Psyllid ID: psy3913

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MGDANTRHFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccc
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccEEcHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccEEcc
mgdantrhfinrldlnkggslveNFTVWKEEADKIIQSVLINvdanaditkhkidhtmytgnLGVGYMLWYVAqspiyaseaptyYLKARRYLDNLKNVLAtkkhrcitdysaflcgdaGIHAVLGVFYNavgdkersqchFDMYTKLATHIKAIDYVkfggdeflvgRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILsgrsysqannlrcplmyhyygteylgachgLSGILQVLLCEKnyvksnpdieKDIKETVDFLLKlqmpngnfpadlkelysptdaksAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWekgllkkgpgichgvsgnGYAFLLLYRLTKDEQYLHKAYLFANfmlsddfkrnarmpdapfslyeglagtacffidlmqpekaafpfmdvf
mgdantrhfinrldlnkggsLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
MGDANTRHFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
*******HFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAF******
****NTRHFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKN**************AFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYS**D**SAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
MGDANTRHFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
*****TRHFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSP***KSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDANTRHFINRLDLNKGGSLVENFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q9Y0Y7419 LanC-like protein 3 homol yes N/A 0.895 0.904 0.441 4e-89
Q29HZ1420 LanC-like protein 3 homol yes N/A 0.898 0.904 0.436 9e-89
Q8CD19420 LanC-like protein 3 OS=Mu yes N/A 0.839 0.845 0.437 2e-84
Q6ZV70420 LanC-like protein 3 OS=Ho yes N/A 0.839 0.845 0.434 5e-84
Q90ZL2405 LanC-like protein 1 OS=Da yes N/A 0.881 0.920 0.361 1e-63
Q9QX69399 LanC-like protein 1 OS=Ra no N/A 0.803 0.852 0.386 5e-61
Q9JJK2450 LanC-like protein 2 OS=Mu no N/A 0.900 0.846 0.360 1e-60
Q9NS86450 LanC-like protein 2 OS=Ho no N/A 0.898 0.844 0.352 2e-59
O89112399 LanC-like protein 1 OS=Mu no N/A 0.803 0.852 0.378 2e-59
O43813399 LanC-like protein 1 OS=Ho no N/A 0.803 0.852 0.375 5e-59
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1 Back     alignment and function desciption
 Score =  328 bits (841), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 173/392 (44%), Positives = 239/392 (60%), Gaps = 13/392 (3%)

Query: 36  IQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDN 95
           + ++L +   N+D   ++ D  +Y GN G+ +M W +          P     A  ++ N
Sbjct: 36  VDAILEHCHPNSDDEDNRGD--LYVGNAGIAFMFWKLNSCEQTRDLYPALD-HAASFIRN 92

Query: 96  LKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAI 155
            K      K R    YS FLCG+AGI+AV      A+ + E        +       K  
Sbjct: 93  AKVNANRYKKRSAERYS-FLCGNAGIYAVSAAISQALKETEELSDDLANFKSGIPCSKEF 151

Query: 156 DYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRC 215
            + K+G DE LVGRAGYL+G  W    L  + ++ +D  +IC  ++ SGR YS+ NN  C
Sbjct: 152 MHTKYGCDEVLVGRAGYLSGCYWLNDVLPEKKITDDDLVSICQLIVTSGREYSKQNNSPC 211

Query: 216 PLMYHYYGTEYLGACHGLSGILQVLLCE---KNYVKSNPDIE-KDIKETVDFLLKLQMPN 271
           PLMY Y+GTEYLGA HGL  IL +LL     +    S P  E +DIK ++DF L+LQ  +
Sbjct: 212 PLMYQYHGTEYLGAAHGLCAILHMLLDSPWFRTLPISAPAAELRDIKRSIDFFLELQDSD 271

Query: 272 GNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVI 331
           GNFP  L++L S  D +     LVHWCHGAPG +Y++AKAYL + EEKYL S  +C +++
Sbjct: 272 GNFPVALEDLRSGRDKR-----LVHWCHGAPGAVYVLAKAYLIFKEEKYLASLRRCADMV 326

Query: 332 WEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDA 391
           W+KG L+KGPGICHGV+GNGY FLLL+RLT + +YL++A+ F   + + +FK  AR PD 
Sbjct: 327 WKKGFLRKGPGICHGVAGNGYVFLLLFRLTNEMRYLYRAHKFMELLTNAEFKLRARTPDR 386

Query: 392 PFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF 423
           P SLYEG+AGT C+ +DL++PE+A FPFMDVF
Sbjct: 387 PHSLYEGVAGTVCYLVDLLEPEQAYFPFMDVF 418

