KKEvpiVVLaN~rdr~~---p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~p  177 (198)
T KOG3883|consen  116 KKEVPIVVLANKRDRAE---PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQP  177 (198)
T ss_pred             cccccEEEEechhhccc---chhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCC
Confidence            77899999999999987   688999999999999999999999999999999999988866543

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.83  E-value=3.3e-20  Score=132.02  Aligned_cols=135  Identities=22%  Similarity=0.308  Sum_probs=104.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ..++.||++.++..  +.. ++  +.+.+||++|++.+..++..+++++|++++|+|++++.++.....
T Consensus        14 sl~~~l~~~~~~~~~~~t~~~~~~~--~~~-~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~   88 (159)
T cd04159          14 TLVNVIAGGQFSEDTIPTVGFNMRK--VTK-GN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKN   88 (159)
T ss_pred             HHHHHHccCCCCcCccCCCCcceEE--EEE-CC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            566666     56788998866653  444 33  889999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      |+..+.........|+++|+||.|+.+.   .  .........     ....++++++|++++.|++++|.++++
T Consensus        89 ~~~~~~~~~~~~~~p~iiv~nK~D~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          89 ELHDLLEKPSLEGIPLLVLGNKNDLPGA---L--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHcChhhcCCCEEEEEeCccccCC---c--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            8888776443456899999999998652   1  112221111     123468899999999999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG4423|consensus

Probab=99.78  E-value=7.4e-21  Score=134.92  Aligned_cols=153  Identities=26%  Similarity=0.450  Sum_probs=128.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|++.||     +..|..|||.+|..+...+.+...+++++||++||+++..+.+.||+.+++.++|||++..-+|+.+.
T Consensus        39 ts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~s  118 (229)
T KOG4423|consen   39 TSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVS  118 (229)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHH
Confidence            3556666     77899999999999999994444579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|.+++.....   ....|+++.+||+|....  ...-......++++++|+ ..+++|++.+.++.|+-..+++.++-+
T Consensus       119 kwkqdldsk~qLpng~Pv~~vllankCd~e~~--a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  119 KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS--AKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             HHHHhccCcccCCCCCcchheeccchhccChH--hhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence            99999987654   235789999999998652  111223566688899998 899999999999999999999998887


Q ss_pred             hcCC
Q psy38           153 VQSG  156 (193)
Q Consensus       153 ~~~~  156 (193)
                      -.+.
T Consensus       197 d~q~  200 (229)
T KOG4423|consen  197 DEQP  200 (229)
T ss_pred             ccCC
Confidence            6443

>KOG1673|consensus

Probab=99.78  E-value=2.2e-18  Score=119.04  Aligned_cols=148  Identities=26%  Similarity=0.469  Sum_probs=124.9

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+-.|     +++|.-|.|+.+..+.+.+ .|..+.+.+||.+|++++..+.+..-+++-+++|+||++.+.+++.+.
T Consensus        34 Ts~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~  112 (205)
T KOG1673|consen   34 TSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIK  112 (205)
T ss_pred             eeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHH
Confidence            4555566     5778889999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC--CccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP--REVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+.+..... ...+|| +||+|.|+--+.+.  ..--..+++.+|+.++.+.|.||+....||..+|.-+...+.+.
T Consensus       113 ~WY~QAr~~N-ktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  113 EWYRQARGLN-KTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHhccC-CccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence            9999988764 556898 89999997432111  11112457788888999999999999999999999988887764

>cd04155 Arl3 Arl3 subfamily

Probab=99.78  E-value=6.1e-19  Score=127.96  Aligned_cols=135  Identities=21%  Similarity=0.299  Sum_probs=100.2

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||++++    ...+.||.|.++  ..+.. ++  ..+.+||++|+..+...+..+++++|++++|+|+++..++.....|
T Consensus        29 tLl~~l~~~~~~~~~~t~g~~~--~~i~~-~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~  103 (173)
T cd04155          29 TILKQLASEDISHITPTQGFNI--KTVQS-DG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAE  103 (173)
T ss_pred             HHHHHHhcCCCcccCCCCCcce--EEEEE-CC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHH
Confidence            456666    334778887443  44555 54  6789999999998888888999999999999999999999988888


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +..+.........|+++++||.|+...     ...++..+.....     ..+++++||++|.|++++|+||.+
T Consensus       104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         104 LVELLEEEKLAGVPVLVFANKQDLATA-----APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             HHHHHhChhhcCCCEEEEEECCCCccC-----CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            877776544456899999999998542     1122221111111     124789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=125.73  Aligned_cols=152  Identities=33%  Similarity=0.457  Sum_probs=118.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +||++||     .+.|.||++..+....+.. .+..+.+.+|||+|+++|+.++..|+.+++++++|||.++..++.++ 
T Consensus        19 Ttl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~   97 (219)
T COG1100          19 TTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP-YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELT   97 (219)
T ss_pred             HHHHHHHhcCcCcccCCCceeeeeEEEEEEe-CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence            4677777     6678899988888888877 66689999999999999999999999999999999999996555554 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC---------CccCHHHHHHHHHhC---CCcEEEecCC--CCcCHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP---------REVSEAEAKAFASQN---DILHFETSSR--SGFQVENA  141 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~---------~~v~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~e~  141 (193)
                      ..|...+..... ...|+++|+||+|+......         +..........+...   ...++++|++  .+.+|.++
T Consensus        98 ~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~  176 (219)
T COG1100          98 EEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL  176 (219)
T ss_pred             HHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHH
Confidence            779998887653 46899999999999764210         122233222322222   3358999999  99999999


Q ss_pred             HHHHHHHHHHHhcC
Q psy38           142 FTAVTQEIYNRVQS  155 (193)
Q Consensus       142 f~~i~~~i~~~~~~  155 (193)
                      |.+++..+......
T Consensus       177 ~~~~~~~~~~~~~~  190 (219)
T COG1100         177 FKELLRKLLEEIEK  190 (219)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999875433

>cd01890 LepA LepA subfamily

Probab=99.77  E-value=6.1e-18  Score=123.36  Aligned_cols=111  Identities=23%  Similarity=0.285  Sum_probs=87.1

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ++..+.+.||||+|++++...+..+++++|++|+|||+++..+++....|.... .    .+.|+++|+||.|+.+.   
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~---  134 (179)
T cd01890          63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSA---  134 (179)
T ss_pred             CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcC---
Confidence            456789999999999999999999999999999999999877777666664322 1    24688999999998541   


Q ss_pred             CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .  ......++++..++   .++++||++|.|++++|.++.+.+
T Consensus       135 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         135 D--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             C--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            1  22233455665565   489999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.75  E-value=3.8e-18  Score=120.00  Aligned_cols=119  Identities=19%  Similarity=0.116  Sum_probs=86.0

Q ss_pred             eeeeeec---cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc-----ccccchhhhccCccEEEEEEeCCChhHHh
Q psy38             2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE-----RFRSITKSYYRNSVGALLVYDITSRASFE   73 (193)
Q Consensus         2 ~sll~r~---~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~   73 (193)
                      +||++||   ...+.+|++.++        .+     .+|||+|+.     .+..+.. .++++|++|+|||++++.++.
T Consensus        14 SsL~~~l~~~~~~~~~t~~~~~--------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~   79 (142)
T TIGR02528        14 TTLTQALQGEEILYKKTQAVEY--------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRF   79 (142)
T ss_pred             HHHHHHHcCCccccccceeEEE--------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCC
Confidence            4688888   223455554332        11     689999972     3444433 589999999999999999886


Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      . ..|....       ..|+++|+||+|+.+    +....+++.++++..+. +++++||++|.|++++|.++.
T Consensus        80 ~-~~~~~~~-------~~p~ilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        80 P-PGFASIF-------VKPVIGLVTKIDLAE----ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             C-hhHHHhc-------cCCeEEEEEeeccCC----cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            6 3454321       138889999999864    23456677778877776 899999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0072|consensus

Probab=99.74  E-value=7.2e-18  Score=115.07  Aligned_cols=144  Identities=21%  Similarity=0.278  Sum_probs=109.2

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      .|+-|.    .....||+|  |....+.+   ++..+++||.+|+-+.++.|+.||.+.|++|+|.|.+|++...-....
T Consensus        33 tIlyrlqvgevvttkPtig--fnve~v~y---KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~e  107 (182)
T KOG0072|consen   33 TILYRLQVGEVVTTKPTIG--FNVETVPY---KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVE  107 (182)
T ss_pred             EEEEEcccCcccccCCCCC--cCcccccc---ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHH
Confidence            455555    456678887  55555554   779999999999999999999999999999999999998877766665


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +-.+...-...+..+++++||.|........++....+.+-.++.-+.+|++||.+|+|+++..+|+.+.+-.
T Consensus       108 l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  108 LYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             HHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            5555554444568888999999987642223333333334444455799999999999999999999987643

>KOG0096|consensus

Probab=99.74  E-value=7.4e-18  Score=120.06  Aligned_cols=137  Identities=26%  Similarity=0.520  Sum_probs=119.4

Q ss_pred             eccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38             7 LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI   86 (193)
Q Consensus         7 r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~   86 (193)
                      .|...|.||+|.+.....+.- +...+++..|||+|++.+..+...||=+..++||+||++.+.++.++.+|..++...+
T Consensus        34 eFe~~y~at~Gv~~~pl~f~t-n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~  112 (216)
T KOG0096|consen   34 EFEKTYPATLGVEVHPLLFDT-NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR  112 (216)
T ss_pred             cceecccCcceeEEeeeeeec-ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence            447889999999988888776 5557999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .  ++||++.|||.|...    +. .......+-+..++.||+.||+++.|.+.-|.|+.+.+..
T Consensus       113 ~--NiPiv~cGNKvDi~~----r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  113 E--NIPIVLCGNKVDIKA----RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             c--CCCeeeeccceeccc----cc-cccccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence            4  489999999999866    22 2334446777889999999999999999999999987654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.73  E-value=1.4e-17  Score=120.26  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             cEEEEEEeeCCCcccccc---------chhhhccCccEEEEEEeCCChhHH--hhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            31 ARIKLQLWDTAGQERFRS---------ITKSYYRNSVGALLVYDITSRASF--EHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      ..+.+.+|||+|+.....         ........+|++++|+|+++..++  +....|+..+....  ...|+++|+||
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK  122 (168)
T cd01897          45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNK  122 (168)
T ss_pred             CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEc
Confidence            347899999999843110         001111236899999999987654  55667888887643  35899999999


Q ss_pred             CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+...   ..+..  ..+++...+.+++++||++|.|++++|+++.+.+
T Consensus       123 ~Dl~~~---~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         123 IDLLTF---EDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             cccCch---hhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            999652   22222  4455655677999999999999999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.73  E-value=5.2e-17  Score=117.35  Aligned_cols=112  Identities=15%  Similarity=0.079  Sum_probs=84.8

Q ss_pred             EEEEEeeCCCcc----ccccchhhhc---cCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCC
Q psy38            33 IKLQLWDTAGQE----RFRSITKSYY---RNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLL  103 (193)
Q Consensus        33 ~~l~l~D~~g~~----~~~~~~~~~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  103 (193)
                      ..+.+|||+|..    .+..+...++   ..+|++++|+|++++ ++++.+..|++.+..... ....|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            478999999963    2223344444   459999999999998 799999999999887642 2357888999999986


Q ss_pred             CCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           104 QSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ..   .. ..+....+... .+.+++++||+++.|++++|+++.+.
T Consensus       128 ~~---~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 DE---EE-LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             Cc---hh-hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            52   22 23334455555 36789999999999999999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.73  E-value=1.2e-16  Score=113.19  Aligned_cols=137  Identities=32%  Similarity=0.428  Sum_probs=108.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh-hHHhhHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR-ASFEHIP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~   76 (193)
                      ||++++     ...+.|+++.++....+.. ++..+.+.+||++|+.++..++..++++++++++++|+... .++....
T Consensus        16 tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~   94 (161)
T TIGR00231        16 TLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEIL   94 (161)
T ss_pred             HHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHh
Confidence            455555     5567788888888887887 77778999999999999999999999999999999999887 7777765


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                       .|...+...... ..|+++|+||.|+...   . +.......+......+++++||+++.|+.++|.+|
T Consensus        95 ~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~---~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        95 EKQTKEIIHHAES-NVPIILVGNKIDLRDA---K-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             HHHHHHHHHhccc-CCcEEEEEEcccCCcc---h-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence             677777766533 6899999999999652   2 34444444444456689999999999999999986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.72  E-value=4.2e-17  Score=116.95  Aligned_cols=126  Identities=18%  Similarity=0.128  Sum_probs=84.1

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCC
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEP   88 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~   88 (193)
                      +.+++..+.....+.+ ++ ...+.+|||+|+++|......++.++|++++|+|+++   +++++.+.    .+...   
T Consensus        32 ~~~~~t~~~~~~~~~~-~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~---  102 (164)
T cd04171          32 KKRGITIDLGFAYLDL-PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL---  102 (164)
T ss_pred             hccCceEEeeeEEEEe-cC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---
Confidence            3444444555555666 41 3578999999999987767778899999999999987   33333322    12211   


Q ss_pred             CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ...|+++|+||+|+.... ......++..++...   .+.+++++||+++.|++++|..+..
T Consensus       103 ~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         103 GIKRGLVVLTKADLVDED-WLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCcEEEEEECccccCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            124888999999996510 001112333344433   4579999999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.72  E-value=2.6e-16  Score=110.29  Aligned_cols=139  Identities=41%  Similarity=0.703  Sum_probs=107.5

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||++++      ...+.+|. .++....+.. .+....+.+||++|...+......+++.+|++++|+|++++.++....
T Consensus        11 tl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~   88 (157)
T cd00882          11 SLLNRLLGGEFVPEEYETTI-IDFYSKTIEV-DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVK   88 (157)
T ss_pred             HHHHHHHhCCcCCcccccch-hheeeEEEEE-CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence            456665      24556776 7888888877 677899999999999988888888999999999999999999999988


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH-HHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+............|+++|+||.|+...   ....... ...+....+.+++++|+.++.|+.+++.+|.
T Consensus        89 ~~~~~~~~~~~~~~~~~ivv~nk~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          89 EWLLLILINKEGENIPIILVGNKIDLPEE---RVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHhhccCCCcEEEEEeccccccc---cchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            87444444434557899999999998652   2122211 3344555678999999999999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.70  E-value=3e-16  Score=111.87  Aligned_cols=132  Identities=14%  Similarity=0.086  Sum_probs=94.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc------hhhhcc--CccEEEEEEeCCCh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI------TKSYYR--NSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~~--~~d~~i~v~d~~~~   69 (193)
                      ||++++     ...+.|++..+.....+.+ ++  ..+.+|||+|+..+...      +..++.  ++|++|+|+|.+++
T Consensus        11 sl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~   87 (158)
T cd01879          11 TLFNALTGARQKVGNWPGVTVEKKEGRFKL-GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL   87 (158)
T ss_pred             HHHHHHhcCcccccCCCCcccccceEEEee-CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc
Confidence            566666     2223354556666677777 65  57899999999876643      556664  99999999999875


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ++.   ..|+..+...    ..|+++|+||.|+...   ..+... ...++...+++++++||.++.|+.++|.++.+.
T Consensus        88 ~~~---~~~~~~~~~~----~~~~iiv~NK~Dl~~~---~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879          88 ERN---LYLTLQLLEL----GLPVVVALNMIDEAEK---RGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             hhH---HHHHHHHHHc----CCCEEEEEehhhhccc---ccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            442   3444444432    4789999999999652   223332 346777778999999999999999999999875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.69  E-value=8.3e-17  Score=119.17  Aligned_cols=121  Identities=18%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV   92 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p   92 (193)
                      .++.|.++......+ ++..+.+.+|||+|+++|...+..+++++|++++|||+++.. +.....|+..+..    ...|
T Consensus        46 e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p  119 (194)
T cd01891          46 ERERGITILAKNTAV-TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLK  119 (194)
T ss_pred             HHhcccccccceeEE-EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCC
Confidence            345666677666666 667789999999999999999999999999999999998742 2333344444433    2467


Q ss_pred             EEEEeeCCCCCCCCCCCccCHHHHHHHHH-------hCCCcEEEecCCCCcCHHHH
Q psy38            93 FALVGCKLDLLQSGVPREVSEAEAKAFAS-------QNDILHFETSSRSGFQVENA  141 (193)
Q Consensus        93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~e~  141 (193)
                      +++|+||+|+...  ......++..++..       ..+++++++||++|.|+.+.
T Consensus       120 ~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         120 PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             EEEEEECCCCCCC--CHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            8899999999642  11112344444442       23678999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0076|consensus

Probab=99.69  E-value=4.2e-17  Score=114.70  Aligned_cols=138  Identities=22%  Similarity=0.275  Sum_probs=107.3

Q ss_pred             CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      .+..||+|......  ++ +  +..+.|||.+|++..+++|..||..++++|+++|+++++.|++...-++.+...-...
T Consensus        51 ~ki~~tvgLnig~i--~v-~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le  125 (197)
T KOG0076|consen   51 SKITPTVGLNIGTI--EV-C--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE  125 (197)
T ss_pred             HHeecccceeecce--ee-c--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            45678888655544  44 3  3678999999999999999999999999999999999999999988888887776677


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHH-HHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEA-KAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      ..|+++.+||.|+.+.....++..-.. -+...+...++..+||.+|+||++...|++..+-++
T Consensus       126 g~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  126 GAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            899999999999976321111111111 011122446899999999999999999999977665

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.69  E-value=7.4e-16  Score=122.61  Aligned_cols=116  Identities=17%  Similarity=0.057  Sum_probs=88.8

Q ss_pred             EEEEEeeCCCccc----cccchhh---hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCC
Q psy38            33 IKLQLWDTAGQER----FRSITKS---YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        33 ~~l~l~D~~g~~~----~~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  104 (193)
                      ..+.+||++|..+    ...+...   +++.++++|+|+|+++.++++++..|..++..+.. ....|+++|+||+|+..
T Consensus       206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence            4688999999742    1223333   45579999999999988889999999999987643 23578999999999965


Q ss_pred             CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .   ..+..+....++...+.+++++||+++.||+++|.+|.+.+.+
T Consensus       286 ~---~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        286 E---EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             c---hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            2   3333344555556667899999999999999999999987654

>KOG0074|consensus

Probab=99.66  E-value=8.8e-17  Score=109.51  Aligned_cols=141  Identities=25%  Similarity=0.244  Sum_probs=105.9

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ++|.++    .....||.|  |..+.+.+ + ..+++.+||++|+...+..|..||++.|++|+|.|.+|...|+++..-
T Consensus        32 T~LKqL~sED~~hltpT~G--Fn~k~v~~-~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~e  107 (185)
T KOG0074|consen   32 TFLKQLKSEDPRHLTPTNG--FNTKKVEY-D-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEE  107 (185)
T ss_pred             hHHHHHccCChhhccccCC--cceEEEee-c-CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence            455555    456778887  77777776 4 368999999999999999999999999999999999999999999877


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +.++.+..+....|+++.+||.|+..+.....+....-....+...+.+-+|||.++.|+.+--+|+..
T Consensus       108 l~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  108 LVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             HHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            777777767778999999999998553111111111111111223357889999999999888887754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.65  E-value=1.3e-15  Score=129.50  Aligned_cols=123  Identities=21%  Similarity=0.275  Sum_probs=93.2

Q ss_pred             eeeEEEEEEEe--c--CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38            17 GVDFFARLVTM--R--DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV   92 (193)
Q Consensus        17 ~~~~~~~~~~~--~--~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p   92 (193)
                      |+++....+.+  .  ++..+.+.||||+|+.+|...+..++..+|++|+|+|+++..+.+....|...+.     .+.|
T Consensus        50 GiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ip  124 (595)
T TIGR01393        50 GITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLE  124 (595)
T ss_pred             CCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCC
Confidence            55555544433  1  4667999999999999999999999999999999999998777776666654432     2468


Q ss_pred             EEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHH
Q psy38            93 FALVGCKLDLLQSGVPREVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +++|+||+|+...     .......+++...++   .++++||++|.|++++|++|++.+
T Consensus       125 iIiViNKiDl~~~-----~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       125 IIPVINKIDLPSA-----DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEEEECcCCCcc-----CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            8999999998642     122233455555555   489999999999999999998865

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.63  E-value=1.6e-15  Score=109.95  Aligned_cols=113  Identities=18%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             EEEEEeeCCCccc----cccch---hhhccCccEEEEEEeCCCh------hHHhhHHHHHHHHHHhcCC------CCCeE
Q psy38            33 IKLQLWDTAGQER----FRSIT---KSYYRNSVGALLVYDITSR------ASFEHIPVWMMEAKRHIEP------HRPVF   93 (193)
Q Consensus        33 ~~l~l~D~~g~~~----~~~~~---~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~pi   93 (193)
                      ..+.+|||+|...    ...+.   ..+++++|++++|+|+++.      .++.+...|...+......      ...|+
T Consensus        44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  123 (176)
T cd01881          44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPV  123 (176)
T ss_pred             CeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCe
Confidence            5679999999732    22222   3457789999999999987      5788888888888765422      35899


Q ss_pred             EEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            94 ALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ++|+||+|+..   ................+..++++||+++.|++++++++...
T Consensus       124 ivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         124 IYVLNKIDLDD---AEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEEEchhcCc---hhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            99999999965   22222222334444456789999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.63  E-value=1.3e-15  Score=126.89  Aligned_cols=141  Identities=16%  Similarity=0.150  Sum_probs=93.9

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc----------ccccch-hhhccCccEEEEEEe
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE----------RFRSIT-KSYYRNSVGALLVYD   65 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~-~~~~~~~d~~i~v~d   65 (193)
                      ||+|+|      .....|+++.+.....+.+ ++..  +.+|||+|..          .|..+. ..+++++|++|+|+|
T Consensus       226 SLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~D  302 (472)
T PRK03003        226 SLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLID  302 (472)
T ss_pred             HHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEe
Confidence            677777      1233445556777777877 7755  5799999963          222222 246789999999999


Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      +++..+++++. ++..+..    ...|+++|+||+|+........+..+....+.....++++++||++|.||+++|..+
T Consensus       303 a~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i  377 (472)
T PRK03003        303 ASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPAL  377 (472)
T ss_pred             CCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHH
Confidence            99988877763 4444443    347899999999996421001111111112222234689999999999999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      .+.+..
T Consensus       378 ~~~~~~  383 (472)
T PRK03003        378 ETALES  383 (472)
T ss_pred             HHHHHH
Confidence            886643

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.63  E-value=3.6e-15  Score=107.43  Aligned_cols=139  Identities=18%  Similarity=0.089  Sum_probs=88.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecC-CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|     ...+.++...++....+.. + +....+.+|||+|+..|..++..++..+|++++|+|+++....+. .
T Consensus        15 sli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~   92 (168)
T cd01887          15 TLLDKIRKTNVAAGEAGGITQHIGAFEVPA-EVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQT-I   92 (168)
T ss_pred             HHHHHHHhcccccccCCCeEEeeccEEEec-ccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHH-H
Confidence            567776     2222223333444444444 2 245788999999999998888889999999999999987432111 1


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH------hCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS------QNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..+..+..    ...|+++|+||+|+..... ..+ ......+..      ...++++++||++|.|+.++|+++.+..
T Consensus        93 ~~~~~~~~----~~~p~ivv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887          93 EAIKLAKA----ANVPFIVALNKIDKPNANP-ERV-KNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             HHHHHHHH----cCCCEEEEEEceecccccH-HHH-HHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            11222222    2468889999999864210 001 111111111      1236899999999999999999998864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.62  E-value=6.1e-15  Score=117.26  Aligned_cols=113  Identities=16%  Similarity=0.110  Sum_probs=85.9

Q ss_pred             EEEEEeeCCCcccc----ccchhhh---ccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERF----RSITKSY---YRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~----~~~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D  101 (193)
                      ..+.+||+||..+.    ..+...+   ++.++++++|+|+++.   ++++++..|.+++..+.. ....|+++|+||+|
T Consensus       205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D  284 (329)
T TIGR02729       205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID  284 (329)
T ss_pred             eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence            66899999997432    2233444   4469999999999986   688888889888877642 23578999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +...   . ...+....++...+.+++++||+++.|++++|.++.+.+
T Consensus       285 L~~~---~-~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       285 LLDE---E-ELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             CCCh---H-HHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            9652   1 223445556666778999999999999999999998753

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01878 HflX HflX subfamily

Probab=99.62  E-value=3.7e-15  Score=111.07  Aligned_cols=132  Identities=20%  Similarity=0.095  Sum_probs=90.2

Q ss_pred             eeeeecc-------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---------ccchhhhccCccEEEEEEeC
Q psy38             3 TLLYLYI-------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---------RSITKSYYRNSVGALLVYDI   66 (193)
Q Consensus         3 sll~r~~-------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~~~~~~~~~~~d~~i~v~d~   66 (193)
                      ||++++.       ..+.+|++  .....+.+ ++. ..+.+|||+|....         ... ...+.++|++++|+|+
T Consensus        56 tLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~-~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~~~~d~ii~v~D~  130 (204)
T cd01878          56 TLFNALTGADVYAEDQLFATLD--PTTRRLRL-PDG-REVLLTDTVGFIRDLPHQLVEAFRST-LEEVAEADLLLHVVDA  130 (204)
T ss_pred             HHHHHHhcchhccCCccceecc--ceeEEEEe-cCC-ceEEEeCCCccccCCCHHHHHHHHHH-HHHHhcCCeEEEEEEC
Confidence            5666661       22344543  33344455 332 36889999997321         111 1236789999999999


Q ss_pred             CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38            67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      +++.++.....|...+... .....|+++|+||+|+...   ....     ..+...+.+++++||+++.|++++|.+|.
T Consensus       131 ~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~---~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~  201 (204)
T cd01878         131 SDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDD---EELE-----ERLEAGRPDAVFISAKTGEGLDELLEAIE  201 (204)
T ss_pred             CCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCCh---HHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence            9988888877777666543 3345789999999998552   1111     34445567899999999999999999998


Q ss_pred             HH
Q psy38           147 QE  148 (193)
Q Consensus       147 ~~  148 (193)
                      ..
T Consensus       202 ~~  203 (204)
T cd01878         202 EL  203 (204)
T ss_pred             hh
Confidence            75

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.61  E-value=9.3e-15  Score=120.36  Aligned_cols=132  Identities=18%  Similarity=0.227  Sum_probs=98.5

Q ss_pred             eeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCC
Q psy38             3 TLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~   67 (193)
                      ||+|++       ...+ |+.+.++....+.+ +|  ..+.+|||+|...+...        ...+++++|++++|||++
T Consensus       218 SLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~-~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s  293 (442)
T TIGR00450       218 SLLNALLKQDRAIVSDI-KGTTRDVVEGDFEL-NG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDAS  293 (442)
T ss_pred             HHHHHHhCCCCcccCCC-CCcEEEEEEEEEEE-CC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence            677777       2334 34457888888888 77  45689999998655432        246788999999999999


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ++.+++..  |+..+..    ...|+++|+||.|+...         ....++...+.+++++||++ .||+++|+.+.+
T Consensus       294 ~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~---------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~  357 (442)
T TIGR00450       294 QPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN---------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQ  357 (442)
T ss_pred             CCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc---------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence            98877765  7666543    24788899999998541         12345666778899999997 699999999999


Q ss_pred             HHHHHhc
Q psy38           148 EIYNRVQ  154 (193)
Q Consensus       148 ~i~~~~~  154 (193)
                      .+.+...
T Consensus       358 ~i~~~~~  364 (442)
T TIGR00450       358 KINAFYS  364 (442)
T ss_pred             HHHHHhc
Confidence            8877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK04213 GTP-binding protein; Provisional

Probab=99.61  E-value=8.4e-16  Score=114.29  Aligned_cols=133  Identities=19%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC-----------ccccccchhhhcc----CccEEE
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG-----------QERFRSITKSYYR----NSVGAL   61 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~~~----~~d~~i   61 (193)
                      +||++++     ...+.|++  ++....+.+ +    .+.+|||+|           ++.++.++..++.    .+++++
T Consensus        23 SsLin~l~~~~~~~~~~~~~--t~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   95 (201)
T PRK04213         23 STLVRELTGKKVRVGKRPGV--TRKPNHYDW-G----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAV   95 (201)
T ss_pred             HHHHHHHhCCCCccCCCCce--eeCceEEee-c----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEE
Confidence            3677777     22334433  444444444 2    489999999           5667666666664    356788


Q ss_pred             EEEeCCChhHHhhHHHHH--------HHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC--------
Q psy38            62 LVYDITSRASFEHIPVWM--------MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI--------  125 (193)
Q Consensus        62 ~v~d~~~~~s~~~~~~~~--------~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~--------  125 (193)
                      +|+|.++...+.  ..|.        ..+.......+.|+++|+||+|+...   .   .+...+++...++        
T Consensus        96 ~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~---~---~~~~~~~~~~~~~~~~~~~~~  167 (201)
T PRK04213         96 LVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN---R---DEVLDEIAERLGLYPPWRQWQ  167 (201)
T ss_pred             EEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc---H---HHHHHHHHHHhcCCccccccC
Confidence            888875422110  1221        11111111235788999999998652   1   3345556665554        


Q ss_pred             -cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           126 -LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       126 -~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                       +++++||++| |++++|++|.+.+.
T Consensus       168 ~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        168 DIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             CcEEEEecccC-CHHHHHHHHHHhhc
Confidence             4799999999 99999999988653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.59  E-value=1.4e-14  Score=122.79  Aligned_cols=130  Identities=18%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHh
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFE   73 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~   73 (193)
                      +||+++|     ...+.+++..++....+.+ ++. ..+.||||||++.|..++...+..+|++|+|+|+++.   ++++
T Consensus       101 TSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~-~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e  178 (587)
T TIGR00487       101 TSLLDSIRKTKVAQGEAGGITQHIGAYHVEN-EDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIE  178 (587)
T ss_pred             HHHHHHHHhCCcccccCCceeecceEEEEEE-CCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHH
Confidence            4677776     3334444555566566666 332 2688999999999999998899999999999999863   3333


Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-------C--CcEEEecCCCCcCHHHHHHH
Q psy38            74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-------D--ILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~e~f~~  144 (193)
                      .+    ....    ..+.|+++++||+|+.+.      ..+...+.....       +  .+++++||++|.|++++|++
T Consensus       179 ~i----~~~~----~~~vPiIVviNKiDl~~~------~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~  244 (587)
T TIGR00487       179 AI----SHAK----AANVPIIVAINKIDKPEA------NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM  244 (587)
T ss_pred             HH----HHHH----HcCCCEEEEEECcccccC------CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence            22    2222    234789999999998542      223333333222       2  47999999999999999999


Q ss_pred             HHH
Q psy38           145 VTQ  147 (193)
Q Consensus       145 i~~  147 (193)
                      +..
T Consensus       245 I~~  247 (587)
T TIGR00487       245 ILL  247 (587)
T ss_pred             hhh
Confidence            875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.58  E-value=1.4e-14  Score=120.67  Aligned_cols=133  Identities=20%  Similarity=0.152  Sum_probs=89.6

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCC
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+||+.      ....|++..+.....+.+ ++.  .+.+|||+|.+.        +......+++++|++|+|+|+++
T Consensus        53 SL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~  129 (472)
T PRK03003         53 TLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV  129 (472)
T ss_pred             HHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            6777771      233444445666666666 664  578999999763        33345668899999999999998


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ..++.. ..|...+..    ...|+++|+||+|+...      ..+....+  ..++ ..+++||++|.|++++|++++.
T Consensus       130 ~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~------~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~  196 (472)
T PRK03003        130 GATATD-EAVARVLRR----SGKPVILAANKVDDERG------EADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLA  196 (472)
T ss_pred             CCCHHH-HHHHHHHHH----cCCCEEEEEECccCCcc------chhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence            755432 233333332    24799999999998541      11222222  2344 4578999999999999999998


Q ss_pred             HHHH
Q psy38           148 EIYN  151 (193)
Q Consensus       148 ~i~~  151 (193)
                      .+.+
T Consensus       197 ~l~~  200 (472)
T PRK03003        197 ALPE  200 (472)
T ss_pred             hccc
Confidence            8744

>cd01894 EngA1 EngA1 subfamily

Probab=99.57  E-value=3.6e-14  Score=100.86  Aligned_cols=116  Identities=16%  Similarity=0.068  Sum_probs=79.8

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCcccccc--------chhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS--------ITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      .+.....+.. ++  ..+.+|||+|...+..        .....++++|++++++|..+..+....  ++..+...   .
T Consensus        33 ~~~~~~~~~~-~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~  104 (157)
T cd01894          33 RDRIYGEAEW-GG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---S  104 (157)
T ss_pred             eCceeEEEEE-CC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---c
Confidence            4555555555 44  6789999999987544        234567889999999999875443332  22222222   2


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..|+++|+||+|+...   ...     .......+. +++++|++++.|++++|+++++++
T Consensus       105 ~~piiiv~nK~D~~~~---~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         105 KKPVILVVNKVDNIKE---EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             CCCEEEEEECcccCCh---HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            3789999999998652   111     223334566 789999999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.57  E-value=2.9e-14  Score=114.29  Aligned_cols=131  Identities=21%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             eeeeecc-------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc---------ccccchhhhccCccEEEEEEeC
Q psy38             3 TLLYLYI-------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE---------RFRSITKSYYRNSVGALLVYDI   66 (193)
Q Consensus         3 sll~r~~-------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~~~~~d~~i~v~d~   66 (193)
                      ||+|++.       +...+|.  |.....+.++++  ..+.||||+|..         .|.... ..+.++|++++|+|+
T Consensus       204 SLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~  278 (351)
T TIGR03156       204 TLFNALTGADVYAADQLFATL--DPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDA  278 (351)
T ss_pred             HHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEEC
Confidence            5677771       1223443  566677777444  468899999972         222222 247799999999999


Q ss_pred             CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38            67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      +++.+++.+..|...+... ...+.|+++|+||+|+...   ..+     ... .....+++.+||++|.|+++++.+|.
T Consensus       279 s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~---~~v-----~~~-~~~~~~~i~iSAktg~GI~eL~~~I~  348 (351)
T TIGR03156       279 SDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE---PRI-----ERL-EEGYPEAVFVSAKTGEGLDLLLEAIA  348 (351)
T ss_pred             CCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh---HhH-----HHH-HhCCCCEEEEEccCCCCHHHHHHHHH
Confidence            9988887776666555443 2345789999999998541   111     111 11234689999999999999999987


Q ss_pred             HH
Q psy38           147 QE  148 (193)
Q Consensus       147 ~~  148 (193)
                      +.
T Consensus       349 ~~  350 (351)
T TIGR03156       349 ER  350 (351)
T ss_pred             hh
Confidence            64

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.56  E-value=2.5e-14  Score=118.28  Aligned_cols=128  Identities=20%  Similarity=0.202  Sum_probs=91.7

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+|++.      ....|....++....+.+ +|  ..+.+|||+|.+++...        ...+++++|++++|+|+++
T Consensus       230 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~  306 (449)
T PRK05291        230 SLLNALLGEERAIVTDIAGTTRDVIEEHINL-DG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE  306 (449)
T ss_pred             HHHHHHhCCCCcccCCCCCcccccEEEEEEE-CC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence            5677761      112233335777777887 76  55789999998765432        2246889999999999999


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +.++++...|..       ....|+++|+||+|+...   ....        ...+.+++++||++|.|++++++++.+.
T Consensus       307 ~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~---~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~  368 (449)
T PRK05291        307 PLTEEDDEILEE-------LKDKPVIVVLNKADLTGE---IDLE--------EENGKPVIRISAKTGEGIDELREAIKEL  368 (449)
T ss_pred             CCChhHHHHHHh-------cCCCCcEEEEEhhhcccc---chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence            887776544433       234788999999999652   1111        2345689999999999999999999987


Q ss_pred             HHH
Q psy38           149 IYN  151 (193)
Q Consensus       149 i~~  151 (193)
                      +..
T Consensus       369 l~~  371 (449)
T PRK05291        369 AFG  371 (449)
T ss_pred             Hhh
Confidence            754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.55  E-value=5.2e-14  Score=119.79  Aligned_cols=134  Identities=14%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc------hhhhc--cCccEEEEEEeCCC
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI------TKSYY--RNSVGALLVYDITS   68 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~--~~~d~~i~v~d~~~   68 (193)
                      +||+|++     .....|++..+.....+.+ ++  ..+++|||+|+.++...      .+.++  +++|++++|+|.++
T Consensus         8 SSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~   84 (591)
T TIGR00437         8 STLFNALTGANQTVGNWPGVTVEKKEGKLGF-QG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASN   84 (591)
T ss_pred             HHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCc
Confidence            3677777     1233455556777777777 65  45789999999877553      34444  37899999999987


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .+.   ...+..++.+    .+.|+++|+||.|+.+   .+.+. .+...+++..+++++++||++|.|++++|+++.+.
T Consensus        85 ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~---~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437        85 LER---NLYLTLQLLE----LGIPMILALNLVDEAE---KKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             chh---hHHHHHHHHh----cCCCEEEEEehhHHHH---hCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            432   2334444433    2479999999999865   23333 34567888889999999999999999999999875


Q ss_pred             H
Q psy38           149 I  149 (193)
Q Consensus       149 i  149 (193)
                      .
T Consensus       154 ~  154 (591)
T TIGR00437       154 I  154 (591)
T ss_pred             h
Confidence            3

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.55  E-value=1.9e-14  Score=98.12  Aligned_cols=96  Identities=27%  Similarity=0.514  Sum_probs=71.6

Q ss_pred             eeeeecc-C------CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             3 TLLYLYI-Q------ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         3 sll~r~~-~------~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      |||++|. .      .+.++.+.++......+ .+....+++||++|++.+...+..++.++|++|+|||++++.||+.+
T Consensus        14 sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~   92 (119)
T PF08477_consen   14 SLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYL   92 (119)
T ss_dssp             HHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHH
T ss_pred             HHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHH
Confidence            5677771 1      23344455566556666 77777799999999999888888889999999999999999999997


Q ss_pred             HH---HHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            76 PV---WMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        76 ~~---~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ..   |+..+...  ..+.|+++||||.|
T Consensus        93 ~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   93 SQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             HHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             HHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            44   56666553  23499999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.55  E-value=4.4e-14  Score=120.05  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=95.1

Q ss_pred             cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHh
Q psy38             9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRH   85 (193)
Q Consensus         9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~   85 (193)
                      .+++.+++.+++....+.. ++  ..+.|||++|+++|......++.++|++++|+|+++   +++++.+.    -+. .
T Consensus        29 ~eE~~rGiTid~~~~~~~~-~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~-~  100 (581)
T TIGR00475        29 PEEKKRGMTIDLGFAYFPL-PD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLD-L  100 (581)
T ss_pred             hhHhcCCceEEeEEEEEEe-CC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHH-H
Confidence            3456677777888777877 55  789999999999998888888999999999999987   44554432    122 2


Q ss_pred             cCCCCCe-EEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhC----CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            86 IEPHRPV-FALVGCKLDLLQSGVPREV--SEAEAKAFASQN----DILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        86 ~~~~~~p-iilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .   ..| +++|+||+|+.+.   ..+  ..++..++....    +++++++||++|.|+++++.++...+-.
T Consensus       101 l---gi~~iIVVlNK~Dlv~~---~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       101 L---GIPHTIVVITKADRVNE---EEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             c---CCCeEEEEEECCCCCCH---HHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            1   245 8899999999652   211  233455555543    4789999999999999999988775543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.54  E-value=2.8e-14  Score=117.75  Aligned_cols=122  Identities=21%  Similarity=0.153  Sum_probs=82.8

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccch-----------hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSIT-----------KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI   86 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~   86 (193)
                      .+.....+.. ++.  .+.+|||+|..++....           ..+++.+|++|+|+|++++.+.++.. ++..+..  
T Consensus       208 ~~~~~~~~~~-~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--  281 (429)
T TIGR03594       208 RDSIDIPFER-NGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--  281 (429)
T ss_pred             ECcEeEEEEE-CCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--
Confidence            4565566666 664  68899999976544321           24678999999999999876666542 3333333  


Q ss_pred             CCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFASQ----NDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                        ...|+++|+||+|+.+.   . ...++.. .+...    .+++++++||++|.|++++|.++.+....
T Consensus       282 --~~~~iiiv~NK~Dl~~~---~-~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       282 --AGKALVIVVNKWDLVKD---E-KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             --cCCcEEEEEECcccCCC---H-HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              24789999999999621   1 1111111 12222    34799999999999999999999986554

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.54  E-value=5.3e-14  Score=112.50  Aligned_cols=133  Identities=23%  Similarity=0.257  Sum_probs=87.7

Q ss_pred             eeeeeec--------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-cccchh-------hhccCccEEEEEEe
Q psy38             2 VTLLYLY--------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-FRSITK-------SYYRNSVGALLVYD   65 (193)
Q Consensus         2 ~sll~r~--------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~-------~~~~~~d~~i~v~d   65 (193)
                      +||+|+|        .+.+.+|.  +.....+.. ++  ..+.||||+|..+ +..+..       ..+.++|++++|+|
T Consensus        66 STLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~-~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD  140 (339)
T PRK15494         66 STLLNRIIGEKLSIVTPKVQTTR--SIITGIITL-KD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIID  140 (339)
T ss_pred             HHHHHHHhCCceeeccCCCCCcc--CcEEEEEEe-CC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEE
Confidence            3677777        12333342  445555666 55  4679999999843 333222       34779999999999


Q ss_pred             CCChhHHhhHHH-HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHH
Q psy38            66 ITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAF  142 (193)
Q Consensus        66 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f  142 (193)
                      .++  +|..... |+..+...    ..|.++|+||+|+..    .  ...+..+++...+  ..++++||++|.|++++|
T Consensus       141 ~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~----~--~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~  208 (339)
T PRK15494        141 SLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIES----K--YLNDIKAFLTENHPDSLLFPISALSGKNIDGLL  208 (339)
T ss_pred             CCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCcc----c--cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHH
Confidence            765  5666644 55555432    234568999999854    1  2345555655544  579999999999999999


Q ss_pred             HHHHHHHHH
Q psy38           143 TAVTQEIYN  151 (193)
Q Consensus       143 ~~i~~~i~~  151 (193)
                      ++|...+.+
T Consensus       209 ~~L~~~l~~  217 (339)
T PRK15494        209 EYITSKAKI  217 (339)
T ss_pred             HHHHHhCCC
Confidence            999886543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.54  E-value=1.2e-13  Score=98.02  Aligned_cols=116  Identities=19%  Similarity=0.211  Sum_probs=83.3

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHh
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRH   85 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~   85 (193)
                      |+...++....+.. ++  ..+.+|||+|...+...        ....+..+|++++|+|++++.+......|..     
T Consensus        33 ~~~~~~~~~~~~~~-~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----  104 (157)
T cd04164          33 AGTTRDVIEESIDI-GG--IPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-----  104 (157)
T ss_pred             CCCccceEEEEEEe-CC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----
Confidence            33345666666665 54  67899999997655322        2346779999999999998777666544332     


Q ss_pred             cCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            86 IEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        86 ~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                        ....|+++|+||+|+...   ...       .....+.+++++||+++.|+.+++.+|...+
T Consensus       105 --~~~~~vi~v~nK~D~~~~---~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         105 --PADKPIIVVLNKSDLLPD---SEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             --hcCCCEEEEEEchhcCCc---ccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence              235788999999998652   111       3344567899999999999999999988753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.53  E-value=2.6e-13  Score=110.90  Aligned_cols=113  Identities=16%  Similarity=0.124  Sum_probs=86.0

Q ss_pred             EEEEEeeCCCccc----cccchhhh---ccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQER----FRSITKSY---YRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D  101 (193)
                      ..+.+||+||...    ...+...|   ++.++++|+|+|+++.   +++++...|.+++..+.. ....|+++|+||+|
T Consensus       206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D  285 (424)
T PRK12297        206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD  285 (424)
T ss_pred             ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence            5689999999643    22244444   4469999999999864   678888888888887643 23679999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +..       ..+....+++..+.+++.+||+++.|+++++.+|.+.+...
T Consensus       286 L~~-------~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        286 LPE-------AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CcC-------CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            843       23445566666668899999999999999999999877654

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.52  E-value=1.1e-13  Score=119.30  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS  105 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  105 (193)
                      ++....+.||||||++.|..++..++..+|++|+|+|+++.   .+++.+.    .+.    ....|+++|+||+|+...
T Consensus       291 ~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k----~~~iPiIVViNKiDl~~~  362 (742)
T CHL00189        291 KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ----AANVPIIVAINKIDKANA  362 (742)
T ss_pred             cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH----hcCceEEEEEECCCcccc
Confidence            45668899999999999999999999999999999999874   3333322    122    235789999999998652


Q ss_pred             CCCCccCHHHHHHH-------HHhCC--CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           106 GVPREVSEAEAKAF-------ASQND--ILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       106 ~~~~~v~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                            ..+...+.       ...++  ++++++||++|.|++++|.++....
T Consensus       363 ------~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        363 ------NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ------CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence                  12222111       22233  6899999999999999999998753

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.52  E-value=7.7e-14  Score=100.07  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=74.6

Q ss_pred             EeeCCCcc-----ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            37 LWDTAGQE-----RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        37 l~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      +|||||..     .+..+ ...++++|++++|+|+++..++..  .|+..+.     ...|+++++||.|+..      .
T Consensus        41 ~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~-----~~~~ii~v~nK~Dl~~------~  106 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHGANDPESRLP--AGLLDIG-----VSKRQIAVISKTDMPD------A  106 (158)
T ss_pred             cccCCccccCCHHHHHHH-HHHHhcCCEEEEEEeCCCcccccC--HHHHhcc-----CCCCeEEEEEccccCc------c
Confidence            69999973     22222 234789999999999998876633  3544431     2468889999999854      2


Q ss_pred             CHHHHHHHHHhCCC--cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           112 SEAEAKAFASQNDI--LHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       112 ~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..+...+++...++  +++++||++|.|++++|.++.+.+-+
T Consensus       107 ~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        107 DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence            34556677777775  89999999999999999999775544

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.51  E-value=1.7e-13  Score=119.04  Aligned_cols=135  Identities=18%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHh
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFE   73 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~   73 (193)
                      +||++++     ...+.+.+..+.....+.+ ++  ..+.||||+|++.|..++...+..+|++|+|+|+++.   ++++
T Consensus       304 TSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e  380 (787)
T PRK05306        304 TSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIE  380 (787)
T ss_pred             HHHHHHHHhCCccccccCceeeeccEEEEEE-CC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHH
Confidence            4677776     2233344434455455666 54  5688999999999999999899999999999999873   3333


Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH--HHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHH
Q psy38            74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEA--KAFASQND--ILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~--~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .+    ..+.    ....|+|+++||+|+.+.. ...+..+..  ..++..++  ++++++||++|.|++++|++|...
T Consensus       381 ~i----~~a~----~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        381 AI----NHAK----AAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HH----HHHH----hcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            22    1122    2347899999999996521 011111100  01222333  689999999999999999999864

>TIGR00436 era GTP-binding protein Era

Probab=99.51  E-value=2.2e-13  Score=105.92  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=75.7

Q ss_pred             EEEEEeeCCCccccc-cc-------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            33 IKLQLWDTAGQERFR-SI-------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~-~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.||||||..... .+       ...+++++|++++|+|+++..+.+  ..++..+..    ...|+++|+||+|+..
T Consensus        48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKF  121 (270)
T ss_pred             cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCC
Confidence            568999999975421 11       245678999999999999876554  334444433    2478999999999854


Q ss_pred             CCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38           105 SGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                          .....+....++...+. +++++||++|.|++++++++.+.+
T Consensus       122 ----~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       122 ----KDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             ----HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence                11122334455554555 899999999999999999998765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.50  E-value=1.2e-13  Score=105.67  Aligned_cols=96  Identities=17%  Similarity=0.194  Sum_probs=78.2

Q ss_pred             cccccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh
Q psy38            44 ERFRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ  122 (193)
Q Consensus        44 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~  122 (193)
                      ++|..+.+.+++++|++++|||++++. +|+.+.+|+..+..    .++|+++|+||+||..   ...+..+....+. +
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~---~~~~~~~~~~~~~-~   95 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLD---DEDMEKEQLDIYR-N   95 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCC---CHHHHHHHHHHHH-H
Confidence            678888899999999999999999877 89999999986654    3477889999999965   2334444454444 5


Q ss_pred             CCCcEEEecCCCCcCHHHHHHHHHH
Q psy38           123 NDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       123 ~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .+++++++||++|.|++++|..+..
T Consensus        96 ~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        96 IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CCCeEEEEecCCchhHHHHHhhhcC
Confidence            7889999999999999999998864

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.50  E-value=4e-13  Score=114.54  Aligned_cols=112  Identities=22%  Similarity=0.250  Sum_probs=85.6

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ++..+.+.||||+|+.+|...+..++..+|++|+|+|+++....+....|.....     .+.|+++|+||.|+...   
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~~a---  141 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLPAA---  141 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCcc---
Confidence            5667999999999999999889999999999999999998655555555543322     24688899999998542   


Q ss_pred             CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .  ......++....++   .++.+||++|.|++++|++|.+.+-
T Consensus       142 ~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        142 D--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             c--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            1  12223344444555   3899999999999999999988653

>cd01889 SelB_euk SelB subfamily

Probab=99.50  E-value=2.5e-13  Score=100.33  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=75.3

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR  109 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~  109 (193)
                      +....+.+|||+|+..+..........+|++++|+|+++.........|.  +....   ..|+++|+||+|+.... ..
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~---~~~~iiv~NK~Dl~~~~-~~  138 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL---CKKLIVVLNKIDLIPEE-ER  138 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc---CCCEEEEEECcccCCHH-HH
Confidence            34678999999999765333333456789999999998754433333332  12211   35888999999986411 01


Q ss_pred             ccCHHHHHHH-HH------hCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           110 EVSEAEAKAF-AS------QNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       110 ~v~~~~~~~~-~~------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ....++..+. ..      ..+++++.+||++|.|+++++.++.++|..
T Consensus       139 ~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         139 ERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            1112222221 11      235789999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.49  E-value=1.7e-13  Score=102.21  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      .++.||||+|++.+.......+..+|++++|+|++++.........+..+...   ...|+++|+||.|+..+. .....
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~-~~~~~  158 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEE-QALEN  158 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHH-HHHHH
Confidence            67899999999988777777788899999999998731111111222222221   125788999999985410 00111


Q ss_pred             HHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           113 EAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       113 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .+...++...   .+++++.+||++|.|++++|+++.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            2333344433   257899999999999999999998643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.47  E-value=7.5e-13  Score=109.69  Aligned_cols=126  Identities=14%  Similarity=0.058  Sum_probs=85.6

Q ss_pred             EEEEEEecCCcEEEEEEeeCCCcccc----ccch---hhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcC--
Q psy38            21 FARLVTMRDGARIKLQLWDTAGQERF----RSIT---KSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIE--   87 (193)
Q Consensus        21 ~~~~~~~~~~~~~~l~l~D~~g~~~~----~~~~---~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~--   87 (193)
                      ..-.+.+ ++  ..+.|||++|....    ..+.   -..++.++++|+|+|+++    ++.+.++..|..++..+..  
T Consensus       197 ~lGvv~~-~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l  273 (500)
T PRK12296        197 NLGVVQA-GD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL  273 (500)
T ss_pred             eEEEEEE-CC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc
Confidence            3334555 33  67899999996321    1111   224578999999999985    3456666667767765542  


Q ss_pred             --------CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            88 --------PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        88 --------~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                              ....|+|+|+||+|+.+.   ..+ .+.........+++++.+||+++.|+++++.+|.+.+....
T Consensus       274 ~~~~~~~~l~~kP~IVVlNKiDL~da---~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        274 DGDLGLGDLAERPRLVVLNKIDVPDA---REL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             cccchhhhhcCCCEEEEEECccchhh---HHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence                    235789999999999652   222 12222333445789999999999999999999998876644

>PRK11058 GTPase HflX; Provisional

Probab=99.46  E-value=8.6e-13  Score=108.27  Aligned_cols=126  Identities=20%  Similarity=0.148  Sum_probs=83.2

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCcccc--ccchh------hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERF--RSITK------SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      .|.....+.+ .+. ..+.+|||+|..+.  ..++.      ..++++|++++|+|++++.+++.+..|..-+... ...
T Consensus       232 ld~~~~~i~l-~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~  308 (426)
T PRK11058        232 LDPTLRRIDV-ADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAH  308 (426)
T ss_pred             cCCceEEEEe-CCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccC
Confidence            3555556666 332 25679999997432  22222      2367899999999999988877765544433333 233


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-EEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ..|+++|+||+|+...   . ....   .. ...+.+ ++.+||++|.|++++|+++.+.+.....
T Consensus       309 ~~pvIiV~NKiDL~~~---~-~~~~---~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~~~  366 (426)
T PRK11058        309 EIPTLLVMNKIDMLDD---F-EPRI---DR-DEENKPIRVWLSAQTGAGIPLLFQALTERLSGEVA  366 (426)
T ss_pred             CCCEEEEEEcccCCCc---h-hHHH---HH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhccE
Confidence            5788999999998541   1 1111   11 123444 5889999999999999999998865433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.44  E-value=1.3e-12  Score=95.64  Aligned_cols=112  Identities=21%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      ...+.||||+|..++...+..+++.+|++++|+|++++.+... ..++..+..    ...|+++|+||+|+.... ....
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~-~~~~  134 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEE-DLEE  134 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchh-cHHH
Confidence            4789999999999888888899999999999999987654332 233333332    357899999999986410 0111


Q ss_pred             CHHHHHHHHHh--------------CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           112 SEAEAKAFASQ--------------NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       112 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ......+....              ...+++++||++|.|++++|.++...+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            12233333332              346899999999999999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.44  E-value=3.5e-13  Score=111.11  Aligned_cols=129  Identities=12%  Similarity=0.043  Sum_probs=84.7

Q ss_pred             CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH-HHHHHHHhcCC
Q psy38            10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIEP   88 (193)
Q Consensus        10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~   88 (193)
                      ++....+.++.....+..   ..+.+.||||+|+++|.......+.++|++|+|+|+++.+++..... +...+....  
T Consensus        65 ~e~~rg~Tid~~~~~~~~---~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--  139 (426)
T TIGR00483        65 EERERGVTIDVAHWKFET---DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--  139 (426)
T ss_pred             HHhhcCceEEEEEEEEcc---CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--
Confidence            344455556666666555   44789999999999887666667789999999999998754322111 111222222  


Q ss_pred             CCCeEEEEeeCCCCCCCCC-CCccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHH
Q psy38            89 HRPVFALVGCKLDLLQSGV-PREVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFT  143 (193)
Q Consensus        89 ~~~piilv~nK~Dl~~~~~-~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~  143 (193)
                      ...++++|+||+|+.+... ......++..++++..+     ++++++||++|.|+.+.+.
T Consensus       140 ~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       140 GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            2367889999999954100 00112345556666654     5799999999999997553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.43  E-value=1.3e-12  Score=107.98  Aligned_cols=116  Identities=22%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCChhHHh--hHHHHHHHHH
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITSRASFE--HIPVWMMEAK   83 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~   83 (193)
                      |.+..+.....+.+ ++  ..+.+|||+|.+.        +......++.++|++|+|+|+++..+..  .+..|+..  
T Consensus        33 ~~~t~d~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--  107 (435)
T PRK00093         33 PGVTRDRIYGEAEW-LG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--  107 (435)
T ss_pred             CCCcccceEEEEEE-CC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--
Confidence            33345667677777 66  7789999999876        2233456788999999999998753322  23334332  


Q ss_pred             HhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38            84 RHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        84 ~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                        .   ..|+++|+||+|+.+       ......++ ...++ .++++||.+|.|++++|++++.
T Consensus       108 --~---~~piilv~NK~D~~~-------~~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        108 --S---NKPVILVVNKVDGPD-------EEADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             --c---CCcEEEEEECccCcc-------chhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence              1   478999999999643       11222233 34566 4899999999999999999987

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=4.8e-12  Score=90.37  Aligned_cols=122  Identities=19%  Similarity=0.255  Sum_probs=94.6

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF   93 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi   93 (193)
                      .|+..||....+.  ++  ..+++++||||++|..+|..+.+++.++|++.|.+.+..+ +....+.-+....   .+|+
T Consensus        53 tTva~D~g~~~~~--~~--~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~---~ip~  124 (187)
T COG2229          53 TTVAMDFGSIELD--ED--TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN---PIPV  124 (187)
T ss_pred             eeEeecccceEEc--Cc--ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc---CCCE
Confidence            4667777766543  33  6688999999999999999999999999999999998888 4444444443322   2899


Q ss_pred             EEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            94 ALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ++++||.||...     .+.+...++....  .++.++.+|.++.+..+.+..+...
T Consensus       125 vVa~NK~DL~~a-----~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         125 VVAINKQDLFDA-----LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             EEEeeccccCCC-----CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            999999999763     3445555555443  7899999999999999998888765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.42  E-value=7.8e-13  Score=115.18  Aligned_cols=135  Identities=21%  Similarity=0.253  Sum_probs=90.0

Q ss_pred             eeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc----------cccch-hhhccCccEEEEEE
Q psy38             3 TLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER----------FRSIT-KSYYRNSVGALLVY   64 (193)
Q Consensus         3 sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~-~~~~~~~d~~i~v~   64 (193)
                      ||+|++       ...+.+|. .+.....+.+ ++..  +.+|||+|..+          |..+. ..+++.+|++++|+
T Consensus       465 SLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~-~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilVi  540 (712)
T PRK09518        465 SLLNQLTHEERAVVNDLAGTT-RDPVDEIVEI-DGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLF  540 (712)
T ss_pred             HHHHHHhCccccccCCCCCCC-cCcceeEEEE-CCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEE
Confidence            677777       22334443 6777777777 7755  55999999642          22111 23478899999999


Q ss_pred             eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHHHh----CCCcEEEecCCCCcCHH
Q psy38            65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFASQ----NDILHFETSSRSGFQVE  139 (193)
Q Consensus        65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~  139 (193)
                      |+++..+++++. ++..+..    .+.|+++|+||+|+.+.   .  ..+... .+...    ...+++.+||++|.|++
T Consensus       541 Dat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~---~--~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~  610 (712)
T PRK09518        541 DASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDE---F--RRQRLERLWKTEFDRVTWARRVNLSAKTGWHTN  610 (712)
T ss_pred             ECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCCh---h--HHHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence            999887777664 3344433    24789999999999542   1  111111 12221    13477899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy38           140 NAFTAVTQEIYN  151 (193)
Q Consensus       140 e~f~~i~~~i~~  151 (193)
                      ++|..+.+.+..
T Consensus       611 ~L~~~i~~~~~~  622 (712)
T PRK09518        611 RLAPAMQEALES  622 (712)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>cd00066 G-alpha G protein alpha subunit

Probab=99.42  E-value=2.1e-12  Score=102.46  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             cCCCCCcceeeEEEEEEEecCC--------cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----------h
Q psy38             9 IQISDPTVGVDFFARLVTMRDG--------ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----------A   70 (193)
Q Consensus         9 ~~~~~pt~~~~~~~~~~~~~~~--------~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~   70 (193)
                      .++|.||.. |.....+.. .|        ..+.+.+||++|+...+..|..++.+++++|+|.|+++.          .
T Consensus       131 ~~~y~Pt~~-Dil~~r~~T-~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~n  208 (317)
T cd00066         131 DPDYIPTEQ-DILRARVKT-TGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTN  208 (317)
T ss_pred             CCCCCCChh-Hheeeeccc-CCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcch
Confidence            678888863 554444332 22        357889999999999999999999999999999999873          5


Q ss_pred             HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHHh----------CCCcE
Q psy38            71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFASQ----------NDILH  127 (193)
Q Consensus        71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~~----------~~~~~  127 (193)
                      .+.+....+..+.......+.|++|++||.|+...-             .......+.+..|...          ..+.+
T Consensus       209 rl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~  288 (317)
T cd00066         209 RMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYP  288 (317)
T ss_pred             HHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence            677777777777776555678999999999963310             1112234445444333          23566


Q ss_pred             EEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           128 FETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       128 ~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +.++|.+..++..+|..+.+.|+...
T Consensus       289 ~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         289 HFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             EeccccchHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.40  E-value=9.4e-13  Score=98.21  Aligned_cols=76  Identities=20%  Similarity=0.332  Sum_probs=62.9

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCc-cEEEEEEeCCCh-hHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNS-VGALLVYDITSR-ASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQS  105 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~  105 (193)
                      +....+.+||+||+.+++..+..+++++ +++|+|+|+++. .++..+..|+..+.....  ....|+++|+||.|+..+
T Consensus        45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            4457899999999999998888999999 999999999987 688888777776654322  246899999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01895 EngA2 EngA2 subfamily

Probab=99.39  E-value=2.1e-12  Score=92.95  Aligned_cols=120  Identities=23%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCcccccc----------c-hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS----------I-TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI   86 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~   86 (193)
                      .+.....+.. ++.  .+.+|||+|..+...          . ....+.++|++++|+|++++.+.... .++..+..  
T Consensus        38 ~~~~~~~~~~-~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--  111 (174)
T cd01895          38 RDSIDVPFEY-DGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE--  111 (174)
T ss_pred             cCceeeEEEE-CCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--
Confidence            3455555555 554  467999999753311          1 12356789999999999987665543 23333332  


Q ss_pred             CCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-HHHHhC----CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAK-AFASQN----DILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~~~~~----~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                        ...|+++++||+|+...   .....+... .+....    +.+++++||+++.|++++|.++.+.
T Consensus       112 --~~~~~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         112 --EGKALVIVVNKWDLVEK---DSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             --cCCCEEEEEeccccCCc---cHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence              24788899999998652   112222212 222222    3689999999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00880 Era_like Era (E

Probab=99.39  E-value=2.5e-12  Score=90.87  Aligned_cols=109  Identities=19%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             EEEEEEeeCCCccccccc-------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRSI-------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ...+.+||++|...+...       ...++..+|++++++|.++..+..... |.....    ....|+++|+||.|+..
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~  118 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLP  118 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCC
Confidence            467899999998765433       345788999999999999876555543 333333    23578999999999865


Q ss_pred             CCCCCccCHH---HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           105 SGVPREVSEA---EAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       105 ~~~~~~v~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .   ......   .........+.+++++||.++.|+.++++++.+.
T Consensus       119 ~---~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         119 E---EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             h---hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            2   111111   1122333356799999999999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.39  E-value=2.4e-12  Score=109.21  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=74.8

Q ss_pred             EEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-
Q psy38            34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR-  109 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-  109 (193)
                      .+.||||+|++.|..++..+++.+|++++|+|+++   +.+++.+..    +..    .+.|+++++||+|+....... 
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~  141 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHE  141 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhcc
Confidence            38899999999999999999999999999999987   455554432    121    247899999999996421000 


Q ss_pred             ccC--------HH------------HHHHHHH------------hC--CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           110 EVS--------EA------------EAKAFAS------------QN--DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       110 ~v~--------~~------------~~~~~~~------------~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..+        ..            ...+++.            .+  .++++.+||++|.|++++..++....
T Consensus       142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            000        00            0011111            11  35899999999999999999887543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.38  E-value=5.7e-12  Score=109.86  Aligned_cols=132  Identities=19%  Similarity=0.127  Sum_probs=85.2

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCC
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+|++.      ....|++..+.......+ ++  ..+.+|||+|.+.        +......+++.+|++|+|+|+++
T Consensus       290 SL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~  366 (712)
T PRK09518        290 TLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV  366 (712)
T ss_pred             HHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            5667761      122344444555444455 44  5688999999763        23334567889999999999976


Q ss_pred             hhHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            69 RASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        69 ~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .  +.... .|...+..    ...|+++|+||+|+...       .....++.. .+. ..+++||++|.||+++|++++
T Consensus       367 ~--~~~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~-------~~~~~~~~~-lg~~~~~~iSA~~g~GI~eLl~~i~  432 (712)
T PRK09518        367 G--LTSTDERIVRMLRR----AGKPVVLAVNKIDDQAS-------EYDAAEFWK-LGLGEPYPISAMHGRGVGDLLDEAL  432 (712)
T ss_pred             C--CCHHHHHHHHHHHh----cCCCEEEEEECcccccc-------hhhHHHHHH-cCCCCeEEEECCCCCCchHHHHHHH
Confidence            3  22222 34444432    35799999999998541       111222222 333 467899999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      +.+..
T Consensus       433 ~~l~~  437 (712)
T PRK09518        433 DSLKV  437 (712)
T ss_pred             Hhccc
Confidence            87643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.37  E-value=3.1e-12  Score=105.82  Aligned_cols=126  Identities=21%  Similarity=0.146  Sum_probs=79.7

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccc-----------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSI-----------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI   86 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~   86 (193)
                      .+.....+.. ++  ..+.+|||+|..+....           ...+++.+|++|+|+|++++.+.++. .++..+..  
T Consensus       209 ~~~~~~~~~~-~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~--  282 (435)
T PRK00093        209 RDSIDTPFER-DG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE--  282 (435)
T ss_pred             EEEEEEEEEE-CC--eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH--
Confidence            4555555555 55  45679999996432211           12367889999999999987665554 23333333  


Q ss_pred             CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                        ...|+++|+||+|+.+......+.......+.....++++++||++|.|++++|..+.+....
T Consensus       283 --~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        283 --AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             --cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              247888999999986410000111111111222234699999999999999999998875543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.36  E-value=7.9e-12  Score=106.85  Aligned_cols=129  Identities=19%  Similarity=0.142  Sum_probs=84.4

Q ss_pred             CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcC
Q psy38            11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIE   87 (193)
Q Consensus        11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~   87 (193)
                      +....+.+++....+..+++.  .+.||||||+++|.......+.++|++++|+|+++   +.+.+.+    . +.... 
T Consensus        31 E~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~-il~~l-  102 (614)
T PRK10512         31 EKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----A-ILQLT-  102 (614)
T ss_pred             cccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----H-HHHHc-
Confidence            433333345554455443443  47899999999997777777899999999999987   3333333    2 22222 


Q ss_pred             CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC---CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            88 PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND---ILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        88 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                       ..+++++|+||+|+.+.. ......++..++....+   .+++.+||++|.|++++++.|....
T Consensus       103 -gi~~iIVVlNKiDlv~~~-~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        103 -GNPMLTVALTKADRVDEA-RIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             -CCCeEEEEEECCccCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence             224467999999985410 00111234445554443   6899999999999999999998654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.35  E-value=5.9e-12  Score=93.03  Aligned_cols=137  Identities=19%  Similarity=0.192  Sum_probs=82.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCc----------cccccchhhhccCc---cEEEEEE
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQ----------ERFRSITKSYYRNS---VGALLVY   64 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~~~~~---d~~i~v~   64 (193)
                      ||++++     ...+.++.|..........    ...+.+|||+|.          +.+..+...+++.+   +++++++
T Consensus        39 sli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  114 (196)
T PRK00454         39 SLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLI  114 (196)
T ss_pred             HHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEE
Confidence            566666     2345566654433333332    267899999994          33444445556544   6788889


Q ss_pred             eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38            65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus        65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~  144 (193)
                      |.+++.+..+  .++......   ...|+++++||.|+.+.. ......+....+.......++++||+++.|++++|+.
T Consensus       115 d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~-~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~  188 (196)
T PRK00454        115 DSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKG-ERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAA  188 (196)
T ss_pred             ecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHH-HHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHH
Confidence            8876543322  122222221   247888999999985420 0111122233444444678999999999999999999


Q ss_pred             HHHHH
Q psy38           145 VTQEI  149 (193)
Q Consensus       145 i~~~i  149 (193)
                      |...+
T Consensus       189 i~~~~  193 (196)
T PRK00454        189 IAKWL  193 (196)
T ss_pred             HHHHh
Confidence            87755

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.34  E-value=6.2e-12  Score=103.85  Aligned_cols=117  Identities=20%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             ceeeEEEEEEEecCCcEEEEEEeeCCCcc--------ccccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHh
Q psy38            16 VGVDFFARLVTMRDGARIKLQLWDTAGQE--------RFRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRH   85 (193)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~   85 (193)
                      +..+.....+.+ ++  ..+.+|||+|..        .+......+++.+|++++|+|..+..+..+  +..|+.   . 
T Consensus        33 ~t~d~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~-  105 (429)
T TIGR03594        33 VTRDRKYGDAEW-GG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---K-  105 (429)
T ss_pred             cccCceEEEEEE-CC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---H-
Confidence            334666666676 66  458999999963        334445667899999999999987433222  233332   2 


Q ss_pred             cCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            86 IEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        86 ~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                         ...|+++|+||+|+...   ..    ...+ ....++ +++++||.+|.|++++++++...+-
T Consensus       106 ---~~~piilVvNK~D~~~~---~~----~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       106 ---SGKPVILVANKIDGKKE---DA----VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             ---hCCCEEEEEECccCCcc---cc----cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence               24689999999998652   11    1122 335666 7999999999999999999987663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.34  E-value=5.4e-12  Score=107.38  Aligned_cols=126  Identities=20%  Similarity=0.221  Sum_probs=89.2

Q ss_pred             ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38            16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL   95 (193)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil   95 (193)
                      .|+++..+...+ ....+.+.||||+|+.+|......++..+|++++|+|+++. .+.....|+..+...    +.|+++
T Consensus        48 rGiTI~~~~~~v-~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IV  121 (594)
T TIGR01394        48 RGITILAKNTAI-RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIV  121 (594)
T ss_pred             CCccEEeeeEEE-EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEE
Confidence            345555555455 44568899999999999988889999999999999999863 234455666666553    367789


Q ss_pred             EeeCCCCCCCCCCCccCHHHHHHHHH-------hCCCcEEEecCCCCc----------CHHHHHHHHHHHH
Q psy38            96 VGCKLDLLQSGVPREVSEAEAKAFAS-------QNDILHFETSSRSGF----------QVENAFTAVTQEI  149 (193)
Q Consensus        96 v~nK~Dl~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~e~f~~i~~~i  149 (193)
                      |+||+|+..... ..+ .++..++..       ...++++.+||++|.          |+..+|+.+++.+
T Consensus       122 viNKiD~~~a~~-~~v-~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       122 VINKIDRPSARP-DEV-VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EEECCCCCCcCH-HHH-HHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999865210 111 233333332       235789999999996          7989998888765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.34  E-value=1.9e-11  Score=99.36  Aligned_cols=116  Identities=21%  Similarity=0.113  Sum_probs=83.0

Q ss_pred             EEEEEeeCCCcccccc----ch---hhhccCccEEEEEEeCC---ChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERFRS----IT---KSYYRNSVGALLVYDIT---SRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~----~~---~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D  101 (193)
                      ..+.|+||||..+-..    +.   ...++.++++++|+|++   +.+.++++..|+.++..+.. ....|+++|+||+|
T Consensus       207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD  286 (390)
T PRK12298        207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID  286 (390)
T ss_pred             cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence            4588999999743111    11   23477899999999998   45677778888888877532 23578889999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +...   ..+ .+...++.+..+  .+++.+||+++.|+++++++|.+.+.+.
T Consensus       287 l~~~---~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        287 LLDE---EEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             cCCh---HHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            8641   222 233444555444  4789999999999999999999877553

>PRK10218 GTP-binding protein; Provisional

Probab=99.34  E-value=1.9e-11  Score=104.06  Aligned_cols=129  Identities=15%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV   92 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p   92 (193)
                      +++.|+++..+...+ +...+.+.+|||+|+.+|...+..+++.+|++|+|+|+++....+ ...++..+...    ..|
T Consensus        49 E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~----gip  122 (607)
T PRK10218         49 EKERGITILAKNTAI-KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY----GLK  122 (607)
T ss_pred             cccCceEEEEEEEEE-ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc----CCC
Confidence            456677787777777 667799999999999999999999999999999999998753222 23333333332    367


Q ss_pred             EEEEeeCCCCCCCCCCCccCHHHHHHHHH-------hCCCcEEEecCCCCc----------CHHHHHHHHHHHH
Q psy38            93 FALVGCKLDLLQSGVPREVSEAEAKAFAS-------QNDILHFETSSRSGF----------QVENAFTAVTQEI  149 (193)
Q Consensus        93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~e~f~~i~~~i  149 (193)
                      +++|+||+|+.......  ..++..++..       ...++++.+||.+|.          ++..+|+.|++.+
T Consensus       123 ~IVviNKiD~~~a~~~~--vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        123 PIVVINKVDRPGARPDW--VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             EEEEEECcCCCCCchhH--HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            78999999986532111  1233333321       134789999999998          4777777666554

>cd04163 Era Era subfamily

Probab=99.33  E-value=1.7e-11  Score=87.41  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             cEEEEEEeeCCCcccccc--------chhhhccCccEEEEEEeCCChhHHhhHHHH-HHHHHHhcCCCCCeEEEEeeCCC
Q psy38            31 ARIKLQLWDTAGQERFRS--------ITKSYYRNSVGALLVYDITSRASFEHIPVW-MMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ....+.+|||+|......        .....+..+|++++|+|++++  +.....+ ...+...    ..|+++|+||+|
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~----~~~~iiv~nK~D  122 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--IGEGDEFILELLKKS----KTPVILVLNKID  122 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--cCchHHHHHHHHHHh----CCCEEEEEEchh
Confidence            357789999999754322        234467889999999999986  2233233 3333332    468889999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +...   .....+....+....+ .+++++|++++.|++++|.+|.+.
T Consensus       123 l~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         123 LVKD---KEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             cccc---HHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            8631   2222333334444443 589999999999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.31  E-value=5e-11  Score=90.71  Aligned_cols=117  Identities=20%  Similarity=0.138  Sum_probs=76.4

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCcccccc-------chhhhccCccEEEEEEeCCChh-HHhhHHHHHHH----------
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRS-------ITKSYYRNSVGALLVYDITSRA-SFEHIPVWMME----------   81 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~----------   81 (193)
                      .....+.+ ++  ..+++||++|..+...       ....+++++|++++|+|+++++ ..+.+...++.          
T Consensus        37 ~~~g~~~~-~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~  113 (233)
T cd01896          37 CVPGVLEY-KG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPP  113 (233)
T ss_pred             ceEEEEEE-CC--eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCC
Confidence            33444555 55  6789999999754321       2245788999999999998755 33333222211          


Q ss_pred             ------------------------------HHHhcC------------------------CCCCeEEEEeeCCCCCCCCC
Q psy38            82 ------------------------------AKRHIE------------------------PHRPVFALVGCKLDLLQSGV  107 (193)
Q Consensus        82 ------------------------------i~~~~~------------------------~~~~piilv~nK~Dl~~~~~  107 (193)
                                                    +....+                        ..-.|+++|+||+|+.    
T Consensus       114 ~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~----  189 (233)
T cd01896         114 NITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI----  189 (233)
T ss_pred             eEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC----
Confidence                                          111100                        1125889999999984    


Q ss_pred             CCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       108 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                          ..++...++..  ..++++||+++.|++++|+.+.+.+
T Consensus       190 ----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         190 ----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             ----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                33444455543  4689999999999999999998753

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>smart00275 G_alpha G protein alpha subunit

Probab=99.30  E-value=7.4e-11  Score=94.45  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      +.+.+||++|+...++.|..++.+++++|||.|+++          ...+.+....+..+.......+.|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            678999999999999999999999999999999996          2467777777788887655567899999999998


Q ss_pred             CCCC-CC-----------CccCHHHHHHHHHh-----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38           103 LQSG-VP-----------REVSEAEAKAFASQ-----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       103 ~~~~-~~-----------~~v~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ...- ..           .....+.+.+|...           ..+.++.++|.+..++..+|..+.+.|+....
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            4310 00           00123344443322           22566789999999999999999998887653

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.30  E-value=6.8e-12  Score=91.66  Aligned_cols=128  Identities=14%  Similarity=0.131  Sum_probs=77.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc----------ccccchhhhccC---ccEEEEE
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE----------RFRSITKSYYRN---SVGALLV   63 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~~~~---~d~~i~v   63 (193)
                      +||+|++     ...+.++.|.+.....+.. ++   .+.+|||+|..          .+..+...+++.   ++++++|
T Consensus        32 Stlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~v  107 (179)
T TIGR03598        32 SSLINALTNRKKLARTSKTPGRTQLINFFEV-ND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLL  107 (179)
T ss_pred             HHHHHHHhCCCCcccccCCCCcceEEEEEEe-CC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEE
Confidence            3667776     1234556654444444444 32   58899999952          233344455553   5799999


Q ss_pred             EeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHH
Q psy38            64 YDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVE  139 (193)
Q Consensus        64 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  139 (193)
                      +|.+++.+..+. .++..+..    ...|+++|+||+|+.... ......++..+.....+  ..++++||++|.|++
T Consensus       108 vd~~~~~~~~~~-~~~~~~~~----~~~pviiv~nK~D~~~~~-~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       108 MDIRHPLKELDL-EMLEWLRE----RGIPVLIVLTKADKLKKS-ELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             ecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCCHH-HHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            999875444433 22222322    247899999999985411 01112344444555543  489999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.30  E-value=2.3e-11  Score=100.31  Aligned_cols=126  Identities=14%  Similarity=0.080  Sum_probs=79.2

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV   92 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p   92 (193)
                      .+.+.++.....+..   ..+.+.||||+|+++|.......+..+|++++|+|++++.++.....+...+....  ...+
T Consensus        67 ~rG~T~d~~~~~~~~---~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~  141 (425)
T PRK12317         67 ERGVTIDLAHKKFET---DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQ  141 (425)
T ss_pred             hcCccceeeeEEEec---CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCe
Confidence            344444555555544   45789999999998876655556789999999999987322322222222222222  2357


Q ss_pred             EEEEeeCCCCCCCCCCC-ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHH
Q psy38            93 FALVGCKLDLLQSGVPR-EVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFT  143 (193)
Q Consensus        93 iilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~  143 (193)
                      +++|+||+|+......+ ....++..++....+     ++++.+||++|.|+++.+.
T Consensus       142 iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        142 LIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             EEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            88999999986410000 112244555555544     4799999999999998654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.29  E-value=4.4e-11  Score=104.52  Aligned_cols=135  Identities=14%  Similarity=0.077  Sum_probs=92.5

Q ss_pred             eeeeec---cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc----------hhhhc--cCccEEEEEEeCC
Q psy38             3 TLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI----------TKSYY--RNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~---~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~~--~~~d~~i~v~d~~   67 (193)
                      ||+|++   .....+..|.+...+.-.+ ......+.+||+||..++...          ...++  ..+|++++|+|.+
T Consensus        18 TLfN~Ltg~~~~vgn~pGvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat   96 (772)
T PRK09554         18 TLFNQLTGARQRVGNWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDAS   96 (772)
T ss_pred             HHHHHHhCCCCccCCCCCceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCC
Confidence            566666   2222233344444444344 445578899999998766431          22343  4799999999998


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      +.+.   ..+|..++.+.    +.|+++|+||.|+.+   .+.+ ..+..++.+..+++++.+||.++.|++++.+.+.+
T Consensus        97 ~ler---~l~l~~ql~e~----giPvIvVlNK~Dl~~---~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~  165 (772)
T PRK09554         97 NLER---NLYLTLQLLEL----GIPCIVALNMLDIAE---KQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDR  165 (772)
T ss_pred             cchh---hHHHHHHHHHc----CCCEEEEEEchhhhh---ccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence            7543   23455555543    478999999999864   2333 34566788889999999999999999999998877


Q ss_pred             HH
Q psy38           148 EI  149 (193)
Q Consensus       148 ~i  149 (193)
                      ..
T Consensus       166 ~~  167 (772)
T PRK09554        166 HQ  167 (772)
T ss_pred             hh
Confidence            54

>KOG0462|consensus

Probab=99.29  E-value=4.4e-11  Score=98.07  Aligned_cols=125  Identities=20%  Similarity=0.230  Sum_probs=90.5

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      +...+..+-+.+|+.+.+.++||||+.+|..-....+.-|+++|++.|++...--+.+..++..+..     +..+|.|.
T Consensus       110 IkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVl  184 (650)
T KOG0462|consen  110 IKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVL  184 (650)
T ss_pred             EEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEee
Confidence            3444445555478889999999999999988888889999999999999886544555554444443     35677999


Q ss_pred             eCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        98 nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ||+|++.+.+  +-...+..++......+++.+||++|.|+.+++++|++.+
T Consensus       185 NKIDlp~adp--e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  185 NKIDLPSADP--ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             eccCCCCCCH--HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence            9999987421  1112233333333445899999999999999988888754

>PRK00089 era GTPase Era; Reviewed

Probab=99.28  E-value=2.5e-11  Score=95.39  Aligned_cols=110  Identities=16%  Similarity=0.167  Sum_probs=74.9

Q ss_pred             EEEEEeeCCCccccc--------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            33 IKLQLWDTAGQERFR--------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.||||+|.....        ......+.++|++++|+|+++.  +.....++.....   ....|+++|+||+|+..
T Consensus        53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~  127 (292)
T PRK00089         53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVK  127 (292)
T ss_pred             ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCC
Confidence            789999999975422        1223467899999999999872  2223333322222   22478899999999963


Q ss_pred             CCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           105 SGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .   ..........+....+ ..++.+||+++.|++++++++.+.+.
T Consensus       128 ~---~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        128 D---KEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             C---HHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            1   2222334445555444 58999999999999999999988753

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=1.3e-10  Score=93.97  Aligned_cols=113  Identities=22%  Similarity=0.262  Sum_probs=86.3

Q ss_pred             cCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC
Q psy38            28 RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV  107 (193)
Q Consensus        28 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~  107 (193)
                      .+|..+.++++||||+.+|.--....+.-|.+++++.|++..-.-+.+.+.+..+..     +.-|+.|.||+||+.+. 
T Consensus        71 ~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Ad-  144 (603)
T COG0481          71 KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAAD-  144 (603)
T ss_pred             CCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCC-
Confidence            367899999999999999887777888899999999999986555555555554544     46788999999997741 


Q ss_pred             CCccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           108 PREVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       108 ~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                          +..-..+...-.|+   ..+.+||++|.||++++++|++.+-
T Consensus       145 ----pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         145 ----PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             ----HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence                22223344444554   5788999999999999998887653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.25  E-value=4.5e-11  Score=88.06  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR  109 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~  109 (193)
                      .....+.|+||||+..|.......+..+|++|+|+|+.+..... ....+..+...    ..|+++|.||+|+.... ..
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~----~~p~ivvlNK~D~~~~~-~~  140 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL----GIPIIVVLNKMDLIEKE-LE  140 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT----T-SEEEEEETCTSSHHH-HH
T ss_pred             ccccceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc----ccceEEeeeeccchhhh-HH
Confidence            45588999999999998888888899999999999998753322 23333334433    36788999999985310 00


Q ss_pred             ccCHHHHHHHHHhC------CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           110 EVSEAEAKAFASQN------DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       110 ~v~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .+..+....+.+..      .++++.+||.+|.|++++++.+.+.+
T Consensus       141 ~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  141 EIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            01111111333332      24799999999999999999988753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.24  E-value=4.6e-11  Score=97.93  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=77.8

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      ...+.+||++|+++|...+...+..+|++++|+|+++..........+..+..   ....++++|+||+|+.+... ...
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---~gi~~iIVvvNK~Dl~~~~~-~~~  154 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---IGIKNIVIVQNKIDLVSKEK-ALE  154 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---cCCCeEEEEEEccccCCHHH-HHH
Confidence            36789999999999988777788889999999999864211222222222222   12356889999999864200 011


Q ss_pred             CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           112 SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       112 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..++..++....   +++++.+||++|.|+++++++|...+
T Consensus       155 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       155 NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            123334444432   57899999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.20  E-value=1e-10  Score=95.98  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ..+.||||+|+++|..........+|++++|+|++++    ++.+.+.    .+..   ....|+++|+||+|+.+.. .
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~---~~i~~iiVVlNK~Dl~~~~-~  156 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI---IGIKNIVIVQNKIDLVSKE-R  156 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH---cCCCcEEEEEEeeccccch-h
Confidence            6789999999988765444445567999999999864    2333222    1221   1224678999999986520 0


Q ss_pred             CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .....++...+++.   .+++++.+||++|.|++++|++|...+
T Consensus       157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            00112334444433   247899999999999999999988765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.19  E-value=1.8e-10  Score=86.19  Aligned_cols=121  Identities=18%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF   93 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi   93 (193)
                      +.+..+.....+.. ++  ..+.||||+|+++|.......++.+|++|+|+|+++...-+ ...++. +....  ..+++
T Consensus        61 rg~T~~~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~-~~~~~--~~~~i  133 (208)
T cd04166          61 QGITIDVAYRYFST-PK--RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSY-ILSLL--GIRHV  133 (208)
T ss_pred             CCcCeecceeEEec-CC--ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHH-HHHHc--CCCcE
Confidence            33334444445544 44  56789999999887665666789999999999998753111 112112 22221  22467


Q ss_pred             EEEeeCCCCCCCCCCC-ccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHH
Q psy38            94 ALVGCKLDLLQSGVPR-EVSEAEAKAFASQNDI---LHFETSSRSGFQVENA  141 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~  141 (193)
                      ++|+||.|+....... .....+..++....++   +++.+||++|.|+.+.
T Consensus       134 IvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         134 VVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             EEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            7899999986410000 0112334455555553   5899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.16  E-value=7.9e-10  Score=84.35  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      +......+ ......+.+|||+|+.+|...+..+++.+|++++|+|+++.... ....|+..+...    ..|+++|+||
T Consensus        52 i~~~~~~~-~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~----~~P~iivvNK  125 (237)
T cd04168          52 IFSAVASF-QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL----NIPTIIFVNK  125 (237)
T ss_pred             eeeeeEEE-EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc----CCCEEEEEEC
Confidence            33344444 44568899999999999988888999999999999999875432 234455544432    4788899999


Q ss_pred             CCCCC
Q psy38           100 LDLLQ  104 (193)
Q Consensus       100 ~Dl~~  104 (193)
                      .|+..
T Consensus       126 ~D~~~  130 (237)
T cd04168         126 IDRAG  130 (237)
T ss_pred             ccccC
Confidence            99874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.15  E-value=1.6e-10  Score=82.57  Aligned_cols=127  Identities=19%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc----------cccchhhhcc---CccEEEEEEeCCChh--HHhh
Q psy38            10 QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER----------FRSITKSYYR---NSVGALLVYDITSRA--SFEH   74 (193)
Q Consensus        10 ~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~   74 (193)
                      ..+.++.+.+.....+.. ++   .+.+|||+|...          +......++.   +.+++++++|.+...  ....
T Consensus        26 ~~~~~~~~~t~~~~~~~~-~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~  101 (170)
T cd01876          26 ARTSKTPGKTQLINFFNV-ND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLE  101 (170)
T ss_pred             eeecCCCCcceeEEEEEc-cC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHH
Confidence            345555555444444444 33   789999999432          3333444444   457888999987652  2222


Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH--hCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS--QNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +..|+...       ..|+++|+||+|+.... ..............  ....+++.+||+++.++.+++++|.+.
T Consensus       102 ~~~~l~~~-------~~~vi~v~nK~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         102 MLDWLEEL-------GIPFLVVLTKADKLKKS-ELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHc-------CCCEEEEEEchhcCChH-HHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            33443322       36888999999985411 01111122222222  234689999999999999999999874

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.15  E-value=2.5e-10  Score=86.12  Aligned_cols=116  Identities=17%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhH---Hh---hHHHHHHHHHHhcCCCCC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS---FE---HIPVWMMEAKRHIEPHRP   91 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~   91 (193)
                      .+.....+.. +  ...+.+|||+|+..|.......+..+|++|+|+|+++...   |.   .....+... ..  ....
T Consensus        65 ~d~~~~~~~~-~--~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~  138 (219)
T cd01883          65 IDVGLAKFET-E--KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVK  138 (219)
T ss_pred             eecceEEEee-C--CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCC
Confidence            3444455555 4  4778999999998877666667788999999999987421   11   122222222 22  2236


Q ss_pred             eEEEEeeCCCCCCCCCCCc---cCHHHHHHHHHhC-----CCcEEEecCCCCcCHH
Q psy38            92 VFALVGCKLDLLQSGVPRE---VSEAEAKAFASQN-----DILHFETSSRSGFQVE  139 (193)
Q Consensus        92 piilv~nK~Dl~~~~~~~~---v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  139 (193)
                      |+++|+||.|+........   -..++...+....     +++++.+||++|.|++
T Consensus       139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            8889999999963100000   0011222233333     3579999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.15  E-value=1.3e-10  Score=98.95  Aligned_cols=100  Identities=24%  Similarity=0.346  Sum_probs=78.8

Q ss_pred             EEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            35 LQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        35 l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      +.||||||++.|..++...+..+|++|+|+|+++   ++++..+..    +..    ...|+++++||+|+..       
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~-------  137 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIP-------  137 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCch-------
Confidence            6899999999999988888999999999999987   566655432    221    2478999999999732       


Q ss_pred             CHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38           112 SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                            .++...+.+++++++.++.++.+.|.+++..+......
T Consensus       138 ------~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~  175 (586)
T PRK04004        138 ------GWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSE  175 (586)
T ss_pred             ------hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence                  24444577888999999999999999998887666543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.13  E-value=6.7e-10  Score=99.11  Aligned_cols=106  Identities=22%  Similarity=0.240  Sum_probs=72.2

Q ss_pred             EEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC-C-
Q psy38            35 LQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP-R-  109 (193)
Q Consensus        35 l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~-  109 (193)
                      +.||||+|++.|..+....+..+|++++|+|+++   +.+++.+.    .+..    .+.|+++|+||+|+...... . 
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~  599 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED  599 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence            7999999999998888888889999999999986   44554432    2222    14689999999998532110 0 


Q ss_pred             -c----cC------HHHHH--------HHHH------------h--CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           110 -E----VS------EAEAK--------AFAS------------Q--NDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       110 -~----v~------~~~~~--------~~~~------------~--~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                       .    +.      ..+..        +++.            .  ..++++.+||++|.|++++..++...
T Consensus       600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence             0    00      00000        0111            1  13589999999999999999887654

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.12  E-value=2.7e-10  Score=80.95  Aligned_cols=114  Identities=15%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCcccccc------chhhhc--cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS------ITKSYY--RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      ++...-.+.+ ++  ..+.++|+||.-....      ....++  ...|++|.|.|+++.+   .-.+...++.+.    
T Consensus        35 v~~~~g~~~~-~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~----  104 (156)
T PF02421_consen   35 VEKKEGIFKL-GD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL----  104 (156)
T ss_dssp             SEEEEEEEEE-TT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT----
T ss_pred             eeeeeEEEEe-cC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc----
Confidence            5677777777 55  6788999999533222      223343  5899999999998743   233445555654    


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      ..|+++|.||+|+...   +.+.. ....+.+..+++++.+||.++.|+++++++|
T Consensus       105 g~P~vvvlN~~D~a~~---~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  105 GIPVVVVLNKMDEAER---KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TSSEEEEEETHHHHHH---TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             CCCEEEEEeCHHHHHH---cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            3789999999998541   22222 2456777789999999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0082|consensus

Probab=99.09  E-value=6.3e-10  Score=88.10  Aligned_cols=125  Identities=15%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----------hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----------ASFEHIPVWMMEAKRHIEPHRPVFALVGCKL  100 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  100 (193)
                      +...++++|+|||..-+..|.+.+.+++++|||.++++-          ..+.+....++.|.+..-..+.++||+.||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            337889999999999999999999999999999999862          2344556677888877667789999999999


Q ss_pred             CCCCC-CCC-----------CccCHHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38           101 DLLQS-GVP-----------REVSEAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus       101 Dl~~~-~~~-----------~~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      ||-++ ...           ..-..+++..+...          ..+.+..++|.+..+|+.+|.++.+.|+....+
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK  349 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence            98432 100           11234444444332          235677889999999999999999999886543

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2.8e-09  Score=87.67  Aligned_cols=119  Identities=14%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFAL   95 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piil   95 (193)
                      .+.-..+....+..-.+.|.|||||+-|..|+..-..=+|++|+|.++++   |++.+.+       ... ...+.|+++
T Consensus        41 hIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI-------~ha-k~a~vP~iV  112 (509)
T COG0532          41 HIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI-------NHA-KAAGVPIVV  112 (509)
T ss_pred             EeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH-------HHH-HHCCCCEEE
Confidence            34444445411233568899999999999999888889999999999998   4454443       222 234689999


Q ss_pred             EeeCCCCCCCCCCCccCHHHHHHHHHhCC---------CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            96 VGCKLDLLQSGVPREVSEAEAKAFASQND---------ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +.||+|..+.      .......-..++|         ..++.+||++|.|+++++..++-..-.
T Consensus       113 AiNKiDk~~~------np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         113 AINKIDKPEA------NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             EEecccCCCC------CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence            9999998752      2222222222222         468899999999999999988765433

>KOG0077|consensus

Probab=99.07  E-value=1.3e-10  Score=81.65  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=100.4

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      +|+|.+    ...+.||.-  -.+..+.+ .|  +.++.+|.+|+..-+..|+.|+..+|++++.+|+-+.+.|.+.+.-
T Consensus        35 TLLHMLKdDrl~qhvPTlH--PTSE~l~I-g~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~e  109 (193)
T KOG0077|consen   35 TLLHMLKDDRLGQHVPTLH--PTSEELSI-GG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKE  109 (193)
T ss_pred             hHHHHHccccccccCCCcC--CChHHhee-cC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHH
Confidence            455555    234555542  11234455 55  8899999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH------HHHHhCC-----------CcEEEecCCCCcCHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK------AFASQND-----------ILHFETSSRSGFQVENA  141 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~------~~~~~~~-----------~~~~~~Sa~~~~~i~e~  141 (193)
                      ++.+.........|+++.+||+|.+..     +++++.+      +++...+           +..|.||...+.+-.+.
T Consensus       110 ld~ll~~e~la~vp~lilgnKId~p~a-----~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~  184 (193)
T KOG0077|consen  110 LDALLSDESLATVPFLILGNKIDIPYA-----ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEG  184 (193)
T ss_pred             HHHHHhHHHHhcCcceeecccccCCCc-----ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCcccee
Confidence            888877665677999999999999763     2333322      1222111           35788999999999999


Q ss_pred             HHHHHHH
Q psy38           142 FTAVTQE  148 (193)
Q Consensus       142 f~~i~~~  148 (193)
                      |.|+...
T Consensus       185 fkwl~qy  191 (193)
T KOG0077|consen  185 FKWLSQY  191 (193)
T ss_pred             eeehhhh
Confidence            9988654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.06  E-value=1.6e-09  Score=87.90  Aligned_cols=132  Identities=20%  Similarity=0.187  Sum_probs=92.3

Q ss_pred             eeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCC
Q psy38             3 TLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~   67 (193)
                      ||||.+       ..+..-|. .|.....+.+ +|  +.+++.||+|.++.....        ...++++|.+++|+|.+
T Consensus       232 SLLNaL~~~d~AIVTdI~GTT-RDviee~i~i-~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~  307 (454)
T COG0486         232 SLLNALLGRDRAIVTDIAGTT-RDVIEEDINL-NG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDAS  307 (454)
T ss_pred             HHHHHHhcCCceEecCCCCCc-cceEEEEEEE-CC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            566666       44555555 6899999999 88  778899999987644332        45678999999999999


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .+.+-.+. .    +.. ..+.+.|+++|.||.||.....   .  .   .+....+.+++.+|++++.|++.+.+.|..
T Consensus       308 ~~~~~~d~-~----~~~-~~~~~~~~i~v~NK~DL~~~~~---~--~---~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~  373 (454)
T COG0486         308 QPLDKEDL-A----LIE-LLPKKKPIIVVLNKADLVSKIE---L--E---SEKLANGDAIISISAKTGEGLDALREAIKQ  373 (454)
T ss_pred             CCCchhhH-H----HHH-hcccCCCEEEEEechhcccccc---c--c---hhhccCCCceEEEEecCccCHHHHHHHHHH
Confidence            85222221 1    111 2344678899999999976311   1  1   111123447899999999999999999988