Drosophila melanogaster (taxid: 7227)
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1 Back     alignment and function description
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2 Back     alignment and function description
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1 Back     alignment and function description
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2 Back     alignment and function description
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1 Back     alignment and function description
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1 Back     alignment and function description
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
260790717441 hypothetical protein BRAFLDRAFT_76662 [B 0.898 0.861 0.455 1e-100
443711040411 hypothetical protein CAPTEDRAFT_115834 [ 0.955 0.982 0.457 1e-99
307189447426 LanC-like protein 3-like protein [Campon 0.983 0.976 0.429 5e-99
427796835 528 Putative lanthionine synthetase c-like p 0.966 0.774 0.435 2e-97
241782112415 conserved hypothetical protein [Ixodes s 0.959 0.978 0.422 1e-96
357616506407 putative Lancl1 protein [Danaus plexippu 0.947 0.985 0.440 2e-96
328720954405 PREDICTED: lanC-like protein 3 homolog [ 0.910 0.950 0.435 3e-94
405950399416 LanC-like protein 3 [Crassostrea gigas] 0.966 0.983 0.421 6e-94
189239484408 PREDICTED: similar to Lancl1 protein [Tr 0.950 0.985 0.435 3e-92
328720962380 PREDICTED: lanC-like protein 3 homolog [ 0.732 0.815 0.5 2e-90
>gi|260790717|ref|XP_002590388.1| hypothetical protein BRAFLDRAFT_76662 [Branchiostoma floridae] gi|229275580|gb|EEN46399.1| hypothetical protein BRAFLDRAFT_76662 [Branchiostoma floridae] Back     alignment and taxonomy information
 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/389 (45%), Positives = 256/389 (65%), Gaps = 9/389 (2%)

Query: 38  SVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLK 97
           SV+ ++ +         D  +Y G  GV Y LWYVA+S  +      Y  KA+ Y+D   
Sbjct: 59  SVIQDISSKLSANFANSDGGLYVGCAGVAYALWYVAESGNFPDRKEAYLQKAKEYIDVNF 118

Query: 98  NVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDY 157
             L   + R +    +FL G+AG++    + YN++GDK++S      Y +LA     +++
Sbjct: 119 QFLVRHEDRSML--PSFLLGNAGVYVAGALIYNSLGDKQKSTEFVQKYAELAPICLPVNF 176

Query: 158 VKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRT---AICNALILSGRSYSQANNLR 214
           ++ G DE  VGRAGYL G+I   R+LG Q++         A+C A++ SGR YS+ +N  
Sbjct: 177 LRCGSDELFVGRAGYLCGVIELRRRLGVQVLPQTGDASVHALCAAMVTSGREYSKRHNSP 236

Query: 215 CPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNF 274
            PLMY YYGTEYLGA HG++GIL +LL   +++++NPD ++D++  VD++L ++   GN+
Sbjct: 237 SPLMYAYYGTEYLGAAHGMAGILLMLLSFPDFLQANPDADRDVRGAVDYMLSVER-EGNY 295

Query: 275 PADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEK 334
           P    E++ P   +   +ELVHWCHGAPGVIYL+A+AYL W ++KYL +C++CGE++W +
Sbjct: 296 PPATDEVHRP---RPPEHELVHWCHGAPGVIYLLARAYLVWRDDKYLQACLRCGELVWSR 352

Query: 335 GLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFS 394
           GLLKKGPGICHGV+GNGY FLLLYRLT +  +LH A  F  F+ + +F++++R PD P+S
Sbjct: 353 GLLKKGPGICHGVAGNGYVFLLLYRLTGEPVHLHHAEQFQEFLFTQEFQQDSRTPDCPYS 412

Query: 395 LYEGLAGTACFFIDLMQPEKAAFPFMDVF 423
           LYEG+AGT CF  DL  PEKAAFPF +VF
Sbjct: 413 LYEGVAGTVCFMSDLANPEKAAFPFSEVF 441

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Order:

Class:

Phylum: Chordata

Superkingdom: Eukaryota
>gi|443711040|gb|ELU04987.1| hypothetical protein CAPTEDRAFT_115834 [Capitella teleta] Back     alignment and taxonomy information
>gi|307189447|gb|EFN73857.1| LanC-like protein 3-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|427796835|gb|JAA63869.1| Putative lanthionine synthetase c-like protein 1, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|241782112|ref|XP_002400333.1| conserved hypothetical protein [Ixodes scapularis] gi|215510735|gb|EEC20188.1| conserved hypothetical protein [Ixodes scapularis] Back     alignment and taxonomy information
>gi|357616506|gb|EHJ70233.1| putative Lancl1 protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|328720954|ref|XP_001943086.2| PREDICTED: lanC-like protein 3 homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|405950399|gb|EKC18390.1| LanC-like protein 3 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|189239484|ref|XP_975458.2| PREDICTED: similar to Lancl1 protein [Tribolium castaneum] gi|270009564|gb|EFA06012.1| hypothetical protein TcasGA2_TC008840 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328720962|ref|XP_001942964.2| PREDICTED: lanC-like protein 3 homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
FB|FBgn0027498419 CG2061 [Drosophila melanogaste 0.893 0.902 0.445 1.3e-84
UNIPROTKB|Q29HZ1420 GA15215 "LanC-like protein 3 h 0.898 0.904 0.436 3.9e-83
RGD|1563642420 Lancl3 "LanC lantibiotic synth 0.839 0.845 0.437 1.4e-80
UNIPROTKB|G3X6C9420 LANCL3 "Uncharacterized protei 0.839 0.845 0.437 6e-80
MGI|MGI:2443335420 Lancl3 "LanC lantibiotic synth 0.839 0.845 0.437 7.6e-80
UNIPROTKB|Q6ZV70420 LANCL3 "LanC-like protein 3" [ 0.839 0.845 0.434 1.6e-79
UNIPROTKB|E2RTM0422 LANCL3 "Uncharacterized protei 0.839 0.841 0.434 4.2e-79
UNIPROTKB|E1C809416 LANCL3 "Uncharacterized protei 0.841 0.855 0.431 5.4e-79
UNIPROTKB|J9NU19388 LANCL3 "Uncharacterized protei 0.732 0.798 0.423 5.2e-65
UNIPROTKB|F1NB48239 LANCL3 "Uncharacterized protei 0.520 0.920 0.510 1.9e-60
FB|FBgn0027498 CG2061 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 175/393 (44%), Positives = 242/393 (61%)