Q ss_pred             HHHHH
Q psy38           148 EIYNR  152 (193)
Q Consensus       148 ~i~~~  152 (193)
                      .+...
T Consensus       374 ~~~~~  378 (454)
T COG0486         374 LFGKG  378 (454)
T ss_pred             HHhhc
Confidence            77766

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.06  E-value=1.5e-09  Score=88.83  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             EEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            24 LVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        24 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      .+.+ +.....+.||||+|+++|..........+|++++|+|+++...-+. ...+..+...   ..+++++++||+|+.
T Consensus        67 ~~~~-~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485        67 HVEY-ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMV  141 (394)
T ss_pred             EEEE-cCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccC
Confidence            3444 4455778899999999886655555677899999999987322221 2222223322   224455789999986


Q ss_pred             CCCCCCccCHHHHHHHHHhCC-----CcEEEecCCCCc
Q psy38           104 QSGVPREVSEAEAKAFASQND-----ILHFETSSRSGF  136 (193)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~  136 (193)
                      +.........++..+++...+     ++++.+||.++.
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       142 DDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            420000111234556666554     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04167 Snu114p Snu114p subfamily

Probab=99.04  E-value=1.3e-09  Score=81.77  Aligned_cols=70  Identities=24%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ++..+.+.+|||+|+.+|......++..+|++++|+|+++..++.. ..|+.....    ...|+++|+||+|+.
T Consensus        67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            3567899999999999998888889999999999999987655432 344444432    237888999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01855 YqeH YqeH

Probab=99.02  E-value=1.8e-09  Score=79.61  Aligned_cols=93  Identities=18%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----
Q psy38            46 FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----  120 (193)
Q Consensus        46 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----  120 (193)
                      +..++..+++++|++++|+|++++..     .|...+...  ....|+++|+||+|+..    ..........+.     
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~----~~~~~~~~~~~~~~~~~   92 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLP----KDKNLVRIKNWLRAKAA   92 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCC----CCCCHHHHHHHHHHHHH
Confidence            46778889999999999999987531     122233222  23478889999999864    222333333333     


Q ss_pred             HhCCC---cEEEecCCCCcCHHHHHHHHHHHH
Q psy38           121 SQNDI---LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       121 ~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ...+.   .++.+||+++.|+++++.++.+.+
T Consensus        93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          93 AGLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             hhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            22333   689999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.00  E-value=1.4e-09  Score=90.04  Aligned_cols=108  Identities=15%  Similarity=0.097  Sum_probs=73.7

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHh-------hHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE-------HIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ......+.+.|++|+++|.......+..+|++|+|+|+++. .|+       .....+..+..   ...+++++++||.|
T Consensus        81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD  156 (447)
T PLN00043         81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMD  156 (447)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEccc
Confidence            44567889999999999988888889999999999999862 232       23332222222   22346788999999


Q ss_pred             CCCCCCCCc---cCHHHHHHHHHhCC-----CcEEEecCCCCcCHHH
Q psy38           102 LLQSGVPRE---VSEAEAKAFASQND-----ILHFETSSRSGFQVEN  140 (193)
Q Consensus       102 l~~~~~~~~---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e  140 (193)
                      +........   -..++...++++.+     ++++.+||.+|.|+.+
T Consensus       157 ~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        157 ATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            852100000   11345666777665     5799999999999864

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.97  E-value=6.6e-09  Score=87.63  Aligned_cols=82  Identities=20%  Similarity=0.137  Sum_probs=58.0

Q ss_pred             eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38            17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALV   96 (193)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv   96 (193)
                      |+.+......+ +...+.+.+|||+|+.+|......++..+|++|+|+|+++...- ....++....    ..+.|++++
T Consensus        64 giSi~~~~~~~-~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~  137 (526)
T PRK00741         64 GISVTSSVMQF-PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTF  137 (526)
T ss_pred             CCceeeeeEEE-EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEE
Confidence            33444444444 44558899999999999887777788999999999999874211 2234443333    235789999


Q ss_pred             eeCCCCCC
Q psy38            97 GCKLDLLQ  104 (193)
Q Consensus        97 ~nK~Dl~~  104 (193)
                      +||.|+..
T Consensus       138 iNK~D~~~  145 (526)
T PRK00741        138 INKLDRDG  145 (526)
T ss_pred             EECCcccc
Confidence            99999864

>PRK12736 elongation factor Tu; Reviewed

Probab=98.97  E-value=6.1e-09  Score=85.17  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGV  107 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~  107 (193)
                      +.....+.|+||+|+++|..........+|++++|+|++....-+ ...++..+...    ..| +|++.||+|+.++  
T Consensus        71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~----g~~~~IvviNK~D~~~~--  143 (394)
T PRK12736         71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV----GVPYLVVFLNKVDLVDD--  143 (394)
T ss_pred             cCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----CCCEEEEEEEecCCcch--
Confidence            334467789999999988765566667899999999998632111 22233333332    245 6789999998641  


Q ss_pred             CCccC---HHHHHHHHHhCC-----CcEEEecCCCCc
Q psy38           108 PREVS---EAEAKAFASQND-----ILHFETSSRSGF  136 (193)
Q Consensus       108 ~~~v~---~~~~~~~~~~~~-----~~~~~~Sa~~~~  136 (193)
                       ....   .++..++....+     ++++.+||.+|.
T Consensus       144 -~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        144 -EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence             1111   234445554443     589999999984

>KOG1145|consensus

Probab=98.97  E-value=9.3e-09  Score=84.76  Aligned_cols=115  Identities=16%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALV   96 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv   96 (193)
                      +.--.+.+++|+  .+.|.||||+.-|..|+..-..-+|++++|..++|.   ++.+.       |.. ....+.|++++
T Consensus       190 IGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~Ea-------Ikh-Ak~A~VpiVvA  259 (683)
T KOG1145|consen  190 IGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEA-------IKH-AKSANVPIVVA  259 (683)
T ss_pred             eceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHH-------HHH-HHhcCCCEEEE
Confidence            333455565774  467999999999999999888999999999999883   33333       332 23567999999


Q ss_pred             eeCCCCCCCCCCCccCHHHHHHHHHh-------CC--CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            97 GCKLDLLQSGVPREVSEAEAKAFASQ-------ND--ILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        97 ~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .||+|.++.      +.+....-...       +|  ++++.+||++|.|++.+-++++-++-
T Consensus       260 inKiDkp~a------~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  260 INKIDKPGA------NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             EeccCCCCC------CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence            999997653      33333222222       22  57999999999999999998877643

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.96  E-value=3.9e-09  Score=79.68  Aligned_cols=69  Identities=28%  Similarity=0.290  Sum_probs=53.9

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ++.+.+.+|||+|+++|......+++.+|++++|+|+++..+.+.. ..+.....    ...|+++|+||.|+.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence            5578999999999999999899999999999999999886554432 22222222    236788999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.96  E-value=1.4e-08  Score=79.72  Aligned_cols=86  Identities=14%  Similarity=0.052  Sum_probs=66.7

Q ss_pred             hccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38            53 YYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS  131 (193)
Q Consensus        53 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  131 (193)
                      .+.++|.+++|+|+.++. ++..+.+|+..+...    +.|+++|+||+||..+     ........+....+.+++.+|
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~ip~iIVlNK~DL~~~-----~~~~~~~~~~~~~g~~v~~vS  145 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----GIEPVIVLTKADLLDD-----EEEELELVEALALGYPVLAVS  145 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----CCCEEEEEEHHHCCCh-----HHHHHHHHHHHhCCCeEEEEE
Confidence            488999999999999887 888888898877653    3677799999999541     111222334455788999999


Q ss_pred             CCCCcCHHHHHHHHHH
Q psy38           132 SRSGFQVENAFTAVTQ  147 (193)
Q Consensus       132 a~~~~~i~e~f~~i~~  147 (193)
                      |+++.|+++++..+..
T Consensus       146 A~~g~gi~~L~~~L~~  161 (287)
T cd01854         146 AKTGEGLDELREYLKG  161 (287)
T ss_pred             CCCCccHHHHHhhhcc
Confidence            9999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.95  E-value=1e-08  Score=76.01  Aligned_cols=111  Identities=16%  Similarity=0.121  Sum_probs=69.8

Q ss_pred             EEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            24 LVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        24 ~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ...+ .....++.|.||+|+..|.......+..+|++++|+|+.....-+ ....+..+....   .+++++|.||.|+.
T Consensus        57 ~~~~-~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~~---~~~iIvviNK~D~~  131 (195)
T cd01884          57 HVEY-ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQVG---VPYIVVFLNKADMV  131 (195)
T ss_pred             eeEe-cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC---CCcEEEEEeCCCCC
Confidence            3344 344567889999999888776677788999999999997642211 223333333321   23477899999985


Q ss_pred             CCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHH
Q psy38           104 QSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVE  139 (193)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  139 (193)
                      .+........++..++....     +++++.+||.+|.|+.
T Consensus       132 ~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         132 DDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence            31000011123344554443     3689999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.93  E-value=1.4e-08  Score=76.90  Aligned_cols=106  Identities=17%  Similarity=0.088  Sum_probs=68.2

Q ss_pred             EEEEEeeCCCccccccchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38            33 IKLQLWDTAGQERFRSITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE  110 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  110 (193)
                      ..+.+.||||+++|.......+.  .+|++++|+|+..... .....++..+...    ..|+++|.||+|+.+.   ..
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~----~ip~ivvvNK~D~~~~---~~  155 (224)
T cd04165          84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL----NIPVFVVVTKIDLAPA---NI  155 (224)
T ss_pred             cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEECccccCH---HH
Confidence            56889999999988654333343  6899999999876432 2223344444433    3678899999998541   11


Q ss_pred             c--CHHHHHHHHH--------------------------hCCCcEEEecCCCCcCHHHHHHHHH
Q psy38           111 V--SEAEAKAFAS--------------------------QNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus       111 v--~~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .  ...+..++..                          ...+++|.+||.+|.|++++...|.
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1  1112222222                          1124899999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01859 MJ1464 MJ1464

Probab=98.93  E-value=5.4e-09  Score=74.61  Aligned_cols=94  Identities=12%  Similarity=0.021  Sum_probs=63.5

Q ss_pred             ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38            47 RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL  126 (193)
Q Consensus        47 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~  126 (193)
                      +.+.+..++++|++++|+|++++....+. .+...+.    ..+.|+++|+||+|+...   ...  .....+....+.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~----~~~~p~iiv~NK~Dl~~~---~~~--~~~~~~~~~~~~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL----ELGKKLLIVLNKADLVPK---EVL--EKWKSIKESEGIP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH----hCCCcEEEEEEhHHhCCH---HHH--HHHHHHHHhCCCc
Confidence            45677888899999999999876433321 2222121    224688899999998431   111  1111333445678


Q ss_pred             EEEecCCCCcCHHHHHHHHHHHHH
Q psy38           127 HFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       127 ~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ++.+||+++.|+++++..+.+.+-
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHHHh
Confidence            999999999999999999987653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.92  E-value=2.3e-08  Score=81.06  Aligned_cols=122  Identities=25%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccc-----------hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhc
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSI-----------TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI   86 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~   86 (193)
                      .|.....+.+ ++++  +.+.||+|-.+-...           .-..+..+|++++|.|++.+.+-++.     .+..+.
T Consensus       214 RD~I~~~~e~-~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-----~ia~~i  285 (444)
T COG1160         214 RDSIDIEFER-DGRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-----RIAGLI  285 (444)
T ss_pred             ccceeeeEEE-CCeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-----HHHHHH
Confidence            5777777777 7755  669999996542211           12356689999999999987655543     222222


Q ss_pred             CCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh----C-CCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            87 EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ----N-DILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~----~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .....++++|.||+|+.+.   ...+.++.+.....    . ..+.+.+||+++.+++++|.++....-
T Consensus       286 ~~~g~~~vIvvNKWDl~~~---~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         286 EEAGRGIVIVVNKWDLVEE---DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             HHcCCCeEEEEEccccCCc---hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            2335788899999998662   22333333322222    2 358999999999999999999877543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.92  E-value=4.5e-09  Score=82.86  Aligned_cols=86  Identities=19%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             ccCccEEEEEEeCCChhHHhh-HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC
Q psy38            54 YRNSVGALLVYDITSRASFEH-IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS  132 (193)
Q Consensus        54 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  132 (193)
                      ..++|++++|+|++++.++.. +.+|+..+...    +.|+++|+||+||..+   .. ............+++++.+||
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~----~ip~iIVlNK~DL~~~---~~-~~~~~~~~~~~~g~~v~~vSA  149 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN----GIKPIIVLNKIDLLDD---LE-EARELLALYRAIGYDVLELSA  149 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC----CCCEEEEEEhHHcCCC---HH-HHHHHHHHHHHCCCeEEEEeC
Confidence            489999999999988765544 46787766542    4677899999999531   11 122334555667889999999


Q ss_pred             CCCcCHHHHHHHHHH
Q psy38           133 RSGFQVENAFTAVTQ  147 (193)
Q Consensus       133 ~~~~~i~e~f~~i~~  147 (193)
                      +++.|+++++..+..
T Consensus       150 ~~g~gi~~L~~~l~g  164 (298)
T PRK00098        150 KEGEGLDELKPLLAG  164 (298)
T ss_pred             CCCccHHHHHhhccC
Confidence            999999999988753

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.92  E-value=8.5e-09  Score=71.91  Aligned_cols=99  Identities=21%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             EEeeCCCc----cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            36 QLWDTAGQ----ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        36 ~l~D~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      .+.||||.    ..+.........++|.++++.|++++.+.-.-     .+...   -..|+|-|.||+|+..    ...
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP-----~fa~~---f~~pvIGVITK~Dl~~----~~~  106 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP-----GFASM---FNKPVIGVITKIDLPS----DDA  106 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc-----hhhcc---cCCCEEEEEECccCcc----chh
Confidence            46899984    23333334455689999999999986432110     11111   1368989999999973    234


Q ss_pred             CHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38           112 SEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus       112 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      ..+.++++.+..|+ .+|++|+.+|+||+++.+.|-
T Consensus       107 ~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  107 NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            66778888888888 789999999999999998863

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12735 elongation factor Tu; Reviewed

Probab=98.91  E-value=1.2e-08  Score=83.44  Aligned_cols=114  Identities=16%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGV  107 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~  107 (193)
                      +.....+.|+||||+++|.......+..+|++++|+|+.+...- ....++..+...    ..| ++++.||+|+.++..
T Consensus        71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~~----gi~~iivvvNK~Dl~~~~~  145 (396)
T PRK12735         71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV----GVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEEEecCCcchHH
Confidence            33446788999999988876666777889999999999864222 222333333322    245 546899999864110


Q ss_pred             CCccCHHHHHHHHHhCC-----CcEEEecCCCCc----------CHHHHHHHHHH
Q psy38           108 PREVSEAEAKAFASQND-----ILHFETSSRSGF----------QVENAFTAVTQ  147 (193)
Q Consensus       108 ~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~----------~i~e~f~~i~~  147 (193)
                      ......++...+....+     ++++.+||.+|.          ++.++++.|..
T Consensus       146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~  200 (396)
T PRK12735        146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS  200 (396)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence            01111234555555543     678999999985          45555555554

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=1e-08  Score=82.34  Aligned_cols=92  Identities=15%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             cchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38            48 SITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL  126 (193)
Q Consensus        48 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~  126 (193)
                      .+.+..+.++|.+++|+|+.++. +...+.+|+..+..    .+.|+++|+||+||...   ..  .....+.....++.
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~---~~--~~~~~~~~~~~g~~  151 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSP---TE--QQQWQDRLQQWGYQ  151 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCCh---HH--HHHHHHHHHhcCCe
Confidence            44566789999999999998765 44456778776633    24677899999999531   11  12222334567889


Q ss_pred             EEEecCCCCcCHHHHHHHHHHH
Q psy38           127 HFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       127 ~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ++.+||.++.|+++++..+...
T Consensus       152 v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        152 PLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEEEcCCCCCHHHHhhhhccc
Confidence            9999999999999999988754

>cd04169 RF3 RF3 subfamily

Probab=98.91  E-value=1.3e-08  Score=78.94  Aligned_cols=79  Identities=16%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      +......+ ......+.+|||+|+.+|.......++.+|++|+|+|+++.... ....++.....    .+.|+++++||
T Consensus        59 i~~~~~~~-~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~----~~~P~iivvNK  132 (267)
T cd04169          59 VTSSVMQF-EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL----RGIPIITFINK  132 (267)
T ss_pred             eEEEEEEE-eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh----cCCCEEEEEEC
Confidence            34444444 55668899999999998887677788999999999999874321 22334333322    34789999999


Q ss_pred             CCCCC
Q psy38           100 LDLLQ  104 (193)
Q Consensus       100 ~Dl~~  104 (193)
                      +|+..
T Consensus       133 ~D~~~  137 (267)
T cd04169         133 LDREG  137 (267)
T ss_pred             CccCC
Confidence            99865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG0705|consensus

Probab=98.91  E-value=1.5e-08  Score=83.45  Aligned_cols=146  Identities=21%  Similarity=0.343  Sum_probs=112.5

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ++|++||    ....+.+.| ..+.+++-+ +|....+.+.|.+|...     ..|-.++|++||||.+.+.++|+.+..
T Consensus        44 talvhr~ltgty~~~e~~e~-~~~kkE~vv-~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~  116 (749)
T KOG0705|consen   44 TALVHRYLTGTYTQDESPEG-GRFKKEVVV-DGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQA  116 (749)
T ss_pred             eeeeeeeccceeccccCCcC-ccceeeEEe-eccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHH
Confidence            5899999    222333444 344555556 89999999999998432     567788999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      +.-.+..+.....+|+++++++ |.......+.+.++.+++++.. ..+.||++++..|.+++.+|..+...++...+.
T Consensus       117 l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  117 LAHEMSSYRNISDLPLILVGTQ-DHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             HHhhcccccccccchHHhhcCc-chhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhh
Confidence            8878877777778899899988 5544433566777777776655 567999999999999999999999988876433

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.90  E-value=7.2e-09  Score=78.42  Aligned_cols=141  Identities=18%  Similarity=0.254  Sum_probs=84.9

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-----chhhhccCccEEEEEEeCCChh---HHhhHHHHHHHHHH
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-----ITKSYYRNSVGALLVYDITSRA---SFEHIPVWMMEAKR   84 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~   84 (193)
                      .||+.++  ...+..  ...+.+++||+||+..+..     .....++++.++|+|+|+.+.+   .+..+...+..+.+
T Consensus        32 ~~T~~ve--~~~v~~--~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~  107 (232)
T PF04670_consen   32 EPTIDVE--KSHVRF--LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ  107 (232)
T ss_dssp             ----SEE--EEEEEC--TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHH
T ss_pred             CCcCCce--EEEEec--CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHH
Confidence            4666433  333332  3457899999999976543     3577899999999999998443   33334445555555


Q ss_pred             hcCCCCCeEEEEeeCCCCCCCCCCCccC---HHHHHHHHHhCC---CcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCCc
Q psy38            85 HIEPHRPVFALVGCKLDLLQSGVPREVS---EAEAKAFASQND---ILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDY  158 (193)
Q Consensus        85 ~~~~~~~piilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~~  158 (193)
                      +  .++..+-++.+|.|+..+.....+.   .+...+.+...+   +.++.+|.-+ ..+-+.|..+++.++++...-+.
T Consensus       108 ~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~~le~  184 (232)
T PF04670_consen  108 Y--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLSTLEN  184 (232)
T ss_dssp             H--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred             h--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHHHHHH
Confidence            4  3467888999999985421111111   122223344455   6788888887 69999999999998877665544


Q ss_pred             cc
Q psy38           159 KV  160 (193)
Q Consensus       159 ~~  160 (193)
                      ..
T Consensus       185 ~L  186 (232)
T PF04670_consen  185 LL  186 (232)
T ss_dssp             CC
T ss_pred             HH
Confidence            33

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1489|consensus

Probab=98.89  E-value=1.5e-08  Score=78.47  Aligned_cols=108  Identities=15%  Similarity=0.208  Sum_probs=79.8

Q ss_pred             EEEEeeCCCcccccc----chhhh---ccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCC
Q psy38            34 KLQLWDTAGQERFRS----ITKSY---YRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDL  102 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~----~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl  102 (193)
                      .+.+-|+||.-+-..    +...|   ++.|+.++||.|++..   +.|+.+...+.++..+.. ....|.++|+||+|+
T Consensus       245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~  324 (366)
T KOG1489|consen  245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL  324 (366)
T ss_pred             eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence            388999999654322    22333   4579999999999998   888888887777777654 456889999999998


Q ss_pred             CCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38           103 LQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .+      -......++++...- .++.+||++++++.++...|-+
T Consensus       325 ~e------ae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  325 PE------AEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             hh------HHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            53      122224566666543 5999999999999999887654

>KOG1707|consensus

Probab=98.88  E-value=1.5e-09  Score=89.75  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=89.4

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-HHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ..+...+.|++....-+.....-++.+|++.++|+++++++++.+ .+|+..+.+..+ ....|||+||||.|+......
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            446689999986655455557778999999999999999999999 559999998764 247899999999998764222


Q ss_pred             CccCHHH-HHHHHHhC-CC-cEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           109 REVSEAE-AKAFASQN-DI-LHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       109 ~~v~~~~-~~~~~~~~-~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                         +.+. ..-+...+ .+ .+++|||++..++.|+|-..-+.++..
T Consensus       134 ---s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  134 ---SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             ---chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence               1121 22233322 24 689999999999999998887776653

>PRK13351 elongation factor G; Reviewed

Probab=98.86  E-value=1.2e-08  Score=89.11  Aligned_cols=69  Identities=23%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ....+.+|||+|+.+|...+..+++.+|++|+|+|+++.........| ..+..    ...|+++|+||.|+..
T Consensus        71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence            357899999999999988889999999999999999987666554444 33332    2478889999999875

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.86  E-value=2.5e-08  Score=81.86  Aligned_cols=115  Identities=21%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      ++.....+.. +  ..++.|+||+|+++|.......+..+|++++|+|+.....-+....|.  +....  ...++++|.
T Consensus        68 id~~~~~~~~-~--~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~--~~~~iivvi  140 (406)
T TIGR02034        68 IDVAYRYFST-D--KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLL--GIRHVVLAV  140 (406)
T ss_pred             eEeeeEEEcc-C--CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHc--CCCcEEEEE
Confidence            4455555544 3  457889999999998766666788999999999997643222222222  22221  134688999


Q ss_pred             eCCCCCCCCCCCccC---HHHHHHHHHhCC---CcEEEecCCCCcCHHHH
Q psy38            98 CKLDLLQSGVPREVS---EAEAKAFASQND---ILHFETSSRSGFQVENA  141 (193)
Q Consensus        98 nK~Dl~~~~~~~~v~---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~  141 (193)
                      ||+|+....  ....   .++...+.+..+   ++++.+||.+|.|+++.
T Consensus       141 NK~D~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       141 NKMDLVDYD--EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             Eecccccch--HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            999986421  1110   122223344433   47999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.85  E-value=2e-08  Score=81.50  Aligned_cols=124  Identities=18%  Similarity=0.093  Sum_probs=81.5

Q ss_pred             cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc--cc-------hhhhccCccEEEEEEeCCChhHHhhHHHHH
Q psy38             9 IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR--SI-------TKSYYRNSVGALLVYDITSRASFEHIPVWM   79 (193)
Q Consensus         9 ~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~   79 (193)
                      .+++.-+. .|..+....+ .+..  +.+.||+|-+...  .+       ....+..||++|||+|....-+  .....+
T Consensus        31 V~D~pGvT-RDr~y~~~~~-~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git--~~D~~i  104 (444)
T COG1160          31 VSDTPGVT-RDRIYGDAEW-LGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT--PADEEI  104 (444)
T ss_pred             eecCCCCc-cCCccceeEE-cCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC--HHHHHH
Confidence            33443333 5677777777 6644  8899999976433  12       2456778999999999876321  122222


Q ss_pred             HHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38            80 MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        80 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..+..   ....|+++|.||+|-..       ..+..-+| .++|+ ..+.+||..|.|++++.++++..+
T Consensus       105 a~~Lr---~~~kpviLvvNK~D~~~-------~e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         105 AKILR---RSKKPVILVVNKIDNLK-------AEELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             HHHHH---hcCCCEEEEEEcccCch-------hhhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence            22232   22478999999999532       22223333 34666 889999999999999999999876

>PRK12288 GTPase RsgA; Reviewed

Probab=98.84  E-value=2e-08  Score=80.57  Aligned_cols=89  Identities=18%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38            54 YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR  133 (193)
Q Consensus        54 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  133 (193)
                      ..++|.+++|++.+...++..+.+|+..+..    ...|+++|+||+||...  ................+++++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~--~~~~~~~~~~~~y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDD--EGRAFVNEQLDIYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCc--HHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3569999999999888899999999875543    23667799999999542  00011122333445678899999999


Q ss_pred             CCcCHHHHHHHHHHH
Q psy38           134 SGFQVENAFTAVTQE  148 (193)
Q Consensus       134 ~~~~i~e~f~~i~~~  148 (193)
                      ++.|+++++..+...
T Consensus       192 tg~GideL~~~L~~k  206 (347)
T PRK12288        192 TGEGLEELEAALTGR  206 (347)
T ss_pred             CCcCHHHHHHHHhhC
Confidence            999999999998753

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.83  E-value=1.6e-08  Score=81.69  Aligned_cols=95  Identities=21%  Similarity=0.251  Sum_probs=70.1

Q ss_pred             ccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----H
Q psy38            43 QERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----A  118 (193)
Q Consensus        43 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~  118 (193)
                      .++|..+...+++.++++++|+|+.+..     ..|...+.+...  ..|+++|+||+|+..    +.+..+...    +
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~--~~piilV~NK~DLl~----k~~~~~~~~~~l~~  118 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG--GNPVLLVGNKIDLLP----KSVNLSKIKEWMKK  118 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC--CCCEEEEEEchhhCC----CCCCHHHHHHHHHH
Confidence            4578888888999999999999987643     335555655532  468889999999864    233333433    3


Q ss_pred             HHHhCCC---cEEEecCCCCcCHHHHHHHHHHH
Q psy38           119 FASQNDI---LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       119 ~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +++..++   .++.+||+++.|++++|..+.+.
T Consensus       119 ~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       119 RAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            4566676   48999999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.81  E-value=2.5e-08  Score=83.34  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      ++.....+..   ...++.|+||||+++|.......+..+|++++|+|++....-+....|.  +.....  ..++++|.
T Consensus        95 id~~~~~~~~---~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg--~~~iIvvv  167 (474)
T PRK05124         95 IDVAYRYFST---EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLG--IKHLVVAV  167 (474)
T ss_pred             eEeeEEEecc---CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhC--CCceEEEE
Confidence            3444444444   3467889999999988665555678999999999997642211112221  222211  24788999


Q ss_pred             eCCCCCCCCCCCccCH----HHHHHHHHhC----CCcEEEecCCCCcCHHHH
Q psy38            98 CKLDLLQSGVPREVSE----AEAKAFASQN----DILHFETSSRSGFQVENA  141 (193)
Q Consensus        98 nK~Dl~~~~~~~~v~~----~~~~~~~~~~----~~~~~~~Sa~~~~~i~e~  141 (193)
                      ||+|+.+.   .....    ++...+....    .++++.+||++|.|++++
T Consensus       168 NKiD~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        168 NKMDLVDY---SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             Eeeccccc---hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            99998641   11111    1222333333    368999999999999865

>COG1159 Era GTPase [General function prediction only]

Probab=98.80  E-value=4.5e-08  Score=75.44  Aligned_cols=113  Identities=14%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             cEEEEEEeeCCCccccc--------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            31 ARIKLQLWDTAGQERFR--------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      .+.++.|.||||..+-.        ......+.++|+++||.|++..  +..-..|+-+....   ...|++++.||+|.
T Consensus        52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~  126 (298)
T COG1159          52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDK  126 (298)
T ss_pred             CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEcccc
Confidence            46889999999954321        1234568899999999999873  22233333333322   34688899999998


Q ss_pred             CCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           103 LQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ...   ...-......+...... .++.+||++|.|++.+.+.+...+-+
T Consensus       127 ~~~---~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         127 VKP---KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             CCc---HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            652   22112333333333444 89999999999999988877765433

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.79  E-value=3.7e-08  Score=81.70  Aligned_cols=112  Identities=11%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      ..+.|.|+||++.|..........+|++++|.|+++..........+. +....  ...++++|.||+|+.+.. ...-.
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~-~~~~~  192 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA-QAQDQ  192 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH-HHHHH
Confidence            367899999999987766677789999999999986311111122222 22222  235788999999986410 00011


Q ss_pred             HHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           113 EAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       113 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .++..++...   .+.+++.+||.+|.|++++++.|.+.
T Consensus       193 ~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        193 YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence            2233333332   35689999999999999998888763

>PRK12740 elongation factor G; Reviewed

Probab=98.78  E-value=7.7e-08  Score=83.82  Aligned_cols=78  Identities=21%  Similarity=0.163  Sum_probs=57.2

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      +.....+.+ +  .+.+.+|||+|+.++...+..++..+|++++++|++..........| ..+..    .+.|+++|+|
T Consensus        49 ~~~~~~~~~-~--~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~N  120 (668)
T PRK12740         49 TSAATTCEW-K--GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVN  120 (668)
T ss_pred             eeceEEEEE-C--CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEE
Confidence            344445555 4  47899999999998877788889999999999999886555444333 23332    2478889999


Q ss_pred             CCCCCC
Q psy38            99 KLDLLQ  104 (193)
Q Consensus        99 K~Dl~~  104 (193)
                      |+|+..
T Consensus       121 K~D~~~  126 (668)
T PRK12740        121 KMDRAG  126 (668)
T ss_pred             CCCCCC
Confidence            999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.78  E-value=9.4e-08  Score=75.83  Aligned_cols=53  Identities=11%  Similarity=0.131  Sum_probs=36.1

Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHH-HHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFT-AVTQEI  149 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~-~i~~~i  149 (193)
                      ..|+|+|+||.|+...   ..    ....+.... ...++.+||+.+.++.++.+ .+++.+
T Consensus       214 ~KPvI~VlNK~Dl~~~---~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l  268 (318)
T cd01899         214 SKPMVIAANKADIPDA---EN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD  268 (318)
T ss_pred             CCcEEEEEEHHHccCh---HH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence            3699999999997431   11    111222233 45799999999999999887 466654

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.72  E-value=4.4e-08  Score=84.74  Aligned_cols=115  Identities=18%  Similarity=0.117  Sum_probs=70.8

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      ++.....+.. ++  .++.|+||+|+++|.......+..+|++++|+|++....-+....+ ..+...   ...++++|.
T Consensus        92 id~~~~~~~~-~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~---~~~~iivvv  164 (632)
T PRK05506         92 IDVAYRYFAT-PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL---GIRHVVLAV  164 (632)
T ss_pred             ceeeeeEEcc-CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh---CCCeEEEEE
Confidence            3444445444 43  5677999999998866555678899999999999764322222222 112221   235788999


Q ss_pred             eCCCCCCCCCCCcc--CHHHHHHHHHhCC---CcEEEecCCCCcCHHH
Q psy38            98 CKLDLLQSGVPREV--SEAEAKAFASQND---ILHFETSSRSGFQVEN  140 (193)
Q Consensus        98 nK~Dl~~~~~~~~v--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e  140 (193)
                      ||+|+.+.. ....  ...+..++....+   ++++.+||++|.|+++
T Consensus       165 NK~D~~~~~-~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        165 NKMDLVDYD-QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             Eecccccch-hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            999985410 0100  1122333444544   4689999999999984

>PRK13768 GTPase; Provisional

Probab=98.68  E-value=1e-07  Score=73.46  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             EEEEeeCCCcccc---ccchhhhccC-----ccEEEEEEeCCChhHHhhH--HHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            34 KLQLWDTAGQERF---RSITKSYYRN-----SVGALLVYDITSRASFEHI--PVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        34 ~l~l~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      .+.+||++|+.+.   +..++.+++.     .+++++++|+....+..+.  ..|+.......  .+.|+++|.||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhc
Confidence            5789999998663   3334333332     8999999999654332222  22332222211  247888999999986


Q ss_pred             CCCCCCccCH--H------------------HHH---HHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           104 QSGVPREVSE--A------------------EAK---AFASQND--ILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       104 ~~~~~~~v~~--~------------------~~~---~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..........  .                  ...   +..+..+  .+++.+|++++.|++++..+|.+.+
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            5211000000  0                  000   1122223  4889999999999999999997755

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.66  E-value=1.6e-07  Score=76.79  Aligned_cols=119  Identities=17%  Similarity=0.155  Sum_probs=86.6

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RASFEHIPVWMMEAKRHIEPHRPVFALVGCKL  100 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  100 (193)
                      ....+.++|++|+...++.|..++.+++++|||.++++          ...+.+....++.+.........|++|+.||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            34678999999999999999999999999999999864          13466667777888776555688999999999


Q ss_pred             CCCCC----CC----------CC-ccCHHHHHHHHHh------------CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           101 DLLQS----GV----------PR-EVSEAEAKAFASQ------------NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       101 Dl~~~----~~----------~~-~v~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+-..    .+          +. .-..+.+..|...            ..+.++.++|.+..++..+|..+.+.|
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            97321    11          01 1234555555443            113566899999999999999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0090|consensus

Probab=98.66  E-value=4.5e-07  Score=66.70  Aligned_cols=113  Identities=15%  Similarity=0.322  Sum_probs=78.9

Q ss_pred             EEEeeCCCccccccchhhhcc---CccEEEEEEeCCC-hhHHhhHHHHHHHHHHhc--CCCCCeEEEEeeCCCCCCCCCC
Q psy38            35 LQLWDTAGQERFRSITKSYYR---NSVGALLVYDITS-RASFEHIPVWMMEAKRHI--EPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        35 l~l~D~~g~~~~~~~~~~~~~---~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      +++.|.||+.+.+.....+++   .+-++|||.|... .....++..++-++....  ..+.+|++++.||.|+..+.+.
T Consensus        84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~  163 (238)
T KOG0090|consen   84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTA  163 (238)
T ss_pred             eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcH
Confidence            789999999998887777777   7899999999864 334566666666666655  3678999999999999654322


Q ss_pred             CccCH-------------------------------HHHHHH--H--HhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           109 REVSE-------------------------------AEAKAF--A--SQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       109 ~~v~~-------------------------------~~~~~~--~--~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ..+..                               .++..|  .  ....+.+.++|++++ +++++-+|+.+.
T Consensus       164 ~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  164 EKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            22211                               111111  1  112245888999988 999999998764

>COG2262 HflX GTPases [General function prediction only]

Probab=98.65  E-value=6.4e-07  Score=71.90  Aligned_cols=131  Identities=19%  Similarity=0.145  Sum_probs=83.5

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      |-.++.+.+++|.  .+-+-||-|--+         |++... -...+|.++.|.|++++...+.+..-..-+.+ .+-.
T Consensus       228 dpttR~~~l~~g~--~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~  303 (411)
T COG2262         228 DPTTRRIELGDGR--KVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAE-IGAD  303 (411)
T ss_pred             cCceeEEEeCCCc--eEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCC
Confidence            3444566664554  466899988533         222111 13479999999999998655555443333333 3344


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCCcccc
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVE  161 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~~~~~  161 (193)
                      .+|+|+|.||+|+..+   . .   ....+..... ..+.+||++|.|++.++..|.+.+-..........+
T Consensus       304 ~~p~i~v~NKiD~~~~---~-~---~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp  367 (411)
T COG2262         304 EIPIILVLNKIDLLED---E-E---ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELP  367 (411)
T ss_pred             CCCEEEEEecccccCc---h-h---hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcC
Confidence            5899999999997542   1 1   1111111112 578899999999999999999988876655544444

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.64  E-value=3.6e-07  Score=71.09  Aligned_cols=79  Identities=18%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      ++.....+.+ +  ..++.+|||||+.++...+..+++.+|++|+|+|+.+...-. ...++..+...    +.|++++.
T Consensus        52 i~~~~~~~~~-~--~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~----~~p~ivvi  123 (270)
T cd01886          52 IQSAATTCFW-K--DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY----NVPRIAFV  123 (270)
T ss_pred             eeccEEEEEE-C--CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc----CCCEEEEE
Confidence            3444444444 3  478899999999888888888999999999999997742211 12333333332    36888999


Q ss_pred             eCCCCCC
Q psy38            98 CKLDLLQ  104 (193)
Q Consensus        98 nK~Dl~~  104 (193)
                      ||.|+.+
T Consensus       124 NK~D~~~  130 (270)
T cd01886         124 NKMDRTG  130 (270)
T ss_pred             ECCCCCC
Confidence            9999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK09866 hypothetical protein; Provisional

Probab=98.63  E-value=4.4e-07  Score=77.06  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             EEEEEEeeCCCcccc-----ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38            32 RIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  106 (193)
                      ...+.|.||||...-     .......+..+|+++||+|.+...+..+ ....+.+...  ....|+++|.||+|+.+. 
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dr-  304 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDR-  304 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCc-
Confidence            356789999997542     2233457889999999999987433332 1223333322  112589999999998531 


Q ss_pred             CCCccCHHHHHHHHH----hCC---CcEEEecCCCCcCHHHHHHHHHH
Q psy38           107 VPREVSEAEAKAFAS----QND---ILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       107 ~~~~v~~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                        .....+....+..    ...   ..+|.+||+.|.|+++++..|..
T Consensus       305 --eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        305 --NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             --ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence              1112334444422    112   26999999999999999999887

>PRK00049 elongation factor Tu; Reviewed

Probab=98.60  E-value=7.1e-07  Score=73.14  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=64.3

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLLQSGV  107 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~  107 (193)
                      +.....+.|.||||+.+|.......+..+|++++|+|+..... .....++..+...    ..|++ ++.||.|+.+.  
T Consensus        71 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~~~~--  143 (396)
T PRK00049         71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDD--  143 (396)
T ss_pred             cCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCCcch--
Confidence            3344677899999998876666677889999999999976422 2223333333332    35654 68999998541  


Q ss_pred             CCcc---CHHHHHHHHHhC-----CCcEEEecCCCCcC
Q psy38           108 PREV---SEAEAKAFASQN-----DILHFETSSRSGFQ  137 (193)
Q Consensus       108 ~~~v---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~  137 (193)
                       ...   ...+...+....     .++++.+||.++.+
T Consensus       144 -~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        144 -EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence             111   112333444332     36899999998753

>TIGR00503 prfC peptide chain release factor 3

Probab=98.59  E-value=2.8e-07  Score=77.91  Aligned_cols=82  Identities=18%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38            17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALV   96 (193)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv   96 (193)
                      |+.+......+ +...+.+.+|||+|+..|......++..+|++|+|+|+++.. ......++.....    ...|++++
T Consensus        65 gisi~~~~~~~-~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~~Piivv  138 (527)
T TIGR00503        65 GISITTSVMQF-PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL----RDTPIFTF  138 (527)
T ss_pred             CCcEEEEEEEE-eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh----cCCCEEEE
Confidence            44455555555 556689999999999988776677889999999999998731 1122344433322    34789999


Q ss_pred             eeCCCCCC
Q psy38            97 GCKLDLLQ  104 (193)
Q Consensus        97 ~nK~Dl~~  104 (193)
                      +||+|+..
T Consensus       139 iNKiD~~~  146 (527)
T TIGR00503       139 MNKLDRDI  146 (527)
T ss_pred             EECccccC
Confidence            99999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.59  E-value=2.5e-07  Score=77.27  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR  109 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~  109 (193)
                      ....+.|+|++|+++|.......+..+|++++|+|+.+...-+ ...++..+...    ..| ++++.||.|+.+.....
T Consensus       142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~  216 (478)
T PLN03126        142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV----GVPNMVVFLNKQDQVDDEELL  216 (478)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEecccccCHHHHH
Confidence            3457889999999998776677778899999999988643222 23333333332    245 77899999985410000


Q ss_pred             ccCHHHHHHHHHhC-----CCcEEEecCCCCcCH
Q psy38           110 EVSEAEAKAFASQN-----DILHFETSSRSGFQV  138 (193)
Q Consensus       110 ~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i  138 (193)
                      ....++...+.+..     +++++.+|+.++.++
T Consensus       217 ~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        217 ELVELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence            11122444555443     468999999988543

>CHL00071 tufA elongation factor Tu

Probab=98.58  E-value=4.2e-07  Score=74.79  Aligned_cols=103  Identities=17%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR  109 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~  109 (193)
                      ...++.|.||||+.+|.......+..+|++++|+|+..... ......+..+...    ..| ++++.||.|+.+.....
T Consensus        73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~----g~~~iIvvvNK~D~~~~~~~~  147 (409)
T CHL00071         73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV----GVPNIVVFLNKEDQVDDEELL  147 (409)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEccCCCCHHHHH
Confidence            44577899999998887666677889999999999976422 1222333333322    246 77899999986421000


Q ss_pred             ccCHHHHHHHHHhCC-----CcEEEecCCCCcCH
Q psy38           110 EVSEAEAKAFASQND-----ILHFETSSRSGFQV  138 (193)
Q Consensus       110 ~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  138 (193)
                      ....++...+.+..+     ++++.+||.+|.|+
T Consensus       148 ~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        148 ELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            111234445554433     68999999998754

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.56  E-value=3.9e-07  Score=67.61  Aligned_cols=113  Identities=12%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             EEEEEeeCCCccccccchhh-----hccCccEEEEEEeCCChhHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKS-----YYRNSVGALLVYDITSRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  106 (193)
                      ..+.+|||+|..........     .+.++|+++++.+.    +|.... .|+..+...    ..|+++|+||+|+....
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~  123 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSN  123 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhh
Confidence            36899999997543222222     36778998887432    344443 455555543    36888999999984310


Q ss_pred             CC-Ccc---CH----HHHHHHH----HhCC---CcEEEecCC--CCcCHHHHHHHHHHHHHHHh
Q psy38           107 VP-REV---SE----AEAKAFA----SQND---ILHFETSSR--SGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       107 ~~-~~v---~~----~~~~~~~----~~~~---~~~~~~Sa~--~~~~i~e~f~~i~~~i~~~~  153 (193)
                      .. ...   ..    ++.++.+    ...+   .++|.+|+.  .+.++..+.+.++..+-+..
T Consensus       124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            00 000   11    1111222    2222   378999998  57899999999988776643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01850 CDC_Septin CDC/Septin

Probab=98.55  E-value=3.6e-07  Score=71.32  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc--------------------------cchhhhcc--CccEEEEE
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR--------------------------SITKSYYR--NSVGALLV   63 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------------------------~~~~~~~~--~~d~~i~v   63 (193)
                      +.+|++.+.....+.. +|..+.+.+|||+|.....                          ..+...+.  .+|+++++
T Consensus        43 ~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~  121 (276)
T cd01850          43 IDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF  121 (276)
T ss_pred             cCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence            5677777777777777 8888999999999942211                          11113344  36777777


Q ss_pred             EeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38            64 YDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR  133 (193)
Q Consensus        64 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  133 (193)
                      ++.+.. .+... ...+..+..     ..|+++|+||+|+.... ..........+.+..+++.+|.....
T Consensus       122 i~~~~~-~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~~~-e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         122 IEPTGH-GLKPLDIEFMKRLSK-----RVNIIPVIAKADTLTPE-ELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             EeCCCC-CCCHHHHHHHHHHhc-----cCCEEEEEECCCcCCHH-HHHHHHHHHHHHHHHcCCceECCCCC
Confidence            776541 12111 222333322     47899999999985410 11233455667777789998876654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.53  E-value=8.9e-07  Score=73.56  Aligned_cols=109  Identities=13%  Similarity=0.058  Sum_probs=68.6

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HH---hhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SF---EHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      ......+.|+||||+.+|.......+..+|++++|+|++...   .|   ....+.+..+...   ..+.+|++.||.|.
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~  157 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDD  157 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccc
Confidence            334578899999999999877777788999999999998642   11   1222222223322   22457799999995


Q ss_pred             CCC-CCCC--ccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHH
Q psy38           103 LQS-GVPR--EVSEAEAKAFASQN-----DILHFETSSRSGFQVEN  140 (193)
Q Consensus       103 ~~~-~~~~--~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e  140 (193)
                      ... ....  .-..++..++....     .++++.+|+.+|.|+.+
T Consensus       158 ~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        158 KTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            320 0000  01123333343333     36799999999999964

>PLN03127 Elongation factor Tu; Provisional

Probab=98.53  E-value=9.2e-07  Score=73.43  Aligned_cols=126  Identities=14%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38            11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR   90 (193)
Q Consensus        11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~   90 (193)
                      +..+.+.++.....+   +....++.|.||||+.+|..........+|++++|+|+++...-+ ....+..+...    .
T Consensus       105 E~~rGiTi~~~~~~~---~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~----g  176 (447)
T PLN03127        105 EKARGITIATAHVEY---ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV----G  176 (447)
T ss_pred             HhhcCceeeeeEEEE---cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----C
Confidence            333444444444443   334467889999999887665555667899999999987642211 22223333322    3


Q ss_pred             Ce-EEEEeeCCCCCCCCCCCccC---HHHHHHHHHhC-----CCcEEEecCC---CCcC-------HHHHHHHHHH
Q psy38            91 PV-FALVGCKLDLLQSGVPREVS---EAEAKAFASQN-----DILHFETSSR---SGFQ-------VENAFTAVTQ  147 (193)
Q Consensus        91 ~p-iilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~-----~~~~~~~Sa~---~~~~-------i~e~f~~i~~  147 (193)
                      .| ++++.||+|+.++   ....   ..+..++....     .++++.+|+.   ++.|       +.++++++..
T Consensus       177 ip~iIvviNKiDlv~~---~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~  249 (447)
T PLN03127        177 VPSLVVFLNKVDVVDD---EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE  249 (447)
T ss_pred             CCeEEEEEEeeccCCH---HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence            56 5688999998641   1111   11222333322     3578888876   4444       4555555544

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.51  E-value=2.4e-07  Score=67.45  Aligned_cols=75  Identities=24%  Similarity=0.415  Sum_probs=52.7

Q ss_pred             cEEEEEEeeCCCccccccchhh---hccCccEEEEEEeCCC-hhHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKS---YYRNSVGALLVYDITS-RASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~---~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~  104 (193)
                      ..-.+.+.|+||+.+.+.....   +..++-++|||.|.+. ...+.++..++-++.....  ...+|++|++||.|+..
T Consensus        47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            3456889999999987764333   5788999999999975 4466677666666655443  56799999999999966


Q ss_pred             C
Q psy38           105 S  105 (193)
Q Consensus       105 ~  105 (193)
                      +
T Consensus       127 A  127 (181)
T PF09439_consen  127 A  127 (181)
T ss_dssp             -
T ss_pred             c
Confidence            4

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.48  E-value=1.8e-06  Score=70.40  Aligned_cols=126  Identities=16%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38            16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL   95 (193)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil   95 (193)
                      -|+.+..+.-.+ +.+.+++.+.||+|+..|.--.+..+.=+|+++++.|+.+.. +-..+-.+.....   ..-.|| +
T Consensus        52 RGITILaKnTav-~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PI-V  125 (603)
T COG1217          52 RGITILAKNTAV-NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPI-V  125 (603)
T ss_pred             cCcEEEecccee-ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcE-E
Confidence            355566565555 556699999999999999888888888899999999998732 2222222222332   223576 8


Q ss_pred             EeeCCCCCCCCCCCccCHHHHHHHHHh-------CCCcEEEecCCCCc----------CHHHHHHHHHHHH
Q psy38            96 VGCKLDLLQSGVPREVSEAEAKAFASQ-------NDILHFETSSRSGF----------QVENAFTAVTQEI  149 (193)
Q Consensus        96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~----------~i~e~f~~i~~~i  149 (193)
                      |.||+|.+.+.+..  -.++...+.-.       ++++++..|+..|.          +...+|+.|++++
T Consensus       126 VvNKiDrp~Arp~~--Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         126 VINKIDRPDARPDE--VVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             EEeCCCCCCCCHHH--HHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            99999997753222  12333333322       56789999988764          5666777666654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.47  E-value=4.2e-07  Score=61.75  Aligned_cols=80  Identities=18%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38            46 FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI  125 (193)
Q Consensus        46 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~  125 (193)
                      +......++++++++++||+.++.++++.+  |...+.... ..+.|+++++||.|+.+.   ..+..+++..       
T Consensus        36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~---~~~~~~~~~~-------  102 (124)
T smart00010       36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEE---RQVATEEGLE-------  102 (124)
T ss_pred             hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhh---CcCCHHHHHH-------
Confidence            334456678889999999999999998766  877776543 446788899999998542   2344444444       


Q ss_pred             cEEEecCCCCcCHH
Q psy38           126 LHFETSSRSGFQVE  139 (193)
Q Consensus       126 ~~~~~Sa~~~~~i~  139 (193)
                       ++++|++++.|+.
T Consensus       103 -~~~~s~~~~~~~~  115 (124)
T smart00010      103 -FAETSAKTPEEGE  115 (124)
T ss_pred             -HHHHhCCCcchhh
Confidence             3457899999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.5e-06  Score=69.91  Aligned_cols=131  Identities=15%  Similarity=0.028  Sum_probs=80.2

Q ss_pred             eeeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHhhHHHHHHH
Q psy38             5 LYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFEHIPVWMME   81 (193)
Q Consensus         5 l~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~   81 (193)
                      +++..++-..-+.++.....+   ....+.+.+.|++|+..|.........++|++|+|.|+.+.+   .|.--....+.
T Consensus        60 lD~tkeERerGvTi~~~~~~f---et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH  136 (428)
T COG5256          60 LDKTKEERERGVTIDVAHSKF---ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH  136 (428)
T ss_pred             ecCChhHHhcceEEEEEEEEe---ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH
Confidence            333333333333334444444   445678999999999999887788888999999999998753   22111111111


Q ss_pred             HHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----HHHHhCC-----CcEEEecCCCCcCHHHH
Q psy38            82 AKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----AFASQND-----ILHFETSSRSGFQVENA  141 (193)
Q Consensus        82 i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~i~e~  141 (193)
                      +.-.....-.-+|++.||.|+.+   .++-..++..    .+.+..|     ++|+.+|+..|.|+.+.
T Consensus       137 ~~La~tlGi~~lIVavNKMD~v~---wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         137 AFLARTLGIKQLIVAVNKMDLVS---WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHhcCCceEEEEEEcccccc---cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            11111223456779999999976   3333333322    2444433     56999999999998754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.44  E-value=1.8e-06  Score=67.15  Aligned_cols=100  Identities=18%  Similarity=0.121  Sum_probs=64.1

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      ...+.+|||+|+.++......++..+|++++|+|+++.........| ..+..    ...|+++|+||.|+...     .
T Consensus        63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~~~-----~  132 (268)
T cd04170          63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRERA-----D  132 (268)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccCCC-----C
Confidence            46789999999988877788889999999999999876544333333 22332    24688899999998652     1


Q ss_pred             CHHHHHHHHHhCCCcEE--EecCCCCcCHHHH
Q psy38           112 SEAEAKAFASQNDILHF--ETSSRSGFQVENA  141 (193)
Q Consensus       112 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~e~  141 (193)
                      ..+...++....+..++  .++..++.++..+
T Consensus       133 ~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~  164 (268)
T cd04170         133 FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGV  164 (268)
T ss_pred             HHHHHHHHHHHhCCCeEEEEecccCCCceeEE
Confidence            22223334444454433  3344554444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.44  E-value=1.1e-06  Score=76.80  Aligned_cols=79  Identities=19%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      ++.....+.+ +  ..++.||||+|+.++......+++.+|++++|+|+++....+.. .++..+...    ..|+++|+
T Consensus        63 i~~~~~~~~~-~--~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~----~~p~ivvi  134 (689)
T TIGR00484        63 ITSAATTVFW-K--GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY----EVPRIAFV  134 (689)
T ss_pred             EecceEEEEE-C--CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc----CCCEEEEE
Confidence            3444455555 4  47889999999998877788899999999999999875444433 233333322    46888999


Q ss_pred             eCCCCCC
Q psy38            98 CKLDLLQ  104 (193)
Q Consensus        98 nK~Dl~~  104 (193)
                      ||+|+..
T Consensus       135 NK~D~~~  141 (689)
T TIGR00484       135 NKMDKTG  141 (689)
T ss_pred             ECCCCCC
Confidence            9999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12739 elongation factor G; Reviewed

Probab=98.43  E-value=3.3e-06  Score=73.92  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV   92 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p   92 (193)
                      .+.+.++.....+.+ ++  .++.|+||+|+.+|...+...+..+|++|+|+|+.+...-++. ..+..+...    ..|
T Consensus        56 ~rgiti~~~~~~~~~-~~--~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~----~~p  127 (691)
T PRK12739         56 ERGITITSAATTCFW-KG--HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY----GVP  127 (691)
T ss_pred             hcCCCccceeEEEEE-CC--EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc----CCC
Confidence            333444555555655 44  6788999999988877788889999999999999875332222 223333322    367


Q ss_pred             EEEEeeCCCCCC
Q psy38            93 FALVGCKLDLLQ  104 (193)
Q Consensus        93 iilv~nK~Dl~~  104 (193)
                      ++++.||+|+..
T Consensus       128 ~iv~iNK~D~~~  139 (691)
T PRK12739        128 RIVFVNKMDRIG  139 (691)
T ss_pred             EEEEEECCCCCC
Confidence            889999999864

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.42  E-value=1.7e-06  Score=61.68  Aligned_cols=85  Identities=18%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             cEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcC
Q psy38            58 VGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQ  137 (193)
Q Consensus        58 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  137 (193)
                      |++++|+|+.++.+...  .|+..  ......+.|+++|.||+|+...   ..+ ......+....+..++.+||+++.|
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~---~~~-~~~~~~~~~~~~~~ii~vSa~~~~g   72 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPK---EVL-RKWLAYLRHSYPTIPFKISATNGQG   72 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCH---HHH-HHHHHHHHhhCCceEEEEeccCCcC
Confidence            68999999988765443  23331  1112234788899999998431   111 1111123333455788999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy38           138 VENAFTAVTQEIY  150 (193)
Q Consensus       138 i~e~f~~i~~~i~  150 (193)
                      ++++++.+.+...
T Consensus        73 i~~L~~~i~~~~~   85 (155)
T cd01849          73 IEKKESAFTKQTN   85 (155)
T ss_pred             hhhHHHHHHHHhH
Confidence            9999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1707|consensus

Probab=98.42  E-value=1.8e-06  Score=71.97  Aligned_cols=142  Identities=18%  Similarity=0.106  Sum_probs=97.5

Q ss_pred             eeeeeec-cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH
Q psy38             2 VTLLYLY-IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM   80 (193)
Q Consensus         2 ~sll~r~-~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~   80 (193)
                      .|++.|- .+.+..+....+....+.+ .|..-.+.+-|.+-. ...-+...- ..||+++++||.+++.+|.-+...++
T Consensus       443 ~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~  519 (625)
T KOG1707|consen  443 QSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYN  519 (625)
T ss_pred             HHHhccccccccccCCCCceeeeeeee-ccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHH
Confidence            3445553 4467677777777888888 677778888887754 222222222 77999999999999999998766544


Q ss_pred             HHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            81 EAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        81 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      .-..   ....|+++|++|+|+.+.  ........ .+++.++++ +-...|.+.... .++|..|+..+..-.
T Consensus       520 ~~~~---~~~~Pc~~va~K~dlDe~--~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  520 KYFD---LYKIPCLMVATKADLDEV--PQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             Hhhh---ccCCceEEEeeccccchh--hhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence            3332   356899999999999763  11122222 689999998 455566664334 899999998776544

>cd01858 NGP_1 NGP-1

Probab=98.36  E-value=2.3e-06  Score=61.09  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             hccCccEEEEEEeCCChhH--HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEe
Q psy38            53 YYRNSVGALLVYDITSRAS--FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET  130 (193)
Q Consensus        53 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (193)
                      .++++|++++|.|+.++..  ...+.+++.   . . ..+.|+++|.||+|+...   .. .......+.+......+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~-~~~~p~ilVlNKiDl~~~---~~-~~~~~~~~~~~~~~~~~~i   75 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-E-KPHKHLIFVLNKCDLVPT---WV-TARWVKILSKEYPTIAFHA   75 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-c-cCCCCEEEEEEchhcCCH---HH-HHHHHHHHhcCCcEEEEEe
Confidence            4678999999999988632  222233222   2 1 223678899999998531   11 1111222222222345779


Q ss_pred             cCCCCcCHHHHHHHHHHHH
Q psy38           131 SSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       131 Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ||+.+.|++++.+.+.+..
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.35  E-value=6.2e-06  Score=64.93  Aligned_cols=117  Identities=16%  Similarity=0.059  Sum_probs=78.9

Q ss_pred             EEEEEeeCCCcccccc----chhhh---ccCccEEEEEEeCCChh---HHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERFRS----ITKSY---YRNSVGALLVYDITSRA---SFEHIPVWMMEAKRHIE-PHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~----~~~~~---~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~-~~~~piilv~nK~D  101 (193)
                      -.+.+-|+||.-+-.+    +...|   ++.|-+++++.|++..+   ..++......++..+.. ....|.++|+||+|
T Consensus       207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD  286 (369)
T COG0536         207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID  286 (369)
T ss_pred             CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence            3477899998643222    22333   45789999999998643   46666677777777643 44678889999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCCCc--EEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           102 LLQSGVPREVSEAEAKAFASQNDIL--HFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~~~--~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +..+   .+-.......+....+..  ++ +||.++.|++++...+.+.+....
T Consensus       287 ~~~~---~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         287 LPLD---EEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             CCcC---HHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHhh
Confidence            6541   222223333444444443  33 999999999999999998877765

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.34  E-value=4.2e-06  Score=69.64  Aligned_cols=150  Identities=16%  Similarity=0.227  Sum_probs=100.2

Q ss_pred             eeeeec--cCCCCCcceeeEEEEEEEecC-CcEEEEEEeeCCCccccccchhhhccC----ccEEEEEEeCCChhH-Hhh
Q psy38             3 TLLYLY--IQISDPTVGVDFFARLVTMRD-GARIKLQLWDTAGQERFRSITKSYYRN----SVGALLVYDITSRAS-FEH   74 (193)
Q Consensus         3 sll~r~--~~~~~pt~~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~----~d~~i~v~d~~~~~s-~~~   74 (193)
                      +||.+|  .+++.++.|.+|.+-.+.-.+ ....++.+|..+|...+..+....+..    --.+|||.|++.|-. +++
T Consensus        40 tli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~es  119 (472)
T PF05783_consen   40 TLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMES  119 (472)
T ss_pred             HHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHH
Confidence            577777  677888888888776655311 133578999998877777776555542    356889999998743 334


Q ss_pred             HHHHHHHHHHhc-------------------------C----C--------------------------------CCCeE
Q psy38            75 IPVWMMEAKRHI-------------------------E----P--------------------------------HRPVF   93 (193)
Q Consensus        75 ~~~~~~~i~~~~-------------------------~----~--------------------------------~~~pi   93 (193)
                      +..|+.-+..+.                         .    .                                -.+||
T Consensus       120 L~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi  199 (472)
T PF05783_consen  120 LEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPI  199 (472)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcce
Confidence            444443331111                         0    0                                02799


Q ss_pred             EEEeeCCCCCCCC----CCCc----cCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            94 ALVGCKLDLLQSG----VPRE----VSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        94 ilv~nK~Dl~~~~----~~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +||.+|+|.....    ...+    .-....+.+|-++|+.++.||++...+++-++..|.+.++..
T Consensus       200 ~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  200 VVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             EEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence            9999999963211    0011    112446678888999999999999999999999988887664

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.34  E-value=5.4e-06  Score=65.50  Aligned_cols=114  Identities=22%  Similarity=0.215  Sum_probs=77.2

Q ss_pred             cceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH--HHHHHHHhcCCCCCe
Q psy38            15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV--WMMEAKRHIEPHRPV   92 (193)
Q Consensus        15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~~p   92 (193)
                      .|.+|..++.+..   .+-.+.+-||||++.|.+....-...||++|++.|+-.. -++..++  ++..+..     -.-
T Consensus        71 GITIDVAYRyFsT---~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLG-----Irh  141 (431)
T COG2895          71 GITIDVAYRYFST---EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLG-----IRH  141 (431)
T ss_pred             CceEEEEeeeccc---ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhC-----CcE
Confidence            3445666666655   446688999999999988877788889999999998532 1222211  3333332     256


Q ss_pred             EEEEeeCCCCCCCCCCCccCH---HHHHHHHHhCCC---cEEEecCCCCcCHH
Q psy38            93 FALVGCKLDLLQSGVPREVSE---AEAKAFASQNDI---LHFETSSRSGFQVE  139 (193)
Q Consensus        93 iilv~nK~Dl~~~~~~~~v~~---~~~~~~~~~~~~---~~~~~Sa~~~~~i~  139 (193)
                      +++..||+||.+-  .+....   .+-..|+.++++   .++..||..|.||-
T Consensus       142 vvvAVNKmDLvdy--~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         142 VVVAVNKMDLVDY--SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             EEEEEeeeccccc--CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            7799999999762  111211   233457777775   68899999999885

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.31  E-value=4.1e-06  Score=61.39  Aligned_cols=108  Identities=16%  Similarity=0.091  Sum_probs=66.9

Q ss_pred             EEEeeCCCc----------cccccchhhhccC---ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            35 LQLWDTAGQ----------ERFRSITKSYYRN---SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        35 l~l~D~~g~----------~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      +.+.|.||-          +.+..+...|++.   -.++++++|...+..-.+. ..++-+..    .+.|+++|.||+|
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~D  146 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKAD  146 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccc
Confidence            789999982          3445555666663   5778899998765433222 22232332    3578999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHh----CCCc--EEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQ----NDIL--HFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~----~~~~--~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ....   ... .......+..    ....  ++..|+..+.|++++...|.+.+..
T Consensus       147 Ki~~---~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         147 KLKK---SER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cCCh---hHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            7541   111 1111222222    2222  7789999999999999988876543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.31  E-value=1.8e-06  Score=75.81  Aligned_cols=87  Identities=20%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCC
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP   91 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~   91 (193)
                      +..|+...+....... ++..+.+.+|||+|+.+|.......+..+|++|+|+|+.+.-..+....| ..+..    ...
T Consensus        66 rg~Ti~~~~~~~~~~~-~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~----~~~  139 (720)
T TIGR00490        66 RGITINAANVSMVHEY-EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK----ENV  139 (720)
T ss_pred             hcchhhcccceeEEee-cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH----cCC
Confidence            3446655555544455 67789999999999999887788899999999999999764222222222 22222    134


Q ss_pred             eEEEEeeCCCCCC
Q psy38            92 VFALVGCKLDLLQ  104 (193)
Q Consensus        92 piilv~nK~Dl~~  104 (193)
                      |+++|+||.|...
T Consensus       140 p~ivviNKiD~~~  152 (720)
T TIGR00490       140 KPVLFINKVDRLI  152 (720)
T ss_pred             CEEEEEEChhccc
Confidence            6679999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.29  E-value=3.1e-06  Score=59.40  Aligned_cols=77  Identities=16%  Similarity=0.088  Sum_probs=52.1

Q ss_pred             hhhccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEE
Q psy38            51 KSYYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHF  128 (193)
Q Consensus        51 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~  128 (193)
                      ...++.+|++++|+|+.++.+..  .+..|+...    . .+.|+++|+||+|+..+   .  ......++....+..++
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~---~--~~~~~~~~~~~~~~~ii   75 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTE---E--QRKAWAEYFKKEGIVVV   75 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCH---H--HHHHHHHHHHhcCCeEE
Confidence            45678899999999998876544  334444332    1 24688899999998541   1  12234455556678899


Q ss_pred             EecCCCCcC
Q psy38           129 ETSSRSGFQ  137 (193)
Q Consensus       129 ~~Sa~~~~~  137 (193)
                      .+||.++.+
T Consensus        76 ~iSa~~~~~   84 (141)
T cd01857          76 FFSALKENA   84 (141)
T ss_pred             EEEecCCCc
Confidence            999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=5.3e-06  Score=64.82  Aligned_cols=114  Identities=17%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      -++.|.|.+|++-.-...-.-..=+|++++|.+++.+..--.....+..+.-   ..-.-+++|.||.||.... ...-.
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI---igik~iiIvQNKIDlV~~E-~AlE~  161 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI---IGIKNIIIVQNKIDLVSRE-RALEN  161 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh---hccceEEEEecccceecHH-HHHHH
Confidence            4678999999986433222223336999999999875332223222222221   1224678999999995521 11234


Q ss_pred             HHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           113 EAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       113 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +++.++|.+-   .+.+++.+||..+.||+.+++.|.+.|-
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            5566666655   4579999999999999999988877654

>PRK13796 GTPase YqeH; Provisional

Probab=98.28  E-value=5.9e-06  Score=67.02  Aligned_cols=83  Identities=23%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             cCcc-EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----HHHHhCCC---c
Q psy38            55 RNSV-GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----AFASQNDI---L  126 (193)
Q Consensus        55 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~~~~~---~  126 (193)
                      ...+ .+++|+|+.+..     ..|...+.....  +.|+++|+||+||..    +....+...    .+++..++   .
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~--~kpviLViNK~DLl~----~~~~~~~i~~~l~~~~k~~g~~~~~  135 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG--NNPVLLVGNKADLLP----KSVKKNKVKNWLRQEAKELGLRPVD  135 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHhC--CCCEEEEEEchhhCC----CccCHHHHHHHHHHHHHhcCCCcCc
Confidence            3444 889999987632     234555554432  467889999999954    223333333    34555665   5


Q ss_pred             EEEecCCCCcCHHHHHHHHHHH
Q psy38           127 HFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       127 ~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ++.+||+++.|+++++..+.+.
T Consensus       136 v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        136 VVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            8899999999999999999654

>KOG0099|consensus

Probab=98.26  E-value=4.8e-06  Score=63.33  Aligned_cols=140  Identities=13%  Similarity=0.103  Sum_probs=94.3

Q ss_pred             cCCCCCcce---------eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------h
Q psy38             9 IQISDPTVG---------VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------R   69 (193)
Q Consensus         9 ~~~~~pt~~---------~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~   69 (193)
                      ..+|.|+..         ..++...+.+   ..+.++.+|.+|+..-+..|...+.++.++|||.+.+.          .
T Consensus       172 ~~~Y~Ps~qDiLrcRvlTsGIfet~FqV---dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~q  248 (379)
T KOG0099|consen  172 QADYVPSDQDILRCRVLTSGIFETKFQV---DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQ  248 (379)
T ss_pred             ccCCCCcHHHHHHhhhhccceeeEEEec---cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCch
Confidence            557777641         1234444555   34779999999999999999999999999999998874          2


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC------C--------------CC---------CccCH------H
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS------G--------------VP---------REVSE------A  114 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~--------------~~---------~~v~~------~  114 (193)
                      ..+.+....+..++++.-...+.+|++.||.|+...      .              +.         +.+..      +
T Consensus       249 NRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird  328 (379)
T KOG0099|consen  249 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRD  328 (379)
T ss_pred             hHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhh
Confidence            345566667777877765667889999999998321      0              00         00000      1


Q ss_pred             HHHHHHHh-----CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           115 EAKAFASQ-----NDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       115 ~~~~~~~~-----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +-......     +.+.+..++|.+.++|..+|...-+.|..
T Consensus       329 ~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr  370 (379)
T KOG0099|consen  329 EFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  370 (379)
T ss_pred             hHhhhccccCCCceecccceeEeechHHHHHHHHHHHHHHHH
Confidence            11111111     23556679999999999999987665554

>KOG1144|consensus

Probab=98.25  E-value=8.7e-06  Score=69.78  Aligned_cols=112  Identities=22%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             EEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---
Q psy38            34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---  107 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---  107 (193)
                      -+.++||+|++.|..++......||.+|+|.|+..   +++.+.+.    .+.    ....|+|++.||+|....+.   
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR----~rktpFivALNKiDRLYgwk~~p  612 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR----MRKTPFIVALNKIDRLYGWKSCP  612 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHH----hcCCCeEEeehhhhhhcccccCC
Confidence            46889999999999999999999999999999975   34444331    122    34589999999999754321   


Q ss_pred             CCccC------------------HHHHHHHHHh-C-------------CCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           108 PREVS------------------EAEAKAFASQ-N-------------DILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       108 ~~~v~------------------~~~~~~~~~~-~-------------~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      ...+.                  .....+|+.. +             .+.++.+||.+|.||-+++.+|++..-..+
T Consensus       613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence            11110                  0112233332 1             135778999999999999999988755443

>KOG1423|consensus

Probab=98.25  E-value=1.6e-05  Score=61.84  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             CcEEEEEEeeCCCccccc------------cchhhhccCccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEE
Q psy38            30 GARIKLQLWDTAGQERFR------------SITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALV   96 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv   96 (193)
                      ....++.|+||+|.-.-.            +.....+.++|++++++|+++.-  ..+ .+.+..+..+.   .+|-++|
T Consensus       117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr--~~l~p~vl~~l~~ys---~ips~lv  191 (379)
T KOG1423|consen  117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR--TPLHPRVLHMLEEYS---KIPSILV  191 (379)
T ss_pred             cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc--CccChHHHHHHHHHh---cCCceee
Confidence            356889999999953211            11234566899999999999621  112 22333344443   3566699


Q ss_pred             eeCCCCCCCC----------CCCccCHHHHHHHHHh-CCC----------------cEEEecCCCCcCHHHHHHHHHHHH
Q psy38            97 GCKLDLLQSG----------VPREVSEAEAKAFASQ-NDI----------------LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        97 ~nK~Dl~~~~----------~~~~v~~~~~~~~~~~-~~~----------------~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .||.|....-          ....++. ...+...+ ...                .+|.+||++|.||+++-++++.++
T Consensus       192 mnkid~~k~k~~Ll~l~~~Lt~g~l~~-~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  192 MNKIDKLKQKRLLLNLKDLLTNGELAK-LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             ccchhcchhhhHHhhhHHhccccccch-hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            9999974310          0111111 01111111 111                389999999999999999999865


Q ss_pred             HH
Q psy38           150 YN  151 (193)
Q Consensus       150 ~~  151 (193)
                      -.
T Consensus       271 ~~  272 (379)
T KOG1423|consen  271 PP  272 (379)
T ss_pred             CC
Confidence            43

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.23  E-value=5.7e-06  Score=55.92  Aligned_cols=98  Identities=17%  Similarity=0.053  Sum_probs=68.2

Q ss_pred             EeeCCCc----cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            37 LWDTAGQ----ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        37 l~D~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      .+||+|.    ..+....-....++|+++++-+++++.|.-.-     .+.   .....|+|-|.+|+||.++     -.
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p-----~f~---~~~~k~vIgvVTK~DLaed-----~d  107 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP-----GFL---DIGVKKVIGVVTKADLAED-----AD  107 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc-----ccc---cccccceEEEEecccccch-----Hh
Confidence            4678874    22222234456789999999999987542211     111   2334568899999999652     34


Q ss_pred             HHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHH
Q psy38           113 EAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       113 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .+..+.+....|. ++|++|+.++.|++++++.+..
T Consensus       108 I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         108 ISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            4566677777887 8999999999999999998765

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.23  E-value=1.1e-05  Score=63.30  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=75.7

Q ss_pred             EEEEEeeCCCccc--cccc------hhhhcc-CccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQER--FRSI------TKSYYR-NSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~--~~~~------~~~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      .++|+.||||.-+  ...+      .-..++ =.++++|+||.+..  .+.+.-..++.++.....   .|+++|.||+|
T Consensus       215 ~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~---~p~v~V~nK~D  291 (346)
T COG1084         215 LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK---APIVVVINKID  291 (346)
T ss_pred             ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC---CCeEEEEeccc
Confidence            5899999999632  1111      111222 25889999999864  466666778888988763   78999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +..   ..  ..+++.......+ .....+++..+.+++.+-..+...+.+.
T Consensus       292 ~~~---~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         292 IAD---EE--KLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ccc---hh--HHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence            854   12  2233333333333 4577889999999998888887766554

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=3.4e-06  Score=65.12  Aligned_cols=110  Identities=19%  Similarity=0.166  Sum_probs=75.8

Q ss_pred             eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeE
Q psy38            17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVF   93 (193)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~pi   93 (193)
                      |+.+....+.+ .-.+-++-..|++|+.+|-+.......++|+.|+|.++++.   ++.+++       +-...-..+.+
T Consensus        60 GITIntahvey-et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-------LlarqvGvp~i  131 (394)
T COG0050          60 GITINTAHVEY-ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------LLARQVGVPYI  131 (394)
T ss_pred             CceeccceeEE-ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-------hhhhhcCCcEE
Confidence            44555555566 55667788999999999988777778899999999999983   343332       21112334678


Q ss_pred             EEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-----cEEEecCCC
Q psy38            94 ALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-----LHFETSSRS  134 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~Sa~~  134 (193)
                      +++.||+|+.++...-..-..+.+++...+++     +++.-||..
T Consensus       132 vvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         132 VVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             EEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence            88999999977432233345667777777664     577777664

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.22  E-value=1.9e-05  Score=61.79  Aligned_cols=49  Identities=16%  Similarity=0.142  Sum_probs=36.9

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|.|.|.||.|+..        .++...+.+..  .++.+||..+.|++++.+.|.+.+
T Consensus       240 ~p~l~v~NKiD~~~--------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         240 KPALYVVNKIDLPG--------LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eeeEEEEecccccC--------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence            68889999999843        33333344333  788999999999999999888764

>TIGR00101 ureG urease accessory protein UreG

Probab=98.21  E-value=1.1e-05  Score=60.07  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=60.6

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      ....+.++.|..-.....+ .+  ++.+|.|+|+.+.++...  .+..++..      .- ++++||+|+...   ....
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~qi~~------ad-~~~~~k~d~~~~---~~~~  156 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGPGITR------SD-LLVINKIDLAPM---VGAD  156 (199)
T ss_pred             CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHhHhhh------cc-EEEEEhhhcccc---cccc
Confidence            3445677777321111111 11  578999999987554321  11112210      12 589999999641   1112


Q ss_pred             HHHHHHHHHh--CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           113 EAEAKAFASQ--NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       113 ~~~~~~~~~~--~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .+...+..+.  .+.+++++||++|.|++++|+++.+..
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            2333333333  457999999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1191|consensus

Probab=98.18  E-value=7.7e-06  Score=67.13  Aligned_cols=132  Identities=21%  Similarity=0.153  Sum_probs=82.7

Q ss_pred             eeeEEEEEEEecCCcEEEEEEeeCCCccc-ccc--------chhhhccCccEEEEEEeC--CChhHHhhHHHHHHHHHHh
Q psy38            17 GVDFFARLVTMRDGARIKLQLWDTAGQER-FRS--------ITKSYYRNSVGALLVYDI--TSRASFEHIPVWMMEAKRH   85 (193)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~--------~~~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~i~~~   85 (193)
                      ..|-....+++ +|  +.+.+.||+|..+ -..        ..+..++.+|++++|+|+  ++-++-..+.+.++....-
T Consensus       303 TRDaiea~v~~-~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g  379 (531)
T KOG1191|consen  303 TRDAIEAQVTV-NG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVG  379 (531)
T ss_pred             chhhheeEeec-CC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccc
Confidence            35777888888 88  6678999999765 111        124567789999999999  3323322333333333322


Q ss_pred             cC-----CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC---CCc-EEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            86 IE-----PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN---DIL-HFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        86 ~~-----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~---~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ..     ...-+++++.||.|+..+.+  ..+.. ...+....   ..+ ..++|+++++|++++...+.........
T Consensus       380 ~~~~~~~~~~~~~i~~~nk~D~~s~~~--~~~~~-~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  380 LVVIVNKMEKQRIILVANKSDLVSKIP--EMTKI-PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             eEEEeccccccceEEEechhhccCccc--cccCC-ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            11     12367889999999976411  11110 00111111   133 4469999999999999999998877655

>KOG3905|consensus

Probab=98.16  E-value=2.8e-05  Score=60.99  Aligned_cols=150  Identities=13%  Similarity=0.186  Sum_probs=100.0

Q ss_pred             eeeeeec--cCCCCCcceeeEEEEEEEecCC--cEEEEEEeeCCCccccccchhhhccCc----cEEEEEEeCCCh-hHH
Q psy38             2 VTLLYLY--IQISDPTVGVDFFARLVTMRDG--ARIKLQLWDTAGQERFRSITKSYYRNS----VGALLVYDITSR-ASF   72 (193)
Q Consensus         2 ~sll~r~--~~~~~pt~~~~~~~~~~~~~~~--~~~~l~l~D~~g~~~~~~~~~~~~~~~----d~~i~v~d~~~~-~s~   72 (193)
                      +|||.++  .+++.+.-|.+|.+-.+.- +.  ...++.+|-..|..-...+....+.-.    ..+|++.|++++ .-+
T Consensus        66 tsLi~klqg~e~~KkgsgLeY~yl~V~d-e~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~l  144 (473)
T KOG3905|consen   66 TSLISKLQGSETVKKGSGLEYLYLHVHD-EDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLL  144 (473)
T ss_pred             hHHHHHhhcccccCCCCCcceEEEeccc-ccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHH
Confidence            4667777  6677777676666555543 22  235778898877654444444433322    468899999998 556


Q ss_pred             hhHHHHHHHHHHhcCC------------------------------------------------------------CCCe
Q psy38            73 EHIPVWMMEAKRHIEP------------------------------------------------------------HRPV   92 (193)
Q Consensus        73 ~~~~~~~~~i~~~~~~------------------------------------------------------------~~~p   92 (193)
                      +.+.+|..-+.++...                                                            -.+|
T Consensus       145 esLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~  224 (473)
T KOG3905|consen  145 ESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIP  224 (473)
T ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCc
Confidence            6677777655443310                                                            0289


Q ss_pred             EEEEeeCCCCCC----CCCCCcc----CHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            93 FALVGCKLDLLQ----SGVPREV----SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        93 iilv~nK~Dl~~----~~~~~~v----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +++|.||+|...    ...-+..    -....+.||-++|...+.+|++...|++-+...|++.++--
T Consensus       225 vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  225 VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence            999999999832    1000111    12446688888999999999999999999999999987653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.15  E-value=3.5e-05  Score=65.76  Aligned_cols=119  Identities=12%  Similarity=0.088  Sum_probs=81.0

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH   89 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~   89 (193)
                      ++...-.+.. .|  -.+++.|.||-=...      ...+.|+.  ..|++|-+.|+++.+.   --+.--++.+.    
T Consensus        38 VEkkeg~~~~-~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR---nLyltlQLlE~----  107 (653)
T COG0370          38 VEKKEGKLKY-KG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER---NLYLTLQLLEL----  107 (653)
T ss_pred             EEEEEEEEEe-cC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH---HHHHHHHHHHc----
Confidence            4555555555 55  348899999852211      12234443  5699999999998542   22222344544    


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +.|++++.|+.|..+   .+.+ .-+...+.+..|++++.+||++|.|++++..++++..-
T Consensus       108 g~p~ilaLNm~D~A~---~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         108 GIPMILALNMIDEAK---KRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             CCCeEEEeccHhhHH---hcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence            378999999999865   2333 23345788889999999999999999999999886433

>cd01856 YlqF YlqF

Probab=98.14  E-value=7.6e-06  Score=59.28  Aligned_cols=91  Identities=13%  Similarity=0.040  Sum_probs=59.5

Q ss_pred             cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcE
Q psy38            48 SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH  127 (193)
Q Consensus        48 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~  127 (193)
                      ......++++|.+++++|++++..-... .+    ....  ...|+++|.||+|+...   ..  .....++.+..+..+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~--~~k~~ilVlNK~Dl~~~---~~--~~~~~~~~~~~~~~v   78 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKIL--GNKPRIIVLNKADLADP---KK--TKKWLKYFESKGEKV   78 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHh--cCCCEEEEEehhhcCCh---HH--HHHHHHHHHhcCCeE
Confidence            3446678899999999999875432221 12    2211  12567799999998531   11  112223333445578


Q ss_pred             EEecCCCCcCHHHHHHHHHHHHH
Q psy38           128 FETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       128 ~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +.+||+++.|++++...+...+.
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHHH
Confidence            89999999999999999888753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK00007 elongation factor G; Reviewed

Probab=98.13  E-value=1.9e-05  Score=69.21  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38            16 VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL   95 (193)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil   95 (193)
                      +.++.....+.+ ++  ..+.|.||+|+.+|.......+..+|++++|+|+.....-++...| ..+...    ..|+++
T Consensus        61 ~ti~~~~~~~~~-~~--~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~----~~p~iv  132 (693)
T PRK00007         61 ITITSAATTCFW-KD--HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY----KVPRIA  132 (693)
T ss_pred             CCEeccEEEEEE-CC--eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc----CCCEEE
Confidence            334444455555 44  6789999999988766566778899999999998765333332222 233332    367789


Q ss_pred             EeeCCCCCC
Q psy38            96 VGCKLDLLQ  104 (193)
Q Consensus        96 v~nK~Dl~~  104 (193)
                      +.||+|+..
T Consensus       133 ~vNK~D~~~  141 (693)
T PRK00007        133 FVNKMDRTG  141 (693)
T ss_pred             EEECCCCCC
Confidence            999999863

>KOG0458|consensus

Probab=98.11  E-value=2.9e-05  Score=64.94  Aligned_cols=121  Identities=18%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             cceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHH--HHHHHHHHhcCCC
Q psy38            15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIP--VWMMEAKRHIEPH   89 (193)
Q Consensus        15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~--~~~~~i~~~~~~~   89 (193)
                      --|+........+ +-....+.+.|.||+..|.........++|++|+|.|++-.   ..|+.-.  +-...+....  +
T Consensus       238 erGvTm~v~~~~f-es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--g  314 (603)
T KOG0458|consen  238 ERGVTMDVKTTWF-ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--G  314 (603)
T ss_pred             hcceeEEeeeEEE-ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--C
Confidence            3345555555556 66778899999999999988777888899999999999752   1333211  1222233332  2


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHH----HHH-HhCC-----CcEEEecCCCCcCHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAK----AFA-SQND-----ILHFETSSRSGFQVENA  141 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~~i~e~  141 (193)
                      ..-++++.||.|+.+   +.+-..+++.    .|. +..|     +.++.||+.+|+|+...
T Consensus       315 i~qlivaiNKmD~V~---Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  315 ISQLIVAINKMDLVS---WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cceEEEEeecccccC---ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            456779999999876   4333333333    334 3333     57999999999998654

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=4.5e-05  Score=61.98  Aligned_cols=119  Identities=18%  Similarity=0.104  Sum_probs=80.0

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEE
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFA   94 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~pii   94 (193)
                      +|+...+... +.  ..+.|.|.+|++++-...-..+...|.+++|.+.++   +++.+.+     .+....+  ..-.+
T Consensus        38 iDlg~~y~~~-~d--~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL-----~iLdllg--i~~gi  107 (447)
T COG3276          38 IDLGFYYRKL-ED--GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL-----LILDLLG--IKNGI  107 (447)
T ss_pred             EeeeeEeccC-CC--CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH-----HHHHhcC--CCceE
Confidence            4555555555 22  378999999999987766667778999999999965   3343333     2233222  24556


Q ss_pred             EEeeCCCCCCCCCCCccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            95 LVGCKLDLLQSGVPREVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        95 lv~nK~Dl~~~~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +|.||.|+.+.   . -..+...+....   .+.+++.+|+.+|.||+++-..|.+..-
T Consensus       108 ivltk~D~~d~---~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         108 IVLTKADRVDE---A-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             EEEeccccccH---H-HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            99999998652   1 111222222222   3457899999999999999999999874

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.08  E-value=2.4e-05  Score=61.13  Aligned_cols=90  Identities=16%  Similarity=0.099  Sum_probs=59.9

Q ss_pred             hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38            50 TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE  129 (193)
Q Consensus        50 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (193)
                      ....++.+|++++|.|+..+.+-.+  .++..+.     .+.|+++|.||+|+..   ...  ...-.++....+..++.
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~---~~~--~~~~~~~~~~~~~~vi~   82 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLAD---PAV--TKQWLKYFEEKGIKALA   82 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCC---HHH--HHHHHHHHHHcCCeEEE
Confidence            4567889999999999977644322  1222222     1368889999999843   111  11112223335667899


Q ss_pred             ecCCCCcCHHHHHHHHHHHHHH
Q psy38           130 TSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       130 ~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +||+++.|++++...+.+.+-.
T Consensus        83 iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        83 INAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999888776643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.05  E-value=2.4e-05  Score=63.26  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecC
Q psy38            54 YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSS  132 (193)
Q Consensus        54 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa  132 (193)
                      ..++|.+++|+++..+.+...+.+++..+...    +.+.+||.||+||..+      ..+....+.. ..+++++.+|+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~----~i~piIVLNK~DL~~~------~~~~~~~~~~~~~g~~Vi~vSa  179 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES----GAEPVIVLTKADLCED------AEEKIAEVEALAPGVPVLAVSA  179 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc----CCCEEEEEEChhcCCC------HHHHHHHHHHhCCCCcEEEEEC
Confidence            57899999999997444444556666655543    2344689999999641      1111122222 35679999999


Q ss_pred             CCCcCHHHHHHHHH
Q psy38           133 RSGFQVENAFTAVT  146 (193)
Q Consensus       133 ~~~~~i~e~f~~i~  146 (193)
                      +++.|++++..++.
T Consensus       180 ~~g~gl~~L~~~L~  193 (356)
T PRK01889        180 LDGEGLDVLAAWLS  193 (356)
T ss_pred             CCCccHHHHHHHhh
Confidence            99999999888874

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.04  E-value=3.6e-05  Score=57.52  Aligned_cols=55  Identities=16%  Similarity=0.058  Sum_probs=39.4

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .|.++++||+|+.+.   .........+..++.  ..+++++||+++.|++++|+++.+.
T Consensus       149 ~a~iiv~NK~Dl~~~---~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       149 EADLIVINKADLAEA---VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hCCEEEEEHHHcccc---chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            456799999999641   122233343444433  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.01  E-value=6.8e-05  Score=61.44  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=28.0

Q ss_pred             EEEEEEeeCCCcc----ccccchhhh---ccCccEEEEEEeCC
Q psy38            32 RIKLQLWDTAGQE----RFRSITKSY---YRNSVGALLVYDIT   67 (193)
Q Consensus        32 ~~~l~l~D~~g~~----~~~~~~~~~---~~~~d~~i~v~d~~   67 (193)
                      .+.+++||++|..    ....+...+   ++++|++++|+|+.
T Consensus        71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3789999999953    333455566   88999999999996

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.98  E-value=5.5e-05  Score=59.46  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38            50 TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE  129 (193)
Q Consensus        50 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (193)
                      ....++.+|++++|.|+.++.+...  .++..+..     ..|+++|.||+|+..    .. ......++....+..++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~----~~-~~~~~~~~~~~~~~~vi~   85 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLAD----PE-VTKKWIEYFEEQGIKALA   85 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCC----HH-HHHHHHHHHHHcCCeEEE
Confidence            4567889999999999977644332  22222222     367889999999843    11 112222333344677899


Q ss_pred             ecCCCCcCHHHHHHHHHHHHHHH
Q psy38           130 TSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       130 ~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +||.++.|++++...+...+-..
T Consensus        86 vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         86 INAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             EECCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999887766443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.98  E-value=0.0001  Score=58.85  Aligned_cols=111  Identities=14%  Similarity=-0.002  Sum_probs=67.4

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.|.||+|...-.   ......+|.++++.+....+.+....   ..+.+..      -++|.||+|+..... ..-.
T Consensus       149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~a------DIiVVNKaDl~~~~~-a~~~  215 (332)
T PRK09435        149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIMELA------DLIVINKADGDNKTA-ARRA  215 (332)
T ss_pred             CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhhhh------heEEeehhcccchhH-HHHH
Confidence            667899999975322   22466799999997644444443322   2233321      259999999865210 0001


Q ss_pred             HHHHHHHHHh-------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38           113 EAEAKAFASQ-------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus       113 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      ..+.......       +..+++.+||.++.||+++++++.+..-...+.+
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg  266 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG  266 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC
Confidence            1111111111       2258999999999999999999999766544444

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=6.3e-05  Score=61.19  Aligned_cols=101  Identities=16%  Similarity=0.029  Sum_probs=66.6

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      +...+..++. +-....+.+.||||+++|..-.-..+.-+|.+++|.|+...-.-+ ..+    +.+.+...++||+-+.
T Consensus        67 ISVtsSVMqF-~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~K----LfeVcrlR~iPI~TFi  140 (528)
T COG4108          67 ISVTSSVMQF-DYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLK----LFEVCRLRDIPIFTFI  140 (528)
T ss_pred             ceEEeeEEEe-ccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHH----HHHHHhhcCCceEEEe
Confidence            3444444444 445688999999999998876666677799999999997632111 122    2333445579999999


Q ss_pred             eCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38            98 CKLDLLQSGVPREVSEAEAKAFASQNDILHFE  129 (193)
Q Consensus        98 nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (193)
                      ||.|....     -+.+...+....+++.++.
T Consensus       141 NKlDR~~r-----dP~ELLdEiE~~L~i~~~P  167 (528)
T COG4108         141 NKLDREGR-----DPLELLDEIEEELGIQCAP  167 (528)
T ss_pred             eccccccC-----ChHHHHHHHHHHhCcceec
Confidence            99998652     3455555565665554443

>KOG3886|consensus

Probab=97.93  E-value=2.1e-05  Score=58.85  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=62.3

Q ss_pred             EEEEEEeeCCCcccccc-----chhhhccCccEEEEEEeCCChhHHhhHHH---HHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            32 RIKLQLWDTAGQERFRS-----ITKSYYRNSVGALLVYDITSRASFEHIPV---WMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ++.+.+||++|++.+-+     .....+++.+++|++||++..+--.++.+   -++.+.++  .+...+.+..+|.||.
T Consensus        52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv  129 (295)
T KOG3886|consen   52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLV  129 (295)
T ss_pred             hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhc
Confidence            37889999999985322     34567889999999999987653333333   34444443  4456777899999996


Q ss_pred             CCCCCCccC---HHHHHHHHHhCCCcEEEecCCC
Q psy38           104 QSGVPREVS---EAEAKAFASQNDILHFETSSRS  134 (193)
Q Consensus       104 ~~~~~~~v~---~~~~~~~~~~~~~~~~~~Sa~~  134 (193)
                      .......+.   .+....+....++.++.+|.-+
T Consensus       130 ~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD  163 (295)
T KOG3886|consen  130 QEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD  163 (295)
T ss_pred             ccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence            521111111   1222233333456777776553

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.90  E-value=0.00012  Score=57.25  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=68.0

Q ss_pred             ccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38            47 RSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI  125 (193)
Q Consensus        47 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~  125 (193)
                      ..+.+.-+.+.|-+++++++.+|+ +..-+.+++--....   .-.|+ ++.||+||.++   .....++........++
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pv-IvlnK~DL~~~---~~~~~~~~~~~y~~~gy  142 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPV-IVLNKIDLLDD---EEAAVKELLREYEDIGY  142 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEE-EEEEccccCcc---hHHHHHHHHHHHHhCCe
Confidence            344555566788888888888875 666677776655543   23566 88999999763   11111445567777899


Q ss_pred             cEEEecCCCCcCHHHHHHHHHHH
Q psy38           126 LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       126 ~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +.+.+|++++.+++++...+...
T Consensus       143 ~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         143 PVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             eEEEecCcCcccHHHHHHHhcCC
Confidence            99999999999999998887654

>KOG1490|consensus

Probab=97.89  E-value=6.6e-05  Score=62.02  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=79.9

Q ss_pred             EEEEEeeCCCcccccc----chh-----hhccCccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERFRS----ITK-----SYYRNSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~----~~~-----~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ...++.||||.-+...    .++     ...+=-.+|+|++|++..  .|..+-...+..|+...  .+.|.|+|.||+|
T Consensus       215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D  292 (620)
T KOG1490|consen  215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKID  292 (620)
T ss_pred             eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeeccc
Confidence            5678889999643111    111     111223678999999874  45666566777777764  4578889999999


Q ss_pred             CCCCCCCCccCHHH---HHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           102 LLQSGVPREVSEAE---AKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       102 l~~~~~~~~v~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +..   ...++.+.   ...+....+++++++|..+.+||.++-....+.++...
T Consensus       293 ~m~---~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  293 AMR---PEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             ccC---ccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence            866   33444433   33444445689999999999999999999988888764

>KOG0085|consensus

Probab=97.82  E-value=1.6e-05  Score=59.50  Aligned_cols=144  Identities=17%  Similarity=0.123  Sum_probs=95.8

Q ss_pred             cCCCCCcceeeEEEEEEEec-------CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhH
Q psy38             9 IQISDPTVGVDFFARLVTMR-------DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RAS   71 (193)
Q Consensus         9 ~~~~~pt~~~~~~~~~~~~~-------~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s   71 (193)
                      .+.|.||- .|.....+...       +-.++.+++.|.+|+..-+..|.+.++++..++|+..++.          .+.
T Consensus       169 ~~~ylPTq-QDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENR  247 (359)
T KOG0085|consen  169 TPGYLPTQ-QDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENR  247 (359)
T ss_pred             CcccCcch-hhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence            56677764 23333333220       2245778899999999999999999999888888776643          344


Q ss_pred             HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHHh----CC------CcEE
Q psy38            72 FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFASQ----ND------ILHF  128 (193)
Q Consensus        72 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~~----~~------~~~~  128 (193)
                      +++....+..|..+-=..+.++|++.||.|+.++-             ....-....+++|.-+    ++      +.-.
T Consensus       248 MeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SH  327 (359)
T KOG0085|consen  248 MEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSH  327 (359)
T ss_pred             HHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeee
Confidence            55555566666665445578899999999986531             0112223444455443    22      2344


Q ss_pred             EecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           129 ETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       129 ~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      .++|.+..||.-+|.++-+.++...
T Consensus       328 fTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  328 FTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             eeecccchhHHHHHHHHHHHHHHhh
Confidence            6889999999999999998888754

>KOG0460|consensus

Probab=97.77  E-value=6.7e-05  Score=59.23  Aligned_cols=109  Identities=20%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeE
Q psy38            17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVF   93 (193)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~pi   93 (193)
                      |+.+....+.+ ...+-++--.|++|+.+|-.....-..+.|++|+|.+++|.   ++-+++    --.++   -...-+
T Consensus       102 GITIn~aHveY-eTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQ---VGV~~i  173 (449)
T KOG0460|consen  102 GITINAAHVEY-ETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQ---VGVKHI  173 (449)
T ss_pred             cceEeeeeeee-eccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHH---cCCceE
Confidence            55666666666 65666777899999999988777777889999999999984   333332    11122   234567


Q ss_pred             EEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-----CcEEEecCC
Q psy38            94 ALVGCKLDLLQSGVPREVSEAEAKAFASQND-----ILHFETSSR  133 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~  133 (193)
                      +++.||.|+.++....++-+-+.+++...++     +|++.-||.
T Consensus       174 vvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  174 VVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence            8999999997543233344566778888766     467766544

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.75  E-value=0.00072  Score=51.69  Aligned_cols=113  Identities=17%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             EEEEeeCCCccccccchhhhc--------cCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            34 KLQLWDTAGQERFRSITKSYY--------RNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      .+.++|||||.++-..+....        ...-+++++.|..-   +..|-..  ++-.+.... .-..|.+.|.||+|+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~-~~~lP~vnvlsK~Dl  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIML-RLELPHVNVLSKIDL  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHH-HHTSEEEEEE--GGG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHh-hCCCCEEEeeeccCc
Confidence            578999999987655544333        44567888888753   3334332  222211111 124799999999999