Query:    36 IQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDN 95
             + ++L +   N+D   ++ D  +Y GN G+ +M W +          P     A  ++ N
Sbjct:    36 VDAILEHCHPNSDDEDNRGD--LYVGNAGIAFMFWKLNSCEQTRDLYPALD-HAASFIRN 92

Query:    96 LKNVLATK-KHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKA 154
              K V A + K R    YS FLCG+AGI+AV      A+ + E        +       K 
Sbjct:    93 AK-VNANRYKKRSAERYS-FLCGNAGIYAVSAAISQALKETEELSDDLANFKSGIPCSKE 150

Query:   155 IDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLR 214
               + K+G DE LVGRAGYL+G  W    L  + ++ +D  +IC  ++ SGR YS+ NN  
Sbjct:   151 FMHTKYGCDEVLVGRAGYLSGCYWLNDVLPEKKITDDDLVSICQLIVTSGREYSKQNNSP 210

Query:   215 CPLMYHYYGTEYLGACHGLSGILQVLLCE---KNYVKSNPDIE-KDIKETVDFLLKLQMP 270
             CPLMY Y+GTEYLGA HGL  IL +LL     +    S P  E +DIK ++DF L+LQ  
Sbjct:   211 CPLMYQYHGTEYLGAAHGLCAILHMLLDSPWFRTLPISAPAAELRDIKRSIDFFLELQDS 270

Query:   271 NGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEV 330
             +GNFP  L++L S  D +     LVHWCHGAPG +Y++AKAYL + EEKYL S  +C ++
Sbjct:   271 DGNFPVALEDLRSGRDKR-----LVHWCHGAPGAVYVLAKAYLIFKEEKYLASLRRCADM 325

Query:   331 IWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPD 390
             +W+KG L+KGPGICHGV+GNGY FLLL+RLT + +YL++A+ F   + + +FK  AR PD
Sbjct:   326 VWKKGFLRKGPGICHGVAGNGYVFLLLFRLTNEMRYLYRAHKFMELLTNAEFKLRARTPD 385

Query:   391 APFSLYEGLAGTACFFIDLMQPEKAAFPFMDVF 423
              P SLYEG+AGT C+ +DL++PE+A FPFMDVF
Sbjct:   386 RPHSLYEGVAGTVCYLVDLLEPEQAYFPFMDVF 418
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0005575 "cellular_component" evidence=ND
GO:0003824 "catalytic activity" evidence=IEA
UNIPROTKB|Q29HZ1 GA15215 "LanC-like protein 3 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
RGD|1563642 Lancl3 "LanC lantibiotic synthetase component C-like 3 (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3X6C9 LANCL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2443335 Lancl3 "LanC lantibiotic synthetase component C-like 3 (bacterial)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZV70 LANCL3 "LanC-like protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTM0 LANCL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C809 LANCL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NU19 LANCL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NB48 LANCL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q90ZL2LANC1_DANRENo assigned EC number0.36180.88170.9209yesN/A
Q29HZ1LANC3_DROPSNo assigned EC number0.43620.89830.9047yesN/A
Q6ZV70LANC3_HUMANNo assigned EC number0.43440.83920.8452yesN/A
Q9Y0Y7LANC3_DROMENo assigned EC number0.44130.89590.9045yesN/A
Q8CD19LANC3_MOUSENo assigned EC number0.43710.83920.8452yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
cd04794343 cd04794, euk_LANCL, eukaryotic Lanthionine synthet 1e-126
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 3e-77
cd04434343 cd04434, LanC_like, LanC-like proteins 1e-65
cd04792825 cd04792, LanM-like, LanM-like proteins 9e-18
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 3e-12
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 3e-06
cd04793382 cd04793, LanC, LanC is the cyclase enzyme of the l 3e-06
cd04791321 cd04791, LanC_SerThrkinase, Lanthionine synthetase 1e-04
COG4403963 COG4403, LcnDR2, Lantibiotic modifying enzyme [Def 0.003
cd04791321 cd04791, LanC_SerThrkinase, Lanthionine synthetase 0.004
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information 
 Score =  368 bits (946), Expect = e-126
 Identities = 155/361 (42%), Positives = 220/361 (60%), Gaps = 19/361 (5%)

Query: 59  YTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGD 118
           YTG  G+ Y+   + + P   +   TY   A  Y+       A+ +        +FLCG+
Sbjct: 1   YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIK------ASLRAIPDDRRISFLCGN 54

Query: 119 AGIHAVLGVFYNAVGD-KERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGII 177
           AG++AV    Y+ + D  E  +        L + +          DE L GRAGYL  ++
Sbjct: 55  AGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSG---LPDELLYGRAGYLYALL 111

Query: 178 WAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGIL 237
           +  ++ G + +      +IC+A++ SGR+ +      CPLMY ++G EYLGA HGL+GIL
Sbjct: 112 FLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGIL 171

Query: 238 QVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHW 297
            +LL    ++   P +   IK ++D+LL LQ P+GNFP+ L             + LV W
Sbjct: 172 YILLQTPLFL-LKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKR--------DRLVQW 222

Query: 298 CHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLL 357
           CHGAPG++YL+AKAYL + EE+YL + IKCGE+IW++GLLKKGPG+CHG++GN YAFLLL
Sbjct: 223 CHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLL 282

Query: 358 YRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAF 417
           YRLT D +YL++A  FA F+++  FK  AR+PD PFSL+EGLAGTACF  DL+QP +A F
Sbjct: 283 YRLTGDLKYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGF 342

Query: 418 P 418
           P
Sbjct: 343 P 343

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
KOG2787|consensus403 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 100.0
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 100.0
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 100.0
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 100.0
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 100.0
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 100.0
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 100.0
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.97
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 99.96
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 99.96
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 99.95
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 99.94
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 99.94
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.93
KOG2787|consensus403 99.84
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 97.74
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 97.57
COG1331 667 Highly conserved protein containing a thioredoxin 97.56
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.2
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 97.1
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.99
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.83
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.63
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 96.61
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 96.55
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 96.38
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 96.3
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 94.78
COG1331667 Highly conserved protein containing a thioredoxin 94.08
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 93.39
PF03663 370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 93.35
PTZ00470 522 glycoside hydrolase family 47 protein; Provisional 91.44
PLN02993763 lupeol synthase 87.5
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 87.3
KOG2430|consensus 587 87.1
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 86.1
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 85.41
PTZ00470 522 glycoside hydrolase family 47 protein; Provisional 84.9
PLN02993763 lupeol synthase 84.86
PF06917557 Pectate_lyase_2: Periplasmic pectate lyase; InterP 83.46
PF01532 452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 83.38
KOG3760|consensus594 82.68
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 82.28
PLN03012759 Camelliol C synthase 81.16
KOG2429|consensus 622 80.72
>KOG2787|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-78  Score=538.55  Aligned_cols=390  Identities=37%  Similarity=0.669  Sum_probs=347.1

Q ss_pred             CCCCCCCCCCCCCCC---Cccc---------chhHHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHH
Q psy3913           5 NTRHFINRLDLNKGG---SLVE---------NFTVWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYV   72 (423)
Q Consensus         5 ~~~~~~n~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l   72 (423)
                      ..|+|+||||+...+   ....         .++.+++.+..+.+.+++.....+  ...+.+.++|+|.+|++++++++
T Consensus         2 e~r~~~np~pd~a~G~~e~~~~~~~e~~~~~~~e~~~r~~~~ikd~~~~~~~~~S--~d~~~d~tlYtG~~GiAfl~~kl   79 (403)
T KOG2787|consen    2 ERRAFVNPFPDDASGENETVGSEPDEPTGKLFTEFIKRLATKIKDLVVEMTWGKS--GDEVRDGTLYTGWLGIAFLYLKL   79 (403)
T ss_pred             cccccCCCCcccccCCCccccCCCcccccccHHHHHHHHHHHHHHHHHHHHhccc--CCCCcCCceeechHHHHHHHHHH
Confidence            469999999997533   1111         227889999999999999887754  34578999999999999999999


Q ss_pred             hhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Q psy3913          73 AQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHI  152 (423)
Q Consensus        73 ~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~  152 (423)
                      +++  |.|.  .++..+.++|+.+...-    ...  ..++|++|.+|++++.+.+++..++++.++..+.++.++... 
T Consensus        80 y~v--Trd~--~~L~~~~e~Vk~~~~~~----~s~--~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~-  148 (403)
T KOG2787|consen   80 YEV--TRDL--YDLLLCLEIVKACLVAS----RSS--RRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLC-  148 (403)
T ss_pred             HHH--hcCH--HHHHHHHHHHHHHHhhc----ccc--CceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccC-
Confidence            999  9987  79999999998887421    112  589999999999999999999999999898888877655541 


Q ss_pred             hhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCccccccccCCCCcceeecCCcccccccc
Q psy3913         153 KAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNLRCPLMYHYYGTEYLGACHG  232 (423)
Q Consensus       153 ~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG  232 (423)
                       +    ++-++|+++|++|++++++++++.++.+.+.++.|++|++.|+.+|++.+++.++++|+||+||+++|.|.|||
T Consensus       149 -~----~dlp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhG  223 (403)
T KOG2787|consen  149 -S----SDLPDELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHG  223 (403)
T ss_pred             -C----ccccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhh
Confidence             1    23468999999999999999999999999999999999999999999988877788999999999999999999


Q ss_pred             hHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHHHH
Q psy3913         233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAKAY  312 (423)
Q Consensus       233 ~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~  312 (423)
                      .+||++.|+.-.-. .+++...++++.+++|+++.+.++||+|.+.++         +.+.+|+||||+||+++.|.+|+
T Consensus       224 LagI~~vLm~~~L~-~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~---------~~drLVhWcHGApGv~~~L~kAy  293 (403)
T KOG2787|consen  224 LAGILYVLMDPTLK-VDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGN---------KRDRLVHWCHGAPGVAYTLAKAY  293 (403)
T ss_pred             HHHHHHHHhCCCCC-CcchhHHHhhhhHHHHHHHccCCCCCCCcccCC---------CcceeeeeccCCchHHHHHHHHH
Confidence            99999999994432 224567889999999999999999999998865         56889999999999999999999