Q ss_pred             CCCCCCCcc----------------CHHHHHHHHHh---CC-C-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38           103 LQSGVPREV----------------SEAEAKAFASQ---ND-I-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       103 ~~~~~~~~v----------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .........                ......+++.-   .+ . .++.+|+.++.++++++..+-+.+
T Consensus       169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            651100000                01111122222   33 3 688999999999999998876643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.73  E-value=0.00023  Score=56.32  Aligned_cols=107  Identities=9%  Similarity=-0.072  Sum_probs=63.1

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      .+.+.|.||+|.....   ......+|.++++-...   +-+++......+.      ..|.++|.||+|+........+
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~------~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM------EIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh------hhccEEEEEcccccchhHHHHH
Confidence            3677899999854211   23456678888775433   3344444433333      2456799999998652100000


Q ss_pred             CHH---HHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           112 SEA---EAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       112 ~~~---~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ...   ....+...   +..+++.+||+++.|+++++.++.+..-
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            000   00111111   2246899999999999999999998744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.70  E-value=0.00011  Score=64.79  Aligned_cols=71  Identities=27%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ++....+.|+||||+.+|.......+..+|++|+|+|+.....-+....|. .....    ..|.+++.||.|+..
T Consensus        83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~----~~~~iv~iNK~D~~~  153 (731)
T PRK07560         83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE----RVKPVLFINKVDRLI  153 (731)
T ss_pred             cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc----CCCeEEEEECchhhc
Confidence            556788999999999998877788889999999999987653333223333 23322    235579999999753

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.67  E-value=0.00046  Score=46.45  Aligned_cols=71  Identities=18%  Similarity=0.055  Sum_probs=42.6

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCccccc---------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFR---------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR   90 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~   90 (193)
                      .....+.+ ++..  +.++||+|...-.         ......+..+|++++|+|.+++.. +....++..+.     ..
T Consensus        37 ~~~~~~~~-~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~  107 (116)
T PF01926_consen   37 PVYGQFEY-NNKK--FILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILRELK-----NK  107 (116)
T ss_dssp             EEEEEEEE-TTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TT
T ss_pred             eeeeeeee-ceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cC
Confidence            34445556 6644  4699999964311         112223478999999999877321 12223333332     34


Q ss_pred             CeEEEEeeC
Q psy38            91 PVFALVGCK   99 (193)
Q Consensus        91 ~piilv~nK   99 (193)
                      .|+++|.||
T Consensus       108 ~~~i~v~NK  116 (116)
T PF01926_consen  108 KPIILVLNK  116 (116)
T ss_dssp             SEEEEEEES
T ss_pred             CCEEEEEcC
Confidence            789999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.59  E-value=0.00013  Score=65.38  Aligned_cols=68  Identities=25%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ....+.|+||+|+.+|.......++.+|++|+|+|+...-.......|. .+...    ..|++++.||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~~----~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE----RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHHC----CCCEEEEEECCccc
Confidence            4678899999999999877788889999999999998754333333333 33332    36888999999985

>KOG0461|consensus

Probab=97.56  E-value=0.00057  Score=54.27  Aligned_cols=113  Identities=18%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccC---ccEEEEEEeCCChhHHhhHHH-HHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRN---SVGALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      .|...++.+.|++|+...   ++..+..   .|..+++.|+.....-+.+.- .+.++..      ...++|.||+|+..
T Consensus        66 q~e~lq~tlvDCPGHasL---IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lp  136 (522)
T KOG0461|consen   66 QGEQLQFTLVDCPGHASL---IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLP  136 (522)
T ss_pred             ccccceeEEEeCCCcHHH---HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEecccccc
Confidence            456678899999999764   4444444   477899999976432233322 2223322      34568899999743


Q ss_pred             CCCCCccCHHH-HHHHHHh---C----CCcEEEecCCCC----cCHHHHHHHHHHHHHH
Q psy38           105 SGVPREVSEAE-AKAFASQ---N----DILHFETSSRSG----FQVENAFTAVTQEIYN  151 (193)
Q Consensus       105 ~~~~~~v~~~~-~~~~~~~---~----~~~~~~~Sa~~~----~~i~e~f~~i~~~i~~  151 (193)
                      +. .+....++ +....+.   .    +.+++++||..|    ++|.|+...+-.++..
T Consensus       137 E~-qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  137 EN-QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             ch-hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            10 12222221 2222222   1    268999999999    6666666666666554

>KOG0468|consensus

Probab=97.56  E-value=0.00013  Score=62.27  Aligned_cols=69  Identities=25%  Similarity=0.284  Sum_probs=55.4

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      +++.+.+.+.||+|+-+|..-....++-+|++++++|+.+.-.++.- +.+....    ....|+++|+||.|.
T Consensus       193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai----q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI----QNRLPIVVVINKVDR  261 (971)
T ss_pred             cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH----hccCcEEEEEehhHH
Confidence            67889999999999999988888899999999999999876655533 3333333    335789999999996

>PTZ00416 elongation factor 2; Provisional

Probab=97.49  E-value=0.0002  Score=64.14  Aligned_cols=68  Identities=24%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      +...+.|.||+|+.+|.......++.+|++|+|+|+.+.-.-+. ...+..+...    ..|++++.||+|+.
T Consensus        90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~----~~p~iv~iNK~D~~  157 (836)
T PTZ00416         90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE----RIRPVLFINKVDRA  157 (836)
T ss_pred             CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc----CCCEEEEEEChhhh
Confidence            35778999999999887777888899999999999987533332 2333344432    36888999999985

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00029  Score=61.48  Aligned_cols=68  Identities=25%  Similarity=0.250  Sum_probs=53.3

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ...+.++|||||-+|..-....++-+|++|+|+|+...-..+.-.-|.+....     ..|.+++.||.|...
T Consensus        75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~  142 (697)
T COG0480          75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLG  142 (697)
T ss_pred             ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence            58899999999999998888899999999999999875444444445443332     367779999999754

>KOG1532|consensus

Probab=97.24  E-value=0.0047  Score=47.79  Aligned_cols=117  Identities=21%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             EEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ....+.|||||-+.-      ..+...+.  ...+++++.|...   +.+|-.-.-+.-.|.-   ....|+|+|.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence            556788999985421      12222233  2356667777633   4444433223333333   23589999999999


Q ss_pred             CCCCCCC-CccCH----HHHHH---------HHHh---------CCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           102 LLQSGVP-REVSE----AEAKA---------FASQ---------NDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       102 l~~~~~~-~~v~~----~~~~~---------~~~~---------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +.+.... ...++    +++.+         +...         .++..+-|||.+|.|.+++|.++-..+-+.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            9662100 00111    11111         0000         235788999999999999999988776554

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.23  E-value=0.0015  Score=38.04  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=29.0

Q ss_pred             ccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            57 SVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        57 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      .++++|++|++..  .+.++-...+.+++...  .+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            5889999999874  46677677888888864  3589999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.17  E-value=0.0049  Score=47.63  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=73.8

Q ss_pred             EEEEEeeCCCccc-------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38            33 IKLQLWDTAGQER-------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS  105 (193)
Q Consensus        33 ~~l~l~D~~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  105 (193)
                      -.+.+||++|-.+       ++.+...++...|.++.+.+..|+.---+ .+++.++.....  ..+++++.|.+|....
T Consensus        87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p  163 (296)
T COG3596          87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL--DKRVLFVVTQADRAEP  163 (296)
T ss_pred             cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc--CceeEEEEehhhhhcc
Confidence            3478999999654       66667788889999999999988642222 344555555432  2688899999997542


Q ss_pred             C-----CCCccCH-------HHHHHHHHhC-CC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           106 G-----VPREVSE-------AEAKAFASQN-DI-LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       106 ~-----~~~~v~~-------~~~~~~~~~~-~~-~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .     .....+.       ..+....+.. .+ +++.++...+-|++++...+++.+-
T Consensus       164 ~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         164 GREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             ccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            1     0111111       1111111111 13 7888888999999999999988654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.16  E-value=0.0073  Score=44.58  Aligned_cols=125  Identities=14%  Similarity=0.026  Sum_probs=66.9

Q ss_pred             EEEEEecCCcEEEEEEeeCCCcccccc--------ch---hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC-C
Q psy38            22 ARLVTMRDGARIKLQLWDTAGQERFRS--------IT---KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP-H   89 (193)
Q Consensus        22 ~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~   89 (193)
                      .....+ +|  ..+.++||||-.+...        +.   .....+.|++++|.++.. .+-. ....++.+.+..+. .
T Consensus        41 ~~~~~~-~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~  115 (196)
T cd01852          41 KESAVW-DG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKV  115 (196)
T ss_pred             eeeEEE-CC--eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHh
Confidence            333444 55  4688999999654321        11   123467899999999876 2211 12233344433221 1


Q ss_pred             CCeEEEEeeCCCCCCCCC-CCcc--CHHHHHHHHHhCCCcEEEec-----CCCCcCHHHHHHHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGV-PREV--SEAEAKAFASQNDILHFETS-----SRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~-~~~v--~~~~~~~~~~~~~~~~~~~S-----a~~~~~i~e~f~~i~~~i~~  151 (193)
                      -.++++|.|+.|...... ...+  .....+.+....+-.|+..+     +..+.++.++++.+-+.+.+
T Consensus       116 ~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         116 LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            246668899988644210 0000  11334444555454444443     44566888888777776655

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.09  E-value=0.012  Score=48.45  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             EEEecCCcEEEEEEeeCCCccc--------ccc--c-------------------hhhhcc-CccEEEEEE-eCC----C
Q psy38            24 LVTMRDGARIKLQLWDTAGQER--------FRS--I-------------------TKSYYR-NSVGALLVY-DIT----S   68 (193)
Q Consensus        24 ~~~~~~~~~~~l~l~D~~g~~~--------~~~--~-------------------~~~~~~-~~d~~i~v~-d~~----~   68 (193)
                      .+...++-...+.+.||+|-..        ...  +                   .+..+. .+++.|+|. |.+    .
T Consensus        82 EI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~  161 (492)
T TIGR02836        82 EININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIP  161 (492)
T ss_pred             EEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccc
Confidence            3344366778899999998432        111  0                   123344 789998888 653    1


Q ss_pred             hhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC--CcCHHHHHHHH
Q psy38            69 RASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS--GFQVENAFTAV  145 (193)
Q Consensus        69 ~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~e~f~~i  145 (193)
                      ++.+.+. .+|++++++.    +.|+++|.|+.|-..     ..+.+...++..+++++++.+|..+  ...|..++..+
T Consensus       162 Re~y~~aEe~~i~eLk~~----~kPfiivlN~~dp~~-----~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       162 REDYVEAEERVIEELKEL----NKPFIILLNSTHPYH-----PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             cccchHHHHHHHHHHHhc----CCCEEEEEECcCCCC-----chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence            2345555 5688888765    478999999999322     1245555567677788877666542  33444444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01882 BMS1 Bms1

Probab=97.06  E-value=0.0048  Score=46.73  Aligned_cols=99  Identities=14%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPR  109 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~  109 (193)
                      ....+.++||+|.-  ..+ ....+.+|++++++|.+....... ..++..+...    ..| +++|.||.|+.++....
T Consensus        81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~----g~p~vi~VvnK~D~~~~~~~~  152 (225)
T cd01882          81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQVH----GFPRVMGVLTHLDLFKKNKTL  152 (225)
T ss_pred             CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc----CCCeEEEEEeccccCCcHHHH
Confidence            44667899999853  222 234678999999999976432222 2233333322    244 55699999985421000


Q ss_pred             ccCHHHHHH-HHHh--CCCcEEEecCCCCcC
Q psy38           110 EVSEAEAKA-FASQ--NDILHFETSSRSGFQ  137 (193)
Q Consensus       110 ~v~~~~~~~-~~~~--~~~~~~~~Sa~~~~~  137 (193)
                      .-.....++ +..+  .+.+++.+||++...
T Consensus       153 ~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         153 RKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            001112222 3322  245899999998753

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG3887|consensus

Probab=97.01  E-value=0.01  Score=45.14  Aligned_cols=124  Identities=20%  Similarity=0.286  Sum_probs=75.7

Q ss_pred             cEEEEEEeeCCCccccccc---hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSI---TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  106 (193)
                      .-+.+++||.|||-.+-.-   ....++++-++|++.|+-+. =.+.+.++..-+....+ .+++.+=++.+|.|-..+.
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence            3467899999999664322   36778999999999998542 23333333333333322 4567777899999965432


Q ss_pred             C----CCccCHHHHHHHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38           107 V----PREVSEAEAKAFASQ----NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus       107 ~----~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .    ++.+...-..+++..    ..+.|+.+|.- .-.|-|.|..+++.+++..+.-
T Consensus       152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHhhhchhH
Confidence            1    111211112223322    22467777765 4678899999999888765543

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.90  E-value=0.002  Score=47.19  Aligned_cols=99  Identities=14%  Similarity=0.037  Sum_probs=60.7

Q ss_pred             EEEEEeeCCCccccccchhhhccCcc-EEEEEEeCCChhHHhhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSV-GALLVYDITSRASFEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPR  109 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~  109 (193)
                      ..+-|.+.+|.-    ..+..+.=.| .-|+|+|++..+.          +-....  ... .=++|+||.||..   ..
T Consensus        97 ~Dll~iEs~GNL----~~~~sp~L~d~~~v~VidvteGe~----------~P~K~gP~i~~-aDllVInK~DLa~---~v  158 (202)
T COG0378          97 LDLLFIESVGNL----VCPFSPDLGDHLRVVVIDVTEGED----------IPRKGGPGIFK-ADLLVINKTDLAP---YV  158 (202)
T ss_pred             CCEEEEecCcce----ecccCcchhhceEEEEEECCCCCC----------CcccCCCceeE-eeEEEEehHHhHH---Hh
Confidence            456667777721    1122222234 7888999886431          111101  111 2348999999965   23


Q ss_pred             ccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           110 EVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       110 ~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ....+...+-+++.  +.+++++|.++|.|+++++.|+....
T Consensus       159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            34445555555553  47999999999999999999987654

>KOG0466|consensus

Probab=96.87  E-value=0.0021  Score=50.40  Aligned_cols=109  Identities=13%  Similarity=0.170  Sum_probs=67.5

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      -++.|.|++|++-.-...-.-..=.|+++++...+.    +++-+++..  -+|.+.     .-++++.||.||..+. .
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L-----khiiilQNKiDli~e~-~  196 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL-----KHIIILQNKIDLIKES-Q  196 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh-----ceEEEEechhhhhhHH-H
Confidence            367899999998643222222223588888887765    333333321  123322     2467899999996521 1


Q ss_pred             CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..-..++...|.+.   .+.+++.+||.-+.||+-+.+.|+..|
T Consensus       197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            11233445556554   356999999999999998888877654

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=96.73  E-value=0.0031  Score=45.12  Aligned_cols=64  Identities=19%  Similarity=0.163  Sum_probs=42.4

Q ss_pred             EEEEEeeCCCccc----cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38            33 IKLQLWDTAGQER----FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL  100 (193)
Q Consensus        33 ~~l~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  100 (193)
                      ..+.|+||||...    ...+...+++.+|++|+|.+++..-+-.+...|.+....    ....+++|.||+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence            4578999999643    335577888999999999999885443343344333332    233477899984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.63  E-value=0.022  Score=41.31  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE  110 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  110 (193)
                      ..+.+.++|+++...  ......+..+|.++++...+ ..+...+..+++.+...    +.++.+|.|+.|...      
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~------  157 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----GIPVGVVINKYDLND------  157 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCc------
Confidence            457789999997643  23345678899999999876 44666677777666543    245679999998643      


Q ss_pred             cCHHHHHHHHHhCCCcEE
Q psy38           111 VSEAEAKAFASQNDILHF  128 (193)
Q Consensus       111 v~~~~~~~~~~~~~~~~~  128 (193)
                      -...+..++.+..+++++
T Consensus       158 ~~~~~~~~~~~~~~~~vl  175 (179)
T cd03110         158 EIAEEIEDYCEEEGIPIL  175 (179)
T ss_pred             chHHHHHHHHHHcCCCeE
Confidence            234566778888888765

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG0467|consensus

Probab=96.62  E-value=0.0049  Score=53.58  Aligned_cols=82  Identities=23%  Similarity=0.314  Sum_probs=57.2

Q ss_pred             CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHH-HHHHHHHhc
Q psy38            11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPV-WMMEAKRHI   86 (193)
Q Consensus        11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~-~~~~i~~~~   86 (193)
                      +.+.|-|+....--+.. -.+.+.+.++|++|+-+|.+.......-+|+++++.|+...   .+..-++. |++      
T Consensus        51 edeq~rgitmkss~is~-~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------  123 (887)
T KOG0467|consen   51 EDEQTRGITMKSSAISL-LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------  123 (887)
T ss_pred             chhhhhceeeecccccc-ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------
Confidence            33444455555555554 55678999999999999999888888889999999999763   23322222 322      


Q ss_pred             CCCCCeEEEEeeCCCC
Q psy38            87 EPHRPVFALVGCKLDL  102 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl  102 (193)
                        .-.|+ +|+||+|.
T Consensus       124 --~~~~~-lvinkidr  136 (887)
T KOG0467|consen  124 --GLKPI-LVINKIDR  136 (887)
T ss_pred             --cCceE-EEEehhhh
Confidence              12455 99999993

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.60  E-value=0.0051  Score=48.20  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=38.2

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh--CCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQ--NDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .+-++|.||+|+...   .....+...+..+.  ...+++.+||++|.|++++..||..+
T Consensus       231 ~ADIVVLNKiDLl~~---~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPY---LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcc---cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            344699999999541   11123333333333  34699999999999999999999774

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=96.53  E-value=0.016  Score=45.94  Aligned_cols=70  Identities=13%  Similarity=0.024  Sum_probs=39.7

Q ss_pred             EEEEEeeCCCccccccc-------hhhhcc--CccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCC-CCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERFRSI-------TKSYYR--NSVGALLVYDITSRASFEHI-PVWMMEAKRHIEP-HRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~-------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~piilv~nK~D  101 (193)
                      ..+.+|||+|..+....       ...++.  ..|++++|..++.. .+... ...++.+....+. --.+.++|.|+.|
T Consensus        86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d  164 (313)
T TIGR00991        86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ  164 (313)
T ss_pred             eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence            67899999997643221       122221  58999999765432 22222 2234444443321 1235779999999


Q ss_pred             CC
Q psy38           102 LL  103 (193)
Q Consensus       102 l~  103 (193)
                      ..
T Consensus       165 ~~  166 (313)
T TIGR00991       165 FS  166 (313)
T ss_pred             cC
Confidence            65

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.52  E-value=0.028  Score=45.61  Aligned_cols=108  Identities=17%  Similarity=0.090  Sum_probs=62.2

Q ss_pred             EEEEeeCCCccccccc--hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            34 KLQLWDTAGQERFRSI--TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      .+.|.||.|++.|-+.  +..+=...|..+++..+++..+--. ...+- |.-   --..|+++|.||+|+..+..-+.+
T Consensus       202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLg-i~~---a~~lPviVvvTK~D~~~ddr~~~v  276 (527)
T COG5258         202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLG-IAL---AMELPVIVVVTKIDMVPDDRFQGV  276 (527)
T ss_pred             EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhh-hhh---hhcCCEEEEEEecccCcHHHHHHH
Confidence            4678999999987542  2334446899999999887432211 11111 111   124799999999999653210000


Q ss_pred             -------------------CHHHHH--HHHHh--CC-CcEEEecCCCCcCHHHHHHHHHH
Q psy38           112 -------------------SEAEAK--AFASQ--ND-ILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       112 -------------------~~~~~~--~~~~~--~~-~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                                         ......  ..+-+  .+ +|+|.+|+.+|.|++ ++..+..
T Consensus       277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~  335 (527)
T COG5258         277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHH
Confidence                               001111  11111  22 489999999999995 3444433

>KOG0464|consensus

Probab=96.48  E-value=0.0012  Score=53.69  Aligned_cols=82  Identities=23%  Similarity=0.311  Sum_probs=63.5

Q ss_pred             eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEE
Q psy38            17 GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALV   96 (193)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv   96 (193)
                      |+.+...-+.+ +.+-.++.++||+|+..|+-..+..++--|+++.|||.+..-.-+.+..|.+.=     ..++|-..+
T Consensus        87 gitiqsaav~f-dwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad-----k~~ip~~~f  160 (753)
T KOG0464|consen   87 GITIQSAAVNF-DWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCF  160 (753)
T ss_pred             Cceeeeeeeec-ccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-----ccCCchhhh
Confidence            45566666777 777789999999999999888888888889999999998755555566675432     234777899


Q ss_pred             eeCCCCCC
Q psy38            97 GCKLDLLQ  104 (193)
Q Consensus        97 ~nK~Dl~~  104 (193)
                      .||.|...
T Consensus       161 inkmdk~~  168 (753)
T KOG0464|consen  161 INKMDKLA  168 (753)
T ss_pred             hhhhhhhh
Confidence            99999644

>smart00053 DYNc Dynamin, GTPase

Probab=96.45  E-value=0.017  Score=44.14  Aligned_cols=69  Identities=20%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             EEEEEEeeCCCccc-------------cccchhhhccC-ccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEe
Q psy38            32 RIKLQLWDTAGQER-------------FRSITKSYYRN-SVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG   97 (193)
Q Consensus        32 ~~~l~l~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~   97 (193)
                      ...+.+.|+||-..             ...+...|+++ .+++++|.|+...-.-.+...+...+.    +...++++|.
T Consensus       124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~Vi  199 (240)
T smart00053      124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVI  199 (240)
T ss_pred             CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEE
Confidence            36789999999742             11234567774 458888888764222112222222232    3346888999


Q ss_pred             eCCCCCC
Q psy38            98 CKLDLLQ  104 (193)
Q Consensus        98 nK~Dl~~  104 (193)
                      ||.|..+
T Consensus       200 TK~D~~~  206 (240)
T smart00053      200 TKLDLMD  206 (240)
T ss_pred             ECCCCCC
Confidence            9999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0465|consensus

Probab=96.43  E-value=0.043  Score=46.94  Aligned_cols=70  Identities=23%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS  105 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  105 (193)
                      ++..+.++||+|+-.|.--.+..++--|++|++++....-.-+....|. ++..+    +.|.+.+.||.|.-..
T Consensus       102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry----~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY----NVPRICFINKMDRMGA  171 (721)
T ss_pred             ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc----CCCeEEEEehhhhcCC
Confidence            4788999999999988777777888889999999886542222233343 34444    3788899999997543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.12  E-value=0.019  Score=41.65  Aligned_cols=44  Identities=20%  Similarity=0.068  Sum_probs=27.0

Q ss_pred             cEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            58 VGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        58 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      |+++++.|+.++.+-.+ ..+.+.+.  ....+.|+++|.||+|+..
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--hccCCCCEEEEEehhhcCC
Confidence            78999999987633221 12222221  1123478899999999943

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PTZ00258 GTP-binding protein; Provisional

Probab=96.00  E-value=0.082  Score=43.38  Aligned_cols=44  Identities=9%  Similarity=-0.024  Sum_probs=28.5

Q ss_pred             CCeEEEEeeCC--CCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCc
Q psy38            90 RPVFALVGCKL--DLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGF  136 (193)
Q Consensus        90 ~~piilv~nK~--Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~  136 (193)
                      ..|+++|+|+.  |+...   ..-..+...+++... +.+++.+||+-..
T Consensus       220 ~KP~iyv~N~~E~D~~~~---~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQ---KNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhccc---chHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            37899999999  75211   111344555666666 4789999986544

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.92  E-value=0.016  Score=44.58  Aligned_cols=106  Identities=16%  Similarity=0.111  Sum_probs=61.1

Q ss_pred             EEEEEeeCCC--ccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38            33 IKLQLWDTAG--QERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE  110 (193)
Q Consensus        33 ~~l~l~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  110 (193)
                      +.+.|.+|.|  |.+     -....-+|.+++|....-.+..+-+..=+.++-        -+ +|.||.|+...    .
T Consensus       122 ~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di-~vVNKaD~~gA----~  183 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DI-FVVNKADRPGA----D  183 (266)
T ss_dssp             -SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SE-EEEE--SHHHH----H
T ss_pred             CCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cE-EEEeCCChHHH----H
Confidence            3455667654  332     123445799999998876666555544333332        24 89999996441    1


Q ss_pred             cCHHH---HHHHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38           111 VSEAE---AKAFASQ----NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus       111 v~~~~---~~~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      -...+   ...+...    +..+++.+||.++.||++++++|.+.--.....+
T Consensus       184 ~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg  236 (266)
T PF03308_consen  184 RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESG  236 (266)
T ss_dssp             HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence            12222   2222221    2358999999999999999999988655554443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.80  E-value=0.061  Score=41.45  Aligned_cols=70  Identities=16%  Similarity=0.094  Sum_probs=39.2

Q ss_pred             EEEEEeeCCCcccccc---c-------hhhhcc--CccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCC-CCCeEEEEee
Q psy38            33 IKLQLWDTAGQERFRS---I-------TKSYYR--NSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEP-HRPVFALVGC   98 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~---~-------~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~piilv~n   98 (193)
                      ..+.+|||+|......   .       ...+++  ..++++++..++.. .+..+ ...+..|....+. --.++++|.|
T Consensus        79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T  157 (249)
T cd01853          79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT  157 (249)
T ss_pred             eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence            5689999999754410   1       122333  56888888766542 12221 2334444443221 1145789999


Q ss_pred             CCCCC
Q psy38            99 KLDLL  103 (193)
Q Consensus        99 K~Dl~  103 (193)
                      |+|..
T Consensus       158 ~~d~~  162 (249)
T cd01853         158 HAASS  162 (249)
T ss_pred             CCccC
Confidence            99974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.77  E-value=0.065  Score=42.11  Aligned_cols=109  Identities=14%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.|.+|.|--...   -...+-+|.++++.-..-.+..+-+..   .+.+..     - |+|.||.|....   ...-
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----D-i~vINKaD~~~A---~~a~  208 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----D-IIVINKADRKGA---EKAA  208 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----h-eeeEeccChhhH---HHHH
Confidence            345566665532111   123345788888876655454444433   333321     2 389999997542   1111


Q ss_pred             H--HHHHHHHH----h--CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38           113 E--AEAKAFAS----Q--NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus       113 ~--~~~~~~~~----~--~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .  ..+..+..    .  +..+++.+||..|+|+++++.++.++.-.....+
T Consensus       209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence            1  11112221    1  2348999999999999999999998776655554

>KOG1143|consensus

Probab=95.60  E-value=0.17  Score=41.06  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=64.4

Q ss_pred             EEEEEeeCCCccccccchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC----
Q psy38            33 IKLQLWDTAGQERFRSITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG----  106 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----  106 (193)
                      -.+.|.|.+|+.+|.......+.  ..|.+.++.+++..-.+.. +..+.-+...    +.|+.++.+|.|+....    
T Consensus       249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL----~iPfFvlvtK~Dl~~~~~~~~  323 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL----NIPFFVLVTKMDLVDRQGLKK  323 (591)
T ss_pred             ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh----CCCeEEEEEeeccccchhHHH
Confidence            46789999999998765433332  2477888888765432221 2233333332    47899999999996531    


Q ss_pred             -----------------CCCccCHHHHHHHHHh---CC-CcEEEecCCCCcCHHH
Q psy38           107 -----------------VPREVSEAEAKAFASQ---ND-ILHFETSSRSGFQVEN  140 (193)
Q Consensus       107 -----------------~~~~v~~~~~~~~~~~---~~-~~~~~~Sa~~~~~i~e  140 (193)
                                       +.+.-+.+++...+++   -+ .|+|.+|+.+|+|++-
T Consensus       324 tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  324 TVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             HHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence                             0112234455444444   23 4899999999999853

>KOG4273|consensus

Probab=95.52  E-value=0.074  Score=40.76  Aligned_cols=96  Identities=13%  Similarity=0.254  Sum_probs=64.8

Q ss_pred             ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------------CC----------
Q psy38            54 YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------------VP----------  108 (193)
Q Consensus        54 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------------~~----------  108 (193)
                      .+...+++++||++....+..+..|+..-.-+.  - -..+.+|||.|...-.               +.          
T Consensus        76 a~pl~a~vmvfdlse~s~l~alqdwl~htdins--f-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~df  152 (418)
T KOG4273|consen   76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDINS--F-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDF  152 (418)
T ss_pred             ccceeeEEEEEeccchhhhHHHHhhcccccccc--c-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhc
Confidence            344678999999999999999999987433221  1 1344689999853210               00          


Q ss_pred             ----------------CccCHHHHHHHHHhCCCcEEEecCC------------CCcCHHHHHHHHHHHHHHH
Q psy38           109 ----------------REVSEAEAKAFASQNDILHFETSSR------------SGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       109 ----------------~~v~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~e~f~~i~~~i~~~  152 (193)
                                      .......+.+++.++++.+++.++.            +..||+.+|.++...+-..
T Consensus       153 gisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg  224 (418)
T KOG4273|consen  153 GISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG  224 (418)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence                            0012345678899999999999884            2348999999888765443

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=94.74  E-value=0.085  Score=42.98  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             EEEEeeCCCccccccchhhh-----ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC--CCC-
Q psy38            34 KLQLWDTAGQERFRSITKSY-----YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL--LQS-  105 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl--~~~-  105 (193)
                      .+.+||.||...-.-....|     +...|.+|++.+-    .|.....|+..-....   +.|+++|-+|.|.  .+. 
T Consensus        87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~  159 (376)
T PF05049_consen   87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER  159 (376)
T ss_dssp             TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence            47899999864322223333     3456888887753    3544444444433332   4689999999995  111 


Q ss_pred             -CCCCccCH----HHHHHHHHh----CCC---cEEEecCCCCc--CHHHHHHHHHHHH
Q psy38           106 -GVPREVSE----AEAKAFASQ----NDI---LHFETSSRSGF--QVENAFTAVTQEI  149 (193)
Q Consensus       106 -~~~~~v~~----~~~~~~~~~----~~~---~~~~~Sa~~~~--~i~e~f~~i~~~i  149 (193)
                       ..++....    ++.++.+..    .++   ++|.+|+.+-.  +.-.+.+.+.+.+
T Consensus       160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence             00122222    222222222    343   78999988744  4555666665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0469|consensus

Probab=94.69  E-value=0.055  Score=45.46  Aligned_cols=69  Identities=28%  Similarity=0.290  Sum_probs=51.2

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      ++..+.+.++|.+|+..|.+.....++=.|+++.|.|.-+.--.+.-..+.+.+.++    -.|+ +|.||.|.
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPv-lv~NK~DR  162 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPV-LVMNKMDR  162 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccce-EEeehhhH
Confidence            345688999999999999998889999999999999987643222222233344443    3687 89999994

>COG1161 Predicted GTPases [General function prediction only]

Probab=94.57  E-value=0.11  Score=41.55  Aligned_cols=92  Identities=20%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             CCc-cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH
Q psy38            41 AGQ-ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF  119 (193)
Q Consensus        41 ~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~  119 (193)
                      +|+ .++.......+..+|+++-+.|+-++.+....     .+......  .+.++|+||.||..    ..+..+=...+
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~~--k~~i~vlNK~DL~~----~~~~~~W~~~~   86 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVKE--KPKLLVLNKADLAP----KEVTKKWKKYF   86 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHcc--CCcEEEEehhhcCC----HHHHHHHHHHH
Confidence            454 44555667888899999999999987643322     22222222  23369999999965    23333333344


Q ss_pred             HHhCCCcEEEecCCCCcCHHHHHH
Q psy38           120 ASQNDILHFETSSRSGFQVENAFT  143 (193)
Q Consensus       120 ~~~~~~~~~~~Sa~~~~~i~e~f~  143 (193)
                      ....+...+.+++..+.+...+..
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            444466667777777776666554

>KOG3929|consensus

Probab=93.81  E-value=0.13  Score=39.62  Aligned_cols=69  Identities=12%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCC-cEEEEEEeeCCCccccccchhhhcc----CccEEEEEEeCCChhH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDG-ARIKLQLWDTAGQERFRSITKSYYR----NSVGALLVYDITSRAS   71 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s   71 (193)
                      +.+|+++    .....||...+|.+-.-.- .+ .+-...+|+.+|......+...-+.    ..-.+|++.|+++++.
T Consensus        57 tt~I~~~FdR~e~~~~ptlaLEYtygRR~~-g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~  134 (363)
T KOG3929|consen   57 TTIILRCFDRDEPPKPPTLALEYTYGRRAK-GHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPND  134 (363)
T ss_pred             eEeehhhcCcccCCCCCceeeeeehhhhcc-CCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHH
Confidence            4577776    3345566655555444333 22 2334589999998765544322111    2345788999998653

>KOG0447|consensus

Probab=93.65  E-value=1.5  Score=37.70  Aligned_cols=97  Identities=20%  Similarity=0.240  Sum_probs=61.3

Q ss_pred             EEEEEeeCCCcc-------------ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            33 IKLQLWDTAGQE-------------RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        33 ~~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      -++.+.|.||.-             ...++...|..+.+++|+|+.-..   .+.-+....++...+.+.+..-|+|.||
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence            466788888742             234556789999999999996443   3333344555666666666777799999


Q ss_pred             CCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCC
Q psy38           100 LDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSG  135 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~  135 (193)
                      .||.+   ....+...++++..-.     .+.||.+-...|
T Consensus       489 VDlAE---knlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  489 VDLAE---KNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             cchhh---hccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            99977   2344555555544331     236776544433

>KOG1424|consensus

Probab=93.55  E-value=0.15  Score=42.81  Aligned_cols=77  Identities=18%  Similarity=0.140  Sum_probs=48.8

Q ss_pred             ccchhhhccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC
Q psy38            47 RSITKSYYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND  124 (193)
Q Consensus        47 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~  124 (193)
                      +.+|+ .++.+|++|.+.|+-++--|.  ++..|+.++...     .-.+|+.||+||..     .-....-.++....+
T Consensus       166 RQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~-----K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~n  234 (562)
T KOG1424|consen  166 RQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPS-----KANVLLVNKADLLP-----PEQRVAWAEYFRQNN  234 (562)
T ss_pred             HHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccccc-----cceEEEEehhhcCC-----HHHHHHHHHHHHhcC
Confidence            34443 366799999999999874433  344455444432     34568999999943     111222234455577


Q ss_pred             CcEEEecCCC
Q psy38           125 ILHFETSSRS  134 (193)
Q Consensus       125 ~~~~~~Sa~~  134 (193)
                      ++++.-||..
T Consensus       235 i~~vf~SA~~  244 (562)
T KOG1424|consen  235 IPVVFFSALA  244 (562)
T ss_pred             ceEEEEeccc
Confidence            9999989886

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=93.46  E-value=1  Score=34.41  Aligned_cols=63  Identities=21%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             EEEEEeeC-CCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            33 IKLQLWDT-AGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        33 ~~l~l~D~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      ..+.+.|| +|.+.|.   +...+++|.+|.|.|.+- .|+....+. .++.+...  -.++.+|.||.|-
T Consensus       134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg--~k~i~~V~NKv~e  197 (255)
T COG3640         134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG--IKRIFVVLNKVDE  197 (255)
T ss_pred             CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC--CceEEEEEeeccc
Confidence            45678887 6777754   566889999999999874 355544442 22332222  3678899999984

>KOG1954|consensus

Probab=93.41  E-value=0.13  Score=41.78  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             EEEEeeCCCccccc-----------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            34 KLQLWDTAGQERFR-----------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        34 ~l~l~D~~g~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      .+.+.||+|.-+-.           ....=|...+|.+|++||....+--++....+..++.+    .-.+-+|.||+|.
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADq  223 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQ  223 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccc
Confidence            56789999953322           22344677899999999986543222333334444432    2334479999998


Q ss_pred             CC
Q psy38           103 LQ  104 (193)
Q Consensus       103 ~~  104 (193)
                      .+
T Consensus       224 Vd  225 (532)
T KOG1954|consen  224 VD  225 (532)
T ss_pred             cC
Confidence            55

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=93.38  E-value=1.6  Score=35.60  Aligned_cols=41  Identities=5%  Similarity=-0.101  Sum_probs=26.9

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR  133 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  133 (193)
                      .|+++|+|+.|..-.  ...-..+...+++...+.+++.+||.
T Consensus       200 KP~i~v~N~~e~~~~--~~~~~~~~i~~~~~~~~~~~i~~sa~  240 (364)
T PRK09601        200 KPVLYVANVDEDDLA--DGNPYVKKVREIAAKEGAEVVVICAK  240 (364)
T ss_pred             CCeEEEEECCccccc--cccHHHHHHHHHHHHcCCeEEEEEHH
Confidence            799999999884210  11112345556666678888999975

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=93.35  E-value=1.3  Score=33.07  Aligned_cols=128  Identities=12%  Similarity=0.019  Sum_probs=62.6

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCcccccc----c---h----hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCC
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRS----I---T----KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP   88 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----~---~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~   88 (193)
                      .......+ +|  ..+.++||||-.+...    .   .    .....+.++++||+.++. -+-.+ ...++.+....+.
T Consensus        39 ~~~~~~~~-~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~  113 (212)
T PF04548_consen   39 CQKYSGEV-DG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGE  113 (212)
T ss_dssp             -EEEEEEE-TT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCG
T ss_pred             cceeeeee-cc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccH
Confidence            33344455 77  5578999999432111    1   1    123457899999999883 22111 2223333333321


Q ss_pred             C-CCeEEEEeeCCCCCCCCC-CCccC---HHHHHHHHHhCCCcEEEecCC------CCcCHHHHHHHHHHHHHHH
Q psy38            89 H-RPVFALVGCKLDLLQSGV-PREVS---EAEAKAFASQNDILHFETSSR------SGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        89 ~-~~piilv~nK~Dl~~~~~-~~~v~---~~~~~~~~~~~~~~~~~~Sa~------~~~~i~e~f~~i~~~i~~~  152 (193)
                      . -.-++||.|..|...... ...+.   .....++.+..+-.|+..+..      ....+.+++..+-+.+.++
T Consensus       114 ~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  114 EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            1 123557777777544210 00111   122445666677777776666      2345666666666555554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.33  E-value=0.39  Score=37.53  Aligned_cols=101  Identities=18%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             EEEEEEeeCCCccccccch----hh---hc-----cCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            32 RIKLQLWDTAGQERFRSIT----KS---YY-----RNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      .+.+.+.||+|........    ..   ..     ...|..++|.|++.. +.+..+    ..+.+..   + +--+|.|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~-~~g~IlT  225 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---G-LTGIILT  225 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---C-CCEEEEE
Confidence            3678899999975432221    11   11     137899999999753 233322    2333222   1 2337899


Q ss_pred             CCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            99 KLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        99 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |.|...       ..-.+.......++|+..++  +|++++++-..-.+.+
T Consensus       226 KlDe~~-------~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~~~  267 (272)
T TIGR00064       226 KLDGTA-------KGGIILSIAYELKLPIKFIG--VGEKIDDLAPFDADWF  267 (272)
T ss_pred             ccCCCC-------CccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHHHH
Confidence            999643       33345556666788888877  6677877654444433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=93.31  E-value=1.4  Score=31.88  Aligned_cols=90  Identities=11%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCC
Q psy38            56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSG  135 (193)
Q Consensus        56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  135 (193)
                      ..|.++|++|.....|+..+..=+..+....-. +.-+ ++.+-....+   .-.+..++..+++..+.++++.+.-.+.
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVC-fl~t~a~~~~---~~sv~~~~V~kla~~y~~plL~~~le~~  138 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVC-FLATNAGRES---HCSVHPNEVRKLAATYNSPLLFADLENE  138 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceE-EEEcCCCccc---ccccCHHHHHHHHHHhCCCEEEeecccc
Confidence            469999999999999999887766666544322 3444 5555555444   3568899999999999999998776665


Q ss_pred             cCHHHHHHHHHHHHHHHhc
Q psy38           136 FQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       136 ~~i~e~f~~i~~~i~~~~~  154 (193)
                      .+.    ..+.++++...+
T Consensus       139 ~~~----~~lAqRLL~~lq  153 (176)
T PF11111_consen  139 EGR----TSLAQRLLRMLQ  153 (176)
T ss_pred             hHH----HHHHHHHHHHHH
Confidence            444    455555555443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG0459|consensus

Probab=92.87  E-value=0.69  Score=38.04  Aligned_cols=112  Identities=15%  Similarity=0.072  Sum_probs=67.2

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      .-++.+.|.+|+..|......-..++|..+++.++-..   ..|+.=..-.+...........-.|++.||.|-+...+.
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence            35788999999999887666667788999999987321   123322111222222222333456789999997552211


Q ss_pred             CccC---HHHHHHHHHhC------CCcEEEecCCCCcCHHHHHH
Q psy38           109 REVS---EAEAKAFASQN------DILHFETSSRSGFQVENAFT  143 (193)
Q Consensus       109 ~~v~---~~~~~~~~~~~------~~~~~~~Sa~~~~~i~e~f~  143 (193)
                      ..-.   .+....|.+..      ...++.+|..+|.++.+.-.
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1111   12233344432      24688999999999987653

>PHA02518 ParA-like protein; Provisional

Probab=91.49  E-value=1.7  Score=32.02  Aligned_cols=68  Identities=12%  Similarity=0.051  Sum_probs=41.6

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      .+.+.|+|++|...  ......+..+|.+|++...+..  .....+..++..+... ......+.++.|+.+-
T Consensus        76 ~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         76 GYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV-TDGLPKFAFIISRAIK  145 (211)
T ss_pred             cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh-CCCCceEEEEEeccCC
Confidence            36789999998743  4566778889999999987632  2333444444444332 2222344467777653

>KOG0463|consensus

Probab=91.12  E-value=0.99  Score=36.89  Aligned_cols=30  Identities=17%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             HHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           119 FASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       119 ~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |..+.-|++|.+|..+|.|+. ++..++..+
T Consensus       327 F~Ser~CPIFQvSNVtG~NL~-LLkmFLNll  356 (641)
T KOG0463|consen  327 FPSERVCPIFQVSNVTGTNLP-LLKMFLNLL  356 (641)
T ss_pred             CccccccceEEeccccCCChH-HHHHHHhhc
Confidence            333344789999999999994 444444433

>KOG0448|consensus

Probab=90.73  E-value=1.5  Score=38.44  Aligned_cols=66  Identities=15%  Similarity=0.254  Sum_probs=43.5

Q ss_pred             EEEEeeCCCcc---ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            34 KLQLWDTAGQE---RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        34 ~l~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      .+.+.|.||..   ...+....+..++|++|+|..+.+..+..+ ..++...-    ...+-|.++-||.|...
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs----~~KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS----EEKPNIFILNNKWDASA  275 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh----ccCCcEEEEechhhhhc
Confidence            46788999864   344455778889999999998876443322 22333222    23466778889999865

>PRK14974 cell division protein FtsY; Provisional

Probab=90.61  E-value=1.9  Score=34.75  Aligned_cols=103  Identities=15%  Similarity=0.011  Sum_probs=59.5

Q ss_pred             EEEEEeeCCCcccccc-ch---hhh--ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRS-IT---KSY--YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  106 (193)
                      +.+.+.||+|...... +.   ...  .-+.|..++|.|++...   +.......+....   ...- ++.||.|...  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~---~~~g-iIlTKlD~~~--  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV---GIDG-VILTKVDADA--  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC---CCCE-EEEeeecCCC--
Confidence            4588999999754221 11   111  22578889999987543   2222122222211   2344 7899999743  


Q ss_pred             CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           107 VPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                           ..-.+...+...+.|+..++  +|++++++...=.+.+.+
T Consensus       294 -----~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~  331 (336)
T PRK14974        294 -----KGGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVD  331 (336)
T ss_pred             -----CccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHH
Confidence                 22334455666788888877  688888876544444433

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=90.55  E-value=1.8  Score=33.69  Aligned_cols=79  Identities=15%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH
Q psy38            34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE  113 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~  113 (193)
                      .+-+.|++-.-.  --.-..+.++|.+|+|=..| +..+.++...++-....    .+|..+|.||.++..       + 
T Consensus       165 ~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f----~ip~~iViNr~~~g~-------s-  229 (284)
T COG1149         165 DLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF----GIPTGIVINRYNLGD-------S-  229 (284)
T ss_pred             ceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh----CCceEEEEecCCCCc-------h-
Confidence            455666643211  11245678899999887765 56788887766655554    478889999996532       2 


Q ss_pred             HHHHHHHHhCCCcEE
Q psy38           114 AEAKAFASQNDILHF  128 (193)
Q Consensus       114 ~~~~~~~~~~~~~~~  128 (193)
                       +..+++.+.+++++
T Consensus       230 -~ie~~~~e~gi~il  243 (284)
T COG1149         230 -EIEEYCEEEGIPIL  243 (284)
T ss_pred             -HHHHHHHHcCCCee
Confidence             66778888877655

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=90.32  E-value=4.5  Score=31.78  Aligned_cols=106  Identities=20%  Similarity=0.239  Sum_probs=50.7

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-------ccch-------hhhc-------------cCccEEEEEEeC
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-------RSIT-------KSYY-------------RNSVGALLVYDI   66 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~-------~~~~-------------~~~d~~i~v~d~   66 (193)
                      ++..+......+.- ++..+.+.++||+|-...       ..+.       ..++             ..+|+++++.+.
T Consensus        45 ~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~p  123 (281)
T PF00735_consen   45 RTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPP  123 (281)
T ss_dssp             SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-T
T ss_pred             cccceeeEEEEecc-CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcC
Confidence            34444444445554 778899999999983210       0000       0011             137999999998


Q ss_pred             CChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhCCCcEEE
Q psy38            67 TSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFASQNDILHFE  129 (193)
Q Consensus        67 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~~~~~~  129 (193)
                      +.. .+..+ ...+..+..     ..++|.|+.|+|....   .++  ......+-....++.+|.
T Consensus       124 t~~-~L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~lt~---~el~~~k~~i~~~l~~~~I~~f~  180 (281)
T PF00735_consen  124 TGH-GLKPLDIEFMKRLSK-----RVNVIPVIAKADTLTP---EELQAFKQRIREDLEENNIKIFD  180 (281)
T ss_dssp             TSS-SS-HHHHHHHHHHTT-----TSEEEEEESTGGGS-H---HHHHHHHHHHHHHHHHTT--S--
T ss_pred             CCc-cchHHHHHHHHHhcc-----cccEEeEEecccccCH---HHHHHHHHHHHHHHHHcCceeec
Confidence            652 11111 122233332     3688899999997431   111  122233334456776664

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=90.30  E-value=1.3  Score=35.44  Aligned_cols=102  Identities=19%  Similarity=0.130  Sum_probs=58.6

Q ss_pred             EEEEEEeeCCCccccccc----hhhh--------ccCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            32 RIKLQLWDTAGQERFRSI----TKSY--------YRNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      .+.+.+.||+|.......    ...+        -...+..++|.|++.. +.+..+..    .....    .+--+|.|
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~~----~~~giIlT  267 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEAV----GLTGIILT  267 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhhC----CCCEEEEE
Confidence            367899999997542221    1111        1246778899998853 23333222    22211    22348899


Q ss_pred             CCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            99 KLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        99 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |.|...       ..-.+...+...++|+..++  +|++++++-..-.+.+.
T Consensus       268 KlD~t~-------~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~  310 (318)
T PRK10416        268 KLDGTA-------KGGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFV  310 (318)
T ss_pred             CCCCCC-------CccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHH
Confidence            999432       23344566677789988888  66778776544333333

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=90.16  E-value=0.71  Score=35.94  Aligned_cols=95  Identities=19%  Similarity=0.153  Sum_probs=51.1

Q ss_pred             CccEEEEEEeCCCh-----h--HHhh----HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC--CCccCHHHHHHHHHh
Q psy38            56 NSVGALLVYDITSR-----A--SFEH----IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV--PREVSEAEAKAFASQ  122 (193)
Q Consensus        56 ~~d~~i~v~d~~~~-----~--s~~~----~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~~v~~~~~~~~~~~  122 (193)
                      ..+|+|+++|+.+-     +  .+..    ++.-+.++.... .-..||.+|.||+|+..-..  -...+.+   ...+-
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~l-g~~~PVYvv~Tk~D~l~GF~ef~~~L~~~---~r~q~  100 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTL-GVRLPVYVVFTKCDLLPGFDEFFSDLSEE---EREQV  100 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHh-CCCCCeEeeeECCCcccCHHHHHHhCCHH---HHhCC
Confidence            46999999998641     1  1222    233444444443 33689999999999854210  0111111   12233


Q ss_pred             CCCcEEEecCCCCcC---HHHHHHHHHHHHHHHhc
Q psy38           123 NDILHFETSSRSGFQ---VENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       123 ~~~~~~~~Sa~~~~~---i~e~f~~i~~~i~~~~~  154 (193)
                      +|+.+=.-....+..   +++.|+.+...+.....
T Consensus       101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  135 (266)
T PF14331_consen  101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVL  135 (266)
T ss_pred             cccccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            454322222333334   77778877777766543

>KOG2484|consensus

Probab=90.15  E-value=0.56  Score=38.36  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             ccccchhhhccCccEEEEEEeCCChhHHh--hHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            45 RFRSITKSYYRNSVGALLVYDITSRASFE--HIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        45 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      .|..-....++.+|++|.|.|+-||.+-.  ++..|+.+-     .++...|+|.||+||.
T Consensus       135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLV  190 (435)
T KOG2484|consen  135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLV  190 (435)
T ss_pred             HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccC
Confidence            34444556677899999999999986433  234443211     2335677999999993

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=90.04  E-value=5.7  Score=28.72  Aligned_cols=85  Identities=11%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             ccCccEEEEEEeCCC-------hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc
Q psy38            54 YRNSVGALLVYDITS-------RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL  126 (193)
Q Consensus        54 ~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~  126 (193)
                      ++...+=.+++|.+|       .+-..++..|+.++......  ..++||.|-+-..     .......+..+.+..+++
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~--~~v~IvSNsaGs~-----~d~~~~~a~~~~~~lgIp  108 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGK--DRVLIVSNSAGSS-----DDPDGERAEALEKALGIP  108 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCC--CeEEEEECCCCcc-----cCccHHHHHHHHHhhCCc
Confidence            445555566777765       12344678899999976421  2477899876432     235678888899999999


Q ss_pred             EEEecCCCCcCHHHHHHHH
Q psy38           127 HFETSSRSGFQVENAFTAV  145 (193)
Q Consensus       127 ~~~~Sa~~~~~i~e~f~~i  145 (193)
                      ++.-+++...+..++...+
T Consensus       109 vl~h~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen  109 VLRHRAKKPGCFREILKYF  127 (168)
T ss_pred             EEEeCCCCCccHHHHHHHH
Confidence            9877787776666655544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=89.36  E-value=1.9  Score=29.84  Aligned_cols=65  Identities=9%  Similarity=0.088  Sum_probs=44.5

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      +.+.++|+++...  ......+..+|.++++.+.+ ..++..+...++.+....  ...++.+|.|+.+-
T Consensus        45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            5678999987532  33456788999999999875 455666555555555432  23456689999874

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=89.25  E-value=9.3  Score=31.14  Aligned_cols=110  Identities=18%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---ccch-----------hhh------------cc--CccEEEEE
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---RSIT-----------KSY------------YR--NSVGALLV   63 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---~~~~-----------~~~------------~~--~~d~~i~v   63 (193)
                      ..||+.+.+....+.- +|..+.|.+.||+|--++   ..-|           ..|            +.  .++++++.
T Consensus        62 ~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYF  140 (373)
T COG5019          62 TSPTLEIKITKAELEE-DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYF  140 (373)
T ss_pred             CCcceEEEeeeeeeec-CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEE
Confidence            5678877888777777 888999999999984221   1111           111            11  36899999


Q ss_pred             EeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38            64 YDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE  129 (193)
Q Consensus        64 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (193)
                      ...+.. .+..+ ...+..+...     ..+|-|+.|+|...... .....+...+-....++++|.
T Consensus       141 I~Ptgh-~l~~~DIe~Mk~ls~~-----vNlIPVI~KaD~lT~~E-l~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         141 IRPTGH-GLKPLDIEAMKRLSKR-----VNLIPVIAKADTLTDDE-LAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             ecCCCC-CCCHHHHHHHHHHhcc-----cCeeeeeeccccCCHHH-HHHHHHHHHHHHHHhCCceeC
Confidence            987642 22222 1223334333     46778899999744210 011122333344446676663

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=89.18  E-value=6.2  Score=28.03  Aligned_cols=84  Identities=10%  Similarity=-0.107  Sum_probs=51.2

Q ss_pred             EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH
Q psy38            34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE  113 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~  113 (193)
                      .+.++|+++....  .....+..+|.+|++.+.+. .++..+..+++.+...   ....+.+|.|+.+-..     ....
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~-----~~~~  132 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM-----VEGG  132 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc-----cchh
Confidence            5889999876432  23455678999999998753 4566666666655542   2245668999988533     1122


Q ss_pred             HHHHHHHHhCCCcEE
Q psy38           114 AEAKAFASQNDILHF  128 (193)
Q Consensus       114 ~~~~~~~~~~~~~~~  128 (193)
                      +....+.+..+.+++
T Consensus       133 ~~~~~~~~~~~~~v~  147 (179)
T cd02036         133 DMVEDIEEILGVPLL  147 (179)
T ss_pred             hHHHHHHHHhCCCEE
Confidence            223345555566554

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=89.06  E-value=4.5  Score=32.94  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.+.++|.+  .........++.++|-+++|.+.+ -.++....+.+..+++.......|. +|.|+.+...
T Consensus       216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~-lv~n~~~~~~  285 (366)
T COG4963         216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPI-LVLNRVGVPK  285 (366)
T ss_pred             ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCce-EEeeecCCCC
Confidence            34667889988  334456688999999999999875 4577778888888888765555555 9999998644

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=88.18  E-value=2.9  Score=36.94  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=42.7

Q ss_pred             CCcEEEEEEeeCCCccccc-------cc---hhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCC-CCeEEE
Q psy38            29 DGARIKLQLWDTAGQERFR-------SI---TKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH-RPVFAL   95 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~-------~~---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piil   95 (193)
                      +|  ..+.|+||+|.....       ..   ...++.  ..|++++|.+++......+-..++..|....+.. -.-+||
T Consensus       164 dG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIV  241 (763)
T TIGR00993       164 QG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIV  241 (763)
T ss_pred             CC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEE
Confidence            55  568999999975431       11   122333  5899999998764322212234555555544421 134568


Q ss_pred             EeeCCCCCC
Q psy38            96 VGCKLDLLQ  104 (193)
Q Consensus        96 v~nK~Dl~~  104 (193)
                      |.|..|...
T Consensus       242 VFThgD~lp  250 (763)
T TIGR00993       242 TLTHAASAP  250 (763)
T ss_pred             EEeCCccCC
Confidence            889988753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=87.69  E-value=3.7  Score=26.95  Aligned_cols=63  Identities=10%  Similarity=-0.056  Sum_probs=42.2

Q ss_pred             EEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      .+.+.|+++....  .....+..+|.++++.+.+ ..++..+..+++.+.+........+.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6789999876432  2345678899999998764 5677777777777766543312345577764

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=87.31  E-value=5.3  Score=34.39  Aligned_cols=71  Identities=10%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec--CCCCcCHHHHHHHHHHH
Q psy38            71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS--SRSGFQVENAFTAVTQE  148 (193)
Q Consensus        71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~e~f~~i~~~  148 (193)
                      .+.++.+.++.+..+    ..|+++++||.|...     +-..+..+++|.+.++++..+.  ++-|.|-.++-+.+++.
T Consensus       357 Gl~NL~RHIenvr~F----GvPvVVAINKFd~DT-----e~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA  427 (557)
T PRK13505        357 GFANLERHIENIRKF----GVPVVVAINKFVTDT-----DAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVEL  427 (557)
T ss_pred             HHHHHHHHHHHHHHc----CCCEEEEEeCCCCCC-----HHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHH
Confidence            456677777767654    478889999999854     1245667789999999877443  55677888887777776


Q ss_pred             HH
Q psy38           149 IY  150 (193)
Q Consensus       149 i~  150 (193)
                      +.
T Consensus       428 ~~  429 (557)
T PRK13505        428 IE  429 (557)
T ss_pred             Hh
Confidence            54

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=86.82  E-value=1.3  Score=41.77  Aligned_cols=69  Identities=23%  Similarity=0.189  Sum_probs=45.4

Q ss_pred             EEEeeCCCcc--------ccccchhhhcc---------CccEEEEEEeCCCh-----hH----HhhHHHHHHHHHHhcCC
Q psy38            35 LQLWDTAGQE--------RFRSITKSYYR---------NSVGALLVYDITSR-----AS----FEHIPVWMMEAKRHIEP   88 (193)
Q Consensus        35 l~l~D~~g~~--------~~~~~~~~~~~---------~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~   88 (193)
                      -.++||+|.-        .....|..++.         ..+++|+++|+.+-     +.    -..++..+.++....+ 
T Consensus       163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-  241 (1169)
T TIGR03348       163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-  241 (1169)
T ss_pred             EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            4588999831        12233444433         58999999999752     11    1244666777776654 


Q ss_pred             CCCeEEEEeeCCCCCC
Q psy38            89 HRPVFALVGCKLDLLQ  104 (193)
Q Consensus        89 ~~~piilv~nK~Dl~~  104 (193)
                      -..||.+|.||+|+..
T Consensus       242 ~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       242 ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCCEEEEEecchhhc
Confidence            3689999999999853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG2423|consensus

Probab=83.73  E-value=5.5  Score=33.01  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             chhhhc---cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC
Q psy38            49 ITKSYY---RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI  125 (193)
Q Consensus        49 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~  125 (193)
                      .|...|   ..+|++|-|.|+-||..  .--..++.......+ ..-+|+|.||+||.-    -.++..=...+.+.+--
T Consensus       203 IW~ELyKViDSSDVvvqVlDARDPmG--Trc~~ve~ylkke~p-hKHli~vLNKvDLVP----twvt~~Wv~~lSkeyPT  275 (572)
T KOG2423|consen  203 IWGELYKVIDSSDVVVQVLDARDPMG--TRCKHVEEYLKKEKP-HKHLIYVLNKVDLVP----TWVTAKWVRHLSKEYPT  275 (572)
T ss_pred             HHHHHHHhhcccceeEEeeeccCCcc--cccHHHHHHHhhcCC-cceeEEEeecccccc----HHHHHHHHHHHhhhCcc
Confidence            454444   47899999999988642  111223333333323 344569999999954    33444444455555443


Q ss_pred             cEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           126 LHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       126 ~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      --|..|..+..|=..+. .++++.-+
T Consensus       276 iAfHAsi~nsfGKgalI-~llRQf~k  300 (572)
T KOG2423|consen  276 IAFHASINNSFGKGALI-QLLRQFAK  300 (572)
T ss_pred             eeeehhhcCccchhHHH-HHHHHHHh
Confidence            44555655555543332 33344433

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=81.61  E-value=9.8  Score=31.98  Aligned_cols=85  Identities=16%  Similarity=0.028  Sum_probs=48.6

Q ss_pred             EEEEeeCCCccccccch----h--hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC
Q psy38            34 KLQLWDTAGQERFRSIT----K--SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV  107 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~  107 (193)
                      .+.+.||+|........    .  ..+..+|.+++|.|++...   +.......+....   .. --+|.||.|-..   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i-~gvIlTKlD~~a---  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GI-GGIIITKLDGTA---  246 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CC-CEEEEecccCCC---
Confidence            68899999976533211    1  1133578899999987642   2222222222221   12 236789999643   


Q ss_pred             CCccCHHHHHHHHHhCCCcEEEecC
Q psy38           108 PREVSEAEAKAFASQNDILHFETSS  132 (193)
Q Consensus       108 ~~~v~~~~~~~~~~~~~~~~~~~Sa  132 (193)
                          ..-.+...+...+.|+..++.
T Consensus       247 ----~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 ----KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ----cccHHHHHHHHHCcCEEEEec
Confidence                234455666667777666554

>KOG2486|consensus

Probab=81.46  E-value=0.82  Score=35.77  Aligned_cols=109  Identities=14%  Similarity=0.028  Sum_probs=57.5

Q ss_pred             EEEEeeCCCc----------cccccchhhhccCcc---EEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38            34 KLQLWDTAGQ----------ERFRSITKSYYRNSV---GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL  100 (193)
Q Consensus        34 ~l~l~D~~g~----------~~~~~~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  100 (193)
                      .+.+.|.+|-          +.+..+...|+.+-+   -++++.|++-+  ++....   .+.+.....+.|+.+|.||+
T Consensus       184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~---~~i~~~ge~~VP~t~vfTK~  258 (320)
T KOG2486|consen  184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--IQPTDN---PEIAWLGENNVPMTSVFTKC  258 (320)
T ss_pred             eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--CCCCCh---HHHHHHhhcCCCeEEeeehh
Confidence            4667888881          223333344444322   24445555432  222222   12222334568999999999


Q ss_pred             CCCCCCC---CCccCH-----HHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38           101 DLLQSGV---PREVSE-----AEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       101 Dl~~~~~---~~~v~~-----~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      |...+..   .+....     ......+.....+++.+|+.++.|++++.--|..
T Consensus       259 DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  259 DKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            9754321   111111     1111122223457888999999999988766654

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=80.89  E-value=21  Score=27.45  Aligned_cols=68  Identities=10%  Similarity=0.012  Sum_probs=40.2

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE-EEEeeCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF-ALVGCKLD  101 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D  101 (193)
                      .+.+.|+||+|.-.... ....+.-+|.+|++... +..++..+...+..+.........++ -+|.|+.+
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~  185 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA  185 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence            46788999976533221 22346678999998865 45556666555554443222233443 37888865

>TIGR00959 ffh signal recognition particle protein

Probab=80.68  E-value=11  Score=31.54  Aligned_cols=86  Identities=17%  Similarity=0.012  Sum_probs=50.3

Q ss_pred             EEEEEeeCCCccccccc-hh---h--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSI-TK---S--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  106 (193)
                      +.+.|.||+|....... ..   .  ..-..+.+++|.|.+..   +++..+...+.....   +-- +|.||.|-..  
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~---i~g-iIlTKlD~~~--  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG---LTG-VVLTKLDGDA--  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC---CCE-EEEeCccCcc--
Confidence            56889999996443221 11   1  12246888999998753   334444444443321   223 6799999532  


Q ss_pred             CCCccCHHHHHHHHHhCCCcEEEecC
Q psy38           107 VPREVSEAEAKAFASQNDILHFETSS  132 (193)
Q Consensus       107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa  132 (193)
                           ..-.+...+...++|+..++.
T Consensus       254 -----~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 -----RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             -----cccHHHHHHHHHCcCEEEEeC
Confidence                 223366777777887776554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1547|consensus

Probab=80.05  E-value=26  Score=27.21  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---ccch-----------hhh------------cc--CccEEEEE
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---RSIT-----------KSY------------YR--NSVGALLV   63 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---~~~~-----------~~~------------~~--~~d~~i~v   63 (193)
                      +..|+.+...+..+.- +|-...+.+.||+|--+.   ..-|           ..|            +.  .++++++.
T Consensus        84 ~pkT~eik~~thvieE-~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyF  162 (336)
T KOG1547|consen   84 IPKTTEIKSITHVIEE-KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYF  162 (336)
T ss_pred             ccceEEEEeeeeeeee-cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEE
Confidence            4445556666666665 777888999999984211   1111           112            22  36788888


Q ss_pred             EeCCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC
Q psy38            64 YDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS  134 (193)
Q Consensus        64 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  134 (193)
                      ...+.- ++.-+ ..+++.+.+.     ..++-|+-|+|-..- ..+....+..++-...+++.+|.--+.+
T Consensus       163 i~ptGh-sLrplDieflkrLt~v-----vNvvPVIakaDtlTl-eEr~~FkqrI~~el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  163 IPPTGH-SLRPLDIEFLKRLTEV-----VNVVPVIAKADTLTL-EERSAFKQRIRKELEKHGIDVYPQDSFD  227 (336)
T ss_pred             eCCCCC-ccCcccHHHHHHHhhh-----heeeeeEeecccccH-HHHHHHHHHHHHHHHhcCcccccccccc
Confidence            877642 23323 2233333332     456678899995220 0122223334444445777766544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-33
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-32
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-30
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-30
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-30
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-30
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-28
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-27
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-26
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-26
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-26
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-26
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-26
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		8e-26
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		9e-26
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-25
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-25
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-25
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-25
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-25
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-25
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-25
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-25
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-24
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-24
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-24
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-24
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-24
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-24
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-24
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-24
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		5e-24
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		5e-24
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		9e-24
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-23
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-23
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-23
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-23
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-23
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-22
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-22
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-22
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-22
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-21
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-21
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-21
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-21
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-21
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-20
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-20
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-20
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-20
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-20
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-20
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-20
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-20
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-20
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-20
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-20
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		4e-20
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-20
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-20
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-20
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-19
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-19
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-19
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-19
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-19
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-19
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-19
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-19
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-19
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-19
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-19
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		9e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		9e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		9e-19
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		9e-19
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-18
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-18
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-18
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-18
1vg1_A	185	Gdp-bound Rab7 Length = 185		5e-18
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-17
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-17
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-17
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-17
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-17
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-16
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-16
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-16
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-15
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		8e-15
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-14
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		5e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-13
1byu_A	216	Canine Gdp-Ran Length = 216		7e-13
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-12
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-12
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-12
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-12
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		5e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-12
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		6e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-12
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		7e-12
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		9e-12
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-11
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-11
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-11
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-11
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-11
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-11
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-11
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		8e-11
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		9e-11
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-10
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-10
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-10
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-10
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-10
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-09
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-09
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-09
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-09
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-09
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		7e-09
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		7e-09
1mh1_A	186	Small G-Protein Length = 186		7e-09
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-09
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-09
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		8e-09
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		9e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-08
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-08
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-08
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-08
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-08
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-08
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-08
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-08
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-08
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-08
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-08
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-08
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-08
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-08
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-08
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-08
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-08
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-08
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-08
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-08
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-08
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		7e-08
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		7e-08
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		7e-08
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		8e-08
1s1c_A	183	Crystal Structure Of The Complex Between The Human		8e-08
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		8e-08
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		8e-08
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		8e-08
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		8e-08
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		9e-08
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		9e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		9e-08
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-07
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-07
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-07
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-07
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-07
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-07
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-07
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-07
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-07
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-07
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-07
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-07
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-07
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-07
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-07
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-07
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-07
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-07
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-07
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		4e-07
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-07
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		9e-07
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-06
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-06
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		6e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-05
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-05
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		1e-04
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-04
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-04
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-04
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-04
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-04
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-04
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-04
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-04
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-04
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-04
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-04
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-04
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-04
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-04
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-04
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-04
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-04
2kb0_A	178	Cdc42(T35a) Length = 178		2e-04
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-04
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-04
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-04
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-04
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-04
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-04
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-04
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-04
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-04
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		5e-04
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		8e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		8e-04
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-04

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR+V + DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 49  VHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 107
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H      V  L+G K DL      R+V   E +AFA ++ ++  ET
Sbjct: 108 TFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESR---RDVKREEGEAFAREHGLIFMET 163
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSG 156
           S+++   VE AF    +EIY ++Q G
Sbjct: 164 SAKTACNVEEAFINTAKEIYRKIQQG 189

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 5/142 (3%)
Query: 11  ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           + D T+GV+F AR++T+ DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT R 
Sbjct: 38  VHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD 96
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +F H+  W+ +A++H   +  V  L+G K DL      REV + E +AFA ++ ++  ET
Sbjct: 97  TFNHLTTWLEDARQHSNSN-MVIMLIGNKSDLESR---REVKKEEGEAFAREHGLIFMET 152
Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
           S+++   VE AF    +EIY +
Sbjct: 153 SAKTASNVEEAFINTAKEIYEK 174

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 99/154 (64%), Gaps = 5/154 (3%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + Q S+ T+GV+F +R+V +  G  +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDIT
Sbjct: 50  FKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 108
Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           SR ++  +  W+ +A+    P+  V  L G K DL      REV+  EA  FA +N+++ 
Sbjct: 109 SRETYNSLAAWLTDARTLASPN-IVVILCGNKKDL---DPEREVTFLEASRFAQENELMF 164
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVE 161
            ETS+ +G  VE AF    + I N++ SG+   E
Sbjct: 165 LETSALTGENVEEAFLKCARTILNKIDSGELDPE 198

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 94/140 (67%), Gaps = 5/140 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  R++ +  G +IKLQ+WDTAGQ RFR++T+SYYR + GAL+VYDIT R+++ H
Sbjct: 62  TIGVEFGTRIIEV-SGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNH 120
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ +A+    P+  V  L+G K DL      R+V+  EAK FA +N +L  E S+++
Sbjct: 121 LSSWLTDARNLTNPN-TVIILIGNKADL---EAQRDVTYEEAKQFAEENGLLFLEASAKT 176
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
           G  VE+AF    ++IY  +Q
Sbjct: 177 GENVEDAFLEAAKKIYQNIQ 196

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S+ T+GV+F ++++ +  G  +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDITSR +
Sbjct: 39  SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 97
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +  +  W+ +A R +     V  L G K DL      REV+  EA  FA +N+++  ETS
Sbjct: 98  YNALTNWLTDA-RMLASQNIVIILCGNKKDL---DADREVTFLEASRFAQENELMFLETS 153
Query: 132 SRSGFQVENAFTAVTQEIYNRVQSGD 157
           + +G  VE AF    ++I N+++SG+
Sbjct: 154 ALTGENVEEAFVQCARKILNKIESGE 179

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 5/136 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  R++ +  G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT R+++ H
Sbjct: 47  TIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH 105
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ +A+    P+  V  L+G K DL      R+V+  EAK FA +N +L  E S+++
Sbjct: 106 LSSWLTDARNLTNPN-TVIILIGNKADL---EAQRDVTYEEAKQFAEENGLLFLEASAKT 161
Query: 135 GFQVENAFTAVTQEIY 150
           G  VE+AF    ++IY
Sbjct: 162 GENVEDAFLEAAKKIY 177

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 92/141 (65%), Gaps = 5/141 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S+ T+GV+F ++++ +  G  +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDITSR +
Sbjct: 40  SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 98
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +  +  W+ +A R +     V  L G K DL      REV+  EA  FA +N+++  ETS
Sbjct: 99  YNALTNWLTDA-RMLASQNIVIILCGNKKDL---DADREVTFLEASRFAQENELMFLETS 154
Query: 132 SRSGFQVENAFTAVTQEIYNR 152
           + +G  VE AF    ++I N+
Sbjct: 155 ALTGEDVEEAFVQCARKILNK 175

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 5/141 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S+ T+GV+F ++++ +  G  +KLQ+WDTAG ERFRS+T+SYYR + GALLVYDITSR +
Sbjct: 37  SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRET 95
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +  +  W+ +A R +     V  L G K DL      REV+  EA  FA +N+++  ETS
Sbjct: 96  YNALTNWLTDA-RMLASQNIVIILCGNKKDL---DADREVTFLEASRFAQENELMFLETS 151
Query: 132 SRSGFQVENAFTAVTQEIYNR 152
           + +G  VE AF    ++I N+
Sbjct: 152 ALTGEDVEEAFVQCARKILNK 172

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAGQER+R IT +YYR +VGALLVYDI    +
Sbjct: 34  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT 92
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N++   ETS
Sbjct: 93  YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETS 148
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 149 ALDSTNVEEAFKNILTEIY 167

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAGQER+R+IT +YYR +VGALLVYDI    +
Sbjct: 49  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 107
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +   ETS
Sbjct: 108 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 163
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 164 ALDSTNVEAAFQTILTEIY 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAGQER+R+IT +YYR +VGALLVYDI    +
Sbjct: 58  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT 116
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +   ETS
Sbjct: 117 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 172
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 173 ALDSTNVEAAFQTILTEIY 191

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 6/139 (4%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + + ++ G R+KLQ+WDTAGQERFR+IT+SYYR++ GA+L YDIT R+SF  
Sbjct: 61  TIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSR 133
           +P W+ + +++   +  V  L+G K DL +    REVS AEA++ A   DIL   ETS++
Sbjct: 120 VPHWIEDVRKYAGSN-IVQLLIGNKSDLSE---LREVSLAEAQSLAEHYDILCAIETSAK 175
Query: 134 SGFQVENAFTAVTQEIYNR 152
               VE AF  V  E+  R
Sbjct: 176 DSSNVEEAFLRVATELIMR 194

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  + + +++   IK Q+WDTAGQER+R+IT +YYR +VGALLVYDIT + S
Sbjct: 36  SKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNS 95
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           FE+I  W+ E + + + +  V  LVG K DL      R +++ +A  +A +  +   ETS
Sbjct: 96  FENIEKWLKELRDNADSN-IVILLVGNKSDLKH---LRVINDNDATQYAKKEKLAFIETS 151
Query: 132 SRSGFQVENAFTAVTQEIYN 151
           +     VE AF  +  EIYN
Sbjct: 152 ALEATNVELAFHQLLNEIYN 171

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 90/139 (64%), Gaps = 5/139 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            TVG+DF  +++ + DG ++KLQ+WDTAGQERFRS+T +YYR++   LL+YD+T++ASF+
Sbjct: 42  STVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           +I  W+ E   + + H     L+G K+D   S   R V   + +  A +  +   ETS++
Sbjct: 101 NIQAWLTEIHEYAQ-HDVALMLLGNKVD---SAHERVVKREDGEKLAKEYGLPFMETSAK 156
Query: 134 SGFQVENAFTAVTQEIYNR 152
           +G  V+ AFTA+ +E+  R
Sbjct: 157 TGLNVDLAFTAIAKELKRR 175

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + +G RIK Q+WDTAGQER+R+IT +YYR +VGAL+VYDI+  +S
Sbjct: 42  SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS 100
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E+   W+ E + + + +  V  L+G K DL      R V   E+K FA +N +L  ETS
Sbjct: 101 YENCNHWLSELRENADDNVAV-GLIGNKSDLAH---LRAVPTEESKTFAQENQLLFTETS 156
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
           + +   V+ AF  +   IY +V
Sbjct: 157 ALNSENVDKAFEELINTIYQKV 178

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI    +
Sbjct: 40  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 98
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +   ETS
Sbjct: 99  YENVERWLKELRDHADSN-IVIXLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 154
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 155 ALDSTNVEAAFQTILTEIY 173

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI    +
Sbjct: 37  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 95
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +   ETS
Sbjct: 96  YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 151
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 152 ALDSTNVEAAFQTILTEIY 170

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI    +
Sbjct: 34  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 92
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +   ETS
Sbjct: 93  YENVERWLKELRDHADSN-IVIXLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 148
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 149 ALDSTNVEAAFQTILTEIY 167

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R +++ +   +KLQ+WDTAGQERFR+IT SYYR + G ++VYD+T R SF+
Sbjct: 40  STIGVDFKIRTISLENKT-VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFD 98
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++  W+ E  R+   +     LVG K DL+     R V+  E +  A  + I   ETS++
Sbjct: 99  NVKQWIQEIDRYAMENVNKL-LVGNKCDLVS---KRVVTSDEGRELADSHGIKFIETSAK 154
Query: 134 SGFQVENAFTAVTQEIYNRVQ 154
           + + VE AF  +  EI  RVQ
Sbjct: 155 NAYNVEQAFHTMAGEIKKRVQ 175

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + DG  IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI    +
Sbjct: 58  SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 116
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +   ETS
Sbjct: 117 YENVERWLKELRDHADSN-IVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETS 172
Query: 132 SRSGFQVENAFTAVTQEIY 150
           +     VE AF  +  EIY
Sbjct: 173 ALDSTNVEAAFQTILTEIY 191

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + V + +G ++KLQ+WDTAGQERFRSIT+SYYR++   +L YDIT   SF  
Sbjct: 58  TIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 116
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W+ E +++   ++ +  LVG K+DL +    REVS+  A+ F+   D+ + ETS++ 
Sbjct: 117 LPEWLREIEQY-ASNKVITVLVGNKIDLAER---REVSQQRAEEFSEAQDMYYLETSAKE 172
Query: 135 GFQVENAF 142
              VE  F
Sbjct: 173 SDNVEKLF 180

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R V M   A +K Q+WDTAG ER+R+IT +YYR +VGALLV+D+T   +
Sbjct: 39  SRTTIGVEFSTRTV-MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 97
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +  +  W+ E   H E    V  LVG K DL Q+   REV   EA+ FA  N +L  ETS
Sbjct: 98  YAVVERWLKELYDHAEA-TIVVMLVGNKSDLSQA---REVPTEEARMFAENNGLLFLETS 153
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
           +     VE AF  V +EI+ +V
Sbjct: 154 ALDSTNVELAFETVLKEIFAKV 175

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R V M   A +K Q+WDTAG ER+R+IT +YYR +VGALLV+D+T   +
Sbjct: 54  SRTTIGVEFSTRTV-MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 112
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +  +  W+ E   H E    V  LVG K DL Q+   REV   EA+ FA  N +L  ETS
Sbjct: 113 YAVVERWLKELYDHAEA-TIVVMLVGNKSDLSQA---REVPTEEARMFAENNGLLFLETS 168
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
           +     VE AF  V +EI+ +V
Sbjct: 169 ALDSTNVELAFETVLKEIFAKV 190

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 18/160 (11%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G+DF  R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT+  SF+
Sbjct: 39  STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 97
Query: 74  HIPVWMMEAKRHIEPHRPVFA---LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +I  W+    R+IE H        ++G K D+      R+VS+   +  A    I   ET
Sbjct: 98  NIRNWI----RNIEEHASADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMET 150
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
           S+++   VENAF  + ++I         K++  W+    G
Sbjct: 151 SAKANINVENAFFTLARDI-------KAKMDKNWKATAAG 183

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 11/139 (7%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G+DF  R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT+  SF+
Sbjct: 37  STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 95
Query: 74  HIPVWMMEAKRHIEPHRPVFA---LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +I  W+    R+IE H        ++G K D+      R+VS+   +  A    I   ET
Sbjct: 96  NIRNWI----RNIEEHASADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMET 148
Query: 131 SSRSGFQVENAFTAVTQEI 149
           S+++   VENAF  + ++I
Sbjct: 149 SAKANINVENAFFTLARDI 167

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 48  TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS+++
Sbjct: 107 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 162
Query: 135 GFQVENAFTAVTQEIYNRVQSG 156
              VE +F  +  EI  R+  G
Sbjct: 163 ATNVEQSFMTMAAEIKKRMGPG 184

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF 
Sbjct: 30  STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 88
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS++
Sbjct: 89  NVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAK 144
Query: 134 SGFQVENAFTAVTQEIYNRV 153
           +   VE +F  +  EI  R+
Sbjct: 145 NATNVEQSFMTMAAEIKKRM 164

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 40  TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 98
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS+++
Sbjct: 99  VKQWLQEIDRYASENVNKL-LVGIKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 154
Query: 135 GFQVENAFTAVTQEIYNRV 153
              VE +F  +  EI  R+
Sbjct: 155 ATNVEQSFMTMAAEIKKRM 173

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF 
Sbjct: 37  STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS++
Sbjct: 96  NVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAK 151
Query: 134 SGFQVENAFTAVTQEIYNRV 153
           +   VE +F  +  EI  R+
Sbjct: 152 NATNVEQSFMTMAAEIKKRM 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF 
Sbjct: 37  STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS++
Sbjct: 96  NVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAK 151
Query: 134 SGFQVENAFTAVTQEIYNRV 153
           +   VE +F  +  EI  R+
Sbjct: 152 NATNVEQSFMTMAAEIKKRM 171

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 48  TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS+++
Sbjct: 107 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 162
Query: 135 GFQVENAFTAVTQEIYNRV 153
              VE +F  +  EI  R+
Sbjct: 163 ATNVEQSFMTMAAEIKKRM 181

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 57  TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 115
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS+++
Sbjct: 116 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 171
Query: 135 GFQVENAFTAVTQEIYNRV 153
              VE +F  +  EI  R+
Sbjct: 172 ATNVEQSFMTMAAEIKKRM 190

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + S+ 
Sbjct: 40  STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS++
Sbjct: 99  NVKQWLQEIDRYASENVNKL-LVGNKSDLTTKKV---VDNTTAKEFADSLGIPFLETSAK 154
Query: 134 SGFQVENAFTAVTQEIYNRV 153
           +   VE AF  +  EI  R+
Sbjct: 155 NATNVEQAFMTMAAEIKKRM 174

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + S+ 
Sbjct: 40  STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS++
Sbjct: 99  NVKQWLQEIDRYASENVNKL-LVGNKSDLTTKKV---VDNTTAKEFADSLGIPFLETSAK 154
Query: 134 SGFQVENAFTAVTQEIYNRV 153
           +   VE AF  +  EI  R+
Sbjct: 155 NATNVEQAFMTMAAEIKKRM 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF +
Sbjct: 65  TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 123
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E  R+   +     LVG K DL    V   V    AK FA    I   ETS+++
Sbjct: 124 VKQWLQEIDRYASENVNKL-LVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKN 179
Query: 135 GFQVENAFTAVTQEIYNR 152
              VE +F     EI  R
Sbjct: 180 ATNVEQSFXTXAAEIKKR 197

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  + V + DG  +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T + SF 
Sbjct: 39  STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            + +W+ E  R+      +  LVG K DL      R V    AK FA  N +   ETS+ 
Sbjct: 98  GVKMWLQEIDRY-ATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 153
Query: 134 SGFQVENAFTAVTQEI 149
               VE+AF  + ++I
Sbjct: 154 DSTNVEDAFLTMARQI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  + V + DG  +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T + SF 
Sbjct: 39  STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            + +W+ E  R+      +  LVG K DL      R V    AK FA  N +   ETS+ 
Sbjct: 98  GVKMWLQEIDRY-ATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 153
Query: 134 SGFQVENAFTAVTQEI 149
               VE+AF  + ++I
Sbjct: 154 DSTNVEDAFLTMARQI 169

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +    TVGVDF  + V +R G +I+LQ+WDTAGQERF SIT +YYR++ G +LVYDIT
Sbjct: 51  FCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT 109
Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            + +F+ +P WM    ++      +  LVG KLD       RE++  + + FA Q   + 
Sbjct: 110 KKETFDDLPKWMKMIDKYASEDAELL-LVGNKLD---CETDREITRQQGEKFAQQITGMR 165
Query: 128 F-ETSSRSGFQVENAFTAVTQEIYNRV 153
           F E S++  F V+  F  +  +I  ++
Sbjct: 166 FCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  + V + DG  +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T + SF 
Sbjct: 52  STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 110
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            + +W+ E  R+      +  LVG K DL      R V    AK FA  N +   ETS+ 
Sbjct: 111 GVKMWLQEIDRY-ATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 166
Query: 134 SGFQVENAFTAVTQEI 149
               VE+AF  + ++I
Sbjct: 167 DSTNVEDAFLTMARQI 182

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +  +PT+G  F  + VT+ +   +K ++WDTAGQERF S+   YYRN+  AL+VYD+T
Sbjct: 28  FAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVT 86
Query: 68  SRASFEHIPVWMMEAKRHIEPHRP-VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
              SF     W+ E   H +  +  + ALVG K+D LQ G  R+V+  E +  A +  +L
Sbjct: 87  KPQSFIKARHWVKEL--HEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL 144
Query: 127 HFETSSRSGFQVENAFTAVTQEI 149
            FETS+++G  V + F  + ++I
Sbjct: 145 FFETSAKTGENVNDVFLGIGEKI 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           S  T+GV+F  R + + +  +IK Q+WDTAG ER+R+IT +YYR +VGAL+VYDI+  +S
Sbjct: 39  SKSTIGVEFATRTIEVEN-KKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSS 97
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           +E+   W+ E + + + +  V  L+G K DL      R V   EAK FA +N +L  ETS
Sbjct: 98  YENCNHWLTELRENADDNVAV-GLIGNKSDLAH---LRAVPTDEAKNFAMENQMLFTETS 153
Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
           + +   V+ AF  +   I+  V
Sbjct: 154 ALNSDNVDKAFRELIVAIFQMV 175

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +++  + T+G  FF++ + + D A +K ++WDTAGQER+ S+   YYR +  A++V+D+T
Sbjct: 37  FVEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT 95
Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           ++ASFE    W+ E +    P+  V AL G K DLL +   R+V+  +A+ +A +N +  
Sbjct: 96  NQASFERAKKWVQELQAQGNPNM-VMALAGNKSDLLDA---RKVTAEDAQTYAQENGLFF 151
Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQ 154
            ETS+++   V+  F  + + +  RVQ
Sbjct: 152 METSAKTATNVKEIFYEIARRL-PRVQ 177

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 8/135 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R V + +G ++KLQ+WDTAGQERFR+IT +YYR + G ++VYD+TS  SF 
Sbjct: 40  TTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE-AKAFASQNDILHFETSS 132
           ++  W+ E  ++ +    +  LVG K D       R+V E E A  FA Q  I  FETS+
Sbjct: 99  NVKRWLHEINQNCDDVCRI--LVGNKND----DPERKVVETEDAYKFAGQMGIQLFETSA 152
Query: 133 RSGFQVENAFTAVTQ 147
           +    VE  F  +T+
Sbjct: 153 KENVNVEEMFNCITE 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 12/149 (8%)
Query: 15  TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
           TVG+DF  + V       +G+     ++ LQLWDTAGQERFRS+T +++R+++G LL++D
Sbjct: 57  TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116
Query: 66  ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
           +TS+ SF ++  WM + + +     P   L+G K DL      REV+E +A+  A +  I
Sbjct: 117 LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ---REVNERQARELADKYGI 173
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            +FETS+ +G  VE A   +   I  R++
Sbjct: 174 PYFETSAATGQNVEKAVETLLDLIMKRME 202

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 5/135 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + +++ DG + KL +WDTAGQERFR++T SYYR + G +LVYD+T R +F  
Sbjct: 47  TIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E + +   +  V  LVG K+D       REV   E   FA ++  L  E S+++
Sbjct: 106 LDNWLNELETYCTRNDIVNXLVGNKIDKEN----REVDRNEGLKFARKHSXLFIEASAKT 161
Query: 135 GFQVENAFTAVTQEI 149
              V+ AF  + ++I
Sbjct: 162 CDGVQCAFEELVEKI 176

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
Query: 15  TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
           TVG+DF  + V  R    DGA     RI LQLWDTAG ERFRS+T +++R+++G LL++D
Sbjct: 43  TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFD 102
Query: 66  ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
           +T+  SF ++  W+ + + H     P   L G K DL      R V E EA+  A +  I
Sbjct: 103 LTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ---RAVKEEEARELAEKYGI 159
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            +FETS+ +G  + +A   +   I  R++
Sbjct: 160 PYFETSAANGTNISHAIEMLLDLIMKRME 188

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 17/167 (10%)
Query: 2   VTLLYLYIQIS-DP----TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFR 47
            T LY Y     +P    TVG+DF  + V       DGA     ++ LQLWDTAG ERFR
Sbjct: 25  TTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFR 84
Query: 48  SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107
           S+T +++R+++G LL++D+TS+ SF ++  WM + + +     P   L+G K DL     
Sbjct: 85  SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ-- 142
Query: 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            REV+E +A+  A +  I +FETS+ +G  VE +   +   I  R++
Sbjct: 143 -REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 12/149 (8%)
Query: 15  TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYD 65
           TVG+DF  + V       DGA     ++ LQLWDTAG ERFRS+T +++R+++G LL++D
Sbjct: 43  TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
Query: 66  ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI 125
           +TS+ SF ++  WM + + +     P   L+G K DL      REV+E +A+  A +  I
Sbjct: 103 LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ---REVNERQARELAEKYGI 159
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            +FETS+ +G  VE +   +   I  R++
Sbjct: 160 PYFETSAATGQNVEKSVETLLDLIMKRME 188

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 7/125 (5%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
           ++ T+GVDF  R V + DG RIK+QLWDTAGQERFR S+ + YYRN    + VYD+T+ A
Sbjct: 49  TEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 107
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-GVPREVSEAEAKAFASQNDILHFE 129
           SF  +P W+ E K+H+  +     LVG K DL  +  VP ++    A+ FA  + +  FE
Sbjct: 108 SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL----AQKFADTHSMPLFE 163
Query: 130 TSSRS 134
           TS+++
Sbjct: 164 TSAKN 168

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT++ +F
Sbjct: 38  ESTIGAAFLTQSVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETF 96
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                W+ E +R   P   V AL G K DL      R V   EA+A+A  N +L  ETS+
Sbjct: 97  ARAKTWVKELQRQASPS-IVIALAGNKADLANK---RMVEYEEAQAYADDNSLLFMETSA 152
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V + F A+ +++
Sbjct: 153 KTAMNVNDLFLAIAKKL 169

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
           ++ T+GVDF  R V + DG RIK+QLWDTAGQERFR S+ + YYRN    + VYD T+ A
Sbjct: 58  TEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXA 116
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-GVPREVSEAEAKAFASQNDILHFE 129
           SF  +P W+ E K+H+  +     LVG K DL  +  VP ++    A+ FA  +    FE
Sbjct: 117 SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL----AQKFADTHSXPLFE 172
Query: 130 TSSRS 134
           TS+++
Sbjct: 173 TSAKN 177

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+  +F
Sbjct: 33  ESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTF 91
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                W+ E +R   P+  V AL G K DL      R V   EA+A+A  N +L  ETS+
Sbjct: 92  ARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVEFQEAQAYADDNSLLFMETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V   F A+ +++
Sbjct: 148 KTAMNVNEIFMAIAKKL 164

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 33  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 92  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 33  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 92  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 34  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 92
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 93  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 148
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 149 TSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 33  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 92  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 33  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 92  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 33  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 92  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF  + V + +G ++KLQLWDTAGQERFR+IT +YYR ++G +LVYD+T   +F +
Sbjct: 52  TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 110
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W      H      +  LVG K D+      R V+  + +A A +  I   E+S+++
Sbjct: 111 IKQWFKTVNEHANDEAQLL-LVGNKSDM----ETRVVTADQGEALAKELGIPFIESSAKN 165
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
              V   F  + + I  ++ S
Sbjct: 166 DDNVNEIFFTLAKLIQEKIDS 186

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 33  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 92  ESFARAKNWVKELQRQASPN-IVIALSGNKADLANK---RAVDFQEAQSYADDNSLLFME 147
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 148 TSAKTSMNVNEIFMAIAKKL 167

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + +G  ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+R SFE+
Sbjct: 33  TIGIDFLSKTLYLDEGP-VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFEN 91
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ +          + ALVG K DL   G  R+V+  E    A + +    ETS+++
Sbjct: 92  TTKWIQDILNE-RGKDVIIALVGNKTDL---GDLRKVTYEEGXQKAQEYNTXFHETSAKA 147
Query: 135 GFQVENAF 142
           G  ++  F
Sbjct: 148 GHNIKVLF 155

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+ 
Sbjct: 34  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNE 92
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 93  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFXE 148
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 149 TSAKTSXNVNEIFXAIAKKL 168

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF  + V + +G ++KLQLWDTAGQERFR+IT +YYR ++G +LVYD+T   +F +
Sbjct: 39  TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 97
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W      H      +  LVG K D+      R V+  + +A A +  I   E+S+++
Sbjct: 98  IKQWFKTVNEHANDEAQLL-LVGNKSDM----ETRVVTADQGEALAKELGIPFIESSAKN 152
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
              V   F  + + I  ++ S
Sbjct: 153 DDNVNEIFFTLAKLIQEKIDS 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF  + V + +G ++KLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT   +F +
Sbjct: 35  TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 93
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W      H      +  LVG K D+      R V+  + +A A +  I   E+S+++
Sbjct: 94  IKQWFKTVNEHANDEAQLL-LVGNKSDM----ETRVVTADQGEALAKELGIPFIESSAKN 148
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
              V   F  + + I  ++ S
Sbjct: 149 DDNVNEIFFTLAKLIQEKIDS 169

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 5/131 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + D   I+LQLWDTAGQERFRS+  SY R+S  A++VYDIT+  SF+ 
Sbjct: 38  TIGIDFLSKTMYLEDRT-IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ 96
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ + +        +  LVG K DL      R+VS  E +  A + +++  ETS+++
Sbjct: 97  TTKWIDDVRTE-RGSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 135 GFQVENAFTAV 145
           G+ V+  F  V
Sbjct: 153 GYNVKQLFRRV 163

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%)
Query: 2   VTLLYLYIQIS-DP----TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFR 47
            T LY Y     +P    TVG+DF  + V       DGA     ++ LQLWDTAG ERFR
Sbjct: 25  TTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFR 84
Query: 48  SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107
           S+T +++R++ G LL +D+TS+ SF ++  W  + + +     P   L+G K DL     
Sbjct: 85  SLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ-- 142
Query: 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            REV+E +A+  A +  I +FETS+ +G  VE +   +   I  R +
Sbjct: 143 -REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 17/167 (10%)
Query: 2   VTLLYLYIQIS-DP----TVGVDFFARLVTMR----DGA-----RIKLQLWDTAGQERFR 47
            T LY Y     +P    TVG+DF  + V       DGA     ++ LQLWDTAG ERFR
Sbjct: 25  TTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFR 84
Query: 48  SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV 107
           S+T +++R++ G LL +D+TS+ SF ++  W  + + +     P   L+G K DL     
Sbjct: 85  SLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQ-- 142
Query: 108 PREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            REV+E +A+  A +  I +FETS+ +G  VE +   +   I  R +
Sbjct: 143 -REVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G+DF ++ + + D   ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+  SF+
Sbjct: 32  ATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 90
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
               W+ + +        +  LVG K DL      R+VS  E +  A + +++  ETS++
Sbjct: 91  QTTKWIDDVRTE-RGSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAK 146
Query: 134 SGFQVENAFTAV 145
           +G+ V+  F  V
Sbjct: 147 AGYNVKQLFRRV 158

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF  + V + +G ++KLQLWDTAGQERFR+IT +YYR + G +LVYD+T   +F +
Sbjct: 35  TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTN 93
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W      H      +  LVG K D       R V+  + +A A +  I   E+S+++
Sbjct: 94  IKQWFKTVNEHANDEAQLL-LVGNKSDX----ETRVVTADQGEALAKELGIPFIESSAKN 148
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
              V   F  + + I  ++ S
Sbjct: 149 DDNVNEIFFTLAKLIQEKIDS 169

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + D   ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+  SF  
Sbjct: 46  TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQ 104
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ +  R       +  LVG K DL      R+VS  E +  A + +++  ETS+++
Sbjct: 105 TSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 160
Query: 135 GFQVENAFTAV 145
           G+ V+  F  V
Sbjct: 161 GYNVKQLFRRV 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF  + V + +G ++KLQ+WDTAGQERFR+IT +YYR + G +LVYDIT   +F +
Sbjct: 35  TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTN 93
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           I  W      H      +  LVG K D       R V+  + +A A +  I   E+S+++
Sbjct: 94  IKQWFKTVNEHANDEAQLL-LVGNKSDX----ETRVVTADQGEALAKELGIPFIESSAKN 148
Query: 135 GFQVENAFTAVTQEIYNRVQS 155
              V   F  + + I  ++ S
Sbjct: 149 DDNVNEIFFTLAKLIQEKIDS 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           + T+   F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT+  +F
Sbjct: 35  ESTIQAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTF 93
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                W+ E +R   P+  V AL G K DL      R V   EA+A+A  N +L  ETS+
Sbjct: 94  ARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVEFQEAQAYADDNSLLFMETSA 149
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V   F A+ +++
Sbjct: 150 KTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           + T+G  F  + V + D   +K ++WDTAG ER+ S+   YYR +  A++VYDIT+  +F
Sbjct: 35  ESTIGAAFLTQTVCL-DDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTF 93
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                W+ E +R   P+  V AL G K DL      R V   EA+A+A  N +L  ETS+
Sbjct: 94  ARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVEFQEAQAYADDNSLLFMETSA 149
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V   F A+ +++
Sbjct: 150 KTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 10  QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR 69
           +  + T+G  F  + V + D   +K ++WDTAG ER+ S+   YYR +  A++VYDIT+ 
Sbjct: 32  EFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNE 90
Query: 70  ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
            SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L  E
Sbjct: 91  ESFARAKNWVKELQRQASPN-IVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFME 146
Query: 130 TSSRSGFQVENAFTAVTQEI 149
           TS+++   V   F A+ +++
Sbjct: 147 TSAKTSMNVNEIFMAIAKKL 166