Q ss_pred             HHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHhhchhhhhcCCCCCCC
Q psy3913         313 LFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAP  392 (423)
Q Consensus       313 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  392 (423)
                      ++|++++|++++.++++.+|++|++++++|+|||+|||+|+||.+|++|+|.+|++||.+|++|+++..+..+.+.+|+|
T Consensus       294 ~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~~~g~r~pDrp  373 (403)
T KOG2787|consen  294 QVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGFSHGCRTPDRP  373 (403)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             CccccchHHHHHHHHHccCccCCCCCCCCC
Q psy3913         393 FSLYEGLAGTACFFIDLMQPEKAAFPFMDV  422 (423)
Q Consensus       393 ~gl~~G~aGi~~~Ll~~~~p~~~~fp~~~~  422 (423)
                      +|||+|+||.+|+|++++.|++++||+|++
T Consensus       374 ySLfeG~AG~v~~l~Dll~P~~arFP~~El  403 (403)
T KOG2787|consen  374 YSLFEGVAGTVYLLLDLLDPEQARFPGYEL  403 (403)
T ss_pred             hhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence            999999999999999999999999999986

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>KOG2787|consensus Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>KOG2430|consensus Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG3760|consensus Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>KOG2429|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
3e6u_A411 Crystal Structure Of Human Lancl1 Length = 411 4e-60
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  228 bits (582), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 207/370 (55%), Gaps = 30/370 (8%)
Query: 55  DHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAF 114
           D T YTG  G+  +  Y+    ++    P Y   A  Y+    N L     R IT    F
Sbjct: 70  DGTGYTGWAGIAVL--YLHLYDVFGD--PAYLQLAHGYVKQSLNCLTK---RSIT----F 118
Query: 115 LCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLA 174
           LCGDAG  AV  V Y+ + ++++++   D  T+L  H+  ID      +E L GR GY+ 
Sbjct: 119 LCGDAGPLAVAAVLYHKMNNEKQAE---DCITRL-IHLNKID--PHAPNEMLYGRIGYIY 172
Query: 175 GIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANNL--RCPLMYHYYGTEYLGACHG 232
            +++  +  G + +       IC  ++ SG + ++  N   + PLMY +Y   Y+GA HG
Sbjct: 173 ALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHG 232
Query: 233 LSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAAN 292
           L+GI   L+ + +   S   +   +K +VD++ +L+ P+GN+P  + +           +
Sbjct: 233 LAGIYYYLM-QPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGD---------NRD 282
Query: 293 ELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGY 352
            LVHWCHGAPGVIY++ +AY  + EEKYL    +C +VIW+ GLLKKG G+CHG +GN Y
Sbjct: 283 LLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAY 342
Query: 353 AFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQP 412
           AFL LY LT+D +YL++A  FA + L    +   R PD PFSL+EG+AGT  F  DL+ P
Sbjct: 343 AFLTLYNLTQDMKYLYRACKFAEWCLEYG-EHGCRTPDTPFSLFEGMAGTIYFLADLLVP 401
Query: 413 EKAAFPFMDV 422
            KA FP  ++
Sbjct: 402 TKARFPAFEL 411

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 2e-90
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 6e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
3pmm_A 382 Putative cytoplasmic protein; structural genomics, 2e-07
1nc5_A 373 Hypothetical protein YTER; structural genomics, he 7e-04
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
 Score =  279 bits (713), Expect = 2e-90
 Identities = 136/424 (32%), Positives = 206/424 (48%), Gaps = 36/424 (8%)

Query: 7   RHFINRLDLNKGGSLVENFTVWKEEADKIIQSV------LINVDANADITKHKIDHTMYT 60
           R F N             F        +  Q +      L+        +    D T YT
Sbjct: 16  RAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTGYT 75

Query: 61  GNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAG 120
           G  G+  +  ++          P Y   A  Y+    N L  +          FLCGDAG
Sbjct: 76  GWAGIAVLYLHLYDV----FGDPAYLQLAHGYVKQSLNCLTKRSI-------TFLCGDAG 124

Query: 121 IHAVLGVFYNAVGDKERSQCHFDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAE 180
             AV  V Y+ + ++++++        +   I          +E L GR GY+  +++  
Sbjct: 125 PLAVAAVLYHKMNNEKQAE------DCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVN 178

Query: 181 RQLGRQIMSLEDRTAICNALILSGRSYSQANNL--RCPLMYHYYGTEYLGACHGLSGILQ 238
           +  G + +       IC  ++ SG + ++  N   + PLMY +Y   Y+GA HGL+GI  
Sbjct: 179 KNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYY 238

Query: 239 VLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWC 298
            L+     V     +   +K +VD++ +L+ P+GN+P  + +           + LVHWC
Sbjct: 239 YLMQPSLQVS-QGKLHSLVKPSVDYVCQLKFPSGNYPPCIGD---------NRDLLVHWC 288