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + D   I+LQLWDTAG ERFRS+  SY R+S  A++VYDIT+  SF+ 
Sbjct: 45  TIGIDFLSKTMYLEDRT-IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ 103
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ +  R       +  LVG K DL      R+VS  E +  A + +++  ETS+++
Sbjct: 104 TTKWIDDV-RTERGSDVIIMLVGNKTDLADK---RQVSIEEGERKAKELNVMFIETSAKA 159
Query: 135 GFQVENAFTAVTQEIYNRVQSGDYKVED 162
           G+ V+  F  V   +     + D   ED
Sbjct: 160 GYNVKQLFRRVAAALPGMESTQDRSRED 187

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G+DF ++ + + D   ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+  SF+
Sbjct: 33  ATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQ 91
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
               W+ + +        +  LVG K DL      R+++  E +  A +  ++  ETS++
Sbjct: 92  QTSKWIDDVRTE-RGSDVIIMLVGNKTDLAD---KRQITIEEGEQRAKELSVMFIETSAK 147
Query: 134 SGFQVENAFTAV 145
           +G+ V+  F  V
Sbjct: 148 TGYNVKQLFRRV 159

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           +PT+G  F  + V  ++    K  +WDTAGQERFR++   YYR S  A++VYDIT   +F
Sbjct: 35  NPTIGASFMTKTVQYQNELH-KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETF 93
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
             +  W+ E ++H  P   V A+ G K DL      REV E +AK +A     +  ETS+
Sbjct: 94  STLKNWVRELRQH-GPPSIVVAIAGNKCDLTDV---REVMERDAKDYADSIHAIFVETSA 149
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   +   F  +++ I
Sbjct: 150 KNAININELFIEISRRI 166

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F  + V   +    K  +WDTAGQERF S+   YYR S  A++VYDIT + SF 
Sbjct: 54  PTIGASFMTKTVPCGNELH-KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFY 112
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            +  W+ E K H  P   V A+ G K DL      REV   +AK +A     +  ETS++
Sbjct: 113 TLKKWVKELKEH-GPENIVMAIAGNKCDLSDI---REVPLKDAKEYAESIGAIVVETSAK 168
Query: 134 SGFQVENAFTAVTQEI 149
           +   +E  F  ++++I
Sbjct: 169 NAINIEELFQGISRQI 184

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + SF 
Sbjct: 29  STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 87
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++  W+ E  R+   +     LVG K DL
Sbjct: 88  NVKQWLQEIDRYASENVNKL-LVGNKCDL 115

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + D   ++LQLWDTAG ERFRS+  SY R+S  A++VYDIT+  SF+ 
Sbjct: 48  TIGIDFLSKTMYLEDRT-VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ 106
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ +  R       +  LVG K DL      R+VS  E +  A + +++  ETS+++
Sbjct: 107 TTKWIDDV-RTERGSDVIIMLVGNKTDLADK---RQVSIEEGERKAKELNVMFIETSAKA 162
Query: 135 GFQVENAFTAVTQEIYNRVQSGDYKVED 162
           G+ V+  F  V   +     + D   ED
Sbjct: 163 GYNVKQLFRRVAAALPGMESTQDRSRED 190

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DF ++ + + D   ++LQLWDTAG ERFRS+  SY R+S  A++VYDIT+  SF+ 
Sbjct: 38  TIGIDFLSKTMYLEDRT-VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ 96
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
              W+ +  R       +  LVG K DL      R+VS  E +  A + +++  ETS+++
Sbjct: 97  TTKWIDDV-RTERGSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 135 GFQVENAFTAVTQEIYNRVQSGDYKVED 162
           G+ V+  F  V   +     + D   ED
Sbjct: 153 GYNVKQLFRRVAAALPGMESTQDRSRED 180

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 8/153 (5%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARI-KLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           Y Q    T+G DF  + VT+ DG ++  +Q+WDTAGQERF+S+  ++YR +   +LVYD+
Sbjct: 33  YSQQYKATIGADFLTKEVTV-DGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDV 91
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQ 122
           T+ +SFE+I  W  E   H   + P    F ++G K+D  +S   + VSE  A+  A S 
Sbjct: 92  TNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVSEKSAQELAKSL 149
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
            DI  F TS+++   V+ AF  + +    + Q+
Sbjct: 150 GDIPLFLTSAKNAINVDTAFEEIARSALQQNQA 182

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            TVG+DF  + +  R+  RIKLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT+  SF 
Sbjct: 36  STVGIDFKVKTI-YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 94
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            +  W  + K +   +  V  LVG K D+      R VS    +  A       FE S++
Sbjct: 95  AVQDWSTQIKTYSWDNAQVL-LVGNKCDMED---ERVVSSERGRQLADHLGFEFFEASAK 150
Query: 134 SGFQVENAF 142
               V+  F
Sbjct: 151 DNINVKQTF 159

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            TVG+DF  + V  R   R+KLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT+  SF 
Sbjct: 54  STVGIDFKVKTV-YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 112
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            +  W  + K +   +  V  LVG K D+ +    R V   + +  A Q     FE S++
Sbjct: 113 AVQDWATQIKTYSWDNAQVI-LVGNKCDMEE---ERVVPTEKGQLLAEQLGFDFFEASAK 168
Query: 134 SGFQVENAFTAVTQEIYNRV 153
               V  AF  +   I +++
Sbjct: 169 ENISVRQAFERLVDAICDKM 188

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+G  F  + + +  G R+ L +WDTAGQERF ++   YYR+S GA+LVYDIT   SF+
Sbjct: 37  TTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            +  W+ E ++ +  +     +VG K+DL +    R VS  EA+++A      H+ TS++
Sbjct: 96  KVKNWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAK 151
Query: 134 SGFQVENAF 142
               +E  F
Sbjct: 152 QNKGIEELF 160

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           +PT+G  F  + V  ++    K  +WDTAG ERFR++   YYR S  A++VYDIT   +F
Sbjct: 36  NPTIGASFMTKTVQYQNELH-KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF 94
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
             +  W+ E ++H  P   V A+ G K DL      REV E +AK +A     +  ETS+
Sbjct: 95  STLKNWVRELRQH-GPPSIVVAIAGNKCDLTDV---REVMERDAKDYADSIHAIFVETSA 150
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   +   F  +++ I
Sbjct: 151 KNAININELFIEISRRI 167

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GVDF  + + + DG R  LQLWDTAGQERFRSI KSY+R + G LL+YD+T   SF +
Sbjct: 60  TLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118
Query: 75  IPVW--MMEAKRHIEPHRPVFALVGCKLDLL-------QSGVPREVSEAEAKAFASQNDI 125
           I  W  M+E   H     P+  LVG K D+        Q  VP    E  A  + +    
Sbjct: 119 IREWVDMIEDAAH--ETVPIM-LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA---- 171
Query: 126 LHFETSSRSGFQVENAFTAVTQEIYNR 152
           L  ETS++ G  +  A   + +E+  R
Sbjct: 172 LFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 9/137 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G DF  + V M D   + +Q+WDTAGQERF+S+  ++YR +   +LV+D+T+  +F+ 
Sbjct: 40  TIGADFLTKEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75  IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
           +  W  E      P  P    F ++G K+DL      R+V+   A+A+  S+N+I +FET
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ 147
           S++    VE AF  + +
Sbjct: 155 SAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 9/137 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G DF  + V M D   + +Q+WDTAGQERF+S+  ++YR +   +LV+D+T+  +F+ 
Sbjct: 40  TIGADFLTKEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75  IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
           +  W  E      P  P    F ++G K+DL      R+V+   A+A+  S+N+I +FET
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ 147
           S++    VE AF  + +
Sbjct: 155 SAKEAINVEQAFQTIAR 171

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           TVG+DF  + V   D  RIKLQ+WDTAGQER+R+IT +YYR ++G LL+YDI ++ SF  
Sbjct: 54  TVGIDFKVKTVYRHD-KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAA 112
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W  + K +   +  V  LVG K DL      R V   + +  A       FE S++ 
Sbjct: 113 VQDWATQIKTYSWDNAQVI-LVGNKCDLEDE---RVVPAEDGRRLADDLGFEFFEASAKE 168
Query: 135 GFQVENAF 142
              V+  F
Sbjct: 169 NINVKQVF 176

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G DF  + V M D   + +Q+WDTAGQERF+S+  ++YR +   +LV+D+T+  +F+ 
Sbjct: 40  TIGADFLTKEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75  IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
           +  W  E      P  P    F ++G K+D       R+V+   A+A+  S+N+I +FET
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDFEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ 147
           S++    VE AF  + +
Sbjct: 155 SAKEAINVEQAFQTIAR 171

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+   F  + + +  G R+ L +WDTAGQERF ++   YYR+S GA+LVYDIT   SF+
Sbjct: 37  TTLQASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            +  W+ E ++ +  +     +VG K+DL +    R VS  EA+++A      H+ TS++
Sbjct: 96  KVKNWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAK 151
Query: 134 SGFQVENAF 142
               +E  F
Sbjct: 152 QNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+   F  + + +  G R+ L +WDTAGQERF ++   YYR+S GA+LVYDIT   SF+ 
Sbjct: 52  TLQASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQK 110
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W+ E ++ +  +     +VG K+DL +    R VS  EA+++A      H+ TS++ 
Sbjct: 111 VKNWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAKQ 166
Query: 135 GFQVENAF 142
              +E  F
Sbjct: 167 NKGIEELF 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 18/150 (12%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G DF  + V M D   + +Q+WDTAG ERF+S+  ++YR +   +LV+D+T+  +F+ 
Sbjct: 40  TIGADFLTKEV-MVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98
Query: 75  IPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILHFET 130
           +  W  E      P  P    F ++G K+DL      R+V+   A+A+  S+N+I +FET
Sbjct: 99  LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFET 154
Query: 131 SSRSGFQVENAFTAVTQ---------EIYN 151
           S++    VE AF  + +         E+YN
Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELYN 184

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           TVG+DF  + +  R+  RIKLQ+WDTAG ER+R+IT +YYR + G +L YDIT+  SF  
Sbjct: 40  TVGIDFKVKTI-YRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNA 98
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +  W  + K +   +  V  LVG K D       R VS    +  A       FE S++ 
Sbjct: 99  VQDWSTQIKTYSWDNAQVL-LVGNKCDXEDE---RVVSSERGRQLADHLGFEFFEASAKD 154
Query: 135 GFQVENAF 142
              V+  F
Sbjct: 155 NINVKQTF 162

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  + + + DG  + +Q+WDTAGQERFRS+   +YR S   LL + +    SF++
Sbjct: 39  TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 97
Query: 75  IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
           +  W  E   +    EP    F ++G K+D+ +    R+VS  EA+A+   N D  +FET
Sbjct: 98  LSNWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFET 153
Query: 131 SSRSGFQVENAFTAVTQEI 149
           S++    V  AF    + +
Sbjct: 154 SAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  + + + DG  + +Q+WDTAGQERFRS+   +YR S   LL + +    SF++
Sbjct: 41  TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 99
Query: 75  IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
           +  W  E   +    EP    F ++G K+D+ +    R+VS  EA+A+   N D  +FET
Sbjct: 100 LSNWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFET 155
Query: 131 SSRSGFQVENAFTAVTQEI 149
           S++    V  AF    + +
Sbjct: 156 SAKDATNVAAAFEEAVRRV 174

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  + + + DG  + +Q+WDTAGQERFRS+   +YR S   LL + +    SF++
Sbjct: 43  TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 101
Query: 75  IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
           +  W  E   +    EP    F ++G K D+ +    R+VS  EA+A+   N D  +FET
Sbjct: 102 LSNWKKEFIYYADVKEPESFPFVILGNKTDIKE----RQVSTEEAQAWCKDNGDYPYFET 157
Query: 131 SSRSGFQVENAFTAVTQEI 149
           S++    V  AF    + I
Sbjct: 158 SAKDSTNVAAAFEEAVRRI 176

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            T+GVDF  R + + D   ++L LWDTAGQE F +ITK+YYR +   +LV+  T R SFE
Sbjct: 36  KTIGVDFLERQIQVND-EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
            I  W    K   E      ALV  K+DLL       +   EA+  A +  +  + TS +
Sbjct: 95  AISSW--REKVVAEVGDIPTALVQNKIDLLDDSC---IKNEEAEGLAKRLKLRFYRTSVK 149
Query: 134 SGFQVENAFTAVTQE 148
               V   F  + ++
Sbjct: 150 EDLNVSEVFKYLAEK 164

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+F  R + + DG  + LQ+WDTAGQERF+S+   +YR +   LL + +  R SFE+
Sbjct: 39  TIGVEFLNRDLEV-DGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN 97
Query: 75  IPVWMMEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFET 130
           +  W  E   +    +P    F ++G K+D       R+V+  EA+ +  +N D  + ET
Sbjct: 98  LGNWQKEFIYYADVKDPEHFPFVVLGNKVD----KEDRQVTTEEAQTWCMENGDYPYLET 153
Query: 131 SSRSGFQVENAFTAVTQEI 149
           S++    V  AF    +++
Sbjct: 154 SAKDDTNVTVAFEEAVRQV 172

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 31  ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR 90
             IK  +WDTAGQER+ SI   YYR +  A++V+DI++  + +    W+ + K       
Sbjct: 91  CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI---SSN 147
Query: 91  PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
            +  LV  K+D        +V   E + +A  N++L  +TS+++G  ++N F  + +EIY
Sbjct: 148 YIIILVANKID----KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
Query: 151 NRV 153
             +
Sbjct: 204 KNI 206

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+G+DFF R +T+     + LQ+WD  GQ     +   Y   + G LLVYDIT+  SFE+
Sbjct: 38  TIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97
Query: 75  IPVWMMEAKRHIEPH--RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           +  W    K+  E    +P+ ALVG K+DL      R +   +   F  +N       S+
Sbjct: 98  LEDWYTVVKKVSEESETQPLVALVGNKIDLEHM---RTIKPEKHLRFCQENGFSSHFVSA 154
Query: 133 RSGFQVENAFTAVTQEI 149
           ++G  V   F  V  EI
Sbjct: 155 KTGDSVFLCFQKVAAEI 171

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR +++
Sbjct: 41  PTLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 99
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++
Sbjct: 100 NVPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAK 152
Query: 134 SGFQVENAFTAVTQEI 149
           S +  E  F  + +++
Sbjct: 153 SNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR +++
Sbjct: 41  PTLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 99
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           ++P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++
Sbjct: 100 NVPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAK 152
Query: 134 SGFQVENAFTAVTQEI 149
           S +  E  F  + +++
Sbjct: 153 SNYNFEKPFLWLARKL 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAGQE + +I  +Y+R+  
Sbjct: 30  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87
Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           G L V+ IT   SF     +  +  R  E     F LVG K DL      R+VS  EAK 
Sbjct: 88  GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 144
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A Q ++ + ETS+++   V+  F  + +EI  R
Sbjct: 145 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAGQE + +I  +Y+R+  
Sbjct: 34  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91
Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           G L V+ IT   SF     +  +  R  E     F LVG K DL      R+VS  EAK 
Sbjct: 92  GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 148
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A Q ++ + ETS+++   V+  F  + +EI  R
Sbjct: 149 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAGQE + +I  +Y+R+  
Sbjct: 22  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 79
Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           G L V+ IT   SF     +  +  R  E     F LVG K DL      R+VS  EAK 
Sbjct: 80  GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 136
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A Q ++ + ETS+++   V+  F  + +EI  R
Sbjct: 137 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAGQE + +I  +Y+R+  
Sbjct: 20  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77
Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           G L V+ IT   SF     +  +  R  E     F LVG K DL      R+VS  EAK 
Sbjct: 78  GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 134
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A Q ++ + ETS+++   V+  F  + +EI  R
Sbjct: 135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 35  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 93
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 94  VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 146
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 147 NYNFEKPFLWLARKL 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 47  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 106 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 158
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 159 NYNFEKPFLWLARKL 173

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR ++++
Sbjct: 47  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 106 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 158
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 159 NYNFEKPFLWLARKL 173

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE+F  +   YY  +  A++ +D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAGQE++  +   YY  +  A++++D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    L    +   IK  +WDTAG E+F  +   YY N+  A++++D+TSR ++++
Sbjct: 44  TIGVEVHP-LSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 102
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+ +  V     +A+   F  + ++ +++ S++S
Sbjct: 103 VPNWHRDLVRVCE-NIPI-VLCGNKVDVKERKV-----KAKTITFHRKKNLQYYDISAKS 155
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
            +  E  F  + +++    Q
Sbjct: 156 NYNFEKPFLWLARKLAGNPQ 175

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +++  DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I 
Sbjct: 28  FVEKYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85
Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SFE I  +  + KR  +       LVG K DL      R V   +A+  A    I +
Sbjct: 86  NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPY 141
Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS+++   VE+AF  + +EI
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    L    +   IK  +WDTAG E+F  +   YY N+  A++++D+TSR ++++
Sbjct: 36  TIGVEVHP-LSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 94
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+ +  V     +A+   F  + ++ +++ S++S
Sbjct: 95  VPNWHRDLVRVCE-NIPI-VLCGNKVDVKERKV-----KAKTITFHRKKNLQYYDISAKS 147
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
            +  E  F  + +++    Q
Sbjct: 148 NYNFEKPFLWLARKLAGNPQ 167

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    L    +   IK  +WDTAG E+F  +   YY N+  A++++D+TSR ++++
Sbjct: 37  TIGVEVHP-LSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 95
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+ +  V     +A+   F  + ++ +++ S++S
Sbjct: 96  VPNWHRDLVRVCE-NIPI-VLCGNKVDVKERKV-----KAKTITFHRKKNLQYYDISAKS 148
Query: 135 GFQVENAFTAVTQEIYNRVQ 154
            +  E  F  + +++    Q
Sbjct: 149 NYNFEKPFLWLARKLAGNPQ 168

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAG E + +I  +Y+R+  
Sbjct: 22  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLEDYAAIRDNYFRSGE 79
Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           G L V+ IT   SF     +  +  R  E     F LVG K DL      R+VS  EAK 
Sbjct: 80  GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKN 136
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A Q ++ + ETS+++   V+  F  + +EI  R
Sbjct: 137 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 40  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 97
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 98  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 153
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 154 KTRQGVEDAFYTLVREI 170

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  D + ++ ++ DG   +L + DTAGQE F ++ + Y R   G LLV+ I  R SF
Sbjct: 39  DPTIE-DSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
             +     +  R  +       LVG K DL      R+V  +EA AF + + + +FE S+
Sbjct: 97  NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ---RQVPRSEASAFGASHHVAYFEASA 153
Query: 133 RSGFQVENAFTAVTQEI 149
           +    V+ AF  + + +
Sbjct: 154 KLRLNVDEAFEQLVRAV 170

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEESYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 38  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 96  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 151
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 152 KTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 38  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 96  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 151
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 152 KTRQGVEDAFYTLVREI 168

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAG E+F  +   YY  +  A++++D+TSR ++++
Sbjct: 38  TLGVEVHP-LVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 96
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 97  VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 149
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 150 NYNFEKPFLWLARKL 164

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AGRTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAG E+F  +   YY  +  A++++D+TSR ++++
Sbjct: 44  TLGVEVHP-LVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 102
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 103 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 155
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 156 NYNFEKPFLWLARKL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 15  TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH 74
           T+GV+    LV   +   IK  +WDTAG E+F  +   YY  +  A++++D+TSR ++++
Sbjct: 42  TLGVEVHP-LVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 75  IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
           +P W  +  R  E + P+  L G K+D+    V     +A++  F  + ++ +++ S++S
Sbjct: 101 VPNWHRDLVRVCE-NIPI-VLCGNKVDIKDRKV-----KAKSIVFHRKKNLQYYDISAKS 153
Query: 135 GFQVENAFTAVTQEI 149
            +  E  F  + +++
Sbjct: 154 NYNFEKPFLWLARKL 168

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           ++   DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I 
Sbjct: 28  FVDECDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85
Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SFE I  +  + KR  +       LVG K DL      R V   +A+  A    I +
Sbjct: 86  NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL----AARTVESRQAQDLARSYGIPY 141
Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS+++   VE+AF  + +EI
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG + DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNRCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  D + +   + D A  +L + DTAGQE F ++ + Y R   G LLV+ +T R SF
Sbjct: 35  DPTIE-DSYTKQCVIDDRA-ARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSF 92
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  +  R  +       L+G K DL      R+V++ E +  A Q  + + E S+
Sbjct: 93  EEIYKFQRQILRVKDRDEFPMILIGNKADL---DHQRQVTQEEGQQLARQLKVTYMEASA 149
Query: 133 RSGFQVENAF 142
           +    V+ AF
Sbjct: 150 KIRMNVDQAF 159

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DP++   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 39  DPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 96
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 97  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 152
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 153 KTRQGVEDAFYTLVREI 169

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DT GQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DP++   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DT GQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG+E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQE 148
           ++   VE+AF  + +E
Sbjct: 147 KTRQGVEDAFYTLVRE 162

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE   ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F A +V   DG+ + L LWDTAGQE +  +    YR +   LL + + S+AS+E
Sbjct: 37  PTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 94
Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
           +I   W+ E K H  P  P+  LVG KLDL
Sbjct: 95  NIHKKWLPELK-HYAPGIPI-VLVGTKLDL 122

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 51  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF 108
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
             I ++  + KR  +       LVG K DL      R V   +A   A    I   ETS+
Sbjct: 109 ADINLYREQIKRVKDSDDVPMVLVGNKCDL----PTRTVDTKQAHELAKSYGIPFIETSA 164
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 165 KTRQGVEDAFYTLVREI 181

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTA QE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKXDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTA QE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKXDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 38  DPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSF 95
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 96  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 151
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 152 KTRQGVEDAFYTLVREI 168

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 34  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I   ETS+
Sbjct: 92  EDIHHYREQIKRVKDSEDVPMVLVGNKCDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V++AF  + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F A +V   DG  + L LWDTAGQE +  +    YR +   +L + + S+AS+E
Sbjct: 37  PTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 94
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ---------SGVPREVSEAE--AKAFASQ 122
           ++    +   RH  P  P+  LVG KLDL             VP   ++ E   K   S 
Sbjct: 95  NVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSP 153
Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
              ++ E SS++   V+  F A  + +
Sbjct: 154 ---IYIECSSKTQQNVKAVFDAAIKVV 177

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSYRKQVVI--DGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKCDL----AARTVESRQAQDLARSYGIPYIETSA 146
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 34  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I   ETS+
Sbjct: 92  EDIHHYREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V++AF  + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 34  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I   ETS+
Sbjct: 92  EDIHHYREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V++AF  + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 34  DPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I   ETS+
Sbjct: 92  EDIHHYREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDLARSYGIPFIETSA 147
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V++AF  + +EI
Sbjct: 148 KTRQGVDDAFYTLVREI 164

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F A +V   +GA + L LWDTAGQE +  +    YR +   +L + + S+AS+E
Sbjct: 39  PTVFDNFSANVVV--NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++    +   +H  P  P+  LVG KLDL
Sbjct: 97  NVSKKWIPELKHYAPGVPI-VLVGTKLDL 124

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           +++   DPT+   +     T  D     L + DTAGQE F ++ + Y R   G L+VY +
Sbjct: 42  IFVDDYDPTIEDSYLKH--TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T +ASFEH+  +     R  +       LV  K+DL+     R+V+  + K  A++ +I 
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 156
Query: 127 HFETSSR 133
           + ETS++
Sbjct: 157 YIETSAK 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           +++   DPT+   +  R  T  D     L + DTAGQE F ++ + Y R   G L+VY +
Sbjct: 42  IFVDEYDPTIEDSY--RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T +ASFEH+  +     R  +       LV  K+DL+     R+V+  + K  A++ +I 
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 156
Query: 127 HFETSSR 133
           + ETS++
Sbjct: 157 YIETSAK 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  ++V   DG    L + DTAG E + ++   Y R   G L V+ I +  SF
Sbjct: 51  DPTIEDSYRKQVVI--DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSF 108
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I   ETS+
Sbjct: 109 EDIHHYREQIKRVKDSEDVPMVLVGNKCDL----PSRTVDTKQAQDLARSYGIPFIETSA 164
Query: 133 RSGFQVENAFTAVTQEI 149
           ++   V++AF  + +EI
Sbjct: 165 KTRQGVDDAFYTLVREI 181

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           +++   DPT+   +     T  D     L + DTAGQE F ++ + Y R   G L+VY +
Sbjct: 37  IFVPDYDPTIEDSYLKH--TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 94
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T +ASFEH+  +     R  +       LV  K+DL+     R+V+  + K  A++ +I 
Sbjct: 95  TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 151
Query: 127 HFETSSR 133
           + ETS++
Sbjct: 152 YIETSAK 158

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           +++   DPT+   +     T  D     L + DTAGQE F ++ + Y R   G L+VY +
Sbjct: 42  IFVPEYDPTIEDSYLKH--TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T +ASFEH+  +     R  +       LV  K+DL+     R+V+  + K  A++ +I 
Sbjct: 100 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIP 156
Query: 127 HFETSSR 133
           + ETS++
Sbjct: 157 YIETSAK 163

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG R++L LWDTAGQE +  +    Y +S   L+ + I    S E
Sbjct: 41  PTVFENYVADVEV--DGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLE 98
Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
           ++   W+ E   H     P+  LVGCK+DL         L+    + V+  E ++ A Q 
Sbjct: 99  NVQEKWIAEV-LHFCQGVPII-LVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQI 156
Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
               ++E S+++G+ V   F A T+
Sbjct: 157 GATGYYECSAKTGYGVREVFEAATR 181

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 35  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 92
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  PH P+  LVG KLDL
Sbjct: 93  NVRAKWYPEVRHHC-PHTPIL-LVGTKLDL 120

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  PH P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PHTPIL-LVGTKLDL 119

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 35  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 92
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  PH P+  LVG KLDL
Sbjct: 93  NVRAKWYPEVRHHC-PHTPIL-LVGTKLDL 120

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAG E + +I  +Y+R+  
Sbjct: 23  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLEDYAAIRDNYFRSGE 80
Query: 59  GALLVYDITSRASFEHIPVWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK 117
           G LLV+ IT   SF     +  +  R   E  +    +VG K DL +    R+V   EA+
Sbjct: 81  GFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER---RQVPVEEAR 137
Query: 118 AFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
           + A +  + + ETS+++   V+  F  + +EI  +  S
Sbjct: 138 SKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 175

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Query: 2   VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +TL ++Y   ++  +PT    +  ++V   DG  +++ + DTAG E + +I  +Y+R+  
Sbjct: 19  LTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLEDYAAIRDNYFRSGE 76
Query: 59  GALLVYDITSRASFEHIPVWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK 117
           G LLV+ IT   SF     +  +  R   E  +    +VG K DL +    R+V   EA+
Sbjct: 77  GFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER---RQVPVEEAR 133
Query: 118 AFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
           + A +  + + ETS+++   V+  F  + +EI  +  S
Sbjct: 134 SKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 171

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +  +L+ + + S ASFE
Sbjct: 36  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 93
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 94  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 121

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +  +L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +  +L+ + + S ASFE
Sbjct: 38  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 95
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 96  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 123

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F A +    DG  + L LWDTAGQE +  +    YR +   +L + + S+AS+E
Sbjct: 40  PTVFDNFSANVAV--DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYE 97
Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   WM E +R   P+ P+  LVG KLDL
Sbjct: 98  NVLKKWMPELRR-FAPNVPI-VLVGTKLDL 125

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +  +L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 41  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 98
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 99  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 126

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 56  PTVFENYIADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ 104
           +IP  W  E K H  P+ P+  LVG K DL Q
Sbjct: 114 NIPEKWTPEVK-HFXPNVPII-LVGNKKDLRQ 143

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           ++  +DPT+  + F +L+T+ +G    LQL DTAGQ+ +    ++Y  +  G +LVY +T
Sbjct: 29  FVDSADPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVT 86
Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           S  SFE I V   +    +   +    LVG K DL    + R +S  E KA A   +   
Sbjct: 87  SIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAF 143
Query: 128 FETSSR 133
            E+S++
Sbjct: 144 LESSAK 149

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 53  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 110
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 111 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 138

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 44  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 101
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 102 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 129

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 61  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 146

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 61  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 146

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 13  DPTVGVDFFARLVTM-RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
           DPTV  + ++++VT+ +D     L L DTAGQ+ +  +  S+     G +LVY +TS  S
Sbjct: 54  DPTVE-NTYSKIVTLGKD--EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS 110
Query: 72  FEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           F+ I  ++    + H +   PV  LVG K DL      REV   E K  A        E+
Sbjct: 111 FQVIESLYQKLHEGHGKTRVPV-VLVGNKADL---SPEREVQAVEGKKLAESWGATFMES 166
Query: 131 SSRSGFQVENAFTAVTQEI 149
           S+R     +  FT V QEI
Sbjct: 167 SARENQLTQGIFTKVIQEI 185

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  + F +L+T+ +G    LQL DTAGQ+ +    ++Y  +  G +LVY +TS  SF
Sbjct: 31  DPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 88
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I V   +    +   +    LVG K DL    + R +S  E KA A   +    E+S+
Sbjct: 89  EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAFLESSA 145
Query: 133 RSGFQVENAFTAVTQE 148
           +      + F  +  E
Sbjct: 146 KENQTAVDVFRRIILE 161

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 36  PTVFENYIADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ-SGVPREVSEAEAKAFASQ------NDI 125
           +IP  W  E K H  P+ P+  LVG K DL Q     RE+++ + +   S+      N I
Sbjct: 94  NIPEKWTPEVK-HFCPNVPII-LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 151
Query: 126 LHF---ETSSRSGFQVENAFTAVTQ 147
             F   E S+++   V   F   T+
Sbjct: 152 SAFGYLECSAKTKEGVREVFEMATR 176

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  + F +L+T+ +G    LQL DTAGQ+ +    ++Y  +  G +LVY +TS  SF
Sbjct: 36  DPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I V   +    +   +    LVG K DL    + R +S  E KA A   +    E+S+
Sbjct: 94  EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAFLESSA 150
Query: 133 RSGFQVENAFTAVTQE 148
           +      + F  +  E
Sbjct: 151 KENQTAVDVFRRIILE 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  + F +L+T+ +G    LQL DTAGQ+ +    ++Y  +  G +LVY +TS  SF
Sbjct: 36  DPTIE-NTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93
Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I V   +    +   +    LVG K DL    + R +S  E KA A   +    E+S+
Sbjct: 94  EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL---HMERVISYEEGKALAESWNAAFLESSA 150
Query: 133 R 133
           +
Sbjct: 151 K 151

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 56  PTVFENYIADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQ 104
           +IP  W  E K H  P+ P+  LVG K DL Q
Sbjct: 114 NIPEKWTPEVK-HFCPNVPII-LVGNKKDLRQ 143

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           ++++  DPT+  D + + V + D  +  L++ DTAG E+F ++   Y +N  G  LVY I
Sbjct: 27  IFVEKYDPTIE-DSYRKQVEV-DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
           T++++F  +     +  R  +       LVG K DL      R V + + +  A Q N+ 
Sbjct: 85  TAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWNNC 141
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
              E+S++S   V   F  + ++I
Sbjct: 142 AFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           ++++  DPT+  D + + V + D  +  L++ DTAG E+F ++   Y +N  G  LVY I
Sbjct: 29  IFVEKYDPTIE-DSYRKQVEV-DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 86
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
           T++++F  +     +  R  +       LVG K DL      R V + + +  A Q N+ 
Sbjct: 87  TAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED---ERVVGKEQGQNLARQWNNC 143
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
              E+S++S   V   F  + ++I
Sbjct: 144 AFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 36  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 94  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 34  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 92  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 119

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 34  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 92  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 119

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 37  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 95  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 122

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 38  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 96  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 123

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 40  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 97
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 98  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 125

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 36  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 94  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 37  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 95  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 122

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 36  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 94  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++  PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I 
Sbjct: 33  FPEVYVPTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID 90
Query: 68  SRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           S  S E+IP  W  E K H  P+ P+  LVG K DL
Sbjct: 91  SPDSLENIPEKWTPEVK-HFCPNVPII-LVGNKKDL 124

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 36  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 94  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 38  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 96  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 123

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 38  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 96  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 123

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 24/109 (22%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---- 69
           PTV  ++ A +  M DG  + L LWDTAGQE +  +    Y  +VG     DITSR    
Sbjct: 36  PTVFDNYSANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDK 93
Query: 70  ---------------ASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
                          ASFE++   W  E + H  P+ P+  LVG KLDL
Sbjct: 94  PIADVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPII-LVGTKLDL 140

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASF 
Sbjct: 186 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           H+   W  E + H  P+ P+  LVG KLDL
Sbjct: 244 HVRAKWYPEVRHHC-PNTPII-LVGTKLDL 271

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASF 
Sbjct: 186 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           H+   W  E + H  P+ P+  LVG KLDL
Sbjct: 244 HVRAKWYPEVRHHC-PNTPII-LVGTKLDL 271

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +I+  DPT+  DF+ + + + D +   L++ DTAG E+F S+   Y +N  G +LVY + 
Sbjct: 28  FIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLV 85
Query: 68  SRASFEHI-PV--WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
           ++ SF+ I P+   ++  KR+     PV  LVG K+DL      REVS +E +A A +  
Sbjct: 86  NQQSFQDIKPMRDQIIRVKRY--EKVPVI-LVGNKVDLESE---REVSSSEGRALAEEWG 139
Query: 125 ILHFETSSRSGFQVENAFTAVTQEI 149
               ETS++S   V+  F  + +++
Sbjct: 140 CPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASF 
Sbjct: 186 PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           H+   W  E + H  P+ P+  LVG KLDL
Sbjct: 244 HVRAKWYPEVRHHC-PNTPII-LVGTKLDL 271

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  + F+ ++  ++   I L LWDTAGQE +  +    Y +S   LL + + +R SF+
Sbjct: 53  PTV-FENFSHVMKYKNEEFI-LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 110
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSG 106
           +I   W  E K +I+  + V  LVG K+DL + G
Sbjct: 111 NISTKWEPEIKHYIDTAKTV--LVGLKVDLRKDG 142

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +       Y ++   L+ + I S  S E
Sbjct: 36  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 94  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 121

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASFE
Sbjct: 37  PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 94
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 95  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 122

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASFE
Sbjct: 61  PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 146

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 35  LQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVF 93
           L LWDTAGQE +  +    Y +S   LL + + +R SF++I   W  E K +I+  + V 
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV- 131
Query: 94  ALVGCKLDLLQSG 106
            LVG K+DL + G
Sbjct: 132 -LVGLKVDLRKDG 143

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M DG  + L LWDTAG E +  +    Y  +   L+ + + S ASFE
Sbjct: 34  PTVFDNYSANV--MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P+ P+  LVG KLDL
Sbjct: 92  NVRAKWYPEVRHHC-PNTPII-LVGTKLDL 119

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M D   + L LWDTAGQE +  +    Y  +   L+ + + S AS+E
Sbjct: 40  PTVFDNYSANV--MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 97
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P  P+  LVG KLDL
Sbjct: 98  NVRAKWFPEVRHHC-PSTPII-LVGTKLDL 125

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M D   + L LWDTAGQE +  +    Y  +   L+ + + S AS+E
Sbjct: 41  PTVFDNYSANV--MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 98
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P  P+  LVG KLDL
Sbjct: 99  NVRAKWFPEVRHHC-PSTPII-LVGTKLDL 126

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +  M D   + L LWDTAGQE +  +    Y  +   L+ + + S AS+E
Sbjct: 34  PTVFDNYSANV--MVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE 91
Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W  E + H  P  P+  LVG KLDL
Sbjct: 92  NVRAKWFPEVRHHC-PSTPII-LVGTKLDL 119

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + + S  S E
Sbjct: 56  PTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W+ E K H  P+ P+  LV  K DL
Sbjct: 114 NIPEKWVPEVK-HFCPNVPII-LVANKKDL 141

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 19  DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-V 77
           D F+ +V++ DG  ++LQL DTAGQ+ F  +    Y N+   LL + + S +SF+++   
Sbjct: 55  DNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK 113
Query: 78  WMMEAKRHIEPHRPVFALVGCKLDL 102
           W+ E + H  P  P+  LVG + DL
Sbjct: 114 WVPEIRCHC-PKAPII-LVGTQSDL 136

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           ++++  DPT+  D + + V + D  +  L++ DTAG E+F ++   Y +N  G  LVY I
Sbjct: 27  IFVEKYDPTIE-DSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
           T++++F  +     +  R  +       LVG K DL      R V + + +  A Q  + 
Sbjct: 85  TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWCNC 141
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
              E+S++S   V   F  + ++I
Sbjct: 142 AFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 30  GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89
           G  IK  +WDTAGQE+   +   YY  + GA+L +D+TSR + +++  W+ E +  +   
Sbjct: 58  GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE 117
Query: 90  RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS 134
            P+  +   K+D+      +++S+          +  +FE S+++
Sbjct: 118 API-VVCANKIDIKNR---QKISKKLVMEVLKGKNYEYFEISAKT 158

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A +    DG +++L LWDTAG E +  +    Y ++   L+ + I S  S E
Sbjct: 39  PTVFENYVADIEV--DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           +IP  W  E K H  P+ P+  LVG K DL
Sbjct: 97  NIPEKWTPEVK-HFCPNVPII-LVGNKKDL 124

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 7   LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI 66
           +++   DPT+  D + + V + D  +  L++ DTAG E+F ++   Y +N  G  LVY I
Sbjct: 27  IFVDEYDPTIE-DSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDI 125
           T++++F  +     +  R  +       LVG K DL      R V + + +  A Q  + 
Sbjct: 85  TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWCNC 141
Query: 126 LHFETSSRSGFQVENAFTAVTQEI 149
              E+S++S   V   F  + ++I
Sbjct: 142 AFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 30  GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIEP 88
           G  + L +WDTAGQ+ +  +   +Y ++   LL +D+TS  SF++I   W  E   H   
Sbjct: 79  GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCK 137
Query: 89  HRPVFALVGCKLDL 102
             P+  +VGCK DL
Sbjct: 138 KVPII-VVGCKTDL 150

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV   +  R V   D +   LQ+ DT G  +F ++ +         +LVY ITSR S E
Sbjct: 34  PTVEDTY--RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLE 91
Query: 74  HI-PVW--MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
            + P++  + E K  +E   P+  LVG K D   S   REV  +EA+A A        ET
Sbjct: 92  ELKPIYEQICEIKGDVESI-PIM-LVGNKCDESPS---REVQSSEAEALARTWKCAFMET 146
Query: 131 SSRSGFQVENAFTAVTQEIYN 151
           S++    V+  F    QE+ N
Sbjct: 147 SAKLNHNVKELF----QELLN 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITK-SYYRNSVGALLVYDITSRAS 71
           DPT+   +  R     D   + +++ DTAGQE   +I +  + R   G +LVYDIT R S
Sbjct: 58  DPTLESTY--RHQATIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGS 113
Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           FE +           +P      LVG K DL  S   R+VS  E +  A++     +E S
Sbjct: 114 FEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS---RQVSTEEGEKLATELACAFYECS 170
Query: 132 SRSG-FQVENAFTAVTQEIYNR 152
           + +G   +   F  + +E+  R
Sbjct: 171 ACTGEGNITEIFYELCREVRRR 192

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14  PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
             +G D + R + M DG     I L +W+  G+  +  +     +     L+VY IT RA
Sbjct: 69  EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 125
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL++    REVS +E +A A   D    ET
Sbjct: 126 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC---REVSVSEGRACAVVFDCKFIET 182
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
           S+     V+  F  + +++  R  S
Sbjct: 183 SAAVQHNVKELFEGIVRQVRLRRDS 207

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 14  PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
             +G D + R + M DG     I L +W+  G+  +  +     +     L+VY IT RA
Sbjct: 38  EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 94
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL++    REVS +E +A A   D    ET
Sbjct: 95  SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC---REVSVSEGRACAVVFDCKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
           S+     V+  F  + +++  R
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLR 173

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14  PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
             +G D + R + M DG     I L +W+  G+  +  +     +     L+VY IT RA
Sbjct: 38  EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRA 94
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL++    REVS +E +A A   D    ET
Sbjct: 95  SFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDCKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
           S+     V+  F  + +++  R  S
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLRRDS 176

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   I   +WD  GQ+R RS+ + YYRN+ G + V D   R+   
Sbjct: 47  PTIG--FNVETVQYKN---ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIG 101
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                M       E    V+ +   K DL ++    E++E
Sbjct: 102 EAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITE 141

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 14  PTVGVDFFARLVTMRDGAR---IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
             +G D + R + M DG     I L +W+  G+  +  +     +     L+VY IT RA
Sbjct: 38  EVLGEDTYERTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 94
Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL++    REVS +E +A A   D    ET
Sbjct: 95  SFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDXKFIET 151
Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
           S+     V+  F  + +++  R  S
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLRRDS 176

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 23  RLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-PVW--M 79
           R V   D +   LQ+ DT G  +F ++ +         +LV+ +TS+ S E + P++  +
Sbjct: 46  RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105
Query: 80  MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVE 139
           ++ K  +E   PV  LVG K D  Q    REV   EA+A A +      ETS++  + V+
Sbjct: 106 VQIKGSVEDI-PVM-LVGNKCDETQ----REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159
Query: 140 NAF 142
             F
Sbjct: 160 ELF 162

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 15  TVGVDFFARLVTMRDGA-RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           T GV+     VT+ D    ++L L DTAG + ++     Y+     A+LV+D++S  SFE
Sbjct: 54  TSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFE 113
Query: 74  HIPVWMMEAKRHIEP--HRPVFA-LVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
               W  E  +   P   RP+ A LV  K DL       +V    A+ +A+ N +  F+ 
Sbjct: 114 SCKAW-FELLKSARPDRERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNTLDFFDV 170
Query: 131 SSR-SGFQVENAFTAVTQEIY 150
           S+   G   +  F ++    Y
Sbjct: 171 SANPPGKDADAPFLSIATTFY 191

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   I   +WD  GQ+R RS+ + YYRN+ G + V D   R+   
Sbjct: 47  PTIG--FNVETVQYKN---ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIG 101
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                M       E     + +   K DL ++    E++E
Sbjct: 102 EAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITE 141

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   I   +WD  GQ+R RS+ + YYRN+ G + V D   R+   
Sbjct: 30  PTIG--FNVETVQYKN---ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIG 84
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                M       E     + +   K DL ++    E++E
Sbjct: 85  EAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITE 124

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    VT ++   +K Q+WD  GQ   R   + YY N+   + V D   R    
Sbjct: 32  PTIG--FNVETVTYKN---LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 86
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
                ++      E  + +  +   K D+ Q+  P E++ A             F+TS+ 
Sbjct: 87  ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSAT 146
Query: 134 SGFQVENAFTAVTQEIYNR 152
            G  ++ A   + + + +R
Sbjct: 147 KGTGLDEAMEWLVETLKSR 165

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
           DG    L ++D   Q+  R +           ++VY +T + SFE      ++ +R  + 
Sbjct: 50  DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 109
Query: 89  HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
                 LVG K DL++S   REVS  E +A A   D    ETS+     V+  F  V ++
Sbjct: 110 DDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 149 IYNRVQS 155
           I  R  S
Sbjct: 167 IRLRRDS 173

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A L T  +  R++L LWDT+G   + ++    Y +S   LL +DI+   + +
Sbjct: 42  PTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 99
Query: 74  H-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
             +  W  E   +    R    L+GCK DL
Sbjct: 100 SALKKWRTEILDYCPSTR--VLLIGCKTDL 127

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
           DG    L ++D   Q+  R +           ++VY +T + SFE      ++ +R  + 
Sbjct: 50  DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 109
Query: 89  HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
                 LVG K DL++S   REVS  E +A A   D    ETS+     V+  F  V ++
Sbjct: 110 DDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 149 IYNRVQS 155
           I  R  S
Sbjct: 167 IRLRRDS 173

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y +   PTV  ++ A L T  +  R++L LWDT+G   + ++    Y +S   LL +DI+
Sbjct: 52  YPETYVPTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 109
Query: 68  SRASFEH-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
              + +  +  W  E   +    R    L+GCK DL
Sbjct: 110 RPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDL 143

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 44  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 101
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 102 NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 129

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 38  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 95
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 96  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 123

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y +   PTV  ++ A L T  +  R++L LWDT+G   + ++    Y +S   LL +DI+
Sbjct: 35  YPETYVPTVFENYTACLET--EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 92
Query: 68  SRASFEH-IPVWMMEAKRHIEPHRPVFALVGCKLDL 102
              + +  +  W  E   +    R    L+GCK DL
Sbjct: 93  RPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDL 126

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
           DG    L ++D   Q+  R +           ++VY +T + SFE      ++ +R  + 
Sbjct: 45  DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 104
Query: 89  HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
                 LVG K DL++S   REVS  E +A A   D    ETS+     V+  F  V ++
Sbjct: 105 DDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161
Query: 149 IYNR 152
           I  R
Sbjct: 162 IRLR 165

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 36  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 94  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 121

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A +  M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 41  PTV-FDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 98
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 99  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 126

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 30  PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    +  +   K DL  +  P E+ E
Sbjct: 85  EARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQE 124

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 41  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 98
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 99  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 126

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 37  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 94
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 95  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 122

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 35  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 92
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 93  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 120

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 24  LVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-VWMMEA 82
           +  M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE++   W+ E 
Sbjct: 42  VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101
Query: 83  KRHIEPHRPVFALVGCKLDL 102
             H  P  P F LVG ++DL
Sbjct: 102 THHC-PKTP-FLLVGTQIDL 119

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 37  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 94
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 95  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 122

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 36  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 93
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 94  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 121

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 16  VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV-----GALLVYDITSRA 70
           +G D + R +T+ DG    L + DT   E+   + KS+ + S        ++VY I  R 
Sbjct: 36  LGEDVYERTLTV-DGEDTTLVVVDTWEAEK---LDKSWSQESCLQGGSAYVIVYSIADRG 91
Query: 71  SFEHIPVWMMEAKR-HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
           SFE      ++ +R H   H P+  LVG K DL +    REVS  E +A A   D    E
Sbjct: 92  SFESASELRIQLRRTHQADHVPII-LVGNKADLARC---REVSVEEGRACAVVFDCKFIE 147
Query: 130 TSSRSGFQVENAF 142
           TS+     V   F
Sbjct: 148 TSATLQHNVAELF 160

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 38  PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95
Query: 74  HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
            +   + + K  I+   P     LVGCK DL
Sbjct: 96  SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 123

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  VT+  G +  L L+DTAGQE +  +    Y  +   L+ + + + ASF+
Sbjct: 49  PTV-FDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 106
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E K +  P+ P F L+G ++DL
Sbjct: 107 NVKEEWVPELKEY-APNVP-FLLIGTQIDL 134

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 54  PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 111
Query: 74  HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
            +   + + K  I+   P     LVGCK DL
Sbjct: 112 SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 139

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V +  G    L L+DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTVXI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 42  PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 96
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    +  +   K DL  +  P E+ E
Sbjct: 97  EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 136

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 30  PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    +  +   K DL  +  P E+ E
Sbjct: 85  EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 124

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 43  PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 97
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    +  +   K DL  +  P E+ E
Sbjct: 98  EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 137

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 59  PTVFENYTASFEI--DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116
Query: 74  HIPVWMMEAKRHIEPHRP--VFALVGCKLDL 102
            +   + + K  I+   P     LVGCK DL
Sbjct: 117 SV---LKKWKGEIQEFCPNTKMLLVGCKSDL 144

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 30  PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 84
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    +  +   K DL  +  P E+ E
Sbjct: 85  EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 124

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D +A  V M  G    L L DTAGQE +  +    Y  +   L+ + + S +SFE
Sbjct: 34  PTV-FDNYAVTV-MIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91
Query: 74  HIP-VWMMEAKRHIEPHRPVFALVGCKLDL 102
           ++   W+ E   H  P  P F LVG ++DL
Sbjct: 92  NVKEKWVPEITHHC-PKTP-FLLVGTQIDL 119

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG  F    VT ++   +K  +WD  GQ++ R + + YY  + G + V D   R   +
Sbjct: 352 PTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 406
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                +       E    +  +   K DL  +  P E+ E
Sbjct: 407 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 446

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 61  LLVYDITSRASFEHIPVWMMEAKRHIEPHR--PVFALVGCKLDLLQSGVPREVSEAEAKA 118
           L+V+ +T R SF  +P  ++   R   PH   PV  LVG K DL +S   REVS  E + 
Sbjct: 90  LIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVI-LVGNKSDLARS---REVSLEEGRH 144
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A      H ETS+         F    ++I  R
Sbjct: 145 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G +     V       I   +WD  GQ+R RS+ + YY N+ G + V D   R+   
Sbjct: 47  PTIGFN-----VECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIG 101
Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE 113
                M       E     + +   K DL ++    E++E
Sbjct: 102 EAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITE 141

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 61  LLVYDITSRASFEHIPVWMMEAKRHIEPHR--PVFALVGCKLDLLQSGVPREVSEAEAKA 118
           L+V+ +T R SF  +P  ++   R   PH   PV  LVG K DL +S   REVS  E + 
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVI-LVGNKSDLARS---REVSLEEGRH 155
Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
            A      H ETS+         F    ++I  R
Sbjct: 156 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-70
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-70
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-69
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-69
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	9e-69
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	7e-68
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-67
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-66
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-66
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-65
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-65
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-65
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-65
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-64
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-63
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-63
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-63
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-63
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-63
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-63
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-63
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-62
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-62
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-62
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	7e-62
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-61
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-61
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-61
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-61
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-61
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	7e-61
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	8e-61
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-60
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-59
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-59
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-59
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-59
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-58
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	9e-56
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-55
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-52
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-51
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-51
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-50
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-47
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-47
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-47
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-46
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-46
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-45
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-45
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-45
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-45
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-45
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-45
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-44
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-44
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-42
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-41
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-41
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-40
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-39
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-38
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-35
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	8e-34
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-30
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-27
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-27
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-26
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-26
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	8e-26
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-25
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-24
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-23
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-23
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-23
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	5e-22
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-20
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-08
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-06
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-06
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-06
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-06
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-06
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-06
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-06
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-06
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-06
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-06
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-05
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-04

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  211 bits (540), Expect = 3e-70
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 10/191 (5%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +   S  T+GV+F  R + + +G RIK Q+WDTAGQER+R+IT +YYR +VGAL+VYDI+
Sbjct: 38  FNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS 96

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
             +S+E+   W+ E + + + +     L+G K DL      R V   E+K FA +N +L 
Sbjct: 97  KSSSYENCNHWLSELRENADDN-VAVGLIGNKSDLAHL---RAVPTEESKTFAQENQLLF 152

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSR-----TNAVLDDDL 182
            ETS+ +   V+ AF  +   IY +V      + D         +      T ++     
Sbjct: 153 TETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPN 212

Query: 183 MLAEPAKSSCC 193
              +   ++CC
Sbjct: 213 ENKKANGNNCC 223

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  209 bits (535), Expect = 5e-70
 Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 5/155 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +   S+ T+GV+F ++++ +  G  +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDIT
Sbjct: 35  FKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 93

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           SR ++  +  W+ +A+     +  V  L G K DL      REV+  EA  FA +N+++ 
Sbjct: 94  SRETYNALTNWLTDARMLASQN-IVIILCGNKKDLDAD---REVTFLEASRFAQENELMF 149

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVED 162
            ETS+ +G  VE AF    ++I N+++SG+   E 
Sbjct: 150 LETSALTGENVEEAFVQCARKILNKIESGELDPER 184

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  209 bits (534), Expect = 1e-69
 Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 5/155 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + Q S+ T+GV+F +R+V +  G  +KLQ+WDTAGQERFRS+T+SYYR + GALLVYDIT
Sbjct: 50  FKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 108

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           SR ++  +  W+ +A+    P+  V  L G K DL      REV+  EA  FA +N+++ 
Sbjct: 109 SRETYNSLAAWLTDARTLASPN-IVVILCGNKKDLDPE---REVTFLEASRFAQENELMF 164

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVED 162
            ETS+ +G  VE AF    + I N++ SG+   E 
Sbjct: 165 LETSALTGENVEEAFLKCARTILNKIDSGELDPER 199

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  207 bits (529), Expect = 5e-69
 Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +  + D T+GV+F AR+V + DG +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT
Sbjct: 46  FQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 104

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R +F H+  W+ +A++H   +  V  L+G K DL      R+V   E +AFA ++ ++ 
Sbjct: 105 RRETFNHLTSWLEDARQHSSSNM-VIMLIGNKSDLESR---RDVKREEGEAFAREHGLIF 160

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDY 158
            ETS+++   VE AF    +EIY ++Q G +
Sbjct: 161 METSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  207 bits (528), Expect = 9e-69
 Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 15/162 (9%)

Query: 12  SDPTVGVDFFARLVTM---------RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
              TVG+DF  + V             G RI LQLWDTAG ERFRS+T +++R+++G LL
Sbjct: 40  FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           ++D+T+  SF ++  W+ + + H     P   L G K DL      R V E EA+  A +
Sbjct: 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ---RAVKEEEARELAEK 156

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGW 164
             I +FETS+ +G  + +A   +   I  R++     V+  W
Sbjct: 157 YGIPYFETSAANGTNISHAIEMLLDLIMKRMER---SVDKSW 195

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  204 bits (522), Expect = 7e-68
 Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +   S  T+GV+F  R + + DG  IK Q+WDTAGQER+R IT +YYR +VGALLVYDI 
Sbjct: 30  FNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA 88

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              ++E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N++  
Sbjct: 89  KHLTYENVERWLKELRDHADSN-IVIMLVGNKSDLRHL---RAVPTDEARAFAEKNNLSF 144

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
            ETS+     VE AF  +  EIY  V           +     
Sbjct: 145 IETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGN 187

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  203 bits (519), Expect = 3e-67
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 12/160 (7%)

Query: 12  SDPTVGVDFFARLVTMRD---------GARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
              TVG+DF  + V               ++ LQLWDTAGQERFRS+T +++R+++G LL
Sbjct: 54  FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 113

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           ++D+TS+ SF ++  WM + + +     P   L+G K DL      REV+E +A+  A +
Sbjct: 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ---REVNERQARELADK 170

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVED 162
             I +FETS+ +G  VE A   +   I  R++    K + 
Sbjct: 171 YGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQI 210

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  202 bits (517), Expect = 4e-67
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 7/159 (4%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+GVDF  + +++ DG + KL +WDTAGQERFR++T SYYR + G +LVYD+T R +
Sbjct: 44  LAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 102

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F  +  W+ E + +   +  V  LVG K+D       REV   E   FA ++ +L  E S
Sbjct: 103 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN----REVDRNEGLKFARKHSMLFIEAS 158

Query: 132 SRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
           +++   V+ AF  + ++I      G ++ E+   G  +G
Sbjct: 159 AKTCDGVQCAFEELVEKIIQTP--GLWESENQNSGPSSG 195

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  200 bits (512), Expect = 2e-66
 Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 5/143 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           ++     T+GV+F  R++ +  G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT
Sbjct: 40  FMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 98

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R+++ H+  W+ +A+    P+  V  L+G K DL      R+V+  EAK FA +N +L 
Sbjct: 99  RRSTYNHLSSWLTDARNLTNPN-TVIILIGNKADLEAQ---RDVTYEEAKQFAEENGLLF 154

Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
            E S+++G  VE+AF    ++IY
Sbjct: 155 LEASAKTGENVEDAFLEAAKKIY 177

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  199 bits (508), Expect = 9e-66
 Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 5/148 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +   S  T+GV+F  R V +   A +K Q+WDTAG ER+R+IT +YYR +VGALLV+D+T
Sbjct: 50  FSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT 108

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              ++  +  W+ E   H E    V  LVG K DL Q+   REV   EA+ FA  N +L 
Sbjct: 109 KHQTYAVVERWLKELYDHAEAT-IVVMLVGNKSDLSQA---REVPTEEARMFAENNGLLF 164

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
            ETS+     VE AF  V +EI+ +V  
Sbjct: 165 LETSALDSTNVELAFETVLKEIFAKVSK 192

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  199 bits (508), Expect = 1e-65
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      TVG+DF  + +   +  RIKLQ+WDTAG ER+R+IT +YYR ++G +L+YDIT
Sbjct: 33  FTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDIT 91

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF  +  W  + K +   +     LVG K D+      R VS    +  A       
Sbjct: 92  NEESFNAVQDWSTQIKTYSWDN-AQVLLVGNKCDMEDE---RVVSSERGRQLADHLGFEF 147

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTG 170
           FE S++    V+  F  +   I  ++       +    G K G
Sbjct: 148 FEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQG 190

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  199 bits (507), Expect = 1e-65
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y +    T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T
Sbjct: 41  YTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 99

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            + SF ++  W+ E  R+   +     LVG K DL      + V    AK FA    I  
Sbjct: 100 DQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTK---KVVDYTTAKEFADSLGIPF 155

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIK 168
            ETS+++   VE +F  +  EI  R+  G          +K
Sbjct: 156 LETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  198 bits (506), Expect = 2e-65
 Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 5/143 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +   S  T+GV+F  R + + DG  IK Q+WDTAG ER+R+IT +YYR +VGALLVYDI 
Sbjct: 54  FNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIA 112

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              ++E++  W+ E + H + +  V  LVG K DL      R V   EA+AFA +N +  
Sbjct: 113 KHLTYENVERWLKELRDHADSN-IVIMLVGNKSDLRHL---RAVPTDEARAFAEKNGLSF 168

Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
            ETS+     VE AF  +  EIY
Sbjct: 169 IETSALDSTNVEAAFQTILTEIY 191

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  198 bits (505), Expect = 2e-65
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+G+DFF R +T+     + LQ+WD  GQ     +   Y   + G LLVYDIT+  S
Sbjct: 35  YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS 94

Query: 72  FEHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE 129
           FE++  W    K+  E    +P+ ALVG K+DL      R +   +   F  +N      
Sbjct: 95  FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM---RTIKPEKHLRFCQENGFSSHF 151

Query: 130 TSSRSGFQVENAFTAVTQEIYNRVQS 155
            S+++G  V   F  V  EI     +
Sbjct: 152 VSAKTGDSVFLCFQKVAAEILGIKLN 177

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  197 bits (502), Expect = 5e-65
 Identities = 54/142 (38%), Positives = 88/142 (61%), Gaps = 5/142 (3%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
            TVG+DF  +++ + DG ++KLQ+WDTAGQERFRS+T +YYR++   LL+YD+T++ASF+
Sbjct: 42  STVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
           +I  W+ E   + +       L+G K+D       R V   + +  A +  +   ETS++
Sbjct: 101 NIQAWLTEIHEYAQHD-VALMLLGNKVDSAHE---RVVKREDGEKLAKEYGLPFMETSAK 156

Query: 134 SGFQVENAFTAVTQEIYNRVQS 155
           +G  V+ AFTA+ +E+  R   
Sbjct: 157 TGLNVDLAFTAIAKELKRRSMK 178

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  195 bits (499), Expect = 3e-64
 Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 13/186 (6%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y      T+GVDF  + V + DG  +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T
Sbjct: 33  YTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT 91

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            + SF  + +W+ E  R+      +  LVG K DL      R V    AK FA  N +  
Sbjct: 92  DQESFNGVKMWLQEIDRYATST-VLKLLVGNKCDLKDK---RVVEYDVAKEFADANKMPF 147

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
            ETS+     VE+AF  + ++I   +   +       +  K   +            +  
Sbjct: 148 LETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ--------SLT 199

Query: 188 AKSSCC 193
               CC
Sbjct: 200 NTGGCC 205

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  194 bits (495), Expect = 1e-63
 Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 6/150 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +    T+GVDF  + + +  G R+KLQ+WDTAGQERFR+IT+SYYR++ GA+L YDIT
Sbjct: 54  FSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT 112

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R+SF  +P W+ + +++   +  V  L+G K DL +    REVS AEA++ A   DIL 
Sbjct: 113 KRSSFLSVPHWIEDVRKYAGSN-IVQLLIGNKSDLSEL---REVSLAEAQSLAEHYDILC 168

Query: 128 F-ETSSRSGFQVENAFTAVTQEIYNRVQSG 156
             ETS++    VE AF  V  E+  R    
Sbjct: 169 AIETSAKDSSNVEEAFLRVATELIMRHGGP 198

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  194 bits (495), Expect = 1e-63
 Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 5/149 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+GVDF  + V + +G ++KLQ+WDTAGQERFRSIT+SYYR++   +L YDIT
Sbjct: 51  FPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT 109

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              SF  +P W+ E +++      +  LVG K+DL +    REVS+  A+ F+   D+ +
Sbjct: 110 CEESFRCLPEWLREIEQYASNK-VITVLVGNKIDLAER---REVSQQRAEEFSEAQDMYY 165

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
            ETS++    VE  F  +   + +  +  
Sbjct: 166 LETSAKESDNVEKLFLDLACRLISEARQN 194

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  193 bits (492), Expect = 2e-63
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 5/156 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G+DF  R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 33  FNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 91

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF++I  W+   + H         ++G K D+      R+VS+   +  A    I  
Sbjct: 92  NEKSFDNIRNWIRNIEEHASAD-VEKMILGNKCDVNDK---RQVSKERGEKLALDYGIKF 147

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDG 163
            ETS+++   VENAF  + ++I  ++         G
Sbjct: 148 METSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  193 bits (492), Expect = 2e-63
 Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 8/144 (5%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRA 70
           ++ T+GVDF  R V + DG RIK+QLWDTAGQERFR S+ + YYRN    + VYD+T+ A
Sbjct: 49  TEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 107

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SF  +P W+ E K+H+  +     LVG K DL  +    +V    A+ FA  + +  FET
Sbjct: 108 SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA---IQVPTDLAQKFADTHSMPLFET 164

Query: 131 S---SRSGFQVENAFTAVTQEIYN 151
           S         VE  F  +  ++ +
Sbjct: 165 SAKNPNDNDHVEAIFMTLAHKLKS 188

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  191 bits (489), Expect = 4e-63
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G+DF  + V + +G ++KLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 28  FNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 86

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              +F +I  W      H         LVG K D+      R V+  + +A A +  I  
Sbjct: 87  DERTFTNIKQWFKTVNEHANDE-AQLLLVGNKSDMET----RVVTADQGEALAKELGIPF 141

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
            E+S+++   V   F  + + I  ++ S
Sbjct: 142 IESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  192 bits (491), Expect = 4e-63
 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+GVDF  + + + DG R  LQLWDTAGQERFRSI KSY+R + G LL+YD+T   S
Sbjct: 57  ISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS 115

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP---REVSEAEAKAFASQNDILHF 128
           F +I  W+   +       P+  LVG K D+  +      + V     +  A     L  
Sbjct: 116 FLNIREWVDMIEDAAHETVPIM-LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174

Query: 129 ETSSRSGFQVENAFTAVTQEIYNR 152
           ETS++ G  +  A   + +E+  R
Sbjct: 175 ETSAKDGSNIVEAVLHLAREVKKR 198

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  191 bits (488), Expect = 6e-63
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 6/154 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+GVDF  R V + +G ++KLQ+WDTAGQERFR+IT +YYR + G ++VYD+T
Sbjct: 34  FSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 92

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           S  SF ++  W+ E  ++ +       LVG K D  +    + V   +A  FA Q  I  
Sbjct: 93  SAESFVNVKRWLHEINQNCD--DVCRILVGNKNDDPER---KVVETEDAYKFAGQMGIQL 147

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVE 161
           FETS++    VE  F  +T+ +    +    K +
Sbjct: 148 FETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  190 bits (486), Expect = 1e-62
 Identities = 47/150 (31%), Positives = 89/150 (59%), Gaps = 5/150 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +++  + T+G  FF++ + + + A +K ++WDTAGQER+ S+   YYR +  A++V+D+T
Sbjct: 37  FVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT 95

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           ++ASFE    W+ E +    P+  V AL G K DLL +   R+V+  +A+ +A +N +  
Sbjct: 96  NQASFERAKKWVQELQAQGNPNM-VMALAGNKSDLLDA---RKVTAEDAQTYAQENGLFF 151

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGD 157
            ETS+++   V+  F  + + +     + +
Sbjct: 152 METSAKTATNVKEIFYEIARRLPRVQPTEN 181

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  191 bits (487), Expect = 2e-62
 Identities = 59/142 (41%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+GVDF  R + + DG  IKLQ+WDTAGQERFR+IT SYYR + G ++VYD+T + S
Sbjct: 62  YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F ++  W+ E  R+   +     LVG K DL      + V    AK FA    I   ETS
Sbjct: 121 FNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTK---KVVDYTTAKEFADSLGIPFLETS 176

Query: 132 SRSGFQVENAFTAVTQEIYNRV 153
           +++   VE +F  +  EI  R+
Sbjct: 177 AKNATNVEQSFMTMAAEIKKRM 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  190 bits (484), Expect = 3e-62
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      TVG+DF  + V      RIKLQ+WDTAGQER+R+IT +YYR ++G LL+YDI 
Sbjct: 47  FTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIA 105

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           ++ SF  +  W  + K +   +     LVG K DL      R V   + +  A       
Sbjct: 106 NQESFAAVQDWATQIKTYSWDN-AQVILVGNKCDLEDE---RVVPAEDGRRLADDLGFEF 161

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQ 154
           FE S++    V+  F  +   I  ++ 
Sbjct: 162 FEASAKENINVKQVFERLVDVICEKMN 188

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  190 bits (484), Expect = 7e-62
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G+DF  + V + +G ++KLQLWDTAGQERFR+IT +YYR ++G +LVYD+T
Sbjct: 45  FNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT 103

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              +F +I  W      H         LVG K D+      R V+  + +A A +  I  
Sbjct: 104 DERTFTNIKQWFKTVNEHANDE-AQLLLVGNKSDMET----RVVTADQGEALAKELGIPF 158

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTN 175
            E+S+++   V   F  + + I  ++ S         +      +  +
Sbjct: 159 IESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGS 206

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  188 bits (479), Expect = 1e-61
 Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 5/143 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +  + T+G  F  + V + D   +K ++WDTAGQER+ S+   YYR +  A++VYDIT
Sbjct: 31  FHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT 89

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF     W+ E +R   P+  V AL G K DL      R V   EA+++A  N +L 
Sbjct: 90  NEESFARAKNWVKELQRQASPNI-VIALSGNKADLANK---RAVDFQEAQSYADDNSLLF 145

Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
            ETS+++   V   F A+ +++ 
Sbjct: 146 METSAKTSMNVNEIFMAIAKKLP 168

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  189 bits (482), Expect = 1e-61
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 8/161 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLW--DTAGQERFRSITKSYYRNSVGALLVYD 65
           +++    T GV+     VT+     + ++L+  DTAG + ++     Y+     A+LV+D
Sbjct: 47  FLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFD 105

Query: 66  ITSRASFEHIPVWMMEAKRHIEPHRP--VFALVGCKLDLLQSGVPREVSEAEAKAFASQN 123
           ++S  SFE    W    K             LV  K DL       +V    A+ +A+ N
Sbjct: 106 VSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL--PPQRHQVRLDMAQDWATTN 163

Query: 124 DILHFETSSR-SGFQVENAFTAVTQEIYNRVQSGDYKVEDG 163
            +  F+ S+   G   +  F ++    Y   +      +D 
Sbjct: 164 TLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAFQDA 204

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  187 bits (478), Expect = 3e-61
 Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      TVG+DF  + V      R+KLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT
Sbjct: 48  FTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 106

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF  +  W  + K +   +     LVG K D+ +    R V   + +  A Q     
Sbjct: 107 NEESFNAVQDWATQIKTYSWDN-AQVILVGNKCDMEEE---RVVPTEKGQLLAEQLGFDF 162

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQ 154
           FE S++    V  AF  +   I +++ 
Sbjct: 163 FEASAKENISVRQAFERLVDAICDKMS 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  187 bits (478), Expect = 4e-61
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +    TVGVDF  + V +  G +I+LQ+WDTAGQERF SIT +YYR++ G +LVYDIT
Sbjct: 51  FCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT 109

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
            + +F+ +P WM    ++         LVG KLD       RE++  + + FA Q   + 
Sbjct: 110 KKETFDDLPKWMKMIDKYASED-AELLLVGNKLDCETD---REITRQQGEKFAQQITGMR 165

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRV 153
             E S++  F V+  F  +  +I  ++
Sbjct: 166 FCEASAKDNFNVDEIFLKLVDDILKKM 192

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  186 bits (475), Expect = 5e-61
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
            +PT+G  F  + V        K  +WDTAG ERFR++   YYR S  A++VYDIT   +
Sbjct: 35  INPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET 93

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F  +  W+ E ++H  P   V A+ G K DL      REV E +AK +A     +  ETS
Sbjct: 94  FSTLKNWVRELRQHGPPS-IVVAIAGNKCDLTDV---REVMERDAKDYADSIHAIFVETS 149

Query: 132 SRSGFQVENAFTAVTQEIY 150
           +++   +   F  +++ I 
Sbjct: 150 AKNAININELFIEISRRIP 168

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  187 bits (477), Expect = 7e-61
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+G+DF ++ + + +   ++LQLWDTAG ERFRS+  SY R+S  A++VYDIT+  S
Sbjct: 45  YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS 103

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F+    W+ + +        +  LVG K DL      R+VS  E +  A + +++  ETS
Sbjct: 104 FQQTTKWIDDVRTERGSD-VIIMLVGNKTDLADK---RQVSIEEGERKAKELNVMFIETS 159

Query: 132 SRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEPAKSS 191
           +++G+ V+  F  V   +     + D   ED    IK    +             P    
Sbjct: 160 AKAGYNVKQLFRRVAAALPGMESTQDRSREDM-IDIKLEKPQEQ-----------PVSEG 207

Query: 192 CC 193
            C
Sbjct: 208 GC 209

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  186 bits (475), Expect = 8e-61
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 5/144 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
             PT+G  F  + V        K  +WDTAGQERF S+   YYR S  A++VYDIT + S
Sbjct: 52  ISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS 110

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F  +  W+ E K H   +  V A+ G K DL      REV   +AK +A     +  ETS
Sbjct: 111 FYTLKKWVKELKEHGPEN-IVMAIAGNKCDLSDI---REVPLKDAKEYAESIGAIVVETS 166

Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
           +++   +E  F  ++++I      
Sbjct: 167 AKNAINIEELFQGISRQIPPLDPH 190

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  185 bits (471), Expect = 2e-60
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+G  F  + + +  G R+ L +WDTAGQERF ++   YYR+S GA+LVYDIT   S
Sbjct: 35  HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 93

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F+ +  W+ E ++ +        +VG K+DL +    R VS  EA+++A      H+ TS
Sbjct: 94  FQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEKE---RHVSIQEAESYAESVGAKHYHTS 149

Query: 132 SRSGFQVENAFTAVTQEIY 150
           ++    +E  F  + + + 
Sbjct: 150 AKQNKGIEELFLDLCKRMI 168

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  183 bits (466), Expect = 1e-59
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+GVDF  R + + +   ++L LWDTAGQE F +ITK+YYR +   +LV+  T R S
Sbjct: 34  YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES 92

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           FE I  W  +    +       ALV  K+DLL       +   EA+  A +  +  + TS
Sbjct: 93  FEAISSWREKVVAEVGD--IPTALVQNKIDLLDD---SCIKNEEAEGLAKRLKLRFYRTS 147

Query: 132 SRSGFQVENAFTAVTQEIYNR 152
            +    V   F  + ++   +
Sbjct: 148 VKEDLNVSEVFKYLAEKHLQK 168

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  182 bits (464), Expect = 2e-59
 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 5/140 (3%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+G+DF ++ + + +   ++LQLWDTAGQERFRS+  SY R+S  A++VYDIT+  S
Sbjct: 43  YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS 101

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F     W+ + +        +  LVG K DL      R+VS  E +  A + +++  ETS
Sbjct: 102 FHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETS 157

Query: 132 SRSGFQVENAFTAVTQEIYN 151
           +++G+ V+  F  V   +  
Sbjct: 158 AKAGYNVKQLFRRVAAALPG 177

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  181 bits (463), Expect = 3e-59
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+GV+F  + + + DG  + +Q+WDTAGQERFRS+   +YR S   LL + +    S
Sbjct: 36  LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94

Query: 72  FEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILH 127
           F+++  W  E   + +   P    F ++G K+D+ +    R+VS  EA+A+   N D  +
Sbjct: 95  FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPY 150

Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
           FETS++    V  AF    + +   
Sbjct: 151 FETSAKDATNVAAAFEEAVRRVLAT 175

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  181 bits (461), Expect = 8e-59
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+G DF  + VT+       +Q+WDTAGQERF+S+  ++YR +   +LVYD+T+ +S
Sbjct: 37  YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96

Query: 72  FEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFA-SQNDILH 127
           FE+I  W  E   H   + P    F ++G K+D       + VSE  A+  A S  DI  
Sbjct: 97  FENIKSWRDEFLVHANVNSPETFPFVILGNKIDA--EESKKIVSEKSAQELAKSLGDIPL 154

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
           F TS+++   V+ AF  + +    + Q+
Sbjct: 155 FLTSAKNAINVDTAFEEIARSALQQNQA 182

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  181 bits (461), Expect = 2e-58
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 20/186 (10%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+G DF  + V + D   + +Q+WDTAGQERF+S+  ++YR +   +LV+D+T+  +
Sbjct: 37  YKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT 95

Query: 72  FEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAF-ASQNDILH 127
           F+ +  W  E      P  P    F ++G K+DL      R+V+   A+A+  S+N+I +
Sbjct: 96  FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL----ENRQVATKRAQAWCYSKNNIPY 151

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDGWEGIKTGFSRTNAVLDDDLMLAEP 187
           FETS++    VE AF  + +    +    +   E   E IK   +            A+ 
Sbjct: 152 FETSAKEAINVEQAFQTIARNALKQETEVELYNEFP-EPIKLDKNER----------AKA 200

Query: 188 AKSSCC 193
           +  SC 
Sbjct: 201 SAESCS 206

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  174 bits (443), Expect = 9e-56
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 43/184 (23%)

Query: 8   YIQISDPTVGVDFFARLVTMRD------------------------------------GA 31
           + + ++ T+G  F   +V + D                                      
Sbjct: 32  FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC 91

Query: 32  RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP 91
            IK  +WDTAGQER+ SI   YYR +  A++V+DI++  + +    W+ + K        
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNY 148

Query: 92  VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
           +  LV  K+D  +     +V   E + +A  N++L  +TS+++G  ++N F  + +EIY 
Sbjct: 149 IIILVANKIDKNK----FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204

Query: 152 RVQS 155
            + +
Sbjct: 205 NIIN 208

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  174 bits (444), Expect = 1e-55
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
            + TVG            G  IK  +WDTAGQE+   +   YY  + GA+L +D+TSR +
Sbjct: 40  YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT 99

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
            +++  W+ E +  +    P+  +   K+D+      +++S+          +  +FE S
Sbjct: 100 CQNLARWVKEFQAVVGNEAPI-VVCANKIDIKNR---QKISKKLVMEVLKGKNYEYFEIS 155

Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
           +++       F  + +    R   
Sbjct: 156 AKTAHNFGLPFLHLARIFTGRPDL 179

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  166 bits (422), Expect = 2e-52
 Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
              T+GV+    +    +   IK  +WDTAGQE+F  +   YY  +  A++++D+TSR +
Sbjct: 44  YVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 102

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           ++++P W  +  R  E       L G K+D+          +A++  F  + ++ +++ S
Sbjct: 103 YKNVPNWHRDLVRVCE--NIPIVLCGNKVDI-----KDRKVKAKSIVFHRKKNLQYYDIS 155

Query: 132 SRSGFQVENAFTAVTQEIYNRVQ 154
           ++S +  E  F  + +++     
Sbjct: 156 AKSNYNFEKPFLWLARKLIGDPN 178

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  162 bits (412), Expect = 1e-51
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 2/141 (1%)

Query: 12  SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS 71
            +PT+G  F  + VT+ +   +K ++WDTAGQERF S+   YYRN+  AL+VYD+T   S
Sbjct: 32  KEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS 90

Query: 72  FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           F     W+ E          + ALVG K+D LQ G  R+V+  E +  A +  +L FETS
Sbjct: 91  FIKARHWVKELHEQASKD-IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETS 149

Query: 132 SRSGFQVENAFTAVTQEIYNR 152
           +++G  V + F  + ++I  +
Sbjct: 150 AKTGENVNDVFLGIGEKIPLK 170

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  160 bits (407), Expect = 8e-51
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKS-YYRNSVGALLVYDI 66
                +     D + R + + D   + L ++D   Q       +    +     L+V+ +
Sbjct: 27  GDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSV 85

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T R SF  +P  ++  +     H     LVG K DL +S   REVS  E +  A      
Sbjct: 86  TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS---REVSLEEGRHLAGTLSCK 142

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNR 152
           H ETS+         F    ++I  R
Sbjct: 143 HIETSAALHHNTRELFEGAVRQIRLR 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  159 bits (404), Expect = 6e-50
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 5/149 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDI 66
                +P    D + R + + D   + L ++D   Q      +     +     L+V+ +
Sbjct: 48  GDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV 106

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T R SF  +P  ++  +     H     LVG K DL +S   REVS  E +  A      
Sbjct: 107 TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS---REVSLEEGRHLAGTLSCK 163

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRVQS 155
           H ETS+         F    ++I  R   
Sbjct: 164 HIETSAALHHNTRELFEGAVRQIRLRRGR 192

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  151 bits (385), Expect = 2e-47
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 5/140 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  D + ++ ++ DG   +L + DTAGQE F ++ + Y R   G LLV+ I  R SF
Sbjct: 39  DPTIE-DSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF 96

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
             +     +  R  +       LVG K DL      R+V  +EA AF + + + +FE S+
Sbjct: 97  NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ---RQVPRSEASAFGASHHVAYFEASA 153

Query: 133 RSGFQVENAFTAVTQEIYNR 152
           +    V+ AF  + + +   
Sbjct: 154 KLRLNVDEAFEQLVRAVRKY 173

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  151 bits (383), Expect = 4e-47
 Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           +PT   D + + V + DG  +++ + DTAGQE + +I  +Y+R+  G L V+ IT   SF
Sbjct: 34  EPTKA-DSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 91

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                +  +  R  E     F LVG K DL      R+VS  EAK  A Q ++ + ETS+
Sbjct: 92  AATADFREQILRVKEDENVPFLLVGNKSDLEDK---RQVSVEEAKNRADQWNVNYVETSA 148

Query: 133 RSGFQVENAFTAVTQEIYNR 152
           ++   V+  F  + +EI  R
Sbjct: 149 KTRANVDKVFFDLMREIRAR 168

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  150 bits (382), Expect = 6e-47
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 5/140 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
               G   + R + + DG    L ++D   Q+  R +           ++VY +T + SF
Sbjct: 31  AEAAG-HTYDRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSF 88

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E      ++ +R  +       LVG K DL++S   REVS  E +A A   D    ETS+
Sbjct: 89  EKASELRVQLRRARQTDDVPIILVGNKSDLVRS---REVSVDEGRACAVVFDCKFIETSA 145

Query: 133 RSGFQVENAFTAVTQEIYNR 152
                V+  F  V ++I  R
Sbjct: 146 ALHHNVQALFEGVVRQIRLR 165

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  150 bits (380), Expect = 2e-46
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           +PT    +  R   + DG  +++ + DTAGQE + +I  +Y+R+  G L V+ IT   SF
Sbjct: 48  EPTKADSY--RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 105

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                +  +  R  E     F LVG K DL      R+VS  EAK  A Q ++ + ETS+
Sbjct: 106 AATADFREQILRVKEDENVPFLLVGNKSDLEDK---RQVSVEEAKNRAEQWNVNYVETSA 162

Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
           ++   V+  F  + +EI  R   
Sbjct: 163 KTRANVDKVFFDLMREIRARKME 185

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  150 bits (380), Expect = 4e-46
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           +PT    +  R   + DG  +++ + DTAGQE + +I  +Y+R+  G L V+ IT   SF
Sbjct: 44  EPTKADSY--RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESF 101

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
                +  +  R  E     F LVG K DL      R+VS  EAK  A Q ++ + ETS+
Sbjct: 102 AATADFREQILRVKEDENVPFLLVGNKSDLEDK---RQVSVEEAKNRAEQWNVNYVETSA 158

Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
           ++   V+  F  + +EI  R   
Sbjct: 159 KTRANVDKVFFDLMREIRARKME 181

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  147 bits (374), Expect = 2e-45
 Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPTV   +    +         L L DTAGQ+ +  +  S+     G +LVY +TS  SF
Sbjct: 54  DPTVENTY--SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSF 111

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           + I     +        R    LVG K DL      REV   E K  A        E+S+
Sbjct: 112 QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE---REVQAVEGKKLAESWGATFMESSA 168

Query: 133 RSGFQVENAFTAVTQEIYNR 152
           R     +  FT V QEI   
Sbjct: 169 RENQLTQGIFTKVIQEIARV 188

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  146 bits (371), Expect = 3e-45
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  R   + DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 33  DPTIEDSY--RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 90

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I + ETS+
Sbjct: 91  EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA----RTVESRQAQDLARSYGIPYIETSA 146

Query: 133 RSGFQVENAFTAVTQEI 149
           ++   VE+AF  + +EI
Sbjct: 147 KTRQGVEDAFYTLVREI 163

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  146 bits (371), Expect = 3e-45
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 11  ISDPTVGVDFFARLVTMRD--GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS 68
           +   TVG+D     + +RD     + L +WD AG+E F S    +       L VYD++ 
Sbjct: 32  MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK 91

Query: 69  RAS-FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-- 125
             +  + +  W+   K           LVG  LD+      +       K   ++     
Sbjct: 92  GQAEVDAMKPWLFNIKARASS--SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149

Query: 126 ---LHFETSSRSGFQVENAFTAVTQEIYN 151
               HF  ++     +      +  E  N
Sbjct: 150 IRDYHFVNATEESDALAKLRKTIINESLN 178

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  146 bits (370), Expect = 4e-45
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--KSYYRNSVGALLVYDITSRA 70
           +   G D + R +T+ DG    L + DT   E+       +S  +     ++VY I  R 
Sbjct: 34  EQL-GEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG 91

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL +    REVS  E +A A   D    ET
Sbjct: 92  SFESASELRIQLRRTHQADHVPIILVGNKADLARC---REVSVEEGRACAVVFDCKFIET 148

Query: 131 SSRSGFQVENAFTAVTQEIYNR 152
           S+     V   F  V +++  R
Sbjct: 149 SATLQHNVAELFEGVVRQLRLR 170

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  146 bits (370), Expect = 5e-45
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  D + +   + D     L + DTAGQE F ++ + Y R   G L+VY +T +ASF
Sbjct: 48  DPTIE-DSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           EH+  +     R  +       LV  K+DL+     R+V+  + K  A++ +I + ETS+
Sbjct: 106 EHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEMATKYNIPYIETSA 162

Query: 133 RSG-FQVENAFTAVTQEIYNR 152
           +     V+  F  + + I  +
Sbjct: 163 KDPPLNVDKTFHDLVRVIRQQ 183

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  145 bits (369), Expect = 7e-45
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 5/143 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   F    +   +G    LQL DTAGQ+ +    ++Y  +  G +LVY +TS  SF
Sbjct: 36  DPTIENTF--TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF 93

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I V   +    +   +    LVG K DL      R +S  E KA A   +    E+S+
Sbjct: 94  EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME---RVISYEEGKALAESWNAAFLESSA 150

Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
           +      + F  +  E      +
Sbjct: 151 KENQTAVDVFRRIILEAEKMDGA 173

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  144 bits (366), Expect = 1e-44
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+  DF+ + + + D +   L++ DTAG E+F S+   Y +N  G +LVY + ++ SF
Sbjct: 33  DPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF 90

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           + I     +  R     +    LVG K+DL      REVS +E +A A +      ETS+
Sbjct: 91  QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE---REVSSSEGRALAEEWGCPFMETSA 147

Query: 133 RSGFQVENAFTAVTQEI 149
           +S   V+  F  + +++
Sbjct: 148 KSKTMVDELFAEIVRQM 164

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  143 bits (364), Expect = 5e-44
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  R   + DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 51  DPTIEDSY--RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF 108

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
             I ++  + KR  +       LVG K DL      R V   +A   A    I   ETS+
Sbjct: 109 ADINLYREQIKRVKDSDDVPMVLVGNKCDLPT----RTVDTKQAHELAKSYGIPFIETSA 164

Query: 133 RSGFQVENAFTAVTQEIYNR 152
           ++   VE+AF  + +EI   
Sbjct: 165 KTRQGVEDAFYTLVREIRQY 184

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  142 bits (361), Expect = 9e-44
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
            PTV   +  R V   D +   LQ+ DT G  +F ++ +         +LVY ITSR S 
Sbjct: 33  IPTVEDTY--RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL 90

Query: 73  EHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           E +     +          +   LVG K D   S   REV  +EA+A A        ETS
Sbjct: 91  EELKPIYEQICEIKGDVESIPIMLVGNKCDESPS---REVQSSEAEALARTWKCAFMETS 147

Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
           ++    V+  F  +      R  S
Sbjct: 148 AKLNHNVKELFQELLNLEKRRTVS 171

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  143 bits (362), Expect = 1e-43
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  R   + DG    L + DTAGQE + ++   Y R   G L V+ I +  SF
Sbjct: 34  DPTIEDSY--RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF 91

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E I  +  + KR  +       LVG K DL      R V   +A+  A    I   ETS+
Sbjct: 92  EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS----RTVDTKQAQDLARSYGIPFIETSA 147

Query: 133 RSGFQVENAFTAVTQEIYNRVQS 155
           ++   V++AF  + +EI    + 
Sbjct: 148 KTRQGVDDAFYTLVREIRKHKEK 170

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  140 bits (356), Expect = 1e-42
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
            PT+   +  R V   D +   LQ+ DT G  +F ++ +         +LV+ +TS+ S 
Sbjct: 38  IPTIEDTY--RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSL 95

Query: 73  EHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS 131
           E +        +       +   LVG K D  Q    REV   EA+A A +      ETS
Sbjct: 96  EELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ----REVDTREAQAVAQEWKCAFMETS 151

Query: 132 SRSGFQVENAFTAVTQEIYNRVQS 155
           ++  + V+  F  +      R  S
Sbjct: 152 AKMNYNVKELFQELLTLETRRNMS 175

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  138 bits (350), Expect = 1e-41
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 13  DPTVGVDFFARLVTM--RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           +   G D + R + +       I L +W+  G+  +  +     +     L+VY IT RA
Sbjct: 69  EVL-GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 125

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL++    REVS +E +A A   D    ET
Sbjct: 126 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC---REVSVSEGRACAVVFDCKFIET 182

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQSGD 157
           S+     V+  F  + +++  R  S +
Sbjct: 183 SAAVQHNVKELFEGIVRQVRLRRDSKE 209

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  137 bits (347), Expect = 1e-41
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  R     D  +  L++ DTAG E+F ++   Y +N  G  LVY IT++++F
Sbjct: 33  DPTIEDSY--RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETS 131
             +     +  R  +       LVG K DL      R V + + +  A Q  +    E+S
Sbjct: 91  NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE---RVVGKEQGQNLARQWCNCAFLESS 147

Query: 132 SRSGFQVENAFTAVTQEI 149
           ++S   V   F  + ++I
Sbjct: 148 AKSKINVNEIFYDLVRQI 165

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  135 bits (342), Expect = 1e-40
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DPT+   +  R     D   + +++ DTAGQE      + + R   G +LVYDIT R SF
Sbjct: 58  DPTLESTY--RHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSF 114

Query: 73  EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS 132
           E +           +P      LVG K DL  S   R+VS  E +  A++     +E S+
Sbjct: 115 EEVLPLKNILDEIKKPKNVTLILVGNKADLDHS---RQVSTEEGEKLATELACAFYECSA 171

Query: 133 RSGF-QVENAFTAVTQEIYNR 152
            +G   +   F  + +E+  R
Sbjct: 172 CTGEGNITEIFYELCREVRRR 192

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  132 bits (333), Expect = 2e-39
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 13  DPTVGVDFFARLVTM--RDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA 70
           +   G D + R + +       I L +W+  G+  +  +     +     L+VY IT RA
Sbjct: 38  EVL-GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRA 94

Query: 71  SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           SFE      ++ +R  +       LVG K DL++    REVS +E +A A   D    ET
Sbjct: 95  SFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDXKFIET 151

Query: 131 SSRSGFQVENAFTAVTQEIYNRVQS 155
           S+     V+  F  + +++  R  S
Sbjct: 152 SAAVQHNVKELFEGIVRQVRLRRDS 176

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  130 bits (329), Expect = 1e-38
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 10/146 (6%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y+Q   P      F + + + DG    L + D  G    +     +       + V+ + 
Sbjct: 45  YVQEESPEG--GRFKKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLE 96

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
              SF+ +  + +              LVG +   + +  PR + ++ A+  ++      
Sbjct: 97  DEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA-ISAANPRVIDDSRARKLSTDLKRCT 155

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNR 152
           ++ET +  G  VE  F  V Q++   
Sbjct: 156 YYETCATYGLNVERVFQDVAQKVVAL 181

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  129 bits (326), Expect = 2e-38
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           DP +  D ++   T+ D   + L++ DTA  +  R+  + Y   +   L+VY + SR SF
Sbjct: 51  DPNLE-DTYSSEETV-DHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSF 107

Query: 73  EHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFET 130
           +    ++     H +         L+G KLD+ Q    R+V++AE  A A +   L FE 
Sbjct: 108 DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY---RQVTKAEGVALAGRFGCLFFEV 164

Query: 131 SSRSGFQ-VENAFTAVTQEI 149
           S+   F+ V++ F    +E 
Sbjct: 165 SACLDFEHVQHVFHEAVREA 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  121 bits (306), Expect = 2e-35
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           + T   + + + + + DG    + + + AG    +     +   +   + V+ +    SF
Sbjct: 36  EKTES-EQYKKEMLV-DGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSF 88

Query: 73  EHIPVWM--MEAKRHIEPHRPVFALVG--CKLDLLQSGVPREVSEAEAKAF-ASQNDILH 127
           + +      + + R         ALVG   ++       PR V +A A+A  A      +
Sbjct: 89  QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS---PRVVGDARARALXADMKRCSY 145

Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
           +ET +  G  V+  F  V Q++   
Sbjct: 146 YETXATYGLNVDRVFQEVAQKVVTL 170

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  124 bits (313), Expect = 8e-34
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 15/151 (9%)

Query: 8   YIQISDPTVGVDFFARLVTM-------RDGARIKLQLWDTAGQERFRSITKSYYRNSVGA 60
           +      T G++   +            +        WD  GQE   +  + +   S   
Sbjct: 66  FDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125

Query: 61  LLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA 120
           +L+ D     +  +   W+   +++     PV  +V  K+D   S     + + +     
Sbjct: 126 MLLLDSR---TDSNKHYWLRHIEKYG-GKSPVI-VVMNKIDENPS---YNIEQKKINERF 177

Query: 121 SQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
              +      S ++G  VE+   ++   + +
Sbjct: 178 PAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  108 bits (273), Expect = 3e-30
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F   +          L LWDTAGQE +  +    Y +S   LL + + +R SF+
Sbjct: 54  PTVFENFSHVM--KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111

Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETS 131
           +I   W  E K +I        LVG K+DL + G   +V++ E      +   + + E S
Sbjct: 112 NISTKWEPEIKHYI-DTAKTV-LVGLKVDLRKDG-SDDVTKQEGDDLCQKLGCVAYIEAS 168

Query: 132 SRSGFQVENAFTAVTQEIYN 151
           S +   +   F      I++
Sbjct: 169 SVAKIGLNEVFEKSVDCIFS 188

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  102 bits (256), Expect = 1e-27
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV   +   L     G  + L +WDTAGQ+ +  +   +Y ++   LL +D+TS  SF+
Sbjct: 65  PTVFERYMVNL--QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122

Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
           +I   W  E         P+  +VGCK DL         L+      V+    +  A   
Sbjct: 123 NIFNRWYPEVNHFC-KKVPII-VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYN 151
             + + E S+R    V   F    +   +
Sbjct: 181 GAVAYLECSARLHDNVHAVFQEAAEVALS 209

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  100 bits (251), Expect = 3e-27
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  +F A    + +GA + L LWDTAGQE +  +    YR +   +L + + S+AS+E
Sbjct: 39  PTVFDNFSAN--VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96

Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL-------LQSGVPREVSEAEAKAFASQNDI 125
           ++   W+ E K +  P  P+  LVG KLDL       +       ++  + +        
Sbjct: 97  NVSKKWIPELKHYA-PGVPIV-LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154

Query: 126 LHF-ETSSRSGFQVENAFTAVTQEI 149
             + E SS+S   V+  F A  + +
Sbjct: 155 PAYIECSSKSQENVKGVFDAAIRVV 179

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 99.4 bits (248), Expect = 2e-26
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 15/156 (9%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++  PTV  ++ A +    DG +++L LWDTAGQE +  +    Y ++   L+ + + 
Sbjct: 50  FPEVYVPTVFENYVADI--EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVD 107

Query: 68  SRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAK 117
           S  S E+IP  W+ E K    P+ P+  LV  K DL         L       V   + +
Sbjct: 108 SPDSLENIPEKWVPEVKHFC-PNVPII-LVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165

Query: 118 AFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
           A A +     + E S+++   V   F   T+    +
Sbjct: 166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 99.0 bits (247), Expect = 3e-26
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 4   LLYLYIQIS-----DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +L  Y          PTV  D F+  V + DG  + L LWDTAGQE +  +    YR + 
Sbjct: 25  MLICYTSNKFPTDYIPTV-FDNFSANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82

Query: 59  GALLVYDITSRASFEHIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE-----VS 112
             +L + + S+AS+E++   WM E +R   P+ P+  LVG KLDL             ++
Sbjct: 83  IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIV-LVGTKLDLRDDKGYLADHTNVIT 140

Query: 113 EAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYN 151
             + +    Q     + E SS++   V+  F    + +  
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 97.5 bits (243), Expect = 8e-26
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 15/145 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  + +   + + DG +++L LWDTAGQE +  +    Y ++   L+ + I S  S E
Sbjct: 56  PTVF-ENYIADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113

Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE---------VSEAEAKAFASQ- 122
           +IP  W  E K    P+ P+  LVG K DL Q    R          V   E +  A++ 
Sbjct: 114 NIPEKWTPEVKHFC-PNVPII-LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171

Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
           +   + E S+++   V   F   T+
Sbjct: 172 SAFGYLECSAKTKEGVREVFEMATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 97.5 bits (243), Expect = 1e-25
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 15/145 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  D ++  V + DG  + L LWDTAGQE +  +    Y  +   L+ + + S ASFE
Sbjct: 61  PTV-FDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE 118

Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
           ++   W  E + H  P+ P+  LVG KLDL         L+      ++  +  A A + 
Sbjct: 119 NVRAKWYPEVRHHC-PNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176

Query: 123 NDILHFETSSRSGFQVENAFTAVTQ 147
             + + E S+ +   ++  F    +
Sbjct: 177 GAVKYLECSALTQRGLKTVFDEAIR 201

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 95.2 bits (237), Expect = 5e-25
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 4   LLYLYIQISDPTVGV----DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
           LL  Y   + P   +    D ++  V + DG  + L LWDTAGQE +  +    Y  +  
Sbjct: 21  LLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79

Query: 60  ALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPR 109
           +L+ + + S ASFE++   W  E + H  P+ P+  LVG KLDL         L+     
Sbjct: 80  SLICFSLVSPASFENVRAKWYPEVRHHC-PNTPII-LVGTKLDLRDDKDTIEKLKEKKLT 137

Query: 110 EVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQ 147
            ++  +  A A +   + + E S+ +   ++  F    +
Sbjct: 138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 94.0 bits (234), Expect = 1e-24
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 38  PTVFENYTAS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95

Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
            +   W  E +    P+  +  LVGCK DL         L +     VS  +    A Q 
Sbjct: 96  SVLKKWKGEIQEFC-PNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153

Query: 123 NDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
               + E S+      V + F   T    N+
Sbjct: 154 GAATYIECSALQSENSVRDIFHVATLACVNK 184

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+   + +
Sbjct: 59  PTVFENYTAS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116

Query: 74  HIPV-WMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
            +   W  E +    P+  +  LVGCK DL         L +     VS  +    A Q 
Sbjct: 117 SVLKKWKGEIQEFC-PNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174

Query: 123 NDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
               + E S+      V + F   T    N+
Sbjct: 175 GAATYIECSALQSENSVRDIFHVATLACVNK 205

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 91.1 bits (226), Expect = 3e-23
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y +   PTV  ++ A      +  R++L LWDT+G   + ++    Y +S   LL +DI+
Sbjct: 52  YPETYVPTVFENYTAC--LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 109

Query: 68  SRASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAK 117
              + +     W  E   +  P   V  L+GCK DL         L       +S  +  
Sbjct: 110 RPETVDSALKKWRTEILDYC-PSTRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167

Query: 118 AFASQ-NDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
           A A Q    ++ E S+ +    + + F   +    N+
Sbjct: 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 89.8 bits (223), Expect = 7e-23
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT   D F+ +V++ DG  ++LQL DTAGQ+ F  +    Y N+   LL + + S +SF+
Sbjct: 51  PTA-FDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ 108

Query: 74  HI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ- 122
           ++   W+ E + H  P  P+  LVG + DL         L     + V E  AK  A + 
Sbjct: 109 NVSEKWVPEIRCHC-PKAPII-LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYN 151
               + E S+ +   ++  F A       
Sbjct: 167 KAASYIECSALTQKNLKEVFDAAIVAGIQ 195

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 87.6 bits (217), Expect = 5e-22
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 20/155 (12%)

Query: 4   LLYLYIQIS-----DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           LL  Y   +      PTV  D +A  VT+  G +  L L+DTAGQE +  +    Y  + 
Sbjct: 34  LLMSYANDAFPEEYVPTV-FDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91

Query: 59  GALLVYDITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVP 108
             L+ + + + ASF+++   W+ E K +  P+ P   L+G ++DL         L     
Sbjct: 92  VFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFL-LIGTQIDLRDDPKTLARLNDMKE 149

Query: 109 REVSEAEAKAFASQ-NDILHFETSSRSGFQVENAF 142
           + +   + +  A +     + E S+ +   ++  F
Sbjct: 150 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 84.7 bits (209), Expect = 2e-20
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 54/191 (28%)

Query: 9   IQISDPTVGVDFF----ARLVTMRDGARIKLQLW-------DTAGQERFRSITKSYYRNS 57
                  V  D F        ++ D    K+ +        D   Q    +  + Y + +
Sbjct: 67  SDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRA 126

Query: 58  V-------------------------------------GALLVYDITS--RASFEHIPVW 78
                                                 G LL  D++     +F+    +
Sbjct: 127 AATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKF 186

Query: 79  MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQV 138
           +      +   +    +V  K D       R + +A   A + +N +   ETS+RS   V
Sbjct: 187 VSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRDAHTFALSKKN-LQVVETSARSNVNV 242

Query: 139 ENAFTAVTQEI 149
           + AF+ + Q I
Sbjct: 243 DLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 10/149 (6%)

Query: 13  DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF 72
           + T+  DF    +    G + +  L+   GQ  + +  K   R   G + V D       
Sbjct: 54  ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR 113

Query: 73  EHIPVW---MMEAKRHIEPHRPVFALVGC-KLDLLQSGVPREVSEAE-AKAFASQNDILH 127
            +             +      V  ++   K DL     P  +           +     
Sbjct: 114 ANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL-----PDALPVEMVRAVVDPEGKFPV 168

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
            E  +  G  V      V++ +  RV  G
Sbjct: 169 LEAVATEGKGVFETLKEVSRLVLARVAGG 197

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV-WMMEAKRHIE 87
           DG  + L LWDTAG E +  +    Y  +   L+ + + S ASF H+   W  E + H  
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC- 257

Query: 88  PHRPVFALVGCKLDL---------LQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQ 137
           P+ P+  LVG KLDL         L+      ++  +  A A +   + + E S+ +   
Sbjct: 258 PNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

Query: 138 VENAFTAVTQ 147
           ++  F    +
Sbjct: 317 LKTVFDEAIR 326

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT---KSYYRNSVGALLVYDITSRA 70
            T  +        + + + +  Q+WD  GQ  F   T   +  +R +   + V D     
Sbjct: 54  STNKIY----KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY 109

Query: 71  --SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL--------QSGVPREVSEAEAKAFA 120
             +   + + + +A +   P       +  K+D L        Q  + +  ++  A A  
Sbjct: 110 MEALTRLHITVSKAYKV-NPDMNFEVFIH-KVDGLSDDHKIETQRDIHQRANDDLADAGL 167

Query: 121 SQNDILHFETSSRSGFQVENAFTAVTQEI 149
            +  +  + TS      +  AF+ V Q++
Sbjct: 168 EKLHLSFYLTSIYDH-SIFEAFSKVVQKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 51.1 bits (122), Expect = 4e-08
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 17/153 (11%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITS 68
            T+ V+       +R    + L LWD  GQ+ F            ++     + V+D+ S
Sbjct: 37  ATIDVEH----SHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES 92

Query: 69  RASFEHIPVW--MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV-----SEAEAKAFAS 121
               + I ++   ++  R   P   +F L+  K+DL+Q     E+           +   
Sbjct: 93  TEVLKDIEIFAKALKQLRKYSPDAKIFVLLH-KMDLVQLDKREELFQIMMKNLSETSSEF 151

Query: 122 QNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
               L    +S     +  A++ +   +   + 
Sbjct: 152 GFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMS 184

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   I   +WD  GQ++ R + + Y++N+ G + V D   R   +
Sbjct: 59  PTIG--FNVETVEYKN---ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113

Query: 74  HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR 133
                + +  +  E    V  +   K D+  +    E+++                T + 
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCAT 173

Query: 134 SGFQVENAFTAVTQEIYNR 152
            G  + +    ++ E+  R
Sbjct: 174 QGTGLYDGLDWLSHELSKR 192

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 3   TLLY-----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
           T +       + +   PTVG  F  R +T      + ++LWD  GQ RFRS+ + Y R  
Sbjct: 37  TFVNVIASGQFNEDMIPTVG--FNMRKITKG---NVTIKLWDIGGQPRFRSMWERYCRGV 91

Query: 58  VGALLVYDITSRASFE 73
              + + D   +   E
Sbjct: 92  SAIVYMVDAADQEKIE 107

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PTVG       +  ++   I  ++WD  GQ   R   + Y+ ++   + V D T R    
Sbjct: 52  PTVG--VNLETLQYKN---ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT G  F  + V  +     KL +WD  GQ + R   +SY+ N+   + V D   R  FE
Sbjct: 46  PTQG--FNIKSVQSQG---FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F  + +  R     KL +WD  GQ+  RS  ++Y+ ++ G + V D   R   +
Sbjct: 48  PTLG--FNIKTLEHRG---FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 3   TLLY----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           T+LY      +  + PT+G  F    ++ ++   +KL +WD  GQ   R   + YY ++ 
Sbjct: 33  TILYRLQIGEVVTTKPTIG--FNVETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTA 87

Query: 59  GALLVYDITSRASFE 73
             + V D T +    
Sbjct: 88  AVIFVVDSTDKDRMS 102

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 3   TLLY----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           T+LY      +  + PT+G       + + +    +  +WD  GQE  RS   +YY N+ 
Sbjct: 31  TILYQFSMNEVVHTSPTIG--SNVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTE 85

Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHI------EPHRPVFALVGC-KLDLLQSGVPREV 111
             ++V D T R             +  +      E  R    L+   K D+ +     E+
Sbjct: 86  FVIVVVDSTDRERIS-------VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEI 138

Query: 112 SEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
           S+         +        + +G  +      +   +  R++ 
Sbjct: 139 SQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEH 182

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
          PT+G  F    V  ++   I   +WD  GQ++ R + + Y++N+ G + V D   R    
Sbjct: 30 PTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 3  TLLYL-----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
          T+LY       +    PT+G  F    VT ++   +K Q+WD  G    R   + YY N+
Sbjct: 22 TILYRLQVGEVVTTI-PTIG--FNVETVTYKN---LKFQVWDLGGLTSIRPYWRCYYSNT 75

Query: 58 VGALLVYDITSRASFE 73
             + V D   R    
Sbjct: 76 DAVIYVVDSCDRDRIG 91

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 3   TLLY-------LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR 55
           T++            I  PT+G  F            +   ++D +GQ R+R++ + YY+
Sbjct: 36  TIINKLKPSNAQSQNIL-PTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYK 89

Query: 56  NSVGALLVYDITSRASFE 73
                + V D + R    
Sbjct: 90  EGQAIIFVIDSSDRLRMV 107

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 3   TLLY----LYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           T+LY      +  + PT+G       + + +    +  +WD  GQE  RS   +YY N+ 
Sbjct: 36  TILYQFSMNEVVHTSPTIG--SNVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTE 90

Query: 59  GALLVYDITSRASFE 73
             ++V D T R    
Sbjct: 91  FVIVVVDSTDRERIS 105

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 3   TLLYL-----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNS 57
           TLL++        +  PT      +  + +     IK   +D  G  + R + K Y+   
Sbjct: 38  TLLHMLKNDRLATLQ-PTWH--PTSEELAIG---NIKFTTFDLGGHIQARRLWKDYFPEV 91

Query: 58  VGALLVYDITSRASFE 73
            G + + D      F+
Sbjct: 92  NGIVFLVDAADPERFD 107

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 3   TLLYL----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           TLL++     +    PT+     +  +T+     +    +D  G  + R + K+Y     
Sbjct: 40  TLLHMLKDDRLGQHVPTLH--PTSEELTIA---GMTFTTFDLGGHIQARRVWKNYLPAIN 94

Query: 59  GALLVYDITSRASFE 73
           G + + D        
Sbjct: 95  GIVFLVDCADHERLL 109

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 14  PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFE 73
           PT+G  F    V  ++   I   +WD  GQ++ R + + Y++N+ G + V D   R    
Sbjct: 195 PTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 249

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 22/126 (17%)

Query: 3   TLLYL-----YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRN 56
            L        Y      ++     + +  + +     L L D  G E  R  +   +  +
Sbjct: 22  LLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS 78

Query: 57  SVGALLVYDITSR-------ASFEHIPVWMMEAKRHIEPHRPVFALVGC-KLDLLQSGVP 108
           +   + V D  +        A F +    ++     ++    +  L+ C K D+  +   
Sbjct: 79  ARAVVFVVDSAAFQREVKDVAEFLYQ---VLIDSMALKNSPSL--LIACNKQDIAMAKSA 133

Query: 109 REVSEA 114
           + + + 
Sbjct: 134 KLIQQQ 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.94
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.94
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.94
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.94
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.94
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.94
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.94
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.94
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.94
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.94
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.94
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.93
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.93
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.93
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.92
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.92
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.92
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.92
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.92
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.91
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.91
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.91
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.9
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.9
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.9
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.9
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.9
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.9
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.89
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.88
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.87
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.85
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.85
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.82
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.81
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.79
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.79
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.76
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.76
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.76
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.75
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.73
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.71
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.7
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.69
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.68
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.68
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.68
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.67
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.65
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.65
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.64
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.64
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.61
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.6
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.59
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.57
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.57
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.56
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.55
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.54
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.53
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.52
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.52
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.51
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.5
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.49
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.47
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.46
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.46
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.45
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.43
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.43
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.43
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.42
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.42
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.41
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.41
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.41
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.41
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.4
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.4
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.39
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.38
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.38
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.38
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.37
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.36
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.3
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.29
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.26
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.22
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.21
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.18
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.18
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.16
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.14
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.07
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.07
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.03
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.98
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.98
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.97
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.96
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.93
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.88
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.88
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.88
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.84
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.82
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.78
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.73
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.63
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.59
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.57
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.49
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.45
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.42
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.42
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.25
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.1
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.08
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.06
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.84
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.24
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.02
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.02
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.82
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.13
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	93.07
3cwq_A	209	Para family chromosome partitioning protein; alpha	91.29
3end_A	307	Light-independent protochlorophyllide reductase ir	89.84
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	88.66
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	85.19
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	84.95
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	82.97
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	80.02

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.8e-37  Score=230.57  Aligned_cols=146  Identities=34%  Similarity=0.605  Sum_probs=124.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||+|.++..+.+.+ ++..+.++||||+|+++|..+++.|+++++++++|||+++++||+.+.
T Consensus        27 TsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~  105 (216)
T 4dkx_A           27 TSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT  105 (216)
T ss_dssp             HHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHH
Confidence            4788887     6789999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+..... .++|++|||||+|+.+   .+.++.+++.++++++++.|++|||++|.||+++|.+|++.+...
T Consensus       106 ~~~~~i~~~~~-~~~piilVgNK~Dl~~---~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          106 KWIDDVRTERG-SDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             HHHHHHHHHHT-TSSEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhcC-CCCeEEEEeeccchHh---cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence            99999988764 4689999999999977   578999999999999999999999999999999999999987654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.6e-30  Score=192.72  Aligned_cols=153  Identities=40%  Similarity=0.684  Sum_probs=124.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+|+.+..
T Consensus        28 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~  106 (223)
T 3cpj_B           28 NLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH  106 (223)
T ss_dssp             HHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHH
Confidence            577777     4578899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++..++...+++++++||+++.||+++|.+|++.+.+.....+
T Consensus       107 ~l~~i~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          107 WLSELRENA-DDNVAVGLIGNKSDLAH---LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHC-C--CEEEEEECCGGGGG---GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC----
T ss_pred             HHHHHHHhC-CCCCeEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            999998764 45689999999999975   35678888999999999999999999999999999999999988776665


Q ss_pred             ccc
Q psy38           158 YKV  160 (193)
Q Consensus       158 ~~~  160 (193)
                      ...
T Consensus       183 ~~~  185 (223)
T 3cpj_B          183 MDL  185 (223)
T ss_dssp             ---
T ss_pred             cCc
Confidence            554

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=4.7e-29  Score=184.76  Aligned_cols=148  Identities=41%  Similarity=0.643  Sum_probs=133.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~  101 (206)
T 2bcg_Y           23 CLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM  101 (206)
T ss_dssp             HHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHH
Confidence            677776     5678899999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++..++...+++++++||++|.||+++|.+|.+.+.+....
T Consensus       102 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  175 (206)
T 2bcg_Y          102 WLQEIDRYA-TSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ  175 (206)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence            999998765 44689999999999976   366788899999999999999999999999999999999999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=4.5e-28  Score=177.71  Aligned_cols=158  Identities=39%  Similarity=0.600  Sum_probs=133.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus        31 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  109 (196)
T 3tkl_A           31 CLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ  109 (196)
T ss_dssp             HHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHH
Confidence            567776     5678899999999999999 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+...++..++...+++++++||++|.|++++|.+|++.+........
T Consensus       110 ~~~~i~~~~-~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          110 WLQEIDRYA-SENVNKLLVGNKCDLTT---KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA  185 (196)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHhc-CCCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            999998875 45689999999999976   47788899999999999999999999999999999999999998876655


Q ss_pred             ccccCCcc
Q psy38           158 YKVEDGWE  165 (193)
Q Consensus       158 ~~~~~~~~  165 (193)
                      ......++
T Consensus       186 ~~~~~~~s  193 (196)
T 3tkl_A          186 TAGGAEKS  193 (196)
T ss_dssp             --------
T ss_pred             ccCCCccC
Confidence            44433333

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=182.03  Aligned_cols=146  Identities=32%  Similarity=0.459  Sum_probs=129.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...|.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|..+..
T Consensus        29 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~  106 (206)
T 2bov_A           29 ALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD  106 (206)
T ss_dssp             HHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence            566776     567889987544 566677 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.+|++.+....
T Consensus       107 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          107 FREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHTTCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCccc---cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence            999999886656789999999999976   3568888999999999999999999999999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=1.9e-28  Score=177.99  Aligned_cols=150  Identities=38%  Similarity=0.668  Sum_probs=114.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus        22 ssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  100 (183)
T 2fu5_C           22 TCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR  100 (183)
T ss_dssp             --------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence            4788888     4567899999999888988 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.... ....|+++|+||+|+.+   .+.+..+++.+++...+++++++||++|.||+++|.+|++.+.++..+.
T Consensus       101 ~~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~  176 (183)
T 2fu5_C          101 NWIRNIEEHA-SADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEEC--CCS---CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCCEEEEEECccCCc---cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            9999998764 34689999999999976   3668889999999999999999999999999999999999998876544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=7.8e-28  Score=177.89  Aligned_cols=146  Identities=44%  Similarity=0.698  Sum_probs=123.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        44 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~  122 (201)
T 2hup_A           44 CVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH  122 (201)
T ss_dssp             HHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHH
T ss_pred             HHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence            567777     4678899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++...++ +++++||++|.||+++|.+|++.+.+..
T Consensus       123 ~~~~i~~~~-~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          123 WIEDVRKYA-GSNIVQLLIGNKSDLSE---LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCCCEEEEEECCcccc---ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999998875 45689999999999976   356888999999999999 9999999999999999999999988754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.1e-27  Score=177.28  Aligned_cols=149  Identities=38%  Similarity=0.672  Sum_probs=132.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~  119 (201)
T 2ew1_A           41 CLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE  119 (201)
T ss_dssp             HHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            567776     5678899999999999999 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      |+..+.... ....|+++|+||+|+.+   .+.+..+++..++...+++++++||++|.||+++|.++++.+.+.....
T Consensus       120 ~~~~i~~~~-~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~  194 (201)
T 2ew1_A          120 WLREIEQYA-SNKVITVLVGNKIDLAE---RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN  194 (201)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            999998764 45689999999999965   3668888899999989999999999999999999999999998866443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=1.2e-27  Score=177.00  Aligned_cols=147  Identities=33%  Similarity=0.602  Sum_probs=129.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|..+..
T Consensus        23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  101 (207)
T 1vg8_A           23 SLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS  101 (207)
T ss_dssp             HHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHH
Confidence            567776     5678899999999999988 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC---CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEP---HRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+......   ...|+++|+||+|+..    +.+..+++..++. ..+++++++||++|.|++++|.+|++.+.+..
T Consensus       102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          102 WRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHCCSSGGGSCEEEEEECTTSSC----CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCCCCcEEEEEECCCCcc----cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999876532   3679999999999974    4567788888887 67789999999999999999999999998765


Q ss_pred             c
Q psy38           154 Q  154 (193)
Q Consensus       154 ~  154 (193)
                      .
T Consensus       178 ~  178 (207)
T 1vg8_A          178 T  178 (207)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=2.3e-27  Score=173.74  Aligned_cols=150  Identities=47%  Similarity=0.831  Sum_probs=129.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+.
T Consensus        35 Ssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  113 (191)
T 2a5j_A           35 SCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT  113 (191)
T ss_dssp             HHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence            3677777     4567889998999999998 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.... ....|+++|+||+|+.+   .+.+..+++..++...+++++++||+++.||+++|.+|++.+.++...+
T Consensus       114 ~~l~~i~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  189 (191)
T 2a5j_A          114 SWLEDARQHS-SSNMVIMLIGNKSDLES---RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  189 (191)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhc-CCCCCEEEEEECcccCC---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999998764 45689999999999965   3568888999999999999999999999999999999999998876544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.95  E-value=2.4e-27  Score=171.86  Aligned_cols=146  Identities=30%  Similarity=0.398  Sum_probs=128.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++++|||++++++|+.+..
T Consensus        21 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   98 (181)
T 3t5g_A           21 SLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV   98 (181)
T ss_dssp             HHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            566666     678899998666 677778 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.++++.+....
T Consensus        99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A           99 IHGKLLDMVGKVQIPIMLVGNKKDLHM---ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHC----CCEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhcCCCCCCEEEEEECccchh---cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            999998876666789999999999976   4778999999999999999999999999999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=4.4e-27  Score=171.08  Aligned_cols=151  Identities=44%  Similarity=0.740  Sum_probs=134.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        25 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  103 (186)
T 2bme_A           25 CLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN  103 (186)
T ss_dssp             HHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence            567776     5678899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+...++.+++...+++++++||++|.|++++|.++++.+.+.....+
T Consensus       104 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          104 WLTDARMLA-SQNIVIILCGNKKDLDA---DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcC
Confidence            999988764 35689999999999965   35678888999999999999999999999999999999999998876664


Q ss_pred             c
Q psy38           158 Y  158 (193)
Q Consensus       158 ~  158 (193)
                      .
T Consensus       180 ~  180 (186)
T 2bme_A          180 L  180 (186)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=3.1e-27  Score=172.07  Aligned_cols=147  Identities=31%  Similarity=0.465  Sum_probs=127.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++ +.....+.+ ++..+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..
T Consensus        19 sli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   96 (189)
T 4dsu_A           19 ALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH   96 (189)
T ss_dssp             HHHHHHHHSSCCCCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCCch-heEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            566776     567888885 666677777 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      |+..+.........|+++|+||+|+..    +.+..+.+..++...+++++++||++|.|++++|.++++.+......
T Consensus        97 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A           97 YREQIKRVKDSEDVPMVLVGNKCDLPS----RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHTTCSCCCEEEEEECTTSSS----CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEEECccCcc----cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            999999877667789999999999975    56788889999999999999999999999999999999999876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=174.56  Aligned_cols=146  Identities=24%  Similarity=0.316  Sum_probs=127.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||+++|     ...+.|+++.++....+.+ ++..+.+.+|||+|++.+.. ++..+++++|++|+|||++++.+|..+
T Consensus        37 SsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~  115 (195)
T 3cbq_A           37 STLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV  115 (195)
T ss_dssp             HHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH
T ss_pred             HHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHH
Confidence            3677887     2235577777888888888 99999999999999988765 778899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..|+..+.........|+++||||+|+..   .+.++.+++.+++...+++++++||++|.||+++|.++++.+..
T Consensus       116 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          116 PETLLRLRAGRPHHDLPVILVGNKSDLAR---SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHSTTSCCCEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeechhccc---cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            99999998875445789999999999976   46688889999999999999999999999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.95  E-value=5.4e-27  Score=170.29  Aligned_cols=144  Identities=29%  Similarity=0.468  Sum_probs=129.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus        33 sl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  110 (183)
T 3kkq_A           33 ALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR  110 (183)
T ss_dssp             HHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            566776     668889998666 677777 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCC-CCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSR-SGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+.+   .+.+..+++.+++...+++++++||+ ++.|++++|.+|.+.+.+
T Consensus       111 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          111 FHQLILRVKDRESFPMILVANKVDLMH---LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHTSSCCCEEEEEECTTCST---TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEEECCCchh---ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            999998876667789999999999976   47789999999999999999999999 999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=3.3e-27  Score=174.36  Aligned_cols=151  Identities=46%  Similarity=0.746  Sum_probs=128.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  118 (200)
T 2o52_A           40 CLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA  118 (200)
T ss_dssp             HHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            567776     5678899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD  157 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~~  157 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+...++..++...+++++++||++|.||+++|.+|++.+.++....+
T Consensus       119 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          119 WLTDARTLA-SPNIVVILCGNKKDLDP---EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE  194 (200)
T ss_dssp             HHHHHHHHT-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhc-CCCCcEEEEEECCCccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            999998765 35689999999999965   35678888999999999999999999999999999999999998876664


Q ss_pred             c
Q psy38           158 Y  158 (193)
Q Consensus       158 ~  158 (193)
                      .
T Consensus       195 ~  195 (200)
T 2o52_A          195 L  195 (200)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=1.2e-26  Score=169.61  Aligned_cols=147  Identities=35%  Similarity=0.601  Sum_probs=131.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.. ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        37 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  115 (189)
T 2gf9_A           37 SFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD  115 (189)
T ss_dssp             HHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence            567776     4678899999998888888 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.+|++.+.++.+
T Consensus       116 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          116 WATQIKTYS-WDNAQVILVGNKCDLED---ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCCCEEEEEECccccc---ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            999998764 45689999999999966   36678888999999999999999999999999999999999887653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.5e-27  Score=176.72  Aligned_cols=148  Identities=27%  Similarity=0.335  Sum_probs=123.5

Q ss_pred             eeeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-cccchhhhccCccEEEEEEeCCChhHHhh
Q psy38             2 VTLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-FRSITKSYYRNSVGALLVYDITSRASFEH   74 (193)
Q Consensus         2 ~sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~   74 (193)
                      +||++||.      ....+++|.++..+.+.+ +|..+.+.+|||+|++. +..+...+++.++++|+|||++++.+|+.
T Consensus        51 SSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~  129 (211)
T 2g3y_A           51 STLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEK  129 (211)
T ss_dssp             HHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence            36788882      123355778888888888 99999999999999877 55567888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +..|+..+.........|++|||||+||..   .+.+..+++..++...++++++|||++|.||+++|.++++.+....
T Consensus       130 ~~~~~~~l~~~~~~~~~piilVgNK~DL~~---~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          130 ASELRIQLRRARQTEDIPIILVGNKSDLVR---CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHTSGGGTTSCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEEChHHhc---CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999998887643344689999999999965   3668888888899889999999999999999999999999886544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-26  Score=171.27  Aligned_cols=149  Identities=34%  Similarity=0.586  Sum_probs=133.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  101 (203)
T 1zbd_A           23 SFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD  101 (203)
T ss_dssp             HHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHH
Confidence            677777     4678899999999888888 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.+|++.+.++....
T Consensus       102 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          102 WSTQIKTYS-WDNAQVLLVGNKCDMED---ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHS-CSSCEEEEEEECTTCTT---SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCCCEEEEEECcccCc---ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999998764 45689999999999976   4667888999999999999999999999999999999999998876554

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=1e-26  Score=166.43  Aligned_cols=145  Identities=36%  Similarity=0.628  Sum_probs=123.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   96 (170)
T 1g16_A           18 CLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ   96 (170)
T ss_dssp             HHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            567776     4678899999999899988 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.... ....|+++|+||+|+..    +.+..+++.++++..+++++++||++|.|++++|.++.+.+.++.
T Consensus        97 ~~~~i~~~~-~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  167 (170)
T 1g16_A           97 WFKTVNEHA-NDEAQLLLVGNKSDMET----RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI  167 (170)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCTT----CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccCCc----CccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            999998875 34689999999999943    567888899999999999999999999999999999999887653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=167.58  Aligned_cols=148  Identities=39%  Similarity=0.623  Sum_probs=132.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..
T Consensus        24 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  102 (181)
T 3tw8_B           24 SLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR  102 (181)
T ss_dssp             HHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            567776     5578899999999999999 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      |+..+....  ...|+++|+||+|+..   .+.+...++..++...+++++++||++|.|++++|.++.+.+.......
T Consensus       103 ~~~~~~~~~--~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          103 WLHEINQNC--DDVCRILVGNKNDDPE---RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHC--TTSEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCEEEEEECCCCch---hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            999998764  3689999999999876   4668888999999999999999999999999999999999998876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=1.3e-26  Score=167.43  Aligned_cols=147  Identities=29%  Similarity=0.491  Sum_probs=129.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++. ..+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.++..+..
T Consensus        24 sli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  101 (181)
T 2fn4_A           24 ALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK  101 (181)
T ss_dssp             HHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHH
Confidence            566776     5678899986665 66777 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+..+.........|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.+|.+.+.+...
T Consensus       102 ~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          102 LFTQILRVKDRDDFPVVLVGNKADLES---QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHTSSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            999997766566789999999999976   36688889999999999999999999999999999999999876543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.4e-26  Score=167.42  Aligned_cols=144  Identities=39%  Similarity=0.709  Sum_probs=121.8

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|      ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+.
T Consensus        25 sli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  103 (180)
T 2g6b_A           25 CLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ  103 (180)
T ss_dssp             HHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence            567776      3467899999999888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+..... ...|+++|+||+|+..   .+.+..+++..++...+++++++||+++.|++++|.++.+.+.+
T Consensus       104 ~~~~~i~~~~~-~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          104 AWLTEIHEYAQ-HDVALMLLGNKVDSAH---ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HHHHHHHHHSC-TTCEEEEEEECCSTTS---CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCC-CCCcEEEEEECcccCc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999988753 5689999999999976   46678888999999999999999999999999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=6.6e-27  Score=167.56  Aligned_cols=144  Identities=34%  Similarity=0.639  Sum_probs=122.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus        21 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   99 (170)
T 1z08_A           21 SLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN   99 (170)
T ss_dssp             HHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            567666     4678899999999889988 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.... ....|+++|+||+|+.+   .+.+..+++.+++...+++++++||++|.|++++|.++++.+.+
T Consensus       100 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          100 WVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHH-GGGSEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhc-CCCCeEEEEEECccccc---ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence            999988764 34589999999999976   35678889999999999999999999999999999999988753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=167.37  Aligned_cols=149  Identities=28%  Similarity=0.343  Sum_probs=119.8

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc--cccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER--FRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||+++|    .....++.|.++....+.+ ++..+.+.+|||+|++.  +..+...+++.+|++++|||++++.+|+.+
T Consensus        18 Ssl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~   96 (175)
T 2nzj_A           18 TSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA   96 (175)
T ss_dssp             HHHHHHHHCC-----CCCSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHH
T ss_pred             HHHHHHHhcCCCccccCccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHH
Confidence            3677777    2233466778888888888 88899999999999987  566778899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ..|+..+.........|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.+|++.+.....
T Consensus        97 ~~~~~~l~~~~~~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A           97 SELRIQLRRTHQADHVPIILVGNKADLAR---CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHCC----CCEEEEEECTTCTT---TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhccCCCCEEEEEEChhhcc---ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999988764445689999999999976   46678888889998899999999999999999999999999876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=1.2e-26  Score=167.45  Aligned_cols=144  Identities=44%  Similarity=0.798  Sum_probs=129.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus        30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  108 (179)
T 1z0f_A           30 CLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS  108 (179)
T ss_dssp             HHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHH
Confidence            567776     5678899999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.++++.+.+
T Consensus       109 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          109 WLTDARNLT-NPNTVIILIGNKADLEA---QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            999998775 34689999999999965   35678889999999999999999999999999999999988754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.8e-26  Score=168.87  Aligned_cols=146  Identities=38%  Similarity=0.626  Sum_probs=131.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..
T Consensus        30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  108 (195)
T 1x3s_A           30 SLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN  108 (195)
T ss_dssp             HHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            567776     5678899999999999988 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+..    +.+..+++.+++...+++++++||+++.|++++|.+|.+.+.+..
T Consensus       109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          109 WLNELETYCTRNDIVNMLVGNKIDKEN----REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             HHHHHTTCCSCSCCEEEEEEECTTSSS----CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHhcCcCCCcEEEEEECCcCcc----cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence            999998765556789999999999954    567888899999999999999999999999999999999987643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=8.4e-27  Score=166.99  Aligned_cols=146  Identities=24%  Similarity=0.313  Sum_probs=117.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|     ...+.++.+.++....+.+ ++..+.+.+|||+|++.+.. ++..+++++|++++|||++++++|+.+.
T Consensus        17 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   95 (169)
T 3q85_A           17 TLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP   95 (169)
T ss_dssp             HHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHH
Confidence            567776     3344555567888888888 99999999999999998876 7788899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+.......+.|+++|+||+|+.+   .+.+..+++..++...+++++++||++|.|++++|.++++.+..+
T Consensus        96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A           96 ETLLRLRAGRPHHDLPVILVGNKSDLAR---SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHSTTSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccCCCCCEEEEeeCcchhh---cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            9999999886656789999999999976   477899999999999999999999999999999999999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=5.9e-27  Score=174.88  Aligned_cols=148  Identities=22%  Similarity=0.365  Sum_probs=125.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh-HH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH-IP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~   76 (193)
                      ||+++|     ...|.||++.++ ...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+. +.
T Consensus        42 sL~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  119 (214)
T 3q3j_B           42 AMLQVLAKDCYPETYVPTVFENY-TACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK  119 (214)
T ss_dssp             HHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHT
T ss_pred             HHHHHHhcCCCCCCcCCeeeeeE-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHH
Confidence            677777     667899998665 566677 8889999999999999999999999999999999999999999999 68


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTAV  145 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~i  145 (193)
                      .|+..+....  ...|+++||||+|+.++         ...+.+..+++.+++...++ +|++|||++|.| |+++|.++
T Consensus       120 ~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l  197 (214)
T 3q3j_B          120 KWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA  197 (214)
T ss_dssp             HHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence            8999998874  46899999999999642         11256889999999999999 999999999998 99999999


Q ss_pred             HHHHHHHhc
Q psy38           146 TQEIYNRVQ  154 (193)
Q Consensus       146 ~~~i~~~~~  154 (193)
                      ++.+.....
T Consensus       198 ~~~~~~~~~  206 (214)
T 3q3j_B          198 SMLCLNKPS  206 (214)
T ss_dssp             HHHHHC---
T ss_pred             HHHHhccCc
Confidence            999886544

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=1.7e-26  Score=168.70  Aligned_cols=150  Identities=38%  Similarity=0.628  Sum_probs=132.2

Q ss_pred             eeeeec-----cCCCCCcceeeEE-EEEEEecCCc---------EEEEEEeeCCCccccccchhhhccCccEEEEEEeCC
Q psy38             3 TLLYLY-----IQISDPTVGVDFF-ARLVTMRDGA---------RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~-~~~~~~~~~~---------~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   67 (193)
                      ||+++|     ...+.||++.++. ...+.+ ++.         .+.+.+|||+|++++..++..+++++|++|+|||++
T Consensus        26 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~  104 (195)
T 3bc1_A           26 SVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT  104 (195)
T ss_dssp             HHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETT
T ss_pred             HHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence            567776     5678899998888 677777 665         789999999999999999999999999999999999


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ++.++..+..|+..+.........|+++|+||+|+..   .+.+..+++.+++...+++++++||+++.|++++|.+|.+
T Consensus       105 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  181 (195)
T 3bc1_A          105 NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED---QRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD  181 (195)
T ss_dssp             CHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc---ccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999999876546789999999999965   3567888899999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q psy38           148 EIYNRVQSG  156 (193)
Q Consensus       148 ~i~~~~~~~  156 (193)
                      .+.+.....
T Consensus       182 ~~~~~~~~~  190 (195)
T 3bc1_A          182 LIMKRMERS  190 (195)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHhhhc
Confidence            998876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=2.1e-27  Score=171.47  Aligned_cols=147  Identities=32%  Similarity=0.500  Sum_probs=126.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||+|.++....+.+.++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+.
T Consensus        20 ssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   99 (178)
T 2hxs_A           20 TSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE   99 (178)
T ss_dssp             HHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHH
Confidence            3677777     34677999989999999983336899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.....  ...+|+++|+||+|+.+   .+.+..+++.+++...+++++++||++|.||+++|.+|++.+.+
T Consensus       100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          100 DWYTVVKKVSEESETQPLVALVGNKIDLEH---MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccCCCCeEEEEEEcccccc---ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999887532  23456889999999966   35678889999999999999999999999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=1.8e-26  Score=166.98  Aligned_cols=145  Identities=32%  Similarity=0.663  Sum_probs=128.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        27 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  105 (181)
T 2efe_B           27 SLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK  105 (181)
T ss_dssp             HHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            566776     5567899999999999988 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.+|++.+...
T Consensus       106 ~~~~~~~~~-~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          106 WVQELQAQG-NPNMVMALAGNKSDLLD---ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             HHHHHHHhc-CCCCcEEEEEECCcccc---cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            999998875 34689999999999976   466788899999999999999999999999999999999876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=2.5e-26  Score=168.31  Aligned_cols=147  Identities=44%  Similarity=0.682  Sum_probs=131.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|..+..
T Consensus        40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~  118 (193)
T 2oil_A           40 NLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER  118 (193)
T ss_dssp             HHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            677777     5578899999999898888 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.+|.+.+.++..
T Consensus       119 ~l~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          119 WLKELYDHA-EATIVVMLVGNKSDLSQ---AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHTTS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-CCCCeEEEEEECCCccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999998754 45689999999999966   35678889999999999999999999999999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=1.6e-26  Score=165.04  Aligned_cols=145  Identities=26%  Similarity=0.334  Sum_probs=105.8

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.++.|..+ ...+.+ ++..+.+.+||++|++.+..++..+++++|++++|||++++++|+.+..|
T Consensus        17 sli~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~   94 (166)
T 3q72_A           17 ALARIFGGVEDGPEAEAAGHTY-DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL   94 (166)
T ss_dssp             HHHHHHCCC----------CEE-EEEEEE-TTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHH
T ss_pred             HHHHHHcCccccCCCCccccce-EEEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHH
Confidence            577777    335566776544 566677 88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +..+.........|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.++.+.+..+
T Consensus        95 ~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A           95 RVQLRRARQTDDVPIILVGNKSDLVR---SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHCC---CCCEEEEEECTTCCS---SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEecccccc---ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            99998865556789999999999976   477889999999999999999999999999999999999988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=1.2e-26  Score=169.58  Aligned_cols=144  Identities=42%  Similarity=0.687  Sum_probs=127.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-cchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++. .++..+++++|++|+|||++++.+|+.+.
T Consensus        35 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~  113 (189)
T 1z06_A           35 CLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP  113 (189)
T ss_dssp             HHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence            677777     5678899999999999998 8888999999999999998 88999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCC---cCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSG---FQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~e~f~~i~~~i~  150 (193)
                      .|+..+.........|+++|+||+|+..   .+.+..+++..++...+++++++||+++   .||+++|.+|++.+.
T Consensus       114 ~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          114 AWIEECKQHLLANDIPRILVGNKCDLRS---AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHHHCCCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccccc---cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            9999999886566789999999999966   3567888999999999999999999999   999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=5e-27  Score=173.33  Aligned_cols=148  Identities=32%  Similarity=0.390  Sum_probs=123.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus        39 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  116 (201)
T 3oes_A           39 SLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES  116 (201)
T ss_dssp             HHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHH
Confidence            567776     667889998666 666666 7888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      |+..+.........|+++|+||+|+..   .+.+...++..++...+++++++||++|.||+++|.+|++.+.+....
T Consensus       117 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          117 LYQKLHEGHGKTRVPVVLVGNKADLSP---EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHC-----CCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhcCCCCCCEEEEEECccCcc---ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            999998876566789999999999976   467888999999999999999999999999999999999998875544

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.4e-27  Score=173.61  Aligned_cols=147  Identities=35%  Similarity=0.598  Sum_probs=132.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus        38 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  116 (191)
T 3dz8_A           38 SFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD  116 (191)
T ss_dssp             HHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHH
Confidence            677777     4677889998999999988 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+..+.... ....|+++|+||+|+.+   .+.+..+++..++...+++++++||++|.||+++|.+|++.+.++..
T Consensus       117 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          117 WATQIKTYS-WDNAQVILVGNKCDMEE---ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            999998864 45789999999999976   46788899999999999999999999999999999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=1.6e-26  Score=165.32  Aligned_cols=145  Identities=37%  Similarity=0.690  Sum_probs=129.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   96 (170)
T 1ek0_A           18 SIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH   96 (170)
T ss_dssp             HHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHH
Confidence            567666     5578899999999899998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.... ....|+++|+||+|+......+.+..+++.+++...+++++++||++|.|++++|.++.+.+
T Consensus        97 ~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A           97 WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999998875 45689999999999976433367888899999999999999999999999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=170.06  Aligned_cols=145  Identities=38%  Similarity=0.699  Sum_probs=125.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus        41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~  119 (192)
T 2il1_A           41 SLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK  119 (192)
T ss_dssp             HHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence            677777     4567899999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++... +++++++||++|.||+++|.+|++.+.++
T Consensus       120 ~~~~i~~~~-~~~~piilV~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          120 WMKMIDKYA-SEDAELLLVGNKLDCET---DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999887764 45689999999999976   3667888888999884 78999999999999999999999988753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.94  E-value=6.7e-27  Score=170.95  Aligned_cols=143  Identities=27%  Similarity=0.350  Sum_probs=121.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...|.||++.++ ...+.+ ++..+.+++|||+|++++..+ ..+++++|++|+|||++++++|+.+.
T Consensus        35 TsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~  111 (187)
T 3c5c_A           35 SALTVKFLTKRFISEYDPNLEDTY-SSEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSS  111 (187)
T ss_dssp             HHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCCCcccee-eEEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHH
Confidence            3677776     567899998665 456677 888999999999999998875 67999999999999999999999999


Q ss_pred             HHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecC-CCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSS-RSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+.....  ....|+++|+||+|+..   .+.+..+++.++++..++++++||| ++|.||+++|.++++.+.
T Consensus       112 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          112 SYLELLALHAKETQRSIPALLLGNKLDMAQ---YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCCCEEEEEECcchhh---cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            99999987642  24689999999999966   4668889999999999999999999 899999999999998875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.94  E-value=1.3e-26  Score=165.63  Aligned_cols=143  Identities=32%  Similarity=0.569  Sum_probs=128.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..
T Consensus        20 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   98 (168)
T 1z2a_A           20 SMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS   98 (168)
T ss_dssp             HHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence            566666     5678999999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+....  ...|+++|+||+|+.+   .+.+..+++.+++...+++++++||+++.|++++|.++.+.+.+
T Consensus        99 ~~~~i~~~~--~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A           99 WREKVVAEV--GDIPTALVQNKIDLLD---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHH--CSCCEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC--CCCCEEEEEECcccCc---ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            999998875  4578999999999975   35678888999999999999999999999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.94  E-value=2.3e-26  Score=167.83  Aligned_cols=142  Identities=20%  Similarity=0.362  Sum_probs=121.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||.+ ++ ...+.+ ++..+.+++|||+|++.+.     +++++|++++|||++++.+|+.+..
T Consensus        35 sL~~~~~~~~~~~~~~~t~~-~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~  106 (184)
T 3ihw_A           35 ALVHRYLTGTYVQEESPEGG-RF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYN  106 (184)
T ss_dssp             HHHHHHHHSSCCCCCCTTCE-EE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCcCCCcc-eE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHH
Confidence            677777     456888853 44 477888 9999999999999998876     8889999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+... ..+.+..+++.+++...+ +.|++|||++|.||+++|.++++.+.+..
T Consensus       107 ~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          107 YFLRLCSFRNASEVPMVLVGTQDAISAA-NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHTTSCGGGSCEEEEEECTTCBTT-BCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCCEEEEEECcccccc-cccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999988754456899999999999421 146788999999999987 89999999999999999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=3e-27  Score=176.38  Aligned_cols=150  Identities=39%  Similarity=0.643  Sum_probs=130.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCc----------EEEEEEeeCCCccccccchhhhccCccEEEEEEeCC
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGA----------RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~----------~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   67 (193)
                      ||+++|     ...+.||++.++....+.+ ++.          .+.+.||||+|++++..++..+++++|++|+|||++
T Consensus        40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~  118 (217)
T 2f7s_A           40 TFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT  118 (217)
T ss_dssp             HHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             HHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECc
Confidence            567776     4567889998998888888 665          789999999999999999999999999999999999


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ++.+++.+..|+..+.........|+++|+||+|+..   .+.+..+++.+++...+++++++||+++.||+++|.+|++
T Consensus       119 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  195 (217)
T 2f7s_A          119 SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD  195 (217)
T ss_dssp             CHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc---ccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999998887654436789999999999966   3567888999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q psy38           148 EIYNRVQSG  156 (193)
Q Consensus       148 ~i~~~~~~~  156 (193)
                      .+.++....
T Consensus       196 ~i~~~~~~~  204 (217)
T 2f7s_A          196 LIMKRMEQC  204 (217)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhcC
Confidence            998876543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=4e-27  Score=175.08  Aligned_cols=147  Identities=29%  Similarity=0.424  Sum_probs=121.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...|.||++..+ ...+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|||++++++|+.+. 
T Consensus        24 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~  101 (212)
T 2j0v_A           24 CMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLK  101 (212)
T ss_dssp             HHHHHHHHSCCCSSCCCSSCCCE-EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCccCCCccceeE-EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence            567776     567889998554 556677 888999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-----CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG-----VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+....  ...|+++|+||+|+....     ....+..+++.+++...++ +++++||++|.||+++|.++++.+.
T Consensus       102 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          102 KWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             THHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence            7999988764  368999999999986520     0113578888999999886 9999999999999999999999887


Q ss_pred             HHh
Q psy38           151 NRV  153 (193)
Q Consensus       151 ~~~  153 (193)
                      +..
T Consensus       180 ~~~  182 (212)
T 2j0v_A          180 QPP  182 (212)
T ss_dssp             CC-
T ss_pred             hhh
Confidence            643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.94  E-value=3.3e-26  Score=163.68  Aligned_cols=142  Identities=35%  Similarity=0.671  Sum_probs=126.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+||++|++++..++..+++++|++|+|||++++.+++.+..
T Consensus        21 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   99 (170)
T 1r2q_A           21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN   99 (170)
T ss_dssp             HHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence            567776     4568899999998888888 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.+|.+.+
T Consensus       100 ~~~~~~~~~-~~~~~iilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          100 WVKELQRQA-SPNIVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccCcc---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999998875 34689999999999965   356788889999999999999999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.94  E-value=5.3e-26  Score=163.96  Aligned_cols=144  Identities=33%  Similarity=0.565  Sum_probs=124.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..
T Consensus        22 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~  100 (177)
T 1wms_A           22 SLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN  100 (177)
T ss_dssp             HHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence            567776     5678899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC---CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEP---HRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+......   ...|+++|+||+|+..    +.+..+++.+++. ..+++++++||++|.|++++|.++++.+++
T Consensus       101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          101 WKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHTCSCTTTSCEEEEEECTTCSS----CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccccCCCcEEEEEECCcccc----cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999876542   5689999999999964    5678888889988 567899999999999999999999998875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.94  E-value=4.4e-26  Score=162.68  Aligned_cols=142  Identities=27%  Similarity=0.438  Sum_probs=125.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+|+.+..
T Consensus        18 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   95 (167)
T 1c1y_A           18 ALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD   95 (167)
T ss_dssp             HHHHHHHHCCCCCSCCCCSEEEE-EEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCCccceE-EEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            566776     567889998554 466677 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.........|+++|+||+|+.+   .+.+..+++..++... +++++++||++|.|++++|.++.+.+
T Consensus        96 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A           96 LREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             HHHHHHHHHCCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCCCcEEEEEECccccc---cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            999998876666789999999999976   4667888899999887 78999999999999999999999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.6e-26  Score=168.35  Aligned_cols=145  Identities=35%  Similarity=0.596  Sum_probs=129.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus        37 Ssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~  115 (192)
T 2fg5_A           37 SSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK  115 (192)
T ss_dssp             HHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHH
Confidence            3677777     4578999999999888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.... ....|+++|+||+|+..   .+.+..+++.+++...+++++++||+++.|++++|.+|.+.+.+
T Consensus       116 ~~~~~i~~~~-~~~~piiiv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          116 KWVKELKEHG-PENIVMAIAGNKCDLSD---IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHhC-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            9999998865 45689999999999965   35678899999999999999999999999999999999987644

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.94  E-value=5.4e-26  Score=164.29  Aligned_cols=145  Identities=19%  Similarity=0.301  Sum_probs=120.4

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||++ +.+.+.+.+ ++..+.+++|||+|+++     ..+++++|++|+|||++++++|+.+..
T Consensus        21 Tsli~~l~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~   93 (178)
T 2iwr_A           21 SSLIHRFLTGSYQVLEKTES-EQYKKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSR   93 (178)
T ss_dssp             HHHHHHHHHSCCCCCSSCSS-SEEEEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcCCCcc-eeEEEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHH
Confidence            3677777    334889998 455677888 88999999999999976     568899999999999999999999999


Q ss_pred             HHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-CCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+..+.....  ....|+++|+||+|+... ..+.+..+++.+++... +++++++||++|.|++++|.++++.+.....
T Consensus        94 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A           94 LHGQLSSLRGEGRGGLALALVGTQDRISAS-SPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHCSSSCCCEEEEEEECTTCBTT-BCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECcccccc-ccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence            8777766543  246899999999999421 13668889999998875 6899999999999999999999999987654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.94  E-value=9.1e-26  Score=161.46  Aligned_cols=142  Identities=34%  Similarity=0.639  Sum_probs=127.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..
T Consensus        21 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   99 (170)
T 1z0j_A           21 SIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN   99 (170)
T ss_dssp             HHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence            566776     5578899999999888888 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+++..++...+++++++||++|.|++++|.+|.+.+
T Consensus       100 ~~~~l~~~~-~~~~~iilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          100 WVRELRQHG-PPSIVVAIAGNKCDLTD---VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             HHHHHHHHS-CTTSEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCCCcEEEEEECCcccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            999998864 45689999999999976   366788889999999999999999999999999999998865

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=3.5e-26  Score=168.94  Aligned_cols=151  Identities=25%  Similarity=0.389  Sum_probs=107.7

Q ss_pred             eeeeeec-------cCCCCCcceeeEEEEEEEecCCc--EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHH
Q psy38             2 VTLLYLY-------IQISDPTVGVDFFARLVTMRDGA--RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASF   72 (193)
Q Consensus         2 ~sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~--~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~   72 (193)
                      +||+++|       ...+.||+|.++....+.+ ++.  .+.+.+|||+|++.+..++..+++++|++|+|||++++.+|
T Consensus        34 ssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~  112 (208)
T 2yc2_C           34 SALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESF  112 (208)
T ss_dssp             ---------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHH
T ss_pred             HHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHH
Confidence            4677776       3478899988999999998 777  89999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC-CcCHHHHHHHHHHHH
Q psy38            73 EHIPVWMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS-GFQVENAFTAVTQEI  149 (193)
Q Consensus        73 ~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~e~f~~i~~~i  149 (193)
                      +.+..|+..+.....  ....|+++|+||+|+...  .+.+..+++.+++...+++++++||++ +.|++++|.+|++.+
T Consensus       113 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          113 ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ--RHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             HHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccCCcEEEEEECcccchh--hccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence            999999999998754  257899999999999651  256788899999999999999999999 999999999999998


Q ss_pred             HHHhcC
Q psy38           150 YNRVQS  155 (193)
Q Consensus       150 ~~~~~~  155 (193)
                      .+....
T Consensus       191 ~~~~~~  196 (208)
T 2yc2_C          191 YRNYED  196 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=1.3e-25  Score=166.64  Aligned_cols=148  Identities=36%  Similarity=0.624  Sum_probs=132.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..
T Consensus        35 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  113 (213)
T 3cph_A           35 CLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ  113 (213)
T ss_dssp             HHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            567776     4678899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      |+..+.... ....|+++|+||+|+..    +.+..+++..++...+++++++||+++.||+++|.+|.+.+.+.....
T Consensus       114 ~~~~i~~~~-~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  187 (213)
T 3cph_A          114 WFKTVNEHA-NDEAQLLLVGNKSDMET----RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHHHHHT-TTCSEEEEEEECTTCSS----CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhc-CCCCCEEEEEECCCCcc----cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            999998865 34689999999999943    567788888999999999999999999999999999999998876544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.94  E-value=6.8e-26  Score=164.52  Aligned_cols=148  Identities=32%  Similarity=0.451  Sum_probs=129.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        33 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  110 (187)
T 2a9k_A           33 ALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD  110 (187)
T ss_dssp             HHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            566666     567888887544 455667 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS  155 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~  155 (193)
                      |+..+.........|+++|+||+|+..   .+.+..+++.+++...+++++++||+++.|++++|.+|.+.+.++..+
T Consensus       111 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  185 (187)
T 2a9k_A          111 FREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME  185 (187)
T ss_dssp             HHHHHHHHHCCTTCCEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCCEEEEEECccccc---cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            999999887666789999999999966   356788899999999999999999999999999999999999876543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.2e-26  Score=170.50  Aligned_cols=142  Identities=24%  Similarity=0.301  Sum_probs=121.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.. ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..
T Consensus        23 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  100 (199)
T 2gf0_A           23 SLVLRFVKGTFRDTYIPTIEDTY-RQVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP  100 (199)
T ss_dssp             HHHHHHHHSCCCCTTSCCCCEEE-EEEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred             HHHHHHHcCCCCCcccCccccce-eEEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHH
Confidence            567776     557889987544 455666 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        78 ~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+..+..... ....|+++|+||+|+..    +.+..+++..++...+++++++||++|.|++++|.+|++.+.
T Consensus       101 ~~~~i~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          101 IYKLIVQIKGSVEDIPVMLVGNKCDETQ----REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             HHHHHHHHHSCGGGSCEEEEEECTTCSS----CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECccCCc----cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            9888877643 23578999999999965    557788888999999999999999999999999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.94  E-value=4e-26  Score=162.79  Aligned_cols=144  Identities=32%  Similarity=0.459  Sum_probs=123.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..
T Consensus        19 sl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   96 (168)
T 1u8z_A           19 ALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD   96 (168)
T ss_dssp             HHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCccCCCCCCCcceEE-EEEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence            566666     567888887554 455667 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+.+   .+.+..+++.+++...+++++++||++|.|++++|.++++.+.+
T Consensus        97 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A           97 FREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHCCTTSCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCcEEEEEECccccc---cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            999999887666789999999999976   35678889999999999999999999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=7.1e-26  Score=166.43  Aligned_cols=145  Identities=30%  Similarity=0.410  Sum_probs=127.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...|.||++.++ ...+.+ ++..+.+.+|||+|++. ..++..+++++|++|+|||++++++|+.+..
T Consensus        43 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~  119 (196)
T 2atv_A           43 ALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLP  119 (196)
T ss_dssp             HHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHH
Confidence            567776     567889998555 555677 88899999999999988 7788999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCc-CHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF-QVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+..   .+.+..+++.+++...+++++++||++|. |++++|.+|++.+.++.
T Consensus       120 ~~~~i~~~~~~~~~piilv~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          120 LKNILDEIKKPKNVTLILVGNKADLDH---SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHTTSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCcEEEEEECccccc---ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            999999876666789999999999976   36688899999999999999999999999 99999999999988754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=1e-25  Score=165.50  Aligned_cols=148  Identities=27%  Similarity=0.355  Sum_probs=122.2

Q ss_pred             eeeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-cccchhhhccCccEEEEEEeCCChhHHhh
Q psy38             2 VTLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-FRSITKSYYRNSVGALLVYDITSRASFEH   74 (193)
Q Consensus         2 ~sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~   74 (193)
                      +||++||.      ....+++|.++..+.+.+ +|..+.+.+|||+|.+. +..+...+++.+|++|+|||+++++||+.
T Consensus        20 SsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~   98 (192)
T 2cjw_A           20 STLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEK   98 (192)
T ss_dssp             HHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHH
T ss_pred             HHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHH
Confidence            36788871      123345778888888888 99999999999999876 55677889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +..|+..+.........|+++|+||+|+..   .+.+..+++..++...+++|++|||++|.||+++|.++++.+....
T Consensus        99 ~~~~~~~l~~~~~~~~~piilV~NK~Dl~~---~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A           99 ASELRIQLRRARQTEDIPIILVGNKSDLVR---XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHTTTSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEEechhhhc---cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence            999998888764445689999999999965   3667888888888889999999999999999999999999986654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=2.3e-25  Score=163.73  Aligned_cols=143  Identities=29%  Similarity=0.590  Sum_probs=126.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcE-------------------------------------EEEEEeeC
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGAR-------------------------------------IKLQLWDT   40 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~-------------------------------------~~l~l~D~   40 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..                                     +.+.+|||
T Consensus        22 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt  100 (208)
T 3clv_A           22 SIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDT  100 (208)
T ss_dssp             HHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC-------------------------------CCCTTTCEEEEEEEEC
T ss_pred             HHHHHHHhCcCCCCcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccccccccCccceeEEEEEEC
Confidence            567777     5678999999999998888 6655                                     89999999


Q ss_pred             CCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH
Q psy38            41 AGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA  120 (193)
Q Consensus        41 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~  120 (193)
                      +|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....   .|+++|+||+|+ .   .+.+..+++.+++
T Consensus       101 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~piilv~NK~D~-~---~~~~~~~~~~~~~  173 (208)
T 3clv_A          101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---YIIILVANKIDK-N---KFQVDILEVQKYA  173 (208)
T ss_dssp             TTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---CEEEEEEECTTC-C----CCSCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---CcEEEEEECCCc-c---cccCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999988653   899999999994 3   3667889999999


Q ss_pred             HhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           121 SQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       121 ~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      ...+++++++||++|.|++++|.+|.+.+.++.
T Consensus       174 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          174 QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.94  E-value=8.9e-26  Score=163.24  Aligned_cols=149  Identities=36%  Similarity=0.580  Sum_probs=116.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+.++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        23 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  102 (182)
T 1ky3_A           23 SLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS  102 (182)
T ss_dssp             HHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHH
Confidence            567776     567889999999999888833677899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-hCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-QNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.....   ....|+++|+||+|+...  .+.+..+++.+++. ..+++++++||++|.|++++|.++.+.+.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          103 WRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCcCCCcEEEEEECCccccc--cccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            9999987753   256899999999999542  35577888888988 46789999999999999999999999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.94  E-value=5.7e-26  Score=163.85  Aligned_cols=143  Identities=35%  Similarity=0.624  Sum_probs=128.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        29 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  107 (179)
T 2y8e_A           29 SLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK  107 (179)
T ss_dssp             HHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence            566776     5678899999999999998 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+..+.... ....|+++|+||+|+.+   .+.+..+++..++...+++++++||++|.|++++|.+|.+.+.
T Consensus       108 ~~~~i~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          108 WIDDVRTER-GSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHHHHHHHH-TTSSEEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHHHHHhc-CCCCcEEEEEECCcccc---cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            999998765 34689999999999976   3667888899999999999999999999999999999987653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=169.63  Aligned_cols=146  Identities=36%  Similarity=0.529  Sum_probs=118.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..
T Consensus        43 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~  121 (199)
T 2p5s_A           43 SFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE  121 (199)
T ss_dssp             HHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHH
Confidence            567776     4568899998999899998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCC---CCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQS---GVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~---~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+..+.... ....|+++|+||+|+...   ...+.+..+++..++...+++++++||++|.||+++|.+|++.+.
T Consensus       122 ~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          122 WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999888764 346899999999999521   013668888999999999999999999999999999999998775

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.94  E-value=1.3e-25  Score=164.72  Aligned_cols=145  Identities=28%  Similarity=0.456  Sum_probs=125.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~   76 (193)
                      ||+++|     ...+.||++.++. ..+.+ ++..+.+++|||+|++.+..++..+++++|++|+|||++++.+|+.+ .
T Consensus        38 sl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  115 (194)
T 3reg_A           38 CLLLAFSKGEIPTAYVPTVFENFS-HVMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIST  115 (194)
T ss_dssp             HHHHHHHHSCCCSSCCCCSEEEEE-EEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCccCCeeeeeeE-EEEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHH
Confidence            567777     5678999986655 46667 88999999999999999999999999999999999999999999998 6


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-EEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-HFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+....  ...|+++|+||+|+..+. .+.+..+++.+++...++. ++++||++|.||+++|.++++.+..+
T Consensus       116 ~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          116 KWEPEIKHYI--DTAKTVLVGLKVDLRKDG-SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             THHHHHHHHC--TTSEEEEEEECGGGCCTT-TTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhC--CCCCEEEEEEChhhccCC-CCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            7888888653  468999999999996521 3668889999999999987 99999999999999999999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=165.60  Aligned_cols=148  Identities=28%  Similarity=0.383  Sum_probs=122.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...|.||++.. ....+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+|+.+. 
T Consensus        35 sl~~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~  112 (201)
T 2q3h_A           35 SLVVSYTTNGYPTEYIPTAFDN-FSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSE  112 (201)
T ss_dssp             HHHHHHHC--------CCSSEE-EEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCcccce-eEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHH
Confidence            566666     56788999744 4566777 888999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||+|+..+.         ..+.+..+++..++...++ ++++|||++|.||+++|.+++
T Consensus       113 ~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  190 (201)
T 2q3h_A          113 KWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI  190 (201)
T ss_dssp             THHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHH
Confidence            7999988764  268999999999996421         1256788889999998887 999999999999999999999


Q ss_pred             HHHHHHhc
Q psy38           147 QEIYNRVQ  154 (193)
Q Consensus       147 ~~i~~~~~  154 (193)
                      +.+.+...
T Consensus       191 ~~~~~~~~  198 (201)
T 2q3h_A          191 VAGIQYSD  198 (201)
T ss_dssp             HHHHHHHC
T ss_pred             HHHhcccc
Confidence            99887644

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.94  E-value=6.4e-26  Score=161.57  Aligned_cols=144  Identities=31%  Similarity=0.478  Sum_probs=126.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++ +.....+.+ ++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..
T Consensus        18 sli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   95 (167)
T 1kao_A           18 ALTVQFVTGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP   95 (167)
T ss_dssp             HHHHHHHHSCCCSCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCCCCcc-eeEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHH
Confidence            566666     567888886 455677788 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.|++++|.++.+.+.+
T Consensus        96 ~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A           96 MRDQIIRVKRYEKVPVILVGNKVDLES---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHTTTSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEECCcccc---cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            999998876666789999999999965   46678888999999999999999999999999999999987753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.7e-25  Score=164.00  Aligned_cols=144  Identities=25%  Similarity=0.345  Sum_probs=124.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...+.||++..+ ...+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++++|..+. 
T Consensus        33 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  110 (194)
T 2atx_A           33 CLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE  110 (194)
T ss_dssp             HHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence            566666     567899997555 566777 888999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||+|+....         ..+.+..+++.+++...++ +++++||++|.||+++|.+++
T Consensus       111 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  188 (194)
T 2atx_A          111 EWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI  188 (194)
T ss_dssp             THHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence            7999998864  268999999999996521         1246788999999999887 999999999999999999999


Q ss_pred             HHHH
Q psy38           147 QEIY  150 (193)
Q Consensus       147 ~~i~  150 (193)
                      +.++
T Consensus       189 ~~i~  192 (194)
T 2atx_A          189 IAIL  192 (194)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.94  E-value=7.6e-26  Score=164.71  Aligned_cols=145  Identities=27%  Similarity=0.393  Sum_probs=123.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~   76 (193)
                      ||+++|     ...|.||++.++ ...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++++|+.+ .
T Consensus        22 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   99 (184)
T 1m7b_A           22 ALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK   99 (184)
T ss_dssp             HHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHH
Confidence            677777     567899998665 456677 88899999999999999999999999999999999999999999999 6


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCC-CCcCHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSR-SGFQVENAFTAV  145 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~e~f~~i  145 (193)
                      .|+..+....  ...|+++|+||+|+..+         ...+.++.+++.++++..+ ++|++|||+ ++.||+++|.++
T Consensus       100 ~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i  177 (184)
T 1m7b_A          100 KWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA  177 (184)
T ss_dssp             THHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHH
Confidence            7999888764  36899999999999641         1125688899999999887 699999999 689999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      ++.+++
T Consensus       178 ~~~~l~  183 (184)
T 1m7b_A          178 TLACVN  183 (184)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.93  E-value=1.2e-25  Score=166.86  Aligned_cols=146  Identities=27%  Similarity=0.390  Sum_probs=124.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-   75 (193)
                      +||+++|     ...|.||++.++ ...+.+ ++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+.+ 
T Consensus        42 SsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~  119 (205)
T 1gwn_A           42 TALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL  119 (205)
T ss_dssp             HHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence            3677777     567899998666 456777 88899999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCC-CCcCHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSR-SGFQVENAFTA  144 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~e~f~~  144 (193)
                      ..|+..+....  ...|+++|+||+|+..+         ...+.++.+++.++++..+ ++|++|||+ ++.||+++|.+
T Consensus       120 ~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~  197 (205)
T 1gwn_A          120 KKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV  197 (205)
T ss_dssp             HTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence            68999888764  36899999999999641         1125688899999998877 699999999 68999999999


Q ss_pred             HHHHHHH
Q psy38           145 VTQEIYN  151 (193)
Q Consensus       145 i~~~i~~  151 (193)
                      +++.+++
T Consensus       198 l~~~~l~  204 (205)
T 1gwn_A          198 ATLACVN  204 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.93  E-value=2e-25  Score=163.47  Aligned_cols=137  Identities=18%  Similarity=0.228  Sum_probs=119.8

Q ss_pred             CCCcceeeEEEEEE-EecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC------ChhHHhhHHHHHHHHHH
Q psy38            12 SDPTVGVDFFARLV-TMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT------SRASFEHIPVWMMEAKR   84 (193)
Q Consensus        12 ~~pt~~~~~~~~~~-~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~   84 (193)
                      +.||+|.++....+ .+ ++..+.+++|||+|++++..++..+++++|++|+|||++      +.++|..+..|+..+..
T Consensus        53 ~~~t~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~  131 (198)
T 3t1o_A           53 DERTLFFDFLPLDIGEV-KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL  131 (198)
T ss_dssp             SCEEEEEEECCSSCCCS-SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccceeeeecccccccc-cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc
Confidence            66799888887777 56 888999999999999999999999999999999999999      56788888889888742


Q ss_pred             hcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            85 HIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        85 ~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                        .....|+++|+||+|+..     .+..+++.+++...++ +++++||++|.|++++|.+|++.+.++.+++
T Consensus       132 --~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~~  197 (198)
T 3t1o_A          132 --TLDDVPIVIQVNKRDLPD-----ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAGG  197 (198)
T ss_dssp             --CTTSSCEEEEEECTTSTT-----CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC--
T ss_pred             --ccCCCCEEEEEEchhccc-----ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhcC
Confidence              345789999999999965     3788899999999999 9999999999999999999999999877653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.93  E-value=1.1e-24  Score=159.06  Aligned_cols=145  Identities=31%  Similarity=0.446  Sum_probs=116.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.+|++. .....+.+ ++..+.+.+|||+|++++..++..+++.+|++++|||++++.++.++..
T Consensus        36 sli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  113 (190)
T 3con_A           36 ALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL  113 (190)
T ss_dssp             HHHHHHHHSSCCSCCCTTCCE-EEEEEEEE-TTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCccccCCccce-EEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHH
Confidence            566666     5567888864 44566777 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.........|+++|+||+|+..    +.+..+++.+++...+++++++||+++.|++++|.+|++.+.+..
T Consensus       114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          114 YREQIKRVKDSDDVPMVLVGNKCDLPT----RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEECTTCSC----CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCeEEEEEECCcCCc----ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            999998876556789999999999965    456788899999999999999999999999999999999887643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.93  E-value=3.6e-25  Score=165.07  Aligned_cols=147  Identities=25%  Similarity=0.407  Sum_probs=107.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...|.||++. .....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+. 
T Consensus        49 sli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  126 (214)
T 2j1l_A           49 SLLMVFADGAFPESYTPTVFE-RYMVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN  126 (214)
T ss_dssp             HHHHHHHC-------CCCCCE-EEEEEEEE-TTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCccce-eEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence            566776     4678899864 44566777 888999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||+|+....         ..+.+..+++.++++..++ ++++|||++|.||+++|.+|+
T Consensus       127 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~  204 (214)
T 2j1l_A          127 RWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA  204 (214)
T ss_dssp             THHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            6999888764  358999999999996521         0136788889999999998 999999999999999999999


Q ss_pred             HHHHHHh
Q psy38           147 QEIYNRV  153 (193)
Q Consensus       147 ~~i~~~~  153 (193)
                      +.+++..
T Consensus       205 ~~~~~~~  211 (214)
T 2j1l_A          205 EVALSSR  211 (214)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhh
Confidence            9987643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.93  E-value=2.7e-25  Score=161.31  Aligned_cols=145  Identities=28%  Similarity=0.404  Sum_probs=123.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...+.||++.. ....+.+ ++..+.+++|||+|++++..++..+++++|++|+|||++++.+|..+. 
T Consensus        20 sl~~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   97 (186)
T 1mh1_A           20 CLLISYTTNAFPGEYIPTVFDN-YSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRA   97 (186)
T ss_dssp             HHHHHHHHSSCCSSCCCCSCCE-EEEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCcccce-eEEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence            566555     66788998744 4566677 889999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+.....  ..|+++|+||+|+....         ..+.+..+++..++...++ +++++||++|.|++++|.++.
T Consensus        98 ~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  175 (186)
T 1mh1_A           98 KWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  175 (186)
T ss_dssp             THHHHHHHHST--TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHH
Confidence            69988887642  68899999999986521         0146788889999999997 999999999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      +.+.+
T Consensus       176 ~~~~~  180 (186)
T 1mh1_A          176 RAVLC  180 (186)
T ss_dssp             HHHSC
T ss_pred             HHHhc
Confidence            98754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.93  E-value=1.4e-24  Score=154.31  Aligned_cols=142  Identities=33%  Similarity=0.481  Sum_probs=124.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||++ +.....+.+ ++..+.+.+||++|++++..++..+++.+|++++|||++++.++..+..
T Consensus        18 sl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~   95 (166)
T 2ce2_X           18 ALTIQLIQNHFVDECDPTIE-DSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ   95 (166)
T ss_dssp             HHHHHHHHSSCCSCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCcCccccCCccc-eEEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHH
Confidence            566666     566788886 444566777 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+..+.........|+++|+||+|+..    +.+..+++.+++...+++++++||+++.|++++|.++.+.+.
T Consensus        96 ~~~~i~~~~~~~~~p~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X           96 YREQIKRVKDSDDVPMVLVGNKSDLAA----RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEECTTCSC----CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEEEchhhhh----cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            999998876655789999999999965    456788888999999999999999999999999999998875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.93  E-value=1.2e-24  Score=160.52  Aligned_cols=145  Identities=29%  Similarity=0.420  Sum_probs=123.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~   76 (193)
                      ||+++|     ...|.||++.++.. .+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|..+ .
T Consensus        40 sli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  117 (201)
T 2gco_A           40 CLLIVFSKDQFPEVYVPTVFENYIA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE  117 (201)
T ss_dssp             HHHHHHHHSSCCSSCCCSSCCCCEE-EEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCcCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence            566776     56788999877654 4677 88889999999999999999999999999999999999999999999 6


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||+|+....         ..+.+..+++.+++...++ +++++||++|.||+++|.+|.
T Consensus       118 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~  195 (201)
T 2gco_A          118 KWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT  195 (201)
T ss_dssp             THHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHH
Confidence            7888887754  358899999999996521         1145788899999999988 899999999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      +.+++
T Consensus       196 ~~~l~  200 (201)
T 2gco_A          196 RAGLQ  200 (201)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            98763

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.92  E-value=2.1e-24  Score=160.98  Aligned_cols=147  Identities=22%  Similarity=0.361  Sum_probs=125.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.+|++.++....+...++..+.+.+|||+|++.+..++..++.++|++|+|||++++.+++++..
T Consensus        26 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  105 (218)
T 4djt_A           26 TYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR  105 (218)
T ss_dssp             HHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHH
Confidence            677777     456678888777777766634555899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.... ....|+++|+||+|+..   .+.+..+.+..++...+++++++||++|.|++++|.+|++.+....
T Consensus       106 ~~~~~~~~~-~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          106 WVKEFQAVV-GNEAPIVVCANKIDIKN---RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             HHHHHHHHH-CSSSCEEEEEECTTCC-------CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             HHHHHHHhc-CCCCCEEEEEECCCCcc---ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            999998875 34578999999999976   4578888999999999999999999999999999999999886643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.92  E-value=8.3e-27  Score=171.90  Aligned_cols=145  Identities=41%  Similarity=0.648  Sum_probs=118.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||++.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+.
T Consensus        47 Ssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  125 (199)
T 3l0i_B           47 SCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK  125 (199)
T ss_dssp             TTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence            3677887     4456788888999999999 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.... ....|+++|+||+|+..   .+.+..+++..++...+++++++||+++.||+++|.+|++.+.+
T Consensus       126 ~~~~~i~~~~-~~~~p~ilv~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          126 QWLQEIDRYA-SENVNKLLVGNKCDLTT---KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             HHHHHHHSCC--CCSEEEEC-CCSSCC-----CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHhc-cCCCCEEEEEECccCCc---cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999997654 44689999999999976   35566667788999999999999999999999999999876643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.92  E-value=1.2e-25  Score=160.27  Aligned_cols=145  Identities=22%  Similarity=0.343  Sum_probs=108.9

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|  +....+..   ..+.+.+|||+|++++..++..+++++|++++|||++++++|..+..
T Consensus        14 ssl~~~l~~~~~~~~~~t~~--~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   88 (164)
T 1r8s_A           14 TTILYKLKLGEIVTTIPTIG--FNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE   88 (164)
T ss_dssp             HHHHHHHHHHCSSCCCCCSS--CCEEEEEC---SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCcCcccCcCc--eeEEEEEE---CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            3677777    445788987  44444544   34789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+.+....+.+....+...+...++++++|||++|.|++++|.++.+.+.+
T Consensus        89 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A           89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            99988875444568999999999996521111111111111222245679999999999999999999987653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=5e-25  Score=161.79  Aligned_cols=147  Identities=17%  Similarity=0.257  Sum_probs=113.0

Q ss_pred             eeeeeec-----cC-CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY-----IQ-ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~-----~~-~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||+++|     .. .|.||+|.  ....+.   +..+.+.+|||+|++++..++..+++++|++|+|||++++++|..+
T Consensus        31 Ssl~~~l~~~~~~~~~~~~t~~~--~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~  105 (199)
T 4bas_A           31 TTIINQVKPAQSSSKHITATVGY--NVETFE---KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV  105 (199)
T ss_dssp             HHHHHHHSCCC----CCCCCSSE--EEEEEE---ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHH
T ss_pred             HHHHHHHhcCCCcccccccccce--eEEEEE---eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHH
Confidence            3677777     44 78999983  333343   3558899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC-------CCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-HHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEP-------HRPVFALVGCKLDLLQSGVPREVSEAEAKAF-ASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        76 ~~~~~~i~~~~~~-------~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ..|+..+......       ...|+++|+||+|+........+........ ++..++++++|||++|.||+++|++|++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  185 (199)
T 4bas_A          106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE  185 (199)
T ss_dssp             HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence            9999988765221       2689999999999976311112222222222 2557789999999999999999999999


Q ss_pred             HHHHHh
Q psy38           148 EIYNRV  153 (193)
Q Consensus       148 ~i~~~~  153 (193)
                      .+.+..
T Consensus       186 ~~~~~~  191 (199)
T 4bas_A          186 TASRQS  191 (199)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.7e-24  Score=160.54  Aligned_cols=146  Identities=27%  Similarity=0.416  Sum_probs=117.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH-H
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI-P   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~   76 (193)
                      ||+++|     ...+.||++.++.. .+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|..+ .
T Consensus        40 sli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  117 (207)
T 2fv8_A           40 CLLIVFSKDEFPEVYVPTVFENYVA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE  117 (207)
T ss_dssp             HHHHHHHHSSCC-------CCEEEE-EEEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcCCCcccceEEE-EEEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence            566776     45678998866654 4677 88889999999999999999999999999999999999999999999 6


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||+|+....         ..+.+..+++..++...++ +++++||++|.||+++|.+|+
T Consensus       118 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~  195 (207)
T 2fv8_A          118 KWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT  195 (207)
T ss_dssp             THHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHH
Confidence            7988887753  358899999999996521         0145788889999999888 899999999999999999999


Q ss_pred             HHHHHH
Q psy38           147 QEIYNR  152 (193)
Q Consensus       147 ~~i~~~  152 (193)
                      +.++..
T Consensus       196 ~~i~~~  201 (207)
T 2fv8_A          196 RAALQK  201 (207)
T ss_dssp             HHHHSC
T ss_pred             HHHHHH
Confidence            988753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.92  E-value=5.6e-25  Score=164.60  Aligned_cols=144  Identities=24%  Similarity=0.491  Sum_probs=126.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||+|.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+.
T Consensus        29 Ssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~  107 (221)
T 3gj0_A           29 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP  107 (221)
T ss_dssp             HHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence            3677776     6678899999999999988 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      .|+..+....  ...|+++|+||+|+.+.    .+. .+...++...+++++++||++|.|++++|.+|.+.+....
T Consensus       108 ~~~~~~~~~~--~~~p~ilv~nK~Dl~~~----~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          108 NWHRDLVRVC--ENIPIVLCGNKVDIKDR----KVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             HHHHHHHHHS--TTCCEEEEEECTTSSSC----SSC-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHhC--CCCCEEEEEECCccccc----ccc-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            9999999874  36899999999999652    222 2455678888899999999999999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.92  E-value=9.4e-25  Score=161.65  Aligned_cols=143  Identities=28%  Similarity=0.400  Sum_probs=120.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...+.||++ +.....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+++. 
T Consensus        45 sLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  122 (204)
T 4gzl_A           45 CLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA  122 (204)
T ss_dssp             HHHHHHHHSCCCC-CCCCSE-EEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCCeec-ceeEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            567555     668889986 666677777 889999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+....  ...|+++|+||+|+....         ..+.+..+++..+++..++ ++++|||++|.||+++|.+++
T Consensus       123 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  200 (204)
T 4gzl_A          123 KWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  200 (204)
T ss_dssp             THHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence            7998888764  468999999999986521         0123788899999999887 699999999999999999998


Q ss_pred             HHH
Q psy38           147 QEI  149 (193)
Q Consensus       147 ~~i  149 (193)
                      +.+
T Consensus       201 ~~~  203 (204)
T 4gzl_A          201 RAV  203 (204)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=7.2e-25  Score=157.02  Aligned_cols=145  Identities=21%  Similarity=0.337  Sum_probs=112.3

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|  +....+.+ +  .+.+.+|||+|++.+..++..+++++|++|+|||++++.+|..+..
T Consensus        21 ssl~~~l~~~~~~~~~~t~~--~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~   95 (171)
T 1upt_A           21 TTILYRLQVGEVVTTIPTIG--FNVETVTY-K--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS   95 (171)
T ss_dssp             HHHHHHHHHSSCCCCCCCSS--EEEEEEEE-T--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCCcCc--cceEEEEE-C--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            3677777    446788887  44455666 4  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+........+....+..++...+++++++||++|.|++++|.++.+.+.+
T Consensus        96 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A           96 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            99888775444578999999999996631111122222222333456789999999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.9e-24  Score=154.74  Aligned_cols=142  Identities=26%  Similarity=0.309  Sum_probs=120.6

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||++..+ ...+.. ++..+.+.+|||+|++++..++..+++.+|++|+|||++++.+++.+..
T Consensus        18 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~   95 (172)
T 2erx_A           18 SLVLRFVKGTFRESYIPTVEDTY-RQVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP   95 (172)
T ss_dssp             HHHHHHHTCCCCSSCCCCSCEEE-EEEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred             HHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHH
Confidence            567776     457888987554 455566 8888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+..... ....|+++|+||+|+..   .+.+...++..++...+++++++||++|.|++++|.+|.+.+
T Consensus        96 ~~~~i~~~~~~~~~~pii~v~nK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A           96 IYEQICEIKGDVESIPIMLVGNKCDESP---SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             HHHHHHHHHC---CCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCCCCCEEEEEEcccccc---ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            9988887643 24688999999999966   356788888899998899999999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.92  E-value=1.5e-25  Score=162.31  Aligned_cols=144  Identities=30%  Similarity=0.421  Sum_probs=105.7

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...+.||++..+. ..+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+. 
T Consensus        23 sl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  100 (182)
T 3bwd_D           23 CLLISYTSNTFPTDYVPTVFDNFS-ANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK  100 (182)
T ss_dssp             HHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCeeeeeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence            566666     5678889875443 34555 778889999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC-------CCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV-------PREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .|+..+....  ...|+++|+||+|+.+...       ...+..+++.+++...++ +++++||++|.|++++|.++++.
T Consensus       101 ~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          101 KWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             THHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            6999888764  2689999999999865210       122578888999998886 99999999999999999999987


Q ss_pred             HH
Q psy38           149 IY  150 (193)
Q Consensus       149 i~  150 (193)
                      ++
T Consensus       179 i~  180 (182)
T 3bwd_D          179 VL  180 (182)
T ss_dssp             HS
T ss_pred             Hh
Confidence            64

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.91  E-value=1.9e-24  Score=159.35  Aligned_cols=137  Identities=17%  Similarity=0.188  Sum_probs=106.6

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||++..  ...+.+ ++  +.+.+|||+|++.++.++..+++++|++|+|||++++++|..+..
T Consensus        39 SsLi~~l~~~~~~~~~~t~~~~--~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~  113 (198)
T 1f6b_A           39 TTLLHMLKDDRLGQHVPTLHPT--SEELTI-AG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE  113 (198)
T ss_dssp             HHHHHHHSCC------CCCCCS--CEEEEE-TT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHhcCCCCccCCCCCce--eEEEEE-CC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence            3677777    34678898765  356666 66  889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-----------------CCCcEEEecCCCCcCHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-----------------NDILHFETSSRSGFQVEN  140 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~e  140 (193)
                      |+..+.........|+++|+||+|+..     .++.+++.+++..                 .++++++|||++|.||++
T Consensus       114 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  188 (198)
T 1f6b_A          114 ELDSLMTDETIANVPILILGNKIDRPE-----AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE  188 (198)
T ss_dssp             HHHHHHTCGGGTTSCEEEEEECTTSTT-----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred             HHHHHHhCcccCCCcEEEEEECCCccc-----cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence            999998754445689999999999954     3567777776652                 345899999999999999


Q ss_pred             HHHHHHHH
Q psy38           141 AFTAVTQE  148 (193)
Q Consensus       141 ~f~~i~~~  148 (193)
                      +|.++.+.
T Consensus       189 l~~~l~~~  196 (198)
T 1f6b_A          189 GFRWMAQY  196 (198)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.91  E-value=2e-25  Score=162.27  Aligned_cols=139  Identities=25%  Similarity=0.300  Sum_probs=108.4

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|  +....+.+ ++  +.+.+|||+|++.++.++..+++++|++++|||++++++|+.+..|
T Consensus        31 sL~~~l~~~~~~~~~~t~g--~~~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~  105 (181)
T 1fzq_A           31 TLLKQLASEDISHITPTQG--FNIKSVQS-QG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQE  105 (181)
T ss_dssp             HHHHHHCCSCCEEEEEETT--EEEEEEEE-TT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCcccCcCC--eEEEEEEE-CC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHH
Confidence            567777    334678887  44556666 54  7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-----HHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF-----ASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +..+.........|+++|+||+|+.+.   .  ..++..+.     +...++++++|||++|.||+++|.++++.+.+
T Consensus       106 ~~~~~~~~~~~~~piilv~NK~Dl~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          106 LTELLEEEKLSCVPVLIFANKQDLLTA---A--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHTTCGGGTTCCEEEEEECTTSTTC---C--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             HHHHHhChhhcCCCEEEEEECcCcccC---C--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            988876544456899999999999652   1  22222222     12245689999999999999999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.91  E-value=6.2e-24  Score=155.58  Aligned_cols=137  Identities=23%  Similarity=0.265  Sum_probs=112.9

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||++..  ...+.+ ++  +.+.+|||+|++.++.++..+++++|++|+|||++++++|+.+..
T Consensus        37 Ssli~~l~~~~~~~~~~t~~~~--~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  111 (190)
T 1m2o_B           37 TTLLHMLKNDRLATLQPTWHPT--SEELAI-GN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV  111 (190)
T ss_dssp             HHHHHHHHHSCCCCCCCCCSCE--EEEEEE-TT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHhcCCCCccccCCCCC--eEEEEE-CC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHH
Confidence            3677777    44688898754  456666 66  889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh------------CCCcEEEecCCCCcCHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ------------NDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      |+..+.........|+++|+||+|+..     .++.++..++...            .++++++|||++|.||+++|+++
T Consensus       112 ~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  186 (190)
T 1m2o_B          112 ELDALFNIAELKDVPFVILGNKIDAPN-----AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL  186 (190)
T ss_dssp             HHHHHHTCGGGTTCCEEEEEECTTSTT-----CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHHcchhhcCCCEEEEEECCCCcC-----CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence            999988754445689999999999964     3556666665543            34689999999999999999999


Q ss_pred             HHH
Q psy38           146 TQE  148 (193)
Q Consensus       146 ~~~  148 (193)
                      ++.
T Consensus       187 ~~~  189 (190)
T 1m2o_B          187 SQY  189 (190)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            763

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.91  E-value=3.8e-25  Score=162.28  Aligned_cols=143  Identities=20%  Similarity=0.330  Sum_probs=103.6

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|  +....+.. +  .+.+.+|||+|++++..++..+++++|++|+|||++++++|+.+..|
T Consensus        44 sLi~~l~~~~~~~~~~t~~--~~~~~~~~-~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~  118 (192)
T 2b6h_A           44 TILYKLKLGEIVTTIPTIG--FNVETVEY-K--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADE  118 (192)
T ss_dssp             HHHHHHCSSCCEEEEEETT--EEEEEEEE-T--TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHH
T ss_pred             HHHHHHHhCCccccCCcCc--eeEEEEEE-C--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence            567777    234577876  44455555 4  48899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +..+.........|+++|+||+|+.+....+.+....+..++...++++++|||++|.|++++|.+|++.+.
T Consensus       119 l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          119 LQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            999887544457899999999999652111111111111122234567999999999999999999998763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=3.6e-25  Score=161.73  Aligned_cols=139  Identities=20%  Similarity=0.277  Sum_probs=109.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++..  +..   ..+.+.+|||+|++++..++..+++++|++|+|||++++++|..+..
T Consensus        37 sli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~  111 (188)
T 1zd9_A           37 TFVNVIASGQFNEDMIPTVGFNMRK--ITK---GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN  111 (188)
T ss_dssp             HHHHHHHHSCCCCSCCCCCSEEEEE--EEE---TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHcCCCCCccCCCCceeEEE--EEe---CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHH
Confidence            677777     45788999876543  333   45889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-----HHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF-----ASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+...     ....+..+.     +...++++++|||++|.||+++|.+|++.+..
T Consensus       112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA-----LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHTCGGGTTCCEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             HHHHHHhCcccCCCCEEEEEECCCCccC-----CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            9998887543456899999999999652     122222221     12245689999999999999999999986543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=2.3e-24  Score=156.85  Aligned_cols=140  Identities=20%  Similarity=0.296  Sum_probs=112.5

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|  +....+.+ ++  +.+.+|||+|++++...+..+++++|++|+|||++++.+|+.+..|
T Consensus        33 sl~~~l~~~~~~~~~~t~~--~~~~~~~~-~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  107 (186)
T 1ksh_A           33 TILKKFNGEDVDTISPTLG--FNIKTLEH-RG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE  107 (186)
T ss_dssp             HHHHHHTTCCCSSCCCCSS--EEEEEEEE-TT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCcccccCc--cceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence            567777    457888987  44456666 54  7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +..+.........|+++|+||+|+...     ...++..+..     ...+++++++||++|.|++++|.++.+.+.++
T Consensus       108 ~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          108 LQSLLVEERLAGATLLIFANKQDLPGA-----LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHTCGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhChhcCCCcEEEEEeCccCCCC-----CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            998887644456899999999999652     2233333322     23467899999999999999999999987653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.91  E-value=1.8e-24  Score=157.89  Aligned_cols=144  Identities=18%  Similarity=0.281  Sum_probs=110.6

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|  +....+.+ +  .+.+.+|||+|++++..++..+++++|++|+|||++++++|..+..|
T Consensus        37 sli~~l~~~~~~~~~~t~~--~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  111 (189)
T 2x77_A           37 SILYRLHLGDVVTTVPTVG--VNLETLQY-K--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHE  111 (189)
T ss_dssp             HHHHHTCCSCCEEECSSTT--CCEEEEEE-T--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCCCc--eEEEEEEE-C--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHH
Confidence            567777    334678887  44445565 4  48899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +..+.........|+++|+||+|+........+....+...+...++++++|||+++.|++++|+++.+.+.+
T Consensus       112 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          112 LYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence            9988876545678999999999996531111111111112223345689999999999999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.2e-24  Score=157.27  Aligned_cols=139  Identities=19%  Similarity=0.312  Sum_probs=107.3

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|.  ....+.+ ++  +.+.+|||+|++++..++..+++++|++|+|||++++++|+.+..|
T Consensus        31 sl~~~l~~~~~~~~~~t~~~--~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  105 (187)
T 1zj6_A           31 TILYQFSMNEVVHTSPTIGS--NVEEIVI-NN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE  105 (187)
T ss_dssp             HHHHHHHTTSCEEEECCSCS--SCEEEEE-TT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHH
T ss_pred             HHHHHHhcCCCCcCcCCCcc--ceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHH
Confidence            567776    2267788873  3455566 54  8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +..+.........|+++|+||+|+.+.     ...++..+..     ...+++++++||++|.|++++|++|++.+..
T Consensus       106 ~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          106 LYKMLAHEDLRKAGLLIFANKQDVKEC-----MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHTSGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             HHHHHhchhhCCCeEEEEEECCCCcCC-----CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            999987643456899999999999652     3344443332     2346789999999999999999999987644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.90  E-value=4.6e-23  Score=150.57  Aligned_cols=139  Identities=17%  Similarity=0.264  Sum_probs=112.6

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      ||+++|      ...+.||+|  +....+.+ ++  +.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus        36 sli~~l~~~~~~~~~~~~t~~--~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  110 (190)
T 2h57_A           36 TIINKLKPSNAQSQNILPTIG--FSIEKFKS-SS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK  110 (190)
T ss_dssp             HHHHHTSCGGGCCSSCCCCSS--EEEEEEEC-SS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCcCCccc--eeEEEEEE-CC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence            566776      346788887  55566666 54  78999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC--CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEP--HRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+......  ...|+++|+||+|+..     ....++..++..     ..+++++++||++|.||+++|++|.+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          111 EELDTLLNHPDIKHRRIPILFFANKMDLRD-----AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             HHHHHHHHSTTTTTSCCCEEEEEECTTSTT-----CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHhChhhccCCCeEEEEEeCcCccc-----CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            999999876443  5689999999999965     234555555553     2457899999999999999999999876


Q ss_pred             HH
Q psy38           150 YN  151 (193)
Q Consensus       150 ~~  151 (193)
                      .+
T Consensus       186 ~~  187 (190)
T 2h57_A          186 QT  187 (190)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.90  E-value=1.7e-22  Score=148.75  Aligned_cols=149  Identities=44%  Similarity=0.706  Sum_probs=128.1

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||++++     ...+.||+|.++....+.+ +|..+.+.+||++|++.+..++..++++++++++|||+++..+++++..
T Consensus        20 TLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   98 (199)
T 2f9l_A           20 NLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER   98 (199)
T ss_dssp             HHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence            566666     4567899998999899999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      |+..+.... ....|+++|+||.|+..   .+.+..+++..++...++.++++||+++.|++++|.++.+.+.+.....
T Consensus        99 ~~~~~~~~~-~~~~~i~~v~nK~Dl~~---~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~  173 (199)
T 2f9l_A           99 WLKELRDHA-DSNIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhc-CCCCeEEEEEECccccc---ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            998887653 34689999999999975   3567788899999999999999999999999999999999998865433

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.90  E-value=1.8e-24  Score=157.07  Aligned_cols=137  Identities=20%  Similarity=0.335  Sum_probs=109.1

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|...  ..+.+ ++  +.+.+|||+|++++..++..+++++|++|+|||++++++|+.+..
T Consensus        35 Ssli~~l~~~~~~~~~~t~~~~~--~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~  109 (181)
T 2h17_A           35 TTILYQFSMNEVVHTSPTIGSNV--EEIVI-NN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE  109 (181)
T ss_dssp             HHHHHHHHTTSCEEEECCSSSSC--EEEEE-TT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHH
T ss_pred             HHHHHHHhcCCCCccCCcCceee--EEEEE-CC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence            3677777    346778887443  45566 55  889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH-----HhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA-----SQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+.........|+++|+||+|+...     ...++..+..     ...+++++++||++|.|++++|.+|++.
T Consensus       110 ~~~~~~~~~~~~~~piilv~NK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          110 ELYKMLAHEDLRKAGLLIFANKQDVKEC-----MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHTCGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             HHHHHHhChhhCCCeEEEEEECCCcccC-----CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            9998887543456899999999999652     3333333332     2345689999999999999999999764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.90  E-value=4.3e-23  Score=162.77  Aligned_cols=145  Identities=28%  Similarity=0.395  Sum_probs=124.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH-
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP-   76 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-   76 (193)
                      ||+++|     ...+.||++ +.....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|.++. 
T Consensus       170 sli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  247 (332)
T 2wkq_A          170 CLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRA  247 (332)
T ss_dssp             HHHHHHHHSCCCCSCCCCSE-EEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCCccc-ceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHH
Confidence            567555     668899997 444666777 889999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+.....  ..|+++|+||+|+....         ..+.+..+++..++...++ ++++|||++|.||+++|.+++
T Consensus       248 ~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  325 (332)
T 2wkq_A          248 KWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  325 (332)
T ss_dssp             THHHHHHHHCT--TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHhhCC--CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHH
Confidence            69888887643  68999999999985421         0256888999999999997 999999999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      +.++.
T Consensus       326 ~~~~~  330 (332)
T 2wkq_A          326 RAVLC  330 (332)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            98764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=5.3e-24  Score=154.30  Aligned_cols=140  Identities=19%  Similarity=0.297  Sum_probs=108.2

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHH
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVW   78 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~   78 (193)
                      ||+++|    ...+.||+|.  ....+.+ ++  +.+.+|||+|++++..++..+++++|++++|||++++.+|+.+..|
T Consensus        33 sli~~l~~~~~~~~~~t~~~--~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  107 (183)
T 1moz_A           33 TILYRLQIGEVVTTKPTIGF--NVETLSY-KN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE  107 (183)
T ss_dssp             HHHHHTCCSEEEEECSSTTC--CEEEEEE-TT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHH
T ss_pred             HHHHHHhcCCcCccCCcCcc--ceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence            566776    3467888873  3455566 54  8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH-----hCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            79 MMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS-----QNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        79 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +..+.........|+++|+||+|+...     ...++..+...     ..+++++++||++|.|++++|+++.+.+.++
T Consensus       108 ~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          108 LHLMLQEEELQDAALLVFANKQDQPGA-----LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHTTSSTTSSCEEEEEEECTTSTTC-----CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcChhhCCCeEEEEEECCCCCCC-----CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            998887644567899999999999652     23333333332     2345799999999999999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.89  E-value=5.6e-24  Score=154.92  Aligned_cols=145  Identities=21%  Similarity=0.340  Sum_probs=108.2

Q ss_pred             eeeeec-------cCCCCCcceeeEEEEEEEec--CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh-hHH
Q psy38             3 TLLYLY-------IQISDPTVGVDFFARLVTMR--DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR-ASF   72 (193)
Q Consensus         3 sll~r~-------~~~~~pt~~~~~~~~~~~~~--~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~   72 (193)
                      ||+++|       ...+.||+|.++....+.+.  ++..+.+.+|||+|+++|..++..++.+++++++|||++++ .+|
T Consensus        17 tLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~   96 (184)
T 2zej_A           17 TLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV   96 (184)
T ss_dssp             HHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHH
T ss_pred             HHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHH
Confidence            566666       34578999988887765541  24578899999999999999999999999999999999997 589


Q ss_pred             hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC---HHHHHHHHHhCCCc----EEEecCCCCc-CHHHHHHH
Q psy38            73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS---EAEAKAFASQNDIL----HFETSSRSGF-QVENAFTA  144 (193)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~e~f~~  144 (193)
                      +.+..|+..+....  ...|+++||||+|+.+   .+.+.   ...+..++...+++    ++++||+++. +++++|..
T Consensus        97 ~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~  171 (184)
T 2zej_A           97 DAMKPWLFNIKARA--SSSPVILVGTHLDVSD---EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT  171 (184)
T ss_dssp             HTHHHHHHHHHHHC--TTCEEEEEEECGGGCC---HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC--CCCcEEEEEECCCccc---chhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHH
Confidence            99999999988753  3589999999999965   23332   34456677777876    9999999996 99999999


Q ss_pred             HHHHHHHH
Q psy38           145 VTQEIYNR  152 (193)
Q Consensus       145 i~~~i~~~  152 (193)
                      +.+.+...
T Consensus       172 i~~~~~~~  179 (184)
T 2zej_A          172 IINESLNF  179 (184)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcc
Confidence            98876553

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.82  E-value=6.1e-25  Score=162.39  Aligned_cols=145  Identities=28%  Similarity=0.385  Sum_probs=120.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.||++. .....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+.
T Consensus        44 Ssli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~  121 (204)
T 3th5_A           44 TCLLISYTTNAFPGEYIPTVFD-NYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVR  121 (204)
Confidence            4788777     5677888864 44566666 888899999999999999999999999999999999999999999996


Q ss_pred             -HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---------CCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38            77 -VWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---------PREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        77 -~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i  145 (193)
                       .|+..+.....  ..|+++|+||+|+.....         .+.+..+++.+++...++ +++++||++|.|++++|.+|
T Consensus       122 ~~~~~~l~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l  199 (204)
T 3th5_A          122 AKWYPEVRHHCP--NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA  199 (204)
Confidence             78888876532  689999999999965210         025667778888888887 99999999999999999999


Q ss_pred             HHHHH
Q psy38           146 TQEIY  150 (193)
Q Consensus       146 ~~~i~  150 (193)
                      ++.++
T Consensus       200 ~~~il  204 (204)
T 3th5_A          200 IRAVL  204 (204)
Confidence            88653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.88  E-value=1.2e-23  Score=154.73  Aligned_cols=144  Identities=17%  Similarity=0.265  Sum_probs=110.2

Q ss_pred             eeeeec--cCCCCCcceeeEEEEEEE--ecCCcEEEEEEeeCCCccccccch---hhhccCccEEEEEEeCCCh--hHHh
Q psy38             3 TLLYLY--IQISDPTVGVDFFARLVT--MRDGARIKLQLWDTAGQERFRSIT---KSYYRNSVGALLVYDITSR--ASFE   73 (193)
Q Consensus         3 sll~r~--~~~~~pt~~~~~~~~~~~--~~~~~~~~l~l~D~~g~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~   73 (193)
                      ||++++  .....+|++.++....+.  +.++..+.+++|||+|+++|..+.   ..+++++|++|+|||++++  +++.
T Consensus        35 sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  114 (196)
T 3llu_A           35 SIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALT  114 (196)
T ss_dssp             HHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHH
T ss_pred             HHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHH
Confidence            555554  112235666555554444  323677999999999999988776   8999999999999999997  7788


Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC----CCCccCHHHHHHHHH----hCCCcEEEecCCCCcCHHHHHHHH
Q psy38            74 HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG----VPREVSEAEAKAFAS----QNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        74 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      .+..|+..+...  ....|+++||||+|+..+.    ..+.+....+.+++.    ..+++|++|||++ .||+++|.++
T Consensus       115 ~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l  191 (196)
T 3llu_A          115 RLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV  191 (196)
T ss_dssp             HHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence            888888887654  3468999999999985410    124466677778888    6788999999999 9999999999


Q ss_pred             HHHH
Q psy38           146 TQEI  149 (193)
Q Consensus       146 ~~~i  149 (193)
                      ++.+
T Consensus       192 ~~~l  195 (196)
T 3llu_A          192 VQKL  195 (196)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.88  E-value=1.5e-21  Score=142.95  Aligned_cols=142  Identities=44%  Similarity=0.709  Sum_probs=125.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      ||+++|     ...+.||+|.++....+.+ +|..+.+++||++|++++..++..++++++++++|||.++..+|+.+..
T Consensus        44 TLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~  122 (191)
T 1oix_A           44 NLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER  122 (191)
T ss_dssp             HHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             HHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHH
Confidence            566666     5578899999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.... ....|+++|+||.|+.+   .+.+..+++..++...++.++++||+++.|++++|+++.+.+
T Consensus       123 ~~~~~~~~~-~~~~~i~~v~nK~Dl~~---~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          123 WLKELRDHA-DSNIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-CCCCcEEEEEECccccc---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            998877653 34679999999999975   355778889999999999999999999999999999998865

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=1.3e-22  Score=161.66  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=109.3

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----------hhHHhhHHHHHHHHH
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----------RASFEHIPVWMMEAK   83 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~   83 (193)
                      ||+|++  ...+.+ +  .+.+++|||+|+++++.+|..+|++++++|||||+++          .++|.+...|+..+.
T Consensus       179 ~T~Gi~--~~~~~~-~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~  253 (353)
T 1cip_A          179 KTTGIV--ETHFTF-K--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC  253 (353)
T ss_dssp             CCCSEE--EEEEEE-T--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred             ceeceE--EEEEee-C--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence            345533  344555 4  4889999999999999999999999999999999998          567999999999998


Q ss_pred             HhcCCCCCeEEEEeeCCCCCCCC-C-----------CCccCHHHHHHHHH-----------hCCCcEEEecCCCCcCHHH
Q psy38            84 RHIEPHRPVFALVGCKLDLLQSG-V-----------PREVSEAEAKAFAS-----------QNDILHFETSSRSGFQVEN  140 (193)
Q Consensus        84 ~~~~~~~~piilv~nK~Dl~~~~-~-----------~~~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~e  140 (193)
                      ......+.|++||+||.||.... .           ...++.+++.+++.           ..++.+++|||+++.||.+
T Consensus       254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~  333 (353)
T 1cip_A          254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF  333 (353)
T ss_dssp             TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred             cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence            76444579999999999984310 0           01367788888886           3567899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy38           141 AFTAVTQEIYNRV  153 (193)
Q Consensus       141 ~f~~i~~~i~~~~  153 (193)
                      +|.++.+.++...
T Consensus       334 vF~~v~~~i~~~~  346 (353)
T 1cip_A          334 VFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=6.9e-23  Score=163.15  Aligned_cols=145  Identities=14%  Similarity=0.109  Sum_probs=109.6

Q ss_pred             cCCCCCcceeeEE---------EEEEEecCC----cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC--------
Q psy38             9 IQISDPTVGVDFF---------ARLVTMRDG----ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT--------   67 (193)
Q Consensus         9 ~~~~~pt~~~~~~---------~~~~~~~~~----~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~--------   67 (193)
                      .++|.||++..+.         ...+.+ ++    +.+.+++|||+|+++++.+|..+|++++++|+|||++        
T Consensus       147 ~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~-~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e  225 (354)
T 2xtz_A          147 DINYIPTKEDVLYARVRTTGVVEIQFSP-VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFE  225 (354)
T ss_dssp             STTCCCCHHHHHHCCCCCCSEEEEEECC-CCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSS
T ss_pred             cCCCCCCchheeeecccccceeeEEEEe-ccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccccccc
Confidence            6789998753222         222334 55    6799999999999999999999999999999999998        


Q ss_pred             --ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC-CCCC-----------------ccCHHHHHHHHHh-----
Q psy38            68 --SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-GVPR-----------------EVSEAEAKAFASQ-----  122 (193)
Q Consensus        68 --~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~-----------------~v~~~~~~~~~~~-----  122 (193)
                        +.++|+++..|+..+.......+.|++|||||+||.++ ....                 ..+.+++.+++..     
T Consensus       226 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l  305 (354)
T 2xtz_A          226 DEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEEL  305 (354)
T ss_dssp             CTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHh
Confidence              78899999999999987644457899999999998431 0000                 0124667777432     


Q ss_pred             -----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38           123 -----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       123 -----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                                 ..+.+++|||+++.||+++|.++.+.++....
T Consensus       306 ~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l  348 (354)
T 2xtz_A          306 YYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNL  348 (354)
T ss_dssp             HHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence                       23457899999999999999999999887543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.88  E-value=1.6e-23  Score=164.15  Aligned_cols=145  Identities=12%  Similarity=0.151  Sum_probs=108.8

Q ss_pred             eeeeeec----c----CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc---chhhhccCccEEEEEEeCCCh-
Q psy38             2 VTLLYLY----I----QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS---ITKSYYRNSVGALLVYDITSR-   69 (193)
Q Consensus         2 ~sll~r~----~----~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---~~~~~~~~~d~~i~v~d~~~~-   69 (193)
                      +||+++|    .    ..+.||+|.++..    + + ..+.+++|||+|+++|..   .+..||++++++|+|||++++ 
T Consensus        13 TSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v-~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~   86 (331)
T 3r7w_B           13 SSICKVVFHNMQPLDTLYLESTSNPSLEH----F-S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEY   86 (331)
T ss_dssp             THHHHHHHSCCCSGGGTTCCCCCSCCCEE----E-C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCT
T ss_pred             HHHHHHHHcCCCCCccceecCeeeeeeEE----E-c-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchH
Confidence            4667665    1    1378999987763    3 3 348899999999999974   368999999999999999997 


Q ss_pred             -hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC----CCccCHHHHHHHHHh----CCCcEEEecCCCCcCHHH
Q psy38            70 -ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV----PREVSEAEAKAFASQ----NDILHFETSSRSGFQVEN  140 (193)
Q Consensus        70 -~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~e  140 (193)
                       +++..+..|+..+...  .++.|+++||||+||..+..    .+.+..+++.++++.    .++.|++|||++ .+|.+
T Consensus        87 ~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e  163 (331)
T 3r7w_B           87 INAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE  163 (331)
T ss_dssp             THHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred             HHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence             3333344445555443  34689999999999965211    145778888888886    678999999998 59999


Q ss_pred             HHHHHHHHHHHHhcC
Q psy38           141 AFTAVTQEIYNRVQS  155 (193)
Q Consensus       141 ~f~~i~~~i~~~~~~  155 (193)
                      +|..+++.+++..+.
T Consensus       164 AFs~iv~~li~~~~~  178 (331)
T 3r7w_B          164 AFSRIVQKLIPELSF  178 (331)
T ss_dssp             HHHHHHTTSSTTHHH
T ss_pred             HHHHHHHHHHhhHHH
Confidence            999999987765433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.87  E-value=1.4e-23  Score=160.59  Aligned_cols=142  Identities=23%  Similarity=0.260  Sum_probs=107.9

Q ss_pred             eeeeec--------cCCCCCcc-eeeEEEEEEE--------------ecCCcEEEEEEee--------------------
Q psy38             3 TLLYLY--------IQISDPTV-GVDFFARLVT--------------MRDGARIKLQLWD--------------------   39 (193)
Q Consensus         3 sll~r~--------~~~~~pt~-~~~~~~~~~~--------------~~~~~~~~l~l~D--------------------   39 (193)
                      ||++||        ...+.||+ +.++..+.+.              + ++..+.+++||                    
T Consensus        43 sLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~  121 (255)
T 3c5h_A           43 CLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE-DCVECKMHIVEQTEFIDDQTFQPHRSTALQP  121 (255)
T ss_dssp             HHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----------CEEEEEECCCEETTTCSBTTGGGCCC
T ss_pred             HHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc-CCcEEEEEEEEcccccccccccccccccccc
Confidence            566666        24567775 5666544433              3 67889999999                    


Q ss_pred             ---CCCccccccchhhhcc---------------------CccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeE
Q psy38            40 ---TAGQERFRSITKSYYR---------------------NSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVF   93 (193)
Q Consensus        40 ---~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~pi   93 (193)
                         ++|+++|..++..++.                     ++|++|+|||++++  .+|+.+..|+..+.........|+
T Consensus       122 ~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pi  201 (255)
T 3c5h_A          122 YIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPI  201 (255)
T ss_dssp             HHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCE
Confidence               7888888888888888                     89999999999998  999999999999987633346899


Q ss_pred             EEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            94 ALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ++|+||+|+..   .+.+  +++.+++.. .+++++++||++|.||+++|.+|++.+.
T Consensus       202 ilV~NK~Dl~~---~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          202 VVVLTKCDEGV---ERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             EEEEECGGGBC---HHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEEcccccc---cHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            99999999965   2333  567778876 4789999999999999999999998763

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=4.2e-22  Score=160.52  Aligned_cols=141  Identities=15%  Similarity=0.089  Sum_probs=109.6

Q ss_pred             cCCCCCcc-----------eeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---------
Q psy38             9 IQISDPTV-----------GVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---------   68 (193)
Q Consensus         9 ~~~~~pt~-----------~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---------   68 (193)
                      .++|.||+           |+++  ..+.+ ++  +.+++|||+|+++++.+|..||++++++|||||+++         
T Consensus       187 ~~~Y~PT~~Dil~~r~~TiGi~~--~~~~~-~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~  261 (402)
T 1azs_C          187 QDDYVPSDQDLLRCRVLTSGIFE--TKFQV-DK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN  261 (402)
T ss_dssp             CTTCCCCHHHHHHCCCCCCSEEE--EEEEE-TT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTS
T ss_pred             ccccCCccccccccccceeeeEE--EEeec-CC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECccccccccccc
Confidence            67787764           4333  44555 44  899999999999999999999999999999999999         


Q ss_pred             -hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCC---C------------------------CccCHHHHHHHH
Q psy38            69 -RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---P------------------------REVSEAEAKAFA  120 (193)
Q Consensus        69 -~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---~------------------------~~v~~~~~~~~~  120 (193)
                       .++|+++..|+..+.......+.|++|||||.||.....   .                        .....+++..|+
T Consensus       262 ~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi  341 (402)
T 1azs_C          262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFI  341 (402)
T ss_dssp             CSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHH
Confidence             889999999999998765456789999999999843100   0                        000145566653


Q ss_pred             -----Hh--------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38           121 -----SQ--------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       121 -----~~--------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                           ..        .++.+++|||+++.||+++|.++.+.++....
T Consensus       342 ~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          342 RDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence                 21        35678899999999999999999998887643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.87  E-value=7.7e-23  Score=161.92  Aligned_cols=145  Identities=21%  Similarity=0.330  Sum_probs=103.7

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    .....||++.++.  .+..   ..+.+.||||+|++.|..++..+++++|++|+|||++++.+|..+..
T Consensus       179 SsLl~~l~~~~~~~~~pT~~~~~~--~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~  253 (329)
T 3o47_A          179 TTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE  253 (329)
T ss_dssp             HHHHHHTCSSCCEEEEEETTEEEE--EEEE---TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHH
T ss_pred             HHHHHHHhCCCCCCcccccceEEE--EEec---CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHH
Confidence            3677777    2233477765543  3444   44889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..+.........|+++|+||+|+.+......+....+..++...+++++++||++|.||+++|.+|++.+.+
T Consensus       254 ~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            88888776545578999999999997631111111111111222245679999999999999999999987754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=1.6e-22  Score=159.03  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=110.1

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC----------ChhHHhhHHHHHHH
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT----------SRASFEHIPVWMME   81 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~   81 (193)
                      +.||+|+  ....+.+ +  .+.+++|||+|+++++.+|..||++++++|+|||++          +.++|.+...|+..
T Consensus       151 r~~TiGi--~~~~~~~-~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~  225 (327)
T 3ohm_A          151 RVPTTGI--IEYPFDL-Q--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT  225 (327)
T ss_dssp             CCCCCSE--EEEEEEE-T--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred             cCceeeE--EEEEEEe-e--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence            3445663  4445555 4  489999999999999999999999999999999665          56788888889999


Q ss_pred             HHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHH----------HhCCCcEEEecCCCCcCH
Q psy38            82 AKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFA----------SQNDILHFETSSRSGFQV  138 (193)
Q Consensus        82 i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i  138 (193)
                      +.......+.|++|+|||.|+.+.-             ....++.+++.++.          ...++.+++|||+++.||
T Consensus       226 i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV  305 (327)
T 3ohm_A          226 IITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI  305 (327)
T ss_dssp             HHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred             HhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence            8876555679999999999985410             11246788888883          346678899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy38           139 ENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       139 ~e~f~~i~~~i~~~~~  154 (193)
                      .++|..+.+.|++...
T Consensus       306 ~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          306 RFVFAAVKDTILQLNL  321 (327)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhH
Confidence            9999999999988543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.86  E-value=1.4e-21  Score=156.11  Aligned_cols=141  Identities=13%  Similarity=0.108  Sum_probs=105.0

Q ss_pred             cCCCCCc-----------ceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---------
Q psy38             9 IQISDPT-----------VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---------   68 (193)
Q Consensus         9 ~~~~~pt-----------~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---------   68 (193)
                      .++|.||           +|++  ...+.+ +  .+.+++|||+|++.++.+|..++++++++|||||+++         
T Consensus       171 ~~~Y~PT~~Dil~~r~~T~Gi~--~~~~~~-~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~  245 (362)
T 1zcb_A          171 VPDYIPSQQDILLARRPTKGIH--EYDFEI-K--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR  245 (362)
T ss_dssp             STTCCCCHHHHHHCCCCCSSEE--EEEEEE-T--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEE
T ss_pred             cCCCCCChhhhhhccCCccceE--EEEeee-C--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccc
Confidence            5667666           4543  344555 4  4889999999999999999999999999999999999         


Q ss_pred             -hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHH-----------hC
Q psy38            69 -RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFAS-----------QN  123 (193)
Q Consensus        69 -~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~-----------~~  123 (193)
                       .++|.+...|+..+.......+.|+|||+||.||.++.             ....++.+++..++.           ..
T Consensus       246 ~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~  325 (362)
T 1zcb_A          246 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQR  325 (362)
T ss_dssp             EEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--
T ss_pred             cccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCC
Confidence             78999999999999876444578999999999985310             011266788877762           34


Q ss_pred             CCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38           124 DILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus       124 ~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ++.+++|||+++.||+++|.++.+.+++...
T Consensus       326 ~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          326 PLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999987654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.85  E-value=2.9e-21  Score=151.08  Aligned_cols=129  Identities=17%  Similarity=0.126  Sum_probs=103.9

Q ss_pred             eeeeec-----c-CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh-HHhhH
Q psy38             3 TLLYLY-----I-QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA-SFEHI   75 (193)
Q Consensus         3 sll~r~-----~-~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~   75 (193)
                      ||+.||     . +.|.||+| +.....+.. ++   .+++||+  +++|+.+++.+++++|++|+|||++++. +++.+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~-~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l  104 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDE-TG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII  104 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTT-CEEEEECCC-SS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred             cEEEEEEcccccccCCCCCCc-cEEEEEEcC-CC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence            577777     4 78999999 454443332 32   6899999  8999999999999999999999999987 78888


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ..|+..+..    .+.|+++|+||+||.++   +.+  +++.+++...+  +++++|||++|.||+++|..+..
T Consensus       105 ~~~l~~~~~----~~~piilv~NK~DL~~~---~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          105 DKFLVLAEK----NELETVMVINKMDLYDE---DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHH----TTCEEEEEECCGGGCCH---HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHH----CCCCEEEEEeHHHcCCc---hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            999998765    25789999999999652   222  44566666666  89999999999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.85  E-value=1.4e-21  Score=145.25  Aligned_cols=143  Identities=12%  Similarity=0.164  Sum_probs=97.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCc-EEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChh-HHh
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGA-RIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRA-SFE   73 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~   73 (193)
                      +||+++|     ...|.++ +.++..  +.+ ++. .+.+.+|||+|++++.. ++..+++++|++|+|||+++.. ++.
T Consensus        21 Tsli~~l~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~   96 (214)
T 2fh5_B           21 TLLFVRLLTGQYRDTQTSI-TDSSAI--YKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVK   96 (214)
T ss_dssp             HHHHHHHHHSCCCCBCCCC-SCEEEE--EEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHH
T ss_pred             HHHHHHHhCCCcccccCCc-ceeeEE--EEe-cCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHH
Confidence            3677777     4455544 345554  566 443 68999999999999988 7889999999999999999854 576


Q ss_pred             hHHHHHHHHHHh-c-CCCCCeEEEEeeCCCCCCCCCCCcc-------------------------------CHHHHHHHH
Q psy38            74 HIPVWMMEAKRH-I-EPHRPVFALVGCKLDLLQSGVPREV-------------------------------SEAEAKAFA  120 (193)
Q Consensus        74 ~~~~~~~~i~~~-~-~~~~~piilv~nK~Dl~~~~~~~~v-------------------------------~~~~~~~~~  120 (193)
                      .+..|+..+... . .....|+++|+||+|+........+                               ..+++..|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  176 (214)
T 2fh5_B           97 DVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFE  176 (214)
T ss_dssp             HHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCC
T ss_pred             HHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcc
Confidence            676655554433 1 2346899999999999763111000                               001111111


Q ss_pred             Hh-C--CCcEEEecCCCC------cCHHHHHHHHHHH
Q psy38           121 SQ-N--DILHFETSSRSG------FQVENAFTAVTQE  148 (193)
Q Consensus       121 ~~-~--~~~~~~~Sa~~~------~~i~e~f~~i~~~  148 (193)
                      .. .  ++.|++|||++|      .||+++|.+|.+.
T Consensus       177 ~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          177 FSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             GGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            11 1  568999999999      9999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.83  E-value=1.2e-20  Score=148.04  Aligned_cols=143  Identities=18%  Similarity=0.286  Sum_probs=111.6

Q ss_pred             eeeeec--------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc-----ccchhhhccCccEEEEEEeCCCh
Q psy38             3 TLLYLY--------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-----RSITKSYYRNSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~--------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~   69 (193)
                      ||+++|        ...+.||++.++..  +.+ ++ .+.+.+|||+|++.+     ..++..+++++|++|+|||++++
T Consensus        18 SLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~-~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~   93 (307)
T 3r7w_A           18 SMRSIIFSNYSAFDTRRLGATIDVEHSH--LRF-LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST   93 (307)
T ss_dssp             HHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEE-TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS
T ss_pred             HHHHHHHhCCCCccccCcCCccceEEEE--EEe-CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh
Confidence            566665        23678898876664  344 44 588999999999988     77889999999999999999999


Q ss_pred             hHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCc----cCHHHHHHHHHhCC---CcEEEecCCCCcCHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPRE----VSEAEAKAFASQND---ILHFETSSRSGFQVENA  141 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~----v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~e~  141 (193)
                      ++|+++..|...+..... ..+.|+++|+||+|+.... .+.    +..+++.+++..+|   ++++++||++ .++.++
T Consensus        94 ~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~-~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~  171 (307)
T 3r7w_A           94 EVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD-KREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA  171 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH-HHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchh-hhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence            999999777555544321 3468999999999986410 122    55678888999987   7999999999 899999


Q ss_pred             HHHHHHHHHH
Q psy38           142 FTAVTQEIYN  151 (193)
Q Consensus       142 f~~i~~~i~~  151 (193)
                      |..++..++.
T Consensus       172 ~~~iv~~li~  181 (307)
T 3r7w_A          172 WSQIVCSLIP  181 (307)
T ss_dssp             HHHHHHTTCS
T ss_pred             HHHHHHHHcC
Confidence            9999876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=2.1e-21  Score=153.31  Aligned_cols=135  Identities=15%  Similarity=0.179  Sum_probs=106.0

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCC----------ChhHHhhHHHHHHH
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT----------SRASFEHIPVWMME   81 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~   81 (193)
                      +.||+|+  ....+.+   +.+.+++|||+|+++++.+|..||++++++|+|||++          +.++|.+...|+..
T Consensus       145 ~~~TiGi--~~~~~~~---~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~  219 (340)
T 4fid_A          145 RTKTTGI--HEYDFVV---KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD  219 (340)
T ss_dssp             CCCCCSC--EEEEEES---SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred             ccceeee--EEEEEEe---eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence            3444663  3344444   3488999999999999999999999999999999998          67899999999999


Q ss_pred             HHHhcCCCCCeEEEEeeCCCCCCCC----C--------CCccCHHHHHHHHHh---------------------------
Q psy38            82 AKRHIEPHRPVFALVGCKLDLLQSG----V--------PREVSEAEAKAFASQ---------------------------  122 (193)
Q Consensus        82 i~~~~~~~~~piilv~nK~Dl~~~~----~--------~~~v~~~~~~~~~~~---------------------------  122 (193)
                      +.......+.|++|+|||+||...-    +        ......+++.++...                           
T Consensus       220 i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  299 (340)
T 4fid_A          220 IMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVN  299 (340)
T ss_dssp             HHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------
T ss_pred             HhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccC
Confidence            9886555678999999999985310    0        011245666555432                           


Q ss_pred             CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           123 NDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       123 ~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..+.+++|||+++.||..+|..+.+.|+.
T Consensus       300 ~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          300 EKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            23678899999999999999999999998

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.82  E-value=2.1e-20  Score=133.65  Aligned_cols=133  Identities=15%  Similarity=0.110  Sum_probs=97.0

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCCh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~   69 (193)
                      ||+++|     ...+.|+++.+.....+.+ ++  ..+.+|||+|++++.      .+...++.  ++|++++|+|+++.
T Consensus        18 tL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~   94 (165)
T 2wji_A           18 TIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL   94 (165)
T ss_dssp             HHHHHHHCCSSSCC-----CCCCCEEEEEE-TT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH
T ss_pred             HHHHHHhCCCeeccCCCCcceeeeEEEEEE-CC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch
Confidence            567776     2344566556666677777 55  679999999998875      33466665  89999999999885


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ++   ...|+..+...    ..|+++|+||+|+...   +.+.. ++.+++...+++++++||++|.|++++|.++.+.+
T Consensus        95 ~~---~~~~~~~~~~~----~~p~ilv~nK~Dl~~~---~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A           95 ER---NLYLTLQLMEM----GANLLLALNKMDLAKS---LGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             HH---HHHHHHHHHHT----TCCEEEEEECHHHHHH---TTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             hH---hHHHHHHHHhc----CCCEEEEEEchHhccc---cChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            43   45577777652    4789999999998542   22332 35678888889999999999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.81  E-value=1.2e-19  Score=130.55  Aligned_cols=134  Identities=16%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEH   74 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~   74 (193)
                      ||+++|     ...+.|+++.++....+.+ ++  ..+.+|||+|++++..++..++..+|++|+|||++++   .+++.
T Consensus        23 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~   99 (178)
T 2lkc_A           23 TLLDAIRHSKVTEQEAGGITQHIGAYQVTV-ND--KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA   99 (178)
T ss_dssp             HHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TT--EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHH
T ss_pred             HHHHHHhCCccccCCCCceeEeeeEEEEEe-CC--ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH
Confidence            567776     4456677767777777777 66  4577999999999999999999999999999999883   33332


Q ss_pred             HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-------CC--CcEEEecCCCCcCHHHHHHHH
Q psy38            75 IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-------ND--ILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        75 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~--~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      +    ..+.    ....|+++|+||+|+...      ..+........       .+  ++++++||++|.|++++|.+|
T Consensus       100 l----~~~~----~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  165 (178)
T 2lkc_A          100 I----NHAK----AANVPIIVAINKMDKPEA------NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI  165 (178)
T ss_dssp             H----HHHG----GGSCCEEEEEETTTSSCS------CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred             H----HHHH----hCCCCEEEEEECccCCcC------CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence            2    2222    235789999999999652      22233222222       22  589999999999999999999


Q ss_pred             HHHHHHHh
Q psy38           146 TQEIYNRV  153 (193)
Q Consensus       146 ~~~i~~~~  153 (193)
                      ++.+....
T Consensus       166 ~~~~~~~~  173 (178)
T 2lkc_A          166 LLVSEMEE  173 (178)
T ss_dssp             HHHHHHTT
T ss_pred             HHhhhhhc
Confidence            98776543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.79  E-value=1.4e-18  Score=130.54  Aligned_cols=127  Identities=17%  Similarity=0.093  Sum_probs=92.6

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCcc------c----cccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHhc
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQE------R----FRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRHI   86 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~------~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~   86 (193)
                      ++....+.. ++  +.+.+|||+|+.      .    +.. +..++..+|++|+|||++++.+|..  ...|+..+... 
T Consensus        65 ~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-  139 (228)
T 2qu8_A           65 NLYVGHFDH-KL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-  139 (228)
T ss_dssp             CEEEEEEEE-TT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-
T ss_pred             eeeeeeeec-CC--CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-
Confidence            344444444 33  789999999983      3    221 2345788999999999999888762  23566666543 


Q ss_pred             CCCCCeEEEEeeCCCCCCCCCCCccCHH---HHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            87 EPHRPVFALVGCKLDLLQSGVPREVSEA---EAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        87 ~~~~~piilv~nK~Dl~~~~~~~~v~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                       ....|+++|+||+|+..   .+.+...   ....++...+  +++++|||++|.||+++|.+|++.+.+...
T Consensus       140 -~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          140 -FSNKSIVIGFNKIDKCN---MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             -C-CCCEEEEEECGGGCC-----CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             -hcCCcEEEEEeCcccCC---chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence             23689999999999976   3445543   4567777777  899999999999999999999999887654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.79  E-value=1.7e-19  Score=151.30  Aligned_cols=142  Identities=14%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEE------EEec-CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARL------VTMR-DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA   70 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~------~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   70 (193)
                      ||++++     ...+.||+|.++..+.      +.+. ++..+.+.+||++|++.+..+...+++++|++|+|||+++  
T Consensus        56 SLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~--  133 (535)
T 3dpu_A           56 SLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT--  133 (535)
T ss_dssp             HHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG--
T ss_pred             HHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC--
Confidence            567776     4678899998888663      2221 3446899999999999999999999999999999999875  


Q ss_pred             HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                       ++.+..|+..+..+..  +.|+++|+||+|+..   .+.+..+++.+++...+++++++||++|.||+++|.++.+.+.
T Consensus       134 -~~~~~~~~~~l~~~~~--~~pvilV~NK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~  207 (535)
T 3dpu_A          134 -DSNKHYWLRHIEKYGG--KSPVIVVMNKIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL  207 (535)
T ss_dssp             -GGGHHHHHHHHHHHSS--SCCEEEEECCTTTCT---TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred             -chhHHHHHHHHHHhCC--CCCEEEEEECCCccc---ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence             4677889999988752  589999999999976   4667888888999989999999999999999999999998776


Q ss_pred             HH
Q psy38           151 NR  152 (193)
Q Consensus       151 ~~  152 (193)
                      ..
T Consensus       208 ~~  209 (535)
T 3dpu_A          208 HP  209 (535)
T ss_dssp             CT
T ss_pred             cc
Confidence            53

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.77  E-value=1.5e-19  Score=131.44  Aligned_cols=139  Identities=15%  Similarity=0.148  Sum_probs=102.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC-----------ccccccchhhhccC-ccEEEEEE
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG-----------QERFRSITKSYYRN-SVGALLVY   64 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~~~~-~d~~i~v~   64 (193)
                      +||+++|     ...+.|++.  +....+.+ +    .+.+|||+|           ++.+..++..++++ +++++++|
T Consensus        15 Ssli~~l~~~~~~~~~~~~~t--~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   87 (190)
T 2cxx_A           15 STLIYRLTGKKVRRGKRPGVT--RKIIEIEW-K----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAV   87 (190)
T ss_dssp             HHHHHHHHSCCCSSSSSTTCT--TSCEEEEE-T----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHHHhCcCCccCCCCCcc--ceeEEEec-C----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEE
Confidence            3667776     345566553  33344444 3    588999999           67777888888887 88888888


Q ss_pred             eCCChhHHhhH-HHHHHH--------HHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCc-------EE
Q psy38            65 DITSRASFEHI-PVWMME--------AKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL-------HF  128 (193)
Q Consensus        65 d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-------~~  128 (193)
                      ++.+..++.++ ..|...        +.........|+++|+||+|+...   .   .+.+.+++...+++       ++
T Consensus        88 ~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~---~~~~~~~~~~~~~~~~~~~~~~~  161 (190)
T 2cxx_A           88 LVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN---V---QEVINFLAEKFEVPLSEIDKVFI  161 (190)
T ss_dssp             EEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC---H---HHHHHHHHHHHTCCGGGHHHHEE
T ss_pred             EEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc---H---HHHHHHHHHHhhhhhhccCCcEE
Confidence            88888888887 567653        333222346899999999999662   2   56677888887764       79


Q ss_pred             EecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           129 ETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       129 ~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +|||++|.|++++|.++++.+.+..
T Consensus       162 ~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          162 PISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHhcchhh
Confidence            9999999999999999999886643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.76  E-value=5.5e-19  Score=128.37  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=102.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCCh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~   69 (193)
                      ||+++|     ...+.|+++.+.....+.+ ++  ..+.+|||+|++.+.      .++..++.  .++++++++|.++ 
T Consensus        22 tL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-   97 (188)
T 2wjg_A           22 TIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-   97 (188)
T ss_dssp             HHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-
T ss_pred             HHHHHHhCCCccccCCCCeeccceEEEEEe-CC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-
Confidence            566666     2244566666777777777 55  789999999998875      34566665  5999999999875 


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                        ++....|+..+..    ...|+++|+||+|+...   +.+. ..+.+++...+++++++||+++.|++++|.++++.+
T Consensus        98 --~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~---~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~  167 (188)
T 2wjg_A           98 --LERNLYLTLQLME----MGANLLLALNKMDLAKS---LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  167 (188)
T ss_dssp             --HHHHHHHHHHHHT----TTCCEEEEEECHHHHHH---TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHh----cCCCEEEEEEhhhcccc---ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence              5566778877765    25789999999998542   2233 346678888889999999999999999999999877


Q ss_pred             HH
Q psy38           150 YN  151 (193)
Q Consensus       150 ~~  151 (193)
                      ..
T Consensus       168 ~~  169 (188)
T 2wjg_A          168 KD  169 (188)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.76  E-value=5e-19  Score=125.23  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-------cccchhhhccCccEEEEEEeCCCh
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-------FRSITKSYYRNSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~   69 (193)
                      ||+++|.      ....|+...+.....+.. ++  ..+.+|||+|+..       +...+..+++.+|++|+|+|++++
T Consensus        16 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~   92 (161)
T 2dyk_A           16 SLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE   92 (161)
T ss_dssp             HHHHHHHHCCC-----------CCEEEEEEE-TT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC
T ss_pred             HHHHHHhCCCeeeccCCCCceecceEEEEEe-CC--ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence            5677761      122333445666677777 66  4788999999887       344556788999999999999985


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .+.  ...|+..+...   ...|+++|+||+|+.+.       .+++.+++ ..++ +++++||++|.|++++|.++++.
T Consensus        93 ~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-------~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  159 (161)
T 2dyk_A           93 LTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH-------ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER  159 (161)
T ss_dssp             CCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG-------GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccH--hHHHHHHHHHh---cCCCEEEEEECcccccc-------hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence            332  22333333332   24789999999999652       13344555 5677 89999999999999999999875


Q ss_pred             H
Q psy38           149 I  149 (193)
Q Consensus       149 i  149 (193)
                      +
T Consensus       160 l  160 (161)
T 2dyk_A          160 L  160 (161)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.76  E-value=6.1e-19  Score=126.99  Aligned_cols=132  Identities=18%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             eeeeeccC------CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38             3 TLLYLYIQ------ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~~~------~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+++|..      ...|+.+.++....+.+ ++  ..+.+|||+|++++...        ...+++++|++++|||+++
T Consensus        19 tLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~   95 (172)
T 2gj8_A           19 SLLNALAGREAAIVTDIAGTTRDVLREHIHI-DG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTT   95 (172)
T ss_dssp             HHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTT
T ss_pred             HHHHHHhCCCcceeeCCCCceeceeeEEEEE-CC--eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            56777711      12233446777788888 76  45789999998754221        1246889999999999999


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +.+++ ...|+..+.... ....|+++|+||+|+...   . .      .++...+++++++||++|.||+++|.+|.+.
T Consensus        96 ~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~---~-~------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  163 (172)
T 2gj8_A           96 TDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGE---T-L------GMSEVNGHALIRLSARTGEGVDVLRNHLKQS  163 (172)
T ss_dssp             CCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCC---C-C------EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcc---h-h------hhhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            88876 457888877654 346899999999998542   1 1      1233356789999999999999999999886


Q ss_pred             H
Q psy38           149 I  149 (193)
Q Consensus       149 i  149 (193)
                      +
T Consensus       164 ~  164 (172)
T 2gj8_A          164 M  164 (172)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.75  E-value=1.5e-18  Score=126.74  Aligned_cols=135  Identities=12%  Similarity=0.150  Sum_probs=89.2

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC----------ccccccchhhhccCc---cEEEEEE
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG----------QERFRSITKSYYRNS---VGALLVY   64 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~~~---d~~i~v~   64 (193)
                      ||+++|     ...+.++.|.........+ ++   .+.+|||+|          ++.+..++..+++.+   |++++|+
T Consensus        38 sli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  113 (195)
T 1svi_A           38 SFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIV  113 (195)
T ss_dssp             HHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEE
Confidence            566776     2345666665555555555 44   489999999          777777888888877   9999999


Q ss_pred             eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH--HHHHH-HHHhCCCcEEEecCCCCcCHHHH
Q psy38            65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE--AEAKA-FASQNDILHFETSSRSGFQVENA  141 (193)
Q Consensus        65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~e~  141 (193)
                      |++++.++.+.. ++..+..    ...|+++|+||+|+..   .+.+..  ++..+ ++...+++++++||++|.|++++
T Consensus       114 d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  185 (195)
T 1svi_A          114 DLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIP---KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEA  185 (195)
T ss_dssp             ETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSC---GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHH
T ss_pred             ECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCC---hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHH
Confidence            999877666542 1222222    3478999999999966   232322  23333 44345679999999999999999


Q ss_pred             HHHHHHHH
Q psy38           142 FTAVTQEI  149 (193)
Q Consensus       142 f~~i~~~i  149 (193)
                      |.+|.+.+
T Consensus       186 ~~~l~~~l  193 (195)
T 1svi_A          186 WGAIKKMI  193 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.73  E-value=1.2e-17  Score=121.72  Aligned_cols=137  Identities=19%  Similarity=0.221  Sum_probs=96.4

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC----------ccccccchhhhccCc---cEEEEEE
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG----------QERFRSITKSYYRNS---VGALLVY   64 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~~~~~~~---d~~i~v~   64 (193)
                      +||+++|    ...+.++.|.+........ +.   .+.+|||+|          ++.+..++..+++.+   +++++|+
T Consensus        37 Ssli~~l~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~  112 (195)
T 3pqc_A           37 SSLLNALFNRKIAFVSKTPGKTRSINFYLV-NS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLV  112 (195)
T ss_dssp             HHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-TT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHHHcCccccccCCCCCccCeEEEEE-CC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEe
Confidence            3677777    3455666665554444444 32   367999999          667777788888776   9999999


Q ss_pred             eCCChh--HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHH
Q psy38            65 DITSRA--SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENA  141 (193)
Q Consensus        65 d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~  141 (193)
                      |+++..  ....+..|+...       ..|+++|+||+|+.... ......+++.+++...+ ++++++||++|.||+++
T Consensus       113 d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  184 (195)
T 3pqc_A          113 DGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMS-ERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISEL  184 (195)
T ss_dssp             ETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGG-GHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChH-HHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence            998753  333334444332       47899999999996421 12334456666776644 79999999999999999


Q ss_pred             HHHHHHHHH
Q psy38           142 FTAVTQEIY  150 (193)
Q Consensus       142 f~~i~~~i~  150 (193)
                      |+++.+.+.
T Consensus       185 ~~~l~~~l~  193 (195)
T 3pqc_A          185 LDLISTLLK  193 (195)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.71  E-value=2.2e-17  Score=126.45  Aligned_cols=134  Identities=16%  Similarity=0.121  Sum_probs=97.5

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc------hhhhc--cCccEEEEEEeCCCh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI------TKSYY--RNSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~--~~~d~~i~v~d~~~~   69 (193)
                      ||+|+|     .....|.+..+.....+.. ++  ..+.+|||+|+..+...      .+.++  .++|++|+|+|+++.
T Consensus        20 sL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~   96 (258)
T 3a1s_A           20 SLFNALTGTKQYVANWPGVTVEKKEGVFTY-KG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP   96 (258)
T ss_dssp             HHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC
T ss_pred             HHHHHHHCCCCcccCCCCceEEEEEEEEEE-CC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch
Confidence            566776     1223344444555555554 44  78999999999887653      25565  589999999999986


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ++.   ..|..++...    ..|+++|+||+|+...   +.+.. +...+++.++++++++||++|.|++++|.++.+.+
T Consensus        97 ~~~---~~~~~~l~~~----~~pvilv~NK~Dl~~~---~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A           97 EQS---LYLLLEILEM----EKKVILAMTAIDEAKK---TGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             HHH---HHHHHHHHTT----TCCEEEEEECHHHHHH---TTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhH---HHHHHHHHhc----CCCEEEEEECcCCCCc---cchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            543   3466666653    4789999999998542   23332 36678888899999999999999999999998865


Q ss_pred             H
Q psy38           150 Y  150 (193)
Q Consensus       150 ~  150 (193)
                      .
T Consensus       166 ~  166 (258)
T 3a1s_A          166 Q  166 (258)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.70  E-value=3.8e-17  Score=128.12  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=91.9

Q ss_pred             EEEEEEeeCCCccccc----------cchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            32 RIKLQLWDTAGQERFR----------SITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ...+.||||+|+..+.          .....+++++|++++|+|+++..++.+...|+..+...    ..|+++|+||+|
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~----~~pvilV~NK~D  133 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL----NKPVIVVINKID  133 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG----CCCEEEEEECGG
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc----CCCEEEEEECcc
Confidence            4789999999986544          45567889999999999999988888887788777763    478999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +..   ...........+....+  .+++++||++|.|++++|+++.+.+.
T Consensus       134 l~~---~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          134 KIG---PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             GSS---SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCC---CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            973   24455666777887775  68999999999999999999988663

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.69  E-value=8.5e-18  Score=128.54  Aligned_cols=132  Identities=11%  Similarity=-0.005  Sum_probs=96.4

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc----------chhhhc--cCccEEEEEEe
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS----------ITKSYY--RNSVGALLVYD   65 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~~~~~~--~~~d~~i~v~d   65 (193)
                      ||+|++     .....|+++.+.....+.+ ++  ..+.+|||+|...+..          +.+.++  .++|++|+|+|
T Consensus        16 TL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvD   92 (256)
T 3iby_A           16 TLFNALTNANQRVGNWPGVTVEKKTGEFLL-GE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVID   92 (256)
T ss_dssp             HHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred             HHHHHHHCCCCCccCCCCceEEEEEEEEEE-CC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEee
Confidence            566666     2223455566777778877 66  4789999999987764          456677  89999999999


Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      +++.+++..+..|   +..    ...|+++|+||+|+...   +.+.. ....++...+++++++||++|.|++++|.++
T Consensus        93 as~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~---~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i  161 (256)
T 3iby_A           93 ACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEH---RGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSL  161 (256)
T ss_dssp             GGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHH---TTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHH
T ss_pred             CCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCc---CCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            9987665544333   322    25799999999998542   22211 2345777789999999999999999999999


Q ss_pred             HHH
Q psy38           146 TQE  148 (193)
Q Consensus       146 ~~~  148 (193)
                      .+.
T Consensus       162 ~~~  164 (256)
T 3iby_A          162 LHC  164 (256)
T ss_dssp             HTC
T ss_pred             Hhh
Confidence            875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.68  E-value=1.6e-17  Score=127.98  Aligned_cols=118  Identities=11%  Similarity=0.068  Sum_probs=88.9

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccccc------cchhhhcc--CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQERFR------SITKSYYR--NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR   90 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~   90 (193)
                      ++..+...+ ++ ...+.+|||+|+.++.      .+.+.++.  ++|++|+|+|+++.+++   ..|..++.+.    .
T Consensus        37 tv~~~~~~~-~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~----~  107 (272)
T 3b1v_A           37 TVERKSGLV-KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET----G  107 (272)
T ss_dssp             CCSCEEEEC-TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT----C
T ss_pred             cEEEEEEEE-ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc----C
Confidence            333444455 54 5679999999998876      34566775  69999999999986543   4566666652    4


Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+++|+||+|+...   +.+. .....++..++++++++||++|.|++++|.++++.+
T Consensus       108 ~p~ilv~NK~Dl~~~---~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          108 IPVTIALNMIDVLDG---QGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             SCEEEEEECHHHHHH---TTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             CCEEEEEEChhhCCc---CCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            789999999998542   2233 345678888899999999999999999999998754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.68  E-value=2.7e-16  Score=129.74  Aligned_cols=136  Identities=16%  Similarity=0.099  Sum_probs=82.8

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCCC
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+|+|.      ....|++..++....+.+ +|  +.+.+|||+|+.++...+        ..+++++|++++|+|+++
T Consensus       248 SLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~  324 (476)
T 3gee_A          248 TLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGT  324 (476)
T ss_dssp             HHHHHCC------------------CEEEEE-TT--EEEEEEC--------------------CCCSSCSEEEEEEETTT
T ss_pred             HHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCC
Confidence            6777771      122344446777788888 77  679999999998765443        347889999999999999


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +.+++.+..+..-+. ...  ..|+++|+||+|+...   ..+   ...++......+++++||++|.||+++|.+|.+.
T Consensus       325 ~~s~~~~~~~~~~l~-~l~--~~piIvV~NK~Dl~~~---~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~  395 (476)
T 3gee_A          325 ERLDDELTEIRELKA-AHP--AAKFLTVANKLDRAAN---ADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL  395 (476)
T ss_dssp             CSSGGGHHHHHHHHH-HCT--TSEEEEEEECTTSCTT---THH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred             CcchhhhHHHHHHHH-hcC--CCCEEEEEECcCCCCc---cch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHH
Confidence            888765433333222 222  5899999999999662   222   2233444323689999999999999999999987


Q ss_pred             HH
Q psy38           149 IY  150 (193)
Q Consensus       149 i~  150 (193)
                      +.
T Consensus       396 ~~  397 (476)
T 3gee_A          396 VK  397 (476)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.68  E-value=4.9e-17  Score=133.89  Aligned_cols=140  Identities=15%  Similarity=0.054  Sum_probs=98.5

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC----------ccccccchh-hhccCccEEEEEEe
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG----------QERFRSITK-SYYRNSVGALLVYD   65 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~~-~~~~~~d~~i~v~d   65 (193)
                      ||+++|      .....|+++.+.....+.. ++.  .+.+|||+|          ++.|..++. .+++.+|++|+|+|
T Consensus       210 slin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD  286 (456)
T 4dcu_A          210 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLD  286 (456)
T ss_dssp             HHHHHHHTSTTEEECC------CTTSEEEEE-TTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEe
Confidence            567776      1223344446776677777 664  788999999          677766655 37889999999999


Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-----CCcEEEecCCCCcCHHH
Q psy38            66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-----DILHFETSSRSGFQVEN  140 (193)
Q Consensus        66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e  140 (193)
                      +++..+. ....|+..+..    ...|+++|+||+|+.+   .+.+..++..+.+...     +++++++||++|.||++
T Consensus       287 ~~~~~~~-~~~~~~~~~~~----~~~~~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  358 (456)
T 4dcu_A          287 GEEGIIE-QDKRIAGYAHE----AGKAVVIVVNKWDAVD---KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHT  358 (456)
T ss_dssp             TTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSC---CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGG
T ss_pred             CCCCcCH-HHHHHHHHHHH----cCCCEEEEEEChhcCC---CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHH
Confidence            9874332 22345555544    2489999999999976   3556666666666553     57999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy38           141 AFTAVTQEIYNRV  153 (193)
Q Consensus       141 ~f~~i~~~i~~~~  153 (193)
                      +|.++.+.+....
T Consensus       359 l~~~i~~~~~~~~  371 (456)
T 4dcu_A          359 LMPAIIKASENHS  371 (456)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998776543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.67  E-value=7.1e-18  Score=125.43  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=78.7

Q ss_pred             cEEEEEEeeCCCccccccchhhhccC----ccEEEEEEeCC-ChhHHhhHHHHHHHHHHhc---CCCCCeEEEEeeCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRN----SVGALLVYDIT-SRASFEHIPVWMMEAKRHI---EPHRPVFALVGCKLDL  102 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl  102 (193)
                      ..+.+.+|||+|++.++..+..+++.    +|++|+|||++ ++.+|..+..|+..+....   .....|+++|+||+|+
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence            44678999999999999888888887    89999999999 8889999999998887753   2356899999999999


Q ss_pred             CCCCCCCccC------HHHHHHHHHhCCCcEEEecCCCCcC
Q psy38           103 LQSGVPREVS------EAEAKAFASQNDILHFETSSRSGFQ  137 (193)
Q Consensus       103 ~~~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~~~  137 (193)
                      ...   +.+.      .+++..++...++.++++||++|.+
T Consensus       133 ~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          133 FTA---RPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             TTC---CCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             ccc---CCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            763   3333      4556677777778999999998765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.65  E-value=1.8e-16  Score=128.96  Aligned_cols=135  Identities=12%  Similarity=0.083  Sum_probs=97.2

Q ss_pred             eeeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc-------hhhhccCccEEEEEEeCCC
Q psy38             2 VTLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI-------TKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         2 ~sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~   68 (193)
                      +||+++|.      ....+.+..+.....+.+ .+. ..+.+|||+|++.+..+       ...++.++|++|+|+|++.
T Consensus        48 STLin~L~~~~~~~~~~~~gtT~d~~~~~~~~-~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~  125 (423)
T 3qq5_A           48 SSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL-HPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP  125 (423)
T ss_dssp             TTTTTSSCC-------------CCCCEEEEEE-TTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC
T ss_pred             HHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE-CCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence            36777771      122233335666677776 443 37899999999887655       3458889999999999843


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .+   ....|+..+...    +.|+++|+||+|+...   ...  +...+++...+++++++||++|.|++++|++|.+.
T Consensus       126 ~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~---~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~  193 (423)
T 3qq5_A          126 TP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGE---KAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI  193 (423)
T ss_dssp             CH---HHHHHHHHHHHT----TCCEEEECCCCTTTTC---CCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred             hH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCc---cHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            32   335577777664    4789999999999763   222  56667777788999999999999999999999987


Q ss_pred             HH
Q psy38           149 IY  150 (193)
Q Consensus       149 i~  150 (193)
                      +.
T Consensus       194 l~  195 (423)
T 3qq5_A          194 LP  195 (423)
T ss_dssp             SC
T ss_pred             hh
Confidence            73

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.65  E-value=1.3e-16  Score=130.74  Aligned_cols=139  Identities=15%  Similarity=0.075  Sum_probs=95.1

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCc----------cccccchh-hhccCccEEEEEEe
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQ----------ERFRSITK-SYYRNSVGALLVYD   65 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~-~~~~~~d~~i~v~d   65 (193)
                      ||+|++.      ....|+++.+.....+.. ++.  .+.+|||+|+          +.|..++. .+++.+|++++|+|
T Consensus       190 SLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D  266 (436)
T 2hjg_A          190 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLD  266 (436)
T ss_dssp             HHHHHHHTSTTEEEC---------CCEEEEE-TTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEc
Confidence            6777771      222344446777777777 764  4889999998          44444433 47889999999999


Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH-----HHHHhCCCcEEEecCCCCcCHHH
Q psy38            66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK-----AFASQNDILHFETSSRSGFQVEN  140 (193)
Q Consensus        66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~e  140 (193)
                      ++++.++++. .|+..+...    ..|+++|+||+|+.+.   +....++..     .++...+++++++||++|.|+++
T Consensus       267 ~~~~~s~~~~-~~~~~~~~~----~~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~  338 (436)
T 2hjg_A          267 GEEGIIEQDK-RIAGYAHEA----GKAVVIVVNKWDAVDK---DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHT  338 (436)
T ss_dssp             TTTCCCHHHH-HHHHHHHHT----TCEEEEEEECGGGSCC---CTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGG
T ss_pred             CCcCCcHHHH-HHHHHHHHc----CCcEEEEEECccCCCc---chHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHH
Confidence            9998887775 577666542    4899999999999762   333333322     22333467999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy38           141 AFTAVTQEIYNR  152 (193)
Q Consensus       141 ~f~~i~~~i~~~  152 (193)
                      +|.++.+.+...
T Consensus       339 l~~~i~~~~~~~  350 (436)
T 2hjg_A          339 LMPAIIKASENH  350 (436)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999877653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.64  E-value=4.9e-17  Score=125.50  Aligned_cols=133  Identities=14%  Similarity=0.044  Sum_probs=93.9

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc----------hhhhc--cCccEEEEEEe
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI----------TKSYY--RNSVGALLVYD   65 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~~--~~~d~~i~v~d   65 (193)
                      ||+|+|     .....|++..+.....+.. ++  ..+.+|||+|+..+...          ...++  .++|++|+|+|
T Consensus        18 TLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD   94 (274)
T 3i8s_A           18 TLFNQLTGSRQRVGNWAGVTVERKEGQFST-TD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVD   94 (274)
T ss_dssp             HHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred             HHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEec
Confidence            567776     2233455556777777776 55  45778999999876631          23333  79999999999


Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      +++.++...   |...+...    +.|+++|+||+|+...   +.+. .....++...+++++++||++|.|++++|.++
T Consensus        95 ~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~---~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i  163 (274)
T 3i8s_A           95 ASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEK---QNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAI  163 (274)
T ss_dssp             GGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHH---TTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHH
T ss_pred             CCChHHHHH---HHHHHHhc----CCCEEEEEECccchhh---hhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence            998665444   44444443    4789999999998542   2221 12456777788999999999999999999998


Q ss_pred             HHHH
Q psy38           146 TQEI  149 (193)
Q Consensus       146 ~~~i  149 (193)
                      .+.+
T Consensus       164 ~~~~  167 (274)
T 3i8s_A          164 DRYK  167 (274)
T ss_dssp             HTCC
T ss_pred             HHHH
Confidence            7654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.64  E-value=1.3e-16  Score=118.96  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=87.7

Q ss_pred             eeeeeccC-----CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCc----------cccccchhhhccC---ccEEEEEE
Q psy38             3 TLLYLYIQ-----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQ----------ERFRSITKSYYRN---SVGALLVY   64 (193)
Q Consensus         3 sll~r~~~-----~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~~~~---~d~~i~v~   64 (193)
                      ||+|+|..     ...++.|.........+.......+.||||+|.          +.+..+...++..   +|++++|+
T Consensus        44 slin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~  123 (223)
T 4dhe_A           44 TAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMM  123 (223)
T ss_dssp             HHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEE
Confidence            56777611     222333333333334441144567899999994          4445566677766   78899999


Q ss_pred             eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC--HHHHHH-HHH------hCCCcEEEecCCCC
Q psy38            65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS--EAEAKA-FAS------QNDILHFETSSRSG  135 (193)
Q Consensus        65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~--~~~~~~-~~~------~~~~~~~~~Sa~~~  135 (193)
                      |+++..+.. ...|+..+..    ...|+++|+||+|+...   ..+.  .+...+ +..      ..+++++++||++|
T Consensus       124 d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g  195 (223)
T 4dhe_A          124 DARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTR---QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKR  195 (223)
T ss_dssp             ETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCH---HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTT
T ss_pred             eCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCCh---hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCC
Confidence            998743211 2334444443    34789999999998651   2211  111222 222      14568999999999


Q ss_pred             cCHHHHHHHHHHHHHHH
Q psy38           136 FQVENAFTAVTQEIYNR  152 (193)
Q Consensus       136 ~~i~e~f~~i~~~i~~~  152 (193)
                      .|++++|.+|.+.+...
T Consensus       196 ~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          196 TGLDDAHALIESWLRPA  212 (223)
T ss_dssp             BSHHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHhcCcc
Confidence            99999999999877544

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.63  E-value=3.4e-16  Score=120.52  Aligned_cols=136  Identities=16%  Similarity=0.098  Sum_probs=100.8

Q ss_pred             eeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc------chhhhc--cCccEEEEEEeCCCh
Q psy38             3 TLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS------ITKSYY--RNSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~   69 (193)
                      ||+|++     .....|+++.+.....+.+ ++  ..+.+|||+|+..+..      ....++  .++|++++|+|+++.
T Consensus        18 TL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~   94 (271)
T 3k53_A           18 TIFNALTGLRQHVGNWPGVTVEKKEGIMEY-RE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL   94 (271)
T ss_dssp             HHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH
T ss_pred             HHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc
Confidence            566666     2345566667787777777 66  4589999999988766      456666  689999999999875


Q ss_pred             hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            70 ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        70 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +   ....|+.++....   ..|+++|+||+|+...   +.+... ...+++..+++++++||++|.|++++|.++.+.+
T Consensus        95 ~---~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~---~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~  164 (271)
T 3k53_A           95 M---RNLFLTLELFEME---VKNIILVLNKFDLLKK---KGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA  164 (271)
T ss_dssp             H---HHHHHHHHHHHTT---CCSEEEEEECHHHHHH---HTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             h---hhHHHHHHHHhcC---CCCEEEEEEChhcCcc---cccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3   3445555565532   2789999999998541   222222 5677888899999999999999999999999876


Q ss_pred             HH
Q psy38           150 YN  151 (193)
Q Consensus       150 ~~  151 (193)
                      ..
T Consensus       165 ~~  166 (271)
T 3k53_A          165 EG  166 (271)
T ss_dssp             HT
T ss_pred             hc
Confidence            43

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.62  E-value=2.7e-15  Score=123.90  Aligned_cols=133  Identities=21%  Similarity=0.185  Sum_probs=97.0

Q ss_pred             eeeeeec-------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc-cccc--------chhhhccCccEEEEEEe
Q psy38             2 VTLLYLY-------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE-RFRS--------ITKSYYRNSVGALLVYD   65 (193)
Q Consensus         2 ~sll~r~-------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~-~~~~--------~~~~~~~~~d~~i~v~d   65 (193)
                      .||+|++       ...+..| ..++....+.+ +|  ..+.+|||+|.. .+..        ....+++.+|++|+|+|
T Consensus       257 SSLln~L~~~~~a~vs~~~gT-T~d~~~~~i~~-~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD  332 (482)
T 1xzp_A          257 STLLNRLLNEDRAIVTDIPGT-TRDVISEEIVI-RG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLD  332 (482)
T ss_dssp             CHHHHHHHHHTBCCCCCSSCC-SSCSCCEEEEE-TT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHHHCCCCCccCCCCCe-eeeeEEEEEec-CC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEec
Confidence            3677777       2233333 46788888888 77  568999999987 5542        23467889999999999


Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            66 ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        66 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      ++++.++++.. +++.+      ...|+++|+||+|+...     +..++..+++. .+++++++||++|.|++++|.+|
T Consensus       333 ~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~-----~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l  399 (482)
T 1xzp_A          333 ASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK-----INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESI  399 (482)
T ss_dssp             TTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC-----CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHH
T ss_pred             CCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc-----cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHH
Confidence            99887776542 22222      24789999999999652     34455545443 45789999999999999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      .+.+..
T Consensus       400 ~~~~~~  405 (482)
T 1xzp_A          400 YRETQE  405 (482)
T ss_dssp             HHHTHH
T ss_pred             HHHHhh
Confidence            998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.61  E-value=6.2e-15  Score=117.76  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=88.8

Q ss_pred             EEEEEeeCCCcccccc---------chhhhccCccEEEEEEeCCChh--HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            33 IKLQLWDTAGQERFRS---------ITKSYYRNSVGALLVYDITSRA--SFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ..+.+|||+|......         ....+...+|++++|+|+++..  +++....|+..+.....  ..|+++|+||+|
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~D  291 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKID  291 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTT
T ss_pred             ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcc
Confidence            6789999999855321         1123455799999999998876  67888889998887643  578999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +...   ..  .+++.+++...+++++++||++|.|++++|.++.+.+...
T Consensus       292 l~~~---~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          292 VADE---EN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TCCH---HH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             cCCh---HH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            9652   22  2456667777889999999999999999999999988654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.60  E-value=1.5e-15  Score=120.49  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=91.7

Q ss_pred             EEEecCCcEEEEEEeeCCCccc----cccchhhhcc---CccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcC-CCCCe
Q psy38            24 LVTMRDGARIKLQLWDTAGQER----FRSITKSYYR---NSVGALLVYDITS---RASFEHIPVWMMEAKRHIE-PHRPV   92 (193)
Q Consensus        24 ~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~~~---~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p   92 (193)
                      .+.+ ++ ...+.+|||+|..+    +..+...|++   .++++|+|+|+++   +.+++++..|+.++..+.. ....|
T Consensus       199 ~v~~-~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p  276 (342)
T 1lnz_A          199 MVET-DD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP  276 (342)
T ss_dssp             EEEC-SS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC
T ss_pred             EEEe-CC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC
Confidence            4555 32 24688999999643    4445566655   4999999999998   7899999999999988643 24688


Q ss_pred             EEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            93 FALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        93 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      +++|+||+|+..       ..+...+++....  ++++++||+++.|++++|.+|.+.+.+
T Consensus       277 ~ilV~NK~Dl~~-------~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          277 QIIVANKMDMPE-------AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             BCBEEECTTSTT-------HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             EEEEEECccCCC-------CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            999999999854       1234556666665  689999999999999999999987743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.59  E-value=4.3e-15  Score=121.76  Aligned_cols=134  Identities=18%  Similarity=0.163  Sum_probs=89.6

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCC
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~   67 (193)
                      ||+|||.      ....|.+..++....+.+ +|.  .+.+|||+|.+.         +......+++++|++++|+|++
T Consensus        16 tL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~   92 (439)
T 1mky_A           16 TLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGK   92 (439)
T ss_dssp             HHHHHHHC--------------CCSEEEEEE-TTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             HHHHHHhCCCCceecCCCCCccceeeEEEEE-CCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence            6778871      123344455777778888 774  578999999764         2344577899999999999998


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH-HHHHHhCCC-cEEEecCCCCcCHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEA-KAFASQNDI-LHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      +..+..+  .|+..+....   ..|+++|+||+|+..    . . ..+. .+++ ..++ +++++||++|.|++++|+++
T Consensus        93 ~~~~~~d--~~i~~~l~~~---~~p~ilv~NK~D~~~----~-~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i  160 (439)
T 1mky_A           93 RGITKED--ESLADFLRKS---TVDTILVANKAENLR----E-F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI  160 (439)
T ss_dssp             TCCCHHH--HHHHHHHHHH---TCCEEEEEESCCSHH----H-H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred             CCCCHHH--HHHHHHHHHc---CCCEEEEEeCCCCcc----c-c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence            7544332  2333333322   468899999999743    1 1 2223 4454 4566 78999999999999999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      .+.+.+
T Consensus       161 ~~~l~~  166 (439)
T 1mky_A          161 IKKLEE  166 (439)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            988764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.57  E-value=5.6e-15  Score=115.37  Aligned_cols=108  Identities=19%  Similarity=0.091  Sum_probs=76.7

Q ss_pred             cEEEEEEeeCCCccc--------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHH-HHHHhcCCCCCeEEEEeeCCC
Q psy38            31 ARIKLQLWDTAGQER--------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM-EAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~~piilv~nK~D  101 (193)
                      ....+.||||+|..+        +......+++++|++++|+|++++.+..  ..|+. .+... . ...|+++|+||+|
T Consensus        53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~-~~~p~ilV~NK~D  128 (301)
T 1wf3_A           53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-V-GKVPILLVGNKLD  128 (301)
T ss_dssp             TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-T-TTSCEEEEEECGG
T ss_pred             CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-c-CCCCEEEEEECcc
Confidence            347899999999876        3445567899999999999998764333  34553 34332 1 3578999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHh-CC-CcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQ-ND-ILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +...   ..    ...+.+.. .+ .+++++||++|.|++++|+++...+
T Consensus       129 l~~~---~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          129 AAKY---PE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             GCSS---HH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             cCCc---hH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            8651   11    01222222 23 4789999999999999999998754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.57  E-value=1.6e-14  Score=117.38  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=75.8

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ..+.||||+|+++|.......+..+|++|+|+|+++    +++++.+..|    ...   ...|+++|+||+|+.... .
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~-~  152 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEK-Q  152 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTT-T
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHH-H
Confidence            789999999999998777777888999999999985    4455444322    221   235788999999996531 1


Q ss_pred             CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .....++..+++..   .+++++++||++|.|++++|++|.+.+
T Consensus       153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            12334566677665   357999999999999999999998754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.56  E-value=3.4e-14  Score=120.01  Aligned_cols=112  Identities=21%  Similarity=0.240  Sum_probs=90.9

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ++..+.+.||||+|+.+|...+..++..+|++|+|+|+++..+++....|...+..     +.|+++|+||+|+...   
T Consensus        67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a---  138 (599)
T 3cb4_D           67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA---  138 (599)
T ss_dssp             TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---
T ss_pred             CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc---
Confidence            56678999999999999999899999999999999999987777777777665432     4789999999999652   


Q ss_pred             CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .  ......++....++   .++++||++|.|++++|+++++.+.
T Consensus       139 ~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          139 D--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             C--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             c--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            1  23334556666665   4999999999999999999987653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.55  E-value=5.7e-14  Score=118.52  Aligned_cols=112  Identities=22%  Similarity=0.276  Sum_probs=91.0

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ++..+.+.||||+|+.+|......++..+|++|+|+|+++..+++....|......     +.|+++|+||+|+...   
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a---  140 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA---  140 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc---
Confidence            56678999999999999988888999999999999999998777777777665432     4789999999999652   


Q ss_pred             CccCHHHHHHHHHhCCC---cEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQNDI---LHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       109 ~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .  ......++....++   .++++||++|.||+++|+++++.+.
T Consensus       141 ~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          141 D--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             C--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             C--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            1  23334556666666   4899999999999999999987653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.54  E-value=2.1e-14  Score=112.24  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=85.8

Q ss_pred             CcEEEEEEee-CC-----CccccccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            30 GARIKLQLWD-TA-----GQERFRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        30 ~~~~~l~l~D-~~-----g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      |+.+.+..|| +.     .++++..+.+.+++++|++++|+|+++++ +++.+.+|+..+..    .+.|+++|+||+||
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL  122 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDL  122 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccC
Confidence            3445555555 22     26778888899999999999999999986 89988999987765    24788899999999


Q ss_pred             CCCCCCCccC-HHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38           103 LQSGVPREVS-EAEAKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus       103 ~~~~~~~~v~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .++   ..+. .++..+++...+++++++||++|.|++++|..+.
T Consensus       123 ~~~---~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          123 LNE---EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CCH---HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCc---cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            651   2222 4555667777889999999999999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.53  E-value=3.8e-15  Score=122.49  Aligned_cols=132  Identities=19%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCCC
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+|++      .....|+++.++....+.+ +|  ..+.+|||+|..++....        ..+++++|++++|+|+++
T Consensus       239 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~  315 (462)
T 3geh_A          239 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT  315 (462)
T ss_dssp             HHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TT--EEEEECC--------------------CCCCSCSEEEEEEETTT
T ss_pred             HHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence            677776      1233355556777777777 77  567899999986654433        336889999999999998


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +.+... ..|+..+..      .|+++|+||+|+...   ..+.  ...++.  .+.+++++||++|.|++++|.+|.+.
T Consensus       316 ~~~~~~-~~i~~~l~~------~piivV~NK~Dl~~~---~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~  381 (462)
T 3geh_A          316 GWTTGD-QEIYEQVKH------RPLILVMNKIDLVEK---QLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEI  381 (462)
T ss_dssp             CSCHHH-HHHHHHHTT------SCEEEEEECTTSSCG---GGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             CCCHHH-HHHHHhccC------CcEEEEEECCCCCcc---hhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            655543 445544432      589999999999663   2222  111111  35689999999999999999999987


Q ss_pred             HHH
Q psy38           149 IYN  151 (193)
Q Consensus       149 i~~  151 (193)
                      +..
T Consensus       382 ~~~  384 (462)
T 3geh_A          382 VQT  384 (462)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.53  E-value=4.4e-16  Score=129.81  Aligned_cols=139  Identities=18%  Similarity=0.155  Sum_probs=96.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||+++|     ...+.|+++.++....+..+++  ..+.||||||++.|..++..++..+|++|+|+|+++....+...
T Consensus        18 TSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e   95 (537)
T 3izy_P           18 TTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE   95 (537)
T ss_dssp             HHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHH
T ss_pred             HHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHH
Confidence            3677777     4456677767776666655334  36889999999999999999999999999999999854443332


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH---HHhC--CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF---ASQN--DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      . +..+..    ...|+++|+||+|+.+..... +... ...+   +..+  .++++++||++|.|++++|+++...+
T Consensus        96 ~-l~~~~~----~~vPiIVViNKiDl~~~~~~~-v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P           96 S-IQHAKD----AHVPIVLAINKCDKAEADPEK-VKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             H-HHHHHT----TTCCEEECCBSGGGTTTSCCS-SSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             H-HHHHHH----cCCcEEEEEecccccccchHH-HHHH-HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            2 222222    347899999999997532111 2111 1111   1222  24899999999999999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.52  E-value=2.6e-15  Score=122.94  Aligned_cols=134  Identities=16%  Similarity=0.141  Sum_probs=80.1

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcc--------ccccchhhhccCccEEEEEEeCCChh
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQE--------RFRSITKSYYRNSVGALLVYDITSRA   70 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~   70 (193)
                      ||+||+    .....++.|.+.......+ ......+.+|||+|++        .+...+..+++++|++|+|+|+++..
T Consensus        18 tL~n~l~~~~~~~v~~~~g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~   96 (436)
T 2hjg_A           18 TIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV   96 (436)
T ss_dssp             HHHHHHEEEECC-----------CEEEEC-TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred             HHHHHHhCCCceeecCCCCCccceEEEEE-EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC
Confidence            567777    2223444444333333333 3233578999999985        56667788999999999999998865


Q ss_pred             HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38            71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ++.+  .|+..+..   ....|+++|+||+|+...   .    ....++. ..++ .++++||++|.|++++|+++.+.+
T Consensus        97 ~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~---~----~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A           97 TAAD--EEVAKILY---RTKKPVVLAVNKLDNTEM---R----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  163 (436)
T ss_dssp             CHHH--HHHHHHHT---TCCSCEEEEEECCCC------------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred             CHHH--HHHHHHHH---HcCCCEEEEEECccCccc---h----hhHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence            5443  34444443   235789999999998652   1    1111233 3455 789999999999999999998876


Q ss_pred             H
Q psy38           150 Y  150 (193)
Q Consensus       150 ~  150 (193)
                      .
T Consensus       164 ~  164 (436)
T 2hjg_A          164 K  164 (436)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.52  E-value=5.4e-14  Score=114.01  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=86.6

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc-
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV-  111 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v-  111 (193)
                      ..+.||||+|+++|......++..+|++|+|+|+++..++.....|+..+....   ..|+++|+||+|+.+.   ... 
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~---~~~~  148 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSK---EEAL  148 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCH---HHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccch---HHHH
Confidence            789999999999999999999999999999999998776777777777665543   2588899999999652   111 


Q ss_pred             -CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           112 -SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       112 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                       ..++..++....   +++++++||++|.|++++|++|.+.+
T Consensus       149 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          149 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence             112333333332   56899999999999999999998754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.51  E-value=5.9e-14  Score=114.02  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCC----hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS----RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP  108 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~  108 (193)
                      ..+.||||+|+++|.......+..+|++|+|+|+++    +++++.+..|    ...   ...|+++|+||+|+.... .
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~-~  154 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKE-K  154 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHH-H
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHH-H
Confidence            789999999999988777777888999999999985    3444444322    222   125788999999996520 0


Q ss_pred             CccCHHHHHHHHHh---CCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38           109 REVSEAEAKAFASQ---NDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       109 ~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .....++..+++..   .+++++++||++|.|++++|++|.+.+
T Consensus       155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            01123445556554   457999999999999999999988754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.50  E-value=2.6e-15  Score=120.09  Aligned_cols=132  Identities=17%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCc-------cccccchh-------hhccCccEE-----------EEEEeCCC
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQ-------ERFRSITK-------SYYRNSVGA-----------LLVYDITS   68 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~-------~~~~~~~~-------~~~~~~d~~-----------i~v~d~~~   68 (193)
                      ||++.++....+.. ++..+.+.+|||+|.       +.+..++.       .|+.+++++           +++|++++
T Consensus        77 ~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~  155 (361)
T 2qag_A           77 RTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP  155 (361)
T ss_dssp             -CEEEEEEEEC-----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred             CceeEEEEEEEeec-CCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence            67776666666665 677789999999999       67777766       666655443           35666654


Q ss_pred             -hhHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH--HHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38            69 -RASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE--AEAKAFASQNDILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus        69 -~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~  144 (193)
                       ..++..+. .|+..+     ....|+|+|+||+|+..   .+.+..  +.+.+++...+++++++||+++.+ ++.|.+
T Consensus       156 ~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~---~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~  226 (361)
T 2qag_A          156 FGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKE  226 (361)
T ss_dssp             SSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC---HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHH
T ss_pred             CCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC---HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHH
Confidence             45566654 344433     24578999999999965   233433  567777888899999999999999 999999


Q ss_pred             HHHHHHHHhcC
Q psy38           145 VTQEIYNRVQS  155 (193)
Q Consensus       145 i~~~i~~~~~~  155 (193)
                      +++.+.+..+.
T Consensus       227 l~~~i~~~ip~  237 (361)
T 2qag_A          227 QTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHTCSC
T ss_pred             HHHHHHhcCCC
Confidence            99999876654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.49  E-value=7e-15  Score=107.64  Aligned_cols=109  Identities=7%  Similarity=-0.026  Sum_probs=68.8

Q ss_pred             CCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC----CCCCeEEEEeeCC-CCCCCCCCCccCHH
Q psy38            40 TAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE----PHRPVFALVGCKL-DLLQSGVPREVSEA  114 (193)
Q Consensus        40 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~-Dl~~~~~~~~v~~~  114 (193)
                      .+||.+++.+|+.||.++|++|||+|.+|.+.++ ...-+.++.....    ..+.|++|++||. |+....+..++...
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            4589999999999999999999999999976544 4443333322221    2568999999995 77553222222211


Q ss_pred             HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           115 EAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       115 ~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ....-. ...+.++.|||.+|+|+.|.++||+..+.
T Consensus       188 L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          188 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            111111 24568889999999999999999987653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.47  E-value=1.8e-13  Score=113.26  Aligned_cols=127  Identities=16%  Similarity=0.130  Sum_probs=86.5

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCC
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEP   88 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~   88 (193)
                      ..+.+.++.....+.+ ++  ..+.||||+|+++|......++..+|++|+|+|+++   +++++.+.    .+...   
T Consensus        55 ~~~GiTi~~~~~~~~~-~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---  124 (482)
T 1wb1_A           55 QKRGITIDIGFSAFKL-EN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---  124 (482)
T ss_dssp             ---------CCCEEEE-TT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---
T ss_pred             ccCccEEecceEEEEE-CC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---
Confidence            3333333444445566 55  679999999999998888899999999999999987   44444432    22221   


Q ss_pred             CCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC----CCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            89 HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN----DILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        89 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                       ..|+++|+||+|+.+.. ......++..+++...    +++++++||++|.|+++++++|.+.+-
T Consensus       125 -~ip~IvviNK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          125 -NIPIIVVITKSDNAGTE-EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             -TCCBCEEEECTTSSCHH-HHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -CCCEEEEEECCCcccch-hHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             35678999999996410 0111234455555555    578999999999999999999998775

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.46  E-value=1.3e-13  Score=112.92  Aligned_cols=127  Identities=16%  Similarity=0.100  Sum_probs=84.8

Q ss_pred             CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHh---hHHHHHHHHHH
Q psy38            11 ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFE---HIPVWMMEAKR   84 (193)
Q Consensus        11 ~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~   84 (193)
                      +..+.++++.....+.. ++  ..+.||||+|+++|......++..+|++|+|+|+++..   +|+   .....+..+..
T Consensus        76 er~~GiTid~~~~~~~~-~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~  152 (439)
T 3j2k_7           76 ERDKGKTVEVGRAYFET-EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT  152 (439)
T ss_pred             HhhcCceEEEeEEEEec-CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH
Confidence            34455666777666666 44  58999999999999998999999999999999998753   222   12222222222


Q ss_pred             hcCCCCCeEEEEeeCCCCCCCCCC---CccCHHHHHHHHHhCC------CcEEEecCCCCcCHHHHHH
Q psy38            85 HIEPHRPVFALVGCKLDLLQSGVP---REVSEAEAKAFASQND------ILHFETSSRSGFQVENAFT  143 (193)
Q Consensus        85 ~~~~~~~piilv~nK~Dl~~~~~~---~~v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~e~f~  143 (193)
                         ...+++++|+||+|+......   .....++...++...+      ++++++||++|.|++++++
T Consensus       153 ---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          153 ---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence               223348899999998531000   0111233444555544      4799999999999999766

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.46  E-value=1.4e-13  Score=114.06  Aligned_cols=107  Identities=16%  Similarity=0.022  Sum_probs=71.3

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh-----HHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH-----IPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      .....+.||||+|+++|......++.++|++|+|+|+++..++..     ...+...+...  ....|+++|+||+|+.+
T Consensus       108 ~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~  185 (483)
T 3p26_A          108 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVD  185 (483)
T ss_dssp             CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGT
T ss_pred             cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCccc
Confidence            345789999999999999999999999999999999998654322     11122222222  22356889999999965


Q ss_pred             CCCCCccCHHH----HHHHHHhC-----CCcEEEecCCCCcCHHHH
Q psy38           105 SGVPREVSEAE----AKAFASQN-----DILHFETSSRSGFQVENA  141 (193)
Q Consensus       105 ~~~~~~v~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~i~e~  141 (193)
                         .+....++    ...+....     +++++++||++|.|++++
T Consensus       186 ---~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          186 ---WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             ---chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence               12222222    22333332     468999999999999863

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.46  E-value=1.1e-13  Score=110.96  Aligned_cols=133  Identities=10%  Similarity=-0.066  Sum_probs=92.0

Q ss_pred             eeeeeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHH
Q psy38             3 TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEA   82 (193)
Q Consensus         3 sll~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i   82 (193)
                      ||++++. +...|++  .....+.. ++  ..+.||||+|+++|.......+..+|++|+|+| +. ..+.....|+..+
T Consensus        36 TL~~~L~-~~giTi~--~~~~~~~~-~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~  107 (370)
T 2elf_A           36 SLAANLG-KKGTSSD--ITMYNNDK-EG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIAL  107 (370)
T ss_dssp             HHHHTTS-EEEEESS--SEEEEECS-SS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHH
T ss_pred             HHHHHHH-hCCEEEE--eeEEEEec-CC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHH
Confidence            4455554 3344544  33334444 33  569999999999998877888899999999999 43 3455556666655


Q ss_pred             HHhcCCCCCeE-EEEee-CCCCCCCCCCCccCH--HHHHHHHHhCC---CcEEE--ecCCC---CcCHHHHHHHHHHHHH
Q psy38            83 KRHIEPHRPVF-ALVGC-KLDLLQSGVPREVSE--AEAKAFASQND---ILHFE--TSSRS---GFQVENAFTAVTQEIY  150 (193)
Q Consensus        83 ~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~~v~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~e~f~~i~~~i~  150 (193)
                      ...    ..|. ++++| |+|+ +   ...+..  ++..++++..+   +++++  +||++   +.|++++|+.|.+.+-
T Consensus       108 ~~~----~i~~~ivvvNNK~Dl-~---~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          108 DLL----GFKHGIIALTRSDST-H---MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             HHT----TCCEEEEEECCGGGS-C---HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             HHc----CCCeEEEEEEeccCC-C---HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            543    2444 78888 9999 5   222222  45566665543   68999  99999   9999999999988765


Q ss_pred             H
Q psy38           151 N  151 (193)
Q Consensus       151 ~  151 (193)
                      .
T Consensus       180 ~  180 (370)
T 2elf_A          180 K  180 (370)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.45  E-value=1.9e-13  Score=104.39  Aligned_cols=142  Identities=10%  Similarity=-0.033  Sum_probs=86.8

Q ss_pred             eeeeec------cCCCCCc-ceeeEEEEEEEecCCcEEEEEEeeCCCccccccc-----------hhhhccCccEEEEEE
Q psy38             3 TLLYLY------IQISDPT-VGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI-----------TKSYYRNSVGALLVY   64 (193)
Q Consensus         3 sll~r~------~~~~~pt-~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~   64 (193)
                      ||++++      ...+.|+ +..+.....+.. ++  ..+.||||+|...+...           ...+++.+|++|+|+
T Consensus        37 tl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~  113 (260)
T 2xtp_A           37 AAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVT  113 (260)
T ss_dssp             HHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence            566666      2234444 344555556666 55  56899999998765322           223778999999999


Q ss_pred             eCCChhHH-hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH-------HHHHHHHHhCCCc---E--EEec
Q psy38            65 DITSRASF-EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE-------AEAKAFASQNDIL---H--FETS  131 (193)
Q Consensus        65 d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~-------~~~~~~~~~~~~~---~--~~~S  131 (193)
                      |+++.... ..+..|+..+.... ...++++++.||.|+...    .+..       .++..++...+..   +  +++|
T Consensus       114 d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~S  188 (260)
T 2xtp_A          114 QLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG----SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEG  188 (260)
T ss_dssp             ETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC----CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCH
T ss_pred             eCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc----cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccc
Confidence            99862221 12223333332110 123455555559999642    1222       3344455555432   2  7899


Q ss_pred             CCCCcCHHHHHHHHHHHHHHH
Q psy38           132 SRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       132 a~~~~~i~e~f~~i~~~i~~~  152 (193)
                      |+++.|++++|.+|.+.+...
T Consensus       189 A~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          189 SNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHHHhC
Confidence            999999999999999987663

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.43  E-value=6.1e-15  Score=122.03  Aligned_cols=137  Identities=15%  Similarity=0.115  Sum_probs=88.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++++     ...+.+++..++....+.. ++  ..+.||||||++.|..++..++..+|++|+|+|+++....+.. 
T Consensus        18 TTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~-   93 (501)
T 1zo1_I           18 TSLLEYIRSTKVASGEAGGITQHIGAYHVET-EN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI-   93 (501)
T ss_dssp             HHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTH-
T ss_pred             HHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHH-
Confidence            3566666     2333344444444444444 44  4578999999999999999999999999999999874222222 


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHH--HHHHHHHhCC--CcEEEecCCCCcCHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEA--EAKAFASQND--ILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      .++..+..    ...|+++++||+|+......+ +...  +...++..++  ++++++||++|.|++++|+++..
T Consensus        94 e~l~~~~~----~~vPiIVviNKiDl~~~~~~~-v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I           94 EAIQHAKA----AQVPVVVAVNKIDKPEADPDR-VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             HHHHHHHH----TTCCEEEEEECSSSSTTCCCC-TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHHh----cCceEEEEEEeccccccCHHH-HHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            22222222    246899999999996521111 1100  0001122232  68999999999999999999875

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.43  E-value=4.7e-14  Score=115.46  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC----CCCCeEEEEeeCCCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE----PHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~  106 (193)
                      ....+.||||+|+++|......++..+|++|+|+|+++ .+|+.+..|..+..++..    ...+++++|+||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            44679999999999999888999999999999999998 677754443333322211    2234688999999996521


Q ss_pred             CCC---ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHH
Q psy38           107 VPR---EVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFT  143 (193)
Q Consensus       107 ~~~---~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~  143 (193)
                      ...   ....++..+++...+     ++++++||++|.|+.+++.
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            000   122355667777665     6799999999999987664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.43  E-value=5.4e-13  Score=109.28  Aligned_cols=139  Identities=20%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             eeeeecc------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch------------hhhccCccEEEEEE
Q psy38             3 TLLYLYI------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT------------KSYYRNSVGALLVY   64 (193)
Q Consensus         3 sll~r~~------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~------------~~~~~~~d~~i~v~   64 (193)
                      ||+|++.      ....|++..+.....+.+ +|.  .+.+|||+|..++....            ..+++.+|++++++
T Consensus       195 TLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~  271 (439)
T 1mky_A          195 TLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVL  271 (439)
T ss_dssp             HHHHHHHTSTTEEECCCC------CCEEEEE-TTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEE
Confidence            5667761      122333335666667777 775  57899999985432211            34677899999999


Q ss_pred             eCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH-----HHHHHhCCCcEEEecCCCCcCHH
Q psy38            65 DITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEA-----KAFASQNDILHFETSSRSGFQVE  139 (193)
Q Consensus        65 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~  139 (193)
                      |+++..+.++.  ++......   ...|+++|+||+|+.+.   +....++.     ..++...+++++++||++|.|++
T Consensus       272 d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  343 (439)
T 1mky_A          272 DATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVH---REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID  343 (439)
T ss_dssp             ETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTT---GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHH
T ss_pred             eCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCc---hhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHH
Confidence            99876555542  22222222   25799999999999652   33333332     22333345799999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy38           140 NAFTAVTQEIYNR  152 (193)
Q Consensus       140 e~f~~i~~~i~~~  152 (193)
                      ++|..+.+.+...
T Consensus       344 ~l~~~i~~~~~~~  356 (439)
T 1mky_A          344 RMIDAMNLAYASY  356 (439)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998866543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.42  E-value=9.2e-14  Score=112.72  Aligned_cols=107  Identities=15%  Similarity=0.187  Sum_probs=76.6

Q ss_pred             EEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCC
Q psy38            23 RLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLD  101 (193)
Q Consensus        23 ~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~D  101 (193)
                      ..+.+ +.....+.||||+|+++|......++..+|++|+|+|+++... .....|+..+...    ..| +++|+||+|
T Consensus        66 ~~~~~-~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~D  139 (405)
T 2c78_A           66 AHVEY-ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVD  139 (405)
T ss_dssp             EEEEE-ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGG
T ss_pred             eeeEe-ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECcc
Confidence            33444 4445778999999999998888889999999999999987643 3345566555543    356 889999999


Q ss_pred             CCCCCCCC--ccCHHHHHHHHHhCC-----CcEEEecCCCCcC
Q psy38           102 LLQSGVPR--EVSEAEAKAFASQND-----ILHFETSSRSGFQ  137 (193)
Q Consensus       102 l~~~~~~~--~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  137 (193)
                      +..+  ..  ....++..+++...+     ++++++||++|.|
T Consensus       140 l~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          140 MVDD--PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             GCCC--HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             ccCc--HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            9641  11  111234556666654     6899999999987

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.42  E-value=1.1e-12  Score=104.88  Aligned_cols=128  Identities=15%  Similarity=-0.001  Sum_probs=86.8

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCCChh--HHhhHHHHHHHHHHhcC
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDITSRA--SFEHIPVWMMEAKRHIE   87 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~   87 (193)
                      +.....+.+ +|  ..+.+|||+|...         |.... ..+..+|++++|+|++++.  ....+..|...+... .
T Consensus       215 d~~~~~i~~-~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~  289 (364)
T 2qtf_A          215 SPKRYAIPI-NN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-G  289 (364)
T ss_dssp             CSCEEEEEE-TT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-T
T ss_pred             CCEEEEEEE-CC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-C
Confidence            455667777 77  4678999999622         22222 2478899999999999876  555555565555443 3


Q ss_pred             CCCCeEEEEeeCCCCCCCCCCCcc-CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            88 PHRPVFALVGCKLDLLQSGVPREV-SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        88 ~~~~piilv~nK~Dl~~~~~~~~v-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      ....|+++|+||+|+.+.   ... ..+.+..++...   +.+++.+||+++.|++++|.+|.+.+.....
T Consensus       290 ~~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          290 VSGKPILVTLNKIDKING---DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             CCSCCEEEEEECGGGCCS---CHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCEEEEEECCCCCCc---hHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence            346789999999998652   100 012232333443   3478999999999999999999987766443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.41  E-value=6.9e-14  Score=101.71  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             cEEEEEEeeCCCccccccchhhhccC----ccEEEEEEeCC-ChhHHhhHHHHHHHHHHhcC---CCCCeEEEEeeCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRN----SVGALLVYDIT-SRASFEHIPVWMMEAKRHIE---PHRPVFALVGCKLDL  102 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl  102 (193)
                      ..+.+.+|||+|++.+...+..++.+    +|++|+|||++ +..++..+..|+..+.....   ....|+++|+||+|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            34678899999999998888888876    89999999999 89999999999988876542   346899999999999


Q ss_pred             CC
Q psy38           103 LQ  104 (193)
Q Consensus       103 ~~  104 (193)
                      ..
T Consensus       169 ~~  170 (193)
T 2ged_A          169 FT  170 (193)
T ss_dssp             TT
T ss_pred             cC
Confidence            76

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.41  E-value=5.8e-13  Score=111.20  Aligned_cols=69  Identities=19%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.+.||||+|+.+|......+++.+|++|+|+|+++..+.+....| ..+..    .+.|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCC
T ss_pred             CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcc
Confidence            347899999999999999999999999999999999987666655444 33333    2478999999999965

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.41  E-value=2.4e-13  Score=109.96  Aligned_cols=114  Identities=16%  Similarity=0.102  Sum_probs=80.0

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-EEEEeeCCCCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-FALVGCKLDLLQSGV  107 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~  107 (193)
                      +.....+.||||+|+++|......++..+|++|+|+|+++....+.. .++..+...    ..| +++|+||+|+..+  
T Consensus        62 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~----~vp~iivviNK~Dl~~~--  134 (397)
T 1d2e_A           62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI----GVEHVVVYVNKADAVQD--  134 (397)
T ss_dssp             ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT----TCCCEEEEEECGGGCSC--
T ss_pred             ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc----CCCeEEEEEECcccCCC--
Confidence            33456789999999999988888899999999999999885433333 333333332    356 6799999999641  


Q ss_pred             CC--ccCHHHHHHHHHhCC-----CcEEEecCCCCcC----------HHHHHHHHHHHH
Q psy38           108 PR--EVSEAEAKAFASQND-----ILHFETSSRSGFQ----------VENAFTAVTQEI  149 (193)
Q Consensus       108 ~~--~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~e~f~~i~~~i  149 (193)
                      ..  ....++..+++...+     ++++++||++|.|          +.++|+.+.+.+
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          135 SEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            11  112245566776655     5899999999764          777777776543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.41  E-value=7.6e-14  Score=107.53  Aligned_cols=126  Identities=14%  Similarity=0.190  Sum_probs=71.4

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCccc-------cccch-------hhhccC-------------ccEEEEEEe
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQER-------FRSIT-------KSYYRN-------------SVGALLVYD   65 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~-------~~~~~~-------------~d~~i~v~d   65 (193)
                      .||++.++....+.. +|..+.+.+|||+|...       +..+.       ..|+..             +|+++++++
T Consensus        46 ~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~  124 (274)
T 3t5d_A           46 KKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA  124 (274)
T ss_dssp             ---CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEEC
T ss_pred             CCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEec
Confidence            788888888887777 78888999999999732       22222       333332             778999997


Q ss_pred             CCChhHHhhH-HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC--HHHHHHHHHhCCCcEEEecCCCCcCHHHHH
Q psy38            66 ITSRASFEHI-PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS--EAEAKAFASQNDILHFETSSRSGFQVENAF  142 (193)
Q Consensus        66 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f  142 (193)
                      .+... +... ..++..+..     ..|+++|+||+|+...   ....  .+...+.....+++++.+||.++.|+++++
T Consensus       125 ~~~~~-~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~---~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          125 PSGHG-LKPLDIEFMKRLHE-----KVNIIPLIAKADTLTP---EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             SCCSS-CCHHHHHHHHHHTT-----TSCEEEEESSGGGSCH---HHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred             CCCCC-CCHHHHHHHHHHhc-----cCCEEEEEeccCCCCH---HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence            76522 2222 334444433     5789999999998541   1111  123445555678999999999999999999


Q ss_pred             HHHHHH
Q psy38           143 TAVTQE  148 (193)
Q Consensus       143 ~~i~~~  148 (193)
                      .+|.+.
T Consensus       196 ~~l~~~  201 (274)
T 3t5d_A          196 KKIKDR  201 (274)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            988764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.40  E-value=8.5e-14  Score=114.55  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=82.4

Q ss_pred             eeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCC--------ccccccchhhhccCccEEEEEEeCCChh
Q psy38             3 TLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAG--------QERFRSITKSYYRNSVGALLVYDITSRA   70 (193)
Q Consensus         3 sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~   70 (193)
                      ||+|++    .....++.|.+.......+ ......+.+|||+|        ++.+......+++++|++|+|+|..+. 
T Consensus        38 TL~n~l~~~~~~~v~~~~g~t~~~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~-  115 (456)
T 4dcu_A           38 TIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG-  115 (456)
T ss_dssp             HHHHHHEEEEEC-----------CEEEEC-TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC-
T ss_pred             HHHHHHhCCCCcccCCCCCcceeEEEEEE-EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC-
Confidence            566666    2223344455555455555 44456899999999        677777888999999999999998763 


Q ss_pred             HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38            71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                       +.....|+..+...   ...|+++|+||+|+...   .    ....++. ..++ .++.+||++|.|++++|+++.+.+
T Consensus       116 -~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~---~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          116 -VTAADEEVAKILYR---TKKPVVLAVNKLDNTEM---R----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             -SCHHHHHHHHHHTT---CCSCEEEEEECC----------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             -CChHHHHHHHHHHH---cCCCEEEEEECccchhh---h----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence             33344555555543   45789999999998541   1    1111222 2333 677999999999999999998755

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.40  E-value=2e-12  Score=100.97  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             EEEEEEeeCCCcc---------ccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            32 RIKLQLWDTAGQE---------RFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        32 ~~~l~l~D~~g~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      ...+.+|||+|..         .+......+++.+|++++|+|+++   +.....|+.....   ....|+++|+||.|+
T Consensus        55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~  128 (301)
T 1ega_A           55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDN  128 (301)
T ss_dssp             TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTT
T ss_pred             CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECccc
Confidence            4678999999987         233445677889999999999976   4444445544443   235788899999998


Q ss_pred             CCCCCCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHHHHH
Q psy38           103 LQSGVPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       103 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ..   .+....+...+++...++ .++.+||+++.|++++++.+...+
T Consensus       129 ~~---~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          129 VQ---EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CC---CHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             Cc---cHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            54   122233445566666776 799999999999999999988654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.39  E-value=3.3e-13  Score=119.91  Aligned_cols=128  Identities=15%  Similarity=0.089  Sum_probs=85.0

Q ss_pred             cceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCe-E
Q psy38            15 TVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPV-F   93 (193)
Q Consensus        15 t~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-i   93 (193)
                      +.|+++....+.+ ++....+.||||+|+++|......++..+|++|+|+|+++... .....|+..+...    ..| +
T Consensus       342 erGITIdva~v~f-~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l----gIP~I  415 (1289)
T 3avx_A          342 ARGITINTSHVEY-DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV----GVPYI  415 (1289)
T ss_dssp             ------CCSCEEE-ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH----TCSCE
T ss_pred             cCceeEEEEEEEE-cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc----CCCeE
Confidence            3344333333344 4455788999999999998888889999999999999988543 3344555545443    356 7


Q ss_pred             EEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-----CcEEEecCCCC--------cCHHHHHHHHHHH
Q psy38            94 ALVGCKLDLLQSGVPREVSEAEAKAFASQND-----ILHFETSSRSG--------FQVENAFTAVTQE  148 (193)
Q Consensus        94 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~e~f~~i~~~  148 (193)
                      |+|+||+|+.++........++..+++...+     ++++++||++|        .|+.++|++|...
T Consensus       416 IVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             EEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence            8999999996410000112345666776655     68999999999        4677777777653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.38  E-value=2.8e-13  Score=111.72  Aligned_cols=117  Identities=15%  Similarity=0.078  Sum_probs=69.5

Q ss_pred             EEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCe-EEEEee
Q psy38            23 RLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPV-FALVGC   98 (193)
Q Consensus        23 ~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~n   98 (193)
                      ..+.. ++  ..+.||||+|+++|......++..+|++|+|+|+++.   .+|+....|.+.+...... ..| +++|+|
T Consensus       114 ~~~~~-~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~-~vp~iivviN  189 (467)
T 1r5b_A          114 AYFET-EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-GINHLVVVIN  189 (467)
T ss_dssp             CEEEC-SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-TCSSEEEEEE
T ss_pred             EEEec-CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc-CCCEEEEEEE
Confidence            34555 44  6789999999999998888899999999999999985   3554333333333222212 355 889999