Query: 299 HGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLY 358
           HGAPGVIY++ +AY  + EEKYL    +C +VIW+ GLLKKG G+CHG +GN YAFL LY
Sbjct: 289 HGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLY 348

Query: 359 RLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKAAFP 418
            LT+D +YL++A  FA + L +  +   R PD PFSL+EG+AGT  F  DL+ P KA FP
Sbjct: 349 NLTQDMKYLYRACKFAEWCL-EYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFP 407

Query: 419 FMDV 422
             ++
Sbjct: 408 AFEL 411
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Length = 382 Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Length = 373 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 100.0
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 100.0
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 99.95
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.92
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.4
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 98.25
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.1
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 98.1
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.05
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.97
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.95
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.91
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.74
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.53
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.46
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.37
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.09
1nc5_A373 Hypothetical protein YTER; structural genomics, he 96.99
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.92
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 96.68
3k11_A445 Putative glycosyl hydrolase; structural genomics, 96.65
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 96.5
3h7l_A 586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 95.5
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 95.15
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 94.39
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 90.44
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 90.07
1dl2_A 511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 85.96
3e7j_A 749 Heparinase II protein; alpha and beta lyase, alpha 85.58
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 84.82
1nxc_A 478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 81.13
1ks8_A 433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 80.58
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-65  Score=503.30  Aligned_cols=386  Identities=35%  Similarity=0.656  Sum_probs=321.8

Q ss_pred             CCCCCCCCCCCCCCCCC----ccc---c-hh---HHHHHHHHHHHHHHHhCCCCcccccCCCCCCcccchHHHHHHHHHH
Q psy3913           4 ANTRHFINRLDLNKGGS----LVE---N-FT---VWKEEADKIIQSVLINVDANADITKHKIDHTMYTGNLGVGYMLWYV   72 (423)
Q Consensus         4 ~~~~~~~n~~~~~~~~~----~~~---~-~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ly~G~~Gi~~~l~~l   72 (423)
                      .++|||+|||+||+++.    ...   . ++   .++++++++++.+.+.++..     .+.+.++|+|.+||+|++.++
T Consensus        13 ~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-----~~~~~~lY~G~~Gia~~l~~l   87 (411)
T 3e6u_A           13 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSA-----DPRDGTGYTGWAGIAVLYLHL   87 (411)
T ss_dssp             GGGGBCCCCSCCCCHHHHHTTBCTTCCBCHHHHHHHHHHHHHHHHHHHHHTTTS-----CTTCCCSSSSHHHHHHHHHHH
T ss_pred             ccCccCCCCCCccccccccccccccccccHHHHHHHHHHHHHHHHHHHhhcccC-----CCCCCCeeeChHHHHHHHHHH
Confidence            45799999999998531    111   1 22   57777777777777766543     578999999999999999999


Q ss_pred             hhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Q psy3913          73 AQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDKERSQCHFDMYTKLATHI  152 (423)
Q Consensus        73 ~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~  152 (423)
                      ++.  ++++  +|++.+.++++.+.+.+.     +  ..+++++|.+|++++++.+++.+++++..++.++.+.+..   
T Consensus        88 ~~~--t~d~--~yl~~a~~~l~~~~~~l~-----~--~~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~~~~l~~~~---  153 (411)
T 3e6u_A           88 YDV--FGDP--AYLQLAHGYVKQSLNCLT-----K--RSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLN---  153 (411)
T ss_dssp             HHH--HCCH--HHHHHHHHHHHHHHTTCC-----S--CCCCTTTSTHHHHHHHHHHHHHTTCHHHHHHHHHHHHGGG---
T ss_pred             HHh--cCCH--HHHHHHHHHHHHHHHHhc-----c--cCCccccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---
Confidence            999  9886  899999999988877542     3  5789999999999888899999998764444444333222   


Q ss_pred             hhccccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHHHcCcccccccc--CCCCcceeecCCcccccc
Q psy3913         153 KAIDYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALILSGRSYSQANN--LRCPLMYHYYGTEYLGAC  230 (423)
Q Consensus       153 ~~~~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~a  230 (423)
                      ..   ....+.|+++|.||++++++.+++.++++.+.+..+.++++.++++++.+.....  ...|+||.|+++.++|||
T Consensus       154 ~~---~~~~~~dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~a  230 (411)
T 3e6u_A          154 KI---DPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA  230 (411)
T ss_dssp             GG---CTTCCSSTTTSHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTT
T ss_pred             cc---cccCChhhhcCcHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccCCccc
Confidence            11   1234689999999999999999999999888877889999999987765432221  357899999999999999


Q ss_pred             cchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCCccCCCCCccccccccccccccCchHHHHHHHH
Q psy3913         231 HGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANELVHWCHGAPGVIYLMAK  310 (423)
Q Consensus       231 HG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~g~wp~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~  310 (423)
                      ||++||+++|+++++.++ ++.+.+.++++++++++.+.++|+||+++.+         ..+.+++||||++||+.++.+
T Consensus       231 HG~aGI~~~Ll~~~~~~~-~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~---------~~~~~~~wChG~~Gi~~~l~~  300 (411)
T 3e6u_A          231 HGLAGIYYYLMQPSLQVS-QGKLHSLVKPSVDYVCQLKFPSGNYPPCIGD---------NRDLLVHWCHGAPGVIYMLIQ  300 (411)
T ss_dssp             TSHHHHHHHHTCGGGCCC-HHHHHHTHHHHHHHHHHTCCTTSCCCSBTTC---------CCCCCCSSSSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHhhccCCCCCCCCCc---------ccCccccccCCcHHHHHHHHH
Confidence            999999999999998887 6788899999999999987778999987653         345689999999999999999