Q ss_pred             CCCCCCCCCCC---ccCHHHHHHHHHhC-------CCcEEEecCCCCcCHHHHHH
Q psy38            99 KLDLLQSGVPR---EVSEAEAKAFASQN-------DILHFETSSRSGFQVENAFT  143 (193)
Q Consensus        99 K~Dl~~~~~~~---~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~e~f~  143 (193)
                      |+|+.......   ....++..+++...       +++++++||++|.|+.++|.
T Consensus       190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence            99995411000   11223455666554       35699999999999998773

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.38  E-value=6.1e-12  Score=106.30  Aligned_cols=110  Identities=18%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             EEEEeeCCCccccccchhhhccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-
Q psy38            34 KLQLWDTAGQERFRSITKSYYRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR-  109 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-  109 (193)
                      .+.||||+|++.|..++..++..+|++|+|+|+++   +.+++.+..    +..    .+.|+++|+||+|+....... 
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~  142 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHE  142 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEeccccccccccccc
Confidence            58999999999999999999999999999999998   666665432    222    247899999999996421110 


Q ss_pred             cc---------CH----------HHHHHHHHhC---------------CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           110 EV---------SE----------AEAKAFASQN---------------DILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       110 ~v---------~~----------~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..         ..          .+..+.....               .++++.+||++|.|++++++++...+-.
T Consensus       143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            00         00          0111111111               2379999999999999999999987643

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.38  E-value=1.5e-12  Score=106.43  Aligned_cols=110  Identities=18%  Similarity=0.071  Sum_probs=78.8

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCC-
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPR-  109 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-  109 (193)
                      ....+.||||+|+++|......++..+|++|+|+|+++... .....|+..+...   ...|+++|+||+|+.+....+ 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence            34679999999999998888889999999999999987542 2234444433332   234788999999996520000 


Q ss_pred             ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHHHHH
Q psy38           110 EVSEAEAKAFASQND-----ILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus       110 ~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~f~~  144 (193)
                      ....++..+++...+     ++++++||++|.|++++|..
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            012345566777777     68999999999999986544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.37  E-value=1.2e-13  Score=105.70  Aligned_cols=109  Identities=7%  Similarity=-0.031  Sum_probs=73.2

Q ss_pred             CCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH---HHHHhc-CCCCCeEEEEeeC-CCCCCCCCCCccCHH
Q psy38            40 TAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM---EAKRHI-EPHRPVFALVGCK-LDLLQSGVPREVSEA  114 (193)
Q Consensus        40 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~piilv~nK-~Dl~~~~~~~~v~~~  114 (193)
                      .+||++.+.+|+.||.++|++|||+|.+|.+.++ ...-+.   .+.... ...+.|++|++|| .|+....+..++...
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4789999999999999999999999999987654 333222   222211 1246899999997 588654222222111


Q ss_pred             HHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           115 EAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       115 ~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ....-. ...+.+..|||.+|+|+.|.++|+++.+.
T Consensus       273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            111111 24567889999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.36  E-value=1.7e-12  Score=97.90  Aligned_cols=141  Identities=9%  Similarity=0.004  Sum_probs=85.4

Q ss_pred             eeeeec-----cCCCCC--cceeeEEEEEEEecCCcEEEEEEeeCCCc-----------cccccchhhhccCccEEEEEE
Q psy38             3 TLLYLY-----IQISDP--TVGVDFFARLVTMRDGARIKLQLWDTAGQ-----------ERFRSITKSYYRNSVGALLVY   64 (193)
Q Consensus         3 sll~r~-----~~~~~p--t~~~~~~~~~~~~~~~~~~~l~l~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~   64 (193)
                      ||+|++     .....|  ++..+.....+.+ ++  ..+.||||+|.           +.+......+++++|++|+|+
T Consensus        44 tlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~  120 (239)
T 3lxx_A           44 ATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KE--TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVV  120 (239)
T ss_dssp             HHHHHHHTSCCSCC-------CCSCEEEEEEE-TT--EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             HHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            566666     222333  3444555666666 65  56889999994           334444556677899999999


Q ss_pred             eCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccC------HHHHHHHHHhCCCcEEEecCCCC--
Q psy38            65 DITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVS------EAEAKAFASQNDILHFETSSRSG--  135 (193)
Q Consensus        65 d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~--  135 (193)
                      |++....  ....|+..+..... ....|+++|+||+|+...   ..+.      .+....++...+..|+.+++..+  
T Consensus       121 d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~---~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~  195 (239)
T 3lxx_A          121 PLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGD---TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGA  195 (239)
T ss_dssp             ETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHHSSSEEECCTTCCHH
T ss_pred             eCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCc---ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCcc
Confidence            9875332  12334444433221 112488899999998652   2222      24567778888887887776643  


Q ss_pred             ---cCHHHHHHHHHHHHHH
Q psy38           136 ---FQVENAFTAVTQEIYN  151 (193)
Q Consensus       136 ---~~i~e~f~~i~~~i~~  151 (193)
                         .++.++|..+...+.+
T Consensus       196 ~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          196 EQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence               6888999888776644

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.30  E-value=8.8e-13  Score=111.91  Aligned_cols=118  Identities=14%  Similarity=0.046  Sum_probs=77.7

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHhhHHHHHHHHHHhcCCCCCeEEE
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFEHIPVWMMEAKRHIEPHRPVFAL   95 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piil   95 (193)
                      +.....+.. .  ...+.||||+|+++|......++..+|++|+|+|+++..   +|.....+...+........+|+++
T Consensus       234 d~~~~~~~~-~--~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV  310 (611)
T 3izq_1          234 SICTSHFST-H--RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII  310 (611)
T ss_dssp             SCSCCEEEC-S--SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred             eeeeEEEec-C--CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence            344444444 3  467899999999999998899999999999999998742   2211112222222222233456889


Q ss_pred             EeeCCCCCCCCCCCccC----HHHHHHHHHhC-----CCcEEEecCCCCcCHHHHH
Q psy38            96 VGCKLDLLQSGVPREVS----EAEAKAFASQN-----DILHFETSSRSGFQVENAF  142 (193)
Q Consensus        96 v~nK~Dl~~~~~~~~v~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~e~f  142 (193)
                      |+||+|+...   ....    .++...+....     +++++++||++|.||.++.
T Consensus       311 VvNKiDl~~~---~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          311 AMNKMDNVDW---SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             EEECTTTTTT---CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             EEecccccch---hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            9999998651   2222    22333444433     3689999999999999773

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.29  E-value=7.8e-13  Score=108.84  Aligned_cols=108  Identities=14%  Similarity=0.087  Sum_probs=74.5

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh---hHHh---hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR---ASFE---HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ....+.||||+|+++|......++..+|++|+|+|+++.   .+|+   ....++..+..   ...+++++|+||+|+.+
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            347899999999999998889999999999999999875   2443   22233322222   22245889999999963


Q ss_pred             CCCCC-ccCHHHHHHHHHhCC-----CcEEEecCCCCcCHHHH
Q psy38           105 SGVPR-EVSEAEAKAFASQND-----ILHFETSSRSGFQVENA  141 (193)
Q Consensus       105 ~~~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e~  141 (193)
                      ....+ ....++..+++...+     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            10000 112234555655554     68999999999999755

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.22  E-value=3.8e-13  Score=113.79  Aligned_cols=122  Identities=17%  Similarity=0.099  Sum_probs=59.3

Q ss_pred             CCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HH---hhHHHHHHHHHHh
Q psy38            12 SDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SF---EHIPVWMMEAKRH   85 (193)
Q Consensus        12 ~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~   85 (193)
                      ..+.+.++.....+.. +  ...+.||||+|+++|......++..+|++|+|+|+++..   .+   ......+..+...
T Consensus       237 ~~~GiTid~~~~~~~~-~--~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l  313 (592)
T 3mca_A          237 RARGVTMDVASTTFES-D--KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL  313 (592)
T ss_dssp             -------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS
T ss_pred             hcCCeeEEeeEEEEEe-C--CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc
Confidence            3455555555555555 3  367899999999999998889999999999999998632   22   1122222222222


Q ss_pred             cCCCCCeEEEEeeCCCCCCCCCCC-ccCHHHHHHHH-HhCCC-----cEEEecCCCCcCHH
Q psy38            86 IEPHRPVFALVGCKLDLLQSGVPR-EVSEAEAKAFA-SQNDI-----LHFETSSRSGFQVE  139 (193)
Q Consensus        86 ~~~~~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  139 (193)
                         ..+++|+|+||+|+......+ .....+...+. ...++     +++.+||++|.||.
T Consensus       314 ---gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          314 ---GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             ---SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ---CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence               223488999999985410000 01123344444 44454     69999999999998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.21  E-value=3.8e-11  Score=102.96  Aligned_cols=69  Identities=17%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ...+.+.+|||+|+.+|......+++.+|++++++|+++..... ...|+..+...    ..|+++|+||.|+.
T Consensus        71 ~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~----~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL----GLPRMVVVTKLDKG  139 (665)
T ss_dssp             ETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred             eCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc----cCCEEEEecCCchh
Confidence            34588999999999999888899999999999999987753332 23444444442    47888999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.18  E-value=7.9e-11  Score=98.39  Aligned_cols=69  Identities=19%  Similarity=0.055  Sum_probs=52.9

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.+.||||+|+.+|......++..+|++|+|+|+++....     |...+.........|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence            447899999999999988888899999999999999875321     222223333334578999999999965

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.18  E-value=6.6e-11  Score=86.98  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             eeeeeccC-----CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccc----------cccchhhhc---cCccEEEEEE
Q psy38             3 TLLYLYIQ-----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQER----------FRSITKSYY---RNSVGALLVY   64 (193)
Q Consensus         3 sll~r~~~-----~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~~---~~~d~~i~v~   64 (193)
                      ||++++..     .+.|+.|..+....+.+ ++   .+.+|||+|...          +......++   ..++++++++
T Consensus        41 TLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (210)
T 1pui_A           41 SALNTLTNQKSLARTSKTPGRTQLINLFEV-AD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLM  116 (210)
T ss_dssp             HHHTTTCCC-------------CCEEEEEE-ET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHhCCCccccccCCCccceeeEEEEe-cC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEE
Confidence            56677632     33677776555445555 33   477999999742          222333444   5789999999


Q ss_pred             eCCChhHHhh--HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCCCcCHHH
Q psy38            65 DITSRASFEH--IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRSGFQVEN  140 (193)
Q Consensus        65 d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~e  140 (193)
                      |++++.++.+  +..|+.   .    ...|+++|+||+|+.+.. .+......+..++...+  +.++++||+++.|+++
T Consensus       117 d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~  188 (210)
T 1pui_A          117 DIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKLASG-ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK  188 (210)
T ss_dssp             ETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSCHH-HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHH
T ss_pred             ECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCCCch-hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHH
Confidence            9988654432  233332   1    247888899999985410 01112345555665544  4788999999999999


Q ss_pred             HHHHHHHHH
Q psy38           141 AFTAVTQEI  149 (193)
Q Consensus       141 ~f~~i~~~i  149 (193)
                      ++.+|.+.+
T Consensus       189 l~~~l~~~~  197 (210)
T 1pui_A          189 LRQKLDTWF  197 (210)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.16  E-value=2.3e-11  Score=94.35  Aligned_cols=111  Identities=16%  Similarity=0.075  Sum_probs=74.6

Q ss_pred             EEEEEeeCCCcc-------------ccccchhhhccCccEEE-EEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            33 IKLQLWDTAGQE-------------RFRSITKSYYRNSVGAL-LVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        33 ~~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      ..+.||||+|..             .+..+...+++.++.+| +|+|+++..+..+...|+..+.    ....|+++|+|
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~N  200 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVIT  200 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEE
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEE
Confidence            578999999964             34456677888888777 6999987655444434544443    34578999999


Q ss_pred             CCCCCCCCCCCccCHHHHHHHHHh--CC-CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            99 KLDLLQSGVPREVSEAEAKAFASQ--ND-ILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        99 K~Dl~~~~~~~~v~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      |+|+...   .....+........  .+ .+++++||++|.|++++|.++.+..-
T Consensus       201 K~Dl~~~---~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          201 KLDLMDE---GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             CGGGSCT---TCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             ccccCCC---CchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            9999652   22122222110011  13 36788999999999999999988443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.14  E-value=1.7e-10  Score=93.61  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=86.6

Q ss_pred             EEEecCCcEEEEEEeeCCCccc----cccchhhh---ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEE
Q psy38            24 LVTMRDGARIKLQLWDTAGQER----FRSITKSY---YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFAL   95 (193)
Q Consensus        24 ~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piil   95 (193)
                      .+.+ ++ ...+.+||++|...    +..+...+   ++.++.+++++|++ ..++.++..|..++..+.. ....|.++
T Consensus       198 ~V~~-~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~IL  274 (416)
T 1udx_A          198 VVEV-SE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLV  274 (416)
T ss_dssp             EEEC-SS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred             EEEe-cC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEE
Confidence            3455 33 25678999999743    22233333   45799999999998 6678888888777766521 12357779


Q ss_pred             EeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            96 VGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        96 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+||.|+..    . ...+...+.+...++.++.+||+++.|++++|.+|.+.+....
T Consensus       275 VlNKlDl~~----~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          275 ALNKVDLLE----E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             EEECCTTSC----H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EEECCChhh----H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence            999999865    2 2234444555566789999999999999999999999887644

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.07  E-value=3.8e-10  Score=90.32  Aligned_cols=96  Identities=21%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             CccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH----
Q psy38            42 GQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK----  117 (193)
Q Consensus        42 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----  117 (193)
                      ..++|.++.+.+++.++++++|+|+++++     ..|...+.+...  +.|+++|+||+||..    .....+...    
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~~p~ilV~NK~DL~~----~~~~~~~~~~~l~  123 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--NNKVLLVGNKADLIP----KSVKHDKVKHWMR  123 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--SSCEEEEEECGGGSC----TTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--CCcEEEEEEChhcCC----cccCHHHHHHHHH
Confidence            45789999999999999999999999853     446666666532  578889999999965    223333333    


Q ss_pred             HHHHhCCC---cEEEecCCCCcCHHHHHHHHHHH
Q psy38           118 AFASQNDI---LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       118 ~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .+++..++   .++.+||++|.|+++++..+.+.
T Consensus       124 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          124 YSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            34666777   79999999999999999998653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.07  E-value=4.3e-10  Score=96.79  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      .+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+++....|.. +...    +.|+++|+||+|+..
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~----~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY----KVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT----TCCEEEEEECTTSTT
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc----CCCEEEEEECCCccc
Confidence            4789999999999998889999999999999999998777776666654 3332    478889999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.07  E-value=5.8e-11  Score=92.60  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             CCcEEEEEEeeCCCc-------cccccchh-------hhccCc-------------cEEEEEEeCCChhHHhhHHHHHHH
Q psy38            29 DGARIKLQLWDTAGQ-------ERFRSITK-------SYYRNS-------------VGALLVYDITSRASFEHIPVWMME   81 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~-------~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~   81 (193)
                      ++....+.+||++|.       +.+..+..       .++.+.             ++++++.+.+. .+++.+..  +.
T Consensus        72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~  148 (301)
T 2qnr_A           72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AF  148 (301)
T ss_dssp             --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HH
T ss_pred             CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HH
Confidence            556688999999998       55555554       455443             33444444322 23444431  22


Q ss_pred             HHHhcCCCCCeEEEEeeCCCCCCCCCCCc--cCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            82 AKRHIEPHRPVFALVGCKLDLLQSGVPRE--VSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        82 i~~~~~~~~~piilv~nK~Dl~~~~~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +... . ...++++|+||+|+..   .+.  ...+++.+++..+++++|++||+++ |++++|.++.+.+....
T Consensus       149 l~~l-~-~~~~iilV~~K~Dl~~---~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          149 MKAI-H-NKVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHH-T-TTSCEEEEECCGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHH-H-hcCCEEEEEEeCCCCC---HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            2222 2 2468889999999865   222  2346778889999999999999999 99999999999887544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.04  E-value=2.3e-09  Score=92.39  Aligned_cols=70  Identities=20%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            30 GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        30 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      +..+.+.||||+|+.+|......+++.+|++|+|+|+++....+....|. .+..    ...|+++|+||+|+..
T Consensus        79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence            34588999999999999888899999999999999999876555444443 2332    2478889999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.03  E-value=7e-10  Score=84.71  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=59.2

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhcc---------CccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCC
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR---------NSVGALLVYDITSRASFEHI-PVWMMEAKRHIEP   88 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~   88 (193)
                      +.....+.. ++  ..+.+|||+|+.++......+++         ++|++++|++++... +... ..|+..+......
T Consensus        73 ~~~~~~~~~-~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~  148 (262)
T 3def_A           73 RPVMVSRTM-GG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK  148 (262)
T ss_dssp             CCEEEEEEE-TT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG
T ss_pred             eeEEEEEEE-CC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch
Confidence            444555555 55  58899999999888766655554         789999999987654 5544 4677777776532


Q ss_pred             C-CCeEEEEeeCCCCCC
Q psy38            89 H-RPVFALVGCKLDLLQ  104 (193)
Q Consensus        89 ~-~~piilv~nK~Dl~~  104 (193)
                      . ..|+++|+||+|+..
T Consensus       149 ~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          149 EIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             GGGGGEEEEEECTTCCC
T ss_pred             hhhcCEEEEEeCcccCC
Confidence            2 248889999999854

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.98  E-value=3.4e-10  Score=90.31  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             EEEEEeeCCCcccc-------------ccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            33 IKLQLWDTAGQERF-------------RSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        33 ~~l~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      ..+.+|||+|..++             ..+...|++++|++|++++.++.+...  ..|+..+.. ......|+++|+||
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~-~~~~~~~~i~V~nK  212 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-VDPSGDRTFGVLTK  212 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH-SCTTCTTEEEEEEC
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH-hcccCCCEEEEEeC
Confidence            46899999998776             456678999999999999876543322  233333333 23445788899999


Q ss_pred             CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +|+...   .....+....++...+.+|+.+++.++.++++.+..+.....
T Consensus       213 ~Dl~~~---~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~  260 (360)
T 3t34_A          213 IDLMDK---GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR  260 (360)
T ss_dssp             GGGCCT---TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred             CccCCC---cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence            998752   334444444455557789999999999999887766554443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.98  E-value=3e-12  Score=95.38  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=45.1

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|.++|+||+|+..   ...+..++..+++...  +++++++||++|.|++++|.++.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLAD---AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHH---HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCc---hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            45679999999854   1234566666666653  5799999999999999999999887653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.97  E-value=8.4e-10  Score=95.07  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             EEEEeeCCCccc---cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38            34 KLQLWDTAGQER---FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE  110 (193)
Q Consensus        34 ~l~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  110 (193)
                      .+.||||||...   .......+++++|++|+|+|++++.+..+...|...+..    ...|+++|+||+|+...   ..
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~---~~  247 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRE---SL  247 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGG---GC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccc---cc
Confidence            589999999755   334556788999999999999988777776656544332    24678899999998542   11


Q ss_pred             cCHH----------HHH-----HHHHh--------CCCcEEEecCC--------------CCcCHHHHHHHHHHHHHH
Q psy38           111 VSEA----------EAK-----AFASQ--------NDILHFETSSR--------------SGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       111 v~~~----------~~~-----~~~~~--------~~~~~~~~Sa~--------------~~~~i~e~f~~i~~~i~~  151 (193)
                      ++.+          ...     .+...        ...+++.|||+              ++.|+++++.++.+.+..
T Consensus       248 ~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          248 IDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence            1110          111     11111        12479999999              999999999999887654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.96  E-value=5.8e-09  Score=89.83  Aligned_cols=68  Identities=24%  Similarity=0.217  Sum_probs=55.9

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ...+.||||+|+.+|......+++.+|++|+|+|+++..+++....|.. +...    ..|+++|+||+|+..
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~----~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY----GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT----TCCEEEEEECTTSTT
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc----CCCEEEEEECCCccc
Confidence            3789999999999998888999999999999999998776666655543 4432    478889999999865

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.93  E-value=1e-09  Score=87.83  Aligned_cols=97  Identities=19%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             CCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH---
Q psy38            41 AGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK---  117 (193)
Q Consensus        41 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~---  117 (193)
                      ..++.|.+..+.+++.++++++|+|++++++     .|...+.....  +.|+++|+||+||..    .....+...   
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~--~~piilV~NK~DLl~----~~~~~~~~~~~l  124 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA--DNPILLVGNKADLLP----RSVKYPKLLRWM  124 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT--TSCEEEEEECGGGSC----TTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC--CCCEEEEEEChhcCC----CccCHHHHHHHH
Confidence            3578899999999999999999999998763     34444444432  578889999999965    223333333   


Q ss_pred             -HHHHhCCC---cEEEecCCCCcCHHHHHHHHHHH
Q psy38           118 -AFASQNDI---LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       118 -~~~~~~~~---~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                       .+++..++   .++.+||++|.|++++++.+.+.
T Consensus       125 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence             33566676   68999999999999999988654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.88  E-value=9.7e-10  Score=89.19  Aligned_cols=126  Identities=15%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             CcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-------c------------------chhhhccCccEEEEEEeCCC
Q psy38            14 PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-------S------------------ITKSYYRNSVGALLVYDITS   68 (193)
Q Consensus        14 pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~------------------~~~~~~~~~d~~i~v~d~~~   68 (193)
                      +|++.+.....+.. ++....+.+||++|...+.       .                  +.+.++.++++.+++|..+.
T Consensus        70 ~t~~~~~i~~v~q~-~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP  148 (418)
T 2qag_C           70 KTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  148 (418)
T ss_dssp             -CCEEEEEECC-------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred             cceeeeeEEEEEec-CCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence            44444433333333 4555689999999976531       1                  12345566666555555543


Q ss_pred             h-hHHhhHH-HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCH--HHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38            69 R-ASFEHIP-VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSE--AEAKAFASQNDILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus        69 ~-~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~  144 (193)
                      . .++..+. .|+..+..     ..|+|+|+||+|+..   .+.+..  ..+.+++...++++|++|+.++.++.++|..
T Consensus       149 t~~~L~~~d~~~lk~L~~-----~v~iIlVinK~Dll~---~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~  220 (418)
T 2qag_C          149 SGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLT---PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKK  220 (418)
T ss_dssp             -CCSCCHHHHHHHHHHTT-----TSEEEEEEESTTSSC---HHHHHHHHHHHHHHHHHHTCCCCCCC-------------
T ss_pred             cccCCCHHHHHHHHHHhc-----cCcEEEEEEcccCcc---HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHH
Confidence            2 3455553 56665542     579999999999865   234443  6677778888999999999999999998877


Q ss_pred             HHHH
Q psy38           145 VTQE  148 (193)
Q Consensus       145 i~~~  148 (193)
                      +...
T Consensus       221 l~~~  224 (418)
T 2qag_C          221 IKDR  224 (418)
T ss_dssp             ----
T ss_pred             HHhh
Confidence            7653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.88  E-value=2.1e-09  Score=82.36  Aligned_cols=73  Identities=11%  Similarity=0.008  Sum_probs=51.3

Q ss_pred             cEEEEEEeeCCCccccccchhh---------hccCccEEEEEEeCCChhHHhhH-HHHHHHHHHhcCCC-CCeEEEEeeC
Q psy38            31 ARIKLQLWDTAGQERFRSITKS---------YYRNSVGALLVYDITSRASFEHI-PVWMMEAKRHIEPH-RPVFALVGCK   99 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~---------~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~-~~piilv~nK   99 (193)
                      ....+.+|||+|..++......         ....+|++++|+|++.. ++... ..|+..+....... ..|+++|+||
T Consensus        85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK  163 (270)
T 1h65_A           85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTH  163 (270)
T ss_dssp             TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence            3477999999999776543321         23479999999998653 45544 46777777654321 2589999999


Q ss_pred             CCCCC
Q psy38           100 LDLLQ  104 (193)
Q Consensus       100 ~Dl~~  104 (193)
                      +|+..
T Consensus       164 ~Dl~~  168 (270)
T 1h65_A          164 AQFSP  168 (270)
T ss_dssp             CSCCC
T ss_pred             cccCC
Confidence            99864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.88  E-value=3.7e-09  Score=80.28  Aligned_cols=109  Identities=13%  Similarity=0.035  Sum_probs=66.8

Q ss_pred             EEEEEeeCCCccccccchh------hhccCccEEEEEEeCCCh---hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITK------SYYRNSVGALLVYDITSR---ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      +.+.||||+|+.+......      ..+.+ +++|++.|....   ..+.....+.......   ...|+++|+||+|+.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence            5789999999876543221      24466 888888887542   2332222222111111   236888999999986


Q ss_pred             CCCCCCccCHHHHHH----------------------------HHHhCC--CcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           104 QSGVPREVSEAEAKA----------------------------FASQND--ILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       104 ~~~~~~~v~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ..   ..+  ++..+                            ++...+  ++++++||+++.|++++|.++.+.+-
T Consensus       185 ~~---~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          185 SE---EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             CH---HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cc---ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            41   111  11111                            123322  48999999999999999999987653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.86  E-value=4.3e-09  Score=82.16  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             EEEEEeeCCCccc-------------cccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            33 IKLQLWDTAGQER-------------FRSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        33 ~~l~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      ..+.||||+|..+             +......+++.+|++|+|+|.++.. .-.+...++..+    .....|+++|+|
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~N  206 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVIT  206 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEc
Confidence            5789999999753             3445677889999999999975432 111212222222    234578999999


Q ss_pred             CCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC------CcCHHHHHHHHHHHHH
Q psy38            99 KLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS------GFQVENAFTAVTQEIY  150 (193)
Q Consensus        99 K~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~e~f~~i~~~i~  150 (193)
                      |+|+...   .....+.........+..++.+|+.+      +.|+.+++..+...+-
T Consensus       207 K~Dl~~~---~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          207 KLDLMDK---GTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             CTTSSCS---SCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             CcccCCc---chHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            9999652   22122222111112235677776554      6788888888766553

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.84  E-value=2.1e-09  Score=85.68  Aligned_cols=104  Identities=13%  Similarity=0.009  Sum_probs=69.5

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.||||+|...   .....+..+|++++|+|.+..+.+..+..+         ....|+++|+||+|+...   ... 
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---------~~~~p~ivVlNK~Dl~~~---~~~-  235 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---------VLELADIVVVNKADGEHH---KEA-  235 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---------SGGGCSEEEEECCCGGGH---HHH-
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---------HhhcCCEEEEECCCCcCh---hHH-
Confidence            6788999999533   233446889999999998765544333211         112477899999998531   111 


Q ss_pred             HHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           113 EAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       113 ~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .....++...          ++.+++.+||++|.|+++++++|.+.+...
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            1111122221          257899999999999999999999887653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.82  E-value=5.9e-09  Score=77.11  Aligned_cols=104  Identities=13%  Similarity=-0.011  Sum_probs=67.6

Q ss_pred             EEEEEeeCCCccccccchhhh-ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            33 IKLQLWDTAGQERFRSITKSY-YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      ..+.+|||+|+-.    .+.+ ....+.+++|+|+++...  ....+.. ..      ..|+++|+||+|+..   ....
T Consensus       109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~~------~~~~iiv~NK~Dl~~---~~~~  172 (221)
T 2wsm_A          109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPE-IF------RVADLIVINKVALAE---AVGA  172 (221)
T ss_dssp             CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHH-HH------HTCSEEEEECGGGHH---HHTC
T ss_pred             CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhh-hh------hcCCEEEEecccCCc---chhh
Confidence            5678999998511    1111 135688999999876431  1111111 11      256779999999854   1223


Q ss_pred             CHHHHHHHHHhC--CCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           112 SEAEAKAFASQN--DILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       112 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      ..++..+++...  +++++++||++|.|++++|.++.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            555565655543  46899999999999999999999877543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.78  E-value=1.3e-08  Score=89.36  Aligned_cols=70  Identities=26%  Similarity=0.254  Sum_probs=59.0

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ++..+.+.||||+|+.+|...+..+++.+|++|+|+|+++..+++....|.... .    ...|+++|+||+|+.
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence            456799999999999999999999999999999999999987787766665433 2    247888999999985

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.73  E-value=3.3e-08  Score=82.92  Aligned_cols=69  Identities=17%  Similarity=0.104  Sum_probs=54.1

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      +...+.|.||||+.+|..-....++=+|++|+|+|+...-.-+....| .....+    +.|++++.||.|...
T Consensus        98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~----~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR----ATPVMTFVNKMDREA  166 (548)
T ss_dssp             TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSCC
T ss_pred             CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh----CCceEEEEecccchh
Confidence            347899999999999998888899999999999999875444444445 334433    378889999999865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.63  E-value=8.8e-08  Score=73.89  Aligned_cols=100  Identities=12%  Similarity=0.012  Sum_probs=69.5

Q ss_pred             eCCCcc-ccccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH
Q psy38            39 DTAGQE-RFRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE  115 (193)
Q Consensus        39 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~  115 (193)
                      ..||+. +........++++|+++.|+|+.++.+...  +..|+         ...|+++|+||+||..    . ...+.
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~----~-~~~~~   70 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKAD----A-AVTQQ   70 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSC----H-HHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCC----H-HHHHH
Confidence            456764 344455677899999999999999876653  33332         3578889999999954    1 11222


Q ss_pred             HHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38           116 AKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       116 ~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      ..++....+++++.+||.++.|+++++..+.+.+...
T Consensus        71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            3445555678999999999999999999888776543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.59  E-value=2.3e-08  Score=80.70  Aligned_cols=48  Identities=10%  Similarity=0.062  Sum_probs=32.5

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFT  143 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~  143 (193)
                      .|+++|+||.|+..   ..  ......+.....+.+++.+||+.+.++.++++
T Consensus       215 kP~i~v~NK~D~~~---~~--~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          215 KPMVIAANKADAAS---DE--QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             SCEEEEEECGGGSC---HH--HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCEEEEEeCccccc---hH--HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            79999999999742   11  11222233333467899999999999887644

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.57  E-value=9e-09  Score=81.89  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             EEEEEeeCCCcc-------------ccccchhhhccCccEEEEE-EeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            33 IKLQLWDTAGQE-------------RFRSITKSYYRNSVGALLV-YDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        33 ~~l~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      ..+.||||+|..             .+..+...|+.+.+.+|++ .+.+....-.+...++..+    .....|+++|+|
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~N  205 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVIT  205 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEE
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEec
Confidence            568999999963             3445666777776665554 4544322211222233322    344678999999


Q ss_pred             CCCCCCCCCCCccCHHHHHH--HHHhCCC-cEEEecCCCCcCHHHHHHHHHHH
Q psy38            99 KLDLLQSGVPREVSEAEAKA--FASQNDI-LHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        99 K~Dl~~~~~~~~v~~~~~~~--~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+|+.+.   .....+....  +....++ +++.+||+++.|++++|+++.+.
T Consensus       206 K~Dl~~~---~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          206 KLDLMDE---GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             CGGGSCT---TCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             cccccCc---chhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            9999652   1111111110  1111232 56789999999999999999874

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.49  E-value=2e-07  Score=73.71  Aligned_cols=103  Identities=10%  Similarity=-0.080  Sum_probs=64.3

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.||||+|.....   ......+|++++|+|.+....+..+..   ...      ..|.++|+||+|+...   ..+.
T Consensus       149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~------~~p~ivv~NK~Dl~~~---~~~~  213 (341)
T 2p67_A          149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLM------EVADLIVINKDDGDNH---TNVA  213 (341)
T ss_dssp             CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHH------HHCSEEEECCCCTTCH---HHHH
T ss_pred             CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hhh------cccCEEEEECCCCCCh---HHHH
Confidence            578999999975433   234689999999999976544332211   111      1466799999998541   1111


Q ss_pred             H--HHHHHHHHhC-------CCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           113 E--AEAKAFASQN-------DILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       113 ~--~~~~~~~~~~-------~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .  ++..+.....       ..+++.+||++|.|+++++++|.+.+.
T Consensus       214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1  1122211111       357899999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.45  E-value=1.4e-06  Score=69.39  Aligned_cols=99  Identities=8%  Similarity=-0.055  Sum_probs=64.9

Q ss_pred             EEEEEeeCCCccccc----cchh---hhccCccEEEEEEeCCCh----------hHHhhHHHHHHHHH------------
Q psy38            33 IKLQLWDTAGQERFR----SITK---SYYRNSVGALLVYDITSR----------ASFEHIPVWMMEAK------------   83 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~------------   83 (193)
                      ..+.+|||+|..++.    .+..   .+++++|++++|+|+++.          +++.++..+..++.            
T Consensus        66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~  145 (363)
T 1jal_A           66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQ  145 (363)
T ss_dssp             CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHH
Confidence            579999999987653    2332   357899999999999862          23444333222221            


Q ss_pred             ---------------------------H--------------------hcCCCCCeEEEEeeCCCCCCCCCCCccCHHHH
Q psy38            84 ---------------------------R--------------------HIEPHRPVFALVGCKLDLLQSGVPREVSEAEA  116 (193)
Q Consensus        84 ---------------------------~--------------------~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~  116 (193)
                                                 .                    +......|+++++|+.|..-   .........
T Consensus       146 ~~~k~~k~g~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~---~~n~~~~~v  222 (363)
T 1jal_A          146 RLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF---ENNPYLDRV  222 (363)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS---SSCHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc---cccHHHHHH
Confidence                                       0                    00122489999999998642   112345667


Q ss_pred             HHHHHhCCCcEEEecCCC
Q psy38           117 KAFASQNDILHFETSSRS  134 (193)
Q Consensus       117 ~~~~~~~~~~~~~~Sa~~  134 (193)
                      .+++...+.+++.+||+.
T Consensus       223 ~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          223 REIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHcCCCEEEechHH
Confidence            788888889999999763

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.42  E-value=9.6e-08  Score=81.57  Aligned_cols=71  Identities=14%  Similarity=0.070  Sum_probs=53.1

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+...+.|.||||+.+|.......++-+|++|+|+|+...-.-+....| ..+..+.    .|.+++.||.|...
T Consensus        63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~~----lp~i~~INKmDr~~  133 (638)
T 3j25_A           63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKMG----IPTIFFINKIDQNG  133 (638)
T ss_dssp             BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHHT----CSCEECCEECCSSS
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHcC----CCeEEEEecccccc
Confidence            33447789999999999998888899999999999999875333333334 3444442    56679999999854

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.42  E-value=1.3e-06  Score=69.24  Aligned_cols=102  Identities=12%  Similarity=-0.041  Sum_probs=61.2

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.|+||+|...   ......+.+|++++|+|++.....+.+..   .+      ...|.++|+||+|+...   ... 
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~---~~~-  230 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLI---VPA-  230 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGH---HHH-
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCc---hhH-
Confidence            4678999999632   12445778999999999986543322211   11      12466799999998431   010 


Q ss_pred             HHHHHHHHH----------hCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           113 EAEAKAFAS----------QNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       113 ~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ......+..          .++.+++.+||++|.|+++++++|.+.+-
T Consensus       231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            011112211          12457899999999999999999988763

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.25  E-value=4.2e-07  Score=76.32  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             EEEEeeCCCccc-----------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCC
Q psy38            34 KLQLWDTAGQER-----------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL  102 (193)
Q Consensus        34 ~l~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  102 (193)
                      .+.||||+|...           +......++..+|++|+|+|+++.........|+..+..    ...|+++|+||+|+
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl  230 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM  230 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence            588999999865           445566788999999999999875445555666665543    24688999999998


Q ss_pred             CC
Q psy38           103 LQ  104 (193)
Q Consensus       103 ~~  104 (193)
                      ..
T Consensus       231 ~~  232 (550)
T 2qpt_A          231 VE  232 (550)
T ss_dssp             SC
T ss_pred             cC
Confidence            64

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.24  E-value=1e-05  Score=69.94  Aligned_cols=69  Identities=22%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.+.|.||||+.+|..-....++=+|++|+|+|+...-.-+...-|.. ...+    +.|.++|.||.|...
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH----TCCEEEEEECSSSTT
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc----CCCeEEEEccccccC
Confidence            36899999999999998888888999999999999987543333333444 3433    267789999999854

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.10  E-value=2.5e-06  Score=65.07  Aligned_cols=90  Identities=11%  Similarity=0.011  Sum_probs=60.7

Q ss_pred             CCccc-cccchhhhccCccEEEEEEeCCChhHHhh--HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHH
Q psy38            41 AGQER-FRSITKSYYRNSVGALLVYDITSRASFEH--IPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAK  117 (193)
Q Consensus        41 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~  117 (193)
                      ||+.. ........++++|++++|+|+.++.+...  +. |+          ..|.++|.||+||...     ...+...
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll----------~k~~iivlNK~DL~~~-----~~~~~~~   68 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS----------RKETIILLNKVDIADE-----KTTKKWV   68 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT----------TSEEEEEEECGGGSCH-----HHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc----------CCCcEEEEECccCCCH-----HHHHHHH
Confidence            45532 22345667889999999999998866543  22 21          4688899999999541     1112334


Q ss_pred             HHHHhCCCcEEEecCCCCcCHHHHHHHHHH
Q psy38           118 AFASQNDILHFETSSRSGFQVENAFTAVTQ  147 (193)
Q Consensus       118 ~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~  147 (193)
                      ++.++.++++ .+||.++.|+++++..+..
T Consensus        69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            4555667888 9999999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.08  E-value=9.8e-06  Score=64.67  Aligned_cols=54  Identities=7%  Similarity=-0.122  Sum_probs=37.9

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~  144 (193)
                      .|+++++||.|..-.............++++..+.+++.+||+...++.+++..
T Consensus       202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            699999999984210000124456677888888899999999987777665544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.06  E-value=2.1e-06  Score=66.83  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=60.2

Q ss_pred             ccchhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHHhC
Q psy38            47 RSITKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFASQN  123 (193)
Q Consensus        47 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~  123 (193)
                      ..+.+..+.++|.+++|+|+.++. +...+.+++.....    .+.|.+||.||+||..+   ...  ..+...++....
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~---~~~~~~~~~~~~~y~~~  149 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIED---QDTEDTIQAYAEDYRNI  149 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCC---HHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCch---hhhHHHHHHHHHHHHhC
Confidence            345566789999999999998764 44444555443332    23566799999999651   110  023333444556


Q ss_pred             CCcEEEecCCCCcCHHHHHHH
Q psy38           124 DILHFETSSRSGFQVENAFTA  144 (193)
Q Consensus       124 ~~~~~~~Sa~~~~~i~e~f~~  144 (193)
                      |.+++.+||.++.|+++++..
T Consensus       150 g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          150 GYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             TCCEEECCHHHHTTCTTTGGG
T ss_pred             CCeEEEEecCCCCCHHHHHhh
Confidence            889999999998888766543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.05  E-value=1.6e-06  Score=75.05  Aligned_cols=108  Identities=18%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             EEEEeeCCCccc-------------cccchhhhc-cCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            34 KLQLWDTAGQER-------------FRSITKSYY-RNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        34 ~l~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      .+.|+||||...             ...+...|+ ..+|++++|.|++....-.+...++..+.    ....|+++|.||
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNK  226 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITK  226 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEEC
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeC
Confidence            578999999543             222334444 57899999999986433333223333333    345789999999


Q ss_pred             CCCCCCCCCCccCHHHHHH-H-HHhCC-CcEEEecCCCCcCHHHHHHHHHHH
Q psy38           100 LDLLQSGVPREVSEAEAKA-F-ASQND-ILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      +|+...   .......... + ....+ .+++.+||++|.|++++++++...
T Consensus       227 iDlv~~---~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          227 LDLMDE---GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             TTSSCT---TCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             cccCCc---chhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            998652   2222111110 0 00123 256779999999999999998874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.03  E-value=1.4e-05  Score=63.01  Aligned_cols=103  Identities=11%  Similarity=-0.026  Sum_probs=61.9

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      ..+.|+||+|...-   .......+|.+++++|.+..+..+.+..+   +..      .+.+++.||+|+..   .....
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~~------~~~ivvlNK~Dl~~---~~~~s  212 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IFE------LADMIAVNKADDGD---GERRA  212 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HHH------HCSEEEEECCSTTC---CHHHH
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hhc------cccEEEEEchhccC---chhHH
Confidence            56889999997532   12345789999999998654322211111   111      23457779999743   11112


Q ss_pred             HHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           113 EAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       113 ~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ......+...          +..+++.+||+++.|++++++.|.+..-
T Consensus       213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2222223221          1357889999999999999999988653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.84  E-value=0.00015  Score=57.51  Aligned_cols=86  Identities=16%  Similarity=0.068  Sum_probs=55.8

Q ss_pred             hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc-CHHHHHHHHHhCCCcEEEec
Q psy38            53 YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV-SEAEAKAFASQNDILHFETS  131 (193)
Q Consensus        53 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v-~~~~~~~~~~~~~~~~~~~S  131 (193)
                      ...++|.+++|.+..-..+...+.+++......    +.|.+||.||+||..+   ... ..+.........|++++.+|
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~----~~~~iivlNK~DL~~~---~~~~~~~~~~~~y~~~G~~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL----QVEPLIVLNKIDLLDD---EGMDFVNEQMDIYRNIGYRVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH----TCEEEEEEECGGGCCH---HHHHHHHHHHHHHHTTTCCEEECB
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc----CCCEEEEEECccCCCc---hhHHHHHHHHHHHHhCCCcEEEEe
Confidence            367899999997764223444455565544433    2456799999999651   110 01122334456788999999


Q ss_pred             CCCCcCHHHHHHHH
Q psy38           132 SRSGFQVENAFTAV  145 (193)
Q Consensus       132 a~~~~~i~e~f~~i  145 (193)
                      |.++.|++++...+
T Consensus       200 a~~~~gl~~L~~~~  213 (358)
T 2rcn_A          200 SHTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTTBTHHHHHHHH
T ss_pred             cCCCcCHHHHHHhc
Confidence            99999999887643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0041  Score=49.64  Aligned_cols=103  Identities=15%  Similarity=0.061  Sum_probs=58.5

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCcccccc----chh---hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRS----ITK---SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PH   89 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~   89 (193)
                      .+...-.+.+ ++  ..++|.||+|..+-..    +..   ..++.+|++++|.|++++..  +......++..... ..
T Consensus       107 ~~~~~g~~~~-~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~  181 (376)
T 4a9a_A          107 LVTVPGVIRY-KG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLN  181 (376)
T ss_dssp             CCEEEEEEEE-TT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEET
T ss_pred             eeeeeEEEEe-CC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhc
Confidence            3455556677 66  6688999999643221    112   34568999999999998632  22222223332211 12


Q ss_pred             CCeEEEEeeCCCCCCC-----CCCCccCHHHHHHHHHhCCC
Q psy38            90 RPVFALVGCKLDLLQS-----GVPREVSEAEAKAFASQNDI  125 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~-----~~~~~v~~~~~~~~~~~~~~  125 (193)
                      ..|.+++.||.|....     ........++...+...+.+
T Consensus       182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            3455589999997431     11233455666666555443

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.89  E-value=0.00032  Score=56.35  Aligned_cols=39  Identities=15%  Similarity=-0.001  Sum_probs=24.0

Q ss_pred             EEEEEeeCCCcccccc-------chhhhccCccEEEEEEeCCChhH
Q psy38            33 IKLQLWDTAGQERFRS-------ITKSYYRNSVGALLVYDITSRAS   71 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~s   71 (193)
                      ..+.+|||+|...+..       ....+++++|++++|+|+++.++
T Consensus        86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3599999999876543       34567889999999999986544

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.02  E-value=0.006  Score=50.59  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=59.7

Q ss_pred             EEEEEEeeCCCcccccc-chhh---h--ccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeE-EEEeeCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRS-ITKS---Y--YRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVF-ALVGCKLDLLQ  104 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~  104 (193)
                      .+.+.|+||+|...... +...   .  +-.+|.+++|+|++....   .......+...     .|+ .+|.||.|...
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~~-----~~i~gvVlNK~D~~~  254 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKDK-----VDVASVIVTKLDGHA  254 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHHH-----HCCCCEEEECTTSCC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHhh-----cCceEEEEeCCcccc
Confidence            35688999999764221 1111   1  227899999999976432   22222233322     343 68999999854


Q ss_pred             CCCCCccCHHHHHHHHHhCCCcE------------------EEecCCCCcC-HHHHHHHHHHH
Q psy38           105 SGVPREVSEAEAKAFASQNDILH------------------FETSSRSGFQ-VENAFTAVTQE  148 (193)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~e~f~~i~~~  148 (193)
                      .   ...    +.......+.++                  +.+|+..|.| +.++++++.+.
T Consensus       255 ~---~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          255 K---GGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             C---CTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             c---hHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            1   111    222222333332                  3468899998 99999888765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.02  E-value=0.2  Score=40.14  Aligned_cols=43  Identities=7%  Similarity=-0.141  Sum_probs=28.4

Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC--CcEEEecCCC
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQND--ILHFETSSRS  134 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~  134 (193)
                      .|++.+.|+.|..-.. ...-..+...+++...+  ..++.+||..
T Consensus       225 kp~~y~~Nv~e~~~~~-~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          225 KPVIYLVNMSERDFLR-QKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             SCEEEEEECCHHHHTT-TCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             CceEEEEEecchhhcc-cchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            7888999998832100 01123556677877766  7899999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.82  E-value=0.23  Score=40.38  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             EEEEEeeCCCcccccc-----chh-hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRS-----ITK-SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG  106 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  106 (193)
                      +.+.|+||+|......     +.. .....+|.+++|.|++...   +.......+....    .+..+|.||.|...  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~~----~i~gVIlTKlD~~~--  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEAT----PIGSIIVTKLDGSA--  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHSC----TTEEEEEECCSSCS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhhC----CCeEEEEECCCCcc--
Confidence            5678999999643221     110 1223578999999987542   2222333343322    23448999999743  


Q ss_pred             CCCccCHHHHHHHHHhCCCcEEEecCCCCcCHH
Q psy38           107 VPREVSEAEAKAFASQNDILHFETSSRSGFQVE  139 (193)
Q Consensus       107 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  139 (193)
                           ....+.......+.|+..++.  |++++
T Consensus       254 -----~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 -----KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             -----SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             -----cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence                 333455666678888887776  44443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.13  E-value=0.37  Score=36.94  Aligned_cols=92  Identities=12%  Similarity=0.059  Sum_probs=55.4

Q ss_pred             EEEEEeeCCCccc--ccc-chh-----hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            33 IKLQLWDTAGQER--FRS-ITK-----SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        33 ~~l~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      +.+.++||+|...  ... +..     .....+|.+++|.|.+..   .+.......+...    .....+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~----~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQA----SKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHHT----CTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHhh----CCCCEEEEeCCCCCc
Confidence            5688999999766  321 111     124468999999998642   2332223333321    122558999999643


Q ss_pred             CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38           105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN  140 (193)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e  140 (193)
                             ....+..++...+.++..++  .|+++++
T Consensus       254 -------~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 -------KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             -------THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             -------chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                   23345567777888888776  4555554

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=93.07  E-value=0.23  Score=35.22  Aligned_cols=66  Identities=9%  Similarity=-0.079  Sum_probs=45.6

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcC-CCCCeEEEEeeCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIE-PHRPVFALVGCKLDL  102 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl  102 (193)
                      +.+.++|+++...  ......+..+|.+|++...+.. + ..+..+++.+..... ....++.+|.|+.|-
T Consensus        76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~  142 (206)
T 4dzz_A           76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE  142 (206)
T ss_dssp             SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred             CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            5678999997652  3445566779999999987643 4 666666666665432 224566899999985

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=91.29  E-value=1.5  Score=31.49  Aligned_cols=65  Identities=6%  Similarity=-0.031  Sum_probs=45.4

Q ss_pred             EEEEEeeCCCc-cccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            33 IKLQLWDTAGQ-ERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        33 ~~l~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      +.+.+.|+++. ..  ......+..+|.+|++...+ ..++..+...++.+....   ..++.+|.|+.|-.
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPY  133 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCT
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCc
Confidence            55789999876 43  23455677899999998764 566777777777666532   34577999999853

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=88.66  E-value=1.2  Score=36.19  Aligned_cols=90  Identities=14%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             EEEEEeeCCCccc--ccc-ch---hh--hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            33 IKLQLWDTAGQER--FRS-IT---KS--YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        33 ~~l~l~D~~g~~~--~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      +.+.+.||+|...  ... +.   ..  ..-..+.+++|.|+....   ++......+....    .+..+|.||.|...
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---~a~~~a~~f~~~~----~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---KAYDLASRFHQAS----PIGSVIITKMDGTA  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GGHHHHHHHHHHC----SSEEEEEECGGGCS
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---HHHHHHHHHhccc----CCcEEEEecccccc
Confidence            5577999999643  111 11   11  112468999999987643   2223334444332    34558999999643


Q ss_pred             CCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCH
Q psy38           105 SGVPREVSEAEAKAFASQNDILHFETSSRSGFQV  138 (193)
Q Consensus       105 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i  138 (193)
                             ....+.......+.|+..++.  |+++
T Consensus       253 -------~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 -------KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             -------CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             -------cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                   334456666677898887776  5444

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=85.19  E-value=5.6  Score=31.10  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             HHhCCCcEEEecCCC---------CcCHHHHHHHHHHHHHHHhcCCCcccc
Q psy38           120 ASQNDILHFETSSRS---------GFQVENAFTAVTQEIYNRVQSGDYKVE  161 (193)
Q Consensus       120 ~~~~~~~~~~~Sa~~---------~~~i~e~f~~i~~~i~~~~~~~~~~~~  161 (193)
                      ++..+.|+|+.++.+         ..+..+.|..++..++++...++...-
T Consensus       307 aq~~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~  357 (361)
T 3pg5_A          307 AQDVHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHH  357 (361)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHHHCCCC----
T ss_pred             HHHHCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhc
Confidence            344566788887755         458889999999999999988876543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=84.95  E-value=8.5  Score=31.06  Aligned_cols=84  Identities=17%  Similarity=0.065  Sum_probs=47.0

Q ss_pred             EEEEEeeCCCcccccc-chh-----hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC-CeEEEEeeCCCCCCC
Q psy38            33 IKLQLWDTAGQERFRS-ITK-----SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR-PVFALVGCKLDLLQS  105 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~~~  105 (193)
                      +.+.|+||+|...... +..     ..+..+|.+++|.|++...   +.......+.    ... ....+|.||.|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence            5678999999754211 111     1123689999999986543   2222222222    112 23668999999743 


Q ss_pred             CCCCccCHHHHHHHHHhCCCcEEEe
Q psy38           106 GVPREVSEAEAKAFASQNDILHFET  130 (193)
Q Consensus       106 ~~~~~v~~~~~~~~~~~~~~~~~~~  130 (193)
                            ....+..+....+.++..+
T Consensus       253 ------~~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 ------KGGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ------TTHHHHHHHHHSSCCEEEE
T ss_pred             ------chHHHHHHHHHHCCCEEEe
Confidence                  1122344566667665554

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=82.97  E-value=11  Score=27.10  Aligned_cols=87  Identities=6%  Similarity=-0.090  Sum_probs=56.6

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      .+.+.++|+++...  ......+..+|.+|++...+ ..++..+..+++.+.... .....+-+|.|+.+-..     ..
T Consensus       118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~-----~~  188 (245)
T 3ea0_A          118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNS-----RI  188 (245)
T ss_dssp             HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCT-----TS
T ss_pred             hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCC-----CC
Confidence            35678999987542  24455677899999998764 667888878777776543 22345668999998643     13


Q ss_pred             CHHHHHHHHHhCCCcEEEe
Q psy38           112 SEAEAKAFASQNDILHFET  130 (193)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~  130 (193)
                      ..+   .+.+..+.+++.+
T Consensus       189 ~~~---~~~~~~~~~v~~~  204 (245)
T 3ea0_A          189 TSD---EIEKVIGRPISKR  204 (245)
T ss_dssp             CHH---HHHHHHTSCEEEE
T ss_pred             CHH---HHHHHhCCCeEEE
Confidence            333   3344456666644

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=80.02  E-value=13  Score=27.17  Aligned_cols=83  Identities=13%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..+...+..++..+....   ...+-+|.|+.+-..    . . 
T Consensus       111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~----~-~-  178 (263)
T 1hyq_A          111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG---TKVLGVVVNRITTLG----I-E-  178 (263)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CEEEEEEEEEECTTT----H-H-
T ss_pred             CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC---CCeeEEEEccCCccc----c-c-
Confidence            5678999987543  23345567789999998754 556777777776666541   245558999988533    1 1 


Q ss_pred             HHHHHHHHHhCCCcEE
Q psy38           113 EAEAKAFASQNDILHF  128 (193)
Q Consensus       113 ~~~~~~~~~~~~~~~~  128 (193)
                       ....++.+..+.+++
T Consensus       179 -~~~~~~~~~~~~~~~  193 (263)
T 1hyq_A          179 -MAKNEIEAILEAKVI  193 (263)
T ss_dssp             -HHHHHHHHHTTSCEE
T ss_pred             -chHHHHHHHhCCCeE
Confidence             334445555665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-31
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-30
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-27
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-27
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-26
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-26
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-24
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-24
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-23
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-23
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-22
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-20
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-19
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-19
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-18
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-18
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	6e-18
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-17
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-17
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-16
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-16
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-16
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-15
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-15
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-15
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-15
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-14
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-14
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-14
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-14
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-13
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-13
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-12
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-12
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-12
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-11
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-11
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-10
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-10
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-10
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-09
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-08
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	5e-07
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-07
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	8e-06
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-05
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-05
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-05

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (275), Expect = 1e-31
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G+DF  + V +    ++KLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 27  FNPSFITTIGIDFKIKTVDINGK-KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 85

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              +F +I  W      H      +   VG K D+      R V+  + +A A +  I  
Sbjct: 86  DERTFTNIKQWFKTVNEHANDEAQLLL-VGNKSDM----ETRVVTADQGEALAKELGIPF 140

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRV 153
            E+S+++   V   F  + + I  ++
Sbjct: 141 IESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G+DF  R + + DG RIKLQ+WDTAGQERFR+IT +YYR ++G +LVYDIT
Sbjct: 31  FNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT 89

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF++I  W+   + H         L             R+VS+   +  A    I  
Sbjct: 90  NEKSFDNIRNWIRNIEEHASADVEKMILGNKC----DVNDKRQVSKERGEKLALDYGIKF 145

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRV 153
            ETS+++   VENAF  + ++I  ++
Sbjct: 146 METSAKANINVENAFFTLARDIKAKM 171

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (246), Expect = 6e-27
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 12/156 (7%)

Query: 8   YIQISDPTVGVDFFARLVTMR---------DGARIKLQLWDTAGQERFRSITKSYYRNSV 58
           +      TVG+DF  + V               ++ LQLWDTAGQERFRS+T +++R+++
Sbjct: 30  FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM 89

Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           G LL++D+TS+ SF ++  WM + + +     P   L+G K DL      REV+E +A+ 
Sbjct: 90  GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARE 146

Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            A +  I +FETS+ +G  VE A   +   I  R++
Sbjct: 147 LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 7e-27
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 5/145 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+GVDF  + +++ DG + KL +WDTAGQERFR++T SYYR + G +LVYD+T
Sbjct: 32  FDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 90

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R +F  +  W+ E + +   +  V  LVG K         REV   E   FA ++ +L 
Sbjct: 91  RRDTFVKLDNWLNELETYCTRNDIVNMLVGNK----IDKENREVDRNEGLKFARKHSMLF 146

Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
            E S+++   V+ AF  + ++I   
Sbjct: 147 IEASAKTCDGVQCAFEELVEKIIQT 171

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (243), Expect = 1e-26
 Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 4/131 (3%)

Query: 20  FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWM 79
            F   V   DG ++KLQ+WDTAGQERFRS+T +YYR++   LL+YD+T++ASF++I  W+
Sbjct: 43  DFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWL 102

Query: 80  MEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVE 139
            E   + +    +  L        +  V RE    + +  A +  +   ETS+++G  V+
Sbjct: 103 TEIHEYAQHDVALMLLGNKVDSAHERVVKRE----DGEKLAKEYGLPFMETSAKTGLNVD 158

Query: 140 NAFTAVTQEIY 150
            AFTA+ +E+ 
Sbjct: 159 LAFTAIAKELK 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.4 bits (244), Expect = 1e-26
 Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 5/148 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y      T+GVDF  + V +     +KLQ+WDTAGQERFR+IT SYYR S G ++VYD+T
Sbjct: 31  YTNDYISTIGVDFKIKTVELDGK-TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT 89

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            + SF  + +W+ E  R+         LVG K DL      R V    AK FA  N +  
Sbjct: 90  DQESFNGVKMWLQEIDRYATSTVLKL-LVGNKCDLKD---KRVVEYDVAKEFADANKMPF 145

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQS 155
            ETS+     VE+AF  + ++I   +  
Sbjct: 146 LETSALDSTNVEDAFLTMARQIKESMSQ 173

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 3e-24
 Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+GVDF  + V + +G ++KLQ+WDTAGQERFRSIT+SYYR++   +L YDIT
Sbjct: 30  FPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT 88

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              SF  +P   +        ++ +  LVG K+DL +    REVS+  A+ F+   D+ +
Sbjct: 89  CEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAE---RREVSQQRAEEFSEAQDMYY 144

Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS++    VE  F  +   +
Sbjct: 145 LETSAKESDNVEKLFLDLACRL 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (226), Expect = 3e-24
 Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 8/159 (5%)

Query: 3   TLLYLYIQ----ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSV 58
            LL+ +I+              F   +    G  +KLQ+WDTAGQERFRS+T+SYYR + 
Sbjct: 20  CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 79

Query: 59  GALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKA 118
           GALLVYDITSR ++  +  W+ +A+     +  +  L G K         REV+  EA  
Sbjct: 80  GALLVYDITSRETYNALTNWLTDARMLASQNIVII-LCGNK---KDLDADREVTFLEASR 135

Query: 119 FASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSGD 157
           FA +N+++  ETS+ +G  VE AF    ++I N+++SG+
Sbjct: 136 FAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 2e-23
 Identities = 63/149 (42%), Positives = 87/149 (58%), Gaps = 5/149 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +   S  T+GV+F  R + + DG  IK Q+WDTAGQER+R IT +YYR +VGALLVYDI 
Sbjct: 29  FNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA 87

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
              ++E++  W+ E + H + +  +  LVG K DL      R V   EA+AFA +N++  
Sbjct: 88  KHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRH---LRAVPTDEARAFAEKNNLSF 143

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSG 156
            ETS+     VE AF  +  EIY  V   
Sbjct: 144 IETSALDSTNVEEAFKNILTEIYRIVSQK 172

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 3e-23
 Identities = 56/122 (45%), Positives = 83/122 (68%), Gaps = 4/122 (3%)

Query: 29  DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEP 88
            G +IKLQ+WDTAGQERFR++T+SYYR + GAL+VYDIT R+++ H+  W+ +A+    P
Sbjct: 49  SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP 108

Query: 89  HRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE 148
           +  +  L+G K DL      R+V+  EAK FA +N +L  E S+++G  VE+AF    ++
Sbjct: 109 NTVII-LIGNKADLEA---QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 164

Query: 149 IY 150
           IY
Sbjct: 165 IY 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.2 bits (215), Expect = 1e-22
 Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      TVG+DF  + +   D  RIKLQ+WDTAGQER+R+IT +YYR ++G +L+YDIT
Sbjct: 30  FTPAFVSTVGIDFKVKTIYRNDK-RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 88

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF  +  W  + K +   +  V  LVG K D+    V       +    A       
Sbjct: 89  NEESFNAVQDWSTQIKTYSWDNAQVL-LVGNKCDMEDERVVSSERGRQ---LADHLGFEF 144

Query: 128 FETSSRSGFQVENAFTAVTQEIYNR 152
           FE S++    V+  F  +   I  +
Sbjct: 145 FEASAKDNINVKQTFERLVDVICEK 169

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 1e-20
 Identities = 65/151 (43%), Positives = 97/151 (64%), Gaps = 5/151 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +  + D T+GV+F AR+V +    +IKLQ+WDTAGQE FRSIT+SYYR + GALLVYDIT
Sbjct: 28  FQPVHDLTIGVEFGARMVNIDGK-QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 86

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R +F H+  W+ +A++H   +  +  L+G K D       R+V   E +AFA ++ ++ 
Sbjct: 87  RRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSD---LESRRDVKREEGEAFAREHGLIF 142

Query: 128 FETSSRSGFQVENAFTAVTQEIYNRVQSGDY 158
            ETS+++   VE AF    +EIY ++Q G +
Sbjct: 143 METSAKTACNVEEAFINTAKEIYRKIQQGLF 173

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 78.2 bits (191), Expect = 3e-19
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           T+LY        T        + T+     I   +WD  GQ++ R + + Y++N+ G + 
Sbjct: 15  TILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           V D   R         +M      E    V  +   K DL  +    E+++         
Sbjct: 74  VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 133

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
            +     T + SG  +      ++ ++
Sbjct: 134 RNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 5e-19
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           T+LY        T        + T+     +K  +WD  GQ++ R + + YY  + G + 
Sbjct: 27  TILYKLKLGQSVTTIPTVGFNVETVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 85

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           V D   R   +     +       E    +  +   K DL  +  P E+ E         
Sbjct: 86  VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 145

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
            +     + + SG  +    T +T   
Sbjct: 146 RNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 3e-18
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 1/150 (0%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           T+LY        T        + T+     +KL +WD  GQ   R   + YY ++   + 
Sbjct: 32  TILYRLQIGEVVTTKPTIGFNVETLSYK-NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 90

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           V D T +         +    +  E       +   K D   +    EVS+         
Sbjct: 91  VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD 150

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
                  +S+  G  +      +   I   
Sbjct: 151 RSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 4e-18
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 1/147 (0%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           T+LY +             + +  +      +  +WD  GQE  RS   +YY N+   ++
Sbjct: 30  TILYQFSMNEVVHTSPTIGSNVEEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 88

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           V D T R         + +   H +  +    +   K D+ +     E+S+         
Sbjct: 89  VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 148

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
           +        + +G  +      +   +
Sbjct: 149 HQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 6e-18
 Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G+DF ++     +   I+LQLWDTAGQERFRS+  SY R+S  A++VYDIT
Sbjct: 25  FDNTYQATIGIDFLSK-TMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIT 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SF+    W+ + +        +  LVG K DL      R+VS  E +  A + +++ 
Sbjct: 84  NVNSFQQTTKWIDDVRTERGSDVIIM-LVGNKTDLAD---KRQVSIEEGERKAKELNVMF 139

Query: 128 FETSSRSGFQVENAFTAVTQEI 149
            ETS+++G+ V+  F  V   +
Sbjct: 140 IETSAKAGYNVKQLFRRVAAAL 161

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.3 bits (181), Expect = 1e-17
 Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 38  WDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97
           WDTAGQERF S+   YYRN+  AL+VYD+T   SF     W+ E          + ALVG
Sbjct: 57  WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVG 115

Query: 98  CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
            K+D+LQ G  R+V+  E +  A +  +L FETS+++G  V + F  + ++I
Sbjct: 116 NKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 4e-17
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            L   ++    I      ++ F R     D +   L++ DTAG E+F S+   Y +N  G
Sbjct: 18  ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 77

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            +LVY + ++ SF+ I     +  R     +    LVG K+DL      REVS +E +A 
Sbjct: 78  FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES---EREVSSSEGRAL 134

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
           A +      ETS++S   V+  F  + +++ 
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 2e-16
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 27  MRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHI 86
              G R+ L +WDTAGQERF ++   YYR+S GA+LVYDIT   SF+ +  W+ E ++ +
Sbjct: 46  NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML 105

Query: 87  EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT 146
                +  +             R VS  EA+++A      H+ TS++    +E  F  + 
Sbjct: 106 GNEICLCIVGNKIDL----EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 161

Query: 147 QEIY 150
           + + 
Sbjct: 162 KRMI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 2e-16
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 32  RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRP 91
            +K ++WDTAGQER+ S+   YYR +  A++VYDIT+  SF     W+ E +R   P+  
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113

Query: 92  VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
           +  L G K DL      R V   EA+++A  N +L  ETS+++   V   F A+ +++ 
Sbjct: 114 IA-LSGNKADLAN---KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 4e-16
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 20  FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWM 79
            F       DG  + +Q+WDTAGQERFRS+   +YR S   LL + +    SF+++  W 
Sbjct: 42  EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 101

Query: 80  MEAKRHI---EPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-DILHFETSSRSG 135
            E   +    EP    F ++G K+D+ +    R+VS  EA+A+   N D  +FETS++  
Sbjct: 102 KEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFETSAKDA 157

Query: 136 FQVENAFTAVTQEI 149
             V  AF    + +
Sbjct: 158 TNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 68.8 bits (167), Expect = 1e-15
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            L   ++    + D         R   + DG  +++ + DTAGQE + +I  +Y+R+  G
Sbjct: 19  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            L V+ IT   SF     +  +  R  E     F LVG K DL      R+VS  EAK  
Sbjct: 79  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNR 135

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIYNR 152
           A Q ++ + ETS+++   V+  F  + +EI  R
Sbjct: 136 ADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 2e-15
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            L   +IQ   +SD    ++     +   DG   +L + DTAGQE F ++ + Y R   G
Sbjct: 21  ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 80

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            LLV+ I  R SF  +     +  R  +       LVG K DL      R+V  +EA AF
Sbjct: 81  FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES---QRQVPRSEASAF 137

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
            + + + +FE S++    V+ AF  + + +    +
Sbjct: 138 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 2e-15
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           ++   DPT+   +  ++V   +     L + DTAGQE + ++   Y R   G L V+ I 
Sbjct: 28  FVDEYDPTIEDSYRKQVVIDGE--TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
           +  SFE I  +  + KR  +       LVG K DL    V    ++  A+       I +
Sbjct: 86  NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR----SYGIPY 141

Query: 128 FETSSRSGFQVENAFTAVTQEIY 150
            ETS+++   VE+AF  + +EI 
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIR 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 67.7 bits (164), Expect = 5e-15
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           TLL          +       + +++     KL +WD  GQ + R   +SY+ N+   + 
Sbjct: 31  TLLKQLASEDISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           V D   R  FE     + E     +       +   K DLL +    E++E         
Sbjct: 90  VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 149

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEI 149
                   S+ +G  V++    V + +
Sbjct: 150 RVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (161), Expect = 1e-14
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           Y Q    T+G DF  + VT+       +Q+WDTAGQERF+S+  ++YR +   +LVYD+T
Sbjct: 27  YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 86

Query: 68  SRASFEHIPVWMMEAKRHIEPH---RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
           + +SFE+I  W  E   H   +      F ++G K+D  +S        A+  A  S  D
Sbjct: 87  NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA-KSLGD 145

Query: 125 ILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
           I  F TS+++   V+ AF  + +    + Q
Sbjct: 146 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 2e-14
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            L   +IQ   ++D    ++       + D    +L + DTAGQE F ++ + Y R   G
Sbjct: 20  ALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEG 79

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            LLV+ +T R SFE I  +  +  R  +       L+G K DL      R+V++ E +  
Sbjct: 80  FLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH---QRQVTQEEGQQL 136

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIY 150
           A Q  + + E S++    V+ AF  + + I 
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-14
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 13/158 (8%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +     PTV  ++   +  M  G    L L+DTAGQE +  +    Y  +   L+ + + 
Sbjct: 28  FPSEYVPTVFDNYAVTV--MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 85

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS---------EAEAKA 118
           S +SFE++    +    H  P  P   LVG ++DL       E              A+ 
Sbjct: 86  SPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144

Query: 119 FASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
            A     + + E S+ +   ++N F           + 
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 3e-14
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +++  DPT+   +  ++       +  L++ DTAG E+F ++   Y +N  G  LVY IT
Sbjct: 28  FVEKYDPTIEDSYRKQVEVDCQ--QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT 85

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDIL 126
           ++++F  +     +  R  +       LVG K DL      R V + + +  A Q  +  
Sbjct: 86  AQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWCNCA 142

Query: 127 HFETSSRSGFQVENAFTAVTQEIY 150
             E+S++S   V   F  + ++I 
Sbjct: 143 FLESSAKSKINVNEIFYDLVRQIN 166

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 3e-14
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 1/150 (0%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           T+L  +      T+       + T+      KL +WD  GQ+  RS  ++Y+ ++ G + 
Sbjct: 17  TILKKFNGEDVDTISPTLGFNIKTLEHR-GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 75

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ 122
           V D   R   +     +               +   K DL  +     + EA        
Sbjct: 76  VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS 135

Query: 123 NDILHFETSSRSGFQVENAFTAVTQEIYNR 152
           +       S+ +G  +      +  +I +R
Sbjct: 136 HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 5e-13
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            LL  Y       +    V     +     G +  L L+DTAGQE +  +    Y  +  
Sbjct: 24  CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDL---------LQSGVPRE 110
            L+ + + + ASF+++    +   +   P+ P    +G ++DL         L     + 
Sbjct: 84  FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL-IGTQIDLRDDPKTLARLNDMKEKP 142

Query: 111 VSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYN 151
           +   + +  A +     + E S+ +   ++  F      I  
Sbjct: 143 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 8e-13
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 4/116 (3%)

Query: 36  QLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFAL 95
            +WDTAG ERFR++   YYR S  A++VYDIT   +F  +  W+ E ++H  P   V  +
Sbjct: 56  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA-I 114

Query: 96  VGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
            G K DL      REV E +AK +A     +  ETS+++   +   F  +++ I +
Sbjct: 115 AGNKCDLTD---VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 2e-12
 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF-RSITKSYYRNSVGALLVYDI 66
           +   ++ T+GVDF  R V +    RIK+QLWDTAGQERF +S+ + YYRN    + VYD+
Sbjct: 27  FPDRTEATIGVDFRERAVDIDGE-RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM 85

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T+ ASF  +P W+ E K+H+  +     LVG K DL       +V    A+ FA  + + 
Sbjct: 86  TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS---AIQVPTDLAQKFADTHSMP 142

Query: 127 HFETSSRS---GFQVENAFTAV 145
            FETS+++      VE  F  +
Sbjct: 143 LFETSAKNPNDNDHVEAIFMTL 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 2e-12
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            L   + Q   + D    ++      T  D     L + DTAGQE F ++ + Y R   G
Sbjct: 19  ALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 78

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            L+VY +T +ASFEH+  +     R  +       LV  K+DL+     R+V+  + K  
Sbjct: 79  FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL---RKVTRDQGKEM 135

Query: 120 ASQNDILHFETSSRSG-FQVENAFTAVTQEIYNR 152
           A++ +I + ETS++     V+  F  + + I  +
Sbjct: 136 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 2e-12
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            LL  Y       +    V        M DG  + L LWDTAGQE +  +    Y  +  
Sbjct: 20  CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE--------- 110
           +L+ + + S ASFE++        RH  P+ P+   VG KLDL       E         
Sbjct: 80  SLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL-VGTKLDLRDDKDTIEKLKEKKLTP 138

Query: 111 VSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYN 151
           ++  +  A A +   + + E S+ +   ++  F    + +  
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (135), Expect = 6e-11
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +      T+G DF  + V + D   + +Q+WDTAGQERF+S+  ++YR +   +LV+D+T
Sbjct: 27  FSNQYKATIGADFLTKEVMVDDR-LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT 85

Query: 68  SRASFEHIPVWMMEAKRHIEPHRP---VFALVGCKLDLLQSGVPREVSEAEAKAFASQND 124
           +  +F+ +  W  E      P  P    F ++G K+DL      +  ++       S+N+
Sbjct: 86  APNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNN 142

Query: 125 ILHFETSSRSGFQVENAFTAVTQEIYNRVQSGDYKVEDG 163
           I +FETS++    VE AF  + +    +    +   E  
Sbjct: 143 IPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 181

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 6e-11
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 14/156 (8%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +   PTV  ++ A      D  RI+L LWDT+G   + ++    Y +S   L+ +DI+
Sbjct: 27  FPENYVPTVFENYTAS--FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 84

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP---------REVSEAEAKA 118
              + + +        +   P+  +  LVGCK DL                 VS  +   
Sbjct: 85  RPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 143

Query: 119 FASQNDILHF-ETSSRSGF-QVENAFTAVTQEIYNR 152
            A Q     + E S+      V + F   T    N+
Sbjct: 144 MAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 13/152 (8%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + ++  PTV  ++ A      DG +++L LWDTAG E +  +    Y ++   L+ + I 
Sbjct: 27  FPEVYVPTVFENYVAD--IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSID 84

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV---------SEAEAKA 118
           S  S E+IP       +H  P+ P+   VG K DL      R              E + 
Sbjct: 85  SPDSLENIPEKWTPEVKHFCPNVPIIL-VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 143

Query: 119 FASQ-NDILHFETSSRSGFQVENAFTAVTQEI 149
            A++     + E S+++   V   F   T+  
Sbjct: 144 MANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 5e-10
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 30  GARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPH 89
              ++L LWDTAGQE F +ITK+YYR +   +LV+  T R SFE I  W  +    +   
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI 107

Query: 90  RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
                                +   EA+  A +  +  + TS +    V   F  + ++ 
Sbjct: 108 PTALVQNKI-----DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

Query: 150 Y 150
            
Sbjct: 163 L 163

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-10
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           +I   DPT+   +  +     D   + +++ DT   +      + + R   G +LVYDIT
Sbjct: 27  FIWEYDPTLESTYRHQ--ATIDDEVVSMEILDT-AGQEDTIQREGHMRWGEGFVLVYDIT 83

Query: 68  SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILH 127
            R SFE +           +P      LVG K DL      R+VS  E +  A++     
Sbjct: 84  DRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH---SRQVSTEEGEKLATELACAF 140

Query: 128 FETSSRSG-FQVENAFTAVTQEIYNR 152
           +E S+ +G   +   F  + +E+  R
Sbjct: 141 YECSACTGEGNITEIFYELCREVRRR 166

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-09
 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDIT 67
           + +   PTV   +   +   +      LQ+ DT G  +F ++ +         +LVY IT
Sbjct: 27  FRESYIPTVEDTYRQVISCDKS--ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSIT 84

Query: 68  SRASFEHIPVWMMEAKRHIEPHRP-VFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           SR S E +     +              LVG K         REV  +EA+A A      
Sbjct: 85  SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC---DESPSREVQSSEAEALARTWKCA 141

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNRVQS 155
             ETS++    V+  F  +      R  S
Sbjct: 142 FMETSAKLNHNVKELFQELLNLEKRRTVS 170

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 7e-08
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 3   TLLYLYIQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
           +L   +++   +      ++     +   +G    LQL DTAGQ+ +    ++Y  +  G
Sbjct: 19  SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 78

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            +LVY +TS  SFE I V   +    +   +    LVG K DL      R +S  E KA 
Sbjct: 79  YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM---ERVISYEEGKAL 135

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEI 149
           A   +    E+S++      + F  +  E 
Sbjct: 136 AESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-07
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 3   TLLYLYIQISD---PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
            L  ++  + D          + R   + DG    L ++D   Q+  R +          
Sbjct: 16  ALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDA 74

Query: 60  ALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF 119
            ++VY +T + SFE      ++ +R  +       LVG K DL++S   REVS  E +A 
Sbjct: 75  YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS---REVSVDEGRAC 131

Query: 120 ASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQS 155
           A   D    ETS+     V+  F  V ++I  R  S
Sbjct: 132 AVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 167

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 21/183 (11%), Positives = 43/183 (23%), Gaps = 38/183 (20%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           T++     I +   G+       T      +  +++D  GQ   R      +      + 
Sbjct: 17  TIVKQMKIIHEAGTGIV-----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 71

Query: 63  VYDITSRASF-----------EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGV---- 107
              ++                E + ++             +   +  K    +       
Sbjct: 72  CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL 131

Query: 108 ------------PREVSEAEAKAFASQN------DILHFETSSRSGFQVENAFTAVTQEI 149
                         E +      F   N      +I    T +     V+  F AVT  I
Sbjct: 132 TICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191

Query: 150 YNR 152
              
Sbjct: 192 IKN 194

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.1 bits (105), Expect = 7e-07
 Identities = 19/159 (11%), Positives = 40/159 (25%), Gaps = 13/159 (8%)

Query: 3   TLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALL 62
           TLL++                   +     +    +D  G  + R + K+Y     G + 
Sbjct: 28  TLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHIQARRVWKNYLPAINGIVF 86

Query: 63  VYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEA-------- 114
           + D             +               ++G K+D  ++     + E         
Sbjct: 87  LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTT 146

Query: 115 ----EAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI 149
                +    +   +  F  S          F  + Q I
Sbjct: 147 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 53  YYRNSVGALLVYDITSRASFEHIPVWMMEAKR--HIEPHRPVFALVGCKLDLLQSGVPRE 110
           +   +   + V+ +    SF+ +     +              ALVG +  +  S     
Sbjct: 67  FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126

Query: 111 VSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ 154
                    A      ++ET +  G  V+  F  V Q++    +
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 170

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 8e-06
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 8   YIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYR-NSVGALLVYDI 66
               SD  V  +       M DG    + L D    +        +        L+VY I
Sbjct: 28  DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 87

Query: 67  TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDIL 126
           T RASFE      ++ +R  +       LVG K DL++    REVS +E +A A   D  
Sbjct: 88  TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR---CREVSVSEGRACAVVFDCK 144

Query: 127 HFETSSRSGFQVENAFTAVTQEIYNR 152
             ETS+     V+  F  + +++  R
Sbjct: 145 FIETSAAVQHNVKELFEGIVRQVRLR 170

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 22/186 (11%), Positives = 42/186 (22%), Gaps = 41/186 (22%)

Query: 3   TLLYLYIQISD---PTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVG 59
           T +     I     PT G+          D   +  ++ D  GQ   R      + N   
Sbjct: 17  TFIKQMRIIHGSGVPTTGIIE-----YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTS 71

Query: 60  ALLVYDITSRAS-----------FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVP 108
            + +  ++                E   ++          +  V   +  K  L +  + 
Sbjct: 72  IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY 131

Query: 109 REVSEA----------------------EAKAFASQNDILHFETSSRSGFQVENAFTAVT 146
             + +                             S   I    T +     +   F AV 
Sbjct: 132 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191

Query: 147 QEIYNR 152
             I   
Sbjct: 192 DTILQL 197

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 38  WDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVG 97
           WDTAGQE+F  +   YY  +  A++++D+TSR +++++P W  +  R          L G
Sbjct: 57  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCG 114

Query: 98  CKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN 151
            K+D+          +A++  F  + ++ +++ S++S +  E  F  + +++  
Sbjct: 115 NKVDI-----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 7/87 (8%)

Query: 3  TLLYLY--IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGA 60
          T L     I   DPT G+          +   +  ++ D  GQ   R      + +    
Sbjct: 17 TFLKQMRIIHGQDPTKGIH-----EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSI 71

Query: 61 LLVYDITSRASFEHIPVWMMEAKRHIE 87
          L +   +                  + 
Sbjct: 72 LFLVSSSEFDQVLMEDRQTNRLTESLN 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.94
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.87
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.8
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.78
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.78
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.76
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.74
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.69
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.65
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.62
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.52
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.52
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.51
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.49
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.41
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.34
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.26
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.26
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.26
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.24
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.16
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.16
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.09
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.01
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.98
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.93
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.84
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.79
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.65
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.63
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.58
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.52
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.52
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.32
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.19
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.96
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.43
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.38
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.06
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.84
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.93
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.82
d1okkd2	207	GTPase domain of the signal recognition particle r	86.88
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.67
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	81.1
d1j8yf2	211	GTPase domain of the signal sequence recognition p	81.06
d2qy9a2	211	GTPase domain of the signal recognition particle r	81.05
d1vmaa2	213	GTPase domain of the signal recognition particle r	81.03

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.3e-32  Score=193.95  Aligned_cols=148  Identities=26%  Similarity=0.323  Sum_probs=119.6

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...+.||.+ +.+.+.+.+ ++..+.+.+||++|++.+..++..+++++|++|+|||++++.||+.+..
T Consensus        15 TsLi~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~   92 (168)
T d2gjsa1          15 SALARIFGGVEDGPEAEAAG-HTYDRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE   92 (168)
T ss_dssp             HHHHHHHHTC---------C-EEEEEEEEE-TTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHhCCccCCcCCeee-eeecceeec-cccccceeeeecccccccceecccchhhhhhhceecccccccccccccc
Confidence            4688888    444556665 566677888 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+.++.........|+++||||+|+..   .+.++..++.++++.++++|++|||++|.||+++|.+|++.+..+++
T Consensus        93 ~~~~i~~~~~~~~~piilvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~  166 (168)
T d2gjsa1          93 LRVQLRRARQTDDVPIILVGNKSDLVR---SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD  166 (168)
T ss_dssp             HHHHHHHHCC--CCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcccccccceEEEeecccchhh---hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhh
Confidence            999998877667789999999999976   47789999999999999999999999999999999999999887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3e-31  Score=189.73  Aligned_cols=145  Identities=30%  Similarity=0.457  Sum_probs=131.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++ +.+.+.+.+ ++..+.+++||++|++.+..++..+++++|++++|||+++++||+.+.
T Consensus        18 Tsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~   95 (169)
T d1x1ra1          18 SALTIQFFQKIFVPDYDPTIE-DSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVD   95 (169)
T ss_dssp             HHHHHHHHHSSCCTTCCTTCC-EEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCcccCccee-ecccccccc-ccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccc
Confidence            4677877     668899987 555677777 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCc-CHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF-QVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~e~f~~i~~~i~~  151 (193)
                      .|+.++.+.......|+++||||+|+..   .+.++.+++.+++++++++|++|||+++. ||+++|..|++.+++
T Consensus        96 ~~~~~i~~~~~~~~~p~ilvgnK~Dl~~---~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1          96 RFHQLILRVKDRESFPMILVANKVDLMH---LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHTSSCCCEEEEEECTTCST---TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhhccccCccEEEEecccchhh---hceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            9999998887677899999999999987   57799999999999999999999999875 999999999998876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=190.59  Aligned_cols=148  Identities=30%  Similarity=0.499  Sum_probs=134.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.||. .++..+.+.+ +|..+.+.+||++|++++..++..+++++|++|+|||++++.||+.+.
T Consensus        20 TsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   97 (173)
T d2fn4a1          20 SALTIQFIQSYFVSDYDPTI-EDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVG   97 (173)
T ss_dssp             HHHHHHHHHSSCCSSCCTTC-CEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccccccc-ccceeeEecc-CCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhh
Confidence            4677777     67788887 4788888898 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      .|+..+.........|++|||||+|+..   .+.+..+++..++..++++|++|||++|.||+++|.++++.+.+..+
T Consensus        98 ~~~~~i~~~~~~~~~p~ilvgnK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1          98 KLFTQILRVKDRDDFPVVLVGNKADLES---QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTSSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHhccCCCceEEEEEeechhh---ccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhc
Confidence            9999998877677889999999999976   46788999999999999999999999999999999999999877544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-31  Score=189.15  Aligned_cols=145  Identities=30%  Similarity=0.409  Sum_probs=131.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.||++.++ .+.+.+ ++..+.+.+||++|.+.+..++..++.++|++|+|||+++++||+.+.
T Consensus        18 TsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~   95 (167)
T d1xtqa1          18 SSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK   95 (167)
T ss_dssp             HHHHHHHHHSCCCSCCCSSCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCcceeccc-ceEEec-CcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhh
Confidence            3677777     668899998665 567788 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+........+|+++||||.|+..   .+.++.+++.+++++++++|++|||++|.||+++|..|++.+.+
T Consensus        96 ~~~~~i~~~~~~~~~piilvgnK~Dl~~---~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1          96 VIHGKLLDMVGKVQIPIMLVGNKKDLHM---ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccccccceeeecccccccc---ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            9999999887777899999999999976   47799999999999999999999999999999999999988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=2.8e-31  Score=189.74  Aligned_cols=145  Identities=32%  Similarity=0.453  Sum_probs=128.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||+|.++ ...+.+ ++..+.+.+||++|++++..++..+++++|++|+|||+++++||+.+.
T Consensus        18 Tsli~~~~~~~f~~~~~~T~~~~~-~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   95 (168)
T d1u8za_          18 SALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATA   95 (168)
T ss_dssp             HHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCCcccccc-cccccc-ccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHH
Confidence            3677777     678999998655 456677 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+.++.......+.|+++||||.|+.+   .+.++.+++.++++..+++|++|||++|.||+++|.+|++.+..
T Consensus        96 ~~~~~i~~~~~~~~~piiivgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_          96 DFREQILRVKEDENVPFLLVGNKSDLED---KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHCCTTSCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhCCCCCcEEEEeccccccc---cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            9999999887777899999999999976   47799999999999999999999999999999999999998754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-31  Score=187.97  Aligned_cols=145  Identities=34%  Similarity=0.635  Sum_probs=125.9

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++.++..+.+.. ++..+.+.+||++|++++..+++.+++++|++|+|||+++++||+.+.
T Consensus        17 TsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~   95 (167)
T d1z08a1          17 TSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK   95 (167)
T ss_dssp             HHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccccccccchheeeecc-CCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhh
Confidence            4677777     7789999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.... ....|+++||||.|+..   .+.++.+++.+++++++++|++|||++|.||+++|.+|++.+++
T Consensus        96 ~~~~~~~~~~-~~~~~~ilvgnK~Dl~~---~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1          96 NWVKELRKML-GNEICLCIVGNKIDLEK---ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHH-GGGSEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             hhhhhccccc-ccccceeeecccccccc---ccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            9999887665 34578889999999977   47899999999999999999999999999999999999998864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.1e-31  Score=187.51  Aligned_cols=144  Identities=32%  Similarity=0.564  Sum_probs=132.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||++.++....... ++..+.+.+||++|++++..++..++++++++++|||++++.||+.+.
T Consensus        16 SsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   94 (164)
T d1z2aa1          16 SSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS   94 (164)
T ss_dssp             HHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCcccccccccccceeeeee-cCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcc
Confidence            3677777     6789999999999999888 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|++++.....  +.|+++||||+|+.+   .+.++.+++.++++.++++|++|||++|.||+++|++|++++++
T Consensus        95 ~~~~~i~~~~~--~~~iilVgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1          95 SWREKVVAEVG--DIPTALVQNKIDLLD---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHC--SCCEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             cccccccccCC--CceEEEeeccCCccc---ceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence            99999988753  588999999999976   47789999999999999999999999999999999999998863

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-30  Score=184.52  Aligned_cols=146  Identities=29%  Similarity=0.462  Sum_probs=129.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.||.+ +.....+.+ ++..+.+++||++|.+.+..++..+++++|++++|||+++++||+.+.
T Consensus        19 TsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   96 (171)
T d2erya1          19 SALTIQFIQSYFVTDYDPTIE-DSYTKQCVI-DDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIY   96 (171)
T ss_dssp             HHHHHHHHHSCCCSSCCTTCC-EEEEEEEEE-TTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCcccCcccc-cceeeeeee-cccccccccccccccccccccccccccccceEEEeeccccccchhhHH
Confidence            4678887     678899987 778888888 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+.++.........|+++||||.|+..   .+.++.+++.++++..+++|++|||++|.||+++|.+|++.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~p~ilvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1          97 KFQRQILRVKDRDEFPMILIGNKADLDH---QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHHTSSCCSEEEEEECTTCTT---SCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHhhcccCCCCEEEEEeccchhh---hccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            9999998887777889999999999977   477899999999999999999999999999999999999988643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=185.02  Aligned_cols=146  Identities=29%  Similarity=0.394  Sum_probs=127.9

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||+|.++.... .. ++..+.+++||++|++.+. ....++++++++++|||+++++||..+.
T Consensus        16 Tsli~r~~~~~f~~~~~pTi~~~~~~~~-~~-~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~   92 (168)
T d2atva1          16 SALVVRFLTKRFIWEYDPTLESTYRHQA-TI-DDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVL   92 (168)
T ss_dssp             HHHHHHHHHSCCCSCCCTTCCEEEEEEE-EE-TTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCccCCceeccccccc-cc-cccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhh
Confidence            4788888     6789999987766554 45 8899999999999998874 4667899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCc-CHHHHHHHHHHHHHHHh
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGF-QVENAFTAVTQEIYNRV  153 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~e~f~~i~~~i~~~~  153 (193)
                      .|+..+.......+.|+++||||+|+..   .+.++.+++.+++++++++|++|||++|. ||+++|.+|++.+.+++
T Consensus        93 ~~~~~~~~~~~~~~~piilvgnK~Dl~~---~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1          93 PLKNILDEIKKPKNVTLILVGNKADLDH---SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHHTTSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccCcceeeeccchhhhh---hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            9888777766667899999999999976   47799999999999999999999999998 59999999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-30  Score=184.09  Aligned_cols=146  Identities=39%  Similarity=0.681  Sum_probs=133.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+.+.||++.++..+.+.+ ++..+.+.+|||+|+++|..+++.++++++++++|||++++.+|..+.
T Consensus        19 TsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   97 (171)
T d2ew1a1          19 TCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP   97 (171)
T ss_dssp             HHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCcccccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhh
Confidence            3677777     6678999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+.... ....|+++||||.|+..   ...+..+++.++++..+++|++|||++|.||+++|.+|+++++..
T Consensus        98 ~~~~~i~~~~-~~~~~~ilvgnK~D~~~---~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1          98 EWLREIEQYA-SNKVITVLVGNKIDLAE---RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECGGGGG---GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccc-cccccEEEEEeeccccc---ccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            9999988764 45689999999999876   467889999999999999999999999999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4e-30  Score=183.73  Aligned_cols=145  Identities=35%  Similarity=0.600  Sum_probs=131.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.+.||.+.+.....+.. ++..+.+++|||+|++++..++..+++++|++|+|||+++++++..+.
T Consensus        19 TsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~   97 (169)
T d3raba_          19 TSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ   97 (169)
T ss_dssp             HHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHcCCCCcccccccccceeeEEEEe-ecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhh
Confidence            3677777     6788999999999999988 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.... ....|+++||||.|+.+   .+.++.+++..+++..+++|++|||++|.||+++|++|++.+++
T Consensus        98 ~~~~~~~~~~-~~~~~iivv~nK~D~~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_          98 DWSTQIKTYS-WDNAQVLLVGNKCDMED---ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHC-CSCCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             hhhhhhhccc-CCcceEEEEEeeccccc---ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9998876654 55789999999999877   46788999999999999999999999999999999999998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-30  Score=185.84  Aligned_cols=147  Identities=25%  Similarity=0.325  Sum_probs=124.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||++ +.......+ ++..+.+++||++|+++|..++..+++++|++|+|||+++++||+++.
T Consensus        17 TSli~r~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~   94 (191)
T d2ngra_          17 TCLLISYTTNKFPSEYVPTVF-DNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK   94 (191)
T ss_dssp             HHHHHHHHHSCCCSSCCCCSE-EEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCcee-eecceeEee-CCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHH
Confidence            4678777     778999998 566677777 889999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+....... ..+.|+++||||.|+...         ...+.++.+++.+++++.+ ++|++|||++|.||+++|+.++
T Consensus        95 ~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~  173 (191)
T d2ngra_          95 EKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI  173 (191)
T ss_dssp             HTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Confidence            7655555544 346899999999998532         1235689999999999964 7999999999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      ..+++
T Consensus       174 ~~~~~  178 (191)
T d2ngra_         174 LAALE  178 (191)
T ss_dssp             HHHTS
T ss_pred             HHHhc
Confidence            87654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.1e-30  Score=181.15  Aligned_cols=143  Identities=36%  Similarity=0.636  Sum_probs=130.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.|+++.+.....+.. ++..+.+.+||++|++.+...+..++.+++++++|||++++.||+.+.
T Consensus        14 TsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~   92 (164)
T d1yzqa1          14 TSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT   92 (164)
T ss_dssp             HHHHHHHHHSCCCSSCCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCccccceeeeccceeecc-CCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhH
Confidence            4678887     6789999998888888888 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.... ...+|+++||||.|+.+   .+.+..+++.++++.++++|++|||++|.||+++|.+|++.+
T Consensus        93 ~~~~~~~~~~-~~~~~iilvgnK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1          93 KWIDDVRTER-GSDVIIMLVGNKTDLAD---KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             HHHHHHHHHH-TTSSEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             hhHHHHHHhc-CCCceEEEEecccchhh---hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            9999988775 34689999999999976   467888999999999999999999999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.7e-30  Score=184.58  Aligned_cols=146  Identities=23%  Similarity=0.306  Sum_probs=125.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.||++ ++..+.+.. ++..+.+.+||++|++.+..++..+++++|++++|||+++++||+++.
T Consensus        23 TsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~  100 (185)
T d2atxa1          23 TCLLMSYANDAFPEEYVPTVF-DHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVK  100 (185)
T ss_dssp             HHHHHHHHHSSCCCSCCCSSC-CCEEEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCcCCCcee-eeeeEEEee-CCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHH
Confidence            4678887     678999997 677788887 899999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+.+.. ..+.|+++||||+|+.++         ...+.++.+++.+++++.+ +.|+||||++|.||+++|+.++
T Consensus       101 ~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li  179 (185)
T d2atxa1         101 EEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI  179 (185)
T ss_dssp             HTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHH
Confidence            6555555544 346889999999999652         2246789999999999987 6999999999999999999999


Q ss_pred             HHHH
Q psy38           147 QEIY  150 (193)
Q Consensus       147 ~~i~  150 (193)
                      +.++
T Consensus       180 ~~il  183 (185)
T d2atxa1         180 IAIL  183 (185)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.9e-30  Score=181.81  Aligned_cols=144  Identities=27%  Similarity=0.430  Sum_probs=128.5

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||++.. +...+.+ ++..+.+++||++|++.+..++..+++++|++|+|||+++++||+++.
T Consensus        17 Tsli~r~~~~~f~~~~~~t~~~~-~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~   94 (167)
T d1c1ya_          17 SALTVQFVQGIFVEKYDPTIEDS-YRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQ   94 (167)
T ss_dssp             HHHHHHHHHCCCCCSCCCCSEEE-EEEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHcCCCCCccCCccccc-cceeEEe-eeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHH
Confidence            4778887     67899999854 4566677 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+.+.......|++|||||.|+..   ...+..+++..++++ .+++|++|||++|.||+++|.+|++.+.
T Consensus        95 ~~~~~~~~~~~~~~~p~ilvgnK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_          95 DLREQILRVKDTEDVPMILVGNKCDLED---ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHCCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCeEEEEEEecCccc---ccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            9999998876667789999999999977   467888999999987 4689999999999999999999998774

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=186.38  Aligned_cols=142  Identities=24%  Similarity=0.498  Sum_probs=126.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+.|.||+|.++..+.+.. ++..+.+.+||++|++.+..+++.++++++++++|||+++++||+.+.
T Consensus        17 Tsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~   95 (170)
T d1i2ma_          17 TTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP   95 (170)
T ss_dssp             HHHHHTTC-----CCEEEETTEEEEEEEECB-TTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHH
T ss_pred             HHHHHHHHhCCCCcccccceecccccccccc-ccccccccccccccccccceecchhcccccchhhccccccccccchhH
Confidence            4678887     6788999999999999988 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+....  .++|+++||||.|+...   +  ..+++..++...+++|++|||++|.||+++|.+|++.++.
T Consensus        96 ~~~~~~~~~~--~~~piilvgnK~Dl~~~---~--~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_          96 NWHRDLVRVC--ENIPIVLCGNKVDIKDR---K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             HHHHHHHHHH--CSCCEEEEEECCCCSCS---C--CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             HHHHHHhhcc--CCCceeeecchhhhhhh---h--hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            9999988765  36899999999999763   2  2234567888899999999999999999999999998874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=180.72  Aligned_cols=143  Identities=43%  Similarity=0.782  Sum_probs=130.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+++.|+.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|+|||+++++||+.+.
T Consensus        18 Tsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~   96 (166)
T d1z0fa1          18 SCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS   96 (166)
T ss_dssp             HHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCcccccccccceeEEEEE-CCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHH
Confidence            4678777     6678888888999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.... ....|++++|||.|+..   ...+..+++..+++..+++|++|||++|.||+++|.+|++.+
T Consensus        97 ~~~~~~~~~~-~~~~~iilvgnK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1          97 SWLTDARNLT-NPNTVIILIGNKADLEA---QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc-cccceEEEEcccccchh---hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999888764 55789999999999976   467888999999999999999999999999999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=186.00  Aligned_cols=143  Identities=27%  Similarity=0.317  Sum_probs=126.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++ +.+.....+ ++..+.+.+||++|++.+...+..+++++|++|+|||++++++|..+.
T Consensus        16 TsLi~r~~~~~f~~~~~~T~~-~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~   93 (171)
T d2erxa1          16 SSLVLRFVKGTFRESYIPTVE-DTYRQVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELK   93 (171)
T ss_dssp             HHHHHHHHTCCCCSSCCCCSC-EEEEEEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred             HHHHHHHHhCCCCCccCccee-eccccceee-ccccceeccccccccccccccccccccceeEEEEEeecccccchhccc
Confidence            4677777     568899998 455566677 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE-PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.+... ....|++|||||+|+..   .+.++.+++.++++.++++|++|||++|.||+++|..|++.+
T Consensus        94 ~~~~~~~~~~~~~~~~piilVgnK~Dl~~---~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1          94 PIYEQICEIKGDVESIPIMLVGNKCDESP---SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             HHHHHHHHHHC---CCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             chhhhhhhhhccCCCCcEEEEeecccccc---cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            99998887654 45689999999999976   477899999999999999999999999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-29  Score=180.08  Aligned_cols=151  Identities=44%  Similarity=0.738  Sum_probs=137.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+++.||.+.+.....+.. ++..+.+++||++|++++..+++.++++++++|+|||++++++|..+.
T Consensus        19 Tsll~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   97 (174)
T d2bmea1          19 SCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALT   97 (174)
T ss_dssp             HHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCcccccccccceeeEEEEe-cCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHh
Confidence            4677777     6788999988888888888 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.... ..+.|+++||||.|+..   ...+....+..+++..+++|++|||++|.||+++|.++++.++++++.+
T Consensus        98 ~~~~~~~~~~-~~~~piivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1          98 NWLTDARMLA-SQNIVIILCGNKKDLDA---DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             hhhccccccc-CCceEEEEEEecccccc---hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            9999988875 45789999999999876   4678888999999999999999999999999999999999999988776


Q ss_pred             C
Q psy38           157 D  157 (193)
Q Consensus       157 ~  157 (193)
                      |
T Consensus       174 e  174 (174)
T d2bmea1         174 E  174 (174)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-29  Score=181.02  Aligned_cols=147  Identities=26%  Similarity=0.356  Sum_probs=125.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||++ +.......+ ++..+.+++||++|++.|..++..+++++|++|+|||+++++||+++.
T Consensus        16 TsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~   93 (177)
T d1kmqa_          16 TCLLIVNSKDQFPEVYVPTVF-ENYVADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP   93 (177)
T ss_dssp             HHHHHHHHHSCCCSSCCCCSE-EEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCcee-eeccccccc-cccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHH
Confidence            4677777     678899997 666677777 899999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---------CCCccCHHHHHHHHHhCCC-cEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSG---------VPREVSEAEAKAFASQNDI-LHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+..+..... .+.|++|||||+|+....         ..+.++.+++.++++..+. +|+||||++|.||+++|+.++
T Consensus        94 ~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~  172 (177)
T d1kmqa_          94 EKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT  172 (177)
T ss_dssp             HTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHH
Confidence            76655555543 468999999999996421         2356889999999999885 899999999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      +.+++
T Consensus       173 ~~~l~  177 (177)
T d1kmqa_         173 RAALQ  177 (177)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-30  Score=182.46  Aligned_cols=144  Identities=31%  Similarity=0.478  Sum_probs=131.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.+.||++ ++....+.+ ++..+.+++||++|++.+..++..+++++|++++|||++++++|.++.
T Consensus        17 TsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~   94 (167)
T d1kaoa_          17 SALTVQFVTGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK   94 (167)
T ss_dssp             HHHHHHHHHSCCCSCCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCccCCcee-eeeeeeeec-CcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhh
Confidence            4778887     678899997 777788888 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+.........|++|||||+|+..   .+.+..+++..+++..+++|++|||++|.||+++|.+|++++.
T Consensus        95 ~~~~~~~~~~~~~~~piilvgnK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_          95 PMRDQIIRVKRYEKVPVILVGNKVDLES---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEECGGGGG---GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhccCCCCCEEEEEEccchhh---cccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            9999998876667889999999999976   4678889999999999999999999999999999999998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-29  Score=180.94  Aligned_cols=146  Identities=36%  Similarity=0.686  Sum_probs=132.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||+|.++..+.+.. ++..+.+.+||++|++++..+++.++.++|++|+|||++++.||+.+.
T Consensus        17 TsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   95 (170)
T d1ek0a_          17 SSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKAR   95 (170)
T ss_dssp             HHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccccccccceeecccccc-ccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhh
Confidence            3677777     6789999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.... ....|+++|+||.|+..+...+.++.+++.+++++.+++|++|||++|.||+++|.+|++++
T Consensus        96 ~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_          96 HWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             hhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            9998877764 45678889999999976655688999999999999999999999999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.3e-29  Score=180.38  Aligned_cols=148  Identities=39%  Similarity=0.675  Sum_probs=113.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+++.||++.++..+.+.+ ++..+.+.+||++|++.+..++..+++++|++|+|||++++.||+.+.
T Consensus        20 TsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   98 (173)
T d2fu5c1          20 TCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR   98 (173)
T ss_dssp             --------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCccCccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHH
Confidence            5788888     5678899999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      .|+..+.... ....|+++|+||.|+..   .+....+++..++...+++|++|||++|.||+++|.+|++.+..+++
T Consensus        99 ~~~~~~~~~~-~~~~~iilv~~k~D~~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1          99 NWIRNIEEHA-SADVEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEEC--CCS---CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhc-cCCceEEEEEecccchh---hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            9999987654 55688999999999977   46777888999999999999999999999999999999999987654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.5e-29  Score=178.44  Aligned_cols=143  Identities=34%  Similarity=0.632  Sum_probs=130.2

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||.+.++....... ++....+.+||++|++++..++..++++++++|+|||++++++|+.+.
T Consensus        18 Tsli~rl~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   96 (167)
T d1z0ja1          18 SSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK   96 (167)
T ss_dssp             HHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccccccccccccccccc-cccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHH
Confidence            4678777     7788999988888888887 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      .|+..+.... ....|+++||||.|+.+   .+.+..+++.++++..+++|++|||++|.||+++|.+|++++
T Consensus        97 ~~~~~~~~~~-~~~~~iilvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1          97 NWVRELRQHG-PPSIVVAIAGNKCDLTD---VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHS-CTTSEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             Hhhhhhhhcc-CCcceEEEecccchhcc---ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            9998887765 45789999999999976   477899999999999999999999999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-29  Score=179.45  Aligned_cols=150  Identities=47%  Similarity=0.831  Sum_probs=131.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+.|.|+.+.+........ ++..+.+.+||++|++.+..+++.+++++|++|+|||++++.+|+.+.
T Consensus        17 Tsli~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~   95 (173)
T d2a5ja1          17 SCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT   95 (173)
T ss_dssp             HHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHhcCCCCCCcccceeeccceeeeee-eeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHH
Confidence            4678877     6778888888888888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.... ..++|++|||||+|+..   .+.+..+++..+++..+++|++|||++|.||+++|.++++.++++.+++
T Consensus        96 ~~~~~~~~~~-~~~~piilv~nK~D~~~---~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~~  171 (173)
T d2a5ja1          96 SWLEDARQHS-SSNMVIMLIGNKSDLES---RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC-CCCCeEEEEecCCchhh---hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHcc
Confidence            9999998764 45789999999999876   4678899999999999999999999999999999999999999887765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.7e-29  Score=181.98  Aligned_cols=150  Identities=41%  Similarity=0.630  Sum_probs=135.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ...+.||++..+....+.+ ++..+.+.+|||+|++++..++..++++++++|+|||++++++|..+.
T Consensus        20 Tsli~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~   98 (194)
T d2bcgy1          20 SCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK   98 (194)
T ss_dssp             HHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCcCCccceeEEEEEEEE-eeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHh
Confidence            4677877     6789999998888888988 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+.... ....|+++||||.|+.+   ...+..+++..++...++.|++|||++|.||+++|.++++.+.+.....
T Consensus        99 ~~~~~~~~~~-~~~~~iilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1          99 MWLQEIDRYA-TSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECTTCTT---TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHH
T ss_pred             hhhhhhhhcc-cCCceEEEEEecccccc---ccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhhhc
Confidence            9998887664 56789999999999987   5778899999999999999999999999999999999999998765443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=181.92  Aligned_cols=146  Identities=28%  Similarity=0.390  Sum_probs=125.3

Q ss_pred             eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCC---CccccccchhhhccCccEEEEEEeCCChhHH
Q psy38             2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTA---GQERFRSITKSYYRNSVGALLVYDITSRASF   72 (193)
Q Consensus         2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~---g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~   72 (193)
                      +||++||      ...+.||+|.+++.+.+.+ +++.+.+.+||++   |+++|  ++..+++++|++|+|||+++++||
T Consensus        17 TsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~   93 (172)
T d2g3ya1          17 STLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF   93 (172)
T ss_dssp             HHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHH
T ss_pred             HHHHHHHHhCcCCccccccceeeecceeeecc-CCceeeeeeeccccccccccc--cccccccccceeeeeecccccchh
Confidence            4688887      2355677888999999999 9999999999965   45554  567889999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            73 EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        73 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +.+..|+..+.......++|+++||||+|+..   .+.++.+++.+++..++++|++|||++|.||+++|.+|++++..+
T Consensus        94 ~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~---~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1          94 EKASELRIQLRRARQTEDIPIILVGNKSDLVR---CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccCCceEEEEeccccccc---cccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            99999999998876666899999999999976   477899999999999999999999999999999999999998765


Q ss_pred             h
Q psy38           153 V  153 (193)
Q Consensus       153 ~  153 (193)
                      +
T Consensus       171 r  171 (172)
T d2g3ya1         171 R  171 (172)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-30  Score=184.74  Aligned_cols=150  Identities=39%  Similarity=0.643  Sum_probs=132.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCC----------cEEEEEEeeCCCccccccchhhhccCccEEEEEEeC
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDG----------ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDI   66 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~----------~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   66 (193)
                      +||++||     .+.+.||.+.++....+.+ ++          ..+.+.+|||+|+++|..++..+++++|++|+|||+
T Consensus        19 TsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~   97 (186)
T d2f7sa1          19 TTFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDL   97 (186)
T ss_dssp             HHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             HHHHHHHhcCCCCCccCCcccceeeEEEEEE-ecccccccccccceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEec
Confidence            3677777     5677888888888877766 33          357899999999999999999999999999999999


Q ss_pred             CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38            67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      +++.+|+.+..|+..+........+|+++||||.|+..   .+.++.+++.+++++++++|++|||++|.||+++|.+|+
T Consensus        98 ~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~---~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  174 (186)
T d2f7sa1          98 TSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL  174 (186)
T ss_dssp             TCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred             cccccceeeeeccchhhhhccCCCceEEEEeeeccchh---hhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999888776667889999999999977   578999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy38           147 QEIYNRVQS  155 (193)
Q Consensus       147 ~~i~~~~~~  155 (193)
                      +.+.++.++
T Consensus       175 ~~i~~k~~~  183 (186)
T d2f7sa1         175 DLIMKRMEQ  183 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-29  Score=179.04  Aligned_cols=144  Identities=35%  Similarity=0.652  Sum_probs=131.3

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+++.||.+.++....+.. ++..+.+.+||++|++.+..++..+++++++++++||+++.++|+.+.
T Consensus        20 TsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   98 (170)
T d1r2qa_          20 SSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK   98 (170)
T ss_dssp             HHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccccccccccccceeec-cceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHH
Confidence            4677877     6788999999988888888 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .|+..+.... ..+.|+++||||+|+..   .+.++.+++.+++..++++|++|||++|.||+++|.+|++++.
T Consensus        99 ~~~~~~~~~~-~~~~~iilvgnK~Dl~~---~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_          99 NWVKELQRQA-SPNIVIALSGNKADLAN---KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECGGGGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             HHhhhhhhcc-CCCceEEeecccccccc---cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999987764 45689999999999977   5789999999999999999999999999999999999988653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=175.98  Aligned_cols=151  Identities=44%  Similarity=0.704  Sum_probs=133.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ...+.|+.+.+.....+.+ ++..+.+.+||++|++.|..++..++++++++|+|||+++++||..+.
T Consensus        18 TsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~   96 (175)
T d2f9la1          18 SNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVE   96 (175)
T ss_dssp             HHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCcccccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHH
Confidence            4678887     5688888888888899988 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      .|+..+..... ...|+++||||+|+.+   .+....+.+..+....+.+|++|||++|.||+++|.++++.+++...++
T Consensus        97 ~~~~~i~~~~~-~~~piilvgnK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~~~  172 (175)
T d2f9la1          97 RWLKELRDHAD-SNIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK  172 (175)
T ss_dssp             HHHHHHHHHSC-TTCEEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhcC-CCCcEEEEEeeecccc---cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhhhc
Confidence            99999988764 5689999999999976   3567777888889999999999999999999999999999998877665


Q ss_pred             C
Q psy38           157 D  157 (193)
Q Consensus       157 ~  157 (193)
                      +
T Consensus       173 q  173 (175)
T d2f9la1         173 Q  173 (175)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.3e-29  Score=176.29  Aligned_cols=144  Identities=32%  Similarity=0.454  Sum_probs=129.6

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .++|.||++.++... +.. ++..+.+.+||++|++.+...+..++++++++++|||++++.+|+.+.
T Consensus        17 Tsli~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~   94 (166)
T d1ctqa_          17 SALTIQLIQNHFVDEYDPTIEDSYRKQ-VVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH   94 (166)
T ss_dssp             HHHHHHHHHCCCCCSCCCCSEEEEEEE-EEE-TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCccCCccceeeccc-eee-eceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHH
Confidence            4778887     678899998666554 556 888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+..+.......+.|+++||||.|+..    +.+..+++.++++..+++|++|||++|.||+++|.+|++.+.+
T Consensus        95 ~~~~~i~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_          95 QYREQIKRVKDSDDVPMVLVGNKCDLAA----RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHTCSSCCEEEEEECTTCSC----CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCeEEEEeccccccc----ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            9999999887777899999999999965    6688899999999999999999999999999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=175.51  Aligned_cols=144  Identities=39%  Similarity=0.704  Sum_probs=121.8

Q ss_pred             eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||++||      ...+.|+++.++....+.. ++..+.+.+|||+|++.+..++..+++++|++++|||++++++|..+
T Consensus        20 Tsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~   98 (170)
T d2g6ba1          20 TCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI   98 (170)
T ss_dssp             HHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTH
T ss_pred             HHHHHHHHhCCCCcccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhh
Confidence            4677877      3455677888999988988 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      ..|+..+.... ....|+++|+||.|+..   ...++.+++..+++..+++|++|||++|.||+++|++|++.+.
T Consensus        99 ~~~~~~~~~~~-~~~~~iilv~~k~d~~~---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1          99 QAWLTEIHEYA-QHDVALMLLGNKVDSAH---ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHS-CTTCEEEEEEECCSTTS---CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcc-CCCceEEEEEeeechhh---cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            99998887765 45678889999999977   5778999999999999999999999999999999999998875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.5e-28  Score=174.19  Aligned_cols=147  Identities=37%  Similarity=0.619  Sum_probs=134.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+++.++.+.++..+.+.+ ++..+.+.+|||+|++++..+++.+++++|++|+|||++++.+++.+.
T Consensus        21 Tsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~   99 (177)
T d1x3sa1          21 SSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD   99 (177)
T ss_dssp             HHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCccccceeecceeEEEEE-eccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccch
Confidence            3677877     6788888888888888888 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      .|+.++.........|+++++||.|...    +.+...++.++++.++++|++|||++|.||+++|+++++.+++..
T Consensus       100 ~~~~~i~~~~~~~~~~i~~~~nk~d~~~----~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         100 NWLNELETYCTRNDIVNMLVGNKIDKEN----REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHTTCCSCSCCEEEEEEECTTSSS----CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             hhhhhhcccccccceeeEEEeecccccc----ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccCc
Confidence            9999998876677789999999999765    678999999999999999999999999999999999999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.4e-28  Score=173.04  Aligned_cols=145  Identities=36%  Similarity=0.619  Sum_probs=125.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.+.||++.++....+.+ ++..+.+.+|||+|++.|..++..++++++++|+|||++++.||+.+.
T Consensus        16 TSli~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   94 (166)
T d1g16a_          16 SCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIK   94 (166)
T ss_dssp             HHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCccCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHH
Confidence            4678877     6678999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+..+.... ....|++++++|.|+..    +.+..+++.+++..++++|++|||++|.||+++|.+|++.+.++
T Consensus        95 ~~~~~~~~~~-~~~~~~i~~~~k~d~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_          95 QWFKTVNEHA-NDEAQLLLVGNKSDMET----RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHS-CTTCEEEEEEECTTCTT----CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhccc-cCcceeeeecchhhhhh----hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            9988888765 45678889999999865    56788899999999999999999999999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-28  Score=174.65  Aligned_cols=150  Identities=35%  Similarity=0.563  Sum_probs=118.1

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+.|.||.+.+.........++..+.+.+||++|++++..++..+++.++++++|||++++.||+.+.
T Consensus        16 SsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~   95 (175)
T d1ky3a_          16 TSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIK   95 (175)
T ss_dssp             HHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhh
Confidence            3678887     56788998877777777764667788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|+.++.....   ....|+++||||+|+.+.  .+.++.+++.++++.++ ++|++|||++|.||+++|.+|++.++++
T Consensus        96 ~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~--~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_          96 SWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhhcccccCcEEEEecccchhhh--hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhc
Confidence            99999987654   346899999999999752  35578899999999986 6999999999999999999999999886


Q ss_pred             h
Q psy38           153 V  153 (193)
Q Consensus       153 ~  153 (193)
                      .
T Consensus       174 ~  174 (175)
T d1ky3a_         174 N  174 (175)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.5e-28  Score=175.20  Aligned_cols=147  Identities=24%  Similarity=0.331  Sum_probs=125.4

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.||++ +...+.+.+ ++..+.+++||++|++.+..+++.+++++|++|+|||+++++||+.+.
T Consensus        16 Tsli~r~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~   93 (179)
T d1m7ba_          16 TALLHVFAKDCFPENYVPTVF-ENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL   93 (179)
T ss_dssp             HHHHHHHHHSCCCSSCCCCSE-EEEEEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCccCCcee-ecccccccc-cceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHH
Confidence            4677777     678999996 677777788 899999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCCC-cEEEecCCCCcC-HHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQNDI-LHFETSSRSGFQ-VENAFTAV  145 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~e~f~~i  145 (193)
                      .|+..+..... .++|+++||||.|+...         ...+.++.+++..++++.+. .|+||||++|.+ |+++|+.+
T Consensus        94 ~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~  172 (179)
T d1m7ba_          94 KKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA  172 (179)
T ss_dssp             HTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHH
T ss_pred             HHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHH
Confidence            86666555443 47899999999998531         12366899999999999774 899999999984 99999999


Q ss_pred             HHHHHH
Q psy38           146 TQEIYN  151 (193)
Q Consensus       146 ~~~i~~  151 (193)
                      ++.+++
T Consensus       173 ~~~~l~  178 (179)
T d1m7ba_         173 TLACVN  178 (179)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-27  Score=168.70  Aligned_cols=145  Identities=33%  Similarity=0.578  Sum_probs=126.0

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .++|.+|++..+....+.. ++..+.+.+||++|+.++...+..++..+++++++||.+++.||+.+.
T Consensus        20 SSli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~   98 (174)
T d1wmsa_          20 SSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS   98 (174)
T ss_dssp             HHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCccccceeeeeeeeeeee-cCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhh
Confidence            3677777     6689999998888888888 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|++++.....   ....|+++||||.|+.+    +.+..+++.+++++.+ ++|++|||++|.||+++|+++++.++.
T Consensus        99 ~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~----~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_          99 NWKKEFIYYADVKEPESFPFVILGNKIDISE----RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS----CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhccccCCCceEEEeccccchhh----ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            99999877643   34689999999999965    6789999999998864 799999999999999999999998863

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.3e-27  Score=169.69  Aligned_cols=141  Identities=42%  Similarity=0.694  Sum_probs=125.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccccc-chhhhccCccEEEEEEeCCChhHHhhH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRS-ITKSYYRNSVGALLVYDITSRASFEHI   75 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~   75 (193)
                      +||++||     .+.+.||.+..+..+...+ .+....+.+||++|...+.. .++.+++++|++|+|||+++++||+.+
T Consensus        16 TsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~   94 (165)
T d1z06a1          16 TCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL   94 (165)
T ss_dssp             HHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred             HHHHHHHHhCCCCCccCcccccccceeeeee-eccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhh
Confidence            4677777     6788999988888888888 88999999999999877654 568899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCC---CcCHHHHHHHHH
Q psy38            76 PVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRS---GFQVENAFTAVT  146 (193)
Q Consensus        76 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~e~f~~i~  146 (193)
                      ..|+.++.++....++|++|||||.|+.+   .+.++.+++.+++++++++|++|||++   +.||+++|.+|+
T Consensus        95 ~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1          95 PAWIEECKQHLLANDIPRILVGNKCDLRS---AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             HHHHHHHHHHCCCSCCCEEEEEECTTCGG---GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             hhhhHHHHhhccCCCCeEEEEeccccchh---ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            99999999887777899999999999977   467999999999999999999999987   459999999874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=172.51  Aligned_cols=147  Identities=27%  Similarity=0.358  Sum_probs=123.7

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +|||+||     .+.|.||++ ++....+.. ++..+.+.+||++|++.+..++..+++++|++++|||+++++||+++.
T Consensus        19 Tsli~~~~~~~f~~~~~~ti~-~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~   96 (183)
T d1mh1a_          19 TCLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVR   96 (183)
T ss_dssp             HHHHHHHHHSSCCSSCCCCSC-CEEEEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccccccee-eceeeeeec-cCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHH
Confidence            4678887     778999997 667677777 999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCC---------CCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQS---------GVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      .|+....... ..+.|++|||||+|+...         .....+...++..++++.+ ++|+||||++|.||+++|.+++
T Consensus        97 ~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~  175 (183)
T d1mh1a_          97 AKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  175 (183)
T ss_dssp             HTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHH
Confidence            7544444443 346899999999998542         1124567788999999887 6999999999999999999999


Q ss_pred             HHHHH
Q psy38           147 QEIYN  151 (193)
Q Consensus       147 ~~i~~  151 (193)
                      +.++.
T Consensus       176 ~~il~  180 (183)
T d1mh1a_         176 RAVLC  180 (183)
T ss_dssp             HHHSC
T ss_pred             HHHcC
Confidence            98863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1e-26  Score=168.03  Aligned_cols=150  Identities=32%  Similarity=0.580  Sum_probs=131.9

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     ..+|.||+|.++..+.+.. .+..+.+.+||++|+..+...+..++..+++++++||.+++.+|..+.
T Consensus        16 SSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~   94 (184)
T d1vg8a_          16 TSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD   94 (184)
T ss_dssp             HHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred             HHHHHHHHhCCCCCCcCCccceeeeeeeeee-CCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcch
Confidence            3677776     7789999999999999998 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC---CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIE---PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus        77 ~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      .|++++.....   ....|+++||||+|+.+    +.+..+++.+++.. .+++|++|||++|.||+++|+++++.++++
T Consensus        95 ~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~  170 (184)
T d1vg8a_          95 SWRDEFLIQASPRDPENFPFVVLGNKIDLEN----RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC----CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhccccccCCCEEEEEEeecccc----cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhc
Confidence            99999987654   23579999999999976    55777777777755 578999999999999999999999999987


Q ss_pred             hcCC
Q psy38           153 VQSG  156 (193)
Q Consensus       153 ~~~~  156 (193)
                      ..+.
T Consensus       171 ~~~~  174 (184)
T d1vg8a_         171 ETEV  174 (184)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=165.88  Aligned_cols=146  Identities=19%  Similarity=0.306  Sum_probs=122.1

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    .+.+.||.+ +.+.+.+.+ +|..+.+.+|||+|+..+     .|++++|++|+|||+++++||+.+..
T Consensus        19 TsLi~~~~~~~f~~~~~t~~-~~~~~~i~v-~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~   91 (175)
T d2bmja1          19 SSLIHRFLTGSYQVLEKTES-EQYKKEMLV-DGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSR   91 (175)
T ss_dssp             HHHHHHHHHSCCCCCCCSSC-EEEEEEEEE-TTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcCCccc-eeEEEEeec-CceEEEEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHH
Confidence            4688888    446677776 455677888 999999999999998764     47899999999999999999999999


Q ss_pred             HHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhc
Q psy38            78 WMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-NDILHFETSSRSGFQVENAFTAVTQEIYNRVQ  154 (193)
Q Consensus        78 ~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~  154 (193)
                      |+..+.....  ...+|+++||||.|+.... .+.++.+++..++.. .+++|++|||++|.||+++|..+++.++....
T Consensus        92 ~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1          92 LHGQLSSLRGEGRGGLALALVGTQDRISASS-PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             HHHHHHHHCC--CCCCEEEEEEECTTCCSSS-CCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCccEEEEeeecCcchhh-hcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhh
Confidence            9999876543  4578999999999985432 467888999999765 56899999999999999999999999988765


Q ss_pred             C
Q psy38           155 S  155 (193)
Q Consensus       155 ~  155 (193)
                      +
T Consensus       171 ~  171 (175)
T d2bmja1         171 Q  171 (175)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.93  E-value=1.5e-26  Score=164.11  Aligned_cols=142  Identities=20%  Similarity=0.260  Sum_probs=113.8

Q ss_pred             eeeeeec-----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHH
Q psy38             2 VTLLYLY-----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIP   76 (193)
Q Consensus         2 ~sll~r~-----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   76 (193)
                      +||++||     .+++.||+|.++.  .+..   ..+.+.+||++|++.+...+..++.+++++++|||++++++|..+.
T Consensus        16 TsLl~~l~~~~~~~~~~~T~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~   90 (164)
T d1zd9a1          16 TTFVNVIASGQFNEDMIPTVGFNMR--KITK---GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK   90 (164)
T ss_dssp             HHHHHHHHHSCCCCSCCCCCSEEEE--EEEE---TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHH
T ss_pred             HHHHHHHHcCCCCCcccccceeeee--eeee---eeEEEEEeeccccccccccccccccccchhhcccccccccccchhh
Confidence            4677877     6788999986554  3444   3488999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            77 VWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        77 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      .|+..+.......+.|++||+||.|+.+....+.+....+..++...+++++++||++|.||+++|+||++.
T Consensus        91 ~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1          91 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             hhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            999988877666789999999999996532222222222223344456789999999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.92  E-value=2.8e-26  Score=165.36  Aligned_cols=147  Identities=18%  Similarity=0.258  Sum_probs=110.3

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...+.||.+....  .+..   ..+.+.+||++|++.++.++..++.+++++++|||++++.++.++..
T Consensus        31 TsLi~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~  105 (182)
T d1moza_          31 TTILYRLQIGEVVTTKPTIGFNVE--TLSY---KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK  105 (182)
T ss_dssp             HHHHHHTCCSEEEEECSSTTCCEE--EEEE---TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHH
T ss_pred             HHHHHHHhcCCCCccccccceEEE--EEee---CCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHH
Confidence            4677887    4456678775443  3333   34889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      |+..+.......+.|+++|+||+|+.+....+.+....+...+...++++++|||++|.||+++|++|++.+.++.
T Consensus       106 ~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         106 ELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            9888777666678999999999999653212222222222233445678999999999999999999999887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.92  E-value=8.4e-26  Score=161.58  Aligned_cols=143  Identities=21%  Similarity=0.332  Sum_probs=109.4

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +|||+||    .....||.+..+  ..  . ....+.+.+||++|++.++..+..++++++++|+|||+++.+++..+..
T Consensus        26 TSli~rl~~~~~~~~~~t~~~~~--~~--~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~  100 (173)
T d1e0sa_          26 TTILYKLKLGQSVTTIPTVGFNV--ET--V-TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ  100 (173)
T ss_dssp             HHHHHHTTCCCCEEEEEETTEEE--EE--E-EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHhcCCCCCccceeeeeE--EE--e-eccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHH
Confidence            4788888    223344444332  22  2 3355899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      |+..+.........|+++|+||.|+.+......+....+.+.+...++.+++|||++|.||+|+|+||.+++
T Consensus       101 ~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         101 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            888887765566799999999999976322222333333334444567899999999999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=1.3e-25  Score=159.19  Aligned_cols=140  Identities=18%  Similarity=0.268  Sum_probs=109.8

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    ...+.||+|...  ..+..   ..+.+.+||++|++.++..+..+++.+++++++||+++..++.++..
T Consensus        16 TsLi~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~   90 (165)
T d1ksha_          16 TTILKKFNGEDVDTISPTLGFNI--KTLEH---RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR   90 (165)
T ss_dssp             HHHHHHHTTCCCSSCCCCSSEEE--EEEEE---TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHcCCCCCcccceEeeee--eeccc---cccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHH
Confidence            4678887    566778876433  33444   44889999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH-----HHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF-----ASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      |+..........+.|+++|+||.|+.+.     ...++....     ....++.+++|||++|.||+++|+||++++..
T Consensus        91 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_          91 ELQSLLVEERLAGATLLIFANKQDLPGA-----LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHTCGGGTTCEEEEEEECTTSTTC-----CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhcccCCCceEEEEeccccccc-----cCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            7777766555567899999999999652     222222222     12235689999999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.91  E-value=2.4e-25  Score=159.37  Aligned_cols=142  Identities=25%  Similarity=0.280  Sum_probs=107.6

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    ...+.|+.|  +....+..   ..+.+.+||++|++.++..+..+++.+|++|+|||++++.++.++..
T Consensus        30 SsLi~~l~~~~~~~~~~~~~--~~~~~i~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~  104 (176)
T d1fzqa_          30 TTLLKQLASEDISHITPTQG--FNIKSVQS---QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ  104 (176)
T ss_dssp             HHHHHHHCCSCCEEEEEETT--EEEEEEEE---TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHhcCCCCcceeeee--eeEEEecc---CCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhh
Confidence            3688888    223445555  33444444   34889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      |+..+.........|+++|+||.|+........+.......++....+++++|||++|.||+++|+||++.
T Consensus       105 ~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         105 ELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             hhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            88888776666678999999999996531111111111112233355689999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.87  E-value=3e-23  Score=145.53  Aligned_cols=146  Identities=18%  Similarity=0.266  Sum_probs=112.1

Q ss_pred             eeeeeec-cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHH
Q psy38             2 VTLLYLY-IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMM   80 (193)
Q Consensus         2 ~sll~r~-~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~   80 (193)
                      +||++|| ..++.++. .......... ++..+.+.+||++|...+...+..++.++++++++||.+++.++..+..|+.
T Consensus        14 SsLi~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   91 (160)
T d1r8sa_          14 TTILYKLKLGEIVTTI-PTIGFNVETV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM   91 (160)
T ss_dssp             HHHHHHHHHHCSSCCC-CCSSCCEEEE-ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCccc-cceeeEEEEE-eeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHH
Confidence            4788888 22332222 1222223344 5677999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            81 EAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        81 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      ++.........|+++++||.|+......+.+.......+++..++++++|||++|.||+++|++|++++
T Consensus        92 ~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          92 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             HHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            888776677899999999999876322233333334445555678999999999999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.3e-19  Score=130.69  Aligned_cols=146  Identities=15%  Similarity=0.111  Sum_probs=103.5

Q ss_pred             eeeeeeccCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhh-------
Q psy38             2 VTLLYLYIQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEH-------   74 (193)
Q Consensus         2 ~sll~r~~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------   74 (193)
                      +|||+||.....||+|.  ....+   ++..+.+++||++|++.|+.++..++++++++++|||+++.++|..       
T Consensus        16 Tsl~~r~~~~~~~t~~~--~~~~~---~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~   90 (195)
T d1svsa1          16 STIVKQMKIIHEAGTGI--VETHF---TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR   90 (195)
T ss_dssp             HHHHHHHHHHHSCCCSE--EEEEE---EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBH
T ss_pred             HHHHHHHhhCCCCCccE--EEEEE---EeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHH
Confidence            58899996666788774  33333   4456899999999999999999999999999999999998876643       


Q ss_pred             ---HHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC-C-----------CCCccCHHHHH-----HHHHh------CCCcEE
Q psy38            75 ---IPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-G-----------VPREVSEAEAK-----AFASQ------NDILHF  128 (193)
Q Consensus        75 ---~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~-----------~~~~v~~~~~~-----~~~~~------~~~~~~  128 (193)
                         ...++..+.........|+++++||.|+... .           ........++.     .+...      ..++++
T Consensus        91 ~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  170 (195)
T d1svsa1          91 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH  170 (195)
T ss_dssp             HHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEE
T ss_pred             HHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeE
Confidence               3334444444444567899999999996221 0           00111122221     22211      235678


Q ss_pred             EecCCCCcCHHHHHHHHHHHHHHH
Q psy38           129 ETSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       129 ~~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +|||+++.||+++|+.+.+.++++
T Consensus       171 ~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         171 FTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeECCHhHHHHHHHHHHHHHhc
Confidence            999999999999999999888764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.5e-20  Score=134.99  Aligned_cols=146  Identities=16%  Similarity=0.117  Sum_probs=105.7

Q ss_pred             eeeeeec---cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhH-------
Q psy38             2 VTLLYLY---IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRAS-------   71 (193)
Q Consensus         2 ~sll~r~---~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------   71 (193)
                      +|||+||   ...|.||+|.++..  +.   ...+.+++||++|++.++..+..++.++++++++||.++..+       
T Consensus        16 Tsll~r~~~~~~~~~pTiG~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   90 (200)
T d2bcjq2          16 STFIKQMRIIHGSGVPTTGIIEYP--FD---LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN   90 (200)
T ss_dssp             HHHHHHHHHHTSSCCCCCSCEEEE--EE---CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTT
T ss_pred             HHHHHHHhCCCCCCCceeeEEEEE--Ee---ccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhcc
Confidence            5788998   55789999976543  33   355889999999999999999999999999999999987542       


Q ss_pred             ----HhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC-------------CCCccCHHHHHHHHH----------hCC
Q psy38            72 ----FEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG-------------VPREVSEAEAKAFAS----------QND  124 (193)
Q Consensus        72 ----~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~v~~~~~~~~~~----------~~~  124 (193)
                          ++....|...+... ...+.|+++++||.|+....             .........+..+..          ...
T Consensus        91 ~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~  169 (200)
T d2bcjq2          91 ENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI  169 (200)
T ss_dssp             SBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSC
T ss_pred             ccchHHHHHHHHHHHhhh-hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCc
Confidence                33344455554443 35678999999999984210             011122333333321          123


Q ss_pred             CcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           125 ILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       125 ~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +.+++|||++|.||.++|.++.+.|++..
T Consensus       170 ~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         170 IYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            56889999999999999999999888654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5.8e-19  Score=127.91  Aligned_cols=147  Identities=16%  Similarity=0.120  Sum_probs=102.1

Q ss_pred             eeeeeec--cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---------
Q psy38             2 VTLLYLY--IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---------   70 (193)
Q Consensus         2 ~sll~r~--~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---------   70 (193)
                      +||++||  .+.+.||+|...  ..+..   +.+.+++||++|++.++..+..+++++++++++||.++..         
T Consensus        16 Tsll~r~~f~~~~~pTiG~~~--~~~~~---~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (200)
T d1zcba2          16 STFLKQMRIIHGQDPTKGIHE--YDFEI---KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQT   90 (200)
T ss_dssp             HHHHHHHHHHHSCCCCSSEEE--EEEEE---TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEE
T ss_pred             HHHHHHHhcCCCCCCeeeeEE--EEEee---eeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccc
Confidence            4788888  788999999544  34444   4588999999999999999999999999999999998743         


Q ss_pred             -HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC-C------------CCCccCHHHHHHHHHh-----------CCC
Q psy38            71 -SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS-G------------VPREVSEAEAKAFASQ-----------NDI  125 (193)
Q Consensus        71 -s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~------------~~~~v~~~~~~~~~~~-----------~~~  125 (193)
                       .+++...|+..+.......+.|++|||||.|+.+. .            ....-..+.+.++...           ..+
T Consensus        91 ~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  170 (200)
T d1zcba2          91 NRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL  170 (200)
T ss_dssp             EHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC
T ss_pred             hhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCce
Confidence             34555667777776555668999999999997421 0            0011122333333222           235


Q ss_pred             cEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           126 LHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       126 ~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      .++++||+++.||+++|+.+.+.|+++.
T Consensus       171 y~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         171 YHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            6778999999999999999988887754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.78  E-value=8.4e-20  Score=129.99  Aligned_cols=143  Identities=18%  Similarity=0.267  Sum_probs=100.3

Q ss_pred             eeeeeec-cC---CCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY-IQ---ISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~-~~---~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++|+ ..   ...++.+  .....+..   ..+.+.+||++|.+.....+..++..++++++++|.++..++.....
T Consensus        29 SsLi~rl~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~  103 (177)
T d1zj6a1          29 TTILYQFSMNEVVHTSPTIG--SNVEEIVI---NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE  103 (177)
T ss_dssp             HHHHHHHHTTSCEEEECCSC--SSCEEEEE---TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHH
T ss_pred             HHHHHHHhcCCCCccccccc--eeEEEEee---cceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhh
Confidence            3677887 22   2233333  22233333   34889999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +.............|+++|+||.|+........+........+...++++++|||++|.||+++|+||++++
T Consensus       104 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         104 ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            777666665566889999999999966321111222222222333567899999999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.76  E-value=3.9e-19  Score=125.02  Aligned_cols=145  Identities=21%  Similarity=0.319  Sum_probs=109.8

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+++|    .....||.+.  .......   ..+.+.+||.+|...+......++..++++++++|+.+..++.....
T Consensus        19 SSLi~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (169)
T d1upta_          19 TTILYRLQVGEVVTTIPTIGF--NVETVTY---KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS   93 (169)
T ss_dssp             HHHHHHHHHSSCCCCCCCSSE--EEEEEEE---TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHH
T ss_pred             HHHHHHHhCCCCcceecccce--eeeeecc---CceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccc
Confidence            4788888    3334455543  2223333   34789999999999999999999999999999999999888888877


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ++............|+++|+||.|+........+....+..++...+++|++|||++|.||+++|++|++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_          94 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            66666655556678999999999997642222333344444556677899999999999999999999987743

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=7.1e-18  Score=117.78  Aligned_cols=136  Identities=24%  Similarity=0.250  Sum_probs=106.1

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||+||+    ...+.||++....  .  . ....+...+||+.|...+...++.++..++++++++|.++..++.....
T Consensus        14 SSLln~l~~~~~~~~~~t~~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   88 (166)
T d2qtvb1          14 TTLLHMLKNDRLATLQPTWHPTSE--E--L-AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV   88 (166)
T ss_dssp             HHHHHHHHHSCCCCCCCCCSCEEE--E--E-CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHhCCCCCeeeceeeEeEE--E--e-ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhH
Confidence            4788888    4456777764332  2  2 3345778899999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHH------------HhCCCcEEEecCCCCcCHHHHHHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFA------------SQNDILHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~------------~~~~~~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      |+..+.........|+++++||.|+...     ....+..+..            ...++.+++|||++|+||+|+|+||
T Consensus        89 ~~~~~~~~~~~~~~~i~i~~~k~d~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l  163 (166)
T d2qtvb1          89 ELDALFNIAELKDVPFVILGNKIDAPNA-----VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL  163 (166)
T ss_dssp             HHHHHHTCTTTTTCCEEEEEECTTSSSC-----CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHH
T ss_pred             HHHhhhhhhccCCceEEEEecccccccc-----CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHH
Confidence            8888887777778999999999998652     2333222221            2234579999999999999999999


Q ss_pred             HH
Q psy38           146 TQ  147 (193)
Q Consensus       146 ~~  147 (193)
                      ++
T Consensus       164 ~~  165 (166)
T d2qtvb1         164 SQ  165 (166)
T ss_dssp             TT
T ss_pred             hC
Confidence            75

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.6e-17  Score=122.64  Aligned_cols=147  Identities=15%  Similarity=0.088  Sum_probs=106.8

Q ss_pred             eeeeeec-cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCCh----------h
Q psy38             2 VTLLYLY-IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSR----------A   70 (193)
Q Consensus         2 ~sll~r~-~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~   70 (193)
                      +|||+|| ..++.||+|..  ...+.+ ++  +.+++||++|++.++..|..++++++++++++|.++.          .
T Consensus        20 Tsll~~~~~~~~~pTiG~~--~~~~~~-~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~   94 (221)
T d1azta2          20 STIVKQMRILHVVLTSGIF--ETKFQV-DK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN   94 (221)
T ss_dssp             HHHHHHHHHHHCCCCCSCE--EEEEEE-TT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSB
T ss_pred             HHHHHHHhcCCcCCCCCeE--EEEEEE-Cc--EEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchH
Confidence            4788898 66788999954  445666 44  8899999999999999999999999999999999863          3


Q ss_pred             HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCC---CC------------------------CccCHHHHHHHHHh-
Q psy38            71 SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSG---VP------------------------REVSEAEAKAFASQ-  122 (193)
Q Consensus        71 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~---~~------------------------~~v~~~~~~~~~~~-  122 (193)
                      ++.+...++..+.......+.|++|++||+|+.++-   ..                        .......+..+... 
T Consensus        95 r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~  174 (221)
T d1azta2          95 RLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE  174 (221)
T ss_dssp             HHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHH
Confidence            344555566666665556689999999999984310   00                        00012223222211 


Q ss_pred             ------------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           123 ------------NDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       123 ------------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                                  ..+..+++||.++.+|..+|..+.+.|++..
T Consensus       175 f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         175 FLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             HHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                        2245678999999999999999988888754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.65  E-value=6.1e-16  Score=109.95  Aligned_cols=138  Identities=17%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPV   77 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   77 (193)
                      +||++||    .....||.+....  .+.+ ++  ..+.+||+.++..+...+..+++..+++++++|.++...+.....
T Consensus        27 TsLl~~l~~~~~~~~~~~~~~~~~--~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~  101 (186)
T d1f6ba_          27 TTLLHMLKDDRLGQHVPTLHPTSE--ELTI-AG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE  101 (186)
T ss_dssp             HHHHHHHSCC------CCCCCSCE--EEEE-TT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHH
T ss_pred             HHHHHHHhCCCCcceeccccccee--EEEe-cc--cccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHH
Confidence            4788888    2233566554333  4455 44  567899999999999999999999999999999999998888877


Q ss_pred             HHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-----------------CCCcEEEecCCCCcCHHH
Q psy38            78 WMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-----------------NDILHFETSSRSGFQVEN  140 (193)
Q Consensus        78 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~e  140 (193)
                      ++..........+.|+++++||.|+...     +......+....                 .++++++|||++|+||+|
T Consensus       102 ~~~~~~~~~~~~~~~~li~~~K~D~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e  176 (186)
T d1f6ba_         102 ELDSLMTDETIANVPILILGNKIDRPEA-----ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE  176 (186)
T ss_dssp             HHHHHHTCGGGTTSCEEEEEECTTSTTC-----CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred             HHHHhhcccccCCCceEEEEeccCcccc-----CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHH
Confidence            6666665444567899999999998652     333333333321                 234699999999999999


Q ss_pred             HHHHHHHHH
Q psy38           141 AFTAVTQEI  149 (193)
Q Consensus       141 ~f~~i~~~i  149 (193)
                      +|+||++++
T Consensus       177 ~~~~l~~~i  185 (186)
T d1f6ba_         177 GFRWMAQYI  185 (186)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhh
Confidence            999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=8.3e-16  Score=109.37  Aligned_cols=134  Identities=17%  Similarity=0.091  Sum_probs=86.2

Q ss_pred             eeeeecc-------CCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccch--------hhhccCccEEEEEEeCC
Q psy38             3 TLLYLYI-------QISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSIT--------KSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~~-------~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~~~~~d~~i~v~d~~   67 (193)
                      ||+|++.       ..+..|. .+........ .+  ..+.+|||+|........        ..+++++|++++|+|++
T Consensus        20 SLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~-~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~   95 (178)
T d1wf3a1          20 TLLNNLLGVKVAPISPRPQTT-RKRLRGILTE-GR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLR   95 (178)
T ss_dssp             HHHHHHHTSCCSCCCSSSCCC-CSCEEEEEEE-TT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETT
T ss_pred             HHHHHHhCCCceeecccCCcc-cccccceeee-ee--eeeeecccccccccccccchhcccccccccccccceeeeechh
Confidence            6777771       2223233 3444444444 44  678899999975533322        34577899999999998


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      ++..  ....|+....... ..+.|+++|+||+|+...      ..+....+....+ ..++++||++|.||++++++|+
T Consensus        96 ~~~~--~~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~  166 (178)
T d1wf3a1          96 HPPT--PEDELVARALKPL-VGKVPILLVGNKLDAAKY------PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL  166 (178)
T ss_dssp             SCCC--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSS------HHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhhc--ccccchhhheecc-ccchhhhhhhcccccccC------HHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHH
Confidence            7543  2333333333332 235789999999998551      2233344455555 4788999999999999999998


Q ss_pred             HHH
Q psy38           147 QEI  149 (193)
Q Consensus       147 ~~i  149 (193)
                      +.+
T Consensus       167 ~~l  169 (178)
T d1wf3a1         167 ALM  169 (178)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=5.2e-14  Score=99.99  Aligned_cols=113  Identities=13%  Similarity=0.053  Sum_probs=75.5

Q ss_pred             cEEEEEEeeCCCcccc----ccc---hhhhccCccEEEEEEeCCCh--hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            31 ARIKLQLWDTAGQERF----RSI---TKSYYRNSVGALLVYDITSR--ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~----~~~---~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ....+.+|||+|....    ..+   .-..+..++++++++|....  .++.....|+......  ....|+++|+||+|
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~D  124 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPA--LLRRPSLVALNKVD  124 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHH--HHHSCEEEEEECCT
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccc--cchhhhhhhhhhhh
Confidence            3456789999995321    111   22456789999999998653  2333334444332221  12368999999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      +..+     -..+...+.....+.+++.+||++|.||+++++.|.+.+.
T Consensus       125 ~~~~-----~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         125 LLEE-----EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             TSCH-----HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhH-----HHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            9652     1223344555667889999999999999999998877664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.1e-14  Score=104.34  Aligned_cols=102  Identities=12%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             eeeeeec----cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc-cchhhhccCccEEEEEEeCCChhH-HhhH
Q psy38             2 VTLLYLY----IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR-SITKSYYRNSVGALLVYDITSRAS-FEHI   75 (193)
Q Consensus         2 ~sll~r~----~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s-~~~~   75 (193)
                      +||+++|    .....||++.++...  .+.++..+.+.+||++|++.++ ..+..++..++++++|+|+++..+ +.+.
T Consensus        14 TsLl~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~   91 (207)
T d2fh5b1          14 TLLFVRLLTGQYRDTQTSITDSSAIY--KVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV   91 (207)
T ss_dssp             HHHHHHHHHSCCCCBCCCCSCEEEEE--ECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcccCCeeEEEEEE--EEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHH
Confidence            4678888    334457777655543  4436667889999999998875 467888999999999999999765 4555


Q ss_pred             HHHHHHHHHhc--CCCCCeEEEEeeCCCCCCC
Q psy38            76 PVWMMEAKRHI--EPHRPVFALVGCKLDLLQS  105 (193)
Q Consensus        76 ~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~  105 (193)
                      ..|+..+....  ....+|+++|+||+|+...
T Consensus        92 ~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          92 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            55555554322  2456899999999999763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.4e-15  Score=102.42  Aligned_cols=131  Identities=20%  Similarity=0.220  Sum_probs=90.5

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc--------hhhhccCccEEEEEEeCCC
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI--------TKSYYRNSVGALLVYDITS   68 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~   68 (193)
                      ||+|++      ...+.|+...+.....+.. .+  ..+.+||++|.......        ...++..+|++++++|..+
T Consensus        16 sLin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~   92 (161)
T d2gj8a1          16 SLLNALAGREAAIVTDIAGTTRDVLREHIHI-DG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTT   92 (161)
T ss_dssp             HHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTT
T ss_pred             HHHHHHhCCCceEeecccccccceEeeeeec-cC--ceeeeccccccccccccchhHHHHHHHHHHHhccccceeecccc
Confidence            577777      1223343334444455555 44  67889999996543321        2456789999999999998


Q ss_pred             hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHH
Q psy38            69 RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus        69 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ..++.....|...+...  ....|+++|+||+|+..+   ..       .+....+.+++++||++|.||++++++|.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~---~~-------~~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1          93 TDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGE---TL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCC---CC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhc--ccccceeeccchhhhhhh---HH-------HHHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            87777776665555543  345889999999998552   11       1122345789999999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=2.5e-14  Score=100.86  Aligned_cols=113  Identities=15%  Similarity=0.097  Sum_probs=76.2

Q ss_pred             cEEEEEEeeCCCccc---------cccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCC
Q psy38            31 ARIKLQLWDTAGQER---------FRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLD  101 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  101 (193)
                      ....+.+||++|...         +......++..+|+++++.+.+....... ..|+..+...    +.|+++|+||+|
T Consensus        46 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~----~~pviiv~NK~D  120 (171)
T d1mkya1          46 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS----TVDTILVANKAE  120 (171)
T ss_dssp             TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH----TCCEEEEEESCC
T ss_pred             cccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc----cccccccchhhh
Confidence            447789999998422         11223445778999999999876443322 3444445443    368899999999


Q ss_pred             CCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHHHHHHHHh
Q psy38           102 LLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVTQEIYNRV  153 (193)
Q Consensus       102 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~  153 (193)
                      +..     ....+...++.+.....++++||++|.||++++++|.+.+-++.
T Consensus       121 l~~-----~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         121 NLR-----EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             SHH-----HHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             hhh-----hhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            843     12223333444444457899999999999999999998775543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=8.2e-13  Score=91.68  Aligned_cols=131  Identities=23%  Similarity=0.226  Sum_probs=81.4

Q ss_pred             eeeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc---------cchhhhccCccEEEEEEeC
Q psy38             2 VTLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR---------SITKSYYRNSVGALLVYDI   66 (193)
Q Consensus         2 ~sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~~~~~~~~~~d~~i~v~d~   66 (193)
                      .||+|++      .....|..........+.. ++  ..+.+|||+|.....         ......+..+|++++++|+
T Consensus        14 SSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~   90 (160)
T d1xzpa2          14 STLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDA   90 (160)
T ss_dssp             CHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEET
T ss_pred             HHHHHHHhCCCceeeeccccccccceeEEEEe-CC--eeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence            3677777      1122222223344445555 54  678899999942210         1112236789999999999


Q ss_pred             CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHHHHHHH
Q psy38            67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      +++.......-+     ...  ...++++++||.|+.+.     ...++... ....+.+++.+||++|.||++++++|.
T Consensus        91 ~~~~~~~~~~~~-----~~~--~~~~~i~~~~k~d~~~~-----~~~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~~~I~  157 (160)
T d1xzpa2          91 SSPLDEEDRKIL-----ERI--KNKRYLVVINKVDVVEK-----INEEEIKN-KLGTDRHMVKISALKGEGLEKLEESIY  157 (160)
T ss_dssp             TSCCCHHHHHHH-----HHH--TTSSEEEEEEECSSCCC-----CCHHHHHH-HHTCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred             CCCcchhhhhhh-----hhc--ccccceeeeeeccccch-----hhhHHHHH-HhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            987654433221     111  23578899999999662     23333322 222457899999999999999999987


Q ss_pred             HH
Q psy38           147 QE  148 (193)
Q Consensus       147 ~~  148 (193)
                      ++
T Consensus       158 ke  159 (160)
T d1xzpa2         158 RE  159 (160)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.34  E-value=2.5e-13  Score=96.45  Aligned_cols=111  Identities=17%  Similarity=0.147  Sum_probs=77.6

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      ...+.++|++|+..|.......+..+|++++++|+++....+... .+..+...    +.|+++|.||+|+...   ...
T Consensus        58 ~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~~----~~p~iiv~NKiD~~~~---~~~  129 (179)
T d1wb1a4          58 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGE-HMLILDHF----NIPIIVVITKSDNAGT---EEI  129 (179)
T ss_dssp             TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHH-HHHHHHHT----TCCBCEEEECTTSSCH---HHH
T ss_pred             Cccccccccccccccccchhhhhhhccccccccccccccchhhhh-hhhhhhhc----CCcceeccccccccCH---HHH
Confidence            367889999999999888888999999999999998753332222 22223322    4688899999998652   111


Q ss_pred             --CHHHHHHHHHh----CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           112 --SEAEAKAFASQ----NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       112 --~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                        ..+....+...    .+.+++.+||++|.|++++++.|++.+-
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         130 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  174 (179)
T ss_dssp             HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence              11112222222    2358999999999999999999987654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=2.1e-12  Score=91.77  Aligned_cols=137  Identities=15%  Similarity=0.117  Sum_probs=79.4

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccc----cchhh---hccCccEEEEEEeCCCh
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFR----SITKS---YYRNSVGALLVYDITSR   69 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~----~~~~~---~~~~~d~~i~v~d~~~~   69 (193)
                      ||+|++      ...+.++. .+.......+.+++  .+.+|||||..+..    .+...   .+..++.++++.+....
T Consensus        16 SLin~L~~~~~~~~~~~~~T-~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~   92 (185)
T d1lnza2          16 TLLSVVSSAKPKIADYHFTT-LVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGL   92 (185)
T ss_dssp             HHHHHSEEECCEESSTTSSC-CCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCS
T ss_pred             HHHHHHhCCCCceecCCCce-EeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeeccc
Confidence            567776      22333332 22333334443554  46799999963321    12222   24568888888877654


Q ss_pred             hHHhhHHH--HHHHHHHhcC--CCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh--CCCcEEEecCCCCcCHHHHHH
Q psy38            70 ASFEHIPV--WMMEAKRHIE--PHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQ--NDILHFETSSRSGFQVENAFT  143 (193)
Q Consensus        70 ~s~~~~~~--~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~e~f~  143 (193)
                      ........  +.........  ....|+++|+||+|+.+.       .+....+...  .+.+++.+||++|.||++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-------~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~  165 (185)
T d1lnza2          93 EGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-------AENLEAFKEKLTDDYPVFPISAVTREGLRELLF  165 (185)
T ss_dssp             SCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-------HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHH
T ss_pred             ccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-------HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHH
Confidence            33222211  1222222211  235788899999998651       2223334433  357899999999999999999


Q ss_pred             HHHHHH
Q psy38           144 AVTQEI  149 (193)
Q Consensus       144 ~i~~~i  149 (193)
                      +|.+.+
T Consensus       166 ~i~~~L  171 (185)
T d1lnza2         166 EVANQL  171 (185)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=1.1e-11  Score=87.74  Aligned_cols=107  Identities=16%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             EEEeeCCCccc---------------cccchhhhccCccEEEEEEeCCChhHHhh---------H-HHHHHHHHHhcCCC
Q psy38            35 LQLWDTAGQER---------------FRSITKSYYRNSVGALLVYDITSRASFEH---------I-PVWMMEAKRHIEPH   89 (193)
Q Consensus        35 l~l~D~~g~~~---------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~---------~-~~~~~~i~~~~~~~   89 (193)
                      +.+|||||...               +.......++.+|++++|+|.+.......         . ..+++.+..    .
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~  120 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----L  120 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----T
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----c
Confidence            57899999521               11112345678999999999875432111         1 112232332    2


Q ss_pred             CCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC-------CCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            90 RPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN-------DILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        90 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..|+++|+||+|+.++   .   ......+....       ...++.+||++|.||++++++|.+.+-+
T Consensus       121 ~~p~iiv~NK~D~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKN---V---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCEEEEEECGGGCSC---H---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeeehhhh---H---HHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            4789999999997541   1   11111222221       1248899999999999999999887654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.26  E-value=1.1e-11  Score=91.04  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=76.9

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE  110 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  110 (193)
                      ....+.|+||||+..|.......+..+|++|+|+|+.+.-.-+. ...+..+...    +.|+++|.||+|+........
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~----~~p~iivlNK~D~~~~~~~~~  142 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY----RTPFVVAANKIDRIHGWRVHE  142 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT----TCCEEEEEECGGGSTTCCCCT
T ss_pred             cccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhcC----CCeEEEEEECccCCCchhhhh
Confidence            34578899999999998888888899999999999986432222 2233333332    468899999999865321111


Q ss_pred             cC--------------H---HHH----HHHHHh--------------CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38           111 VS--------------E---AEA----KAFASQ--------------NDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus       111 v~--------------~---~~~----~~~~~~--------------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      ..              .   ...    ..+...              ..++++.+||.+|.|++++++.+...+-+
T Consensus       143 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00              0   000    011111              11468899999999999999988876544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=6.5e-11  Score=83.86  Aligned_cols=117  Identities=21%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             EEEEecCCcEEEEEEeeCCCcccccc------------chhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCC
Q psy38            23 RLVTMRDGARIKLQLWDTAGQERFRS------------ITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHR   90 (193)
Q Consensus        23 ~~~~~~~~~~~~l~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~   90 (193)
                      ..+.+ ++  ..+.++|++|......            .....++.+|++++++|++....- ....++..+...    .
T Consensus        49 ~~~~~-~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~----~  120 (186)
T d1mkya2          49 DEVFI-DG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR----G  120 (186)
T ss_dssp             EEEEE-TT--EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT----T
T ss_pred             eeecc-CC--ceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc----C
Confidence            34455 55  4577889988643222            233456789999999999764221 123333333332    4


Q ss_pred             CeEEEEeeCCCCCCCCCCCccCHHHHHHHHHh-----CCCcEEEecCCCCcCHHHHHHHHHHHHHH
Q psy38            91 PVFALVGCKLDLLQSGVPREVSEAEAKAFASQ-----NDILHFETSSRSGFQVENAFTAVTQEIYN  151 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~  151 (193)
                      .|+|+|+||+|+...   ......+..+....     ...+++.+||++|.|+++++++|-+ +++
T Consensus       121 ~~~i~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~-~~~  182 (186)
T d1mkya2         121 RASVVVFNKWDLVVH---REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL-AYA  182 (186)
T ss_dssp             CEEEEEEECGGGSTT---GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHH-HHH
T ss_pred             Cceeeeccchhhhcc---hhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHH-HHH
Confidence            789999999998652   22233333322222     2358999999999999999999955 444

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.16  E-value=8.7e-11  Score=84.85  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      ..+.+.|++|+..|.......+..+|++|+|.|+.+.-.-...+..+..+...   ...|+|++.||.|+.+... ....
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~-~~~~  161 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEE-ALSQ  161 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHH-HHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchH-HHHH
Confidence            46889999999999887777888999999999998742111222222222222   2358888999999965210 0011


Q ss_pred             HHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           113 EAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       113 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ......+....   +++++.+||++|.||+++++.|...
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            12222333332   3689999999999999999987764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.16  E-value=1.1e-10  Score=83.51  Aligned_cols=113  Identities=13%  Similarity=0.113  Sum_probs=77.0

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV  111 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v  111 (193)
                      ...+.++||+|+..|.......+..+|+++++.|+.+..........+..+...   ..++++++.||.|+.+... ...
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~-~~~  152 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEK-ALE  152 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHH-HHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHH-HHH
Confidence            356899999999999888878888999999999998743222233333333332   2356778999999865200 011


Q ss_pred             CHHHHHHHHHhC---CCcEEEecCCCCcCHHHHHHHHHHH
Q psy38           112 SEAEAKAFASQN---DILHFETSSRSGFQVENAFTAVTQE  148 (193)
Q Consensus       112 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~e~f~~i~~~  148 (193)
                      ......++....   .++++.+||++|.|++++++.+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         153 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            123333444443   3689999999999999999888764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.09  E-value=6.6e-11  Score=84.94  Aligned_cols=119  Identities=16%  Similarity=0.070  Sum_probs=78.5

Q ss_pred             EEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCC
Q psy38            21 FARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKL  100 (193)
Q Consensus        21 ~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  100 (193)
                      ....+.+ +.....+.+.||+|+..|.......+..+|++++|+|+.+...- ...+.+..+...   ...|+|++.||.
T Consensus        55 ~~~~~~~-~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~---~~~~iIv~iNK~  129 (196)
T d1d2ea3          55 NAAHVEY-STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI---GVEHVVVYVNKA  129 (196)
T ss_dssp             ECEEEEE-ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCCEEEEEECG
T ss_pred             CcceEEE-EeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh---cCCcEEEEEecc
Confidence            3333344 33446788999999999988777888999999999999874321 223333333332   236788899999


Q ss_pred             CCCCCCCCCcc---CHHHHHHHHHhCC-----CcEEEecCCCC----------cCHHHHHHHHHH
Q psy38           101 DLLQSGVPREV---SEAEAKAFASQND-----ILHFETSSRSG----------FQVENAFTAVTQ  147 (193)
Q Consensus       101 Dl~~~~~~~~v---~~~~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~e~f~~i~~  147 (193)
                      |+..+   ...   -..+...+....+     ++++.+||++|          .++.++++++.+
T Consensus       130 D~~~~---~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         130 DAVQD---SEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             GGCSC---HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             ccccc---HHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            98642   111   1123344444433     57999999988          488888877654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.01  E-value=5e-10  Score=79.85  Aligned_cols=89  Identities=13%  Similarity=0.022  Sum_probs=58.4

Q ss_pred             hhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHH----HHhCCCcE
Q psy38            52 SYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAF----ASQNDILH  127 (193)
Q Consensus        52 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~----~~~~~~~~  127 (193)
                      ..+..++++++++|++.+..- ....+++.+...    ..|+++|+||+|+...   ... .+....+    ......++
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~----~~piivv~NK~D~~~~---~~~-~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY----GIPVIVIATKADKIPK---GKW-DKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT----TCCEEEEEECGGGSCG---GGH-HHHHHHHHHHHTCCTTSEE
T ss_pred             ccccchhhhhhhhhccccccc-cccccccccccc----cCcceechhhccccCH---HHH-HHHHHHHHHHhcccCCCCE
Confidence            345568999999998764321 113344444443    4689999999998541   221 1222222    22244689


Q ss_pred             EEecCCCCcCHHHHHHHHHHHH
Q psy38           128 FETSSRSGFQVENAFTAVTQEI  149 (193)
Q Consensus       128 ~~~Sa~~~~~i~e~f~~i~~~i  149 (193)
                      +.+||++|.|++++|.+|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=6.7e-11  Score=85.14  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=71.2

Q ss_pred             eeeeeec-cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccchhhh----ccCccEEEEEEeCCC-hhHHhhH
Q psy38             2 VTLLYLY-IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSY----YRNSVGALLVYDITS-RASFEHI   75 (193)
Q Consensus         2 ~sll~r~-~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~----~~~~d~~i~v~d~~~-~~s~~~~   75 (193)
                      +||+|+| ..++.||++.+.....+.. +  ...+.+||++|++.+...+..+    ...++.+++++|+.+ ..++.++
T Consensus        17 TSLln~l~~~~~~~~tt~~~~~~~~~~-~--~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~   93 (209)
T d1nrjb_          17 TSLLTLLTTDSVRPTVVSQEPLSAADY-D--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT   93 (209)
T ss_dssp             HHHHHHHHHSSCCCBCCCSSCEEETTG-G--GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH
T ss_pred             HHHHHHHhCCCCCCeEEecceEEEEEe-C--CeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHH
Confidence            4788998 6667777766666655554 4  4567899999998876655444    345688888888764 5667777


Q ss_pred             HHHHHHHH---HhcCCCCCeEEEEeeCCCCCC
Q psy38            76 PVWMMEAK---RHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        76 ~~~~~~i~---~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..|+.++.   ......+.|+++|+||+|+..
T Consensus        94 ~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          94 AEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             HHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            77765443   233456789999999999966

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.9e-09  Score=75.47  Aligned_cols=135  Identities=16%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             eeeeec------cCCCCCcceeeEEEEEEEecCCcEEEEEEeeCCCcccc---------ccchhhhccCccEEEEEEeCC
Q psy38             3 TLLYLY------IQISDPTVGVDFFARLVTMRDGARIKLQLWDTAGQERF---------RSITKSYYRNSVGALLVYDIT   67 (193)
Q Consensus         3 sll~r~------~~~~~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~~~~~~~~~~~d~~i~v~d~~   67 (193)
                      ||+|++      ...+.++............ +.  ..+.+||++|....         ..........+++++++.|..
T Consensus        20 SLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~   96 (179)
T d1egaa1          20 TLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGT   96 (179)
T ss_dssp             HHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETT
T ss_pred             HHHHHHhCCCceeeccCCCceEEEEEeeeec-CC--ceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecC
Confidence            677777      1223333322333333333 33  45567888775321         112233445678888888877


Q ss_pred             ChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCC-CcEEEecCCCCcCHHHHHHHHH
Q psy38            68 SRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQND-ILHFETSSRSGFQVENAFTAVT  146 (193)
Q Consensus        68 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~e~f~~i~  146 (193)
                      +...  ....+...+..    ...|+++|.||.|+..+   +.........+....+ .+++.+||++|.|+++++++|.
T Consensus        97 ~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~  167 (179)
T d1egaa1          97 RWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQE---KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  167 (179)
T ss_dssp             CCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCC---HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             ccch--hHHHHHHHhhh----ccCceeeeeeeeeccch---hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHH
Confidence            5322  12223333332    23567799999998652   2222344445555565 4899999999999999999987


Q ss_pred             HHH
Q psy38           147 QEI  149 (193)
Q Consensus       147 ~~i  149 (193)
                      +.+
T Consensus       168 ~~l  170 (179)
T d1egaa1         168 KHL  170 (179)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            743

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=1.4e-09  Score=78.40  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=67.6

Q ss_pred             eEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            19 DFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      +.....+.. ++  ..+.|.||||+..|.......+..+|++|+|+|+++....+....| ..+....   -++++++.|
T Consensus        56 ~~~~~~~~~-~~--~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~g---i~~iiv~iN  128 (204)
T d2c78a3          56 NTAHVEYET-AK--RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQVG---VPYIVVFMN  128 (204)
T ss_dssp             SCEEEEEEC-SS--CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHTT---CCCEEEEEE
T ss_pred             EeeEEEEEe-CC--eEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHcC---CCeEEEEEE
Confidence            344445555 55  5678999999999988888889999999999999876444443333 3333321   245778899


Q ss_pred             CCCCCCCCCCCcc---CHHHHHHHHHhCC-----CcEEEecCCC
Q psy38            99 KLDLLQSGVPREV---SEAEAKAFASQND-----ILHFETSSRS  134 (193)
Q Consensus        99 K~Dl~~~~~~~~v---~~~~~~~~~~~~~-----~~~~~~Sa~~  134 (193)
                      |.|+.++   ...   -.++...+....+     ++++..|+..
T Consensus       129 K~D~~~~---~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         129 KVDMVDD---PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             CGGGCCC---HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             ecccCCC---HHHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            9998541   111   1223334444332     5678888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.79  E-value=3e-08  Score=72.11  Aligned_cols=104  Identities=15%  Similarity=0.032  Sum_probs=68.3

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCc-
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPRE-  110 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-  110 (193)
                      ..++.+.|+||+..|..........+|++|+|.|+.+...-+....|  .+....  .-..+|++.||.|+.+...... 
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~--~~~~~~--gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS--YIASLL--GIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH--HHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH--HHHHHc--CCCEEEEEEEccccccccceehh
Confidence            36788999999999988888888999999999999874222222222  222222  2245789999999976211000 


Q ss_pred             cCHHHHHHHHHhCC-----CcEEEecCCCCcCHH
Q psy38           111 VSEAEAKAFASQND-----ILHFETSSRSGFQVE  139 (193)
Q Consensus       111 v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  139 (193)
                      ....+...+....+     ++++.+||.+|.||.
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            01123344555543     367899999999984

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.65  E-value=4.2e-08  Score=71.36  Aligned_cols=107  Identities=13%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             cEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HH---hhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            31 ARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SF---EHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        31 ~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ....+.|.||||+..|.........-+|++|+|+|+.+..   ++   ....+.+.-...   ....++|++.||.|+..
T Consensus        79 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~~~iIv~iNK~D~~~  155 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTE  155 (224)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSS
T ss_pred             CCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCCCceEEEEEcccCCC
Confidence            4477899999999999998888899999999999998742   11   112222221221   22356778999999864


Q ss_pred             CCCCCc---cCHHHHHHHHHhCC-----CcEEEecCCCCcCHHH
Q psy38           105 SGVPRE---VSEAEAKAFASQND-----ILHFETSSRSGFQVEN  140 (193)
Q Consensus       105 ~~~~~~---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e  140 (193)
                      ......   .-..+...+....+     ++++.+||..|.||.+
T Consensus       156 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         156 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            211110   01122333444332     4688999999999853

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=3.6e-07  Score=68.21  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=57.7

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      .....+.+ ++  ..+.|.||||+.+|.......+.-+|++|+|+|+.+.-.-+...-| .....+    +.|.+++.||
T Consensus        61 ~~~~~~~~-~~--~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~----~lP~i~fINK  132 (276)
T d2bv3a2          61 AAVTTCFW-KD--HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY----KVPRIAFANK  132 (276)
T ss_dssp             CSEEEEEE-TT--EEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT----TCCEEEEEEC
T ss_pred             cceeeecc-CC--eEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc----CCCEEEEEec
Confidence            33445555 44  6789999999999998888899999999999999885433333334 333333    5889999999


Q ss_pred             CCCCC
Q psy38           100 LDLLQ  104 (193)
Q Consensus       100 ~Dl~~  104 (193)
                      .|...
T Consensus       133 mDr~~  137 (276)
T d2bv3a2         133 MDKTG  137 (276)
T ss_dssp             TTSTT
T ss_pred             ccccc
Confidence            99866

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=2.3e-08  Score=73.80  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=59.3

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HHh---hHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCC
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SFE---HIPVWMMEAKRHIEPHRPVFALVGCKLDLLQS  105 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  105 (193)
                      ...+.+.|+||+..|..........+|++++|.|+.+..   ++.   .....+.-+..   .....++++.||.|+...
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTC
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCcc
Confidence            367899999999999988888889999999999998631   111   22232222222   223457799999998642


Q ss_pred             CCCCccCH---HHHHHHHHhC-------CCcEEEecCCCCcCHHHHHH
Q psy38           106 GVPREVSE---AEAKAFASQN-------DILHFETSSRSGFQVENAFT  143 (193)
Q Consensus       106 ~~~~~v~~---~~~~~~~~~~-------~~~~~~~Sa~~~~~i~e~f~  143 (193)
                      ........   ++...+..+.       .++++.+||++|.||.++++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            11111111   1112222221       25789999999999977544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=9.3e-08  Score=70.18  Aligned_cols=116  Identities=12%  Similarity=0.030  Sum_probs=74.1

Q ss_pred             eeEEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChh---HH----hhHHHHHHHHHHhcCCCC
Q psy38            18 VDFFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRA---SF----EHIPVWMMEAKRHIEPHR   90 (193)
Q Consensus        18 ~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~   90 (193)
                      ++.....+.. ++  .++.|.||||+..|..........+|++|+|.|+....   .+    +....| .....   ..-
T Consensus        72 i~~~~~~~~~-~~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~---~gv  144 (239)
T d1f60a3          72 IDIALWKFET-PK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT---LGV  144 (239)
T ss_dssp             CSCSCEEEEC-SS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH---TTC
T ss_pred             cccceeEecc-CC--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHH---cCC
Confidence            3444555555 43  78999999999999988888899999999999997631   11    122223 22222   223


Q ss_pred             CeEEEEeeCCCCCCCCCCCc-cCHHHHHHHHHhCC-----CcEEEecCCCCcCHHH
Q psy38            91 PVFALVGCKLDLLQSGVPRE-VSEAEAKAFASQND-----ILHFETSSRSGFQVEN  140 (193)
Q Consensus        91 ~piilv~nK~Dl~~~~~~~~-v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~e  140 (193)
                      .++|++.||.|+.+....+. ....+...+....+     ++++.+|+..|.|+-+
T Consensus       145 ~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         145 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            56888999999865211000 01123334444433     5789999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.52  E-value=3.2e-07  Score=68.21  Aligned_cols=76  Identities=18%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             EEEEEEEecCCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            20 FFARLVTMRDGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        20 ~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      .....+.+ ++  .++.++||||+.+|.......+.-+|++|+|+|+.+.-.-+....| ..+.++    ..|.+++.||
T Consensus        57 ~~~~~~~~-~~--~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~----~~p~~i~iNk  128 (267)
T d2dy1a2          57 TGVAPLLF-RG--HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL----GLPRMVVVTK  128 (267)
T ss_dssp             CEEEEEEE-TT--EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT----TCCEEEEEEC
T ss_pred             eecccccc-cc--cceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc----cccccccccc
Confidence            33345555 55  6788999999999988888899999999999999875444443344 333333    3788899999


Q ss_pred             CCCC
Q psy38           100 LDLL  103 (193)
Q Consensus       100 ~Dl~  103 (193)
                      .|..
T Consensus       129 ~D~~  132 (267)
T d2dy1a2         129 LDKG  132 (267)
T ss_dssp             GGGC
T ss_pred             cccc
Confidence            9974

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.1e-06  Score=63.43  Aligned_cols=87  Identities=18%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             hhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHH--hCCCc
Q psy38            50 TKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFAS--QNDIL  126 (193)
Q Consensus        50 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~--~~~~~  126 (193)
                      .+-.+.+.|.+++|+++.+|+ +..-+.+|+......    +++.+||.||+||.++   .  ..+....+..  ..+.+
T Consensus         4 ~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~----~i~pvIvlnK~DL~~~---~--~~~~~~~~~~~~~~~~~   74 (225)
T d1u0la2           4 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN----ELETVMVINKMDLYDE---D--DLRKVRELEEIYSGLYP   74 (225)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT----TCEEEEEECCGGGCCH---H--HHHHHHHHHHHHTTTSC
T ss_pred             CCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc----CCCEEEEEeCcccCCH---H--HHHHHHHhhccccccee
Confidence            344568899999999988754 566677777766654    3666799999999541   1  1122222222  24568


Q ss_pred             EEEecCCCCcCHHHHHHHH
Q psy38           127 HFETSSRSGFQVENAFTAV  145 (193)
Q Consensus       127 ~~~~Sa~~~~~i~e~f~~i  145 (193)
                      ++.+|++++.|++++...+
T Consensus        75 v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          75 IVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             EEECCTTTCTTHHHHHHHH
T ss_pred             EEEeccccchhHhhHHHHh
Confidence            9999999999999988766

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=1.3e-06  Score=66.99  Aligned_cols=70  Identities=26%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             CCcEEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            29 DGARIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        29 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      +++.+.+.++||||+.+|.......++-+|++|+|+|+.+.-..+....|......     ..|+++|.||.|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~-----~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence            44678899999999999998888888999999999999886555544444443332     36888999999974

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=3.1e-06  Score=58.59  Aligned_cols=87  Identities=15%  Similarity=0.009  Sum_probs=49.2

Q ss_pred             CccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhC--CCcEEEecCC
Q psy38            56 NSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQN--DILHFETSSR  133 (193)
Q Consensus        56 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~  133 (193)
                      ..+.++.+.+..... ......++..+...    ..++++++||.|+....... ...+...+.....  ..+++.+||+
T Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~v~~k~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~i~vSA~  171 (188)
T d1puia_          98 SLQGLVVLMDIRHPL-KDLDQQMIEWAVDS----NIAVLVLLTKADKLASGARK-AQLNMVREAVLAFNGDVQVETFSSL  171 (188)
T ss_dssp             TEEEEEEEEETTSCC-CHHHHHHHHHHHHT----TCCEEEEEECGGGSCHHHHH-HHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             heeEEEEeecccccc-hhHHHHHHHHhhhc----cccccchhhhhhccCHHHHH-HHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            344555555554432 22223444444443    35777999999985520000 0111122222222  2478999999


Q ss_pred             CCcCHHHHHHHHHHH
Q psy38           134 SGFQVENAFTAVTQE  148 (193)
Q Consensus       134 ~~~~i~e~f~~i~~~  148 (193)
                      +|.||+++++.|.+-
T Consensus       172 ~g~Gid~L~~~i~~~  186 (188)
T d1puia_         172 KKQGVDKLRQKLDTW  186 (188)
T ss_dssp             TTBSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999988653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.7e-05  Score=58.83  Aligned_cols=91  Identities=10%  Similarity=-0.001  Sum_probs=63.5

Q ss_pred             hhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEE
Q psy38            50 TKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFE  129 (193)
Q Consensus        50 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (193)
                      ....++.+|++++|.|+-+|.+..+-  .++.+..     +.|+|+|.||+||..    .. ..+.-.++....+..++.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~~-----~Kp~IlVlNK~DLv~----~~-~~~~w~~~f~~~~~~~i~   76 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP--MIEDILK-----NKPRIMLLNKADKAD----AA-VTQQWKEHFENQGIRSLS   76 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHCS-----SSCEEEEEECGGGSC----HH-HHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHHc-----CCCeEEEEECccCCc----hH-HHHHHHHHHHhcCCccce
Confidence            45578899999999999887654432  2223322     468889999999954    11 222233444556788999


Q ss_pred             ecCCCCcCHHHHHHHHHHHHHHH
Q psy38           130 TSSRSGFQVENAFTAVTQEIYNR  152 (193)
Q Consensus       130 ~Sa~~~~~i~e~f~~i~~~i~~~  152 (193)
                      +|+.++.++.++...+.+.+.+.
T Consensus        77 isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          77 INSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             eecccCCCccccchhhhhhhhhh
Confidence            99999999998888777665554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.9e-06  Score=62.35  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             hhhhccCccEEEEEEeCCChh-HHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHH---HHHHHHhCCC
Q psy38            50 TKSYYRNSVGALLVYDITSRA-SFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAE---AKAFASQNDI  125 (193)
Q Consensus        50 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~---~~~~~~~~~~  125 (193)
                      .+....+.|.+++|+++.+|+ ++..+.+++......    +.+.+||.||+||..+    ....+.   ..+.....|+
T Consensus         4 ~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~----~i~pvIvlnK~DL~~~----~~~~~~~~~~~~~y~~~g~   75 (231)
T d1t9ha2           4 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN----DIQPIICITKMDLIED----QDTEDTIQAYAEDYRNIGY   75 (231)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT----TCEEEEEEECGGGCCC----HHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc----CCCEEEEEeccccccc----HHHHHHHHHHHHHHhhccc
Confidence            344567999999999988764 666677776665543    3566699999999652    111222   2233455789


Q ss_pred             cEEEecCCCCcCHHHHHHHH
Q psy38           126 LHFETSSRSGFQVENAFTAV  145 (193)
Q Consensus       126 ~~~~~Sa~~~~~i~e~f~~i  145 (193)
                      +++.+|+.++.|++++...+
T Consensus        76 ~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          76 DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CEEECCHHHHTTCTTTGGGG
T ss_pred             cceeeecCChhHHHHHHHhh
Confidence            99999999999998887655

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.90  E-value=1.4e-05  Score=57.62  Aligned_cols=115  Identities=13%  Similarity=0.017  Sum_probs=65.8

Q ss_pred             EEEEEeeCCCccccccchhh---h--ccCccEEEEEEeCCC---hhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC
Q psy38            33 IKLQLWDTAGQERFRSITKS---Y--YRNSVGALLVYDITS---RASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ  104 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  104 (193)
                      ..+.+.|++|+..+......   .  ....++++++.|+..   +..+....-....+....   ..|.++|.||.|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~---~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL---GATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH---TSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh---CCCceeeeecccccc
Confidence            35788999999765332211   1  224568888998753   343333322222222222   368889999999865


Q ss_pred             CCCCCcc------------------C--HHHHHH---HHHh--CCCcEEEecCCCCcCHHHHHHHHHHHHH
Q psy38           105 SGVPREV------------------S--EAEAKA---FASQ--NDILHFETSSRSGFQVENAFTAVTQEIY  150 (193)
Q Consensus       105 ~~~~~~v------------------~--~~~~~~---~~~~--~~~~~~~~Sa~~~~~i~e~f~~i~~~i~  150 (193)
                      .......                  .  ......   ....  ..++++.+||.+|+|+++++..|.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            2100000                  0  000000   0111  3468999999999999999999887644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.43  E-value=0.00027  Score=53.50  Aligned_cols=109  Identities=11%  Similarity=0.017  Sum_probs=64.1

Q ss_pred             EEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccC
Q psy38            33 IKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVS  112 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~  112 (193)
                      +.+.|.+|.|.-.-   -.....-+|.++++......+..+-.   ...+.+.     .- ++|.||+|+.+.   ....
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~---k~gilE~-----aD-i~vvNKaD~~~~---~~~~  208 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGI---KKGIFEL-----AD-MIAVNKADDGDG---ERRA  208 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------C---CTTHHHH-----CS-EEEEECCSTTCC---HHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhh---hhhHhhh-----hh-eeeEeccccccc---hHHH
Confidence            44567777664321   12234458999999998875543322   2233332     12 489999998652   2222


Q ss_pred             HHHHHHHHHh----------CCCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38           113 EAEAKAFASQ----------NDILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus       113 ~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      ......+...          +..+++.+||.++.|+++++++|.+..-.....+
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G  262 (323)
T d2qm8a1         209 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATG  262 (323)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCC
Confidence            2221122211          3458999999999999999999988766555444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00019  Score=56.01  Aligned_cols=109  Identities=13%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             EEEEeeCCCccccccch-----hhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCC----
Q psy38            34 KLQLWDTAGQERFRSIT-----KSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQ----  104 (193)
Q Consensus        34 ~l~l~D~~g~~~~~~~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----  104 (193)
                      .+.+|||+|........     ...+..+|.+|++.|..-.+  .+ ..++..+...    +.|+++|.||+|...    
T Consensus       108 ~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~--~d-~~l~~~l~~~----~k~~~~V~nK~D~~~~~~~  180 (400)
T d1tq4a_         108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK--ND-IDIAKAISMM----KKEFYFVRTKVDSDITNEA  180 (400)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCH--HH-HHHHHHHHHT----TCEEEEEECCHHHHHHHHH
T ss_pred             eEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCH--HH-HHHHHHHHHc----CCCEEEEEeCcccccchhh
Confidence            36699999975433222     23355688888887643211  11 2334444443    479999999999631    


Q ss_pred             CCCCCccCHHHH--------HHHHHhCCC---cEEEecCCCC--cCHHHHHHHHHHHH
Q psy38           105 SGVPREVSEAEA--------KAFASQNDI---LHFETSSRSG--FQVENAFTAVTQEI  149 (193)
Q Consensus       105 ~~~~~~v~~~~~--------~~~~~~~~~---~~~~~Sa~~~--~~i~e~f~~i~~~i  149 (193)
                      .........+..        .......++   ++|.+|..+.  .++.++.+++.+.+
T Consensus       181 ~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         181 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             hcccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            000111222211        111222333   6888887653  47888877776654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00061  Score=51.55  Aligned_cols=92  Identities=11%  Similarity=-0.078  Sum_probs=53.0

Q ss_pred             hccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCcc--CHHHHHHHHH-------hC
Q psy38            53 YYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREV--SEAEAKAFAS-------QN  123 (193)
Q Consensus        53 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~-------~~  123 (193)
                      +...+|.+++|......+..+-...   .+.+..     - ++|.||+|+...   ...  ...+......       .+
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~a-----D-i~VvNKaD~~~~---~~~~~~~~~~~~al~~~~~~~~~w  231 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKK---GLMEVA-----D-LIVINKDDGDNH---TNVAIARHMYESALHILRRKYDEW  231 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCH---HHHHHC-----S-EEEECCCCTTCH---HHHHHHHHHHHHHHHHSCCSBTTB
T ss_pred             hhhccceEEEEecCCCchhhhhhch---hhhccc-----c-EEEEEeecccch---HHHHHHHHHHHHHhhhcccCCCCC
Confidence            4566899999987765554444333   333331     2 488999998652   111  1111111111       13


Q ss_pred             CCcEEEecCCCCcCHHHHHHHHHHHHHHHhcCC
Q psy38           124 DILHFETSSRSGFQVENAFTAVTQEIYNRVQSG  156 (193)
Q Consensus       124 ~~~~~~~Sa~~~~~i~e~f~~i~~~i~~~~~~~  156 (193)
                      ..+++.|||.+|.||+++++.|.+..-.....+
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG  264 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFKTALTASG  264 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHHHHHHhCC
Confidence            357999999999999999999987655444433

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.84  E-value=0.003  Score=45.90  Aligned_cols=87  Identities=10%  Similarity=-0.029  Sum_probs=47.5

Q ss_pred             CCcceeeEEEEEEEecCCcEEEEEEeeCCCccccccc-------hh--hhccCccEEEEEEeCCChhHHhhH-HHHHHHH
Q psy38            13 DPTVGVDFFARLVTMRDGARIKLQLWDTAGQERFRSI-------TK--SYYRNSVGALLVYDITSRASFEHI-PVWMMEA   82 (193)
Q Consensus        13 ~pt~~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-------~~--~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i   82 (193)
                      .+|. .+........ +|  ..+.|+||||-.+....       ..  ......++++||++++... +... ...+..+
T Consensus        64 ~~~T-~~~~~~~~~~-~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r-~~~~~~~~l~~l  138 (257)
T d1h65a_          64 QSEG-PRPVMVSRSR-AG--FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAI  138 (257)
T ss_dssp             SCCC-SSCEEEEEEE-TT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-CCHHHHHHHHHH
T ss_pred             CCcc-eeEEEEEEEe-cc--EEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCC-CCHHHHHHHHHH
Confidence            3443 2444445555 66  56889999996432111       11  1223568899998876531 1111 2233333


Q ss_pred             HHhcCCC-CCeEEEEeeCCCCCC
Q psy38            83 KRHIEPH-RPVFALVGCKLDLLQ  104 (193)
Q Consensus        83 ~~~~~~~-~~piilv~nK~Dl~~  104 (193)
                      ....+.. -.++++|.||.|...
T Consensus       139 ~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         139 TDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             HHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HHHcchhhhhCEEEEEECcccCC
Confidence            3333211 246779999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.93  E-value=0.034  Score=40.87  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             EEEEEeeCCCccc-------------cccchhhhccCccEEEEEEe-CCChhHHhhHHHHHHHHHHhcCCCCCeEEEEee
Q psy38            33 IKLQLWDTAGQER-------------FRSITKSYYRNSVGALLVYD-ITSRASFEHIPVWMMEAKRHIEPHRPVFALVGC   98 (193)
Q Consensus        33 ~~l~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n   98 (193)
                      ..+.++|+||...             ...+...|+.+++.+|+++. ......-.....+...+.    +....+++|.|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEe
Confidence            3578999999643             12345678889998777764 333222233444444433    33457789999


Q ss_pred             CCCCCC
Q psy38            99 KLDLLQ  104 (193)
Q Consensus        99 K~Dl~~  104 (193)
                      |+|...
T Consensus       207 k~D~~~  212 (306)
T d1jwyb_         207 KLDLMD  212 (306)
T ss_dssp             CTTSSC
T ss_pred             cccccc
Confidence            999854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.82  E-value=0.055  Score=39.47  Aligned_cols=67  Identities=21%  Similarity=0.191  Sum_probs=41.5

Q ss_pred             EEEEeeCCCcccc-------------ccchhhhccCccEEE-EEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            34 KLQLWDTAGQERF-------------RSITKSYYRNSVGAL-LVYDITSRASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        34 ~l~l~D~~g~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      .+.|+|+||-...             ..+...|+...+.+| ++.+.+...+-..+..|...+    .+...++++|.||
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk  201 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITK  201 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEEC
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEec
Confidence            4789999995321             133456677777554 555555444444445554443    3344577899999


Q ss_pred             CCCCC
Q psy38           100 LDLLQ  104 (193)
Q Consensus       100 ~Dl~~  104 (193)
                      .|+..
T Consensus       202 ~D~~~  206 (299)
T d2akab1         202 LDLMD  206 (299)
T ss_dssp             GGGSC
T ss_pred             ccccc
Confidence            99865

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=86.88  E-value=0.29  Score=33.83  Aligned_cols=92  Identities=15%  Similarity=0.054  Sum_probs=53.0

Q ss_pred             EEEEEeeCCCccccccch----hhhc--------cCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            33 IKLQLWDTAGQERFRSIT----KSYY--------RNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~----~~~~--------~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      ..+.|.||+|...+....    ..+.        ...+-.++|.|++.. +....+...+..+.       +.- ++.||
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~-lI~TK  160 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTG-VIVTK  160 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSE-EEEEC
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------Cce-EEEec
Confidence            467899999965443211    1111        134668889988753 34444444333221       333 78999


Q ss_pred             CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHHH
Q psy38           100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVENA  141 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e~  141 (193)
                      .|-..       ..-.+...+...++|+..++.  |++.+++
T Consensus       161 lDet~-------~~G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         161 LDGTA-------KGGVLIPIVRTLKVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             TTSSC-------CCTTHHHHHHHHCCCEEEEEC--SSSTTCE
T ss_pred             cCCCC-------CccHHHHHHHHHCCCEEEEeC--CCChHhC
Confidence            99533       233355677778888777764  4445443

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.67  E-value=2.2  Score=28.07  Aligned_cols=55  Identities=24%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             CChhHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCCCCCCCCccCHHHHHHHHHhCCCcEEEec
Q psy38            67 TSRASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLLQSGVPREVSEAEAKAFASQNDILHFETS  131 (193)
Q Consensus        67 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  131 (193)
                      +|+.+++..   ++.+.+.......|+|++|.......       ..++..+|+.+.+++++.+-
T Consensus         3 sd~~~l~~~---v~~~~~~l~~AkrPvIi~G~g~~~~~-------a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAA---VDETLKFIANRDKVAVLVGSKLRAAG-------AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHH---HHHHHHHHTTCSCEEEEECTTTTTTT-------CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHH---HHHHHHHHHcCCCEEEEECcCccccc-------hHHHHHHHHHhhceeEEecc
Confidence            455555554   34444444556789999999887533       67888899999999998654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.10  E-value=5.9  Score=26.53  Aligned_cols=77  Identities=14%  Similarity=0.081  Sum_probs=49.3

Q ss_pred             EEEEEEeeCCCccccccchhhhccCccEEEEEEeCCChhHHhhHHHHHHHHHHhcCCCCCeEE-EEeeCCCCCCCCCCCc
Q psy38            32 RIKLQLWDTAGQERFRSITKSYYRNSVGALLVYDITSRASFEHIPVWMMEAKRHIEPHRPVFA-LVGCKLDLLQSGVPRE  110 (193)
Q Consensus        32 ~~~l~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~  110 (193)
                      .+.+.++|+++....  .....+..+|.++++... +..++..+...+..+.+.    +.|++ +|.|+.+..+    ..
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~----~~~~~giv~N~~~~~~----~~  179 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA----GLAILGFVLNRYGRSD----RD  179 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT----TCEEEEEEEEEETSCT----TC
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchhhHHHHHHhhh----hhhhhhhhhccccccc----ch
Confidence            456789999876532  234456679999998876 466777777666655543    35554 7899998644    33


Q ss_pred             cCHHHHHHH
Q psy38           111 VSEAEAKAF  119 (193)
Q Consensus       111 v~~~~~~~~  119 (193)
                      +.......+
T Consensus       180 ~~~~~~~~~  188 (237)
T d1g3qa_         180 IPPEAAEDV  188 (237)
T ss_dssp             CCHHHHHHH
T ss_pred             hhhHHHHhh
Confidence            444444444

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=81.06  E-value=2.1  Score=29.30  Aligned_cols=91  Identities=13%  Similarity=0.141  Sum_probs=54.3

Q ss_pred             EEEEEeeCCCcccccc--c----hhhh--ccCccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEeeCCCCC
Q psy38            33 IKLQLWDTAGQERFRS--I----TKSY--YRNSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGCKLDLL  103 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  103 (193)
                      ..+.|+||+|...+..  .    ...+  .-..+-+++|.+++.. +..+.+...    ....   ++-- ++.||.|-.
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~----~~~~---~~~~-lI~TKlDet  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF----NQAS---KIGT-IIITKMDGT  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH----HHHC---TTEE-EEEECTTSC
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhh----hccc---Ccce-EEEecccCC
Confidence            4678999999654432  1    1111  1135678888888753 223322221    1221   2333 679999953


Q ss_pred             CCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38           104 QSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN  140 (193)
Q Consensus       104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e  140 (193)
                             ...-.+...+...++|+..++.  |.+|++
T Consensus       167 -------~~~G~~l~~~~~~~lPi~~it~--Gq~v~D  194 (211)
T d1j8yf2         167 -------AKGGGALSAVAATGATIKFIGT--GEKIDE  194 (211)
T ss_dssp             -------SCHHHHHHHHHTTTCCEEEEEC--SSSTTC
T ss_pred             -------CcccHHHHHHHHHCcCEEEEeC--CCCccc
Confidence                   3567777888889998887774  555654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=81.05  E-value=0.92  Score=31.25  Aligned_cols=91  Identities=18%  Similarity=0.109  Sum_probs=52.4

Q ss_pred             EEEEEeeCCCccccccc----h---hhhcc-----CccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            33 IKLQLWDTAGQERFRSI----T---KSYYR-----NSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~----~---~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      ..+.|.||+|.......    .   ....+     ..+-.++|.|++.. +....+...+..+       .+-- ++.||
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~-lIlTK  163 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTG-ITLTK  163 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCE-EEEEC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCce-EEEee
Confidence            45789999995432211    1   11222     23578889988653 3343333322211       2333 78999


Q ss_pred             CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38           100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN  140 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e  140 (193)
                      .|-..       ..-.+...+...++|+..++  +|++|++
T Consensus       164 lDe~~-------~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         164 LDGTA-------KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CTTCT-------TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCCC-------CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            99633       34456677788889888777  4555544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=81.03  E-value=0.65  Score=32.08  Aligned_cols=91  Identities=20%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             EEEEEeeCCCccccccch----hhhcc--------CccEEEEEEeCCCh-hHHhhHHHHHHHHHHhcCCCCCeEEEEeeC
Q psy38            33 IKLQLWDTAGQERFRSIT----KSYYR--------NSVGALLVYDITSR-ASFEHIPVWMMEAKRHIEPHRPVFALVGCK   99 (193)
Q Consensus        33 ~~l~l~D~~g~~~~~~~~----~~~~~--------~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK   99 (193)
                      +.+.|+||+|...+....    ..+.+        ..+-.++|.|++.. +.+..+...   ....    .+.- ++.||
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~---~~~~----~~~~-lI~TK  165 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIF---KEAV----NVTG-IILTK  165 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHH---HHHS----CCCE-EEEEC
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhh---cccc----CCce-EEEec
Confidence            457899999964433211    11111        13568889998653 333333222   2221    2334 78999


Q ss_pred             CCCCCCCCCCccCHHHHHHHHHhCCCcEEEecCCCCcCHHH
Q psy38           100 LDLLQSGVPREVSEAEAKAFASQNDILHFETSSRSGFQVEN  140 (193)
Q Consensus       100 ~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~e  140 (193)
                      .|-..       ..-.+...+...+.|+..++.  |+++++
T Consensus       166 lDe~~-------~~G~~l~~~~~~~~Pi~~i~~--Gq~v~D  197 (213)
T d1vmaa2         166 LDGTA-------KGGITLAIARELGIPIKFIGV--GEKAED  197 (213)
T ss_dssp             GGGCS-------CTTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred             ccCCC-------cccHHHHHHHHHCCCEEEEeC--CCCccc
Confidence            99532       334566777778888887774  555554