Q ss_pred             HHHHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHHHcCChHHHHHHHHHHHHhhchhhhhcCCCCC
Q psy3913         311 AYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPD  390 (423)
Q Consensus       311 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  390 (423)
                      ++++++++++.+.|+++.+.+|++|++++++|||||.+|++++|+++++.|++++|+++|.++++++.+.. ....+.++
T Consensus       301 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~lChG~aG~~~~ll~~~~~t~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  379 (411)
T 3e6u_A          301 AYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYG-EHGCRTPD  379 (411)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHCSBTTCSCSTTSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTT-SSCCCCCS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcCccCCCCceecChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cccCCCCC
Confidence            99999999999999999999999998778999999999999999999999999999999999999987542 11334567


Q ss_pred             CCCccccchHHHHHHHHHccCccCCCCCCCCC
Q psy3913         391 APFSLYEGLAGTACFFIDLMQPEKAAFPFMDV  422 (423)
Q Consensus       391 ~~~gl~~G~aGi~~~Ll~~~~p~~~~fp~~~~  422 (423)
                      .++|||+|.|||+++|++++.|++++||+||+
T Consensus       380 ~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~~  411 (411)
T 3e6u_A          380 TPFSLFEGMAGTIYFLADLLVPTKARFPAFEL  411 (411)
T ss_dssp             STTSTTTSHHHHHHHHHHHTSGGGCCCTTTCC
T ss_pred             CCChhhccHHHHHHHHHHHcCCCcccCCCCCC
Confidence            78999999999999999999999999999986
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 423
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 4e-56
d2g0da1 409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 0.001
d2d5ja1 377 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola 6e-04
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  188 bits (478), Expect = 4e-56
 Identities = 61/403 (15%), Positives = 126/403 (31%), Gaps = 27/403 (6%)

Query: 29  KEEADKIIQSVLINVDANADITKHKIDH---TMYTGNLGVGYMLWYVAQSPIYASEAPTY 85
           K+   + ++ ++   D      K   D    T+ TG  G+  ML  +         +  Y
Sbjct: 1   KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNK----DNSKIY 56

Query: 86  YLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVGDK----ERSQCH 141
             K   Y++ + + L       +   S +  G AGI   +              +    +
Sbjct: 57  QKKIDNYIEYIVSKL---STYGLLTGSLY-SGAAGIALSILHLREDDEKYKNLLDSLNRY 112

Query: 142 FDMYTKLATHIKAIDYVKFGGDEFLVGRAGYLAGIIWAERQLG----RQIMSLEDRTAIC 197
            + + +       ++ +     + + G +G L+ ++    +        I++        
Sbjct: 113 IEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKILIINFLSNLTKE 172

Query: 198 NALILSGRSYSQANNLRCPLMYHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDI 257
           N  ++S    S+    +     +  G   +G  HGL+G+  +L        SN      +
Sbjct: 173 NNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSAL 232

Query: 258 KETVDFLLKLQMPNGNFPADLKELYSPTDAKSAANE-----LVHWCHGAPGVIYLMAKAY 312
           ++ +    K ++           L +    K             WC+G PG+  L     
Sbjct: 233 QKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGG 292

Query: 313 LFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNGYAFLLLYRLTKDEQYLHKAYL 372
           L    + +++   K  E   ++ L      ICHG SG      L  RL   +++      
Sbjct: 293 LALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEE 352

Query: 373 FANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKA 415
           F                ++     EG++G              
Sbjct: 353 FNVNSE---QILEEYGDESGTGFLEGISGCILVLSKFEYSINF 392
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 100.0
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 99.92
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 98.28
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.93
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.92
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.02
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 95.71
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 93.76
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 88.89
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 87.09
d2afaa1 411 Putative NAG isomerase YihS {Salmonella typhimuriu 86.54
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 86.47
d1ia6a_ 431 Nonprocessive cellulase Cel9M {Clostridium cellulo 86.46
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 86.12
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 85.9
d1x9da1 453 Class I alpha-1;2-mannosidase, catalytic domain {H 85.28
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 84.68
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 82.18
d1dl2a_ 511 Class I alpha-1;2-mannosidase, catalytic domain {B 82.02
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3e-44  Score=352.79  Aligned_cols=350  Identities=17%  Similarity=0.143  Sum_probs=247.0

Q ss_pred             CCCCcccchHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccCchHHHHHHHHHHHHhC
Q psy3913          54 IDHTMYTGNLGVGYMLWYVAQSPIYASEAPTYYLKARRYLDNLKNVLATKKHRCITDYSAFLCGDAGIHAVLGVFYNAVG  133 (423)
Q Consensus        54 ~~~~ly~G~~Gi~~~l~~l~~~~~~~d~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~G~aGi~~l~~~l~~~~~  133 (423)
                      .+.|+|+|.+||+++|.++++.  ++++  +|.+.+.+.++.+.+.+...  ..  .+.++++|.+|+.+++..+++.. 
T Consensus        29 ~~~sLy~G~~GiaL~l~~l~~~--t~~~--~~~~~a~~~l~~~~~~~~~~--~~--~~~glf~G~~Gi~~~l~~~~~~~-   99 (409)
T d2g0da1          29 GELTLSTGLPGIILMLAELKNK--DNSK--IYQKKIDNYIEYIVSKLSTY--GL--LTGSLYSGAAGIALSILHLREDD-   99 (409)
T ss_dssp             GGGSTTTSHHHHHHHHHTTTTS--TTHH--HHHHHHHHHHHHHHHHHHHH--CC--SCCCTTTSHHHHHHHHGGGTTTC-
T ss_pred             CCCcccCCHHHHHHHHHHHHHh--cCCH--HHHHHHHHHHHHHHHHHhcC--CC--CCcceeCCHHHHHHHHHHHHhcc-
Confidence            4579999999999999999999  8876  89999999999888877642  23  56899999999976654544322 


Q ss_pred             ChhHHHHHHHHHH----HHHHHHhhc---cccCCCCccccccchhHHHHHHHHHHHhCcccCcHHHHHHHHHHHH---Hc
Q psy3913         134 DKERSQCHFDMYT----KLATHIKAI---DYVKFGGDEFLVGRAGYLAGIIWAERQLGRQIMSLEDRTAICNALI---LS  203 (423)
Q Consensus       134 ~~~~l~~~l~~~~----~~~~~~~~~---~~~~~~~~d~l~G~aG~l~~ll~l~~~~~~~~~~~~~i~~i~~~~~---~~  203 (423)
                        ...+..++.+.    +.+......   ......++|+++|.||++.+++.++....+     +....+.+.+.   +.
T Consensus       100 --~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~-----~~~~~i~~~l~~~~~~  172 (409)
T d2g0da1         100 --EKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYD-----DLKILIINFLSNLTKE  172 (409)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGH-----HHHHHHHHHHHHTTSC
T ss_pred             --hhhhHHHHHHHHHHHHHHHHHHHHhhccccCCcccchhcccHHHHHHHHHhcccccc-----HHHHHHHHHHHHHHHh
Confidence              22333333333    333221111   101123579999999999998876654433     23333444333   22


Q ss_pred             Ccc---ccccccCCCCcc----eeecCCcccccccchHHHHHHHhccccccCCCcchHHHHHHHHHHHHHccC---CCCC
Q psy3913         204 GRS---YSQANNLRCPLM----YHYYGTEYLGACHGLSGILQVLLCEKNYVKSNPDIEKDIKETVDFLLKLQM---PNGN  273 (423)
Q Consensus       204 ~~~---~~~~~~~~~~~~----~~~~~~~~~G~aHG~~GI~~~Ll~~~~~~~~~~~~~~~i~~~~~~l~~~~~---~~g~  273 (423)
                      ...   |.... ...+..    ..+.+..++|++||.+||+++|+.++.....++...+.++++++++.+...   ...+
T Consensus       173 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  251 (409)
T d2g0da1         173 NNGLISLYIKS-ENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFL  251 (409)
T ss_dssp             CSSSCTTCBCG-GGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTC
T ss_pred             ccccccccccc-ccccccchhcccCCCCCccchhhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCC
Confidence            211   10000 000000    012356689999999999999999887665466788889999998887532   2456


Q ss_pred             CCCCCccCCC--CCccccccccccccccCchHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHhCCCCCCCcccCchhhHH
Q psy3913         274 FPADLKELYS--PTDAKSAANELVHWCHGAPGVIYLMAKAYLFWGEEKYLNSCIKCGEVIWEKGLLKKGPGICHGVSGNG  351 (423)
Q Consensus       274 wp~~~~~~~~--~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~LChG~aG~~  351 (423)
                      ||+.+.....  ........+.+++||||++||+.+++.++++++|+++.+.++++.+.+|++++..+++|||||.+|++
T Consensus       252 w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~LCHG~aG~~  331 (409)
T d2g0da1         252 WKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLI  331 (409)
T ss_dssp             CCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCSCCTTTSHHHHH
T ss_pred             CCCcCcccccccccccccCcccccccCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCcccCcHHHHH
Confidence            8875421000  00000124457899999999999999999999999999999999999999998777999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhhchhhhhcCCCCCCCCccccchHHHHHHHHHccCccCC-C----CCCCCCC
Q psy3913         352 YAFLLLYRLTKDEQYLHKAYLFANFMLSDDFKRNARMPDAPFSLYEGLAGTACFFIDLMQPEKA-A----FPFMDVF  423 (423)
Q Consensus       352 ~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~p~~~-~----fp~~~~~  423 (423)
                      ++|+.+++.+++++|.+++.++......   ..+...+..++|||+|.|||+++|+++.+|.+. .    |.++|-|
T Consensus       332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L~~~~~  405 (409)
T d2g0da1         332 EICSLFKRLLNTKKFDSYMEEFNVNSEQ---ILEEYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALLLFDDF  405 (409)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHTHHH---HHHSCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGTCCTTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHH---hcccCCCCCCCchhccHHHHHHHHHHhcCCCCCCCcchhhcccccc
Confidence            9999999999999999888877665432   223345567889999999999999999999763 3    7777754
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure