Psyllid ID: psy3942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
VAAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHcccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcEEEEccHHHcHHHccEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHcccccHHHEEEEEEccccccccEEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccccc
Coil and Loop (DISEMBL)
vaaqagnqeeGEKLIDSTLSrikgsskeeGEKLIDLTLSRikgsskvedsvsqSDLVIEAIVENMDIKHklftsvdkiapasailasntsslsITEIASVTnrkdkfvglhffnpvpMMKLLEVIRTNDTSDATYNAVTEWgksigkttivckdtpgftp
Flexible Loop (DISEMBL)
vaaqagnqeegeklidstlsrikgsskeegeklidltlsrikgsskvedsvsqsDLVIEAIVENMDIKHKLFTSVDKIAPASailasntsslsiTEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVtewgksigkttivckdtpgftp
Low Complexity Region (SEG)
VAAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP
Disordered region (IsUnstruct)
******************************************************DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK*******
Disordered Region (DISOPRED)
VAAQAGNQEEGEKLIDSTLS***************LTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP
Disordered Region (DISEMBL)
************KLIDSTLSRIKGSSKEEGEKLIDLTLSRIK***********SDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP
Disordered Region (DISPRO)
VAAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VAAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
P41938	309	Probable 3-hydroxyacyl-Co	yes	N/A	0.787	0.407	0.571	5e-37
Q61425	314	Hydroxyacyl-coenzyme A de	yes	N/A	0.918	0.468	0.476	4e-34
Q16836	314	Hydroxyacyl-coenzyme A de	yes	N/A	0.806	0.410	0.519	5e-34
Q9WVK7	314	Hydroxyacyl-coenzyme A de	yes	N/A	0.918	0.468	0.476	1e-33
P34439	298	Probable 3-hydroxyacyl-Co	no	N/A	0.843	0.453	0.477	1e-33
P00348	314	Hydroxyacyl-coenzyme A de	yes	N/A	0.806	0.410	0.503	5e-33
P77851	281	3-hydroxybutyryl-CoA dehy	yes	N/A	0.756	0.430	0.532	8e-32
P52041	282	3-hydroxybutyryl-CoA dehy	yes	N/A	0.931	0.528	0.463	7e-29
Q9RVG1	278	Probable 3-hydroxybutyryl	yes	N/A	0.956	0.550	0.421	2e-28
P45856	287	Probable 3-hydroxybutyryl	yes	N/A	0.925	0.515	0.453	1e-27

>sp|P41938|HCDH2_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 OS=Caenorhabditis elegans GN=B0272.3 PE=1 SV=1

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 93/126 (73%)

Query: 33  LIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL 92
           L+   L RIK S+ V DSV  +DLVIEAIVEN+DIK KLF  V+  A  + ++ +NTSSL
Sbjct: 87  LVSSVLDRIKMSTNVSDSVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLITTNTSSL 146

Query: 93  SITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152
            + +I      K +F GLHFFNPVPMMKLLEV+R  +TSDAT+N + ++GK++GKTT+ C
Sbjct: 147 RLADIGLNLKDKSRFGGLHFFNPVPMMKLLEVVRHTETSDATFNQLVDYGKTVGKTTVAC 206

Query: 153 KDTPGF 158
           KDTPGF
Sbjct: 207 KDTPGF 212

Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus GN=Hadh PE=1 SV=2

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 4/151 (2%)

Query: 12  EKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
           +K I+ +L R+      E    G++ ++ TLS +  S+     V  +DLV+EAIVEN+ +
Sbjct: 67  KKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKL 126

Query: 68  KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
           K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVPMMKL+EVI+T
Sbjct: 127 KNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKT 186

Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct: 187 PMTSQKTFESLVDFCKTLGKHPVSCKDTPGF 217

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q16836|HCDH_HUMAN Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3

 Score =  143 bits (360), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 93/129 (72%)

Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 89  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 148

Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 149 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 208

Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 209 VSCKDTPGF 217

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9WVK7|HCDH_RAT Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hadh PE=2 SV=1

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 100/151 (66%), Gaps = 4/151 (2%)

Query: 12  EKLIDSTLSRIKGSSKEEGEK----LIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
           +K I+ +L R+      E  K     ++ TLS +  S+     V  +DLV+EAIVEN+ +
Sbjct: 67  KKGIEESLKRMAKKKFTENPKAADEFVEKTLSSLSTSTDAASVVHSTDLVVEAIVENLKL 126

Query: 68  KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
           K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVPMMKL+EVI+T
Sbjct: 127 KNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKT 186

Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct: 187 PMTSQKTFESLVDFCKTLGKHPVSCKDTPGF 217

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|P34439|HCDH1_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 OS=Caenorhabditis elegans GN=F54C8.1 PE=3 SV=1

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 98/136 (72%), Gaps = 1/136 (0%)

Query: 23  KGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPAS 82
           KG+ KE+ +  + LT+SRIK  + V  +V+ +DL+IEA +EN+D+K  +F  +++     
Sbjct: 66  KGTDKEKSD-FVTLTMSRIKTCNNVSTAVADADLIIEAAIENIDLKRGIFAQIEQSCKKD 124

Query: 83  AILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWG 142
           +IL +NTSS  + ++A     K +F GLHFFNPVP+MKLLEVIR++DTSD TY  + ++G
Sbjct: 125 SILTTNTSSFLLEDVAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSDETYATLIKFG 184

Query: 143 KSIGKTTIVCKDTPGF 158
            ++GKTT+ CKD+PGF
Sbjct: 185 TAVGKTTVACKDSPGF 200

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|P00348|HCDH_PIG Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa GN=HADH PE=1 SV=2

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 91/129 (70%)

Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K +LF  +DK A    I ASNT
Sbjct: 89  GDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNT 148

Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT +A+ T R+D+F GLHFFNPVP+MKL+EV++T  TS  T  ++ ++ K++GK  
Sbjct: 149 SSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHP 208

Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 209 VSCKDTPGF 217

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|P77851|HBD_THETC 3-hydroxybutyryl-CoA dehydrogenase OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=hbd PE=3 SV=2

 Score =  135 bits (341), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 89/122 (72%), Gaps = 1/122 (0%)

Query: 38  LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97
           LSRI+G++ +ED+  ++D V+EA +ENMD+K ++F  +D+I     ILASNTSSLSITEI
Sbjct: 66  LSRIRGTTNLEDA-KEADFVVEAAIENMDLKKQIFKELDEICKMETILASNTSSLSITEI 124

Query: 98  ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157
           AS T R +K +G+HFFNPVP+MKL+EVI+   TS+ T+N V E    + KT I  K+ PG
Sbjct: 125 ASATKRPEKVIGMHFFNPVPVMKLVEVIKGLKTSEQTFNVVRELALKVDKTPIEVKEAPG 184

Query: 158 FT 159
           F 
Sbjct: 185 FV 186

Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) (taxid: 580327)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P52041|HBD_CLOAB 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=hbd PE=3 SV=2

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 2/151 (1%)

Query: 9   EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
           + G   I+  LS++    K E    +++ L+RI G+  + +  +  DLVIEA VE MDIK
Sbjct: 38  DRGLDFINKNLSKLVKKGKIEEATKVEI-LTRISGTVDL-NMAADCDLVIEAAVERMDIK 95

Query: 69  HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
            ++F  +D I     ILASNTSSLSITE+AS T R DK +G+HFFNP P+MKL+EVIR  
Sbjct: 96  KQIFADLDNICKPETILASNTSSLSITEVASATKRPDKVIGMHFFNPAPVMKLVEVIRGI 155

Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
            TS  T++AV E   +IGK  +   + PGF 
Sbjct: 156 ATSQETFDAVKETSIAIGKDPVEVAEAPGFV 186

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hbd PE=3 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 20/173 (11%)

Query: 1   VAAQAG--------NQE---EGEKLIDSTLSRIKGSSKEEGEKLIDL---TLSRIKGSSK 46
           VAAQ+G         QE    G+ +I+ +L ++      E  KL D     L RI  ++ 
Sbjct: 18  VAAQSGFDVVVHDQKQEFLDRGKGVIEKSLGKL-----HEKGKLTDAPETVLGRIHFTTD 72

Query: 47  VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDK 106
           ++D  +  DLV+EAIVEN  IK+ LF  + +I     ILASNTSS+ IT +A+ + R  +
Sbjct: 73  LQD-FADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSIPITALATASGRPAQ 131

Query: 107 FVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
           F+G+HF NPVP+M+L+EVIR   TSD T   VTE  + +GKT + C D PGF 
Sbjct: 132 FIGMHFMNPVPLMQLVEVIRGYQTSDETARIVTETAEKLGKTPLSCNDFPGFV 184

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P45856|HBD_BACSU Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgB PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 9   EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
           E G K +   L+R     K   E  +   ++RI  S  +E++   +D+VIEAI ENM  K
Sbjct: 40  EAGLKRLKKQLARDAEKGKRT-ETEVKSVINRISISQTLEEA-EHADIVIEAIAENMAAK 97

Query: 69  HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
            ++F ++D+I P   ILASNTSSL ITEIA+VTNR  + +G+HF NPVP+MKL+EVIR  
Sbjct: 98  TEMFKTLDRICPPHTILASNTSSLPITEIAAVTNRPQRVIGMHFMNPVPVMKLVEVIRGL 157

Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
            TS+ T   V    + +GKT +   D PGF
Sbjct: 158 ATSEETALDVMALAEKMGKTAVEVNDFPGF 187

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
157132312	305	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.987	0.518	0.560	2e-46
215259689	270	3-hydroxyacyl-CoA dehyrogenase [Culex ta	0.812	0.481	0.653	1e-45
307095136	310	L3-hydroxyacylcoenzyme A dehydrogenase [	0.987	0.509	0.543	3e-45
391339439	310	PREDICTED: hydroxyacyl-coenzyme A dehydr	0.806	0.416	0.697	5e-45
253560551	198	putative 3-hydroxyacyl-CoA dehyrogenase	0.812	0.656	0.638	7e-45
242011974	424	Short chain 3-hydroxyacyl-CoA dehydrogen	0.812	0.306	0.653	2e-44
170041182	305	3-hydroxyacyl-coa dehyrogenase [Culex qu	0.987	0.518	0.531	2e-44
239799193	332	ACYPI010176 [Acyrthosiphon pisum]	0.987	0.475	0.543	2e-44
241896891	309	L-3-hydroxyacyl-Coenzyme A dehydrogenase	0.987	0.511	0.543	2e-44
91088569	309	PREDICTED: similar to 3-hydroxyacyl-coa	0.818	0.423	0.618	8e-44

>gi|157132312|ref|XP_001655993.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108881688|gb|EAT45913.1| AAEL002841-PA [Aedes aegypti]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 123/173 (71%), Gaps = 15/173 (8%)

Query: 1   VAAQAGNQ----EEGEKLIDSTLSRIKGSSKE-----------EGEKLIDLTLSRIKGSS 45
           VAA  G++    E  ++L+D  +  IK S +            +G++ +D TL+ +KGS+
Sbjct: 35  VAAATGHKVTLVEVNDQLVDKAIGSIKKSLERVAKKQFKDDASKGQQFMDGTLANLKGST 94

Query: 46  KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKD 105
           K+EDSV+ SDLVIEAIVE M+IKH+LF  +D +AP S I ASNTSSLSI EI SVT R+D
Sbjct: 95  KLEDSVASSDLVIEAIVEKMNIKHELFGKIDAVAPPSTIFASNTSSLSIGEIGSVTKRED 154

Query: 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           +F GLHFFNPVPMMKLLEVIRT  TS+ TY  + E+GK +GKT I CKDTPGF
Sbjct: 155 RFGGLHFFNPVPMMKLLEVIRTEKTSEETYQQLMEFGKRMGKTCITCKDTPGF 207

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215259689|gb|ACJ64336.1| 3-hydroxyacyl-CoA dehyrogenase [Culex tarsalis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 108/130 (83%)

Query: 29  EGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN 88
           +G++ +D TLS++KGS+K+E++V+ +DLV+EAIVE M+IKH+LF+ +D  APASAI  SN
Sbjct: 43  KGQQYVDGTLSKLKGSTKLEEAVASTDLVVEAIVEKMNIKHELFSKIDAAAPASAIFTSN 102

Query: 89  TSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKT 148
           TSSLSI EI SVT R+D+F GLHFFNPVPMMKLLEVIRT  TS+ TY  + E+GK +GKT
Sbjct: 103 TSSLSIAEIGSVTKRQDRFGGLHFFNPVPMMKLLEVIRTEKTSEETYQQLMEFGKKLGKT 162

Query: 149 TIVCKDTPGF 158
            I CKDTPGF
Sbjct: 163 CITCKDTPGF 172

Source: Culex tarsalis

Species: Culex tarsalis

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307095136|gb|ADN29874.1| L3-hydroxyacylcoenzyme A dehydrogenase [Triatoma matogrossensis]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 118/173 (68%), Gaps = 15/173 (8%)

Query: 1   VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEG----EKLIDLTLSRIKGSS 45
           VAAQAGN            ++ +  I   LSR+     ++     E+ I  ++  +K S 
Sbjct: 40  VAAQAGNDVVLVDISENVLDKAKSAIQKNLSRVAKKKFKDDSSKIEEFIKKSMDHLKFSV 99

Query: 46  KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKD 105
            +  +   SDL++EAIVEN+ +KHKLF+S+D IAP   I A+NTSSLS+TEIASVTNRKD
Sbjct: 100 DLTKTAENSDLILEAIVENIGVKHKLFSSIDSIAPKHTIFATNTSSLSVTEIASVTNRKD 159

Query: 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           +F GLHFFNPVP+MKLLEVIRTNDTSD TY  +  WGK+IGKT I CKDTPGF
Sbjct: 160 RFAGLHFFNPVPVMKLLEVIRTNDTSDETYQTLMAWGKAIGKTAITCKDTPGF 212

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391339439|ref|XP_003744057.1| PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like [Metaseiulus occidentalis]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 90/129 (69%), Positives = 105/129 (81%)

Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           GE+ +  TL  IK S   EDSV  +DLV+EAIVEN++IK KLF S+DK APAS I ASNT
Sbjct: 83  GEEFLKKTLGLIKTSVSAEDSVKDTDLVVEAIVENIEIKQKLFASLDKAAPASVIFASNT 142

Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSLSITEIAS T+RKD+F GLHFFNPVP+MKLLEVIR ++TSD T   +T+WGK+IGKTT
Sbjct: 143 SSLSITEIASATDRKDRFGGLHFFNPVPVMKLLEVIRCSETSDDTNQKITDWGKAIGKTT 202

Query: 150 IVCKDTPGF 158
           I CKDTPGF
Sbjct: 203 IACKDTPGF 211

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|253560551|gb|ACT32986.1| putative 3-hydroxyacyl-CoA dehyrogenase [Culex pipiens pipiens]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 107/130 (82%)

Query: 29  EGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN 88
           +G++ +D TLS++KGS+K+E++V+ +DLV+EAIVE M+IKH+LF+ +D  APAS I  SN
Sbjct: 14  KGQQYVDGTLSKLKGSTKLEEAVASTDLVVEAIVEKMNIKHELFSKIDAAAPASTIFTSN 73

Query: 89  TSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKT 148
           TSSLSI EI +VT R+D+F GLHFFNPVPMMKLLEVIRT  TS+ TY  + E+GK +GKT
Sbjct: 74  TSSLSIAEIGAVTKRQDRFGGLHFFNPVPMMKLLEVIRTEKTSEETYQQLMEFGKKLGKT 133

Query: 149 TIVCKDTPGF 158
            I CKDTPGF
Sbjct: 134 CITCKDTPGF 143

Source: Culex pipiens pipiens

Species: Culex pipiens

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011974|ref|XP_002426718.1| Short chain 3-hydroxyacyl-CoA dehydrogenase, putative [Pediculus humanus corporis] gi|212510889|gb|EEB13980.1| Short chain 3-hydroxyacyl-CoA dehydrogenase, putative [Pediculus humanus corporis]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 105/130 (80%)

Query: 29  EGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN 88
           E EK I  ++ R+K S  +E++V+ +DLV+EAIVEN+  KH+LF+S+D IAP   I ASN
Sbjct: 84  EAEKYIAESMGRLKISLDLEETVANTDLVVEAIVENLSAKHRLFSSIDSIAPEHTIFASN 143

Query: 89  TSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKT 148
           TSSLSI++IASVT RKDKF GLHFFNPVP+MKLLE++RTNDTS+ TY  +  WGK IGKT
Sbjct: 144 TSSLSISDIASVTKRKDKFGGLHFFNPVPVMKLLEIVRTNDTSEETYQKLLAWGKLIGKT 203

Query: 149 TIVCKDTPGF 158
           TI CKDTPGF
Sbjct: 204 TITCKDTPGF 213

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041182|ref|XP_001848352.1| 3-hydroxyacyl-coa dehyrogenase [Culex quinquefasciatus] gi|167864717|gb|EDS28100.1| 3-hydroxyacyl-coa dehyrogenase [Culex quinquefasciatus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 121/173 (69%), Gaps = 15/173 (8%)

Query: 1   VAAQAGNQ----EEGEKLIDSTLSRIKGSSKE-----------EGEKLIDLTLSRIKGSS 45
           VAA  G+     E  ++L+   L  IK S +            +G++ +D TLS++KGS+
Sbjct: 35  VAAATGHNVTIVEMNDQLVGKALGGIKKSLERVAKKQFKDDAVKGQQYVDGTLSKLKGST 94

Query: 46  KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKD 105
           K+E++ + +DLV+EAIVE M+IKH+LF+ +D  APAS I  SNTSSLSI EI +VT R+D
Sbjct: 95  KLEEAAASTDLVVEAIVEKMNIKHELFSKIDAAAPASTIFTSNTSSLSIAEIGAVTKRQD 154

Query: 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           +F GLHFFNPVPMMKLLEVIRT  TS+ TY  + E+GK +GKT I CKDTPGF
Sbjct: 155 RFGGLHFFNPVPMMKLLEVIRTEKTSEETYQQLMEFGKKLGKTCITCKDTPGF 207

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239799193|dbj|BAH70529.1| ACYPI010176 [Acyrthosiphon pisum]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 118/173 (68%), Gaps = 15/173 (8%)

Query: 1   VAAQAGNQ----EEGEKLIDSTLSRIKGSSK-----------EEGEKLIDLTLSRIKGSS 45
           ++AQ+G+     E  ++++D T   I+ S +           +EGE  +  +LSRI  S+
Sbjct: 39  ISAQSGHNVTIVELNQEVLDKTHKNIQQSLQRVAKKVYKEKPQEGENFVSESLSRISTST 98

Query: 46  KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKD 105
            + D V  SDLV+EAIVEN+ IKHKLF S+D IAP   I ASNTSSLSI EIA+V  RKD
Sbjct: 99  NLADVVQNSDLVLEAIVENLSIKHKLFKSIDDIAPEKTIFASNTSSLSIGEIAAVCKRKD 158

Query: 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           KF GLHFFNPVP+MKLLEV+RT +TSD TY  +  W K+IGKT I CKDTPGF
Sbjct: 159 KFAGLHFFNPVPVMKLLEVVRTPETSDETYEKLMAWAKAIGKTAITCKDTPGF 211

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241896891|ref|NP_001155916.1| L-3-hydroxyacyl-Coenzyme A dehydrogenase [Acyrthosiphon pisum]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 118/173 (68%), Gaps = 15/173 (8%)

Query: 1   VAAQAGNQ----EEGEKLIDSTLSRIKGSSK-----------EEGEKLIDLTLSRIKGSS 45
           ++AQ+G+     E  ++++D T   I+ S +           +EGE  +  +LSRI  S+
Sbjct: 39  ISAQSGHNVTIVELNQEVLDKTHKNIQQSLQRVAKKVYKEKPQEGENFVSESLSRISTST 98

Query: 46  KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKD 105
            + D V  SDLV+EAIVEN+ IKHKLF S+D IAP   I ASNTSSLSI EIA+V  RKD
Sbjct: 99  NLADVVQNSDLVLEAIVENLSIKHKLFKSIDDIAPEKTIFASNTSSLSIGEIAAVCKRKD 158

Query: 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           KF GLHFFNPVP+MKLLEV+RT +TSD TY  +  W K+IGKT I CKDTPGF
Sbjct: 159 KFAGLHFFNPVPVMKLLEVVRTPETSDETYEKLMAWAKAIGKTAITCKDTPGF 211

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088569|ref|XP_973042.1| PREDICTED: similar to 3-hydroxyacyl-coa dehyrogenase [Tribolium castaneum] gi|270011703|gb|EFA08151.1| hypothetical protein TcasGA2_TC005769 [Tribolium castaneum]

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 103/131 (78%)

Query: 28  EEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS 87
           +   K +  + +RIKG + + ++V  SDLV+EAIVENMD+KHKLF ++D++AP   + AS
Sbjct: 81  QAANKFVSESQARIKGCTDIAEAVKDSDLVVEAIVENMDVKHKLFKNLDEVAPPKTMFAS 140

Query: 88  NTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGK 147
           NTSSLSITEIASVT RKD+F GLHFFNPVP+MKLLEV+RT +TS  TY A   WGK++GK
Sbjct: 141 NTSSLSITEIASVTKRKDRFGGLHFFNPVPVMKLLEVVRTPETSQETYEAFMAWGKAVGK 200

Query: 148 TTIVCKDTPGF 158
           T + CKDTPGF
Sbjct: 201 TCVTCKDTPGF 211

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
WB|WBGene00007129	309	B0272.3 [Caenorhabditis elegan	0.937	0.485	0.5	4e-35
ZFIN|ZDB-GENE-040801-261	309	hadh "hydroxyacyl-Coenzyme A d	0.912	0.472	0.506	1.5e-33
UNIPROTKB|E1BZH9	315	HADH "Uncharacterized protein"	0.937	0.476	0.487	2.5e-33
WB|WBGene00010035	298	F54C8.1 [Caenorhabditis elegan	0.843	0.453	0.477	2.3e-32
UNIPROTKB|E2QVA4	312	HADH "Uncharacterized protein"	0.931	0.477	0.470	2.9e-32
UNIPROTKB|F6XHT8	287	HADH "Uncharacterized protein"	0.931	0.519	0.470	2.9e-32
UNIPROTKB|E9PF18	318	HADH "Hydroxyacyl-coenzyme A d	0.931	0.468	0.464	2.9e-32
UNIPROTKB|J3KQ17	331	HADH "Hydroxyacyl-coenzyme A d	0.931	0.450	0.464	2.9e-32
UNIPROTKB|Q16836	314	HADH "Hydroxyacyl-coenzyme A d	0.931	0.474	0.464	2.9e-32
MGI|MGI:96009	314	Hadh "hydroxyacyl-Coenzyme A d	0.931	0.474	0.470	3.7e-32

WB|WBGene00007129 B0272.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 77/154 (50%), Positives = 107/154 (69%)

Query:     9 EEGEKLIDSTLSRI--KGSSKEEGEK--LIDLTLSRIKGSSKVEDSVSQSDLVIEAIVEN 64
             E+ ++ I ++L R+  K  + +   +  L+   L RIK S+ V DSV  +DLVIEAIVEN
Sbjct:    59 EKAQQGIANSLKRVAKKKHADDAAAQTALVSSVLDRIKMSTNVSDSVKDADLVIEAIVEN 118

Query:    65 MDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEV 124
             +DIK KLF  V+  A  + ++ +NTSSL + +I      K +F GLHFFNPVPMMKLLEV
Sbjct:   119 IDIKRKLFAEVEVAAKPTTLITTNTSSLRLADIGLNLKDKSRFGGLHFFNPVPMMKLLEV 178

Query:   125 IRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +R  +TSDAT+N + ++GK++GKTT+ CKDTPGF
Sbjct:   179 VRHTETSDATFNQLVDYGKTVGKTTVACKDTPGF 212

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

ZFIN|ZDB-GENE-040801-261 hadh "hydroxyacyl-Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 76/150 (50%), Positives = 103/150 (68%)

Query:    13 KLIDSTLSRI---KGSSK-EEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
             K I+++L R+   K + K E+GE  +   L  +  S+     V  +DLV+EAIVEN+ +K
Sbjct:    63 KGIENSLKRVAKKKFAEKPEDGEAFVQKVLKNVSTSTDAASVVHGTDLVVEAIVENLKVK 122

Query:    69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
               LF ++DK+AP   I ASNTSSL I +IAS T R D+F GLHFFNPVPMMKL+EVI+T 
Sbjct:   123 QDLFGALDKVAPEHTIFASNTSSLPIADIASCTARLDRFGGLHFFNPVPMMKLVEVIKTP 182

Query:   129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
              TS  T++A+ E+ K++GK  + CKDTPGF
Sbjct:   183 ATSQQTFDALLEFSKALGKHPVSCKDTPGF 212

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

UNIPROTKB|E1BZH9 HADH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 75/154 (48%), Positives = 105/154 (68%)

Query:     9 EEGEKLIDSTLSRI---KGSSKEE-GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVEN 64
             ++  K I+ +L R+   K + K E G + I+ TL  +  S+     V  +DLVIEAIVEN
Sbjct:    65 KKSTKGIEESLKRVTKKKFADKPEAGAEFIEKTLKNLTTSTDAVAVVHSTDLVIEAIVEN 124

Query:    65 MDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEV 124
              +IK +LF  +DK AP   I  SNTSSL IT++A+ T R+D+F GLHFFNPVPMMKL+EV
Sbjct:   125 QEIKSELFKRLDKFAPEHTIFTSNTSSLQITQLANSTTRQDRFGGLHFFNPVPMMKLVEV 184

Query:   125 IRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             ++T  TS  TY ++ ++ K++GK+ + CKDTPGF
Sbjct:   185 VKTPMTSQKTYESLMDFSKAVGKSPVSCKDTPGF 218

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

WB|WBGene00010035 F54C8.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 65/136 (47%), Positives = 98/136 (72%)

Query:    23 KGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPAS 82
             KG+ KE+ +  + LT+SRIK  + V  +V+ +DL+IEA +EN+D+K  +F  +++     
Sbjct:    66 KGTDKEKSD-FVTLTMSRIKTCNNVSTAVADADLIIEAAIENIDLKRGIFAQIEQSCKKD 124

Query:    83 AILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWG 142
             +IL +NTSS  + ++A     K +F GLHFFNPVP+MKLLEVIR++DTSD TY  + ++G
Sbjct:   125 SILTTNTSSFLLEDVAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSDETYATLIKFG 184

Query:   143 KSIGKTTIVCKDTPGF 158
              ++GKTT+ CKD+PGF
Sbjct:   185 TAVGKTTVACKDSPGF 200

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|E2QVA4 HADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 72/153 (47%), Positives = 102/153 (66%)

Query:    10 EGEKLIDSTLSRIK----GSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             + +K I+ +L R+       + + G++ ++ TLS I  S+     V  +DLV+EAIVEN+
Sbjct:    63 KSKKGIEESLRRVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENL 122

Query:    66 DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
               K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI
Sbjct:   123 KAKNELFKRLDKFASEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPLMKLVEVI 182

Query:   126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +T  TS  TY ++ ++ K +GK  + CKDTPGF
Sbjct:   183 KTPMTSQKTYESLIDFTKVLGKHPVSCKDTPGF 215

GO:0070403 "NAD+ binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|F6XHT8 HADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 72/153 (47%), Positives = 102/153 (66%)

Query:    10 EGEKLIDSTLSRIK----GSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             + +K I+ +L R+       + + G++ ++ TLS I  S+     V  +DLV+EAIVEN+
Sbjct:    38 KSKKGIEESLRRVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENL 97

Query:    66 DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
               K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI
Sbjct:    98 KAKNELFKRLDKFASEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPLMKLVEVI 157

Query:   126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +T  TS  TY ++ ++ K +GK  + CKDTPGF
Sbjct:   158 KTPMTSQKTYESLIDFTKVLGKHPVSCKDTPGF 190

GO:0070403 "NAD+ binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|E9PF18 HADH "Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/153 (46%), Positives = 103/153 (67%)

Query:    10 EGEKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             + +K I+ +L ++      E    G++ ++ TLS I  S+     V  +DLV+EAIVEN+
Sbjct:    69 KSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENL 128

Query:    66 DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
              +K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI
Sbjct:   129 KVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 188

Query:   126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +T  TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct:   189 KTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 221

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|J3KQ17 HADH "Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/153 (46%), Positives = 103/153 (67%)

Query:    10 EGEKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             + +K I+ +L ++      E    G++ ++ TLS I  S+     V  +DLV+EAIVEN+
Sbjct:    65 KSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENL 124

Query:    66 DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
              +K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI
Sbjct:   125 KVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 184

Query:   126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +T  TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct:   185 KTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 217

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046676 "negative regulation of insulin secretion" evidence=IEA

UNIPROTKB|Q16836 HADH "Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/153 (46%), Positives = 103/153 (67%)

Query:    10 EGEKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             + +K I+ +L ++      E    G++ ++ TLS I  S+     V  +DLV+EAIVEN+
Sbjct:    65 KSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENL 124

Query:    66 DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
              +K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI
Sbjct:   125 KVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 184

Query:   126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +T  TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct:   185 KTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 217

GO:0070403 "NAD+ binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;TAS

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:96009 Hadh "hydroxyacyl-Coenzyme A dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 72/153 (47%), Positives = 103/153 (67%)

Query:    10 EGEKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             + +K I+ +L R+      E    G++ ++ TLS +  S+     V  +DLV+EAIVEN+
Sbjct:    65 KSKKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENL 124

Query:    66 DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
              +K++LF  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVPMMKL+EVI
Sbjct:   125 KLKNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVI 184

Query:   126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             +T  TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct:   185 KTPMTSQKTFESLVDFCKTLGKHPVSCKDTPGF 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO

GO:0014823 "response to activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

GO:0046676 "negative regulation of insulin secretion" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070403 "NAD+ binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P41938	HCDH2_CAEEL	1, ., 1, ., 1, ., 3, 5	0.5714	0.7875	0.4077	yes	N/A
P45364	HBD_CLODI	1, ., 1, ., 1, ., 1, 5, 7	0.5123	0.75	0.4270	yes	N/A
P00348	HCDH_PIG	1, ., 1, ., 1, ., 3, 5	0.5038	0.8062	0.4108	yes	N/A
Q16836	HCDH_HUMAN	1, ., 1, ., 1, ., 3, 5	0.5193	0.8062	0.4108	yes	N/A
P77851	HBD_THETC	1, ., 1, ., 1, ., 1, 5, 7	0.5327	0.7562	0.4306	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	7e-59
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	1e-57
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	1e-54
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	2e-54
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	5e-47
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	1e-43
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-39
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	2e-39
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	1e-37
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	5e-37
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	1e-31
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	2e-30
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	7e-30
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	4e-29
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	2e-28
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	4e-27
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	6e-24
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	2e-18
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	2e-14
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	5e-12
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	3e-11

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  180 bits (460), Expect = 7e-59
 Identities = 74/166 (44%), Positives = 102/166 (61%), Gaps = 13/166 (7%)

Query: 1   VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVED 49
           V A+AG +           E+    I+ +L+R+    +   E   D  L+RI  ++ + D
Sbjct: 17  VFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEED-ADAVLARISFTTDLAD 75

Query: 50  SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVG 109
           +V  +DLVIEA+ EN+D+K +LF  +D IAP  AILASNTSSLSITE+A+ T R ++F+G
Sbjct: 76  AVD-ADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAATKRPERFIG 134

Query: 110 LHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT 155
           LHFFNP P+M L+EV+R   TS  T   V    K IGKT +V KD 
Sbjct: 135 LHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  180 bits (460), Expect = 1e-57
 Identities = 76/151 (50%), Positives = 103/151 (68%), Gaps = 4/151 (2%)

Query: 9   EEGEKLIDSTLSR-IKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
           + G   I  +L R +K     E +K  +  L+RI G++ ++D +  +DLVIEA  ENMD+
Sbjct: 40  DRGLATITKSLDRLVKKGKMTEADK--EAALARITGTTDLDD-LKDADLVIEAATENMDL 96

Query: 68  KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
           K K+F  +D+IA   AILA+NTSSLSITE+A+ T R DK +G+HFFNPVP+MKL+E+IR 
Sbjct: 97  KKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRG 156

Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
             TSDAT+ AV    K IGKT +  K+ PGF
Sbjct: 157 LATSDATHEAVEALAKKIGKTPVEVKNAPGF 187

Length = 282

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  173 bits (440), Expect = 1e-54
 Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 8/153 (5%)

Query: 9   EEGEKLIDSTLSRI--KGS-SKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENM 65
             G   I S+L+R+  KG  S+EE     D TL RI+ ++ +E+ +  +D +IEAIVE+ 
Sbjct: 41  SRGLDSISSSLARLVKKGKMSQEEA----DATLGRIRCTTNLEE-LRDADFIIEAIVESE 95

Query: 66  DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVI 125
           D+K KLF+ +D+I   SAILASNTSS+SIT +AS T R  + +G+HF NP P+MKL+E+I
Sbjct: 96  DLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEII 155

Query: 126 RTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           R  DTSD  ++A     +  GKT +  +D PGF
Sbjct: 156 RGADTSDEVFDATKALAERFGKTVVCSQDYPGF 188

Length = 295

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  173 bits (441), Expect = 2e-54
 Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 2/150 (1%)

Query: 9   EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
           E     I+  L ++    K   E+  D  L+RI  ++ +   +  +DLVIEA+VE++++K
Sbjct: 40  ERALAYIEKNLEKLVEKGKLTEEEA-DAALARITPTTDLAA-LKDADLVIEAVVEDLELK 97

Query: 69  HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
            ++F  ++ +A   AILASNTSSLSITE+A    R ++F+GLHFFNPVP+M L+EVIR  
Sbjct: 98  KQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGE 157

Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
            TSD T   V E+ K IGKT +V KD PGF
Sbjct: 158 KTSDETVERVVEFAKKIGKTPVVVKDVPGF 187

Length = 307

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  158 bits (403), Expect = 5e-47
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 13/169 (7%)

Query: 1   VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVED 49
           VAAQAG+                  I + L+++    K   E+  D  L+R++    + D
Sbjct: 25  VAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQA-DAALARLRPVEALAD 83

Query: 50  SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVG 109
            ++  DLV+EAIVE +D+K  LF  ++ I     ILA+NTSSLSIT IA+     ++  G
Sbjct: 84  -LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAG 142

Query: 110 LHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           LHFFNPVP+MKL+EV+    T  A  +A+    ++ GKT +  KDTPGF
Sbjct: 143 LHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF 191

Length = 507

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  145 bits (368), Expect = 1e-43
 Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 11/168 (6%)

Query: 1   VAAQAGNQ----EEGEKLIDSTLSRIKG------SSKEEGEKLIDLTLSRIKGSSKVEDS 50
           V A AG      +     +++ L+ I G      +  +  E+     L+RI  ++ +ED 
Sbjct: 22  VCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80

Query: 51  VSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGL 110
           ++  DLVIEA  E+  +K K+F  +  +    AILA+NTSS+SIT +AS T+R ++F+G+
Sbjct: 81  LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGI 140

Query: 111 HFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           HF NPVP+MKL+E+IR   T +AT+ A  E+   +GKT  V +D P F
Sbjct: 141 HFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFPAF 188

Length = 292

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  134 bits (339), Expect = 2e-39
 Identities = 57/152 (37%), Positives = 91/152 (59%), Gaps = 5/152 (3%)

Query: 8   QEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
           Q+E   + +  ++R K +            L+R+  S  ++ +V+ +DLVIEA+ E +++
Sbjct: 41  QQEIASIFEQGVARGKLTEAARQA-----ALARLSYSLDLKAAVADADLVIEAVPEKLEL 95

Query: 68  KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
           K  +F + D  APA   +A+NTS++S TEIAS T R ++ + +HFFNPV  MKL+E+IR 
Sbjct: 96  KKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRG 155

Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
            +TSD T     E  + +GK T+V  + PGF 
Sbjct: 156 LETSDETVQVAKEVAEQMGKETVVVNEFPGFV 187

Length = 288

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  140 bits (355), Expect = 2e-39
 Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 10  EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
           E  KL++  + R     K +G K+    LS I+ +        + D+V+EA+VEN  +K 
Sbjct: 355 EAAKLLNKQVER----GKIDGAKM-AGVLSSIRPTLDYAG-FERVDVVVEAVVENPKVKA 408

Query: 70  KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
            +   V++      ILASNTS++SI+ +A    R + F G+HFFNPV  M L+EVIR   
Sbjct: 409 AVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468

Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           TSD T   V  +   +GKT IV  D PGF
Sbjct: 469 TSDETIATVVAYASKMGKTPIVVNDCPGF 497

Length = 715

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  129 bits (327), Expect = 1e-37
 Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 17/172 (9%)

Query: 1   VAAQAGNQ----EEGEKLIDSTLSRI-----KGSSK---EEGEKLIDLTLSRIKGSSKVE 48
           V A+AG      E  E+L  +  +RI     +  S+    E E+  D  L+R++ ++ + 
Sbjct: 23  VCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERER--DAALARLRFTTDLG 80

Query: 49  DSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSSLSITEIASVTNRKDKF 107
           D  +   LVIEA+VE+  +K ++F  +DK+     A+LASNTSS+ I ++A+ T R  + 
Sbjct: 81  D-FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRV 139

Query: 108 VGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSI-GKTTIVCKDTPGF 158
           +GLHFFNPVP++ L+E++ T  TS+AT     E+   + GK  +  +D  GF
Sbjct: 140 LGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF 191

Length = 286

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  128 bits (322), Expect = 5e-37
 Identities = 55/128 (42%), Positives = 82/128 (64%), Gaps = 1/128 (0%)

Query: 31  EKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS 90
           E      ++RI+ S+  E S+S +D ++EA+ E +D+K K+F  +++      I+ASNTS
Sbjct: 64  EDEAKAIMARIRTSTSYE-SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 91  SLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150
            + I EIA+   RKD+F+G+H+FNP P+MKL+EV+R   TS+ T+N   E  K IGK  I
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 151 VCKDTPGF 158
              D PGF
Sbjct: 183 EVADVPGF 190

Length = 291

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  114 bits (287), Expect = 1e-31
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 37  TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE 96
            + RI+  + +  +VS +DLVIEA+ E +++K  +F  +D +     I A+NTS L IT 
Sbjct: 63  GMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA 122

Query: 97  IASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI-VCKDT 155
           IA    R ++FVG HFF P  ++ L+EV+R + TS  T        +SIGK  + V KD 
Sbjct: 123 IAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI 182

Query: 156 PGF 158
           PGF
Sbjct: 183 PGF 185

Length = 311

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  114 bits (287), Expect = 2e-30
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 13/169 (7%)

Query: 1   VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVED 49
           VAA AG+Q                 I++ L+ +    K   E+  + TL R+   + +  
Sbjct: 23  VAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEEC-ERTLKRLIPVTDLH- 80

Query: 50  SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVG 109
           +++ + LVIEAIVEN+++K  LF  ++++ PA  I+ASNTSSLSIT IA+   R ++  G
Sbjct: 81  ALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAG 140

Query: 110 LHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           LHFFNP P+M L+EV+    T+      + E   + GK  + C  TPGF
Sbjct: 141 LHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF 189

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  113 bits (285), Expect = 7e-30
 Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 10  EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
           E  KL++  + R     +    K+  + L+ I  +          D+V+EA+VEN  +K 
Sbjct: 355 EAAKLLNKQVER----GRITPAKMAGV-LNGITPTLSYAG-FDNVDIVVEAVVENPKVKA 408

Query: 70  KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
            +   V++     AILASNTS++SI+ +A    R + F G+HFFNPV  M L+EVIR   
Sbjct: 409 AVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468

Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           +SD T   V  +   +GKT IV  D PGF
Sbjct: 469 SSDETIATVVAYASKMGKTPIVVNDCPGF 497

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  111 bits (279), Expect = 4e-29
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 35  DLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI 94
           D  ++ I G++        +D+VIEA+ E++ +K ++   V++      I ASNTSSL I
Sbjct: 372 DKQMALISGTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPI 430

Query: 95  TEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD 154
            +IA+   R ++ +GLH+F+PV  M L+EVI    TS  T        K  GKT IV +D
Sbjct: 431 GQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRD 490

Query: 155 TPGF 158
             GF
Sbjct: 491 GAGF 494

Length = 708

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  105 bits (265), Expect = 2e-28
 Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 5/148 (3%)

Query: 12  EKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKL 71
            KL D  +  ++ + +       +  L+RI  ++ + ++V  +DLVIEA+ E+ +IK   
Sbjct: 47  AKLADRYVRDLEATKEAP----AEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDF 102

Query: 72  FTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTS 131
           +  + K+AP   I A+N+S+L  ++ A  T R +KF+ LHF N +      E++    T 
Sbjct: 103 YEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTD 162

Query: 132 DATYNAVTEWGKSIGKTTIVC-KDTPGF 158
              ++ V  + K+IG   IV  K+ PG+
Sbjct: 163 PEVFDTVVAFAKAIGMVPIVLKKEQPGY 190

Length = 287

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  105 bits (264), Expect = 4e-27
 Identities = 47/106 (44%), Positives = 71/106 (66%)

Query: 53  QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHF 112
            +D+VIEA+ E++ +KHK+   V+ + P   I+ASNTS+L I +IA+V++R +K +G+H+
Sbjct: 414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHY 473

Query: 113 FNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           F+PV  M+LLE+I  + TS  T  +    G   GK  IV KD PGF
Sbjct: 474 FSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF 519

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 96.4 bits (240), Expect = 6e-24
 Identities = 44/108 (40%), Positives = 63/108 (58%)

Query: 51  VSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGL 110
               D+VIEA+ E++ +KH++   +++   A  I ASNTSSL I +IA+  +R +  +GL
Sbjct: 382 FKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGL 441

Query: 111 HFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           H+F+PV  M L+EVI    TS+ T        K  GKT IV  D  GF
Sbjct: 442 HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGF 489

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 2/126 (1%)

Query: 35  DLTLSRIK--GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL 92
           D  L+RI         D+++ +DLV EA+ E +D K +    + +   A AI+AS TS+ 
Sbjct: 59  DAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTF 118

Query: 93  SITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152
            +T++       ++F+  H+ NP  +M L+EV  ++ T  A  + +    + IGK  +VC
Sbjct: 119 LVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVC 178

Query: 153 KDTPGF 158
             +PG+
Sbjct: 179 GPSPGY 184

Length = 314

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 25/107 (23%), Positives = 55/107 (51%)

Query: 40  RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIAS 99
           R+   + + ++V+ +D + E++ E +D+K ++   +D  A   A++ S+TS    +++  
Sbjct: 67  RLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE 126

Query: 100 VTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIG 146
                ++    H +NPV ++ L+E++    TS  T     E  + IG
Sbjct: 127 GMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIG 173

Length = 495

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 3/126 (2%)

Query: 35  DLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI 94
           D  L+RI+ +  + D+V+ +D V E+  EN+++K  LF  +D +AP  AILAS+TS+L  
Sbjct: 64  DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA 123

Query: 95  TEIA-SVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC- 152
           +     +  R+   V  H  NP  ++ ++EV+    T+ AT        ++ G++ +   
Sbjct: 124 SAFTEHLAGRERCLVA-HPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182

Query: 153 KDTPGF 158
           ++  GF
Sbjct: 183 REIDGF 188

Length = 308

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 39  SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI- 97
           +R++  + +E  V+ +D + E+  E   +K +L   + + A   AI+AS+TS L  T+  
Sbjct: 69  ARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFY 128

Query: 98  ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI-VCKDTP 156
           A  T+ +   VG H FNPV ++ L+EV+    T+    +A     +++G   + V K+ P
Sbjct: 129 ARATHPERCVVG-HPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVP 187

Query: 157 GF 158
           GF
Sbjct: 188 GF 189

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
KOG2304|consensus	298		100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG2305|consensus	313		100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
KOG1683|consensus	380		99.97
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.97
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.96
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.94
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.74
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.42
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.16
PRK07417	279	arogenate dehydrogenase; Reviewed	98.99
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.65
PRK06545	359	prephenate dehydrogenase; Validated	98.63
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.61
PLN02688	266	pyrroline-5-carboxylate reductase	98.53
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.52
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.51
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	98.5
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.4
PTZ00117	319	malate dehydrogenase; Provisional	98.38
PRK08655	437	prephenate dehydrogenase; Provisional	98.37
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.34
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.31
PRK06223	307	malate dehydrogenase; Reviewed	98.04
PLN02256	304	arogenate dehydrogenase	98.02
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.85
PRK08507	275	prephenate dehydrogenase; Validated	97.74
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.72
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.66
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.61
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.45
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.2
PRK08818	370	prephenate dehydrogenase; Provisional	97.12
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.11
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.05
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.75
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.72
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.71
PLN02712	667	arogenate dehydrogenase	96.68
PRK07680	273	late competence protein ComER; Validated	96.62
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.56
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	96.54
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.5
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.42
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.19
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.91
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.88
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.64
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.47
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.4
PLN02712	667	arogenate dehydrogenase	95.29
PTZ00431	260	pyrroline carboxylate reductase; Provisional	95.03
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.01
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	95.0
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.21
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	93.88
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.6
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	93.49
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	93.42
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.41
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	93.26
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.11
PRK06444	197	prephenate dehydrogenase; Provisional	92.98
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	91.88
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	91.83
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	91.79
PRK15059	292	tartronate semialdehyde reductase; Provisional	90.66
PRK15076	431	alpha-galactosidase; Provisional	90.34
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	90.18
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	89.59
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.56
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	88.37
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	88.2
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	87.49
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	87.22
PLN02353	473	probable UDP-glucose 6-dehydrogenase	86.57
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	85.48
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	85.34
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	85.16
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	84.94
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	84.7
PRK12480	330	D-lactate dehydrogenase; Provisional	84.44
PLN00135	309	malate dehydrogenase	84.43
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	84.36
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	82.69
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	82.26
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	82.18
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	80.76

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=3.9e-49  Score=326.90  Aligned_cols=157  Identities=46%  Similarity=0.730  Sum_probs=148.2

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ||.+||+           ++++..|.+.++++++++.....+ .+..+++|++++++. ++++||||||||+||+++|++
T Consensus        22 ~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~-~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~   99 (307)
T COG1250          22 FALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEE-ADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQ   99 (307)
T ss_pred             HhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHhhccccCchh-HhccCCEEEEeccccHHHHHH
Confidence            6777888           889999999999998886655443 789999999999995 899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+++++|+||||||||+|||++|++.++||+||+|+||||||+.|||||||+|.+|++++++++.+|++++||+|+
T Consensus       100 vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~v  179 (307)
T COG1250         100 VFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPV  179 (307)
T ss_pred             HHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+||||.
T Consensus       180 v~~D~pGFi~  189 (307)
T COG1250         180 VVKDVPGFIV  189 (307)
T ss_pred             eecCCCceeh
Confidence            8899999984

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=1.4e-46  Score=291.31  Aligned_cols=152  Identities=43%  Similarity=0.662  Sum_probs=130.1

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ||++|++           ++++++|++.++.+++++.....+ .+..+++|++++|+++ +.+|||||||++|++++|++
T Consensus        18 ~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~dl~~-~~~adlViEai~E~l~~K~~   95 (180)
T PF02737_consen   18 FARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEE-ADAALARISFTTDLEE-AVDADLVIEAIPEDLELKQE   95 (180)
T ss_dssp             HHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHH-HHHHHHTEEEESSGGG-GCTESEEEE-S-SSHHHHHH
T ss_pred             HHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhh-hhhhhhhcccccCHHH-HhhhheehhhccccHHHHHH
Confidence            6888999           788999999999988876655443 8889999999999965 55999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+++|+|+|||+||||++++++|++.+.+|+|++|+|||||++.+|+||||+|++|++++++++.+|++++||.||
T Consensus        96 ~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv  175 (180)
T PF02737_consen   96 LFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPV  175 (180)
T ss_dssp             HHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEE
T ss_pred             HHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCc
Q psy3942         151 VCKDT  155 (160)
Q Consensus       151 ~v~d~  155 (160)
                      +|+|+
T Consensus       176 ~v~D~  180 (180)
T PF02737_consen  176 VVKDT  180 (180)
T ss_dssp             EEES-
T ss_pred             EecCC
Confidence            99985

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.2e-44  Score=328.98  Aligned_cols=158  Identities=35%  Similarity=0.516  Sum_probs=149.1

Q ss_pred             ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      +||.+|++           ++++++|++.++..++++..+..+ .+..+++|++++++ +++++||||||||+|++++|+
T Consensus       331 ~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEav~E~l~~K~  408 (714)
T TIGR02437       331 QSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAK-MAGVLNGITPTLSY-AGFDNVDIVVEAVVENPKVKA  408 (714)
T ss_pred             HHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEEeCCH-HHhcCCCEEEEcCcccHHHHH
Confidence            37889999           788999999999998886655443 78889999999999 579999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++|+++|+|+|||+||||++|+++|++.++||+||+|+|||||++.|||||||+|+.|++++++++.+|++++||+|
T Consensus       409 ~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~p  488 (714)
T TIGR02437       409 AVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTP  488 (714)
T ss_pred             HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcCcccC
Q psy3942         150 IVCKDTPGFTP  160 (160)
Q Consensus       150 v~v~d~pGfi~  160 (160)
                      |+|+|+||||.
T Consensus       489 v~v~d~pGfi~  499 (714)
T TIGR02437       489 IVVNDCPGFFV  499 (714)
T ss_pred             EEeCCcccchH
Confidence            99999999984

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.8e-44  Score=326.67  Aligned_cols=158  Identities=37%  Similarity=0.545  Sum_probs=148.8

Q ss_pred             ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      +||++||+           ++++.+|++.+++.++++..+..+ .++.+++|++++|+ +++++||||||||+|++++|+
T Consensus       331 ~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEav~E~l~~K~  408 (715)
T PRK11730        331 QSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAK-MAGVLSSIRPTLDY-AGFERVDVVVEAVVENPKVKA  408 (715)
T ss_pred             HHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEEeCCH-HHhcCCCEEEecccCcHHHHH
Confidence            37889998           788899999999998886655443 78899999999999 579999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++|+++|+|+|||+||||++|+++|++.+.+|+||+|+|||||++.|||||||+|+.|++++++++.+|++++||+|
T Consensus       409 ~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~p  488 (715)
T PRK11730        409 AVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTP  488 (715)
T ss_pred             HHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcCcccC
Q psy3942         150 IVCKDTPGFTP  160 (160)
Q Consensus       150 v~v~d~pGfi~  160 (160)
                      |+|+|+||||+
T Consensus       489 v~v~d~pGfv~  499 (715)
T PRK11730        489 IVVNDCPGFFV  499 (715)
T ss_pred             EEecCcCchhH
Confidence            99999999984

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.7e-44  Score=299.07  Aligned_cols=154  Identities=23%  Similarity=0.323  Sum_probs=141.4

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ||.+||+           ++++.+|.+.++.+.+.+..     .....++|++++++++++++||+||||+||++++|++
T Consensus        26 ~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~  100 (321)
T PRK07066         26 ALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLA-----PGASPARLRFVATIEACVADADFIQESAPEREALKLE  100 (321)
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----hhhHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHH
Confidence            6888999           46677888888877765422     2345689999999988899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.|++++||+||||++++++|++.+++|+||+|+|||||||.|||||||+|++|++++++++.+|++++||+||
T Consensus       101 lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV  180 (321)
T PRK07066        101 LHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL  180 (321)
T ss_pred             HHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-cCcCcccC
Q psy3942         151 VC-KDTPGFTP  160 (160)
Q Consensus       151 ~v-~d~pGfi~  160 (160)
                      ++ +|+||||+
T Consensus       181 ~v~kd~pGFi~  191 (321)
T PRK07066        181 HVRKEVPGFIA  191 (321)
T ss_pred             ecCCCCccHHH
Confidence            99 79999984

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=6.1e-44  Score=325.11  Aligned_cols=157  Identities=34%  Similarity=0.572  Sum_probs=148.6

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ||.+|++           +++.++|++.+++.++++..+..+ .++.+++|++++|+ +++++||||||||+|++++|++
T Consensus       354 ~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEAv~E~l~~K~~  431 (737)
T TIGR02441       354 SVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLE-RDSILSNLTPTLDY-SGFKNADMVIEAVFEDLSLKHK  431 (737)
T ss_pred             HHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEEeCCH-HHhccCCeehhhccccHHHHHH
Confidence            6788999           788999999999998886655443 78899999999999 5899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+++|+|+|||+||||+|++++|++.++||+||+|+|||||++.|||||||+|+.|++++++++.+|++++||+||
T Consensus       432 vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv  511 (737)
T TIGR02441       432 VIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVI  511 (737)
T ss_pred             HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +|+|+||||.
T Consensus       512 ~v~d~pGFi~  521 (737)
T TIGR02441       512 VVKDGPGFYT  521 (737)
T ss_pred             EECCcCCchH
Confidence            9999999984

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=2.2e-43  Score=320.06  Aligned_cols=157  Identities=33%  Similarity=0.486  Sum_probs=146.8

Q ss_pred             hh-hCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           2 AA-QAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         2 ~a-~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      || .+|++           ++++.++.+.+++.++++.....+ .+..+++|++++++ +++++||||||||+|++++|+
T Consensus       323 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~adlViEav~E~l~~K~  400 (699)
T TIGR02440       323 TATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAE-RDNQMALITGTTDY-RGFKDVDIVIEAVFEDLALKH  400 (699)
T ss_pred             HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHcCeEEeCCh-HHhccCCEEEEeccccHHHHH
Confidence            56 48998           788889999999988876554433 77889999999999 589999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++|+++|+++|||+||||++|+++|++.+.+|+||+|+||||||+.|||||||+|+.|++++++++.+|++++||+|
T Consensus       401 ~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~p  480 (699)
T TIGR02440       401 QMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTP  480 (699)
T ss_pred             HHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcCcccC
Q psy3942         150 IVCKDTPGFTP  160 (160)
Q Consensus       150 v~v~d~pGfi~  160 (160)
                      |+|+|+||||+
T Consensus       481 v~v~d~pGfi~  491 (699)
T TIGR02440       481 IVVADKAGFYV  491 (699)
T ss_pred             EEEccccchHH
Confidence            99999999984

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=8.6e-43  Score=316.64  Aligned_cols=157  Identities=32%  Similarity=0.479  Sum_probs=147.2

Q ss_pred             hh-hCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           2 AA-QAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         2 ~a-~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      || .+|++           ++++.++++.++.+++++.....+ .++.+++|++++++ +++++||||||||+|++++|+
T Consensus       328 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEav~E~~~~K~  405 (708)
T PRK11154        328 TATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSE-RDKQMALISGTTDY-RGFKHADVVIEAVFEDLALKQ  405 (708)
T ss_pred             HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhcEEEeCCh-HHhccCCEEeecccccHHHHH
Confidence            56 77998           778889999999998886654433 77889999999999 589999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++|+++|+|+|||+||||++|+++|++.+.+|+||+|+|||||++.|||||||+|++|++++++.+.+|++++||.|
T Consensus       406 ~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p  485 (708)
T PRK11154        406 QMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP  485 (708)
T ss_pred             HHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcCcccC
Q psy3942         150 IVCKDTPGFTP  160 (160)
Q Consensus       150 v~v~d~pGfi~  160 (160)
                      |+++|+||||.
T Consensus       486 v~v~d~pGfi~  496 (708)
T PRK11154        486 IVVRDGAGFYV  496 (708)
T ss_pred             EEEeccCcHHH
Confidence            99999999983

>KOG2304|consensus

Probab=100.00  E-value=3.2e-44  Score=284.54  Aligned_cols=159  Identities=59%  Similarity=0.890  Sum_probs=149.1

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCc----hhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSK----EEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMD   66 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~----~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~   66 (160)
                      +|.+||+           .+|++.|.+++.+.+++..    ...++.++..++||..++++.++++++|+|||||.||++
T Consensus        30 ~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadliiEAivEn~d  109 (298)
T KOG2304|consen   30 AATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLIIEAIVENLD  109 (298)
T ss_pred             HHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHH
Confidence            5778888           8899999999999887622    223456788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcC
Q psy3942          67 IKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIG  146 (160)
Q Consensus        67 ~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lg  146 (160)
                      +|+++|++|+..|+++|||+|||||+.+++|+..+++|.||.|+|||||++.|.|||||+++.||++|......|++.+|
T Consensus       110 iK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~g  189 (298)
T KOG2304|consen  110 IKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVG  189 (298)
T ss_pred             HHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCcCcccC
Q psy3942         147 KTTIVCKDTPGFTP  160 (160)
Q Consensus       147 k~pv~v~d~pGfi~  160 (160)
                      |+||-++|.||||.
T Consensus       190 KttVackDtpGFIV  203 (298)
T KOG2304|consen  190 KTTVACKDTPGFIV  203 (298)
T ss_pred             CCceeecCCCchhh
Confidence            99999999999984

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3e-41  Score=278.05  Aligned_cols=157  Identities=36%  Similarity=0.595  Sum_probs=147.0

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      +|.+||+           ++++++|++.++++++++..+..+ .++.+++|++++++ +++++||+||||++|++++|++
T Consensus        24 ~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~  101 (286)
T PRK07819         24 CARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERE-RDAALARLRFTTDL-GDFADRQLVIEAVVEDEAVKTE  101 (286)
T ss_pred             HHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhh-HHHHHhCeEeeCCH-HHhCCCCEEEEecccCHHHHHH
Confidence            6788998           778999999999998886655443 77889999999999 5799999999999999999999


Q ss_pred             HHHHHhhhC-CCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHH-HcCCe
Q psy3942          71 LFTSVDKIA-PASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGK-SIGKT  148 (160)
Q Consensus        71 v~~~l~~~~-~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~-~lgk~  148 (160)
                      +|++++++| +|++||+||||++++++++..+.+|+|++|+|||||+|.+|+|||+++.+|++++++++..|++ .+||+
T Consensus       102 l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~  181 (286)
T PRK07819        102 IFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQ  181 (286)
T ss_pred             HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999998 59999


Q ss_pred             EEEecCcCcccC
Q psy3942         149 TIVCKDTPGFTP  160 (160)
Q Consensus       149 pv~v~d~pGfi~  160 (160)
                      |++++|.||||+
T Consensus       182 pv~v~d~pGfi~  193 (286)
T PRK07819        182 VVRAQDRSGFVV  193 (286)
T ss_pred             ceEecCCCChHH
Confidence            999999999983

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.2e-41  Score=280.06  Aligned_cols=149  Identities=28%  Similarity=0.475  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCC--hhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeec
Q psy3942          11 GEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSK--VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN   88 (160)
Q Consensus        11 a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasn   88 (160)
                      ++++|++.++.+++++..+..+ .++.+++|+++++  +.+++++||+|||||+|++++|+++|++|++.|+|+|||+||
T Consensus        36 ~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn  114 (314)
T PRK08269         36 ARAEIERTLAALVALGRIDAAQ-ADAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIAST  114 (314)
T ss_pred             HHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence            8888999999988887655443 7789999999875  446789999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942          89 TSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP  160 (160)
Q Consensus        89 TS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~  160 (160)
                      ||++++++|++.++||+|++|+||||||+.||||||++|+.|++++++++..|++.+||.|++++|.|||+.
T Consensus       115 tS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~  186 (314)
T PRK08269        115 TSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIV  186 (314)
T ss_pred             cccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999974

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=1.2e-38  Score=280.08  Aligned_cols=157  Identities=39%  Similarity=0.601  Sum_probs=146.9

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++++||+           ++++.+|++.++.+++++.....+ .++.++||+++++++ ++++||+||||++|++++|+.
T Consensus        24 la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~-~~~~~~~i~~~~~~~-~l~~aDlVIEav~E~~~vK~~  101 (503)
T TIGR02279        24 AASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEE-CERTLKRLIPVTDLH-ALADAGLVIEAIVENLEVKKA  101 (503)
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHhccEEeCCHH-HhCCCCEEEEcCcCcHHHHHH
Confidence            6788998           677889999999998886654433 788999999999994 789999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+..|++++||+||||++++++|++.+.+|+|++|+|||||++.|+|||||+|+.|++++++++..|++.+||.||
T Consensus       102 vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv  181 (503)
T TIGR02279       102 LFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPV  181 (503)
T ss_pred             HHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+||||.
T Consensus       182 ~v~d~pGfi~  191 (503)
T TIGR02279       182 HCHSTPGFIV  191 (503)
T ss_pred             EeCCCCCcHH
Confidence            9999999973

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.1e-38  Score=276.43  Aligned_cols=157  Identities=41%  Similarity=0.636  Sum_probs=147.5

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++++||+           +++.++|++.++++++++..+..+ .++.++||+++++++ ++++||+||||++|++++|+.
T Consensus        26 la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~-~~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~vK~~  103 (507)
T PRK08268         26 AAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQ-ADAALARLRPVEALA-DLADCDLVVEAIVERLDVKQA  103 (507)
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEEeCCHH-HhCCCCEEEEcCcccHHHHHH
Confidence            6788998           788889999999998887655443 888999999999995 689999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+.+|++++||+||||++++++|++.+.+|+|++|+|||||++.|+|||||+|.+|++++++++..|++.+||+|+
T Consensus       104 vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv  183 (507)
T PRK08268        104 LFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV  183 (507)
T ss_pred             HHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+||||.
T Consensus       184 ~v~d~pGfi~  193 (507)
T PRK08268        184 RAKDTPGFIV  193 (507)
T ss_pred             EecCCCChHH
Confidence            9999999973

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-35  Score=243.43  Aligned_cols=159  Identities=30%  Similarity=0.469  Sum_probs=139.9

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+|++           +++.+++++.++..............+..+++|++++|+++++++||+||||+||++++|++
T Consensus        22 la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~  101 (287)
T PRK08293         22 TAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGD  101 (287)
T ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHH
Confidence            5677887           45666666666666655433322114567789999999977899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|+++++.+++++||+||||+++++++++.+.+|+|++|+|||||++.+|+|||++++.|++++++++.+|++.+||+||
T Consensus       102 ~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv  181 (287)
T PRK08293        102 FYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPI  181 (287)
T ss_pred             HHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-cCcCcccC
Q psy3942         151 VC-KDTPGFTP  160 (160)
Q Consensus       151 ~v-~d~pGfi~  160 (160)
                      ++ +|.||||+
T Consensus       182 ~v~~d~pgfi~  192 (287)
T PRK08293        182 VLKKEQPGYIL  192 (287)
T ss_pred             EecCCCCCHhH
Confidence            99 79999984

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.9e-34  Score=236.17  Aligned_cols=157  Identities=48%  Similarity=0.732  Sum_probs=143.2

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+|++           ++++++|++.++.+.+.+.....+ .+..+.+++++++++ ++++||+||||++|++++|++
T Consensus        22 la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~l~~~~~~~-~~~~aDlVi~av~e~~~~k~~   99 (282)
T PRK05808         22 CAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEAD-KEAALARITGTTDLD-DLKDADLVIEAATENMDLKKK   99 (282)
T ss_pred             HHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEEeCCHH-HhccCCeeeecccccHHHHHH
Confidence            4566777           577888999999988876443332 667788999999995 689999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.++++++|+||||++++++|++.+++|+|++|+||++|++.+++|||++|..|++++++++..|++.+||.|+
T Consensus       100 ~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv  179 (282)
T PRK05808        100 IFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPV  179 (282)
T ss_pred             HHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+||||.
T Consensus       180 ~~~d~~g~i~  189 (282)
T PRK05808        180 EVKNAPGFVV  189 (282)
T ss_pred             EecCccChHH
Confidence            9999999973

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.3e-34  Score=234.59  Aligned_cols=157  Identities=38%  Similarity=0.659  Sum_probs=136.8

Q ss_pred             hhhCCcc-----------HHHHHHHHH---HHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDS---TLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI   67 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~---~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~   67 (160)
                      ++.+|++           +++++++++   .++..++.+..... ..++.++++++++++ +++++||+||||++|++++
T Consensus        22 la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~   99 (291)
T PRK06035         22 FARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSED-EAKAIMARIRTSTSY-ESLSDADFIVEAVPEKLDL   99 (291)
T ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHH-HHHHHHhCcEeeCCH-HHhCCCCEEEEcCcCcHHH
Confidence            5677887           333444554   24445544433222 266778999999999 5899999999999999999


Q ss_pred             HHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy3942          68 KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGK  147 (160)
Q Consensus        68 K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk  147 (160)
                      |+++|++|+..+++++||+||||++++++|++.+.+|+|++|+|||+|++.+++||+++|+.|++++++++..|++.+||
T Consensus       100 k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk  179 (291)
T PRK06035        100 KRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGK  179 (291)
T ss_pred             HHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCcCcccC
Q psy3942         148 TTIVCKDTPGFTP  160 (160)
Q Consensus       148 ~pv~v~d~pGfi~  160 (160)
                      .|++++|.|||++
T Consensus       180 ~~v~v~d~pgfv~  192 (291)
T PRK06035        180 IPIEVADVPGFFT  192 (291)
T ss_pred             eEEEeCCCCCeeH
Confidence            9999999999984

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.4e-33  Score=228.82  Aligned_cols=158  Identities=38%  Similarity=0.558  Sum_probs=137.6

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+||+           +++.+++...++..++.+..... ..++.+.++++++++++++++||+||||+||++++|+.
T Consensus        20 la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~   98 (288)
T PRK09260         20 FAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA-ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKA   98 (288)
T ss_pred             HHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHH
Confidence            5667887           33444444444444444333322 25678899999999977899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|.+|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++|+|++.|++|++++++++..|++.+||.|+
T Consensus        99 ~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v  178 (288)
T PRK09260         99 VFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETV  178 (288)
T ss_pred             HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+||||+
T Consensus       179 ~v~d~~Gf~~  188 (288)
T PRK09260        179 VVNEFPGFVT  188 (288)
T ss_pred             EecCcccHHH
Confidence            9999999984

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=9.4e-33  Score=227.09  Aligned_cols=157  Identities=41%  Similarity=0.634  Sum_probs=140.0

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+|++           +++.+++.+.++...+.+.....+ .+..+.+++++++++ ++++||+||||+||+.++|+.
T Consensus        23 la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~  100 (292)
T PRK07530         23 CALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEA-RAAALARISTATDLE-DLADCDLVIEAATEDETVKRK  100 (292)
T ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHH
Confidence            5667887           455666777777766654433222 566788999999994 789999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.++++++|+||||++++++|++.+.+|+|++|+|||+|++.++++||+.|..|++++++++..|++.+||.|+
T Consensus       101 ~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v  180 (292)
T PRK07530        101 IFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT  180 (292)
T ss_pred             HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|.||||.
T Consensus       181 ~~~d~pg~i~  190 (292)
T PRK07530        181 VAEDFPAFIV  190 (292)
T ss_pred             EecCcCChHH
Confidence            9999999973

>KOG2305|consensus

Probab=100.00  E-value=8.5e-34  Score=225.52  Aligned_cols=159  Identities=23%  Similarity=0.360  Sum_probs=149.8

Q ss_pred             ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      .||.+||+           ..|.+.+++.|+++.+.+...++-.+++.+++|+.++++++.+++|-.++||+||++++|+
T Consensus        21 lFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk  100 (313)
T KOG2305|consen   21 LFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVPEDLNLKK  100 (313)
T ss_pred             HHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhchHhhHHHH
Confidence            38999999           7799999999999888755555555889999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++||+++.|.||++|+||++..+.+.+++.+.++++..|+.|||+.+||||+|++|+|+|+++++++++++++|..|
T Consensus       101 ~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~p  180 (313)
T KOG2305|consen  101 QLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEP  180 (313)
T ss_pred             HHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe-cCcCccc
Q psy3942         150 IVC-KDTPGFT  159 (160)
Q Consensus       150 v~v-~d~pGfi  159 (160)
                      |.. ++.-||.
T Consensus       181 V~l~rei~Gf~  191 (313)
T KOG2305|consen  181 VTLKREILGFA  191 (313)
T ss_pred             cccccccccce
Confidence            998 8999985

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=3e-32  Score=224.42  Aligned_cols=157  Identities=45%  Similarity=0.713  Sum_probs=142.9

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      |+.+|++           ++++++|++.++.+++.+.....+ .++.++++++++++ +++++||+||||++|+.++|+.
T Consensus        23 l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-~~~~~aD~Vieav~e~~~~k~~  100 (295)
T PLN02545         23 AAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEE-ADATLGRIRCTTNL-EELRDADFIIEAIVESEDLKKK  100 (295)
T ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhceEeeCCH-HHhCCCCEEEEcCccCHHHHHH
Confidence            5667877           667788888888888775544332 56678899999999 4799999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++++..+++++||+||||+++++++++.+.+|.|++|+||+|||+.++++||+.|..|++++++++..|++.+||.|+
T Consensus       101 v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~  180 (295)
T PLN02545        101 LFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVV  180 (295)
T ss_pred             HHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|.||||+
T Consensus       181 ~~~d~~g~i~  190 (295)
T PLN02545        181 CSQDYPGFIV  190 (295)
T ss_pred             EecCcccHHH
Confidence            9999999973

>KOG1683|consensus

Probab=99.97  E-value=4.6e-33  Score=232.87  Aligned_cols=157  Identities=32%  Similarity=0.462  Sum_probs=144.8

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      |..+|++           ++++..+...+.+.+.++..++.+ .+..+.++..+.|+ ..++++|+|||+++||+++|++
T Consensus         9 ~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~-~~~~~~~L~~~~Dy-~~~~~~dmvieav~edl~Lk~~   86 (380)
T KOG1683|consen    9 FILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLE-REKTKSNLVETLDY-TGFANADMVIEAVFEDLELKHE   86 (380)
T ss_pred             HHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccc-hhhhhhhccccccc-ccccccceeccchhhhHHHHHH
Confidence            5567777           567888888888877776555444 77888999999999 5799999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+++|+|+||++||||+++++++++.+++|++++|+|||+|++.|+|+||+.+.+||..+++.+.......||.|+
T Consensus        87 l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~v  166 (380)
T KOG1683|consen   87 LFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPV  166 (380)
T ss_pred             HHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +|.++|||.+
T Consensus       167 vVg~c~gf~v  176 (380)
T KOG1683|consen  167 VVGNCCGFRV  176 (380)
T ss_pred             EeccCCceEE
Confidence            9999999963

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.97  E-value=4.7e-29  Score=206.91  Aligned_cols=158  Identities=27%  Similarity=0.413  Sum_probs=141.9

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+||+           +++..+++..++.+.+.+..+... .+..+.++++++++++++++||+|+||+||++++|+.
T Consensus        21 la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~-~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~   99 (308)
T PRK06129         21 FARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA-PDAVLARIRVTDSLADAVADADYVQESAPENLELKRA   99 (308)
T ss_pred             HHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhh-HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHH
Confidence            5667877           566777788888777765433222 6678889999999977889999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++++..++++++|+||||+++++++++.+.+|.|++|.|||||++.+|+||++++..|++++++++..|++.+||.|+
T Consensus       100 ~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v  179 (308)
T PRK06129        100 LFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPV  179 (308)
T ss_pred             HHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-cCcCcccC
Q psy3942         151 VC-KDTPGFTP  160 (160)
Q Consensus       151 ~v-~d~pGfi~  160 (160)
                      ++ ++.||||+
T Consensus       180 ~v~~~~~G~i~  190 (308)
T PRK06129        180 RLRREIDGFVL  190 (308)
T ss_pred             EecCCCccHHH
Confidence            99 79999973

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.96  E-value=1e-28  Score=216.84  Aligned_cols=124  Identities=22%  Similarity=0.379  Sum_probs=119.2

Q ss_pred             HhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCC
Q psy3942          37 TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPV  116 (160)
Q Consensus        37 ~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~  116 (160)
                      .++++++++++++++++||+||||+||++++|+.+|++|++.+++++||+||||++++++|++.+.+|+|+++.|||||+
T Consensus        64 ~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~  143 (495)
T PRK07531         64 PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPV  143 (495)
T ss_pred             hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCc
Confidence            34678999999778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCcccC
Q psy3942         117 PMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPGFTP  160 (160)
Q Consensus       117 ~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~  160 (160)
                      +.+||+|++.|+.|++++++++..|++.+||.|+++ ++.|||++
T Consensus       144 ~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~  188 (495)
T PRK07531        144 YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVG  188 (495)
T ss_pred             ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhH
Confidence            999999999999999999999999999999999999 79999984

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.94  E-value=1.4e-25  Score=185.62  Aligned_cols=125  Identities=38%  Similarity=0.649  Sum_probs=118.5

Q ss_pred             HHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCC
Q psy3942          36 LTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        36 ~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P  115 (160)
                      ..++++++++++++++++||+||+|+|++.+.|+++|++++..++++++|+||||+++++++++.+.++.|++|+||++|
T Consensus        62 ~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p  141 (311)
T PRK06130         62 AGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTP  141 (311)
T ss_pred             HHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCC
Confidence            35678889999976789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCcccC
Q psy3942         116 VPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPGFTP  160 (160)
Q Consensus       116 ~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~  160 (160)
                      ++.++++|+++++.|++++++.+..|++.+|+.|+++ +|.|||++
T Consensus       142 ~~~~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~  187 (311)
T PRK06130        142 ADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIA  187 (311)
T ss_pred             CccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHH
Confidence            9999999999999999999999999999999999999 69999963

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.74  E-value=4.3e-18  Score=150.25  Aligned_cols=84  Identities=20%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             hhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942          77 KIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP  156 (160)
Q Consensus        77 ~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~p  156 (160)
                      ..+++++++++++++.+.++++....+|+|++|+|||||++.||+|||++|++|++++++++.+|++++||+||+++|+|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~  415 (507)
T PRK08268        336 GPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSP  415 (507)
T ss_pred             ccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCc
Confidence            56789999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q psy3942         157 GFTP  160 (160)
Q Consensus       157 Gfi~  160 (160)
                      |||.
T Consensus       416 Gfi~  419 (507)
T PRK08268        416 GFVA  419 (507)
T ss_pred             cHHH
Confidence            9973

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.42  E-value=9.9e-15  Score=126.38  Aligned_cols=109  Identities=16%  Similarity=0.247  Sum_probs=98.7

Q ss_pred             cCceecCChhhhcCCCcEEEEecc----------CChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC--CCc
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV----------ENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR--KDK  106 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~----------E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~--p~r  106 (160)
                      .+|+.++|+.+++++||+||++++          |++++|+.+|++++..|++++++.+|+|...+++|+..+..  | +
T Consensus        60 ~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~  138 (423)
T cd05297          60 LKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-D  138 (423)
T ss_pred             eEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-C
Confidence            578889998789999999999999          57999999999999999999999999999999999999874  7 9


Q ss_pred             EEEeecCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         107 FVGLHFFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       107 ~ig~Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      .+++||+||+..+     +..+ ++.-+|+..+......+++.+|+.|
T Consensus       139 a~~i~~tNPv~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         139 AWLLNYANPMAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             CEEEEcCChHHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence            9999999999988     7887 6777777778888888999999854

linked to 3D####ucture

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.16  E-value=1.5e-10  Score=98.97  Aligned_cols=102  Identities=17%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCCCCCceEE
Q psy3942          46 KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPVPMMKLLE  123 (160)
Q Consensus        46 ~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVE  123 (160)
                      +.++++++||+||.|+|++.  ..++++++.. +++++||..++|.  .++.++.....  .+|+|.||++++....+.+
T Consensus       135 ~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~  209 (374)
T PRK11199        135 RAEDILADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAK  209 (374)
T ss_pred             hHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCC
Confidence            44556889999999999996  5889999999 8999999999884  66788877653  4799999999988777766


Q ss_pred             --EecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         124 --VIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       124 --vv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                        ++..+.|+++.++++..|++.+|+.|+.+
T Consensus       210 ~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~  240 (374)
T PRK11199        210 QVVVVCDGRQPEAYQWLLEQIQVWGARLHRI  240 (374)
T ss_pred             CEEEEcCCCCchHHHHHHHHHHHCCCEEEEC
Confidence              77788999999999999999999999887

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.99  E-value=3e-09  Score=87.24  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=86.3

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCC------
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP------  117 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~------  117 (160)
                      +++. ++++++|+||.|+|++...  ++++++...++++++| +++++++...+.....++.+++|+|++..+.      
T Consensus        49 ~~~~-~~~~~aDlVilavp~~~~~--~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~  124 (279)
T PRK07417         49 STDL-SLLKDCDLVILALPIGLLL--PPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEA  124 (279)
T ss_pred             cCCH-hHhcCCCEEEEcCCHHHHH--HHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHH
Confidence            4455 4689999999999987764  4789999988999888 7788888877776666667899999976543      


Q ss_pred             ------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         118 ------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       118 ------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                            ..+.+=+++++.++++.++.+..|++.+|+.|+.+.
T Consensus       125 a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~  166 (279)
T PRK07417        125 GQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTAD  166 (279)
T ss_pred             hhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                  234555889999999999999999999999998773

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.65  E-value=3.1e-07  Score=77.87  Aligned_cols=112  Identities=20%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHH----hcccCCCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI----ASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~l----a~~~~~p~r~ig~Hf~~P  115 (160)
                      .++++++..+++++||+||.|+|... ..++++..+...++++++|. ++|+++...+    ...+..+.+.+|+||++|
T Consensus        68 Gi~~asd~~eaa~~ADvVIlaVP~~~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p  145 (342)
T PRK12557         68 GVKVVSDDAEAAKHGEIHILFTPFGK-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHP  145 (342)
T ss_pred             CCEEeCCHHHHHhCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCC
Confidence            46677777677899999999999654 56788889999899998877 5666666644    355555667889999887


Q ss_pred             CCC----CceEEEecCCCC------CHHHHHHHHHHHHHcCCeEEEec
Q psy3942         116 VPM----MKLLEVIRTNDT------SDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       116 ~~~----~~lVEvv~~~~T------~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      ...    ..-++|+.|..|      +++.++++..+++.+|+.++++.
T Consensus       146 ~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~  193 (342)
T PRK12557        146 AAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP  193 (342)
T ss_pred             ccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence            653    223568877655      89999999999999999997764

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.63  E-value=3.3e-07  Score=77.88  Aligned_cols=107  Identities=13%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-CCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCCC---
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPVP---  117 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~~---  117 (160)
                      ++++++++++||+||.|+|.+  ...+++.++... .+++++|...+|.  -.+..+.....+..+++|.|++.-..   
T Consensus        51 ~~~~~~~~~~aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG  128 (359)
T PRK06545         51 AADLQRAAAEADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSG  128 (359)
T ss_pred             ccCHHHHhcCCCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhh
Confidence            456666789999999999996  578999999873 7888887643333  33445555556678999999754321   


Q ss_pred             ---------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         118 ---------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       118 ---------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                               .....=|+++..|+++.++.+.+|++.+|+.|+.+
T Consensus       129 ~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~  172 (359)
T PRK06545        129 VAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVL  172 (359)
T ss_pred             HHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence                     22223478889999999999999999999999887

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.61  E-value=6.9e-08  Score=79.98  Aligned_cols=92  Identities=14%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             cCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTNR  103 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~~  103 (160)
                      .+|+.++|+ +++++||+||+++              +||+++|++++++|++.++++. |+.||.+.+....+...++.
T Consensus        53 ~~I~~t~d~-~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~  131 (300)
T cd01339          53 TKVTGTNDY-EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGF  131 (300)
T ss_pred             eEEEEcCCH-HHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCC
Confidence            578888888 4799999999866              8999999999999999998888 68899999999999888876


Q ss_pred             -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                       |+||+|+                  .|..++...-..+++.+|..|
T Consensus       132 ~~~rviGl------------------gt~lds~r~~~~la~~l~v~~  160 (300)
T cd01339         132 PRNRVIGM------------------AGVLDSARFRYFIAEELGVSV  160 (300)
T ss_pred             CHHHEEEe------------------cchHHHHHHHHHHHHHhCCCc
Confidence             5799997                  344455444445556676644

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.53  E-value=1.4e-06  Score=70.56  Aligned_cols=110  Identities=14%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      .+..+++..+.++++|+||-|++  .+..++++..+...++++.+|.|.++++++.++....+.. +++.+++..|....
T Consensus        48 g~~~~~~~~e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~  124 (266)
T PLN02688         48 GVKTAASNTEVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVG  124 (266)
T ss_pred             CCEEeCChHHHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHh
Confidence            35666777667889999999994  5667888889988888899888999999999999877654 78888777776655


Q ss_pred             ceEE-EecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         120 KLLE-VIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       120 ~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      .-+- ++.+..++++..+.+..++..+|+ ++.+.
T Consensus       125 ~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~  158 (266)
T PLN02688        125 EAASVMSLGPAATADDRDLVATLFGAVGK-IWVVD  158 (266)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence            5555 456788899999999999999999 77663

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.52  E-value=8.9e-08  Score=80.46  Aligned_cols=72  Identities=19%  Similarity=0.338  Sum_probs=64.2

Q ss_pred             cCceecCChhhhcCCCcEEEEec-------------------cCChHHHHHHHHHHhhhCCC-CcEEeecCCCCCHHHHh
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI-------------------VENMDIKHKLFTSVDKIAPA-SAILASNTSSLSITEIA   98 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav-------------------~E~l~~K~~v~~~l~~~~~~-~~iiasnTS~l~i~~la   98 (160)
                      .+|+.++|+ ++++|||+||+++                   .+|.+++++++.++++.+++ -.|++||++++....+.
T Consensus        61 ~~I~~~~d~-~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~  139 (321)
T PTZ00082         61 SKVIGTNNY-EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQ  139 (321)
T ss_pred             eEEEECCCH-HHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHH
Confidence            478878899 5899999999955                   78999999999999999977 37889999999999999


Q ss_pred             cccCCC-CcEEEee
Q psy3942          99 SVTNRK-DKFVGLH  111 (160)
Q Consensus        99 ~~~~~p-~r~ig~H  111 (160)
                      ..+++| +|++|++
T Consensus       140 ~~sg~p~~rviGlg  153 (321)
T PTZ00082        140 EHSGLPKNKVCGMA  153 (321)
T ss_pred             HhcCCChhhEEEec
Confidence            888886 8999997

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.51  E-value=3.6e-07  Score=75.10  Aligned_cols=112  Identities=16%  Similarity=0.211  Sum_probs=82.0

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFN  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~  114 (160)
                      .+..++++++.+.++|+||.|+|+...+|.-++.  .+...++++++|. |+|+.++.   ++++.+..+    |+||++
T Consensus        45 g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d  119 (296)
T PRK11559         45 GAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLD  119 (296)
T ss_pred             CCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEE
Confidence            3456677777789999999999999988877654  3666678889887 55555554   666665432    678877


Q ss_pred             CCCC-------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec-CcCcc
Q psy3942         115 PVPM-------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK-DTPGF  158 (160)
Q Consensus       115 P~~~-------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~-d~pGf  158 (160)
                      +|-.       ...++++.|.  ++++++++..+++.+|+.++.+. ..+|+
T Consensus       120 ~pv~g~~~~a~~g~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~  169 (296)
T PRK11559        120 APVSGGEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGN  169 (296)
T ss_pred             cCCCCCHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHH
Confidence            6522       1446677764  68999999999999999999885 34444

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=98.50  E-value=3.8e-07  Score=74.91  Aligned_cols=107  Identities=16%  Similarity=0.298  Sum_probs=77.5

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCCCCC-
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFNPVP-  117 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~P~~-  117 (160)
                      .++..++++++|+||.|+|++..+|.-++..  +...++++++|. |+|+.++.   ++++.+..+    |+||+.+|- 
T Consensus        46 ~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~~----g~~~~~~pv~  120 (291)
T TIGR01505        46 AETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKEK----GIDYLDAPVS  120 (291)
T ss_pred             cCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCCEEecCCC
Confidence            4556568899999999999999988777643  556678888887 44455553   677666433    677777432 


Q ss_pred             ------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC-cCc
Q psy3942         118 ------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD-TPG  157 (160)
Q Consensus       118 ------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d-~pG  157 (160)
                            ....++++.|  .++++++++..+++.+|+.++.+.+ .+|
T Consensus       121 g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a  165 (291)
T TIGR01505       121 GGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDG  165 (291)
T ss_pred             CCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHH
Confidence                  2233567766  4689999999999999999999853 444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.40  E-value=5.1e-06  Score=67.21  Aligned_cols=109  Identities=9%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      .+..+++..+.+.++|+||-|++-.  .=+++++++....  +++|.|.++++++..+...+++..+++.+|+..|....
T Consensus        49 g~~~~~~~~~~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~  124 (267)
T PRK11880         49 GVRAATDNQEAAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVG  124 (267)
T ss_pred             CCeecCChHHHHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHc
Confidence            3556667756688999999999633  2345666666655  57888999999999999888777799999998887666


Q ss_pred             ceEE-EecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         120 KLLE-VIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       120 ~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      .-+. +..+..++++..+.+..+++.+|+.+ .+.
T Consensus       125 ~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~-~~~  158 (267)
T PRK11880        125 AGMTALTANALVSAEDRELVENLLSAFGKVV-WVD  158 (267)
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhCCeEE-EEC
Confidence            5554 56788899999999999999999844 443

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.38  E-value=4.8e-07  Score=75.92  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             cCceecCChhhhcCCCcEEEEec--cCCh------------HHHHHHHHHHhhhCCCC-cEEeecCCCCCHHHHhcccCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI--VENM------------DIKHKLFTSVDKIAPAS-AILASNTSSLSITEIASVTNR  103 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav--~E~l------------~~K~~v~~~l~~~~~~~-~iiasnTS~l~i~~la~~~~~  103 (160)
                      .+|+.+++++ +++|||+||+++  +++.            ++++++.+++++.||+. .|+.||.+.+....+....+.
T Consensus        60 ~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~  138 (319)
T PTZ00117         60 INILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGI  138 (319)
T ss_pred             eEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCC
Confidence            3677778995 899999999999  8877            99999999999999888 688899999998888888887


Q ss_pred             C-CcEEEee
Q psy3942         104 K-DKFVGLH  111 (160)
Q Consensus       104 p-~r~ig~H  111 (160)
                      | .|++|++
T Consensus       139 p~~rviG~g  147 (319)
T PTZ00117        139 PSNKICGMA  147 (319)
T ss_pred             CcccEEEec
Confidence            7 8999987

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.37  E-value=3.9e-06  Score=73.26  Aligned_cols=110  Identities=15%  Similarity=0.207  Sum_probs=89.4

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC--CCCHHHHhcccCCCCcEEEeecCC----
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS--SLSITEIASVTNRKDKFVGLHFFN----  114 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS--~l~i~~la~~~~~p~r~ig~Hf~~----  114 (160)
                      +.++++..+++.++|+||-|+|-+.  -.+++.++...++++++|.+.+|  ..++..+........+++|.|++.    
T Consensus        46 v~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~  123 (437)
T PRK08655         46 VEYANDNIDAAKDADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRT  123 (437)
T ss_pred             CeeccCHHHHhccCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCC
Confidence            4566777677899999999999753  36889999999999999998887  566667776665556899999764    


Q ss_pred             CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       115 P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      |......+-++++..++++.++++.++++.+|..++.+
T Consensus       124 ~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~  161 (437)
T PRK08655        124 PSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVT  161 (437)
T ss_pred             cccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            33455677788888899999999999999999999876

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.34  E-value=6.5e-06  Score=68.24  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC---HHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS---ITEIASVTNRKDKFVGLHFFNPVPM-  118 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~---i~~la~~~~~p~r~ig~Hf~~P~~~-  118 (160)
                      ..+++++++.++|+||.|+|..  ...+++.++...++++++|... ++..   +..+.......-|+++.|++...+. 
T Consensus        56 ~~~~~~~~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~  132 (307)
T PRK07502         56 VTTSAAEAVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHS  132 (307)
T ss_pred             ecCCHHHHhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCccc
Confidence            3456656789999999999974  3578888888888888877543 4434   3344444444458999999986442 


Q ss_pred             -----------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         119 -----------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       119 -----------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                                 ...+.+++...++++.++.+..+++.+|..++.+
T Consensus       133 G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~  177 (307)
T PRK07502        133 GPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEM  177 (307)
T ss_pred             chhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence                       1235677888899999999999999999999886

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.31  E-value=5.6e-07  Score=79.89  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             CcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942          82 SAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP  160 (160)
Q Consensus        82 ~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~  160 (160)
                      +.....-+..-+.++++..+..++ .+...........+.|||++++.|++++++++.+|++++||.||+++|.||||.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~  418 (503)
T TIGR02279       341 GDALLALTDGRTAQARAIELARPN-LVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLI  418 (503)
T ss_pred             chhhhhhccccchhhhhhhcCCCC-chHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHH
Confidence            333444455556677776665443 334444444455689999999999999999999999999999999999999984

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.04  E-value=1.2e-05  Score=66.70  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             cCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCC-cEEeecCCCCCHHHHhcccCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPAS-AILASNTSSLSITEIASVTNR  103 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~iiasnTS~l~i~~la~~~~~  103 (160)
                      .+|+.++|+ +++++||+||.++              .+|++++++++++|.+.+++. .|++||.+.+-..-+...++.
T Consensus        57 ~~i~~~~d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~  135 (307)
T PRK06223         57 TKITGTNDY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGF  135 (307)
T ss_pred             cEEEeCCCH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCC
Confidence            577878899 5799999999886              589999999999999999776 577788888766666555554


Q ss_pred             -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                       |.|++|+                  .|..++...-..+++.+|..|
T Consensus       136 ~~~~viG~------------------gt~lds~r~~~~la~~l~v~~  164 (307)
T PRK06223        136 PKNRVIGM------------------AGVLDSARFRTFIAEELNVSV  164 (307)
T ss_pred             CcccEEEe------------------CCCcHHHHHHHHHHHHhCcCh
Confidence             4788887                  344444444455666677644

>PLN02256 arogenate dehydrogenase

Probab=98.02  E-value=7.3e-05  Score=62.48  Aligned_cols=109  Identities=9%  Similarity=0.001  Sum_probs=81.1

Q ss_pred             ceecCChhhhc-CCCcEEEEeccCChHHHHHHHHHH-hhhCCCCcEEeecCC--CCCHHHHhcccCCCCcEEEeecCCCC
Q psy3942          41 IKGSSKVEDSV-SQSDLVIEAIVENMDIKHKLFTSV-DKIAPASAILASNTS--SLSITEIASVTNRKDKFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al-~~adlViEav~E~l~~K~~v~~~l-~~~~~~~~iiasnTS--~l~i~~la~~~~~p~r~ig~Hf~~P~  116 (160)
                      +...++.++.+ .++|+|+-|+|-.  .=.+++.++ ...++++++|.+-+|  +.++..+...+....+++|.|++.++
T Consensus        79 v~~~~~~~e~~~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~  156 (304)
T PLN02256         79 VSFFRDPDDFCEEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGP  156 (304)
T ss_pred             CeeeCCHHHHhhCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCC
Confidence            44556665444 4799999999853  446777887 456789999988888  56777777776555589999999987


Q ss_pred             CCC-------ceEE----EecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         117 PMM-------KLLE----VIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       117 ~~~-------~lVE----vv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      ...       +++.    +++ +.++++.++.+.+|++.+|..++..
T Consensus       157 e~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~l~~~lGa~v~~~  202 (304)
T PLN02256        157 ESGKGGWAGLPFVYDKVRIGD-EGEREARCERFLDIFEEEGCRMVEM  202 (304)
T ss_pred             CCCccccCCCeEEEecceecC-CCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            643       1111    112 6789999999999999999999986

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.85  E-value=9.3e-05  Score=68.11  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=82.9

Q ss_pred             ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC--CCCHHHHhcccC-CCCcEEEeecCCCCC--
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS--SLSITEIASVTN-RKDKFVGLHFFNPVP--  117 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS--~l~i~~la~~~~-~p~r~ig~Hf~~P~~--  117 (160)
                      ..+++.+++.++|+|+.|+|..  .-.++++++....+++++|...+|  +-.+..+...+. .+-|+++-|++.=+.  
T Consensus        53 ~~~~~~~~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~  130 (735)
T PRK14806         53 GEEDLAEAVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKS  130 (735)
T ss_pred             ccCCHHHHhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcc
Confidence            3456666789999999999964  578999999998888887654333  223666766553 367999999975111  


Q ss_pred             ----------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         118 ----------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       118 ----------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                                ..+.+.++++..++++..+.+.++++.+|+.++.+
T Consensus       131 g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~  175 (735)
T PRK14806        131 GVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM  175 (735)
T ss_pred             hhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence                      23467889999999999999999999999988887

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.74  E-value=0.00037  Score=56.87  Aligned_cols=104  Identities=12%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccC--CCCcEEEeecCC------C
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTN--RKDKFVGLHFFN------P  115 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~--~p~r~ig~Hf~~------P  115 (160)
                      ..+.++ +.++|+||-|+|.+.  -.+++.++.. ++++++|...+|+  ...+...+.  .+.++++.|++.      |
T Consensus        50 ~~~~~~-~~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp  123 (275)
T PRK08507         50 IVSFEE-LKKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPMAGTENSGP  123 (275)
T ss_pred             cCCHHH-HhcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCcCcCchhhH
Confidence            445644 556999999999765  4557788877 7888887764443  233333221  246899999974      4


Q ss_pred             CC------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         116 VP------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       116 ~~------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      ..      ....+-++++..++++.++.+..+++.+|..++.+.
T Consensus       124 ~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~  167 (275)
T PRK08507        124 KAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD  167 (275)
T ss_pred             HhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence            22      345677888889999999999999999999998874

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.72  E-value=0.00041  Score=56.43  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCC----------
Q psy3942          49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPV----------  116 (160)
Q Consensus        49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~----------  116 (160)
                      ++++++|+||=|+|-  +.=.++++++....+++++|.--+|.  -++..+........+|+|.|++.-+          
T Consensus        41 ~~~~~~DlvvlavP~--~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~  118 (258)
T PF02153_consen   41 EAVEDADLVVLAVPV--SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADA  118 (258)
T ss_dssp             HHGGCCSEEEE-S-H--HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TT
T ss_pred             hHhcCCCEEEEcCCH--HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcc
Confidence            579999999999974  45778999999999999998855543  3333444444445799999998865          


Q ss_pred             C--CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         117 P--MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       117 ~--~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      .  ....+=|+++..|+++.++.+.+|++.+|..|+.+
T Consensus       119 ~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  119 DLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM  156 (258)
T ss_dssp             TTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred             cccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence            1  34567788999999999999999999999999886

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.66  E-value=4.3e-05  Score=62.11  Aligned_cols=72  Identities=18%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             cCceecCChhhhcCCCcEEEE--------------eccCChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhcccC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIE--------------AIVENMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVTN  102 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViE--------------av~E~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~~  102 (160)
                      .+|+.++|++++++|||+||+              .+.+|.++++++++++++.| |++++.  ||-..+-..-+...++
T Consensus        56 ~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~sg  134 (263)
T cd00650          56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYSG  134 (263)
T ss_pred             cEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHhC
Confidence            578888886578999999999              78899999999999999999 666443  4433332223333333


Q ss_pred             C-CCcEEEee
Q psy3942         103 R-KDKFVGLH  111 (160)
Q Consensus       103 ~-p~r~ig~H  111 (160)
                      . |.|++|+.
T Consensus       135 ~~~~kviG~~  144 (263)
T cd00650         135 LPKEKVIGLG  144 (263)
T ss_pred             CCchhEEEee
Confidence            3 57888886

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.61  E-value=0.00084  Score=54.96  Aligned_cols=110  Identities=8%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM-  118 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~-  118 (160)
                      .++.+.+..+.++++|+||=|++-.. + .+++..+...+.++.+|.|-.+++++..+.....+..++++.|+-.|... 
T Consensus        52 g~~~~~~~~e~~~~aDvVilav~p~~-~-~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~  129 (279)
T PRK07679         52 GVKGTHNKKELLTDANILFLAMKPKD-V-AEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAIL  129 (279)
T ss_pred             CceEeCCHHHHHhcCCEEEEEeCHHH-H-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHh
Confidence            35666777667789999999998443 2 34567887777889999998899999999987765567999987544333 


Q ss_pred             CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         119 MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      ..+.=++.+...+++..+.+..++..+|+ ++.+
T Consensus       130 ~~~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v  162 (279)
T PRK07679        130 KSATAISPSKHATAEHIQTAKALFETIGL-VSVV  162 (279)
T ss_pred             cccEEEeeCCCCCHHHHHHHHHHHHhCCc-EEEe
Confidence            34555557888889999999999999998 5554

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0023  Score=53.05  Aligned_cols=102  Identities=15%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCCCCC------CCc
Q psy3942          49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL--SITEIASVTNRKDKFVGLHFFNPVP------MMK  120 (160)
Q Consensus        49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~P~~------~~~  120 (160)
                      .+++++|+||=|||  +..=-++++++....+++++|.=-||.=  ++..+......-.+|+|.|++.-++      ...
T Consensus        60 ~~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~  137 (279)
T COG0287          60 EAAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENA  137 (279)
T ss_pred             hhcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCC
Confidence            56789999999998  4556679999999999999998665543  3334433332211899999988652      334


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         121 LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       121 lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      .+=+.++..++.+.++.+.++++.+|..++.+
T Consensus       138 ~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~  169 (279)
T COG0287         138 VVVLTPSEGTEKEWVEEVKRLWEALGARLVEM  169 (279)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence            56677888899999999999999999998886

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.20  E-value=0.003  Score=50.27  Aligned_cols=106  Identities=8%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC--
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM--  118 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~--  118 (160)
                      +..++++++.+.++|+|+=|+|-..  -+++++++....+ +.+|.|.+.++++..|...+....+++-+|+-.|...  
T Consensus        54 ~~~~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~  130 (245)
T PRK07634         54 VSTTTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGK  130 (245)
T ss_pred             cEEeCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhc
Confidence            5566788677899999999999653  4788888887665 5699999999999999998876557777776444332  


Q ss_pred             -CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         119 -MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       119 -~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                       .+.+  ..+...+++..+.+..++..+|..+.+
T Consensus       131 g~~~~--~~~~~~~~~~~~~v~~lf~~~G~~~~~  162 (245)
T PRK07634        131 SISLY--TMGQSVNETHKETLQLILKGIGTSQLC  162 (245)
T ss_pred             CCeEE--eeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence             2233  244567889999999999999998864

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.12  E-value=0.005  Score=52.98  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh---CCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI---APASAILASNTSSL--SITEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~---~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      ++.++.+++||+||=|+|...  =.++++++...   .+++|+|.=-+|.=  ++..+   .....+|+|.|++.-++..
T Consensus        43 ~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s  117 (370)
T PRK08818         43 LDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKS  117 (370)
T ss_pred             CCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCC
Confidence            345567899999999998655  45678888775   68999887544432  23333   2223479999999865533


Q ss_pred             ce----EEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         120 KL----LEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       120 ~l----VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      .+    .=|+. +...++.++++.+|++.+|..|+.+
T Consensus       118 ~lf~g~~~ilt-p~~~~~~~~~v~~l~~~~Ga~v~~~  153 (370)
T PRK08818        118 PTLKGRVMVVC-EARLQHWSPWVQSLCSALQAECVYA  153 (370)
T ss_pred             cccCCCeEEEe-CCCchhHHHHHHHHHHHcCCEEEEc
Confidence            22    11222 3355666889999999999999886

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.11  E-value=0.0054  Score=51.98  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=72.9

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccC----CCCcEEEeecCCCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTN----RKDKFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~----~p~r~ig~Hf~~P~  116 (160)
                      ...+++..++++++|+||=|+|..-.++ +++..+-..+++++++ -++|++++..+...+.    ...+=+|+--|+|.
T Consensus        69 A~~AaS~aEAAa~ADVVIL~LPd~aaV~-eVl~GLaa~L~~GaIV-ID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~  146 (341)
T TIGR01724        69 VKVVSDDKEAAKHGEIHVLFTPFGKGTF-SIARTIIEHVPENAVI-CNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPA  146 (341)
T ss_pred             CeecCCHHHHHhCCCEEEEecCCHHHHH-HHHHHHHhcCCCCCEE-EECCCCCHHHHHHHHHHHhhcCccccCeeccCCC
Confidence            4556667678899999999999665554 4556677777888766 5667777776655332    12333555444443


Q ss_pred             C--CCce--EEEe------cCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         117 P--MMKL--LEVI------RTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       117 ~--~~~l--VEvv------~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      -  -++-  .=|+      .....++|.+++..+++++.||.|.++
T Consensus       147 ~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~  192 (341)
T TIGR01724       147 AVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV  192 (341)
T ss_pred             CCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence            2  2221  1222      223456788899999999999999987

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.05  E-value=0.0046  Score=53.38  Aligned_cols=102  Identities=13%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccCChHHH---------HHHHHHHhhhCCCCcEEe-ecCCCCCH-HHHhcccCCCCc
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIK---------HKLFTSVDKIAPASAILA-SNTSSLSI-TEIASVTNRKDK  106 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E~l~~K---------~~v~~~l~~~~~~~~iia-snTS~l~i-~~la~~~~~p~r  106 (160)
                      ..+++.+++.++++++||+||+|+|++++.|         .++++.+... +++.++. .+|..... .++...+.  + 
T Consensus        58 ~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~--~-  133 (388)
T PRK15057         58 KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYR--T-  133 (388)
T ss_pred             CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHHhh--c-
Confidence            3567777777667899999999999998777         3455666663 5555443 43333323 35554332  1 


Q ss_pred             EEEeecCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHH--cCC
Q psy3942         107 FVGLHFFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKS--IGK  147 (160)
Q Consensus       107 ~ig~Hf~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~--lgk  147 (160)
                       .|+.| +|....+=-         =||-|. + ++..+++..++..  ++.
T Consensus       134 -~~v~~-~PE~l~~G~a~~d~~~p~rvv~G~-~-~~~~~~~~~~l~~~~~~~  181 (388)
T PRK15057        134 -ENIIF-SPEFLREGKALYDNLHPSRIVIGE-R-SERAERFAALLQEGAIKQ  181 (388)
T ss_pred             -CcEEE-CcccccCCcccccccCCCEEEEEc-C-cHHHHHHHHHHHhhhhcC
Confidence             13433 666544321         234443 2 3456777777744  554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.75  E-value=0.016  Score=47.69  Aligned_cols=111  Identities=12%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH-------HHhcccCCCCcEEEeec
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT-------EIASVTNRKDKFVGLHF  112 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~-------~la~~~~~p~r~ig~Hf  112 (160)
                      .++.+++.++.+.++|+||-|++.  ....+++..+...+++++++.+.+.+++..       .+..........  .-+
T Consensus        58 ~~~~~~~~~~~~~~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~  133 (325)
T PRK00094         58 NLRATTDLAEALADADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVL  133 (325)
T ss_pred             CeEEeCCHHHHHhCCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEE
Confidence            466677886678899999999998  467888999999989999887666555542       222222210111  122


Q ss_pred             CCCCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         113 FNPVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       113 ~~P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      ..|..       ...++.+.   ..+.+.++++..+++..|..+....|..|
T Consensus       134 ~~P~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~d~~g  182 (325)
T PRK00094        134 SGPSFAKEVARGLPTAVVIA---STDEELAERVQELFHSPYFRVYTNTDVIG  182 (325)
T ss_pred             ECccHHHHHHcCCCcEEEEE---eCCHHHHHHHHHHhCCCCEEEEecCCcch
Confidence            33442       12334443   33688899999999999998877777655

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.72  E-value=0.016  Score=48.38  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH-HHhcccCCCCcEEEeecC----
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT-EIASVTNRKDKFVGLHFF----  113 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~-~la~~~~~p~r~ig~Hf~----  113 (160)
                      .++..+++. +++.++|+||.|++-.  .+.+++..|...++++++|.+.+.++... .+...+.....+.|.+++    
T Consensus        60 ~~~~~~~~~-~~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~  136 (341)
T PRK08229         60 SAIAFSTDP-AALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVIS  136 (341)
T ss_pred             ceeEeccCh-hhccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEe
Confidence            456677787 4789999999999754  45789999999999999998888888754 566665433334454442    


Q ss_pred             -CCCCCC--ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942         114 -NPVPMM--KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP  156 (160)
Q Consensus       114 -~P~~~~--~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~p  156 (160)
                       .|-...  ..-++.-+.  . +..+++..+++..|.......|.-
T Consensus       137 ~~pg~~~~~~~g~l~~~~--~-~~~~~~~~~l~~~g~~~~~~~di~  179 (341)
T PRK08229        137 RGPGAFHQGTSGALAIEA--S-PALRPFAAAFARAGLPLVTHEDMR  179 (341)
T ss_pred             cCCceEEecCCCceEecC--C-chHHHHHHHHHhcCCCceecchhH
Confidence             221100  011122221  2 446788899999998887777643

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.71  E-value=0.026  Score=45.56  Aligned_cols=102  Identities=14%  Similarity=0.078  Sum_probs=72.5

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK  120 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~  120 (160)
                      .+.+++..+.++++|+|+-|++ + ..-.+++.++.  ..++.++.|-..++++..|...+....+++-+++..|.....
T Consensus        49 ~~~~~~~~~~~~~aDvVilav~-p-~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~  124 (258)
T PRK06476         49 VRIAKDNQAVVDRSDVVFLAVR-P-QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERK  124 (258)
T ss_pred             ceEeCCHHHHHHhCCEEEEEeC-H-HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCC
Confidence            5566777666789999999999 3 44467777773  467788888889999999999887656777777665544332


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         121 LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       121 lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      -+-.+.+.      .+.+..++..+|..+.+.
T Consensus       125 g~t~~~~~------~~~~~~l~~~lG~~~~~~  150 (258)
T PRK06476        125 GVTAIYPP------DPFVAALFDALGTAVECD  150 (258)
T ss_pred             CCeEecCC------HHHHHHHHHhcCCcEEEC
Confidence            22223221      257889999999987753

>PLN02712 arogenate dehydrogenase

Probab=96.68  E-value=0.023  Score=52.38  Aligned_cols=110  Identities=11%  Similarity=0.009  Sum_probs=77.7

Q ss_pred             ceecCChhhhcC-CCcEEEEeccCChHHHHHHHHHHhh-hCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCC
Q psy3942          41 IKGSSKVEDSVS-QSDLVIEAIVENMDIKHKLFTSVDK-IAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al~-~adlViEav~E~l~~K~~v~~~l~~-~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~  116 (160)
                      +...+++++.+. ++|+||=|+|-  ..=.+++.++.. .+++++++..-+|+  .++..+.......-+++|.|++.++
T Consensus       412 v~~~~~~~el~~~~aDvVILavP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~  489 (667)
T PLN02712        412 VSYFSDADDLCEEHPEVILLCTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGP  489 (667)
T ss_pred             CeEeCCHHHHHhcCCCEEEECCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCc
Confidence            445667755454 58999999993  444666777754 56789999877776  6677777666555579999999987


Q ss_pred             CCCc-----eEE-----EecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         117 PMMK-----LLE-----VIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       117 ~~~~-----lVE-----vv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      ....     +-.     ++.++.+..+.++.+.++++.+|..++.+
T Consensus       490 e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m  535 (667)
T PLN02712        490 ESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM  535 (667)
T ss_pred             cccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence            7531     111     12345556677777889999999999886

>PRK07680 late competence protein ComER; Validated

Probab=96.62  E-value=0.028  Score=45.78  Aligned_cols=109  Identities=15%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM-  118 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~-  118 (160)
                      .++.+.+..+.+.++|+||=|++-  ..=.++++++.....++.+|.|-++++++..|...+.  .+++-+++--|... 
T Consensus        49 g~~~~~~~~~~~~~aDiVilav~p--~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~  124 (273)
T PRK07680         49 GIHVAKTIEEVISQSDLIFICVKP--LDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRAL  124 (273)
T ss_pred             CeEEECCHHHHHHhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHh
Confidence            356667776668999999999962  2235677888877888889999999999999988775  33443333212110 


Q ss_pred             CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         119 MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      .-..=+..+...+++..+.+..++..+|. ++.+.
T Consensus       125 ~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~  158 (273)
T PRK07680        125 SGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIE  158 (273)
T ss_pred             hccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEC
Confidence            11111234666788888999999999995 55553

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.56  E-value=0.037  Score=45.37  Aligned_cols=108  Identities=7%  Similarity=0.022  Sum_probs=78.6

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK  120 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~  120 (160)
                      +..+++..+.+.++|+||-|++  ...=++++.++....+++++|.|-..++++.+|.+.+.. .+++-+=+--|.....
T Consensus        52 ~~~~~~~~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~  128 (277)
T PRK06928         52 VELADNEAEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGV  128 (277)
T ss_pred             eEEeCCHHHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhh
Confidence            4456677667899999999998  333447888888878889999999999999999998753 3565543333333222


Q ss_pred             eEEE-ecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         121 LLEV-IRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       121 lVEv-v~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      -+=. ..+...+++-.+.+..++..+|+...+
T Consensus       129 g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        129 GTSLVAHAETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             hcEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            2222 356778888899999999999997644

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=96.54  E-value=0.051  Score=43.79  Aligned_cols=109  Identities=15%  Similarity=0.247  Sum_probs=79.4

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC-
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM-  119 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~-  119 (160)
                      ++.+.+..+.+.++|+||=|++ +..+ .+++.++.....++.+|.|-..++++.+|...++...+++-+=+-.|.... 
T Consensus        31 ~~~~~~~~e~~~~aDiIiLaVk-P~~i-~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~  108 (245)
T TIGR00112        31 IVASSDAQEAVKEADVVFLAVK-PQDL-EEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGA  108 (245)
T ss_pred             cEEeCChHHHHhhCCEEEEEeC-HHHH-HHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhC
Confidence            5556666556789999999998 4444 477888887777889999999999999999888644455543322222222 


Q ss_pred             ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         120 KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       120 ~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      -..=+..+..++++-.+.+..++..+|+...+
T Consensus       109 g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v  140 (245)
T TIGR00112       109 GVTAIAANANVSEEDRALVLALFKAVGEVVEL  140 (245)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            23345567888899999999999999985543

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.50  E-value=0.1  Score=43.68  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=76.5

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCC-cEEEeecCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNRKD-KFVGLHFFN  114 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~-r~ig~Hf~~  114 (160)
                      ..+.+++|=.+|++++|++|==.|.--. --++.+++-...++++||+ ||-++|..   .+.+.++|.+ .+..+|+-.
T Consensus       125 aGvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa  202 (340)
T TIGR01723       125 LGLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGC  202 (340)
T ss_pred             cCceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence            4565555544799999999987776431 2468888888899999886 45556666   4445555543 455556554


Q ss_pred             CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       115 P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      =|.+-.=+=|+.| ..+++.+++..+++++.||.|.++
T Consensus       203 VPgt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~  239 (340)
T TIGR01723       203 VPEMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKM  239 (340)
T ss_pred             CCCCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeec
Confidence            3333334555554 666777899999999999999987

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.42  E-value=0.057  Score=44.33  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=83.2

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK  120 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~  120 (160)
                      ++.+++..+.+.+||+||=|++ + ..=.+++.++.....+++++.|--.++++.+|...+..+.+++-+=+--|.....
T Consensus        51 ~~~~~~~~e~~~~aDiIiLavk-P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~  128 (272)
T PRK12491         51 ITITTNNNEVANSADILILSIK-P-DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGE  128 (272)
T ss_pred             cEEeCCcHHHHhhCCEEEEEeC-h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcC
Confidence            4556676566789999999999 3 5556788888888889999999999999999999887555666544333433333


Q ss_pred             eEEE-ecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         121 LLEV-IRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       121 lVEv-v~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      -+=. ..+...+++-.+.+..++..+|+. +.+.
T Consensus       129 g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~~  161 (272)
T PRK12491        129 GMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVVN  161 (272)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEEc
Confidence            2322 467788888899999999999996 4553

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.19  E-value=0.028  Score=46.44  Aligned_cols=110  Identities=11%  Similarity=0.094  Sum_probs=68.0

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeecCCCCCHH---HHhcccCC-CCcEEEeecCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASNTSSLSIT---EIASVTNR-KDKFVGLHFFN  114 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasnTS~l~i~---~la~~~~~-p~r~ig~Hf~~  114 (160)
                      +..+++..++++++|+||-|+|.+..++.-++.  .+-..+++++++ .|+|++++.   +++..+.. .-+++-.--..
T Consensus        45 ~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lv-id~sT~~p~~~~~l~~~l~~~g~~~ldapV~g  123 (296)
T PRK15461         45 ATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALV-IDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR  123 (296)
T ss_pred             CcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence            445666667789999999999999888855542  244456677766 445555553   55555432 22333221111


Q ss_pred             -CCC--CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         115 -PVP--MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       115 -P~~--~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                       |+.  ...++ ++.|  -+++++++++.+++.+|+..+.+.+
T Consensus       124 ~~~~a~~g~l~-~~~g--g~~~~~~~~~p~l~~~g~~~~~~g~  163 (296)
T PRK15461        124 TSDNAITGTLL-LLAG--GTAEQVERATPILMAMGNELINAGG  163 (296)
T ss_pred             CHHHHHhCcEE-EEEC--CCHHHHHHHHHHHHHHcCCeEeeCC
Confidence             111  11122 2332  3889999999999999998888754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.91  E-value=0.015  Score=45.70  Aligned_cols=37  Identities=24%  Similarity=0.291  Sum_probs=33.9

Q ss_pred             hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEee
Q psy3942          50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS   87 (160)
Q Consensus        50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iias   87 (160)
                      .++++|+|||| .|+.+.|+.++.++....+..+++++
T Consensus       107 ~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354       107 FFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             HhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            57899999999 79999999999999999988888874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.88  E-value=0.029  Score=48.43  Aligned_cols=113  Identities=15%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChH--------HHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhccc-CC-CC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMD--------IKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVT-NR-KD  105 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~--------~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~-~~-p~  105 (160)
                      +++++++++.++++++|+||-|+|-...        .=.++...+.+.+++++++. ++|++++.   ++.... .+ ..
T Consensus        62 g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi-~~STv~pgt~~~l~~~~~~~~~g  140 (411)
T TIGR03026        62 GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVV-LESTVPPGTTEEVVKPILERASG  140 (411)
T ss_pred             CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEE-EeCcCCCCchHHHHHHHHHhhcC
Confidence            5688889987779999999999997643        34566677877778887665 34444333   443221 11 00


Q ss_pred             -c-EEEee-cCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHHcC-CeEEEecC
Q psy3942         106 -K-FVGLH-FFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKSIG-KTTIVCKD  154 (160)
Q Consensus       106 -r-~ig~H-f~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~lg-k~pv~v~d  154 (160)
                       + ...++ .++|....+--         =|+.|  .+++..+++..++..++ +.++.+.+
T Consensus       141 ~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (411)
T TIGR03026       141 LKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTS  200 (411)
T ss_pred             CCCCCCceEEECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCC
Confidence             0 11011 23454433321         36666  58999999999999998 56777654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.64  E-value=0.11  Score=44.11  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHH-HHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF-TSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM  118 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~-~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~  118 (160)
                      .++.. +.++++++||+|+=++|....  .+++ .++...++++++| +-.+++++..+.......-+++-+.+=.|.+.
T Consensus        61 G~~~~-s~~eaa~~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~  136 (330)
T PRK05479         61 GFEVL-TVAEAAKWADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHL  136 (330)
T ss_pred             CCeeC-CHHHHHhcCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchh
Confidence            34444 676789999999999996654  6887 7898889999999 99999999988765543445776665556551


Q ss_pred             C----------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942         119 M----------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus       119 ~----------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      .          |.+-- .+...+.+..+.+.+++..+|-++.
T Consensus       137 vr~~~~~G~Gv~~l~a-v~~d~t~~a~~~a~~l~~aiG~~~~  177 (330)
T PRK05479        137 VRREYEEGGGVPCLIA-VHQDASGNAKDLALAYAKGIGGTRA  177 (330)
T ss_pred             hhhhhhcCCCceEEEE-ecCCCCHHHHHHHHHHHHHcCCCcc
Confidence            1          11221 3344457789999999999999986

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.47  E-value=0.12  Score=42.96  Aligned_cols=108  Identities=14%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-CCCCcEEeecCCCCCHH------HHhcccCCCCcEEEeecCCCCC
Q psy3942          45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSSLSIT------EIASVTNRKDKFVGLHFFNPVP  117 (160)
Q Consensus        45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-~~~~~iiasnTS~l~i~------~la~~~~~p~r~ig~Hf~~P~~  117 (160)
                      ++++++++++|+|+-|+|.  +.-++++.++... .++++++.+.|.+++..      ++....-...+++.  +..|..
T Consensus        39 ~~~~~~~~~advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~--i~gp~~  114 (308)
T PRK14619         39 LSLAAVLADADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVV--LSGPNL  114 (308)
T ss_pred             CCHHHHHhcCCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEE--EECCCc
Confidence            4666678999999999997  4677888999764 67889888877655443      22211100112221  223321


Q ss_pred             CCc-----eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         118 MMK-----LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       118 ~~~-----lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      ...     ...++ -...+.+..+++..++...|..+....|.-|
T Consensus       115 a~ei~~~~~~~~~-~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G  158 (308)
T PRK14619        115 SKEIQQGLPAATV-VASRDLAAAETVQQIFSSERFRVYTNSDPLG  158 (308)
T ss_pred             HHHHhcCCCeEEE-EEeCCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence            100     01111 1234678899999999999998887666544

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.40  E-value=0.093  Score=43.05  Aligned_cols=105  Identities=14%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHH---HHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF---TSVDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFN  114 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~---~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~  114 (160)
                      +..+++..++++++|+||=|+|-+-.++ +++   ..+-...+++.++.. +|++++.   +++..+..    -|++|..
T Consensus        40 ~~~~~s~~~~~~~advVil~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vd  113 (288)
T TIGR01692        40 AQAAASPAEAAEGADRVITMLPAGQHVI-SVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMD  113 (288)
T ss_pred             CeecCCHHHHHhcCCEEEEeCCChHHHH-HHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEE
Confidence            4556677778899999999999876665 444   556556677776653 3355554   44444321    2455554


Q ss_pred             -CCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         115 -PVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       115 -P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                       |+.       ...+.=++.|   +++.++++..++..+|+..+.+.+
T Consensus       114 aPv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~~~g~  158 (288)
T TIGR01692       114 APVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIVHCGD  158 (288)
T ss_pred             CCCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeEeeCC
Confidence             222       1234444433   578899999999999999888864

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02712 arogenate dehydrogenase

Probab=95.29  E-value=0.25  Score=45.72  Aligned_cols=110  Identities=8%  Similarity=-0.035  Sum_probs=69.5

Q ss_pred             ceecCChhhhc-CCCcEEEEeccCChHHHHHHHHHHh-hhCCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCCCC
Q psy3942          41 IKGSSKVEDSV-SQSDLVIEAIVENMDIKHKLFTSVD-KIAPASAILASNTSSL--SITEIASVTNRKDKFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al-~~adlViEav~E~l~~K~~v~~~l~-~~~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~P~  116 (160)
                      +...+++++.+ .++|+|+=|+|-  ..=.+++.++. ..++++++|..-+|.=  ++..+...+...-+++|.|++.=+
T Consensus        95 v~~~~d~~e~~~~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~  172 (667)
T PLN02712         95 VSFFLDPHDLCERHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGP  172 (667)
T ss_pred             CEEeCCHHHHhhcCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCC
Confidence            45566775434 579999999994  44567777775 5578888776554322  122344444333369999998755


Q ss_pred             CC-----CceEEEec-----CCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         117 PM-----MKLLEVIR-----TNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       117 ~~-----~~lVEvv~-----~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      ..     ..+..+..     ......+.++++.++++.+|..++..
T Consensus       173 e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~m  218 (667)
T PLN02712        173 QSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEM  218 (667)
T ss_pred             ccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEe
Confidence            41     11222222     22334456788889999999999886

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=95.03  E-value=0.48  Score=38.37  Aligned_cols=106  Identities=14%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC-ce
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM-KL  121 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~-~l  121 (160)
                      ...+..+.+.++|+||=|++  ...=.+++.++....++ .+|.|-..+++++.+...+....+++.+-+-.|.... ..
T Consensus        47 ~~~~~~~~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~  123 (260)
T PTZ00431         47 YLQSNEELAKTCDIIVLAVK--PDLAGKVLLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGS  123 (260)
T ss_pred             EeCChHHHHHhCCEEEEEeC--HHHHHHHHHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhccee
Confidence            34454456789999999976  34455788888776665 4679999999999999877654445444333343332 33


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       122 VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      .=+..+..++++..+.+..++..+|+...+
T Consensus       124 t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        124 LVFCANNNVDSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence            455677788999999999999999996654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.01  E-value=0.097  Score=43.66  Aligned_cols=108  Identities=13%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC-----HHHHhcccCC--CCcEEEeec
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS-----ITEIASVTNR--KDKFVGLHF  112 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~-----i~~la~~~~~--p~r~ig~Hf  112 (160)
                      ++..+++++++++++|+|+.|++..- + ++++    +.+++++++.+.+.++.     ...++..+..  ..++..  .
T Consensus        61 ~~~~~~~~~e~~~~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~--~  132 (328)
T PRK14618         61 ELYPTADPEEALAGADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV--L  132 (328)
T ss_pred             CeEEeCCHHHHHcCCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE--E
Confidence            36677788777899999999999993 3 4444    34556777666665554     4455554421  112221  1


Q ss_pred             CCCCCCC------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         113 FNPVPMM------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       113 ~~P~~~~------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      -.|....      +-.-++.  ..+++..+++..++...|..+....|.-|
T Consensus       133 ~gP~~a~~~~~~~~~~~~~~--~~~~~~~~~v~~ll~~~~~~v~~~~di~g  181 (328)
T PRK14618        133 SGPNHAEEIARFLPAATVVA--SPEPGLARRVQAAFSGPSFRVYTSRDRVG  181 (328)
T ss_pred             ECccHHHHHHcCCCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            2333322      2223333  34788899999999999988877677655

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=95.00  E-value=0.65  Score=38.89  Aligned_cols=141  Identities=15%  Similarity=0.123  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhcCCc---hhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEE
Q psy3942           9 EEGEKLIDSTLSRIKGSSK---EEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAIL   85 (160)
Q Consensus         9 ~~a~~~i~~~l~~~~~~~~---~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ii   85 (160)
                      +.....|+.......+.-.   ...-.+..---..+.+++|=.+|++++|++|==.|.--. --++.+++-..+++++||
T Consensus        94 e~vmp~ir~~v~~~a~~~pkppk~~ihf~~pEdaGvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII  172 (342)
T PRK00961         94 EKVMPKIREKVKAKAKELPKPPKGCIHFVHPEDLGLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV  172 (342)
T ss_pred             HHhhHHHHHHHHHHHhhCCCCCccceeecCHHHcCceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE
Confidence            5555666666665544311   000000111114565555544799999999987775431 247888888899999988


Q ss_pred             eecCCCCCHHHHhc---ccCCCC-cEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942          86 ASNTSSLSITEIAS---VTNRKD-KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus        86 asnTS~l~i~~la~---~~~~p~-r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      + ||-++|...|..   .++|.+ .+..+|+-.= +.++-==.+.-...++|.+++..+++++.||.|.++
T Consensus       173 ~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV-Pgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~  241 (342)
T PRK00961        173 T-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV-PEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKM  241 (342)
T ss_pred             e-ccccCCHHHHHHHHHHhCcccCCeeccCCCCC-CCCCCceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence            6 555666665554   444433 4555555442 233311122345678888999999999999999987

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.21  E-value=0.18  Score=42.59  Aligned_cols=114  Identities=10%  Similarity=0.043  Sum_probs=73.4

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH------HH-HhcccCCCCcEEEee
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI------TE-IASVTNRKDKFVGLH  111 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i------~~-la~~~~~p~r~ig~H  111 (160)
                      .++..++|+++++.++|+|+=|+|  ...=+++++++....++++++.|-+-++..      ++ |.+.+.. .++..  
T Consensus        63 ~~i~~t~d~~~a~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--  137 (341)
T PRK12439         63 DTLRATTDFAEAANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--  137 (341)
T ss_pred             CCeEEECCHHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--
Confidence            357788898778999999999998  444567899999999999766655556664      33 3333321 23221  


Q ss_pred             cCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcc
Q psy3942         112 FFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF  158 (160)
Q Consensus       112 f~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf  158 (160)
                      +..|-+..     ....++-+.. +++..+.+.+++..-+..+....|.-|.
T Consensus       138 l~GP~~a~ev~~g~~t~~via~~-~~~~~~~v~~lf~~~~~~v~~s~Di~gv  188 (341)
T PRK12439        138 LAGPNIAREVAEGYAAAAVLAMP-DQHLATRLSPLFRTRRFRVYTTDDVVGV  188 (341)
T ss_pred             EECCCHHHHHHcCCCeEEEEEeC-CHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence            33443321     1122222222 6777888888888888777777776653

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=93.88  E-value=0.13  Score=44.96  Aligned_cols=68  Identities=22%  Similarity=0.428  Sum_probs=46.9

Q ss_pred             CceecCChhhhcCCCcEEEEecc----------CChHHH------------------------HHHHHHHhhhCCCCcEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV----------ENMDIK------------------------HKLFTSVDKIAPASAIL   85 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~----------E~l~~K------------------------~~v~~~l~~~~~~~~ii   85 (160)
                      ++..|+|.++|+.|||+||-++.          |.+.+|                        +++.+++.+.|| +++|
T Consensus        62 ~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~l  140 (419)
T cd05296          62 KVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWL  140 (419)
T ss_pred             EEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEE
Confidence            58889999999999999998753          333333                        388888999984 5544


Q ss_pred             --eecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          86 --ASNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        86 --asnTS~l~i~~la~~~~~p~r~ig~  110 (160)
                        .||-..+-...+...+  +.|++|+
T Consensus       141 in~TNP~~ivt~a~~k~~--~~rviGl  165 (419)
T cd05296         141 INFTNPAGIVTEAVLRHT--GDRVIGL  165 (419)
T ss_pred             EEecCHHHHHHHHHHHhc--cCCEEee
Confidence              3776664333333333  7788887

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.60  E-value=1.2  Score=35.00  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             hhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-----------------HHHhcccCCCCcEEE
Q psy3942          47 VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-----------------TEIASVTNRKDKFVG  109 (160)
Q Consensus        47 ~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-----------------~~la~~~~~p~r~ig  109 (160)
                      ..++++++|+||=|++-..  =.++++++....++ .++.+-+-.+++                 ..++..+....|++.
T Consensus        62 ~~ea~~~aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVk  138 (219)
T TIGR01915        62 NAEAAKRADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVA  138 (219)
T ss_pred             hHHHHhcCCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEee
Confidence            3367899999999998443  24556667665554 667666655554                 345555543267776


Q ss_pred             eecCCCCC-------CCceEEEecCCCCCHHHHHHHHHHHHHc-CCeEEEe
Q psy3942         110 LHFFNPVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSI-GKTTIVC  152 (160)
Q Consensus       110 ~Hf~~P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~l-gk~pv~v  152 (160)
                      .-...|..       ..+.--.+.|.  +++..+.+.+|.+.+ |..|+-+
T Consensus       139 a~~~~~a~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~  187 (219)
T TIGR01915       139 AFHNLSAVLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDA  187 (219)
T ss_pred             ccccCCHHHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccC
Confidence            62211211       11222234444  577889999999999 9999865

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=93.49  E-value=0.23  Score=43.50  Aligned_cols=69  Identities=20%  Similarity=0.351  Sum_probs=45.4

Q ss_pred             CceecCChhhhcCCCcEEEEecc----------CChHHHH------------------------HHHHHHhhhCCCCcEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV----------ENMDIKH------------------------KLFTSVDKIAPASAIL   85 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~----------E~l~~K~------------------------~v~~~l~~~~~~~~ii   85 (160)
                      ++..|+|.++|+.|||+||-++.          |.+.+|.                        ++.+++.+.| |+++|
T Consensus        61 ~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~l  139 (425)
T cd05197          61 KFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWY  139 (425)
T ss_pred             EEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEE
Confidence            68889999999999999998764          3333444                        8888899988 45543


Q ss_pred             --eecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          86 --ASNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        86 --asnTS~l~i~~la~~~~~p~r~ig~  110 (160)
                        .||-..+-..-+...+ -+.|++|+
T Consensus       140 in~TNP~di~t~a~~~~~-p~~rviG~  165 (425)
T cd05197         140 LNFTNPAGEVTEAVRRYV-PPEKAVGL  165 (425)
T ss_pred             EecCChHHHHHHHHHHhC-CCCcEEEE
Confidence              3665544333332222 23566665

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=93.42  E-value=0.94  Score=37.71  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFNPV  116 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~P~  116 (160)
                      -++.++|-.++++.+.+.+=-.|=- ..--.|-++|-.+++.+++||.....-|+.   -|-..++.+.+=+|+-.++|+
T Consensus        69 GV~vv~dD~eaa~~~Ei~VLFTPFG-k~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPA  147 (340)
T COG4007          69 GVEVVSDDAEAAEHGEIHVLFTPFG-KATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPA  147 (340)
T ss_pred             CcEEecCchhhhhcceEEEEecccc-hhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCC
Confidence            3455544446788888876544422 133456778888899999998433222222   233445667677787777764


Q ss_pred             CC----CceEEEecCCCC------CHHHHHHHHHHHHHcCCeEEEe
Q psy3942         117 PM----MKLLEVIRTNDT------SDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       117 ~~----~~lVEvv~~~~T------~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      -.    ..=-=++.|..|      +++-+++...+++++||.+.++
T Consensus       148 gvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~  193 (340)
T COG4007         148 GVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL  193 (340)
T ss_pred             CCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec
Confidence            31    112234444433      4677899999999999999987

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.41  E-value=0.12  Score=43.22  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             hcCceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccC
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTN  102 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~  102 (160)
                      ..+|++++|++ ++++||+||=++.              .|.++=+++.++|.+.+++.. |+.||-..+-..-+...++
T Consensus        55 ~~~i~~t~d~~-~~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg  133 (305)
T TIGR01763        55 DTKVTGTNNYA-DTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSG  133 (305)
T ss_pred             CcEEEecCCHH-HhCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHC
Confidence            36899999995 5999999999998              466777888888999874333 4446654443333333334


Q ss_pred             C-CCcEEEe
Q psy3942         103 R-KDKFVGL  110 (160)
Q Consensus       103 ~-p~r~ig~  110 (160)
                      . ++|++|+
T Consensus       134 ~~~~rviG~  142 (305)
T TIGR01763       134 FPKERVIGQ  142 (305)
T ss_pred             cCHHHEEEe
Confidence            4 3577776

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=93.26  E-value=0.55  Score=43.34  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhhhCCCCcEEeecCCCC--CHHHHhcccCC-CCcEEEeecCCCCC------------CCceEEEecCCCC
Q psy3942          66 DIKHKLFTSVDKIAPASAILASNTSSL--SITEIASVTNR-KDKFVGLHFFNPVP------------MMKLLEVIRTNDT  130 (160)
Q Consensus        66 ~~K~~v~~~l~~~~~~~~iiasnTS~l--~i~~la~~~~~-p~r~ig~Hf~~P~~------------~~~lVEvv~~~~T  130 (160)
                      +.=.+++.++....+++|++.=-+|.=  .+..+...+.. +.+|+|.|++.-..            ....+=+++.+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~il~p~~~~   87 (673)
T PRK11861          8 AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNVVLCALPEN   87 (673)
T ss_pred             HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeEEEecCCCC
Confidence            334578888888889999887444432  23344344432 35799999987554            3345667788999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEe
Q psy3942         131 SDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       131 ~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      +++.++++.+|++.+|..++.+
T Consensus        88 ~~~~~~~~~~l~~~~Ga~~~~~  109 (673)
T PRK11861         88 APDALARVEAMWRAARADVRAM  109 (673)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEC
Confidence            9999999999999999999886

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.11  E-value=0.32  Score=40.59  Aligned_cols=109  Identities=17%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeec-CCCC-CHHHHhcccCCCCcEEEeecCC-C
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASN-TSSL-SITEIASVTNRKDKFVGLHFFN-P  115 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasn-TS~l-~i~~la~~~~~p~r~ig~Hf~~-P  115 (160)
                      .....+..++++++|+||=+++.+-+++.=+|.  -+-+..+|++++.-. |.+. ...++++.+.    --|++|+. |
T Consensus        45 a~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~----~~G~~~lDAP  120 (286)
T COG2084          45 ATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALA----AKGLEFLDAP  120 (286)
T ss_pred             CcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCcEEecC
Confidence            334455557899999999999999998877773  454555677766633 3332 2236666553    24667776 4


Q ss_pred             CCCCc------eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942         116 VPMMK------LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT  155 (160)
Q Consensus       116 ~~~~~------lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~  155 (160)
                      +.-.+      -+=|+.  .-+++.+++++-+++.+|+..+.+.+.
T Consensus       121 VsGg~~~A~~GtLtimv--GG~~~~f~r~~pvl~~~g~~i~~~G~~  164 (286)
T COG2084         121 VSGGVPGAAAGTLTIMV--GGDAEAFERAKPVLEAMGKNIVHVGPV  164 (286)
T ss_pred             ccCCchhhhhCceEEEe--CCCHHHHHHHHHHHHHhcCceEEECCC
Confidence            33222      122332  447899999999999999999999654

>PRK06444 prephenate dehydrogenase; Provisional

Probab=92.98  E-value=1.3  Score=34.93  Aligned_cols=87  Identities=14%  Similarity=0.137  Sum_probs=56.3

Q ss_pred             cCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCC-CCCc-e--EEEec
Q psy3942          51 VSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPV-PMMK-L--LEVIR  126 (160)
Q Consensus        51 l~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~-~~~~-l--VEvv~  126 (160)
                      +++||+||=|+|.+.-  .++++++.      .+| +-.+|.-- .+...   ..+++|.|++.-| ...+ |  .=++.
T Consensus        29 ~~~~DlVilavPv~~~--~~~i~~~~------~~v-~Dv~SvK~-~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~   95 (197)
T PRK06444         29 IKKADHAFLSVPIDAA--LNYIESYD------NNF-VEISSVKW-PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI   95 (197)
T ss_pred             ECCCCEEEEeCCHHHH--HHHHHHhC------CeE-EeccccCH-HHHHh---cCCEEecCCCCCCCcCcccccceEEEE
Confidence            6899999999998753  34455543      133 34444444 23322   3489999997743 3221 1  22334


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         127 TNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       127 ~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      .+.++++.++.+.+|++  |..++..
T Consensus        96 ~~~~~~~~~~~~~~l~~--G~~~~~~  119 (197)
T PRK06444         96 NDISRDNYLNEINEMFR--GYHFVEM  119 (197)
T ss_pred             CCCCCHHHHHHHHHHHc--CCEEEEe
Confidence            77899999999999988  8877765

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=91.88  E-value=0.25  Score=36.94  Aligned_cols=52  Identities=17%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL   92 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l   92 (160)
                      ..+..++|++++++++|+|+=++|=.-  =++++++|....+++.+|.+.+=++
T Consensus        55 ~~i~~t~dl~~a~~~ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   55 ENIKATTDLEEALEDADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             TTEEEESSHHHHHTT-SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cccccccCHHHHhCcccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence            468889999889999999999998766  4799999999999999999988776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=91.83  E-value=0.17  Score=39.47  Aligned_cols=69  Identities=19%  Similarity=0.362  Sum_probs=43.8

Q ss_pred             cCceecCChhhhcCCCcEEEEecc--------------CChH----------------------HHHHHHHHHhhhCCCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV--------------ENMD----------------------IKHKLFTSVDKIAPAS   82 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~--------------E~l~----------------------~K~~v~~~l~~~~~~~   82 (160)
                      -+++.|+|.++|++|||+||-++-              ...-                      +=.++.++++++|| |
T Consensus        59 ~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~P-d  137 (183)
T PF02056_consen   59 LKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCP-D  137 (183)
T ss_dssp             SEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred             eEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCC-C
Confidence            367889999999999999997653              2222                      33478889999985 5


Q ss_pred             cEEe--ecCCCCCHHHHhcccCCC-CcEEEe
Q psy3942          83 AILA--SNTSSLSITEIASVTNRK-DKFVGL  110 (160)
Q Consensus        83 ~iia--snTS~l~i~~la~~~~~p-~r~ig~  110 (160)
                      +-+-  ||-+++-...+....  | .|++|+
T Consensus       138 Aw~iNytNP~~~vt~a~~r~~--~~~k~vGl  166 (183)
T PF02056_consen  138 AWLINYTNPMGIVTEALSRYT--PKIKVVGL  166 (183)
T ss_dssp             SEEEE-SSSHHHHHHHHHHHS--TTSEEEEE
T ss_pred             cEEEeccChHHHHHHHHHHhC--CCCCEEEE
Confidence            5444  554444333333222  5 688887

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=91.79  E-value=3.3  Score=34.79  Aligned_cols=105  Identities=14%  Similarity=0.202  Sum_probs=74.7

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC--
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM--  118 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~--  118 (160)
                      ++.+ +..++++++|+|+=++|..-. ...+.+++....+++. +.|-..++++..+...+...-+++-+=+=-|.+.  
T Consensus        48 v~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr  124 (314)
T TIGR00465        48 FKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVR  124 (314)
T ss_pred             CEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHH
Confidence            4544 455678999999999996533 4466677877777775 7888899999999877754345665555556653  


Q ss_pred             -----CceE-EEe-cCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         119 -----MKLL-EVI-RTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       119 -----~~lV-Evv-~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                           ..=+ =++ .+...+.+..+.+.+++..+|+.
T Consensus       125 ~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~  161 (314)
T TIGR00465       125 EEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG  161 (314)
T ss_pred             HHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence                 2222 232 55566788899999999999998

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=90.66  E-value=1.2  Score=36.73  Aligned_cols=109  Identities=14%  Similarity=0.167  Sum_probs=64.9

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEeecCCCCCHH---HHhcccC-CCCcEEEeecCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILASNTSSLSIT---EIASVTN-RKDKFVGLHFFN  114 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iiasnTS~l~i~---~la~~~~-~p~r~ig~Hf~~  114 (160)
                      .....+..++++++|+||=|++.+-.++.-++..  +-..+.++.++. ++|++++.   +++..+. +--+++.. +..
T Consensus        43 ~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vda-PVs  120 (292)
T PRK15059         43 AVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLDA-PVS  120 (292)
T ss_pred             CeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEEe-cCC
Confidence            3445556567789999999999997777655542  233345565543 23333333   5655543 23344442 222


Q ss_pred             C-CC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         115 P-VP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       115 P-~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      . +.   ...|. ++.  .-+++.+++++.+++.+|+..+.+.+
T Consensus       121 Gg~~~a~~g~l~-~~~--gG~~~~~~~~~p~l~~~g~~~~~~G~  161 (292)
T PRK15059        121 GGEIGAREGTLS-IMV--GGDEAVFERVKPLFELLGKNITLVGG  161 (292)
T ss_pred             CCHHHHhcCcEE-EEE--cCCHHHHHHHHHHHHHHcCCcEEeCC
Confidence            1 11   11122 222  34789999999999999999888865

>PRK15076 alpha-galactosidase; Provisional

Probab=90.34  E-value=0.6  Score=40.94  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=45.6

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCC-hH------------------------------------HHHHHHHHHhhhCCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVEN-MD------------------------------------IKHKLFTSVDKIAPA   81 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~-l~------------------------------------~K~~v~~~l~~~~~~   81 (160)
                      .+|+.++|+.++++|||+|++++.-. .+                                    +=+++.+++++.| |
T Consensus        61 ~~i~~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p  139 (431)
T PRK15076         61 AKITATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-P  139 (431)
T ss_pred             eEEEEECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-C
Confidence            47888999767999999999998653 11                                    2347778888888 5


Q ss_pred             CcEEe--ecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          82 SAILA--SNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        82 ~~iia--snTS~l~i~~la~~~~~p~r~ig~  110 (160)
                      +++|-  ||-..+-...+. .. .+.|++|+
T Consensus       140 ~a~iin~tNP~divt~~~~-~~-~~~rviG~  168 (431)
T PRK15076        140 DALLLNYVNPMAMNTWAMN-RY-PGIKTVGL  168 (431)
T ss_pred             CeEEEEcCChHHHHHHHHh-cC-CCCCEEEE
Confidence            56443  555544333332 22 23689887

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=90.18  E-value=1.2  Score=37.19  Aligned_cols=69  Identities=23%  Similarity=0.285  Sum_probs=46.6

Q ss_pred             CceecCChhhhcCCCcEEEEecc------CC-h-------HHHHHHHHHHhhhCCCCcEEeecCCCCCHHH--HhcccCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV------EN-M-------DIKHKLFTSVDKIAPASAILASNTSSLSITE--IASVTNR  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~------E~-l-------~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~--la~~~~~  103 (160)
                      +|+.+++++ ++++||+||=|+.      ++ .       ++=+++...|.+.+ |++++...++..++.-  +...++.
T Consensus        60 ~i~~~~d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g~  137 (309)
T cd05294          60 EIKISSDLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESGF  137 (309)
T ss_pred             EEEECCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcCC
Confidence            567777884 7999999999986      12 2       44667777888887 4776666666555442  3333444


Q ss_pred             -CCcEEEe
Q psy3942         104 -KDKFVGL  110 (160)
Q Consensus       104 -p~r~ig~  110 (160)
                       |.|++|+
T Consensus       138 ~~~~viG~  145 (309)
T cd05294         138 DKNRVFGL  145 (309)
T ss_pred             CHHHEeec
Confidence             4688987

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=89.59  E-value=6.6  Score=32.42  Aligned_cols=104  Identities=14%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEE
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLE  123 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVE  123 (160)
                      +++..+++..+|+|+=|+.  ...=.+++++|.. ..++.+|.|=..+++++.|..++. ..+++-+=+--|.-...-+=
T Consensus        53 ~~~~~~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t  128 (266)
T COG0345          53 TTDNQEAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVT  128 (266)
T ss_pred             cCcHHHHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcce
Confidence            5665567889999998872  2333466666766 678999999999999999999997 44555443333333333333


Q ss_pred             Ee-cCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         124 VI-RTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       124 vv-~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      .+ .+...+++-.+.+.+++..+|+..-+
T Consensus       129 ~i~~~~~~~~~~~~~v~~l~~~~G~v~~v  157 (266)
T COG0345         129 AISANANVSEEDKAFVEALLSAVGKVVEV  157 (266)
T ss_pred             eeecCccCCHHHHHHHHHHHHhcCCeEEe
Confidence            33 45788889999999999999996554

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.56  E-value=0.56  Score=36.35  Aligned_cols=58  Identities=14%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCC--------hHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHHH
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVEN--------MDIKHKLFTSVDKIAPASAILA-SNTSSLSITE   96 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~--------l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~~   96 (160)
                      ++++++++++++++++|+++=|||=.        +..=.+..+.|...+.++.++. -+|-..-.++
T Consensus        62 ~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~  128 (185)
T PF03721_consen   62 GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE  128 (185)
T ss_dssp             TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred             ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence            78999999987899999999999743        3444677888888887766544 4444444444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=88.37  E-value=1.6  Score=36.15  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             CceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhcccCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVTNR  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~~~  103 (160)
                      ++..++++ +++++||+||=++.=              |..+=+++..++.+.+ |++++.  ||-..+-..-+....+.
T Consensus        54 ~i~~~~~~-~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg~  131 (300)
T cd00300          54 TIVRGGDY-ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSGL  131 (300)
T ss_pred             eEEECCCH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhCc
Confidence            45546778 589999999988862              4445677888999998 666544  44333222222222333


Q ss_pred             -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                       |.|++|+                  .|..++...-..+++.+|..|
T Consensus       132 ~~~kviG~------------------gt~lDs~r~~~~la~~l~v~~  160 (300)
T cd00300         132 PKNRVIGS------------------GTLLDSARFRSLLAEKLDVDP  160 (300)
T ss_pred             CHHHEEec------------------CCcHHHHHHHHHHHHHhCCCc
Confidence             5788886                  455555555555556666544

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=88.20  E-value=3.7  Score=36.49  Aligned_cols=99  Identities=12%  Similarity=0.184  Sum_probs=63.5

Q ss_pred             ceecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--HHhcccCCCCcEEEeecCC-
Q psy3942          41 IKGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--EIASVTNRKDKFVGLHFFN-  114 (160)
Q Consensus        41 i~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--~la~~~~~p~r~ig~Hf~~-  114 (160)
                      +..++++++.++   ++|+|+=+++-.-.++. ++.+|-..+.++.||.-.+.+.+-.  +++..+..    -|+||.. 
T Consensus        51 i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~-vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~----~Gi~flda  125 (470)
T PTZ00142         51 VKGYHTLEELVNSLKKPRKVILLIKAGEAVDE-TIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE----KGILYLGM  125 (470)
T ss_pred             ceecCCHHHHHhcCCCCCEEEEEeCChHHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEcC
Confidence            556777766554   58999999888777764 5577877777777776444443333  33333321    2555544 


Q ss_pred             CCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         115 PVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       115 P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      |+.       ..+ . ++.|.  ++++++++..+++.++..
T Consensus       126 pVSGG~~gA~~G~-~-lm~GG--~~~a~~~~~piL~~ia~~  162 (470)
T PTZ00142        126 GVSGGEEGARYGP-S-LMPGG--NKEAYDHVKDILEKCSAK  162 (470)
T ss_pred             CCCCCHHHHhcCC-E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence            322       223 2 45444  688999999999999987

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=87.49  E-value=3.2  Score=35.33  Aligned_cols=114  Identities=14%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC------CCCHHHHhcccCCCCcEEEeec
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS------SLSITEIASVTNRKDKFVGLHF  112 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS------~l~i~~la~~~~~p~r~ig~Hf  112 (160)
                      ..|..++|++++++++|+|+-++|=.  .=+++.+++....++++++.+.|=      ...++++....-...+ +++ .
T Consensus        57 ~~l~at~Dl~~a~~~ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~-~~v-L  132 (329)
T COG0240          57 PNLKATTDLAEALDGADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP-IAV-L  132 (329)
T ss_pred             cccccccCHHHHHhcCCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe-EEE-E
Confidence            56888999999999999999999854  467888888888899999988774      4455666654322222 332 3


Q ss_pred             CCCCCCC----ce-EEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         113 FNPVPMM----KL-LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       113 ~~P~~~~----~l-VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      .-|.+..    .+ -+++- ...+++..+++..++..=-.++....|..|
T Consensus       133 SGPs~A~EVa~g~pta~~v-as~d~~~a~~v~~~f~~~~Frvy~~~Dv~G  181 (329)
T COG0240         133 SGPSFAKEVAQGLPTAVVV-ASNDQEAAEKVQALFSSPYFRVYTSTDVIG  181 (329)
T ss_pred             ECccHHHHHhcCCCcEEEE-ecCCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence            3444311    11 12222 345666767777766664445555566655

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=87.22  E-value=3.2  Score=36.57  Aligned_cols=68  Identities=13%  Similarity=0.267  Sum_probs=45.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCC----------------------------------hHHHHHHHHHHhhhCCCCcEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVEN----------------------------------MDIKHKLFTSVDKIAPASAIL   85 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~----------------------------------l~~K~~v~~~l~~~~~~~~ii   85 (160)
                      +|+.|+|..+|++|||+||-++--.                                  ..+=+++.+++++.| |++++
T Consensus        61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~l  139 (437)
T cd05298          61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWI  139 (437)
T ss_pred             EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEE
Confidence            6888999999999999999876422                                  123458888999998 55543


Q ss_pred             --eecCCCCCHHHHhcccCCC-CcEEEe
Q psy3942          86 --ASNTSSLSITEIASVTNRK-DKFVGL  110 (160)
Q Consensus        86 --asnTS~l~i~~la~~~~~p-~r~ig~  110 (160)
                        .||-..+-..-+...  .| .|++|+
T Consensus       140 in~tNP~~~vt~~~~~~--~~~~kviGl  165 (437)
T cd05298         140 LNYSNPAAIVAEALRRL--FPNARILNI  165 (437)
T ss_pred             EEecCcHHHHHHHHHHH--CCCCCEEEE
Confidence              356554332233222  33 588886

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=86.57  E-value=6.9  Score=34.84  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             CceecCChhhhcCCCcEEEEeccC-------------ChHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHH-HHhcccCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVE-------------NMDIKHKLFTSVDKIAPASAILA-SNTSSLSIT-EIASVTNR-  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E-------------~l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~-~la~~~~~-  103 (160)
                      ++++++++++++++||++|=||+=             |+.-=.+..++|.+.++++.++. .+|-..-.+ ++...+.. 
T Consensus        65 ~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~  144 (473)
T PLN02353         65 NLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN  144 (473)
T ss_pred             CEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhh
Confidence            599999997789999999999951             44456788888999988777544 444333333 33322211 


Q ss_pred             -CCcEEEeecCCCCCCCc---------eEEEecCCCC---CHHHHHHHHHHHHHcCC-eEEEe
Q psy3942         104 -KDKFVGLHFFNPVPMMK---------LLEVIRTNDT---SDATYNAVTEWGKSIGK-TTIVC  152 (160)
Q Consensus       104 -p~r~ig~Hf~~P~~~~~---------lVEvv~~~~T---~~~~~~~~~~~~~~lgk-~pv~v  152 (160)
                       +..=+.+ -|||-.+.+         .--||-|..+   +++..+.+.++++.+-+ .|+++
T Consensus       145 ~~g~~f~v-~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~  206 (473)
T PLN02353        145 SKGINFQI-LSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIIT  206 (473)
T ss_pred             CCCCCeEE-EECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEe
Confidence             1100111 134443322         2335544333   25678889999988643 55555

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=85.48  E-value=3.9  Score=33.69  Aligned_cols=106  Identities=10%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             ceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCCC-CCHHHHhcccCCCCcEEEeecCC-
Q psy3942          41 IKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTSS-LSITEIASVTNRKDKFVGLHFFN-  114 (160)
Q Consensus        41 i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS~-l~i~~la~~~~~p~r~ig~Hf~~-  114 (160)
                      .+.+.+.++.+.+   +|+|+=|+|-+-.++ +++..+-...+++.++. ++|++ -...+++..+...    |.+|.. 
T Consensus        44 ~~~~~s~~~~~~~~~~advVi~~vp~~~~~~-~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vda  118 (299)
T PRK12490         44 ITARHSLEELVSKLEAPRTIWVMVPAGEVTE-SVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDC  118 (299)
T ss_pred             CeecCCHHHHHHhCCCCCEEEEEecCchHHH-HHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeC
Confidence            4556677555554   699999999886655 44566666666666554 33333 3445666655322    345554 


Q ss_pred             CCCCC------ceEEEecCCCCCHHHHHHHHHHHHHcCC---eEEEecC
Q psy3942         115 PVPMM------KLLEVIRTNDTSDATYNAVTEWGKSIGK---TTIVCKD  154 (160)
Q Consensus       115 P~~~~------~lVEvv~~~~T~~~~~~~~~~~~~~lgk---~pv~v~d  154 (160)
                      |+.-.      ... ++.  .-+++++++++.+++.+|+   ..+.+.+
T Consensus       119 pV~G~~~~a~~g~~-~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~G~  164 (299)
T PRK12490        119 GTSGGVWGLRNGYC-LMV--GGDKEIYDRLEPVFKALAPEGPGYVHAGP  164 (299)
T ss_pred             CCCCCHHHHhcCCe-EEe--cCCHHHHHHHHHHHHHhcCcCCcEEEECC
Confidence            22211      112 332  2368899999999999997   5566654

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=85.34  E-value=3.3  Score=34.16  Aligned_cols=107  Identities=11%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             CceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCCCCC-HHHHhcccCCCCcEEEeecCC
Q psy3942          40 RIKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTSSLS-ITEIASVTNRKDKFVGLHFFN  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS~l~-i~~la~~~~~p~r~ig~Hf~~  114 (160)
                      ..+..++.++.++.   +|+|+=++|-.-.++ +++..+...++++.++. ++|++.. ..+++..+...    |++|..
T Consensus        43 g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~-~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~d  117 (301)
T PRK09599         43 GATGADSLEELVAKLPAPRVVWLMVPAGEITD-ATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVD  117 (301)
T ss_pred             CCeecCCHHHHHhhcCCCCEEEEEecCCcHHH-HHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEe
Confidence            34556666544444   699999999875554 45566766666666554 3333332 33455544322    455544


Q ss_pred             -CCCCC------ceEEEecCCCCCHHHHHHHHHHHHHcCC----eEEEecC
Q psy3942         115 -PVPMM------KLLEVIRTNDTSDATYNAVTEWGKSIGK----TTIVCKD  154 (160)
Q Consensus       115 -P~~~~------~lVEvv~~~~T~~~~~~~~~~~~~~lgk----~pv~v~d  154 (160)
                       |+.-.      .+. ++.|  -+++++++++.+++.+++    ..+.+.+
T Consensus       118 apvsG~~~~a~~g~~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~  165 (301)
T PRK09599        118 VGTSGGVWGLERGYC-LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP  165 (301)
T ss_pred             CCCCcCHHHHhcCCe-EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC
Confidence             32211      121 3333  578999999999999999    5566654

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=85.16  E-value=7.5  Score=32.02  Aligned_cols=100  Identities=7%  Similarity=0.010  Sum_probs=60.5

Q ss_pred             hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC--CHHHHhcccC-CCCcEEEeecCCCCC--CCceEEE
Q psy3942          50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL--SITEIASVTN-RKDKFVGLHFFNPVP--MMKLLEV  124 (160)
Q Consensus        50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l--~i~~la~~~~-~p~r~ig~Hf~~P~~--~~~lVEv  124 (160)
                      .+.++|+|+=++|-. . =++++.++...++++.++...+.+.  ...+++..+. +.-+++.++-...+.  ...+.=.
T Consensus        56 ~~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~  133 (298)
T TIGR00872        56 RLSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFM  133 (298)
T ss_pred             hcCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeee
Confidence            456789999999988 4 4566788888887777666544433  3344444442 223455554332221  1122222


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCe---EEEecC
Q psy3942         125 IRTNDTSDATYNAVTEWGKSIGKT---TIVCKD  154 (160)
Q Consensus       125 v~~~~T~~~~~~~~~~~~~~lgk~---pv~v~d  154 (160)
                      +.   -+++.++.+..+++.+++.   .+.+.+
T Consensus       134 ~g---G~~~~~~~~~~~l~~~~~~~~~~~~~G~  163 (298)
T TIGR00872       134 IG---GDGEAFARAEPLFADVAPEEQGYLYCGP  163 (298)
T ss_pred             eC---CCHHHHHHHHHHHHHhcCcCCCEEEECC
Confidence            22   3688999999999999873   344543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=84.94  E-value=1.1  Score=39.13  Aligned_cols=56  Identities=16%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCC--------hHHHHHHHHHHhhhCCCCcEEeecCCCCCHH
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVEN--------MDIKHKLFTSVDKIAPASAILASNTSSLSIT   95 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~--------l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~   95 (160)
                      +|+++|+|++++++++|+++=|++=+        +..=..+.+++-.+.+..+++. +-|+.|+.
T Consensus        62 gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvG  125 (414)
T COG1004          62 GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVG  125 (414)
T ss_pred             CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCC
Confidence            57999999998999999999999753        4445677888888887755444 34566654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=84.70  E-value=10  Score=30.33  Aligned_cols=110  Identities=16%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC----------------CCCHHHHh-ccc
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS----------------SLSITEIA-SVT  101 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS----------------~l~i~~la-~~~  101 (160)
                      .+|+..+.. +|++.+|+|+=|||  ++-=.++.+++..... +.|+.+.|=                .-|.+++. +.+
T Consensus        47 ~~i~~~~~~-dA~~~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~l  122 (211)
T COG2085          47 PLITGGSNE-DAAALADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLL  122 (211)
T ss_pred             cccccCChH-HHHhcCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHC
Confidence            445555555 68999999999997  5566788888888776 555543332                23344443 344


Q ss_pred             CCCCcEEEe-ecCCCCCCCc-----eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         102 NRKDKFVGL-HFFNPVPMMK-----LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       102 ~~p~r~ig~-Hf~~P~~~~~-----lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      .++ |++.. |-.....+-.     .-=.+.=..-|.+..+.+.+|++++|..|+-+.
T Consensus       123 p~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G  179 (211)
T COG2085         123 PGA-KVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAG  179 (211)
T ss_pred             CCc-chhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecc
Confidence            444 45443 2111111111     111122235577899999999999999999863

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.44  E-value=2.2  Score=35.99  Aligned_cols=62  Identities=15%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhcccC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVTN  102 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~~  102 (160)
                      +.+++++++.++++|+|+-++|...+.+.-+.+++-+.++++++|...+-+--+  ..|...+.
T Consensus       186 ~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        186 LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            445668878899999999999999999999999999999999988876655444  45656554

>PLN00135 malate dehydrogenase

Probab=84.43  E-value=3  Score=35.01  Aligned_cols=71  Identities=8%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             cCceecCC-hhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhccc
Q psy3942          39 SRIKGSSK-VEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVT  101 (160)
Q Consensus        39 ~~i~~~~~-~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~  101 (160)
                      ..++.+++ + +++++||+||=+..=              |.++=+++..+|.+.+.|++++..-|  -.+-..-+...+
T Consensus        44 ~~i~~~~~~y-~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~s  122 (309)
T PLN00135         44 KGVVATTDVV-EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFA  122 (309)
T ss_pred             CCcEecCCHH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHc
Confidence            35665566 7 589999999977643              33455677888888777888665433  222222333334


Q ss_pred             CC-CCcEEEe
Q psy3942         102 NR-KDKFVGL  110 (160)
Q Consensus       102 ~~-p~r~ig~  110 (160)
                      +. |.|++|+
T Consensus       123 g~~~~~vig~  132 (309)
T PLN00135        123 PSIPEKNITC  132 (309)
T ss_pred             CCCCccEEEe
Confidence            43 3466665

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=84.36  E-value=2.8  Score=30.66  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=43.5

Q ss_pred             CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh--CCCCcEEeecCCCCCHHHHhcccCCCCcEEEeec
Q psy3942          45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI--APASAILASNTSSLSITEIASVTNRKDKFVGLHF  112 (160)
Q Consensus        45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~--~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf  112 (160)
                      .++.+.+.++|+++=|+|++  .=.++.++|...  ..++.++.=.+-++++.-|.....+--.+..+|+
T Consensus        60 ~~~~~~~~~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   60 LDLEEILRDADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             --TTGGGCC-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             cccccccccCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            34556789999999999999  356788888887  7788888877777777777766666667788884

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=82.69  E-value=9.5  Score=31.28  Aligned_cols=102  Identities=17%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhc---ccCCCC-cEEEeecCCCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIAS---VTNRKD-KFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~---~~~~p~-r~ig~Hf~~P~  116 (160)
                      |.+|+|-.+++.|+|+||-=.|-- ...-.+++++-.-.++++|+ +++-++|.+....   ...|-. ++-..|+-.-|
T Consensus       127 ~~vttddreavedad~iitwlpkg-~~qpdiikkfiddipegaiv-thactipttkf~kifed~gredlnvtsyhpg~vp  204 (343)
T COG4074         127 IVVTTDDREAVEDADMIITWLPKG-GVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP  204 (343)
T ss_pred             eEEecCcHhhhcCCCeEEEeccCC-CCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence            555555557999999999766532 23446777777777787765 6778899886554   444422 55666665544


Q ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHHc
Q psy3942         117 PMMKLLEVIRTNDTSDATYNAVTEWGKSI  145 (160)
Q Consensus       117 ~~~~lVEvv~~~~T~~~~~~~~~~~~~~l  145 (160)
                      .+.--|=|.. .+.|+++++.+.++.+..
T Consensus       205 emkgqvyiae-gyaseeavn~lyelg~ka  232 (343)
T COG4074         205 EMKGQVYIAE-GYASEEAVNALYELGEKA  232 (343)
T ss_pred             cccCcEEEec-ccccHHHHHHHHHHHHHh
Confidence            4444455554 567899999999988653

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=82.26  E-value=2.5  Score=36.04  Aligned_cols=112  Identities=11%  Similarity=0.051  Sum_probs=70.6

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--------HHhc-ccCCCCcEEE
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--------EIAS-VTNRKDKFVG  109 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--------~la~-~~~~p~r~ig  109 (160)
                      .+|+.++|+++++.++|+|+=|+|-..  =++++++|....+++.++.|.|-++...        ++.. .+..  ++..
T Consensus        68 ~~i~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~~  143 (342)
T TIGR03376        68 ANLVAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCGV  143 (342)
T ss_pred             CCeEEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeEE
Confidence            468889999888999999999997544  5678888988888888888877666544        3322 2222  2221


Q ss_pred             eecCCCCCC-----CceEEEecCCCCC----HHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         110 LHFFNPVPM-----MKLLEVIRTNDTS----DATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       110 ~Hf~~P~~~-----~~lVEvv~~~~T~----~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                        ..-|.+.     ...-+++-+. .+    .+....+.+++..=-..+....|..|
T Consensus       144 --lsGP~~A~Eva~~~pt~~~ia~-~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G  197 (342)
T TIGR03376       144 --LSGANLANEVAKEKFSETTVGY-RDPADFDVDARVLKALFHRPYFRVNVVDDVAG  197 (342)
T ss_pred             --eeCcchHHHHHcCCCceEEEEe-CCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence              2334331     1122333322 24    67777777777665555555567665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=82.18  E-value=6.4  Score=33.09  Aligned_cols=89  Identities=10%  Similarity=0.021  Sum_probs=54.3

Q ss_pred             ecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCc--EEeecCCCCCHHHH-hcccCCCC
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASA--ILASNTSSLSITEI-ASVTNRKD  105 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~--iiasnTS~l~i~~l-a~~~~~p~  105 (160)
                      .+++++++++|||+||=+..=              |.++=+++..+|.+.+++++  |++||--.+-..-+ ...++.|.
T Consensus        50 ~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~  129 (313)
T TIGR01756        50 VTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSA  129 (313)
T ss_pred             ecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCH
Confidence            356775689999999954321              23356778888999998877  34455333322222 23445565


Q ss_pred             cEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       106 r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      +++|+                  .|.-++...-..+++.+|-.|
T Consensus       130 ~vig~------------------gt~LDsaR~r~~la~~l~v~~  155 (313)
T TIGR01756       130 ENFSS------------------LCMLDHNRAVSRIASKLKVPV  155 (313)
T ss_pred             HHEEe------------------cccHHHHHHHHHHHHHhCcCh
Confidence            56664                  566666555555667777654

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=80.76  E-value=14  Score=33.18  Aligned_cols=102  Identities=10%  Similarity=0.107  Sum_probs=60.7

Q ss_pred             eecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCc-EEeecCCCCC-HHHHhcccC-CCCcEEEeecCC-
Q psy3942          42 KGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASA-ILASNTSSLS-ITEIASVTN-RKDKFVGLHFFN-  114 (160)
Q Consensus        42 ~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~-i~~la~~~~-~p~r~ig~Hf~~-  114 (160)
                      ....+.++.++   .+|+||=+++.+-.++.=+ ..|-..+.++. +|=..|++.. ..+++..+. +--+++++--.. 
T Consensus        58 ~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         58 YGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             ccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence            34556655444   4999999999999887644 55555565554 4445555443 335555443 223444442221 


Q ss_pred             --CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         115 --PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       115 --P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                        .+...+.  ++.|.  ++++++++..+++.++..
T Consensus       137 ~~gA~~G~~--im~GG--~~~a~~~v~pvL~~ia~k  168 (493)
T PLN02350        137 EEGARNGPS--LMPGG--SFEAYKNIEDILEKVAAQ  168 (493)
T ss_pred             HHHhcCCCe--EEecC--CHHHHHHHHHHHHHHhhh
Confidence              1113332  45443  788999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		5e-35
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		5e-35
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		9e-35
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		1e-34
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		1e-34
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		1e-34
3had_A	308	Biochemical Characterization And Structure Determin		1e-34
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		2e-34
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		2e-34
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		5e-34
2hdh_A	293	Biochemical Characterization And Structure Determin		1e-33
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		7e-24
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		2e-21
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		2e-19
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		5e-19
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		5e-19
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		6e-19
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		3e-18
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		7e-17
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		2e-15
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		5e-11
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		6e-07

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  142 bits (358), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           +SL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 ASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIV+N+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL++VI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 92/129 (71%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 99  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 158
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+ KL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 159 SSLQITSIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHP 218
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 219 VSCKDTPGF 227

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 92/129 (71%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
            SL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 137 CSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  139 bits (351), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 91/129 (70%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K +LF  +DK A    I ASNT
Sbjct: 77  GDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNT 136
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT +A+ T R+D+F GLHFFNPVP+MKL+EV++T  TS  T  ++ ++ K++GK  
Sbjct: 137 SSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHP 196
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 197 VSCKDTPGF 205

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 91/129 (70%)
Query: 30  GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
           G++ +  TLS I  S+     V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNT
Sbjct: 66  GDEFVAKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNT 125
Query: 90  SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
           SSL IT IA+ T R+D+F GLHFFNPVP+ KL+EVI+T  TS  T+ ++ ++ K++GK  
Sbjct: 126 SSLQITSIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHP 185
Query: 150 IVCKDTPGF 158
           + CKDTPGF
Sbjct: 186 VSCKDTPGF 194

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 15/162 (9%)
Query: 8   QEEGEKLIDSTLSRIKGS----------SKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLV 57
           +E  EK +++ + R+K +          S+E+ EK    T+S +KGS   E S    D+V
Sbjct: 341 KEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEK----TMSLLKGSLDYE-SFRDVDMV 395
Query: 58  IEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP 117
           IEA++EN+ +K ++F  ++K  P   ILASNTS++ + +I   T  +D+ VG HFF+P  
Sbjct: 396 IEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAH 455
Query: 118 MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
           +M LLE++RTN TS      + + GK I KT +V  +  GF 
Sbjct: 456 IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFA 497

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 64/104 (61%)
Query: 55  DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
           DLV+EA+VEN  +K  +   V+      AILASNTS++SI+ +A    R + FVG+HFFN
Sbjct: 395 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFN 454
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           PV MM L+EVIR   +SD        + K +GK  IV  D PGF
Sbjct: 455 PVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF 498

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 37  TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE 96
           TL R+   + +  +++ +DLVIEA  E +++K  LF  + ++ P   +L +NTSS+SIT 
Sbjct: 69  TLKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITA 127
Query: 97  IASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156
           IA+     ++  GLHFFNP P+MKL+EV+    T+      + E   S GK  + C  TP
Sbjct: 128 IAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP 187
Query: 157 GF 158
           GF
Sbjct: 188 GF 189

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 9   EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
           +  +K+I  TL +    + + G+      L R   S+K    +S  DLV+EA+ E+M++K
Sbjct: 353 DAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLK 408
Query: 69  HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
            K+F  +  +    A L +NTS+L++ +IAS T+R    +G HFF+P  +M+LLEVI + 
Sbjct: 409 KKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 468
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
            +S  T   V    K IGK  +V  +  GF
Sbjct: 469 YSSPTTIATVMSLSKKIGKIGVVVGNCYGF 498

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 9   EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
           +  +K+I  TL +    + + G+      L R   S+K    +S  DLV+EA+ E+M++K
Sbjct: 353 DAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLK 408
Query: 69  HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
            K+F  +  +    A L +NTS+L++ +IAS T+R    +G HFF+P  +M+LLEVI + 
Sbjct: 409 KKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 468
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
            +S  T   V    K IGK  +V  +  GF
Sbjct: 469 YSSPTTIATVMSLSKKIGKIGVVVGNCYGF 498

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 9   EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
           +  +K+I  TL +    + + G+      L R   S+K    +S  DLV+EA+ E+M++K
Sbjct: 338 DAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLK 393
Query: 69  HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
            K+F  +  +    A L +NTS+L++ +IAS T+R    +G HFF+P  +M+LLEVI + 
Sbjct: 394 KKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 453
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
            +S  T   V    K IGK  +V  +  GF
Sbjct: 454 YSSPTTIATVMSLSKKIGKIGVVVGNCYGF 483

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 12  EKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKL 71
           +K+I  TL +    + + G+      L R   S+K    +S  DLV+EA+ E+M++K K+
Sbjct: 77  KKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLKKKV 132
Query: 72  FTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTS 131
           F  +  +    A L +NTS+L++ +IAS T+R    +G HFF+P  +M+LLEVI +  +S
Sbjct: 133 FAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSS 192
Query: 132 DATYNAVTEWGKSIGKTTIVCKDTPGF 158
             T   V    K IGK  +V  +  GF
Sbjct: 193 PTTIATVMSLSKKIGKIGVVVGNCYGF 219

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 67/116 (57%)
Query: 38  LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97
           L  I+ S  +  +V  +DLVIEA+ E++D+K  ++T + ++APA  I A+N+S+L  +++
Sbjct: 70  LGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL 129
Query: 98  ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153
              T R DKF+ LHF N V +    EV+ T  T    Y  V E+  +IG   I  K
Sbjct: 130 VGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELK 185

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 31  EKLIDLTLSRIKGSSKVE---DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS 87
           ++L D  + +I  + K+      +S  DL++E+++E+M +K +LF +++ I  ++ I  +
Sbjct: 105 KRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGT 164
Query: 88  NTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGK 147
           NTSSL + EI+SV       VG+HFFNP  +++L+E+I  + TS        +  +SI K
Sbjct: 165 NTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKK 224
Query: 148 TTIVCKDTPGF 158
             ++  +   F
Sbjct: 225 LPVLVGNCKSF 235

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 31  EKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS 90
           E++ +  LS+I+ ++ +E  V   D+V EA+ E+++ K ++   V+++   +A L SNTS
Sbjct: 52  EQIPEELLSKIEFTTTLE-KVKDCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTS 108
Query: 91  SLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150
            +S+ +IA   +   +F+G+H+ NP  +  L+E++ +  T   T   V  + + +GK  +
Sbjct: 109 VISVDDIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVV 168
Query: 151 VCK 153
           VCK
Sbjct: 169 VCK 171

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 34  IDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS 93
           ++  LS I G   ++++V  +  + E + E++++K K+F  +D I     IL+S+TS L 
Sbjct: 65  VEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLM 124
Query: 94  ITEI-ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI-V 151
            +++ A + + K   V  H  NP   + L+E++   +T+  T +      K IG+  + V
Sbjct: 125 PSKLFAGLVHVKQCIVA-HPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRV 183
Query: 152 CKDTPGFT 159
            K+  GF 
Sbjct: 184 QKEVAGFV 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	4e-76
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	3e-69
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	1e-25
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	4e-62
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	2e-56
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	4e-55
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	4e-55
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-54
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	4e-54
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	8e-54
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  227 bits (582), Expect = 4e-76
 Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 15/173 (8%)

Query: 1   VAAQAGNQ-----------EEGEKLIDSTLSRI--KGSSKEE--GEKLIDLTLSRIKGSS 45
           VAA  G+             + +K I+ +L ++  K  ++    G++ ++ TLS I  S+
Sbjct: 33  VAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92

Query: 46  KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKD 105
                V  +DLV+EAIVEN+ +K++LF  +DK A    I ASNTSSL IT IA+ T R+D
Sbjct: 93  DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQD 152

Query: 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           +F GLHFFNPVP+MKL+EVI+T  TS  T+ ++ ++ K++GK  + CKDTPGF
Sbjct: 153 RFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  216 bits (551), Expect = 3e-69
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 1   VAAQAGNQ-----------EEGEKLIDSTLSRI--KGSSKEEGEKLIDLTLSRIKGSSKV 47
           VAA  G+Q                 I + L+    +G    E     + TL R+   + +
Sbjct: 23  VAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE-TC--ERTLKRLIPVTDI 79

Query: 48  EDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKF 107
              ++ +DLVIEA  E +++K  LF  + ++ P   +L +NTSS+SIT IA+     ++ 
Sbjct: 80  HA-LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERV 138

Query: 108 VGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
            GLHFFNP P+MKL+EV+    T+      + E   S GK  + C  TPGF
Sbjct: 139 AGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGF 189

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  100 bits (251), Expect = 1e-25
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 57  VIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPV 116
           V    V +     K+    D +     +L   T   +   +A    R    +        
Sbjct: 293 VGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMA---- 348

Query: 117 PMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
              K++ +       D+       + +  GKT +   D PG 
Sbjct: 349 --GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGM 388

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  192 bits (489), Expect = 4e-62
 Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 1   VAAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLI-DLTLSRIKGSSKVEDSVSQSDLVIE 59
           +A  +          +  L  +   + E   + I +  LS+I+ ++ +E  V   D+V+E
Sbjct: 29  IAIASK--------HEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVME 79

Query: 60  AIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM 119
           A+ E+++ K ++   V+++   +A L SNTS +S+ +IA   +   +F+G+H+ NP  +M
Sbjct: 80  AVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVM 137

Query: 120 KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156
            L+E++ +  T   T   V  + + +GK  +VCK   
Sbjct: 138 PLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS 174

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  182 bits (463), Expect = 2e-56
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 18/170 (10%)

Query: 1   VAAQAG--------NQEEG----EKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVE 48
               AG        N++      E +     S  K  + +  EK+     + +K +S   
Sbjct: 72  CFGLAGIETFLVVRNEQRCKQELEVMYAREKSF-KRLNDKRIEKI----NANLKITSDFH 126

Query: 49  DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFV 108
             +S  DL++E+++E+M +K +LF +++ I  ++ I  +NTSSL + EI+SV       V
Sbjct: 127 K-LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLV 185

Query: 109 GLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           G+HFFNP  +++L+E+I  + TS        +  +SI K  ++  +   F
Sbjct: 186 GIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSF 235

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  183 bits (466), Expect = 4e-55
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 7/157 (4%)

Query: 2   AAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAI 61
             + G   E  KL+   + +    +  +  ++    L+ I+ +    D     DLV+EA+
Sbjct: 349 GIEQG-LAEAAKLLVGRVDK-GRMTPAKMAEV----LNGIRPTLSYGD-FGNVDLVVEAV 401

Query: 62  VENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKL 121
           VEN  +K  +   V+      AILASNTS++SI+ +A    R + FVG+HFFNPV MM L
Sbjct: 402 VENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPL 461

Query: 122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           +EVIR   +SD        + K +GK  IV  D PGF
Sbjct: 462 VEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF 498

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  178 bits (454), Expect = 4e-55
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 2   AAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAI 61
              A  ++     ++   SR   + +            +++ SS  ++ +S  DLV+EA+
Sbjct: 72  QLDAA-KKIITFTLEKEASRAHQNGQAS-------AKPKLRFSSSTKE-LSTVDLVVEAV 122

Query: 62  VENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKL 121
            E+M++K K+F  +  +    A L +NTS+L++ +IAS T+R    +G HFF+P  +M+L
Sbjct: 123 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 182

Query: 122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           LEVI +  +S  T   V    K IGK  +V  +  GF
Sbjct: 183 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF 219

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  182 bits (463), Expect = 1e-54
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 7/157 (4%)

Query: 2   AAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAI 61
             +AG     +  + S + +    S+E+ EK     +S +KGS   E      D+VIEA+
Sbjct: 347 FLEAG-IGRVKANLQSRVRK-GSMSQEKFEKT----MSLLKGSLDYES-FRDVDMVIEAV 399

Query: 62  VENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKL 121
           +EN+ +K ++F  ++K  P   ILASNTS++ + +I   T  +D+ VG HFF+P  +M L
Sbjct: 400 IENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPL 459

Query: 122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           LE++RTN TS      + + GK I KT +V  +  GF
Sbjct: 460 LEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF 496

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  179 bits (457), Expect = 8e-54
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 2   AAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAI 61
              A  ++     ++   SR       +          +++ SS  ++ +S  DLV+EA+
Sbjct: 351 QLDAA-KKIITFTLEKEASR--AHQNGQ-----ASAKPKLRFSSSTKE-LSTVDLVVEAV 401

Query: 62  VENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKL 121
            E+M++K K+F  +  +    A L +NTS+L++ +IAS T+R    +G HFF+P  +M+L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461

Query: 122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
           LEVI +  +S  T   V    K IGK  +V  +  GF
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF 498

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 63 ENMDIKHKLFTSVDKIAPASA-ILASNTS 90
          E   +K KL  S+   A  SA  LA   +
Sbjct: 18 EKQALK-KLQASLKLYADDSAPALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.98
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.97
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.97
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.97
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.41
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.37
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.21
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.15
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.02
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.98
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.75
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.71
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.65
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.64
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.63
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.61
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.61
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.55
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.53
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.53
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.5
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.47
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.45
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.44
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.43
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.33
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.33
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.32
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.32
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.2
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.15
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.14
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.13
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.1
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.1
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.08
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.05
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.0
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.97
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.96
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.96
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.94
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.93
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.89
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.89
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.81
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.81
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.81
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.8
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.61
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.6
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.55
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.53
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.5
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.46
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.41
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.34
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.32
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.3
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.26
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.24
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.05
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.04
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.02
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	96.98
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.88
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.86
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.84
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.66
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.6
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.58
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.48
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.42
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.38
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.32
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.32
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.21
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.19
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.04
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.99
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.94
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.73
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	95.68
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.52
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.52
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.48
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.32
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	95.31
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.27
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.19
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.15
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	94.82
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.79
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	94.78
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.49
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	94.25
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.79
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.48
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.31
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	93.28
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.71
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.62
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	91.82
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	90.25
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.07
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	89.73
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	88.57
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	87.17
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	84.79
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	83.24
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	82.71
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	82.06
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	80.58

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=1.7e-49  Score=330.49  Aligned_cols=160  Identities=23%  Similarity=0.328  Sum_probs=149.0

Q ss_pred             ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      +||++||+           ++++++|++.++++.+++........++.+++|++++|+++++++||||||||||++++|+
T Consensus        24 ~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~  103 (319)
T 3ado_A           24 LFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKR  103 (319)
T ss_dssp             HHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTTEEEEEECCCSCHHHHH
T ss_pred             HHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhccCcEEeeccccHHHHHH
Confidence            37889999           7889999999999888755443323678899999999998899999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++|+++|+|+||||||||+|++++|++.+.||+||+|+|||||||.|||||||+|+.|++++++++.+|++++||+|
T Consensus       104 ~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p  183 (319)
T 3ado_A          104 KIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP  183 (319)
T ss_dssp             HHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe-cCcCcccC
Q psy3942         150 IVC-KDTPGFTP  160 (160)
Q Consensus       150 v~v-~d~pGfi~  160 (160)
                      |++ +|+||||+
T Consensus       184 v~v~kd~pGFi~  195 (319)
T 3ado_A          184 VRVLKEIDGFVL  195 (319)
T ss_dssp             EECSSCCTTTTH
T ss_pred             CCcCCCCCCEeH
Confidence            976 99999984

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=9.6e-44  Score=322.71  Aligned_cols=155  Identities=34%  Similarity=0.535  Sum_probs=141.9

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ||++|++           ++++++|.+.+++.+.+.....   .+..+.++++++++ +++++||||||||+|++++|++
T Consensus       335 ~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~-~~l~~aDlVIEAV~E~l~iK~~  410 (742)
T 3zwc_A          335 FARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG---QASAKPKLRFSSST-KELSTVDLVVEAVFEDMNLKKK  410 (742)
T ss_dssp             HHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCEEEESCG-GGGGSCSEEEECCCSCHHHHHH
T ss_pred             HHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccc---hhhhhhhhcccCcH-HHHhhCCEEEEeccccHHHHHH
Confidence            7889999           7788889888888766532221   22456899999999 5799999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+++|+|+||||||||+|||++|++.+.||+||+|+|||||++.|||||||+|++|++++++++.+|++++||+||
T Consensus       411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV  490 (742)
T 3zwc_A          411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  490 (742)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+||||.
T Consensus       491 ~vkd~pGFi~  500 (742)
T 3zwc_A          491 VVGNCYGFVG  500 (742)
T ss_dssp             ECCCSTTTTH
T ss_pred             ccCCCCCccH
Confidence            9999999983

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=5.1e-37  Score=266.01  Aligned_cols=156  Identities=28%  Similarity=0.485  Sum_probs=145.4

Q ss_pred             hhhCCcc--------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHH
Q psy3942           2 AAQAGNQ--------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT   73 (160)
Q Consensus         2 ~a~~G~~--------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~   73 (160)
                      ++++|++        +++..+|++.++++++++.....+ .+..+++|++++|++ ++++||+|||||||++++|+++|+
T Consensus        73 la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~-~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~  150 (460)
T 3k6j_A           73 FGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKR-IEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFA  150 (460)
T ss_dssp             HHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHH-HHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHH
T ss_pred             HHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHH
Confidence            5778888        677888999999988876544333 678899999999995 899999999999999999999999


Q ss_pred             HHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942          74 SVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus        74 ~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      +|++.+++++||+||||++|+++|++.+.+|+|++|+|||||++.|+||||++|..|++++++++..|++.+||+||+++
T Consensus       151 ~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~  230 (460)
T 3k6j_A          151 NLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVG  230 (460)
T ss_dssp             HHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred             HHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCccc
Q psy3942         154 DTPGFT  159 (160)
Q Consensus       154 d~pGfi  159 (160)
                      |.||||
T Consensus       231 d~pGfi  236 (460)
T 3k6j_A          231 NCKSFV  236 (460)
T ss_dssp             SCCHHH
T ss_pred             cccHHH
Confidence            999997

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=7.9e-34  Score=247.32  Aligned_cols=157  Identities=35%  Similarity=0.557  Sum_probs=144.0

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+||+           +++.++|.+.++++++++.....+ .+..+++|+++++++ ++++||+||||+||++++|++
T Consensus        24 la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~~~~aDlVIeAVpe~~~vk~~  101 (483)
T 3mog_A           24 AASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAET-CERTLKRLIPVTDIH-ALAAADLVIEAASERLEVKKA  101 (483)
T ss_dssp             HHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHH-HHHHHHTEEEECCGG-GGGGCSEEEECCCCCHHHHHH
T ss_pred             HHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhceeEeCCHH-HhcCCCEEEEcCCCcHHHHHH
Confidence            5677888           667777888888887776544333 678899999999994 799999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.+++++||+||||++++++|++.+.+|+|++|+|||||++.++|+||++|..|++++++++..|++.+||+|+
T Consensus       102 v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v  181 (483)
T 3mog_A          102 LFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPV  181 (483)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcccC
Q psy3942         151 VCKDTPGFTP  160 (160)
Q Consensus       151 ~v~d~pGfi~  160 (160)
                      +++|+|||+.
T Consensus       182 ~v~d~~Gfi~  191 (483)
T 3mog_A          182 RCHSTPGFIV  191 (483)
T ss_dssp             EEESCTTTTH
T ss_pred             EEeccCcchH
Confidence            9999999973

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-32  Score=249.69  Aligned_cols=156  Identities=35%  Similarity=0.566  Sum_probs=140.6

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+||+           ++++.+|+++++++++++.....+ .+..+++|++++|+ +++++||+|||||||++++|++
T Consensus       331 la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~-~~~~~~~i~~~~d~-~~~~~aDlVIeaVpe~~~vk~~  408 (725)
T 2wtb_A          331 LILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEK-FEKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQ  408 (725)
T ss_dssp             HHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTH-HHHTTTSEEEESSS-GGGTTCSEEEECCCSCHHHHHH
T ss_pred             HHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHhcceEEeCCH-HHHCCCCEEEEcCcCCHHHHHH
Confidence            5778888           556777888888887765443322 66788999999999 5899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.+++++||+||||++++++|++.+.+|+|++|+|||||++.|++|||++|+.|++++++++..|++.+||+|+
T Consensus       409 v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v  488 (725)
T 2wtb_A          409 IFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV  488 (725)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCccc
Q psy3942         151 VCKDTPGFT  159 (160)
Q Consensus       151 ~v~d~pGfi  159 (160)
                      +++|.|||+
T Consensus       489 ~v~d~~Gfi  497 (725)
T 2wtb_A          489 VVGNCTGFA  497 (725)
T ss_dssp             EEESSTTTT
T ss_pred             EECCCccHH
Confidence            999999997

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=3.2e-32  Score=246.54  Aligned_cols=156  Identities=37%  Similarity=0.556  Sum_probs=143.1

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+||+           ++++.+|++.++++++++.....+ .+..+++|++++|+ +++++||+|||||+|++++|++
T Consensus       333 la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~-~~~~~~~i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~  410 (715)
T 1wdk_A          333 SASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAK-MAEVLNGIRPTLSY-GDFGNVDLVVEAVVENPKVKQA  410 (715)
T ss_dssp             HHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHEEEESSS-TTGGGCSEEEECCCSCHHHHHH
T ss_pred             HHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHhcCeEEECCH-HHHCCCCEEEEcCCCCHHHHHH
Confidence            5678888           556778888898888776543322 56678899999999 6899999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.+++++||+||||++++++|++.+.+|+|++|+|||||++.|++|||++|+.|++++++++..|++.+||+|+
T Consensus       411 v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v  490 (715)
T 1wdk_A          411 VLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI  490 (715)
T ss_dssp             HHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCccc
Q psy3942         151 VCKDTPGFT  159 (160)
Q Consensus       151 ~v~d~pGfi  159 (160)
                      +++|.||||
T Consensus       491 ~v~d~~Gfi  499 (715)
T 1wdk_A          491 VVNDCPGFL  499 (715)
T ss_dssp             EEESCTTTT
T ss_pred             EEcCCCChh
Confidence            999999997

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.98  E-value=8.9e-32  Score=218.76  Aligned_cols=158  Identities=30%  Similarity=0.457  Sum_probs=140.3

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCC-chhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSS-KEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH   69 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~   69 (160)
                      ++.+|++           +++.+.|.+.++.+.+++ ..... ..+..++++++++++++++++||+||||+||+++.|+
T Consensus        23 la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~  101 (283)
T 4e12_A           23 TAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADG-AAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKR  101 (283)
T ss_dssp             HHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTT-HHHHHHHHCEEESCHHHHTTTCSEEEECCCSCHHHHH
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHH-HHHHHHcCeEEeCCHHHHhccCCEEEEeccCcHHHHH
Confidence            5667887           556667777777765543 22222 2567788999999997789999999999999999999


Q ss_pred             HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ++|++++..+++++||+||||++++++|+..+.+|+|++|+|||||++.++++|++++..|++++++++..|++.+||.|
T Consensus       102 ~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~  181 (283)
T 4e12_A          102 DIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVP  181 (283)
T ss_dssp             HHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEe-cCcCcccC
Q psy3942         150 IVC-KDTPGFTP  160 (160)
Q Consensus       150 v~v-~d~pGfi~  160 (160)
                      +++ +|.||||.
T Consensus       182 v~v~~~~~g~i~  193 (283)
T 4e12_A          182 IELKKEKAGYVL  193 (283)
T ss_dssp             EECSSCCTTTTH
T ss_pred             EEEecCCCCEEe
Confidence            999 89999973

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.97  E-value=2.6e-31  Score=218.66  Aligned_cols=119  Identities=31%  Similarity=0.537  Sum_probs=113.5

Q ss_pred             HHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCC
Q psy3942          36 LTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        36 ~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P  115 (160)
                      +.+++++++++++ ++++||+||||+||++++|+.+|++|+..  |++||+||||+++++++++.+.+|+|++|+|||||
T Consensus        57 ~~~~~i~~~~~~~-~~~~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~P  133 (293)
T 1zej_A           57 ELLSKIEFTTTLE-KVKDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNP  133 (293)
T ss_dssp             GGGGGEEEESSCT-TGGGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSS
T ss_pred             HHhCCeEEeCCHH-HHcCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCc
Confidence            4567899999996 59999999999999999999999999998  99999999999999999999999999999999999


Q ss_pred             CCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCccc
Q psy3942         116 VPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT  159 (160)
Q Consensus       116 ~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi  159 (160)
                      ++.+++|||++|+.|++++++++..|++.+||+|+.++|.  ||
T Consensus       134 v~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d~--fi  175 (293)
T 1zej_A          134 PHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQ--SL  175 (293)
T ss_dssp             TTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESS--CH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEeccc--cc
Confidence            9999999999999999999999999999999999999876  65

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.97  E-value=6.6e-31  Score=227.49  Aligned_cols=154  Identities=34%  Similarity=0.537  Sum_probs=130.0

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ++.+||+           +++++.+++.++..++++.....+ .+..+  .++++++ +++++||+||||+||++++|++
T Consensus        56 la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~--~~i~~~~-~~~~~aDlVIeaVpe~~~~k~~  131 (463)
T 1zcj_A           56 FARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQA-SAKPK--LRFSSST-KELSTVDLVVEAVFEDMNLKKK  131 (463)
T ss_dssp             HHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCC--EEEESCG-GGGTTCSEEEECCCSCHHHHHH
T ss_pred             HHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHH--hhhcCCH-HHHCCCCEEEEcCCCCHHHHHH
Confidence            5677887           455566666666554432211100 11122  3347788 5799999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|+..+++++||+||||++++++|++.+.+|+|++|+|||||++.+++|||++|+.|++++++++..|++.+||+|+
T Consensus       132 v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v  211 (463)
T 1zcj_A          132 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  211 (463)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCccc
Q psy3942         151 VCKDTPGFT  159 (160)
Q Consensus       151 ~v~d~pGfi  159 (160)
                      +++|.|||+
T Consensus       212 ~v~~~~gfi  220 (463)
T 1zcj_A          212 VVGNCYGFV  220 (463)
T ss_dssp             EBCCSTTTT
T ss_pred             EECCCccHH
Confidence            999999997

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.97  E-value=2.8e-29  Score=205.09  Aligned_cols=158  Identities=46%  Similarity=0.757  Sum_probs=138.6

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhh----hhHHHHhcCceecCChhhhcCCCcEEEEeccCChH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGE----KLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMD   66 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~----~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~   66 (160)
                      ++.+||+           +++++.|.+.++.+++++.....    ...+..+.++++++|+++++++||+||+|+||+++
T Consensus        34 la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~  113 (302)
T 1f0y_A           34 AAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLK  113 (302)
T ss_dssp             HHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEEECCCSCHH
T ss_pred             HHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHHHhhcCCCEEEEcCcCcHH
Confidence            5667887           45566677777777666533211    01345677899999997689999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcC
Q psy3942          67 IKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIG  146 (160)
Q Consensus        67 ~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lg  146 (160)
                      +|+++|++|...+++++||+||||+++++++++.+.+|+|++|+||++|++.++++||+.|+.|++++++.+..|++.+|
T Consensus       114 ~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i~~g~~~~~e~~~~~~~l~~~~G  193 (302)
T 1f0y_A          114 VKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG  193 (302)
T ss_dssp             HHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCcCccc
Q psy3942         147 KTTIVCKDTPGFT  159 (160)
Q Consensus       147 k~pv~v~d~pGfi  159 (160)
                      +.|++++|.|||+
T Consensus       194 ~~~v~~~~~~g~i  206 (302)
T 1f0y_A          194 KHPVSCKDTPGFI  206 (302)
T ss_dssp             CEEEEECSCTTTT
T ss_pred             CceEEecCccccc
Confidence            9999999999987

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.41  E-value=8.1e-13  Score=107.04  Aligned_cols=110  Identities=10%  Similarity=0.115  Sum_probs=97.9

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-CCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM  118 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~  118 (160)
                      .++++++..++++++|+||.|++-  ..+++++++|... ++++++|.|++++++++.|...+.++.+++++||.+|...
T Consensus        50 gi~~~~~~~~~~~~aDvVilav~p--~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v  127 (280)
T 3tri_A           50 GVHTTQDNRQGALNADVVVLAVKP--HQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSV  127 (280)
T ss_dssp             CCEEESCHHHHHSSCSEEEECSCG--GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGG
T ss_pred             CCEEeCChHHHHhcCCeEEEEeCH--HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHh
Confidence            567777776789999999999964  6789999999998 8999999999999999999999988899999999999988


Q ss_pred             CceEE-EecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         119 MKLLE-VIRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       119 ~~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      ...++ ++.++.++++.++.+..+++.+|+.+++
T Consensus       128 ~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~~~~v  161 (280)
T 3tri_A          128 RAGATGLFANETVDKDQKNLAESIMRAVGLVIWV  161 (280)
T ss_dssp             TCEEEEEECCTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred             cCccEEEEeCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence            88776 5678999999999999999999995443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.37  E-value=1.4e-13  Score=113.19  Aligned_cols=100  Identities=20%  Similarity=0.260  Sum_probs=89.2

Q ss_pred             hcCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhccc
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVT  101 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~  101 (160)
                      ..+++.++++ +++++||+||+|+              +|+.++|++++++|++.++ ++++  +||++++....++..+
T Consensus        58 ~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           58 TSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhh
Confidence            3578888899 6899999999999              8999999999999999985 8877  9999999999998888


Q ss_pred             CC-CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942         102 NR-KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP  160 (160)
Q Consensus       102 ~~-p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~  160 (160)
                      ++ |+|++|+                  .|+.++......+++.+|+.|   +|.+|||+
T Consensus       136 ~~~~~rviG~------------------~t~ld~~r~~~~la~~lg~~~---~~v~~~v~  174 (317)
T 2ewd_A          136 GLPHNKVCGM------------------AGVLDSSRFRTFIAQHFGVNA---SDVSANVI  174 (317)
T ss_dssp             CCCGGGEEES------------------CHHHHHHHHHHHHHHHHTSCG---GGEECCEE
T ss_pred             CCCHHHEEec------------------cCcHHHHHHHHHHHHHhCcCh---hhceEEEE
Confidence            87 7899986                  689999999999999999974   89999973

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.21  E-value=2e-11  Score=96.55  Aligned_cols=110  Identities=16%  Similarity=0.223  Sum_probs=95.8

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      .+..+++..++++++|+||.|++  ....+++++++...+++++++.|.++++++..+...+..+.+++++|+.+|....
T Consensus        50 g~~~~~~~~e~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~  127 (247)
T 3gt0_A           50 GLTTTTDNNEVAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVG  127 (247)
T ss_dssp             CCEECSCHHHHHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGT
T ss_pred             CCEEeCChHHHHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHc
Confidence            46677788778899999999994  6678899999999999999999999999999999888878899999999999888


Q ss_pred             c-eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         120 K-LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       120 ~-lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      + .+.++.++.++++.++.+..+++.+|+ ++.+
T Consensus       128 ~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~  160 (247)
T 3gt0_A          128 EGMSALCPNEMVTEKDLEDVLNIFNSFGQ-TEIV  160 (247)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHGGGEE-EEEC
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence            7 899999999999999999999999999 5555

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.15  E-value=3.5e-10  Score=93.05  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             eecCChhh-hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC--HHHHhcccCCCCcEEEeecCCCCC-
Q psy3942          42 KGSSKVED-SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS--ITEIASVTNRKDKFVGLHFFNPVP-  117 (160)
Q Consensus        42 ~~~~~~~~-al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~--i~~la~~~~~p~r~ig~Hf~~P~~-  117 (160)
                      ..++++++ ++++||+||.|+|.+.  ..++++++...++++++|.+.+|.-+  +..+...+  |.|++|.|+++++. 
T Consensus        82 ~~~~~~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l--~~~~v~~hPm~G~e~  157 (314)
T 3ggo_A           82 EGTTSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEK  157 (314)
T ss_dssp             EEESCTTGGGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEECCCCCC
T ss_pred             hhcCCHHHHhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc--CCCEEecCcccCCcc
Confidence            45677876 7899999999999875  57899999999999999998877643  55666554  34999999999764 


Q ss_pred             -----------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         118 -----------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       118 -----------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                                 ..+++.+++++.++++.++++..+++.+|+.++.+.
T Consensus       158 sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  204 (314)
T 3ggo_A          158 SGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMS  204 (314)
T ss_dssp             CSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             cchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                       356899999999999999999999999999999873

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.02  E-value=8.4e-10  Score=87.56  Aligned_cols=109  Identities=6%  Similarity=0.073  Sum_probs=87.9

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCC---
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPV---  116 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~---  116 (160)
                      .+..+++++++++++|+||.|+|.+ .+ ++++.++...++++++|.+++++++.+.++..+..+.   ..|+++|.   
T Consensus        55 g~~~~~~~~~~~~~~Dvvi~av~~~-~~-~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~~---~~~~~~~~~g~  129 (266)
T 3d1l_A           55 EAEYTTDLAEVNPYAKLYIVSLKDS-AF-AELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYG---VFYPMQTFSKQ  129 (266)
T ss_dssp             TCEEESCGGGSCSCCSEEEECCCHH-HH-HHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSEE---EEEECCCC---
T ss_pred             CCceeCCHHHHhcCCCEEEEecCHH-HH-HHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhcc---CcCCceecCCC
Confidence            4667788877789999999999998 44 8899999999999999999999999998877665432   36888762   


Q ss_pred             --CCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         117 --PMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       117 --~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                        ..++-++++. ..++++..+.+..+++.+|+.|+.+.+
T Consensus       130 ~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~g~~~~~~~~  168 (266)
T 3d1l_A          130 REVDFKEIPFFI-EASSTEDAAFLKAIASTLSNRVYDADS  168 (266)
T ss_dssp             CCCCCTTCCEEE-EESSHHHHHHHHHHHHTTCSCEEECCH
T ss_pred             chhhcCCCeEEE-ecCCHHHHHHHHHHHHhcCCcEEEeCH
Confidence              2344455444 467899999999999999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.98  E-value=8.9e-10  Score=95.79  Aligned_cols=68  Identities=15%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             ecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942          87 SNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP  160 (160)
Q Consensus        87 snTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~  160 (160)
                      ..|++.+.++.  ...+|+|++|+|+++    +++|||++++.|++++++++.+|++++||+|++++|.||||.
T Consensus       323 ~~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~  390 (483)
T 3mog_A          323 IETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLI  390 (483)
T ss_dssp             EECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTH
T ss_pred             cccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHH
Confidence            36888999988  457899999999999    899999999999999999999999999999999999999983

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.75  E-value=2.9e-08  Score=79.56  Aligned_cols=110  Identities=12%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-CCCCcEEeecCCCC--CHHHHhcccCC-CCcEEEeecC----
Q psy3942          42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSSL--SITEIASVTNR-KDKFVGLHFF----  113 (160)
Q Consensus        42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-~~~~~iiasnTS~l--~i~~la~~~~~-p~r~ig~Hf~----  113 (160)
                      ..+++++++++++|+||.|+|...-  ++++.++... ++++++|.+.++..  ....+...+.. ..|+++.|++    
T Consensus        55 ~~~~~~~~~~~~aDvVilavp~~~~--~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~  132 (290)
T 3b1f_A           55 EATADFKVFAALADVIILAVPIKKT--IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSH  132 (290)
T ss_dssp             EEESCTTTTGGGCSEEEECSCHHHH--HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC----
T ss_pred             cccCCHHHhhcCCCEEEEcCCHHHH--HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCC
Confidence            4566776678999999999998765  7899999888 88999888543332  23566666654 6799999998    


Q ss_pred             --CCCC------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         114 --NPVP------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       114 --~P~~------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                        .|.+      ..+.+.+.++..++++.++.+..+++.+|+.++.+.
T Consensus       133 ~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~  180 (290)
T 3b1f_A          133 KSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEID  180 (290)
T ss_dssp             -CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECC
T ss_pred             cchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence              6654      346788999999999999999999999999888764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.71  E-value=2e-08  Score=80.60  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=86.2

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCC---
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP---  117 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~---  117 (160)
                      +..+ +..++++++|+||.|+|.+.  -++++.++...++++++|.+.+++.+++.+.. .....++++.|+..|..   
T Consensus        56 ~~~~-~~~~~~~~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~  131 (286)
T 3c24_A           56 IPLT-DGDGWIDEADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFND  131 (286)
T ss_dssp             CCCC-CSSGGGGTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCC
T ss_pred             CCcC-CHHHHhcCCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCcccccc
Confidence            4443 45467899999999999877  57899999999999999999888888888875 33335899999999876   


Q ss_pred             -----CCc--------eEEEecCCCCCHHHHHHHHHHHHHcCC---eEEEec
Q psy3942         118 -----MMK--------LLEVIRTNDTSDATYNAVTEWGKSIGK---TTIVCK  153 (160)
Q Consensus       118 -----~~~--------lVEvv~~~~T~~~~~~~~~~~~~~lgk---~pv~v~  153 (160)
                           ...        ...++.+..++++.++.+..+++.+|+   .++.+.
T Consensus       132 ~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~  183 (286)
T 3c24_A          132 ETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVT  183 (286)
T ss_dssp             CCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             ccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeC
Confidence                 222        244555556889999999999999999   788774

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.65  E-value=9e-09  Score=85.17  Aligned_cols=70  Identities=20%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             hcCceecCChhhhcCCCcEEEEec--cC------------ChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhccc
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAI--VE------------NMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVT  101 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav--~E------------~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~  101 (160)
                      ..+|+.++|+ +++++||+||+++  |+            |+++|+++++++++.| |++++  +||++++ ++.++...
T Consensus        68 ~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~-~t~~~~~~  144 (328)
T 2hjr_A           68 PAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDA-MVYYFKEK  144 (328)
T ss_dssp             CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH-HHHHHHHH
T ss_pred             CCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHH-HHHHHHHh
Confidence            4578998999 6899999999998  65            7789999999999998 67765  8998886 46776554


Q ss_pred             C--CCCcEEEe
Q psy3942         102 N--RKDKFVGL  110 (160)
Q Consensus       102 ~--~p~r~ig~  110 (160)
                      .  +|+||+|+
T Consensus       145 ~~~~~~rviG~  155 (328)
T 2hjr_A          145 SGIPANKVCGM  155 (328)
T ss_dssp             HCCCGGGEEES
T ss_pred             cCCChhhEEEe
Confidence            4  68999998

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.64  E-value=9.5e-09  Score=84.04  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHH--HhcccCCCCcEEEeecCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE--IASVTNRKDKFVGLHFFNPVP  117 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~--la~~~~~p~r~ig~Hf~~P~~  117 (160)
                      .+..+++++++++++|+||.|+|.+...+  ++.++...++++++|...||..+.+.  ++..+  +++++|+||+++|-
T Consensus        70 g~~~~~~~~e~~~~aDvVi~~vp~~~~~~--~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~--~~~~~g~~~vd~pv  145 (312)
T 3qsg_A           70 GVSCKASVAEVAGECDVIFSLVTAQAALE--VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVI--SRHRPSAQYAAVAV  145 (312)
T ss_dssp             TCEECSCHHHHHHHCSEEEECSCTTTHHH--HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHH--HHHCTTCEEEEEEE
T ss_pred             CCEEeCCHHHHHhcCCEEEEecCchhHHH--HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHH--HhhcCCCeEEeccc
Confidence            46777888778899999999999998775  67899999999999887776665543  33332  23333555554332


Q ss_pred             CC-------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         118 MM-------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       118 ~~-------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      ..       .++.++.|+.+     +++..+++.+|+.++.+.+.+|
T Consensus       146 ~g~~~~~~g~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g  187 (312)
T 3qsg_A          146 MSAVKPHGHRVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVG  187 (312)
T ss_dssp             CSCSTTTGGGSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTT
T ss_pred             cCCchhhcCCEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCC
Confidence            22       68888888765     7888999999999998876565

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.63  E-value=2.5e-08  Score=81.86  Aligned_cols=91  Identities=13%  Similarity=0.181  Sum_probs=65.3

Q ss_pred             cCceecCChhhhcCCCcEEEEec-------------cCChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhcccCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI-------------VENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVTNR  103 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav-------------~E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~~~  103 (160)
                      .+++.++|+ +++++||+||+++             .||+++|+++++++++.| |+++|  +||++++-..-+......
T Consensus        64 ~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~  141 (303)
T 2i6t_A           64 PNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTF  141 (303)
T ss_dssp             TTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCC
T ss_pred             CCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCC
Confidence            478888899 6899999999997             999999999999999999 77765  899555222222222233


Q ss_pred             -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                       |+|++|+                  .|.-++...-..+++.+|..|
T Consensus       142 p~~rviG~------------------gt~Ld~~R~~~~la~~lgv~~  170 (303)
T 2i6t_A          142 PANRVIGI------------------GCNLDSQRLQYIITNVLKAQT  170 (303)
T ss_dssp             CGGGEEEC------------------TTHHHHHHHHHHHHHTSCCTT
T ss_pred             CHHHeeCC------------------CCCchHHHHHHHHHHHcCCCh
Confidence             7899998                  444444444445556677643

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.61  E-value=1.1e-07  Score=77.94  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC---CCcEEEeecCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR---KDKFVGLHFFNPV  116 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~---p~r~ig~Hf~~P~  116 (160)
                      .++++++..++++++|+||-|++  .....+++.++...++++++|.+.+.++++..|...+..   +.++++.|+..|.
T Consensus        71 G~~~~~~~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~  148 (322)
T 2izz_A           71 GVKLTPHNKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPV  148 (322)
T ss_dssp             TCEEESCHHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGG
T ss_pred             CCEEeCChHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHH
Confidence            36667777677889999999999  457778999999989999999999999999888766543   4589999998888


Q ss_pred             CCCceEEEe-cCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         117 PMMKLLEVI-RTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       117 ~~~~lVEvv-~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      ....-..++ .|..++++..+.+..+++.+|+.+.+
T Consensus       149 ~~~~g~~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~  184 (322)
T 2izz_A          149 VVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEV  184 (322)
T ss_dssp             GGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEEC
T ss_pred             HHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence            766555555 67778899999999999999986544

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.61  E-value=1.4e-07  Score=74.27  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCC-CCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN-PVPM  118 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~-P~~~  118 (160)
                      .++.++++.+++ ++|+|+.|+|  ....++++.++..  + +++|.+.++++++..|.+.+..+.++++. +.| |...
T Consensus        45 g~~~~~~~~~~~-~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~-~~~~~~~~  117 (263)
T 1yqg_A           45 GVETSATLPELH-SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRV-MPNTPGKI  117 (263)
T ss_dssp             CCEEESSCCCCC-TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEE-ECCGGGGG
T ss_pred             CCEEeCCHHHHh-cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEE-cCCHHHHH
Confidence            466677776678 9999999999  4555678777765  4 89999999999999998888766689998 555 4443


Q ss_pred             C-ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         119 M-KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       119 ~-~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      . ....++.+..++++.++.+..+++.+|+.+ .+.
T Consensus       118 ~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~~  152 (263)
T 1yqg_A          118 GLGVSGMYAEAEVSETDRRIADRIMKSVGLTV-WLD  152 (263)
T ss_dssp             TCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE-ECS
T ss_pred             cCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE-EeC
Confidence            3 367788999999999999999999999876 554

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.55  E-value=5e-07  Score=71.81  Aligned_cols=108  Identities=9%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCC-----
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP-----  117 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~-----  117 (160)
                      .+++++++ .++|+||.|+|.+  ...+++.++...++++++|.+ +++.+...+........|+++.|++....     
T Consensus        48 ~~~~~~~~-~~~D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~-~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~  123 (279)
T 2f1k_A           48 AGQDLSLL-QTAKIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTD-VASVKTAIAEPASQLWSGFIGGHPMAGTAAQGID  123 (279)
T ss_dssp             EESCGGGG-TTCSEEEECSCHH--HHHHHHHHHGGGSCTTCEEEE-CCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGG
T ss_pred             ccCCHHHh-CCCCEEEEECCHH--HHHHHHHHHHhhCCCCCEEEE-CCCCcHHHHHHHHHHhCCEeecCcccCCccCCHH
Confidence            46677666 9999999999964  677899999999999998876 46676654433222223899999876221     


Q ss_pred             -------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         118 -------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       118 -------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                             ..+.+.++++..++++..+.+..++..+|+.++.+.|
T Consensus       124 ~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  167 (279)
T 2f1k_A          124 GAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP  167 (279)
T ss_dssp             GCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred             HHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                   2347889999899999999999999999999988754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.53  E-value=3.5e-08  Score=81.72  Aligned_cols=91  Identities=9%  Similarity=0.115  Sum_probs=69.0

Q ss_pred             cCceecCChhhhcCCCcEEEEec--cCCh-----------------HHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHH
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI--VENM-----------------DIKHKLFTSVDKIAPASAIL--ASNTSSLSITEI   97 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav--~E~l-----------------~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~l   97 (160)
                      .+|+.++|+++++++||+||+++  |++.                 .++++++++|++.| |++++  +||++++. +.+
T Consensus        64 ~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~  141 (331)
T 1pzg_A           64 VSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKV  141 (331)
T ss_dssp             CCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHH
T ss_pred             CEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHH
Confidence            57888999976899999999999  7653                 45999999999998 77876  89999985 677


Q ss_pred             hcccC--CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942          98 ASVTN--RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus        98 a~~~~--~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      +....  +|+||+|+                  .|.-++...-..+++.+|..|
T Consensus       142 ~~~~~~~~~~rviG~------------------gt~LD~~R~~~~la~~lgv~~  177 (331)
T 1pzg_A          142 MCEASGVPTNMICGM------------------ACMLDSGRFRRYVADALSVSP  177 (331)
T ss_dssp             HHHHHCCCGGGEEEC------------------CHHHHHHHHHHHHHHHHTSCG
T ss_pred             HHHhcCCChhcEEec------------------cchHHHHHHHHHHHHHhCCCH
Confidence            65443  68899998                  355555333344446687654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.53  E-value=2.3e-07  Score=73.07  Aligned_cols=107  Identities=14%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK  120 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~  120 (160)
                      +..++++++.++++|+|+.|+|.  ....+++.++    .+++++.+.++++++..+.....+..+++..|+..|.....
T Consensus        48 ~~~~~~~~~~~~~~D~Vi~~v~~--~~~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~  121 (259)
T 2ahr_A           48 LPYAMSHQDLIDQVDLVILGIKP--QLFETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQ  121 (259)
T ss_dssp             CCBCSSHHHHHHTCSEEEECSCG--GGHHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTC
T ss_pred             CEeeCCHHHHHhcCCEEEEEeCc--HhHHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcC
Confidence            55677887778899999999993  3445666554    37889999999999999988877666899888877766554


Q ss_pred             -eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         121 -LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       121 -lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                       ...++.+..++++.++.+..+++.+| .++.+.+
T Consensus       122 g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~~~~~~  155 (259)
T 2ahr_A          122 SSTALTGNALVSQELQARVRDLTDSFG-STFDISE  155 (259)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHHTTE-EEEECCG
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHhCC-CEEEecH
Confidence             67788899999999999999999999 4666643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.50  E-value=5.1e-07  Score=71.90  Aligned_cols=107  Identities=14%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             ecCChhhhcC-CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCCC--
Q psy3942          43 GSSKVEDSVS-QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPVP--  117 (160)
Q Consensus        43 ~~~~~~~al~-~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~~--  117 (160)
                      .+++++++++ ++|+|+.|+|...  -.+++.++...++++++|...++.  ..+..+...+.  +++++.|++..+.  
T Consensus        51 ~~~~~~~~~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~--~~~v~~~p~~~~~~~  126 (281)
T 2g5c_A           51 GTTSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKS  126 (281)
T ss_dssp             EESCGGGGGGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEEECCCSCC
T ss_pred             ccCCHHHHhcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcc--ccceeeccccCCccC
Confidence            4567766788 9999999999874  337888898888899877753332  22345555553  3599999877532  


Q ss_pred             ----------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         118 ----------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       118 ----------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                                ....+.++++..++++..+.+..+++.+|+.++.+.
T Consensus       127 gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~  172 (281)
T 2g5c_A          127 GVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMS  172 (281)
T ss_dssp             SGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             ChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                      345688999989999999999999999999988875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.47  E-value=5.8e-08  Score=80.15  Aligned_cols=70  Identities=20%  Similarity=0.338  Sum_probs=57.5

Q ss_pred             hcCceecCChhhhcCCCcEEEEec--cCC-----------------hHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHH
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAI--VEN-----------------MDIKHKLFTSVDKIAPASAIL--ASNTSSLSITE   96 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav--~E~-----------------l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~   96 (160)
                      ..+|+.++|+ +++++||+||+++  |++                 .++|++++++|++.| |++++  +||++++. +.
T Consensus        58 ~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~  134 (322)
T 1t2d_A           58 NCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQ  134 (322)
T ss_dssp             CCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HH
T ss_pred             CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HH
Confidence            3578888999 6899999999998  654                 358999999999998 77754  89998885 67


Q ss_pred             HhcccC--CCCcEEEe
Q psy3942          97 IASVTN--RKDKFVGL  110 (160)
Q Consensus        97 la~~~~--~p~r~ig~  110 (160)
                      ++....  +|+||+|+
T Consensus       135 ~~~~~~g~~~~rviG~  150 (322)
T 1t2d_A          135 LLHQHSGVPKNKIIGL  150 (322)
T ss_dssp             HHHHHHCCCGGGEEEC
T ss_pred             HHHHhcCCChHHEEec
Confidence            765544  68899998

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.45  E-value=1e-07  Score=76.31  Aligned_cols=101  Identities=11%  Similarity=0.105  Sum_probs=72.3

Q ss_pred             ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEee----cCCCCC-
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLH----FFNPVP-  117 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~H----f~~P~~-  117 (160)
                      .++++++.++++|+||.|+|.+.  +.+++.++.   .++++|.+.+++++++.+...     ++.+.|    |.||+. 
T Consensus        48 ~~~~~~~~~~~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~  117 (276)
T 2i76_A           48 KAATLEKHPELNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKA  117 (276)
T ss_dssp             CCCSSCCCCC---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTG
T ss_pred             ccCCHHHHHhcCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchh
Confidence            56677666889999999999987  678887775   678888876668888877654     567788    556433 


Q ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         118 MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       118 ~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      ...+.++.....++++..+.+..+++.+|+.++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~~~v~  153 (276)
T 2i76_A          118 LEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP  153 (276)
T ss_dssp             GGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECC
T ss_pred             HHHhCCCeEEEEeChHHHHHHHHHHHHhCCCEEEEC
Confidence            222555555555677789999999999999999885

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.44  E-value=7.7e-07  Score=69.99  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=82.7

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      .++.+++..++++++|+||.|++..  ..++++.++...+ +++++.|.++++++..+...+....+++..-+-.|....
T Consensus        45 g~~~~~~~~~~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~  121 (262)
T 2rcy_A           45 TLNYMSSNEELARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVG  121 (262)
T ss_dssp             SSEECSCHHHHHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGT
T ss_pred             ceEEeCCHHHHHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHc
Confidence            4566677766788999999999954  5778999998888 688899999999999888877554355421112233322


Q ss_pred             c-eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         120 K-LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       120 ~-lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      . +.-++.+..++++.++.+..+++.+|+ ++.+.
T Consensus       122 ~g~~~~~~~~~~~~~~~~~~~~ll~~~G~-~~~~~  155 (262)
T 2rcy_A          122 EGSFIYCSNKNVNSTDKKYVNDIFNSCGI-IHEIK  155 (262)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHTSEE-EEECC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence            2 444667888999999999999999998 87774

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.43  E-value=2.6e-07  Score=70.53  Aligned_cols=107  Identities=19%  Similarity=0.170  Sum_probs=79.6

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC--------------HHHHhcccCCCCc
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS--------------ITEIASVTNRKDK  106 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~--------------i~~la~~~~~p~r  106 (160)
                      +.. ++++++++++|+||.|++.+.  -++++.++...+ +++++.+.+++++              +.+|++.+.. .+
T Consensus        53 ~~~-~~~~~~~~~~D~Vi~~~~~~~--~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~  127 (212)
T 1jay_A           53 ITG-MKNEDAAEACDIAVLTIPWEH--AIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EK  127 (212)
T ss_dssp             EEE-EEHHHHHHHCSEEEECSCHHH--HHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SC
T ss_pred             CCh-hhHHHHHhcCCEEEEeCChhh--HHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-Ce
Confidence            443 566667899999999999644  348888887766 4899999999887              6888887753 67


Q ss_pred             EEEeecCCCCCC-------CceEEEecCCCCCHHHHHHHHHHHHHc-CCeEEEecC
Q psy3942         107 FVGLHFFNPVPM-------MKLLEVIRTNDTSDATYNAVTEWGKSI-GKTTIVCKD  154 (160)
Q Consensus       107 ~ig~Hf~~P~~~-------~~lVEvv~~~~T~~~~~~~~~~~~~~l-gk~pv~v~d  154 (160)
                      ++..|...|...       ..+..++.|.  +++.++.+.++++.+ |+.|+.+.+
T Consensus       128 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          128 VVSALHTIPAARFANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             EEECCTTCCHHHHHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             EEEEccchHHHHhhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence            776543322211       1255677766  689999999999999 999998865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.33  E-value=5.5e-07  Score=78.01  Aligned_cols=113  Identities=12%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccC--------ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhccc----C
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVE--------NMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVT----N  102 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E--------~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~----~  102 (160)
                      .+++++++|+++++++||+||.|+|.        |+...+++++.|...+++++++. +.|++++.   +++..+    .
T Consensus        69 ~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~  147 (478)
T 2y0c_A           69 AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELA  147 (478)
T ss_dssp             TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhc
Confidence            36799999997789999999999999        67999999999999999999884 56677662   222221    1


Q ss_pred             CC---CcEEEeecCCCCCCCceE---------EEecCCCCCH----HHHHHHHHHHHHcCC--eEEEecC
Q psy3942         103 RK---DKFVGLHFFNPVPMMKLL---------EVIRTNDTSD----ATYNAVTEWGKSIGK--TTIVCKD  154 (160)
Q Consensus       103 ~p---~r~ig~Hf~~P~~~~~lV---------Evv~~~~T~~----~~~~~~~~~~~~lgk--~pv~v~d  154 (160)
                      .+   .++  .++++|....+..         .|+.|.. ++    ++.+.+..+++.+++  .++++.|
T Consensus       148 ~g~~~~~~--~v~~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d  214 (478)
T 2y0c_A          148 KRGGDQMF--SVVSNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMD  214 (478)
T ss_dssp             HTTCCCCE--EEEECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEEC
T ss_pred             CCCCCccE--EEEEChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCC
Confidence            12   222  3689998888766         5777764 34    788999999988876  6777655

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.33  E-value=6.1e-07  Score=74.75  Aligned_cols=108  Identities=13%  Similarity=0.183  Sum_probs=80.6

Q ss_pred             ceecCChhhhcC----CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCC
Q psy3942          41 IKGSSKVEDSVS----QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFN  114 (160)
Q Consensus        41 i~~~~~~~~al~----~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~  114 (160)
                      +..+++++++++    ++|+||-|+|  .....++++++..+ +++++|...+|.  ..+..+..... ..++++.|++.
T Consensus        52 ~~~~~~~~e~~~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPma  127 (341)
T 3ktd_A           52 FDVSADLEATLQRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMA  127 (341)
T ss_dssp             CCEESCHHHHHHHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECC
T ss_pred             CeeeCCHHHHHHhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccc
Confidence            345567655554    5799999999  56778999999887 788887544333  33445655443 46999999988


Q ss_pred             CCCC------------CceEEEecCCCCCHH--------HHHHHHHHHHHcCCeEEEe
Q psy3942         115 PVPM------------MKLLEVIRTNDTSDA--------TYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       115 P~~~------------~~lVEvv~~~~T~~~--------~~~~~~~~~~~lgk~pv~v  152 (160)
                      .+..            ...+=+++++.|+++        .++++..+++.+|+.++.+
T Consensus       128 G~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~  185 (341)
T 3ktd_A          128 GTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPS  185 (341)
T ss_dssp             SCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             cccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEe
Confidence            6542            224558888899988        9999999999999999887

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.32  E-value=4.2e-07  Score=74.63  Aligned_cols=95  Identities=20%  Similarity=0.183  Sum_probs=72.3

Q ss_pred             CceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcE--EeecCCCCCHHHHhccc-C
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAI--LASNTSSLSITEIASVT-N  102 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~i--iasnTS~l~i~~la~~~-~  102 (160)
                      ++..+ ++ +++++||+||.|++.              |..+++++++++.+.+ |+++  ++||++++ ++.++... .
T Consensus        56 ~i~~~-d~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~-~~~~~~~~~~  131 (319)
T 1a5z_A           56 NIYAG-DY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDV-LTYFFLKESG  131 (319)
T ss_dssp             EEEEC-CG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH-HHHHHHHHHT
T ss_pred             EEEeC-CH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHH-HHHHHHHHhC
Confidence            45544 66 579999999999996              3467899999999997 5664  47888876 35665443 3


Q ss_pred             -CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCccc
Q psy3942         103 -RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT  159 (160)
Q Consensus       103 -~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi  159 (160)
                       .|+|++|+                  .|..++......+++.+|..|   +|.+|||
T Consensus       132 ~~~~rviG~------------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v  168 (319)
T 1a5z_A          132 MDPRKVFGS------------------GTVLDTARLRTLIAQHCGFSP---RSVHVYV  168 (319)
T ss_dssp             CCTTTEEEC------------------TTHHHHHHHHHHHHHHHTCCG---GGEECCE
T ss_pred             CChhhEEee------------------CccHHHHHHHHHHHHHhCcCH---HHceEEE
Confidence             68899998                  888888888888889999765   5666665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.20  E-value=5.7e-06  Score=66.94  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=75.6

Q ss_pred             ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC---HHHHhcccCCCCcEEEeecCCCCCC----
Q psy3942          46 KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS---ITEIASVTNRKDKFVGLHFFNPVPM----  118 (160)
Q Consensus        46 ~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~---i~~la~~~~~p~r~ig~Hf~~P~~~----  118 (160)
                      +..+++++||+||-|+|...  ..+++.++...++++++|...+| .+   +..+....  |.|+++.|++..+..    
T Consensus        58 ~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~s-vk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~  132 (298)
T 2pv7_A           58 VAESILANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTS-VKREPLAKMLEVH--TGAVLGLHPMFGADIASMA  132 (298)
T ss_dssp             GHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCS-CCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCT
T ss_pred             CHHHHhcCCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCC-CCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhc
Confidence            45567899999999999876  78899999998999997775543 33   34454443  579999999765432    


Q ss_pred             CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         119 MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      ...+-++++.  +++.++.+.++++.+|..++.+.
T Consensus       133 g~~~~l~~~~--~~~~~~~v~~l~~~~G~~~~~~~  165 (298)
T 2pv7_A          133 KQVVVRCDGR--FPERYEWLLEQIQIWGAKIYQTN  165 (298)
T ss_dssp             TCEEEEEEEE--CGGGTHHHHHHHHHTTCEEEECC
T ss_pred             CCeEEEecCC--CHHHHHHHHHHHHHcCCEEEECC
Confidence            2344455543  78889999999999999888764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.15  E-value=1.2e-05  Score=64.11  Aligned_cols=103  Identities=11%  Similarity=0.129  Sum_probs=76.0

Q ss_pred             hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-HHHhcccCCCCcEE-EeecCCCCCCCc-------
Q psy3942          50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-TEIASVTNRKDKFV-GLHFFNPVPMMK-------  120 (160)
Q Consensus        50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-~~la~~~~~p~r~i-g~Hf~~P~~~~~-------  120 (160)
                      +++++|+||.|++.+  .-.++++++...++++++|.+.+.+++. ..+++.+. +.+++ |.+++..+..+|       
T Consensus        71 ~~~~~d~vi~~v~~~--~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~  147 (316)
T 2ew2_A           71 QNEQVDLIIALTKAQ--QLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLG  147 (316)
T ss_dssp             TSCCCSEEEECSCHH--HHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECS
T ss_pred             cCCCCCEEEEEeccc--cHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEec
Confidence            345999999999975  3478999999999999999999888887 45666664 34788 555433322222       


Q ss_pred             --eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942         121 --LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT  155 (160)
Q Consensus       121 --lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~  155 (160)
                        .+.+.....++++..+.+..+++.+|+.+.+..|.
T Consensus       148 ~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~  184 (316)
T 2ew2_A          148 DGEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV  184 (316)
T ss_dssp             CCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred             CCcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence              23455556678999999999999999987777653

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.15  E-value=9.9e-07  Score=71.38  Aligned_cols=107  Identities=17%  Similarity=0.294  Sum_probs=73.1

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCCCH--HHHhcccCCCCcEEEeecCC-CCC-
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSLSI--TEIASVTNRKDKFVGLHFFN-PVP-  117 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l~i--~~la~~~~~p~r~ig~Hf~~-P~~-  117 (160)
                      +++++++++++|+||.|+|.+..++.-+|  +.+...++++++|...++..+.  .+++..+...    |+||+. |.. 
T Consensus        55 ~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g  130 (303)
T 3g0o_A           55 AASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTAL----NLNMLDAPVSG  130 (303)
T ss_dssp             ESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTT----TCEEEECCEES
T ss_pred             cCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc----CCeEEeCCCCC
Confidence            67777788999999999999888876655  6677788888877644433332  2454444221    334433 211 


Q ss_pred             ------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         118 ------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       118 ------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                            ...++-++.   +++++++++..+++.+|+.++.+.+.+|
T Consensus       131 ~~~~a~~g~l~~~~g---g~~~~~~~~~~ll~~~g~~~~~~~~~~g  173 (303)
T 3g0o_A          131 GAVKAAQGEMTVMAS---GSEAAFTRLKPVLDAVASNVYRISDTPG  173 (303)
T ss_dssp             CHHHHHTTCEEEEEE---CCHHHHHHHHHHHHHHEEEEEEEESSTT
T ss_pred             ChhhhhcCCeEEEeC---CCHHHHHHHHHHHHHHCCCEEECCCCCc
Confidence                  113455554   3689999999999999999998876555

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.14  E-value=3.5e-06  Score=69.64  Aligned_cols=102  Identities=16%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHH-HHhhhCCCCcEEeecCCCCCHHHHhcccCCCC--cEEEeecCCCCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT-SVDKIAPASAILASNTSSLSITEIASVTNRKD--KFVGLHFFNPVP  117 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~-~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~--r~ig~Hf~~P~~  117 (160)
                      +..+ +++++++++|+|+-|+|....  .+++. ++...++++++|.+. +++.+ .+ .....|.  ++++.|+..|.+
T Consensus        61 ~~~~-~~~e~~~~aDvVilavp~~~~--~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~-~~~~~~~~~~vv~~~P~gp~~  134 (338)
T 1np3_A           61 LKVA-DVKTAVAAADVVMILTPDEFQ--GRLYKEEIEPNLKKGATLAFA-HGFSI-HY-NQVVPRADLDVIMIAPKAPGH  134 (338)
T ss_dssp             CEEE-CHHHHHHTCSEEEECSCHHHH--HHHHHHHTGGGCCTTCEEEES-CCHHH-HT-TSSCCCTTCEEEEEEESSCSH
T ss_pred             CEEc-cHHHHHhcCCEEEEeCCcHHH--HHHHHHHHHhhCCCCCEEEEc-CCchh-HH-HhhcCCCCcEEEeccCCCCch
Confidence            4555 776778999999999998875  78898 999999999999876 55655 33 3333343  599999977765


Q ss_pred             C-CceEE--------EecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         118 M-MKLLE--------VIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       118 ~-~~lVE--------vv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      . ..+.+        +.++..++++..+.+.++++.+|..
T Consensus       135 a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~  174 (338)
T 1np3_A          135 TVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGG  174 (338)
T ss_dssp             HHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHH
T ss_pred             hHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            2 12222        6677788899999999999999994

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.13  E-value=1.7e-06  Score=69.91  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--HHhcccCC-CCcEEEeecCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--EIASVTNR-KDKFVGLHFFNPV  116 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--~la~~~~~-p~r~ig~Hf~~P~  116 (160)
                      .++.+++++++++ +|+||.|+|++..++. ++..+...++++++|...++..+.+  +++..+.. .-+++....+.++
T Consensus        58 g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~-v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~  135 (296)
T 3qha_A           58 GATLADSVADVAA-ADLIHITVLDDAQVRE-VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGA  135 (296)
T ss_dssp             TCEECSSHHHHTT-SSEEEECCSSHHHHHH-HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCH
T ss_pred             CCEEcCCHHHHHh-CCEEEEECCChHHHHH-HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCH
Confidence            5778889977777 9999999999888775 4588888888888776554443332  45544432 2223332222211


Q ss_pred             C---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         117 P---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       117 ~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      .   ..+++.++.|   ++++++++..+++.+|+.++.+.+ +|
T Consensus       136 ~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g  175 (296)
T 3qha_A          136 AAAARGELATMVGA---DREVYERIKPAFKHWAAVVIHAGE-PG  175 (296)
T ss_dssp             HHHHHTCEEEEEEC---CHHHHHHHHHHHHHHEEEEEEEES-TT
T ss_pred             HHHhcCCccEEecC---CHHHHHHHHHHHHHHcCCeEEcCC-hh
Confidence            1   2346677765   689999999999999999998865 44

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.10  E-value=2.9e-06  Score=69.16  Aligned_cols=88  Identities=18%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CceecCChhhhcCCCcEEEEec--c------------CChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhcccCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAI--V------------ENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVTNR  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav--~------------E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~~~  103 (160)
                      +++. +++ +++++||+||.++  |            +|+++++++++++.+.+ |++++  +||++++....++..+ .
T Consensus        56 ~i~~-~~~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~  131 (304)
T 2v6b_A           56 RVWH-GGH-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-P  131 (304)
T ss_dssp             EEEE-ECG-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-C
T ss_pred             EEEE-CCH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-C
Confidence            3443 567 5899999999999  4            47889999999999997 66654  7998887655555555 8


Q ss_pred             CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         104 KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       104 p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      |+|++|+                  .|.-++......+++.+|..|
T Consensus       132 ~~rviG~------------------gt~Ld~~r~~~~la~~l~v~~  159 (304)
T 2v6b_A          132 GQPVIGS------------------GTVLDSARFRHLMAQHAGVDG  159 (304)
T ss_dssp             SSCEEEC------------------TTHHHHHHHHHHHHHHHTSCG
T ss_pred             hhcEEeC------------------CcCchHHHHHHHHHHHhCcCH
Confidence            8999997                  555555555555667777643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.10  E-value=1.2e-06  Score=70.20  Aligned_cols=111  Identities=10%  Similarity=0.062  Sum_probs=75.9

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCCCHH---HHhcccC-CCCcEEEeec
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSLSIT---EIASVTN-RKDKFVGLHF  112 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l~i~---~la~~~~-~p~r~ig~Hf  112 (160)
                      ..++.+++++++++++|+||.|+|++..++.-++  ..+...+++++++...+ +.++.   +++..+. +.-+++. |+
T Consensus        43 ~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~s-t~~~~~~~~~~~~~~~~g~~~~~-~p  120 (287)
T 3pef_A           43 LGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMS-TVDPATSQRIGVAVVAKGGRFLE-AP  120 (287)
T ss_dssp             TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred             CCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCC-CCCHHHHHHHHHHHHHhCCEEEE-CC
Confidence            3577888988888999999999999888887665  77888888888776554 43333   4444332 1123333 22


Q ss_pred             CCCCC----CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         113 FNPVP----MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       113 ~~P~~----~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      ....+    ...++-++.|   ++++++++..+++.+|+.++.+.+
T Consensus       121 v~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~  163 (287)
T 3pef_A          121 VSGSKKPAEDGTLIILAAG---DRNLYDEAMPGFEKMGKKIIHLGD  163 (287)
T ss_dssp             EECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS
T ss_pred             CcCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhCCCeEEeCC
Confidence            21111    1245556544   689999999999999999998865

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.08  E-value=5.8e-07  Score=72.83  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEe--ecCCCCCHHHHhcccC-CCCcEEEeecCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILA--SNTSSLSITEIASVTN-RKDKFVGLHFFN  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iia--snTS~l~i~~la~~~~-~p~r~ig~Hf~~  114 (160)
                      .+..++++.++++++|+|+.|+|+...++.-+...  +-..+.++++|.  ||++...+.+|++.+. ++.++++.++++
T Consensus        73 g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g  152 (316)
T 2uyy_A           73 GARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSG  152 (316)
T ss_dssp             TCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             CCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccC
Confidence            35566777677889999999999988887655432  224556666554  4444334567777663 567899988875


Q ss_pred             CC---CCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         115 PV---PMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       115 P~---~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      ++   ...++++++.|   +++.++++..+++.+|+.++.+.+
T Consensus       153 ~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~  192 (316)
T 2uyy_A          153 NQQLSNDGMLVILAAG---DRGLYEDCSSCFQAMGKTSFFLGE  192 (316)
T ss_dssp             CHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHHEEEEEECSS
T ss_pred             ChhHHhhCCEEEEeCC---CHHHHHHHHHHHHHhcCCEEEeCC
Confidence            43   34567888776   578999999999999999888754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.05  E-value=1.8e-06  Score=70.60  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=53.7

Q ss_pred             hcCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhc-c
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIAS-V  100 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~-~  100 (160)
                      ..+++.++|+ +++++||+||+++              .+|.++++++++++++.+ |++++  +||..+.. +.++. .
T Consensus        56 ~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~-t~~~~~~  132 (309)
T 1ur5_A           56 DVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAM-TYLAAEV  132 (309)
T ss_dssp             CCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHH-HHHHHHH
T ss_pred             CeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHH-HHHHHHH
Confidence            3568888899 6899999999997              778899999999999998 77754  78865543 33332 2


Q ss_pred             cC-CCCcEEEe
Q psy3942         101 TN-RKDKFVGL  110 (160)
Q Consensus       101 ~~-~p~r~ig~  110 (160)
                      .. .|+|++|+
T Consensus       133 ~~~~~~rviG~  143 (309)
T 1ur5_A          133 SGFPKERVIGQ  143 (309)
T ss_dssp             HCCCGGGEEEC
T ss_pred             cCCCHHHEEEC
Confidence            23 36799998

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.00  E-value=4.3e-07  Score=72.82  Aligned_cols=110  Identities=12%  Similarity=0.130  Sum_probs=73.8

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCCCHH--HHhcccCCCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSLSIT--EIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l~i~--~la~~~~~p~r~ig~Hf~~P  115 (160)
                      .++.+++++++++++|+||.|+|.+..++.-++  ..+...+++++++...++..+.+  +++..+...    |+||+..
T Consensus        44 g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~----g~~~~~~  119 (287)
T 3pdu_A           44 GARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTAR----GGRFLEA  119 (287)
T ss_dssp             TCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEEC
T ss_pred             CCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEEC
Confidence            567788887888999999999999888886665  66777777777666443332222  444433211    3455443


Q ss_pred             CCCC--------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         116 VPMM--------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       116 ~~~~--------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      |-..        .++-++.   .++++++++..+++.+|+.++.+.+ +|
T Consensus       120 pv~g~~~~a~~g~l~~~~g---g~~~~~~~~~~ll~~~g~~~~~~g~-~g  165 (287)
T 3pdu_A          120 PVSGTKKPAEDGTLIILAA---GDQSLFTDAGPAFAALGKKCLHLGE-VG  165 (287)
T ss_dssp             CEECCHHHHHHTCEEEEEE---ECHHHHHHTHHHHHHHEEEEEECSS-TT
T ss_pred             CccCCHHHHhcCCEEEEEe---CCHHHHHHHHHHHHHhCCCEEEcCC-CC
Confidence            2111        2344443   3689999999999999999998865 44

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.97  E-value=4.9e-06  Score=64.29  Aligned_cols=107  Identities=17%  Similarity=0.181  Sum_probs=74.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHh----------cccCCCCcEEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIA----------SVTNRKDKFVG  109 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la----------~~~~~p~r~ig  109 (160)
                      .++.+ +++++++++|+||.|++..  ..++++. +.... +++++.+.+++++++.+.          +.+. ..++++
T Consensus        71 g~~~~-~~~~~~~~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~  144 (215)
T 2vns_A           71 AAQVT-FQEEAVSSPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVK  144 (215)
T ss_dssp             TSEEE-EHHHHTTSCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEE
T ss_pred             CCcee-cHHHHHhCCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEe
Confidence            35544 6667789999999999964  3455665 66666 789999999999887663          3332 236664


Q ss_pred             eecCCCCCCCceEEEecCCCC-------CHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         110 LHFFNPVPMMKLLEVIRTNDT-------SDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       110 ~Hf~~P~~~~~lVEvv~~~~T-------~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      .  +|+....++.+-+....+       +++..+.+..+++.+|+.++.+.+
T Consensus       145 ~--~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          145 A--FNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             E--CTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             c--cccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeecc
Confidence            2  365443333332222233       899999999999999999999864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.96  E-value=4.4e-06  Score=66.62  Aligned_cols=108  Identities=11%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeecCCCCC--HHHHhcccCCCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASNTSSLS--ITEIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasnTS~l~--i~~la~~~~~p~r~ig~Hf~~P  115 (160)
                      .+..+++++++++++|+|+.|+|.+..++.-+..  ++...++++++|.+.+++.+  ..+|+..+..  +  |+||++.
T Consensus        45 g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~--g~~~~~~  120 (295)
T 1yb4_A           45 GAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE--M--GADYLDA  120 (295)
T ss_dssp             TCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT--T--TEEEEEC
T ss_pred             CCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--c--CCeEEEc
Confidence            3566778877789999999999999887765543  67777888998886655533  4567766543  2  5666654


Q ss_pred             CCC--------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         116 VPM--------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       116 ~~~--------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      |-.        ..++-++.+   +++.++++..+++.+|+.++.+.+
T Consensus       121 p~~~~~~~a~~g~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~  164 (295)
T 1yb4_A          121 PVSGGEIGAREGTLSIMVGG---EQKVFDRVKPLFDILGKNITLVGG  164 (295)
T ss_dssp             CEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEES
T ss_pred             cCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCC
Confidence            321        134545544   789999999999999999888754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.96  E-value=2.8e-06  Score=69.07  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=75.0

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCCCHH--HHhcccCCCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSLSIT--EIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l~i~--~la~~~~~p~r~ig~Hf~~P  115 (160)
                      .++.+++++++++++|+||.|+|.+..++.-+|  ..+...+.++++|...++..+.+  +++..+...    |+||+..
T Consensus        64 g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~----g~~~v~~  139 (310)
T 3doj_A           64 GASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGK----GGRFVEG  139 (310)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEEC
T ss_pred             CCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEeC
Confidence            467788887888999999999999888885554  66777777887776544333322  444433211    3444432


Q ss_pred             CC--------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         116 VP--------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       116 ~~--------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      |-        ..+++-++.|   ++++++++..+++.+|+.++.+.+ +|
T Consensus       140 pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g  185 (310)
T 3doj_A          140 PVSGSKKPAEDGQLIILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VG  185 (310)
T ss_dssp             CEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TT
T ss_pred             CCCCChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cC
Confidence            21        1234556654   589999999999999999999865 54

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.94  E-value=5.2e-06  Score=66.46  Aligned_cols=107  Identities=17%  Similarity=0.237  Sum_probs=77.4

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSL--SITEIASVTNRKDKFVGLHFFN-  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~-  114 (160)
                      .+...+++++++.++|+|+.|+|....++.-+.  .++...++++++|.+.+++.  +..+|+..+...    |+||++ 
T Consensus        47 g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~----g~~~~~~  122 (301)
T 3cky_A           47 GAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK----GIDYVDA  122 (301)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT----TCEEEEC
T ss_pred             CCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEc
Confidence            466677887778899999999999988887665  37778889999999988877  455777665432    334432 


Q ss_pred             CCCCC-------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         115 PVPMM-------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       115 P~~~~-------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      |....       .+.-++.+   +++.++.+..+++.+|+.++.+.
T Consensus       123 p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~  165 (301)
T 3cky_A          123 PVSGGTKGAEAGTLTIMVGA---SEAVFEKIQPVLSVIGKDIYHVG  165 (301)
T ss_dssp             CEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeC
Confidence            22111       13444443   78999999999999999988774

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.93  E-value=4.8e-06  Score=68.21  Aligned_cols=66  Identities=21%  Similarity=0.422  Sum_probs=52.6

Q ss_pred             cCceecCChhhhcCCCcEEEEe--------------ccCChHHHHHHHHHHhhhCCCCc--EEeecCCCCCHHHHhccc-
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEA--------------IVENMDIKHKLFTSVDKIAPASA--ILASNTSSLSITEIASVT-  101 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEa--------------v~E~l~~K~~v~~~l~~~~~~~~--iiasnTS~l~i~~la~~~-  101 (160)
                      .+++.++|+ +++++||+||++              +.+|..+++++.+++++.+ |++  |++||    |+.-++..+ 
T Consensus        54 ~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN----Pv~~~t~~~~  127 (308)
T 2d4a_B           54 IRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN----PVDAMTYVMY  127 (308)
T ss_dssp             CCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS----SHHHHHHHHH
T ss_pred             eEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC----chHHHHHHHH
Confidence            457777888 689999999999              7888999999999999998 777  66677    666555443 


Q ss_pred             ---CC-CCcEEEe
Q psy3942         102 ---NR-KDKFVGL  110 (160)
Q Consensus       102 ---~~-p~r~ig~  110 (160)
                         .. |+|++|+
T Consensus       128 k~~~~p~~rviG~  140 (308)
T 2d4a_B          128 KKTGFPRERVIGF  140 (308)
T ss_dssp             HHHCCCGGGEEEC
T ss_pred             HhcCCChhhEEEe
Confidence               23 6799997

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.89  E-value=7.6e-06  Score=65.40  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=76.4

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCCC--HHHHhcccCCCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSLS--ITEIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l~--i~~la~~~~~p~r~ig~Hf~~P  115 (160)
                      .+..+++++++++++|+|+.|+|....++.-++  .++...++++++|.+.++..+  ..+|+..+...    |+||+..
T Consensus        48 g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~  123 (299)
T 1vpd_A           48 GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK----GVEMLDA  123 (299)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT----TCEEEEC
T ss_pred             CCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEe
Confidence            466777887778899999999999888876655  577788889998876655544  24676655332    3455432


Q ss_pred             CCCCc--------eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         116 VPMMK--------LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       116 ~~~~~--------lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                       +.++        -+.++.+.  +++.++.+..+++.+|+.++.+.+
T Consensus       124 -pv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~g~~~~~~~~  167 (299)
T 1vpd_A          124 -PVSGGEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGD  167 (299)
T ss_dssp             -CEESHHHHHHHTCEEEEEES--CHHHHHHHHHHHHTTEEEEEEEES
T ss_pred             -cCCCCHhHHhcCCEEEEeCC--CHHHHHHHHHHHHHHcCCeEEeCC
Confidence             1211        14555543  789999999999999999888743

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.89  E-value=1.9e-05  Score=62.55  Aligned_cols=98  Identities=8%  Similarity=0.073  Sum_probs=77.0

Q ss_pred             hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCC
Q psy3942          50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND  129 (160)
Q Consensus        50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~  129 (160)
                      ++++||  |=|+|.+ .+ .+++++|...+++++++...+++.+..-+.....++.+++|.|++..     ...++.+. 
T Consensus        40 ~~~~aD--ilavP~~-ai-~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g-----~~~~i~a~-  109 (232)
T 3dfu_A           40 DIRDFE--LVVIDAH-GV-EGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQ-----DRWVASAL-  109 (232)
T ss_dssp             GGGGCS--EEEECSS-CH-HHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEET-----TEEEEEES-
T ss_pred             HhccCC--EEEEcHH-HH-HHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCC-----CceeeeCC-
Confidence            478899  6789997 33 67889999989999999988877877766665566789999997643     24555443 


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEe--cCcCcc
Q psy3942         130 TSDATYNAVTEWGKSIGKTTIVC--KDTPGF  158 (160)
Q Consensus       130 T~~~~~~~~~~~~~~lgk~pv~v--~d~pGf  158 (160)
                       +++.++.+..|++.+|+.|+.+  .+.++|
T Consensus       110 -d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~  139 (232)
T 3dfu_A          110 -DELGETIVGLLVGELGGSIVEIADDKRAQL  139 (232)
T ss_dssp             -SHHHHHHHHHHHHHTTCEECCCCGGGHHHH
T ss_pred             -CHHHHHHHHHHHHHhCCEEEEeCHHHHhHH
Confidence             7889999999999999999998  345554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.81  E-value=3.5e-05  Score=59.53  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=73.7

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC--------------CHHHHhcccCCCCcEEE
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL--------------SITEIASVTNRKDKFVG  109 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l--------------~i~~la~~~~~p~r~ig  109 (160)
                      .++. ++++++|+||.|+|  .....+++.++.. . +++++.+.+.++              +...|++.+. ..+++.
T Consensus        73 ~~~~-~~~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~  146 (220)
T 4huj_A           73 AVEL-KDALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVK  146 (220)
T ss_dssp             ECCH-HHHTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEE
T ss_pred             cChH-HHHhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEE
Confidence            3444 57899999999998  5677888888876 4 577888888777              4667777775 446666


Q ss_pred             eecCCCCCCCc---------eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         110 LHFFNPVPMMK---------LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       110 ~Hf~~P~~~~~---------lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      ...+.|+....         ..-++.  ..+++..+.+..+++.+|+.|+.+.+
T Consensus       147 ~~~~~~~~v~~~g~~~~~~~~~v~~~--g~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          147 AFNTLPAAVLAADPDKGTGSRVLFLS--GNHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             ESCSSCHHHHTSCSBCSSCEEEEEEE--ESCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             CCCCCCHHHhhhCcccCCCCeeEEEe--CCCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            54333333221         223333  45699999999999999999998754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.81  E-value=0.00012  Score=59.77  Aligned_cols=105  Identities=19%  Similarity=0.172  Sum_probs=73.7

Q ss_pred             ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--HHhcccC-CCCcEEEeecCCCCC--CCc
Q psy3942          46 KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--EIASVTN-RKDKFVGLHFFNPVP--MMK  120 (160)
Q Consensus        46 ~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--~la~~~~-~p~r~ig~Hf~~P~~--~~~  120 (160)
                      +++++++++|+||.|+|.+...+  .+.++...++++++|.+.++..|.+  +++..+. +.-+++....+.|++  ...
T Consensus        80 s~~e~~~~aDvVi~avp~~~~~~--~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~  157 (317)
T 4ezb_A           80 DDVAGIACADVVLSLVVGAATKA--VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEK  157 (317)
T ss_dssp             SSGGGGGGCSEEEECCCGGGHHH--HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGG
T ss_pred             CHHHHHhcCCEEEEecCCHHHHH--HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCC
Confidence            66678899999999999998776  3588888888888887665444333  4444442 223455443344433  446


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         121 LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       121 lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      +..++.|+.+     +++..+++.+|+.++.+.+.+|
T Consensus       158 l~i~vgg~~~-----~~~~~ll~~~g~~v~~~g~~~g  189 (317)
T 4ezb_A          158 VPILVAGRRA-----VEVAERLNALGMNLEAVGETPG  189 (317)
T ss_dssp             SEEEEESTTH-----HHHHHHHHTTTCEEEEEESSTT
T ss_pred             EEEEEeCChH-----HHHHHHHHHhCCCeEEeCCCcC
Confidence            7777777654     7888999999999998876555

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.81  E-value=1.5e-05  Score=67.80  Aligned_cols=113  Identities=13%  Similarity=0.129  Sum_probs=75.6

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccCChH---------HHHHHHHHHhhhCCC---CcEEeecCCCCCHH----HHhccc
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVENMD---------IKHKLFTSVDKIAPA---SAILASNTSSLSIT----EIASVT  101 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E~l~---------~K~~v~~~l~~~~~~---~~iiasnTS~l~i~----~la~~~  101 (160)
                      .+++++++++++++++||+||.|+|....         ++ ++++++...+++   +++|.. .|+.++.    .+...+
T Consensus        61 ~g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~-~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l  138 (436)
T 1mv8_A           61 TGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIE-TVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLI  138 (436)
T ss_dssp             TTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHH-HHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHH
T ss_pred             cCceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHH-HHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHH
Confidence            45789999997789999999999998775         55 467889888888   887763 3444432    233332


Q ss_pred             CC--CCcE-EEe-ecCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         102 NR--KDKF-VGL-HFFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       102 ~~--p~r~-ig~-Hf~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      ..  ..++ +.+ -+++|....+-.         .|+.|. +++++.+.+.++++.+|+ |+.+.|
T Consensus       139 ~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~-~v~~~~  202 (436)
T 1mv8_A          139 EDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDA-PIIRKT  202 (436)
T ss_dssp             HHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSS-CEEEEE
T ss_pred             HHhcCcccCCcEEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCC-CEEcCC
Confidence            21  1111 011 135777766543         456555 478999999999999998 555543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.80  E-value=1.5e-05  Score=65.10  Aligned_cols=107  Identities=9%  Similarity=0.093  Sum_probs=70.5

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHH-HHhhhCCCCcEEe-ecCCCCCHH-HHhcccCCCCcEEEeecCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT-SVDKIAPASAILA-SNTSSLSIT-EIASVTNRKDKFVGLHFFNPV  116 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~-~l~~~~~~~~iia-snTS~l~i~-~la~~~~~p~r~ig~Hf~~P~  116 (160)
                      .++.+++++++++++|+||.|+|++..++.-++. .+-..+.++++|. ++|+....+ +++..+...    |+||+..|
T Consensus        74 g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~----g~~~~~~p  149 (320)
T 4dll_A           74 GATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL----GIAHLDTP  149 (320)
T ss_dssp             TCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECC
T ss_pred             CCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc----CCEEEeCC
Confidence            4677888888899999999999998888766552 3444455555544 444443333 444443211    44554432


Q ss_pred             C--------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         117 P--------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       117 ~--------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      -        ..++..++.|   ++++++++..+++.+ +.++.+.+
T Consensus       150 v~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~  191 (320)
T 4dll_A          150 VSGGTVGAEQGTLVIMAGG---KPADFERSLPLLKVF-GRATHVGP  191 (320)
T ss_dssp             EECHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHH-EEEEEEES
T ss_pred             CcCCHhHHhcCCeeEEeCC---CHHHHHHHHHHHHhc-CCEEEeCC
Confidence            1        2245666654   689999999999999 88888865

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.61  E-value=4.8e-05  Score=63.42  Aligned_cols=113  Identities=12%  Similarity=0.058  Sum_probs=81.4

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH------HHhcccCCCCcEEEeec
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT------EIASVTNRKDKFVGLHF  112 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~------~la~~~~~p~r~ig~Hf  112 (160)
                      .++++++|++++++++|+||.|+|..  ..+++++++...++++++|.|.+.++...      .+.+.+.. .++.  -.
T Consensus        85 ~~i~~t~d~~ea~~~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~--vl  159 (356)
T 3k96_A           85 ETLKAYCDLKASLEGVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMA--VI  159 (356)
T ss_dssp             TTEEEESCHHHHHTTCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEE--EE
T ss_pred             CCeEEECCHHHHHhcCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEE--EE
Confidence            45788899977899999999999975  78899999999999999999998888765      23333331 1222  23


Q ss_pred             CCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         113 FNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       113 ~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      ..|.+..     ..-.++-+ ..+++..+.+..++...|..+.+..|..|
T Consensus       160 sgP~~a~ev~~g~pt~~via-~~~~~~~~~v~~lf~~~~~rv~~~~Di~g  208 (356)
T 3k96_A          160 SGPSLATEVAANLPTAVSLA-SNNSQFSKDLIERLHGQRFRVYKNDDMIG  208 (356)
T ss_dssp             ESSCCHHHHHTTCCEEEEEE-ESCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred             ECccHHHHHHcCCCeEEEEe-cCCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence            4554421     11122222 35788999999999999998888887654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.60  E-value=9.9e-06  Score=69.63  Aligned_cols=115  Identities=11%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHH-------------HHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIK-------------HKLFTSVDKIAPASAILASNTSSLSIT---EIASVTN  102 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K-------------~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~  102 (160)
                      .++++++++++++++||+||.|+|.....+             .++.+.+...++++++| .++|++++.   +++..+.
T Consensus        68 ~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~STv~~g~~~~l~~~l~  146 (467)
T 2q3e_A           68 KNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIV-TEKSTVPVRAAESIRRIFD  146 (467)
T ss_dssp             TTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEE-EECSCCCTTHHHHHHHHHH
T ss_pred             CCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEE-EECCcCCchHHHHHHHHHH
Confidence            468888998778899999999998776543             57788888888888877 444455543   3443332


Q ss_pred             CCC-cEEE-eecCCCCCCCceEE---------Ee-cCCC--CCHHHHHHHHHHHHHc-CCeEEEecC
Q psy3942         103 RKD-KFVG-LHFFNPVPMMKLLE---------VI-RTND--TSDATYNAVTEWGKSI-GKTTIVCKD  154 (160)
Q Consensus       103 ~p~-r~ig-~Hf~~P~~~~~lVE---------vv-~~~~--T~~~~~~~~~~~~~~l-gk~pv~v~d  154 (160)
                      ... ..+. .-+++|....+-..         |+ .++.  +++++.+.+..+++.+ |+.++.+.+
T Consensus       147 ~~~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~  213 (467)
T 2q3e_A          147 ANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTN  213 (467)
T ss_dssp             HTCCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEEC
T ss_pred             HhCCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecC
Confidence            211 1111 11577887776654         44 4444  4889999999999998 888888754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.55  E-value=0.00013  Score=55.96  Aligned_cols=99  Identities=10%  Similarity=0.020  Sum_probs=70.2

Q ss_pred             hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC---------------HHHHhcccCCCCcEEE-eecC
Q psy3942          50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS---------------ITEIASVTNRKDKFVG-LHFF  113 (160)
Q Consensus        50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~---------------i~~la~~~~~p~r~ig-~Hf~  113 (160)
                      +++++|+|+.|++  ...-++++.++...++ ++++.+.+++++               ...+++.+. ..++++ +|+.
T Consensus        54 ~~~~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~  129 (209)
T 2raf_A           54 ATTLGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTT  129 (209)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTS
T ss_pred             HhccCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecc
Confidence            6789999999999  4445688999988777 899988888776               345555554 357887 6654


Q ss_pred             C-CCCC-------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         114 N-PVPM-------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       114 ~-P~~~-------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      . |...       .+..-++.  .++++..+.+.++++.+|..++.+.|
T Consensus       130 ~~p~~~~~~~~g~~~~~~~~~--g~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          130 FAATLQSGQVNGKEPTTVLVA--GNDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             CHHHHHHSEETTTEECEEEEE--ESCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             cHhhccccccCCCCCceeEEc--CCCHHHHHHHHHHHHHcCCceEeCCC
Confidence            3 2111       12222232  34688999999999999999988865

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.53  E-value=3.8e-05  Score=62.24  Aligned_cols=109  Identities=11%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeecCCCCCHH-HHhcccC-CCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASNTSSLSIT-EIASVTN-RKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasnTS~l~i~-~la~~~~-~p~r~ig~Hf~~P  115 (160)
                      .+..+++++++++++|+||.|+|.+..++.-+ .  .+....+...++-++|++...+ +++..+. +.-+++....+.+
T Consensus        52 g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~-~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~  130 (306)
T 3l6d_A           52 GAHLCESVKAALSASPATIFVLLDNHATHEVL-GMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAY  130 (306)
T ss_dssp             TCEECSSHHHHHHHSSEEEECCSSHHHHHHHH-TSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred             CCeecCCHHHHHhcCCEEEEEeCCHHHHHHHh-cccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccC
Confidence            45667888778899999999999988777544 4  5666655555555555554443 4444432 2335555433332


Q ss_pred             CCC---CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         116 VPM---MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       116 ~~~---~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      ++.   ..++-++.|   ++++++++..+++.+|+.++.+
T Consensus       131 ~~~~~~~~~~i~~gg---~~~~~~~~~~ll~~lg~~~~~~  167 (306)
T 3l6d_A          131 PRNVGHRESHSIHTG---DREAFEQHRALLEGLAGHTVFL  167 (306)
T ss_dssp             GGGTTCTTCEEEEEE---CHHHHHHHHHHHHTTCSEEEEC
T ss_pred             cccccCCceEEEEcC---CHHHHHHHHHHHHHhcCCEEEe
Confidence            211   134434433   6999999999999998888888

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.50  E-value=1.5e-05  Score=63.66  Aligned_cols=107  Identities=13%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHh---hhCCCCcEEeecCCCCCHHHHhc---ccCCCCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVD---KIAPASAILASNTSSLSITEIAS---VTNRKDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~---~~~~~~~iiasnTS~l~i~~la~---~~~~p~r~ig~Hf~  113 (160)
                      .++.+++++++++++|+|+.|+|....++. ++.+++   ..+++++++.+ +|++++..+..   ....  +  |.||+
T Consensus        43 g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~--~--g~~~~  116 (296)
T 2gf2_A           43 GEQVVSSPADVAEKADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEK--M--GAVFM  116 (296)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHH--T--TCEEE
T ss_pred             CCeecCCHHHHHhcCCEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH--c--CCEEE
Confidence            466777887778899999999998888775 444433   35678999998 88998875443   2221  2  44555


Q ss_pred             CCCCCC-------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         114 NPVPMM-------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       114 ~P~~~~-------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      +.|-..       +-..++.+  .+++.++++..+++.+|+.++.+.+
T Consensus       117 ~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~  162 (296)
T 2gf2_A          117 DAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGA  162 (296)
T ss_dssp             ECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEES
T ss_pred             EcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCC
Confidence            532111       22445555  4688899999999999999887754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.46  E-value=0.00039  Score=56.69  Aligned_cols=110  Identities=12%  Similarity=0.057  Sum_probs=74.9

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--------HHH-hcccCCCCcEEEe
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--------TEI-ASVTNRKDKFVGL  110 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--------~~l-a~~~~~p~r~ig~  110 (160)
                      ++..+++++++++++|+||.|+|.  ...++++++|...+++++++.|.++++++        .++ ...+.++  +  .
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~--~--~  150 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP--M--S  150 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC--E--E
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC--E--E
Confidence            467778887778999999999997  46889999999999999999999988864        222 2222222  1  1


Q ss_pred             ecCCCCCC-----CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942         111 HFFNPVPM-----MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP  156 (160)
Q Consensus       111 Hf~~P~~~-----~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~p  156 (160)
                      ....|...     .....++.+ ..+++..+.+..++...|..+....|..
T Consensus       151 v~~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~  200 (354)
T 1x0v_A          151 VLMGANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVD  200 (354)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHH
T ss_pred             EEECCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCch
Confidence            22334321     111122222 3467888999999999999877776653

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.41  E-value=0.00021  Score=55.96  Aligned_cols=103  Identities=16%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC-CHHHHhcccCCCCcEEEeecCCCCCC--Cce
Q psy3942          45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL-SITEIASVTNRKDKFVGLHFFNPVPM--MKL  121 (160)
Q Consensus        45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l-~i~~la~~~~~p~r~ig~Hf~~P~~~--~~l  121 (160)
                      ++++++++++|+||.|+|.+...+. + .++...+++ .++-.+|.+. ...+|++.+..+. +++.+++.++..  ...
T Consensus        48 ~~~~~~~~~aDvvi~~v~~~~~~~~-~-~~~~~~~~~-~vi~~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~  123 (264)
T 1i36_A           48 ETSEEDVYSCPVVISAVTPGVALGA-A-RRAGRHVRG-IYVDINNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADI  123 (264)
T ss_dssp             ECCHHHHHTSSEEEECSCGGGHHHH-H-HHHHTTCCS-EEEECSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGC
T ss_pred             CCHHHHHhcCCEEEEECCCHHHHHH-H-HHHHHhcCc-EEEEccCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCC
Confidence            5565678999999999999876665 3 566666666 4444433322 2346777776655 778887776541  122


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       122 VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      .-++.|...     +++.. ++.+|+.++.+.+.+|
T Consensus       124 ~~~~~g~~~-----~~~~~-l~~~g~~~~~~~~~~g  153 (264)
T 1i36_A          124 RIIASGRDA-----EEFMK-LNRYGLNIEVRGREPG  153 (264)
T ss_dssp             EEEEESTTH-----HHHHG-GGGGTCEEEECSSSTT
T ss_pred             eEEecCCcH-----HHhhh-HHHcCCeeEECCCCcC
Confidence            334444332     66777 8999999888865455

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.34  E-value=9.6e-05  Score=60.47  Aligned_cols=60  Identities=20%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             CChhhhcCCCcEEEEe--------------ccCChHHHHHHHHHHhhhCCCCc--EEeecCCCCCHHHHhccc----CC-
Q psy3942          45 SKVEDSVSQSDLVIEA--------------IVENMDIKHKLFTSVDKIAPASA--ILASNTSSLSITEIASVT----NR-  103 (160)
Q Consensus        45 ~~~~~al~~adlViEa--------------v~E~l~~K~~v~~~l~~~~~~~~--iiasnTS~l~i~~la~~~----~~-  103 (160)
                      +++ +++++||+||.|              +.++..+|+++.+++++.+ |++  +++||    |+.-++..+    .. 
T Consensus        67 ~~~-~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tN----Pv~~~~~~~~~~s~~p  140 (316)
T 1ldn_A           67 GDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATN----PVDILTYATWKFSGLP  140 (316)
T ss_dssp             CCG-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSS----SHHHHHHHHHHHHTCC
T ss_pred             CcH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCC----chHHHHHHHHHHhCCC
Confidence            455 689999999999              5677899999999999998 566  55566    665555433    23 


Q ss_pred             CCcEEEe
Q psy3942         104 KDKFVGL  110 (160)
Q Consensus       104 p~r~ig~  110 (160)
                      |.|++|+
T Consensus       141 ~~rviG~  147 (316)
T 1ldn_A          141 HERVIGS  147 (316)
T ss_dssp             GGGEEEC
T ss_pred             HHHEEec
Confidence            5688886

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.32  E-value=7.1e-05  Score=62.20  Aligned_cols=95  Identities=15%  Similarity=0.137  Sum_probs=67.6

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC---CHHHHhcccCCCCcE--EEeecCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL---SITEIASVTNRKDKF--VGLHFFN  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l---~i~~la~~~~~p~r~--ig~Hf~~  114 (160)
                      .+.+++++++.++++|+|+.++|.+.+.+.-+.+++-+.++++++|. |+|+.   ...+|...+.. .++  .|+++|.
T Consensus       207 g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gaili-n~srg~~vd~~aL~~aL~~-~~i~gaglDv~~  284 (348)
T 2w2k_A          207 GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIV-NTARGPVISQDALIAALKS-GKLLSAGLDVHE  284 (348)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHT-TSEEEEEESSCT
T ss_pred             CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEE-ECCCCchhCHHHHHHHHHh-CCceEEEeccCC
Confidence            35556678777899999999999998888766666666789999886 56554   44578777754 344  6899999


Q ss_pred             CCC-----CCceEEEecCCCCCHHHHH
Q psy3942         115 PVP-----MMKLLEVIRTNDTSDATYN  136 (160)
Q Consensus       115 P~~-----~~~lVEvv~~~~T~~~~~~  136 (160)
                      |.+     +..+..|+.+|.++..+.+
T Consensus       285 ~EP~~~~~L~~~~nviltPH~~~~t~e  311 (348)
T 2w2k_A          285 FEPQVSKELIEMKHVTLTTHIGGVAIE  311 (348)
T ss_dssp             TTTSCCHHHHTSSSEEECCSCTTCSHH
T ss_pred             CCCCCCchhhcCCCEEEcCcCCCCCHH
Confidence            532     4456678877777654443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.30  E-value=0.00046  Score=59.13  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=69.6

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHH---------HHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCc
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDI---------KHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNRKDK  106 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~---------K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r  106 (160)
                      .++++++|+++++++||+||.|+|++.+.         =.++.+.+.+ +++++++. +.|++++.   +++..+..  +
T Consensus        95 ~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~  170 (432)
T 3pid_A           95 LNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D  170 (432)
T ss_dssp             CCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C
T ss_pred             CCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c
Confidence            47999999978899999999999998632         2456677777 67777665 45555543   56655432  2


Q ss_pred             EEEeecCCCCCCCce------E---EEecCCCCCHHHHHHHHHHHHH--cCC-eEEEec
Q psy3942         107 FVGLHFFNPVPMMKL------L---EVIRTNDTSDATYNAVTEWGKS--IGK-TTIVCK  153 (160)
Q Consensus       107 ~ig~Hf~~P~~~~~l------V---Evv~~~~T~~~~~~~~~~~~~~--lgk-~pv~v~  153 (160)
                        ++. |+|....+-      .   -|+.|.  +++..+++..++..  +++ .|+++.
T Consensus       171 --~v~-~sPe~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~  224 (432)
T 3pid_A          171 --NVI-FSPEFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFT  224 (432)
T ss_dssp             --CEE-ECCCCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEEC
T ss_pred             --cEe-ecCccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEec
Confidence              333 388776552      1   345553  24566778888876  554 366654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.26  E-value=0.00011  Score=58.17  Aligned_cols=103  Identities=6%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             hhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhcccCCCC-cEEEeecCCCCC---CCc
Q psy3942          47 VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVTNRKD-KFVGLHFFNPVP---MMK  120 (160)
Q Consensus        47 ~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~~~p~-r~ig~Hf~~P~~---~~~  120 (160)
                      +++++.++|+|+.|+|....++. ++.++...+++++++.  ||.+..+..+|...+.... +++....++++.   ...
T Consensus        49 ~~~~~~~~D~vi~~v~~~~~~~~-v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~  127 (289)
T 2cvz_A           49 PLERVAEARVIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGT  127 (289)
T ss_dssp             CGGGGGGCSEEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTC
T ss_pred             HHHHHhCCCEEEEeCCChHHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCC
Confidence            65678899999999998877765 6688888888898887  4444444556776654321 333321111110   112


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         121 LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       121 lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      +.-++.   ++++..+.+..++ .+|+.++.+.|
T Consensus       128 ~~~~~~---~~~~~~~~~~~ll-~~g~~~~~~~~  157 (289)
T 2cvz_A          128 LTVMLG---GPEEAVERVRPFL-AYAKKVVHVGP  157 (289)
T ss_dssp             EEEEEE---SCHHHHHHHGGGC-TTEEEEEEEES
T ss_pred             eEEEEC---CCHHHHHHHHHHH-hhcCCeEEcCC
Confidence            233332   3789999999999 99998888755

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.24  E-value=0.00023  Score=58.95  Aligned_cols=111  Identities=12%  Similarity=0.016  Sum_probs=75.7

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhh----hCCCCcEEeecCCCCCHH-----HH----hcccCCCCc
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDK----IAPASAILASNTSSLSIT-----EI----ASVTNRKDK  106 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~----~~~~~~iiasnTS~l~i~-----~l----a~~~~~p~r  106 (160)
                      ++..+++++++++++|+||.|+|.  ...++++.+|..    .+++++++.|.+.++++.     .+    ......+  
T Consensus        90 ~i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~--  165 (375)
T 1yj8_A           90 NIVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP--  165 (375)
T ss_dssp             TEEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC--
T ss_pred             CeEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC--
Confidence            577788887778999999999996  678899999998    889999999998887651     12    1222111  


Q ss_pred             EEEeecCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         107 FVGLHFFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       107 ~ig~Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      +.  -...|....     ....++.+ ..+++..+.+..++...|..+....|..|
T Consensus       166 ~~--v~~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~  218 (375)
T 1yj8_A          166 CS--ALSGANIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIE  218 (375)
T ss_dssp             EE--EEECSCCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred             EE--EEeCCchHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            11  123343211     11222322 24678889999999999998887777643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.11  E-value=0.0011  Score=56.81  Aligned_cols=113  Identities=14%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccCCh--------HHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCC--C
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVENM--------DIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNR--K  104 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E~l--------~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~--p  104 (160)
                      .+++++++|+++++++||+||.|+|...        ...+++++.+.+.+++++++...| ++++.   +++..+..  +
T Consensus        63 ~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~  141 (450)
T 3gg2_A           63 AGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELD  141 (450)
T ss_dssp             TTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHH
T ss_pred             cCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhcc
Confidence            4679999999878999999999998875        377889999999999998876544 45433   34332210  1


Q ss_pred             -----CcEEEeecCCCCCCCceEE---------EecCCCCCHHHHHHHHHHHHHcCC--eEEEecC
Q psy3942         105 -----DKFVGLHFFNPVPMMKLLE---------VIRTNDTSDATYNAVTEWGKSIGK--TTIVCKD  154 (160)
Q Consensus       105 -----~r~ig~Hf~~P~~~~~lVE---------vv~~~~T~~~~~~~~~~~~~~lgk--~pv~v~d  154 (160)
                           ..+--  .++|....+-.-         |+-|. .++++.+.+..+++.+++  .++.+.|
T Consensus       142 ~~~~~~d~~v--~~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d  204 (450)
T 3gg2_A          142 KREVLIDFDI--ASNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMD  204 (450)
T ss_dssp             HTTCCCCEEE--EECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEEC
T ss_pred             ccCcCcceeE--EechhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence                 11211  356766655432         44442 468899999999999987  4666654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.05  E-value=0.00011  Score=61.25  Aligned_cols=101  Identities=9%  Similarity=0.072  Sum_probs=68.4

Q ss_pred             CceecCChhhhcCCC---cEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--HHhcccC-CCCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVSQS---DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--EIASVTN-RKDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~a---dlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--~la~~~~-~p~r~ig~Hf~  113 (160)
                      .+..+++++++++++   |+||-|+|.+  .-.+++..|...++++++|...+++.+.+  +++..+. +--++++..-+
T Consensus        65 g~~~~~s~~e~~~~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVs  142 (358)
T 4e21_A           65 GIAGARSIEEFCAKLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTS  142 (358)
T ss_dssp             TCBCCSSHHHHHHHSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             CCEEeCCHHHHHhcCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCC
Confidence            466778887777888   9999999999  45578899999999999998877776544  4544442 22234443222


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcC
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIG  146 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lg  146 (160)
                      .++.   ..+  =++.|  .++++++++..+++.+|
T Consensus       143 Gg~~~a~~G~--~im~G--G~~~a~~~~~~ll~~lg  174 (358)
T 4e21_A          143 GGIFGLERGY--CLMIG--GEKQAVERLDPVFRTLA  174 (358)
T ss_dssp             CGGGHHHHCC--EEEEE--SCHHHHHHTHHHHHHHS
T ss_pred             CCHHHHhcCC--eeeec--CCHHHHHHHHHHHHHhc
Confidence            1111   011  13333  47899999999999999

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.04  E-value=0.0011  Score=53.58  Aligned_cols=64  Identities=17%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             cCChhhhcCCCcEEEEeccCC------------------hHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhccc--
Q psy3942          44 SSKVEDSVSQSDLVIEAIVEN------------------MDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVT--  101 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~------------------l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~--  101 (160)
                      ++++ +++++||+||.|++..                  +++++++++++.+.++ ++++  .||...+ +++++...  
T Consensus        61 ~~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~-~~~~~~~~~~  137 (309)
T 1hyh_A           61 INDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDV-ITALFQHVTG  137 (309)
T ss_dssp             ESCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHH-HHHHHHHHHC
T ss_pred             eCCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHH-HHHHHHHhcC
Confidence            5678 6899999999999863                  3467899999999885 5544  6776665 44455432  


Q ss_pred             CCCCcEEEe
Q psy3942         102 NRKDKFVGL  110 (160)
Q Consensus       102 ~~p~r~ig~  110 (160)
                      -.|.|++|+
T Consensus       138 ~~~~rvig~  146 (309)
T 1hyh_A          138 FPAHKVIGT  146 (309)
T ss_dssp             CCGGGEEEC
T ss_pred             CCHHHEeec
Confidence            346799998

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.02  E-value=0.00022  Score=58.68  Aligned_cols=92  Identities=16%  Similarity=0.132  Sum_probs=63.8

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC---CHHHHhcccCC-CCcEEEeecCCCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL---SITEIASVTNR-KDKFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l---~i~~la~~~~~-p~r~ig~Hf~~P~  116 (160)
                      +.++ ++++.++++|+|+.++|.+.+.+.-+.+++-+.++++++|. |+|+.   ...+|...+.. .-...|+++|+|.
T Consensus       199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI-NISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            4555 77677899999999999987776655555666788999886 55554   44677776643 3345789999876


Q ss_pred             C------CCceEEEecCCCCCHHH
Q psy3942         117 P------MMKLLEVIRTNDTSDAT  134 (160)
Q Consensus       117 ~------~~~lVEvv~~~~T~~~~  134 (160)
                      +      +..+.+|+.+|.++..+
T Consensus       277 pl~~~~~l~~~~nvi~tPh~~~~t  300 (330)
T 2gcg_A          277 PLPTNHPLLTLKNCVILPHIGSAT  300 (330)
T ss_dssp             SCCTTCGGGGCTTEEECCSCTTCB
T ss_pred             CCCCCChhhcCCCEEECCCCCCCc
Confidence            4      33445788766665443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=96.98  E-value=0.00098  Score=55.56  Aligned_cols=54  Identities=20%  Similarity=0.215  Sum_probs=46.0

Q ss_pred             Cce-ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH
Q psy3942          40 RIK-GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT   95 (160)
Q Consensus        40 ~i~-~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~   95 (160)
                      ++. +++++++++.++|+||.|++...  +++++++|...++++++|.+++++..+.
T Consensus        68 ~~~~~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G~~  122 (404)
T 3c7a_A           68 RPKVITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAGFE  122 (404)
T ss_dssp             CCSEEESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTTHH
T ss_pred             cceEEeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCccHH
Confidence            454 67888777899999999999986  6899999999999999999987776644

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.88  E-value=0.0019  Score=55.67  Aligned_cols=113  Identities=14%  Similarity=0.203  Sum_probs=74.3

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCCh-------------HHHHHHHHHHhhhCCCCcEEeecCCCCCH--H-HHhcccC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENM-------------DIKHKLFTSVDKIAPASAILASNTSSLSI--T-EIASVTN  102 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l-------------~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~-~la~~~~  102 (160)
                      .++++++++.+++++||+||-|+|...             ..-.++++.|.+.++++++|. +.|++++  + +++..+.
T Consensus        72 ~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~gt~~~l~~~l~  150 (481)
T 2o3j_A           72 RNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVV-EKSTVPVKAAESIGCILR  150 (481)
T ss_dssp             TTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHH
T ss_pred             CCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEE-ECCCCCCCHHHHHHHHHH
Confidence            468899998778999999999998753             356788899999999998776 3334443  2 3333221


Q ss_pred             C--C----CcEEEeecCCCCCCCceE---------EEecCCCCC---HHHHHHHHHHHHHcCC-eEEEecC
Q psy3942         103 R--K----DKFVGLHFFNPVPMMKLL---------EVIRTNDTS---DATYNAVTEWGKSIGK-TTIVCKD  154 (160)
Q Consensus       103 ~--p----~r~ig~Hf~~P~~~~~lV---------Evv~~~~T~---~~~~~~~~~~~~~lgk-~pv~v~d  154 (160)
                      .  .    ..+ .+ .++|....+--         .|+-|..++   +++.+.+..+++.+|+ .++.+.|
T Consensus       151 ~~~~~~~~~d~-~v-~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d  219 (481)
T 2o3j_A          151 EAQKNNENLKF-QV-LSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTN  219 (481)
T ss_dssp             HHTC----CCE-EE-EECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEE
T ss_pred             HhhCcCcCCce-EE-EeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecC
Confidence            1  1    111 11 35665554432         466554443   3688899999999996 6776644

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.86  E-value=5.1e-05  Score=62.64  Aligned_cols=93  Identities=23%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCC-CCcEEEeecCCCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNR-KDKFVGLHFFNPV  116 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~-p~r~ig~Hf~~P~  116 (160)
                      +.+ .++++.++++|+|+.++|.+.+.+.-+.+++-+.++++++|. |+|.-++.   +|...+.. +-.-.|+|+|+|.
T Consensus       193 ~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~E  270 (334)
T 2dbq_A          193 AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI-NIARGKVVDTNALVKALKEGWIAGAGLDVFEEE  270 (334)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCeeEEEecCCCCC
Confidence            344 477677899999999999998877655556666788999884 55555443   46666643 2234789999943


Q ss_pred             C-----CCceEEEecCCCCCHHHH
Q psy3942         117 P-----MMKLLEVIRTNDTSDATY  135 (160)
Q Consensus       117 ~-----~~~lVEvv~~~~T~~~~~  135 (160)
                      +     +..+..|+.+|.++..+.
T Consensus       271 P~~~~~L~~~~~vi~tPh~~~~t~  294 (334)
T 2dbq_A          271 PYYNEELFKLDNVVLTPHIGSASF  294 (334)
T ss_dssp             SCCCHHHHHCTTEEECSSCTTCSH
T ss_pred             CCCCchhhcCCCEEECCccCCCcH
Confidence            2     334557887666654433

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.84  E-value=0.00019  Score=59.33  Aligned_cols=94  Identities=19%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH---HHHhcccCC-CCcEEEeecCC--C
Q psy3942          42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI---TEIASVTNR-KDKFVGLHFFN--P  115 (160)
Q Consensus        42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i---~~la~~~~~-p~r~ig~Hf~~--P  115 (160)
                      ....++++.++++|+|+.++|.+.+.+.-+-+++-+.++++++|. |+|.-.+   .+|.+.+.. .-+..|+++|.  |
T Consensus       204 ~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailI-n~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP  282 (333)
T 3ba1_A          204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP  282 (333)
T ss_dssp             EEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTT
T ss_pred             eecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEE-ECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCC
Confidence            445678777899999999999987766544344444568888885 5555444   477777753 35778999998  4


Q ss_pred             C---CCCceEEEecCCCCCHHHHH
Q psy3942         116 V---PMMKLLEVIRTNDTSDATYN  136 (160)
Q Consensus       116 ~---~~~~lVEvv~~~~T~~~~~~  136 (160)
                      .   ++..+..|+.+|.++..+.+
T Consensus       283 ~~~~~L~~~~nviltPH~~~~t~e  306 (333)
T 3ba1_A          283 EVPEKLFGLENVVLLPHVGSGTVE  306 (333)
T ss_dssp             CCCGGGGGCTTEEECSSCTTCSHH
T ss_pred             CCcchhhcCCCEEECCcCCCCCHH
Confidence            2   23445567777666554433

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.66  E-value=0.0028  Score=49.67  Aligned_cols=98  Identities=11%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH-HHhcccCCCCcEE-EeecC-----CCCCCCce
Q psy3942          49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT-EIASVTNRKDKFV-GLHFF-----NPVPMMKL  121 (160)
Q Consensus        49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~-~la~~~~~p~r~i-g~Hf~-----~P~~~~~l  121 (160)
                      ++++++|+||-|++... + .++++++...++++++|.+.+.++... .+...+  |+ ++ |.+++     .| .   .
T Consensus        59 ~~~~~~d~vi~~v~~~~-~-~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~--~~-~~~g~~~~~~~~~~p-~---~  129 (291)
T 1ks9_A           59 DFLATSDLLLVTLKAWQ-V-SDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQ--QP-LLMGTTTHAARRDGN-V---I  129 (291)
T ss_dssp             HHHHTCSEEEECSCGGG-H-HHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCC--SC-EEEEEECCEEEEETT-E---E
T ss_pred             cccCCCCEEEEEecHHh-H-HHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhc--CC-eEEEEEeEccEEcCC-E---E
Confidence            56789999999999875 3 788999999999999988888888775 455444  33 54 54432     34 2   2


Q ss_pred             EEEecC-----C-CCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942         122 LEVIRT-----N-DTSDATYNAVTEWGKSIGKTTIVCKDT  155 (160)
Q Consensus       122 VEvv~~-----~-~T~~~~~~~~~~~~~~lgk~pv~v~d~  155 (160)
                      .++..|     . ..+++..+++..+++.+|..+.+..|.
T Consensus       130 ~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~  169 (291)
T 1ks9_A          130 IHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNI  169 (291)
T ss_dssp             EEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTH
T ss_pred             EEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHH
Confidence            233332     1 234567788999999999988777663

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.60  E-value=0.0046  Score=50.10  Aligned_cols=110  Identities=14%  Similarity=0.151  Sum_probs=74.8

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-HHHhcccCCCCcEEEe------ec
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-TEIASVTNRKDKFVGL------HF  112 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-~~la~~~~~p~r~ig~------Hf  112 (160)
                      ++..+++.+ ++.++|+||-|++.. .+ ++++++|...++++++|.|.+.++.. ..|.+.+.  +++++.      ..
T Consensus        74 ~~~~~~~~~-~~~~~D~vilavk~~-~~-~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~  148 (318)
T 3hwr_A           74 KVSASSDPS-AVQGADLVLFCVKST-DT-QSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEM  148 (318)
T ss_dssp             CCEEESCGG-GGTTCSEEEECCCGG-GH-HHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEE
T ss_pred             eeeeeCCHH-HcCCCCEEEEEcccc-cH-HHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEE
Confidence            466678884 579999999999997 44 68999999999999999999999998 45666664  566642      22


Q ss_pred             CCCCCCCce--EEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         113 FNPVPMMKL--LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       113 ~~P~~~~~l--VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      ..|-+....  =.+.-|.   .+..+.+.+++...|..+.+..|.-|
T Consensus       149 ~gP~~~~~~~~g~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~  192 (318)
T 3hwr_A          149 AGPGHVRHHGRGELVIEP---TSHGANLAAIFAAAGVPVETSDNVRG  192 (318)
T ss_dssp             EETTEEEEEEEEEEEECC---CTTTHHHHHHHHHTTCCEEECSCHHH
T ss_pred             cCCeEEEEcCCceEEEcC---CHHHHHHHHHHHhCCCCcEechHHHH
Confidence            234321110  0122232   23456777888888887766666543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.58  E-value=0.00045  Score=57.00  Aligned_cols=93  Identities=19%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCC-CCcEEEeecCC--
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNR-KDKFVGLHFFN--  114 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~-p~r~ig~Hf~~--  114 (160)
                      +.++ ++++.++++|+|+.++|.+.+.+.-+.+++-+.++++ +| .|+|.-++.   +|...+.. .-+..|+|+|.  
T Consensus       189 ~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-il-in~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E  265 (333)
T 2d0i_A          189 ARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YL-VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKE  265 (333)
T ss_dssp             EEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EE-EECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSS
T ss_pred             ceec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EE-EECCCCcccCHHHHHHHHHcCCceEEEecCCCCC
Confidence            4444 7766789999999999999777765555555567888 55 666665544   46666643 34568999999  


Q ss_pred             CCC---CCceE-EEecCCCCCHHHHH
Q psy3942         115 PVP---MMKLL-EVIRTNDTSDATYN  136 (160)
Q Consensus       115 P~~---~~~lV-Evv~~~~T~~~~~~  136 (160)
                      |.+   +..+. .|+.+|.++..+.+
T Consensus       266 P~~~~~L~~~~~nviltPh~~~~t~~  291 (333)
T 2d0i_A          266 PVREHELFKYEWETVLTPHYAGLALE  291 (333)
T ss_dssp             SCSCCGGGGCTTTEEECCSCTTCCHH
T ss_pred             CCCCchHHcCCCCEEEcCccCCCcHH
Confidence            643   44556 78877776654433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.48  E-value=0.0032  Score=50.59  Aligned_cols=111  Identities=11%  Similarity=0.028  Sum_probs=71.9

Q ss_pred             ceecC--ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC------CHHHHhcccCC--CCcEEEe
Q psy3942          41 IKGSS--KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL------SITEIASVTNR--KDKFVGL  110 (160)
Q Consensus        41 i~~~~--~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l------~i~~la~~~~~--p~r~ig~  110 (160)
                      +..++  ++.++++++|+||-|++..  ...+++..+.. ++++++|.+.+.++      ....+++.+..  +....+.
T Consensus        57 ~~~~~~~~~~~~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~  133 (335)
T 1txg_A           57 VEIFWPEQLEKCLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTV  133 (335)
T ss_dssp             EEEECGGGHHHHHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEE
T ss_pred             eEEecHHhHHHHHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEE
Confidence            45666  7766789999999999987  46788999988 88899888766555      23445444332  2111112


Q ss_pred             ecCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942         111 HFFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT  155 (160)
Q Consensus       111 Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~  155 (160)
                      ....|....     ....++.+. .+++..+.+..++...|..+.++.|.
T Consensus       134 ~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di  182 (335)
T 1txg_A          134 AITGPAIAREVAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDI  182 (335)
T ss_dssp             EEESSCCHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred             EEECCCcHHHHHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCch
Confidence            234554321     112333333 35788899999999999887777664

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.42  E-value=0.009  Score=51.20  Aligned_cols=112  Identities=10%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChH---------HHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccC--CC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMD---------IKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTN--RK  104 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~---------~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~--~p  104 (160)
                      +++++++|+++++++||+||-|||-..+         .-+++++.+.+.+++++++..- |++++.   +++..+.  .+
T Consensus        70 g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgtt~~l~~~l~e~~~  148 (446)
T 4a7p_A           70 GRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVPVGTGDEVERIIAEVAP  148 (446)
T ss_dssp             TCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCCTTHHHHHHHHHHHHST
T ss_pred             CCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCCchHHHHHHHHHHHhCC
Confidence            6799999997789999999999887653         4678889999999998887763 455543   3333221  11


Q ss_pred             -CcEEEeecCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHHcCCe---EEEecC
Q psy3942         105 -DKFVGLHFFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKSIGKT---TIVCKD  154 (160)
Q Consensus       105 -~r~ig~Hf~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~lgk~---pv~v~d  154 (160)
                       ..+-.  .++|....+--         -|+-| .+++++.+.+..++..+++.   |+.+.|
T Consensus       149 ~~d~~v--~~~Pe~a~eG~a~~d~~~p~~ivvG-~~~~~~~~~~~~ly~~~~~~~~~~~~~~d  208 (446)
T 4a7p_A          149 NSGAKV--VSNPEFLREGAAIEDFKRPDRVVVG-TEDEFARQVMREIYRPLSLNQSAPVLFTG  208 (446)
T ss_dssp             TSCCEE--EECCCCCCTTSHHHHHHSCSCEEEE-CSCHHHHHHHHHHHCSCC-----CEEEEC
T ss_pred             CCCceE--EeCcccccccchhhhccCCCEEEEe-CCcHHHHHHHHHHHHHHhcCCCeEEEeCC
Confidence             11111  25665554432         24443 34688999999999988885   566655

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.38  E-value=0.0033  Score=54.01  Aligned_cols=104  Identities=10%  Similarity=0.068  Sum_probs=70.4

Q ss_pred             CceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC--HHHHhcccCC-CCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS--ITEIASVTNR-KDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~--i~~la~~~~~-p~r~ig~Hf~  113 (160)
                      .+..++++++.+++   +|+|+.|+|....++ +++.+|...++++++|.+.+++.+  ..++...+.. .-+++++...
T Consensus        52 gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           52 NLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             CEEECSSHHHHHHTBCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             CeEEeCCHHHHHhhccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCC
Confidence            47778888766665   999999999987776 466888888988888876665553  3567666543 2244444322


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      .++.   ..+.  ++.+.  +++.++.+..+++.+|+.
T Consensus       131 gg~~~a~~g~~--i~~gg--~~~~~~~v~~ll~~~g~~  164 (474)
T 2iz1_A          131 GGEKGALLGPS--MMPGG--QKEAYDLVAPIFEQIAAK  164 (474)
T ss_dssp             SHHHHHHHCCC--EEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred             CChhhhccCCe--EEecC--CHHHHHHHHHHHHHHhcc
Confidence            2111   1111  34333  789999999999999987

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.00089  Score=58.13  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             CceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC--HHHHhcccCC-CCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS--ITEIASVTNR-KDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~--i~~la~~~~~-p~r~ig~Hf~  113 (160)
                      .+..++++++++++   +|+||-+||....++ +++.+|...++++++|.+.+.+.+  ..++++.+.. .-+++++..+
T Consensus        58 gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVs  136 (497)
T 2p4q_A           58 SIIGATSIEDFISKLKRPRKVMLLVKAGAPVD-ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVS  136 (497)
T ss_dssp             SEECCSSHHHHHHTSCSSCEEEECCCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH-HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcc
Confidence            57778888766666   999999999987777 455889899988888876555554  3456655432 2245544333


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      +.+.   ..+  =++.|.  +++.++.+..+++.+|+.
T Consensus       137 gg~~~a~~G~--~im~gg--~~e~~~~v~~ll~~~g~~  170 (497)
T 2p4q_A          137 GGEEGARYGP--SLMPGG--SEEAWPHIKNIFQSISAK  170 (497)
T ss_dssp             SHHHHHHHCC--EEEEEE--CGGGHHHHHHHHHHHSCE
T ss_pred             cChhHhhcCC--eEEecC--CHHHHHHHHHHHHHhcCc
Confidence            3211   011  145443  688999999999999997

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.32  E-value=0.00095  Score=55.30  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=49.3

Q ss_pred             cCceecCChhhhcCCCcEEEEe--------------ccCChHHHHHHHHHHhhhCCCCc--EEeecCCCCCHHHHhcccC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEA--------------IVENMDIKHKLFTSVDKIAPASA--ILASNTSSLSITEIASVTN  102 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEa--------------v~E~l~~K~~v~~~l~~~~~~~~--iiasnTS~l~i~~la~~~~  102 (160)
                      .++..++|++ +++|||+||.+              +.+|.++++++.+++.+.+ |++  ++.||-..+-..-+....+
T Consensus        76 ~~i~~t~d~~-~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~sg  153 (330)
T 3ldh_A           76 AKIVSGKDYS-VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKLSG  153 (330)
T ss_dssp             SEEEEESSSC-SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHC
T ss_pred             CeEEEcCCHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHHhC
Confidence            4677889995 69999999954              7888999999999999996 555  3446654432222222334


Q ss_pred             C-CCcEEEe
Q psy3942         103 R-KDKFVGL  110 (160)
Q Consensus       103 ~-p~r~ig~  110 (160)
                      . |.|++|+
T Consensus       154 ~p~~rViG~  162 (330)
T 3ldh_A          154 LPMHRIIGS  162 (330)
T ss_dssp             CCGGGEECC
T ss_pred             CCHHHeecc
Confidence            3 4677876

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.21  E-value=0.0032  Score=51.61  Aligned_cols=71  Identities=21%  Similarity=0.310  Sum_probs=47.4

Q ss_pred             hcCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhccc
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVT  101 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~  101 (160)
                      ..+|+.++++ +++++||+||+++              ..|..+.+++...+.+.++ ++++  .||....-..-+....
T Consensus        64 ~~~i~~t~d~-~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvvsNPvd~~t~~~~k~s  141 (315)
T 3tl2_A           64 DANIIGTSDY-ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA  141 (315)
T ss_dssp             CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCH-HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEECCChHHHHHHHHHHhc
Confidence            4578888888 5899999999997              2355678899999999984 5544  3554333222222223


Q ss_pred             CC-CCcEEEe
Q psy3942         102 NR-KDKFVGL  110 (160)
Q Consensus       102 ~~-p~r~ig~  110 (160)
                      +. |.|++|+
T Consensus       142 g~p~~rviG~  151 (315)
T 3tl2_A          142 GFPKERVIGQ  151 (315)
T ss_dssp             CCCGGGEEEC
T ss_pred             CCChHHEEee
Confidence            33 4688887

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.19  E-value=0.0036  Score=54.21  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=73.5

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccCCh----------HHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhc-----
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVENM----------DIKHKLFTSVDKIAPASAILASNTSSLSIT---EIAS-----   99 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E~l----------~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~-----   99 (160)
                      .++++++++. +++++||+||.|||...          +.-....+.+.+.+++++++. +.|++++.   +++.     
T Consensus        87 ~g~l~~ttd~-ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~  164 (478)
T 3g79_A           87 AGKFECTPDF-SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEE  164 (478)
T ss_dssp             TTCEEEESCG-GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHH
T ss_pred             cCCeEEeCcH-HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHH
Confidence            4789999996 68999999999999874          334566788888888888764 55666654   3332     


Q ss_pred             ccCC--CCcEEEeecCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHHc-CCeEEEecC
Q psy3942         100 VTNR--KDKFVGLHFFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKSI-GKTTIVCKD  154 (160)
Q Consensus       100 ~~~~--p~r~ig~Hf~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~l-gk~pv~v~d  154 (160)
                      ..+.  ...+--  .++|....+--         =||.|  .+++..+++..+++.+ ++.++.+.+
T Consensus       165 ~~g~~~~~d~~v--~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~  227 (478)
T 3g79_A          165 ESGLKAGEDFAL--AHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMS  227 (478)
T ss_dssp             HHCCCBTTTBEE--EECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEE
T ss_pred             hcCCCcCCceeE--EeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCC
Confidence            1111  112211  25675544311         24533  3677789999999999 888887754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.04  E-value=0.0093  Score=48.85  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=71.1

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHH----HhhhCCC-CcEEeecCCCCCHHH---HhcccC--CCCcEEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS----VDKIAPA-SAILASNTSSLSITE---IASVTN--RKDKFVG  109 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~----l~~~~~~-~~iiasnTS~l~i~~---la~~~~--~p~r~ig  109 (160)
                      ++..++++++++.++|+||.|++.  ....+++.+    |...+++ +++|.+.+.++++..   ++..+.  .|.....
T Consensus        72 ~~~~~~~~~~~~~~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~  149 (366)
T 1evy_A           72 NITFTSDVEKAYNGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLS  149 (366)
T ss_dssp             TEEEESCHHHHHTTCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEE
T ss_pred             ceeeeCCHHHHHcCCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEE
Confidence            467778887678999999999996  567788988    8888888 888888777766531   111111  1211111


Q ss_pred             eecCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHc--CCeEEEecCcC
Q psy3942         110 LHFFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSI--GKTTIVCKDTP  156 (160)
Q Consensus       110 ~Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~l--gk~pv~v~d~p  156 (160)
                       ....|....     ...-++.+ ..+++..+.+..++..+  |..+....|..
T Consensus       150 -v~~gp~~~~~~~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~  201 (366)
T 1evy_A          150 -VLAGPSFAIEVATGVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDTV  201 (366)
T ss_dssp             -EEESSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHH
T ss_pred             -EEeCCChHHHHHhCCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCch
Confidence             123343311     11122222 34678889999999999  87766666643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.99  E-value=0.0041  Score=51.09  Aligned_cols=70  Identities=16%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             CceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCcE--EeecCCCCCHHHHhcccCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASAI--LASNTSSLSITEIASVTNR  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~i--iasnTS~l~i~~la~~~~~  103 (160)
                      +++.++++ +++++||+||-++              ..|..+-+++..++.+.+ |+++  +.||...+-..-+....+.
T Consensus        61 ~v~~t~d~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~  138 (321)
T 3p7m_A           61 KVRGTNDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGV  138 (321)
T ss_dssp             CEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCC
T ss_pred             EEEEcCCH-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCC
Confidence            56666788 5899999999995              235678899999999998 6665  3466555433333334455


Q ss_pred             C-CcEEEee
Q psy3942         104 K-DKFVGLH  111 (160)
Q Consensus       104 p-~r~ig~H  111 (160)
                      | .|++|+.
T Consensus       139 p~~rviG~~  147 (321)
T 3p7m_A          139 PDNKIVGMA  147 (321)
T ss_dssp             CGGGEEEEC
T ss_pred             CHHHEEeec
Confidence            4 7888875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.94  E-value=0.019  Score=46.52  Aligned_cols=87  Identities=20%  Similarity=0.265  Sum_probs=57.6

Q ss_pred             cCceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcE--EeecCCCCCHHHH---hc
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAI--LASNTSSLSITEI---AS   99 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~i--iasnTS~l~i~~l---a~   99 (160)
                      .+++.++|++ ++++||+||.|++-              |..+.+++.+.+.+.+ |+++  +.||    |+.-+   ..
T Consensus        56 ~~i~~t~d~~-~l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN----P~~~~~~~~~  129 (310)
T 1guz_A           56 TKVTGSNDYA-DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN----PLDIMTHVAW  129 (310)
T ss_dssp             CEEEEESCGG-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS----SHHHHHHHHH
T ss_pred             cEEEECCCHH-HHCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC----chHHHHHHHH
Confidence            4577888995 59999999999952              1366789999999997 5553  4455    44433   32


Q ss_pred             c-cC-CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         100 V-TN-RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       100 ~-~~-~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      . .. .|+|++|+                  .|.-++......+++.+|..|
T Consensus       130 ~~~~~~~~rviG~------------------gt~ld~~r~~~~la~~l~v~~  163 (310)
T 1guz_A          130 VRSGLPKERVIGM------------------AGVLDAARFRSFIAMELGVSM  163 (310)
T ss_dssp             HHHCSCGGGEEEE------------------CHHHHHHHHHHHHHHHHTCCG
T ss_pred             HhcCCChHHEEEC------------------CCchHHHHHHHHHHHHhCCCH
Confidence            2 22 36799998                  455455555555667777644

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.73  E-value=0.0047  Score=53.28  Aligned_cols=104  Identities=9%  Similarity=0.063  Sum_probs=70.9

Q ss_pred             CceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhcccC-CCCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVTN-RKDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~~-~p~r~ig~Hf~  113 (160)
                      .+..++++++++++   +|+||-|+|....++ +++.+|...++++++|.+.+.+.+.  .++++.+. ..-+++++--.
T Consensus        62 gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           62 KLVPYYTVKEFVESLETPRRILLMVKAGAGTD-AAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             CEEECSSHHHHHHTBCSSCEEEECSCSSSHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CeEEeCCHHHHHhCCCCCCEEEEECCCHHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccc
Confidence            57778888766766   999999999976666 5668898889888888866666643  45655443 23345544222


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      ..+.   ..+ . ++.|.  +++.++.+..+++.+|+.
T Consensus       141 gg~~~a~~g~-~-i~~gg--~~~~~~~v~~ll~~~g~~  174 (480)
T 2zyd_A          141 GGEEGALKGP-S-IMPGG--QKEAYELVAPILTKIAAV  174 (480)
T ss_dssp             SHHHHHHHCC-E-EEEES--CHHHHHHHHHHHHHHSCB
T ss_pred             cCHhHHhcCC-e-EEecC--CHHHHHHHHHHHHHHhcc
Confidence            1111   122 2 55543  589999999999999987

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=95.68  E-value=0.0071  Score=52.01  Aligned_cols=70  Identities=21%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             cCceecCChhhhcCCCcEEEEecc------------------------C------------ChHHHHHHHHHHhhhCCCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV------------------------E------------NMDIKHKLFTSVDKIAPAS   82 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~------------------------E------------~l~~K~~v~~~l~~~~~~~   82 (160)
                      .+|+.|+|+++|++|||+||++++                        |            +..+=+++..++.+.|| +
T Consensus        61 ~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p-~  139 (450)
T 3fef_A           61 WRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAP-E  139 (450)
T ss_dssp             EEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred             CeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCC-C
Confidence            578899999889999999999995                        1            12235667788888884 5


Q ss_pred             cEEe--ecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          83 AILA--SNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        83 ~iia--snTS~l~i~~la~~~~~p~r~ig~  110 (160)
                      +++.  ||-..+ ++.......-+.|++|+
T Consensus       140 a~~i~~tNPvdi-~t~~~~k~~p~~rviG~  168 (450)
T 3fef_A          140 SWVINYTNPMSV-CTRVLYKVFPGIKAIGC  168 (450)
T ss_dssp             SEEEECCSSHHH-HHHHHHHHCTTCEEEEC
T ss_pred             eEEEEecCchHH-HHHHHHHHCCCCCEEEe
Confidence            5443  665543 33333222123577776

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.52  E-value=0.045  Score=44.40  Aligned_cols=114  Identities=9%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC-------------------HH-HHhc
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS-------------------IT-EIAS   99 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~-------------------i~-~la~   99 (160)
                      ++..+++++ ++.++|+||-|++- ..++ +++++|...++++++|.|.+.+++                   .. .|..
T Consensus        58 ~~~~~~~~~-~~~~~D~Vilavk~-~~~~-~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~  134 (335)
T 3ghy_A           58 PVRATHDAA-ALGEQDVVIVAVKA-PALE-SVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQ  134 (335)
T ss_dssp             CCEEESCHH-HHCCCSEEEECCCH-HHHH-HHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHH
T ss_pred             eeeEECCHH-HcCCCCEEEEeCCc-hhHH-HHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHH
Confidence            456677885 57999999999998 3555 888999999999999998777753                   12 3444


Q ss_pred             ccCCCCcEEEe------ecCCCCCCCc--eEEEecCC--CCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         100 VTNRKDKFVGL------HFFNPVPMMK--LLEVIRTN--DTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       100 ~~~~p~r~ig~------Hf~~P~~~~~--lVEvv~~~--~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      .+. +.++++.      ....|-+...  .-.++-|.  ...++..+.+.+++...|.......|.-+
T Consensus       135 ~~~-~~~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  201 (335)
T 3ghy_A          135 AIP-TRHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR  201 (335)
T ss_dssp             HSC-GGGEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred             hcC-cccEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence            442 3465532      2222322100  00133332  33456778888999999987776666543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.52  E-value=0.0079  Score=49.46  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             cCceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcE--EeecCCCCCHHHHhcccC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAI--LASNTSSLSITEIASVTN  102 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~i--iasnTS~l~i~~la~~~~  102 (160)
                      .+|..++|+ +++++||+||-++.              .|..+-+++..++.+.+ |+++  +.||-..+-..-+.....
T Consensus        62 ~~v~~t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg  139 (324)
T 3gvi_A           62 AKFTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSG  139 (324)
T ss_dssp             CCEEEESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHC
T ss_pred             CEEEEeCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcC
Confidence            457777888 68999999999863              25577889999999998 6665  457765544333333444


Q ss_pred             CC-CcEEEee
Q psy3942         103 RK-DKFVGLH  111 (160)
Q Consensus       103 ~p-~r~ig~H  111 (160)
                      .| .|++|+.
T Consensus       140 ~p~~rviG~~  149 (324)
T 3gvi_A          140 LPAHKVVGMA  149 (324)
T ss_dssp             CCGGGEEECC
T ss_pred             CCHHHEEeec
Confidence            44 6888875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.48  E-value=0.021  Score=44.39  Aligned_cols=104  Identities=23%  Similarity=0.217  Sum_probs=64.3

Q ss_pred             cCChhhhcCCCcEEEEeccCChHHHHHHHHHH-hhhCCCCcEEeecCCCC----------------CH-HHHhcccCCCC
Q psy3942          44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSV-DKIAPASAILASNTSSL----------------SI-TEIASVTNRKD  105 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l-~~~~~~~~iiasnTS~l----------------~i-~~la~~~~~p~  105 (160)
                      .++..++++++|+||-|+|.....  +++.++ .... ++++|.+.+.++                .+ ..+.+.+. ..
T Consensus        81 ~~~~~e~~~~aDvVilavp~~~~~--~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~  156 (245)
T 3dtt_A           81 LAAFADVAAGAELVVNATEGASSI--AALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EA  156 (245)
T ss_dssp             EEEHHHHHHHCSEEEECSCGGGHH--HHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TS
T ss_pred             ccCHHHHHhcCCEEEEccCcHHHH--HHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CC
Confidence            445556789999999999987544  455566 4444 677776655322                33 34555553 24


Q ss_pred             cEE-EeecCC------CCC--CCceEEEecCCCCCHHHHHHHHHHHHHcCCeE-EEec
Q psy3942         106 KFV-GLHFFN------PVP--MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT-IVCK  153 (160)
Q Consensus       106 r~i-g~Hf~~------P~~--~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p-v~v~  153 (160)
                      +++ |++|..      |..  ..++.=++.|.  +++..+.+..++..+|+.+ +.+.
T Consensus       157 ~vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G  212 (245)
T 3dtt_A          157 KVVKTLNTMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLG  212 (245)
T ss_dssp             EEEECSTTSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             eEEEeecccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccC
Confidence            655 455432      111  12333334443  7899999999999999876 4454

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.32  E-value=0.00054  Score=59.44  Aligned_cols=24  Identities=17%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             cCceecCChhhhcCCCcEEEEecc
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV   62 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~   62 (160)
                      .+|+.++|++++++|||+||++++
T Consensus        63 ~~I~~ttD~~eal~dAD~VIiaag   86 (480)
T 1obb_A           63 LKFEKTMNLDDVIIDADFVINTAM   86 (480)
T ss_dssp             CEEEEESCHHHHHTTCSEEEECCC
T ss_pred             cEEEEECCHHHHhCCCCEEEECCC
Confidence            578889999778999999999993

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=95.31  E-value=0.11  Score=42.62  Aligned_cols=111  Identities=20%  Similarity=0.204  Sum_probs=79.0

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhc---ccCCCC-cEEEeecCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIAS---VTNRKD-KFVGLHFFN  114 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~---~~~~p~-r~ig~Hf~~  114 (160)
                      ..+.+++|=.+|++++|++|==.|- -..--+|.+++-..+++++||+ ||-++|...|..   .++|.+ .+..+|+-.
T Consensus       127 aGVkVtsDD~EAvk~AEi~IlftPf-G~~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaa  204 (358)
T 2b0j_A          127 VGLKVTSDDREAVEGADIVITWLPK-GNKQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGC  204 (358)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCTT-CTTHHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred             cCcEeecchHHHhcCCCEEEEecCC-CCCcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            3566655544799999999988887 3345689999999999999987 455666665554   455554 455556554


Q ss_pred             CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       115 P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      =|-+ .-=........+++.+++...|+++.||.+.++
T Consensus       205 VPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~v  241 (358)
T 2b0j_A          205 VPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (358)
T ss_dssp             CTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCC-CCccccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence            3332 222334556677888999999999999999987

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.27  E-value=0.017  Score=49.61  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             CceecCChhhhc---CCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhcccCC-CCcEEEeecC
Q psy3942          40 RIKGSSKVEDSV---SQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVTNR-KDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al---~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~~~-p~r~ig~Hf~  113 (160)
                      .+..++++++.+   +++|+||.|+|....++. ++.+|...++++++|.+.+.+.+.  .++...+.. .-+++++..+
T Consensus        50 gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  128 (482)
T 2pgd_A           50 KVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS  128 (482)
T ss_dssp             SCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCC
Confidence            467788886654   499999999999877774 667888888888888766655553  355554432 2345555433


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      .++.   ..+.  ++.|.  +++.++.+..+++.+|+.+
T Consensus       129 g~~~~a~~g~~--i~~gg--~~e~~~~v~~ll~~~g~~v  163 (482)
T 2pgd_A          129 GGEDGARYGPS--LMPGG--NKEAWPHIKAIFQGIAAKV  163 (482)
T ss_dssp             SHHHHHHHCCE--EEEEE--CTTTHHHHHHHHHHHSCBC
T ss_pred             CChhhhccCCe--EEeCC--CHHHHHHHHHHHHHhhhhc
Confidence            2211   1112  23333  4778899999999999876

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.19  E-value=0.031  Score=44.78  Aligned_cols=69  Identities=20%  Similarity=0.332  Sum_probs=46.5

Q ss_pred             CceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH-HHhcc-cCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAILASNTSSLSIT-EIASV-TNR  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~-~la~~-~~~  103 (160)
                      ++..++++ ++++++|+||.|+.              +|..++++++.++.+. .++++|.+-+-.+.+. .++.. ...
T Consensus        63 ~v~~~~~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~  140 (319)
T 1lld_A           63 SIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGL  140 (319)
T ss_dssp             EEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTC
T ss_pred             EEEeCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCC
Confidence            45555677 57999999999992              4568889999999997 5777776544343333 33321 123


Q ss_pred             -CCcEEEe
Q psy3942         104 -KDKFVGL  110 (160)
Q Consensus       104 -p~r~ig~  110 (160)
                       +.|++|+
T Consensus       141 ~~~~vig~  148 (319)
T 1lld_A          141 PENQIFGS  148 (319)
T ss_dssp             CTTSEEEC
T ss_pred             CHHHEeec
Confidence             4688876

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.15  E-value=0.0084  Score=49.73  Aligned_cols=52  Identities=13%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             cCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCc--EEeecCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASA--ILASNTS   90 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--iiasnTS   90 (160)
                      .++++++++.++++|||+||-++              ..|..+.+++...+.+.+++..  ++.||-.
T Consensus        62 ~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPv  129 (343)
T 3fi9_A           62 LNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPA  129 (343)
T ss_dssp             CCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSH
T ss_pred             CceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCch
Confidence            46788888877899999999874              3566788999999999996664  4567643

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=94.82  E-value=0.036  Score=48.47  Aligned_cols=101  Identities=15%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhc-ccCCC--CcEEEeecCCCCCC---
Q psy3942          45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIAS-VTNRK--DKFVGLHFFNPVPM---  118 (160)
Q Consensus        45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~-~~~~p--~r~ig~Hf~~P~~~---  118 (160)
                      .++++++++||+|+=++|-...  .+++.++...++++++| |-.+++++..+.+ ....|  -+++-+|+-.|.+.   
T Consensus       113 ~s~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~  189 (525)
T 3fr7_A          113 GDIWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRR  189 (525)
T ss_dssp             EEHHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHH
T ss_pred             CCHHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHH
Confidence            5677789999999999998654  36899999999999995 8899999988875 22222  37999999888874   


Q ss_pred             ------------Cc-eEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942         119 ------------MK-LLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus       119 ------------~~-lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                                  ++ ++-+  +...+.+..+.+.+++..+|...+
T Consensus       190 ~y~~G~~~~g~Gv~~liAv--~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          190 LYVQGKEINGAGINSSFAV--HQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHHHTTSTTCSCCEEEEE--EECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             HHhcccccccCCccEEEEc--CCCCCHHHHHHHHHHHHHCCCCee
Confidence                        55 4433  335566778999999999999754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.79  E-value=0.016  Score=49.47  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=68.8

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccCChHH----------HHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhccc--C
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDI----------KHKLFTSVDKIAPASAILASNTSSLSIT---EIASVT--N  102 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E~l~~----------K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~--~  102 (160)
                      -+++++++|+    ++||+||=|||-....          =....+.+-+.+++++++. +.|++++.   +++..+  .
T Consensus        72 ~g~l~~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~  146 (431)
T 3ojo_A           72 SGKLKVSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIEN  146 (431)
T ss_dssp             TTCEEEESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHT
T ss_pred             cCceEEeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHH
Confidence            3678998885    4899999999976632          2455677888888888665 44555543   333221  1


Q ss_pred             CC----CcEEEeecCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         103 RK----DKFVGLHFFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       103 ~p----~r~ig~Hf~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                      +.    .++--  .++|....+--         =||.|.  ++++.+++..+++.+++.++.+.
T Consensus       147 ~g~~~~~d~~v--~~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~  206 (431)
T 3ojo_A          147 LGFTIGEDIYL--VHCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIET  206 (431)
T ss_dssp             TTCCBTTTEEE--EECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             cCCCcCCCeEE--EECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeC
Confidence            11    12222  35675543321         355553  68999999999999999877764

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=94.78  E-value=0.011  Score=50.33  Aligned_cols=69  Identities=28%  Similarity=0.339  Sum_probs=46.9

Q ss_pred             cCceecCChhhhcCCCcEEEEecc----------CCh------------------------HHHHHHHHHHhhhCCCCcE
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV----------ENM------------------------DIKHKLFTSVDKIAPASAI   84 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~----------E~l------------------------~~K~~v~~~l~~~~~~~~i   84 (160)
                      .+|+.++|+.++++|||+||.++.          |.+                        .+=+++.+++.+.|  +++
T Consensus        59 ~~v~~t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~  136 (417)
T 1up7_A           59 FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NAT  136 (417)
T ss_dssp             SEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCE
T ss_pred             eEEEEeCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEE
Confidence            467778898678999999999992          111                        23458889999999  665


Q ss_pred             Ee--ecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          85 LA--SNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        85 ia--snTS~l~i~~la~~~~~p~r~ig~  110 (160)
                      +.  ||-..+ +++.......+.|++|+
T Consensus       137 lin~TNPvdi-~t~a~~k~~p~~rviG~  163 (417)
T 1up7_A          137 IVNFTNPSGH-ITEFVRNYLEYEKFIGL  163 (417)
T ss_dssp             EEECSSSHHH-HHHHHHHTTCCSSEEEC
T ss_pred             EEEeCChHHH-HHHHHHHhCCCCCEEEe
Confidence            44  666554 34444333323399997

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.49  E-value=0.041  Score=47.24  Aligned_cols=103  Identities=8%  Similarity=0.060  Sum_probs=68.4

Q ss_pred             ceecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC--HHHHhcccCC-CCcEEEeecCC
Q psy3942          41 IKGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS--ITEIASVTNR-KDKFVGLHFFN  114 (160)
Q Consensus        41 i~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~--i~~la~~~~~-p~r~ig~Hf~~  114 (160)
                      +..++++++.++   ++|+|+.|+|....++. ++.+|...++++++|.+.+.+.+  ..++...+.. .-+++++....
T Consensus        53 i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~g  131 (478)
T 1pgj_A           53 LKAFETMEAFAASLKKPRKALILVQAGAATDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (478)
T ss_dssp             EEECSCHHHHHHHBCSSCEEEECCCCSHHHHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             eEEECCHHHHHhcccCCCEEEEecCChHHHHH-HHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccC
Confidence            677788866555   59999999999877664 56888888888888876555553  3456655432 23455543322


Q ss_pred             CCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         115 PVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       115 P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      ++.   ..+  =++.|.  +++..+.+..+++.+|..
T Consensus       132 g~~~a~~g~--~i~~gg--~~~~~~~v~~ll~~~g~~  164 (478)
T 1pgj_A          132 GEEGARKGP--AFFPGG--TLSVWEEIRPIVEAAAAK  164 (478)
T ss_dssp             HHHHHHHCC--EEEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred             CHHHHhcCC--eEeccC--CHHHHHHHHHHHHHhccc
Confidence            211   112  134332  688999999999999987

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=94.25  E-value=0.041  Score=47.46  Aligned_cols=70  Identities=14%  Similarity=0.272  Sum_probs=46.7

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCC----------------------------------hHHHHHHHHHHhhhCCCCcE
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVEN----------------------------------MDIKHKLFTSVDKIAPASAI   84 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~----------------------------------l~~K~~v~~~l~~~~~~~~i   84 (160)
                      .+|+.++|++++++|||+||-+++=.                                  ..+=+++.+++.+.| |+++
T Consensus        88 ~~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~  166 (472)
T 1u8x_X           88 IEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAW  166 (472)
T ss_dssp             SEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCE
T ss_pred             CEEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeE
Confidence            46888899877899999999999641                                  123468889999998 5565


Q ss_pred             Ee--ecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          85 LA--SNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        85 ia--snTS~l~i~~la~~~~~p~r~ig~  110 (160)
                      |.  ||-..+ +++.......+.|++|+
T Consensus       167 ii~~TNPvdi-~T~~~~k~~p~~rViG~  193 (472)
T 1u8x_X          167 MLNYSNPAAI-VAEATRRLRPNSKILNI  193 (472)
T ss_dssp             EEECCSCHHH-HHHHHHHHSTTCCEEEC
T ss_pred             EEEeCCcHHH-HHHHHHHhCCCCCEEEe
Confidence            55  443332 22333332334499997

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.79  E-value=0.014  Score=50.54  Aligned_cols=105  Identities=10%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             CceecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhcccC-CCCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVTN-RKDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~~-~p~r~ig~Hf~  113 (160)
                      ++..++++++.++   ++|+|+-++|....++. ++.+|...++++.+|...+++.+.  .+++..+. +--+++++-..
T Consensus        52 ~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVs  130 (484)
T 4gwg_A           52 KVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVS  130 (484)
T ss_dssp             SCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ceeccCCHHHHHhhccCCCEEEEecCChHHHHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCcc
Confidence            4566778765554   69999999999877664 678898999888888766666543  34444332 12234443211


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ..+.   ..+  =++.|.  ++++++++..+++.+|..+
T Consensus       131 Gg~~gA~~G~--~im~GG--~~ea~~~v~pll~~ig~~v  165 (484)
T 4gwg_A          131 GGEEGARYGP--SLMPGG--NKEAWPHIKTIFQGIAAKV  165 (484)
T ss_dssp             SHHHHHHHCC--EEEEEE--CGGGHHHHHHHHHHHSCBC
T ss_pred             CCHHHHhcCC--eeecCC--CHHHHHHHHHHHHHhcCcc
Confidence            1000   111  133332  6889999999999999865

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.48  E-value=0.29  Score=38.52  Aligned_cols=109  Identities=8%  Similarity=0.069  Sum_probs=69.4

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-HHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-TEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      +..+++. +++.++|+||=|++-.- + .+++.++.....++++|.+-+.++.. ..|+..+....-+.|+.++ ++...
T Consensus        72 ~~~~~~~-~~~~~~D~vil~vk~~~-~-~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~-~a~~~  147 (317)
T 2qyt_A           72 TCVTDNP-AEVGTVDYILFCTKDYD-M-ERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYI-SARKS  147 (317)
T ss_dssp             SEEESCH-HHHCCEEEEEECCSSSC-H-HHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEE-EEEEE
T ss_pred             ceEecCc-cccCCCCEEEEecCccc-H-HHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEE-EEEEc
Confidence            3344566 46789999999998765 3 67888998888888888877777877 4566666443222343332 22211


Q ss_pred             ---ce-------EEEecC--CCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         120 ---KL-------LEVIRT--NDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       120 ---~l-------VEvv~~--~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                         ..       .=++..  ...+++.. .+..++...|.......|
T Consensus       148 ~pg~~~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d  193 (317)
T 2qyt_A          148 APGLITLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD  193 (317)
T ss_dssp             ETTEEEEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred             CCCEEEEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence               00       111221  33456777 889999999987666555

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.31  E-value=0.32  Score=40.61  Aligned_cols=110  Identities=19%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCCh---------HHHHHHHHHHhhhCCCCcEEee-cCCCCCH-HHHhcccCCCCcE
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENM---------DIKHKLFTSVDKIAPASAILAS-NTSSLSI-TEIASVTNRKDKF  107 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l---------~~K~~v~~~l~~~~~~~~iias-nTS~l~i-~~la~~~~~p~r~  107 (160)
                      .++++++++.++++++|+||-|+|-..         ..-.++++.+.. +.++++|.. +|..... .+++..+... .+
T Consensus        59 ~~l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~v  136 (402)
T 1dlj_A           59 LSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-RI  136 (402)
T ss_dssp             CCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-CE
T ss_pred             CcEEEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-eE
Confidence            367888888667899999999999874         256777888888 778887764 4544444 3566555322 22


Q ss_pred             EEeecCCCCCCCce------EE---EecCCCCC-----HHHHHHHHHHHHHcC-C-e-EEEecC
Q psy3942         108 VGLHFFNPVPMMKL------LE---VIRTNDTS-----DATYNAVTEWGKSIG-K-T-TIVCKD  154 (160)
Q Consensus       108 ig~Hf~~P~~~~~l------VE---vv~~~~T~-----~~~~~~~~~~~~~lg-k-~-pv~v~d  154 (160)
                      +    ++|....+-      ..   |+-|....     .+..+.+..++...+ + . ++++.|
T Consensus       137 ~----~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d  196 (402)
T 1dlj_A          137 I----FSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMG  196 (402)
T ss_dssp             E----ECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEEC
T ss_pred             E----ECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecC
Confidence            2    334433221      11   55554442     155566777776533 2 2 565544

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=93.28  E-value=0.1  Score=44.72  Aligned_cols=70  Identities=17%  Similarity=0.301  Sum_probs=46.4

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCC----------------------------------hHHHHHHHHHHhhhCCCCcE
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVEN----------------------------------MDIKHKLFTSVDKIAPASAI   84 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~----------------------------------l~~K~~v~~~l~~~~~~~~i   84 (160)
                      .+|+.++|+.++++|||+||-+++=.                                  ..+=+++..++.+.| |+++
T Consensus        69 ~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~  147 (450)
T 1s6y_A           69 IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAW  147 (450)
T ss_dssp             CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCE
T ss_pred             cEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeE
Confidence            35777889867899999999999821                                  134568889999998 5565


Q ss_pred             Ee--ecCCCCCHHHHhcccCCCCcEEEe
Q psy3942          85 LA--SNTSSLSITEIASVTNRKDKFVGL  110 (160)
Q Consensus        85 ia--snTS~l~i~~la~~~~~p~r~ig~  110 (160)
                      |.  ||-..+ +++.......+.|++|+
T Consensus       148 ii~~tNPvdi-vT~a~~k~~p~~rViG~  174 (450)
T 1s6y_A          148 LINFTNPAGM-VTEAVLRYTKQEKVVGL  174 (450)
T ss_dssp             EEECSSSHHH-HHHHHHHHCCCCCEEEC
T ss_pred             EEEeCCcHHH-HHHHHHHhCCCCCEEEe
Confidence            54  443332 23333333323399997

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.71  E-value=1  Score=35.85  Aligned_cols=112  Identities=11%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC-HHHHhcccCCCCcEEEee------c
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS-ITEIASVTNRKDKFVGLH------F  112 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~-i~~la~~~~~p~r~ig~H------f  112 (160)
                      .+..+++.+ ++.++|+||=|++-.--  .+++++|...++++++|.|..-++. ...|.+.+.. .++++.-      .
T Consensus        57 ~~~~~~~~~-~~~~~D~vilavk~~~~--~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~  132 (312)
T 3hn2_A           57 HVKGYRAPE-EIGPMDLVLVGLKTFAN--SRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNR  132 (312)
T ss_dssp             CCCEESCHH-HHCCCSEEEECCCGGGG--GGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCB
T ss_pred             eceeecCHH-HcCCCCEEEEecCCCCc--HHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEE
Confidence            345567774 57899999999976542  2789999999999999999999997 4556665542 3554431      1


Q ss_pred             CCCCCCC----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942         113 FNPVPMM----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT  155 (160)
Q Consensus       113 ~~P~~~~----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~  155 (160)
                      ..|-+..    .-+-+-..+..+.+..+.+.+++...|.......|.
T Consensus       133 ~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di  179 (312)
T 3hn2_A          133 GEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDL  179 (312)
T ss_dssp             CSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSCH
T ss_pred             cCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEEChHH
Confidence            2221110    012222223345667788889999989877666664

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.62  E-value=0.41  Score=38.36  Aligned_cols=114  Identities=8%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-HHHhcccCCCCcEEEe-ecC----
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-TEIASVTNRKDKFVGL-HFF----  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-~~la~~~~~p~r~ig~-Hf~----  113 (160)
                      .+..+++.+++..++|+||=|++-.--  .+++++|...++++++|.|..-++.. ..|.+.+.. .++++. =|+    
T Consensus        58 ~~~~~~~~~~~~~~~DlVilavK~~~~--~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~-~~vl~g~~~~~a~~  134 (320)
T 3i83_A           58 PAAVVRSAAELETKPDCTLLCIKVVEG--ADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPD-NEVISGLAFIGVTR  134 (320)
T ss_dssp             CSCEESCGGGCSSCCSEEEECCCCCTT--CCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTT-SCEEEEEEEEEEEE
T ss_pred             eeeeECCHHHcCCCCCEEEEecCCCCh--HHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCC-CcEEEEEEEeceEE
Confidence            345567775444599999999987653  26889999999999999888888864 566666643 355442 222    


Q ss_pred             -CCCCCC--ceEEEecC--CCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942         114 -NPVPMM--KLLEVIRT--NDTSDATYNAVTEWGKSIGKTTIVCKDTP  156 (160)
Q Consensus       114 -~P~~~~--~lVEvv~~--~~T~~~~~~~~~~~~~~lgk~pv~v~d~p  156 (160)
                       .|-...  ..-.+.-|  ...+.+..+.+.+++...|..+....|.-
T Consensus       135 ~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~  182 (320)
T 3i83_A          135 TAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENIT  182 (320)
T ss_dssp             EETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHH
T ss_pred             cCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHH
Confidence             221110  11123322  33445677888899999898776666643

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=91.82  E-value=0.099  Score=42.00  Aligned_cols=110  Identities=12%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHH-HHhcccCCCCcEEEeecCC-CCC
Q psy3942          41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTSSLSIT-EIASVTNRKDKFVGLHFFN-PVP  117 (160)
Q Consensus        41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~-~la~~~~~p~r~ig~Hf~~-P~~  117 (160)
                      .+..++..++++++|+||=++|.+-.++.-+...+-....++.++. .+|++...+ +++..+...    |+||.. |+.
T Consensus        49 ~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~----g~~~ldapVs  124 (297)
T 4gbj_A           49 ATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWY----GAHYVGAPIF  124 (297)
T ss_dssp             CEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEE
T ss_pred             CeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhc----CCceecCCcC
Confidence            4667788788999999999999988887766677777777776554 344333222 555544321    345543 332


Q ss_pred             CCc-------eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942         118 MMK-------LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG  157 (160)
Q Consensus       118 ~~~-------lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  157 (160)
                      -.+       +. ++.  .-++++++++..+++.+|+..+.+.+.+|
T Consensus       125 Gg~~~a~~g~l~-im~--gG~~~~~~~~~~~l~~~g~~i~~~g~~~G  168 (297)
T 4gbj_A          125 ARPEAVRAKVGN-ICL--SGNAGAKERIKPIVENFVKGVFDFGDDPG  168 (297)
T ss_dssp             CCHHHHHHTCCE-EEE--EECHHHHHHHHHHHHTTCSEEEECCSCTT
T ss_pred             CCccccccccce-eec--ccchhHHHHHHHHHHHhhCCeEEecCCcc
Confidence            211       22 222  33678999999999999998888876665

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=90.25  E-value=0.22  Score=42.83  Aligned_cols=22  Identities=9%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             CceecCChhhhcCCCcEEEEec
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAI   61 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav   61 (160)
                      +|+.|+|+.+|++|||+||=++
T Consensus        63 ~i~~t~d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           63 KVVKTESLDEAIEGADFIINTA   84 (477)
T ss_dssp             EEEEESCHHHHHTTCSEEEECC
T ss_pred             EEEEeCCHHHHhCCCCEEEECc
Confidence            5788999988999999999876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.07  E-value=0.44  Score=38.18  Aligned_cols=45  Identities=9%  Similarity=0.149  Sum_probs=37.3

Q ss_pred             eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeec
Q psy3942          42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN   88 (160)
Q Consensus        42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasn   88 (160)
                      ..++++++++.++|+||.|++....  .++++++...+++++++.+.
T Consensus        64 ~~~~~~~~~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           64 LLTSDIGLAVKDADVILIVVPAIHH--ASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEESCHHHHHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEES
T ss_pred             eecCCHHHHHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEc
Confidence            3567886678999999999998875  68999999999999866655

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=89.73  E-value=0.26  Score=39.69  Aligned_cols=108  Identities=12%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEe-ecCCCCCHH-HHhcccCCCCcEEEeecCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILA-SNTSSLSIT-EIASVTNRKDKFVGLHFFN-  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iia-snTS~l~i~-~la~~~~~p~r~ig~Hf~~-  114 (160)
                      ..+..++..++++++|+||=|+|.+-.++.=++..  +-+...++.+|. ++|++...+ +++..+...    |+||.. 
T Consensus        46 Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~----G~~~lDa  121 (300)
T 3obb_A           46 GASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARER----GLAMLDA  121 (300)
T ss_dssp             TCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTT----TCEEEEC
T ss_pred             CCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEec
Confidence            35667888788899999999999887776544432  334455555544 444443332 666655432    566664 


Q ss_pred             CCCCCc-------eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         115 PVPMMK-------LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       115 P~~~~~-------lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      |+.-.+       |.=++.|   +++++++++.+++.+|+..+.+.+
T Consensus       122 PVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~  165 (300)
T 3obb_A          122 PVSGGTAGAAAGTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGP  165 (300)
T ss_dssp             CEESCHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEES
T ss_pred             CCCCCHHHHHhCCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCC
Confidence            433222       3333433   689999999999999999888854

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=88.57  E-value=0.078  Score=40.19  Aligned_cols=102  Identities=12%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--------HHHhcccCCCCcEEEeecCCCCC
Q psy3942          46 KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--------TEIASVTNRKDKFVGLHFFNPVP  117 (160)
Q Consensus        46 ~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--------~~la~~~~~p~r~ig~Hf~~P~~  117 (160)
                      +..++++++|+|+=|++-. .++ +++ ++... .++++|.+-+.+++.        ..|.+.+.. .+++..=...|..
T Consensus        66 ~~~~~~~~aDvVilav~~~-~~~-~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~  140 (201)
T 2yjz_A           66 CYSEAASRSDVIVLAVHRE-HYD-FLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAW  140 (201)
Confidence            5556788999999999964 443 444 45443 467888887777763        445444432 3443332222333


Q ss_pred             CCc-eE------EEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942         118 MMK-LL------EVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD  154 (160)
Q Consensus       118 ~~~-lV------Evv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  154 (160)
                      ... -.      =++.|.  +++..+.+..+++.+|+.++.+.+
T Consensus       141 ~~~~g~l~g~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          141 ALQSGTLDASRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence            221 00      133343  577889999999999999988744

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=87.17  E-value=0.22  Score=40.93  Aligned_cols=68  Identities=26%  Similarity=0.380  Sum_probs=42.5

Q ss_pred             CceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHh-cccC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIA-SVTN  102 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la-~~~~  102 (160)
                      .+..++|++ ++++||+||=++              ..|..+-+++.+.+.+.|| ++++  .||-..+ ++.++ ....
T Consensus        75 ~i~~~~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vlvvtNPvdi-~t~~~~k~sg  151 (331)
T 4aj2_A           75 KIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLLIVSNPVDI-LTYVAWKISG  151 (331)
T ss_dssp             EEEECSSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHH-HHHHHHHHHC
T ss_pred             eEEEcCCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecChHHH-HHHHHHHHhC
Confidence            455678895 799999998554              2344667788889999864 5544  3654442 22222 2233


Q ss_pred             C-CCcEEEe
Q psy3942         103 R-KDKFVGL  110 (160)
Q Consensus       103 ~-p~r~ig~  110 (160)
                      . |.|++|+
T Consensus       152 ~p~~rviG~  160 (331)
T 4aj2_A          152 FPKNRVIGS  160 (331)
T ss_dssp             CCGGGEEEC
T ss_pred             CCHHHEEee
Confidence            3 4578776

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=84.79  E-value=1.7  Score=36.56  Aligned_cols=52  Identities=12%  Similarity=0.176  Sum_probs=44.3

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL   92 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l   92 (160)
                      .+|..++|++++++++|+||=+||=.  .=+++++++....++++++.+.+=++
T Consensus       103 ~~i~~t~dl~~al~~ad~ii~avPs~--~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          103 DNLVANPDLIDSVKDVDIIVFNIPHQ--FLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             SSEEEESCHHHHHTTCSEEEECSCGG--GHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             CCcEEeCCHHHHHhcCCEEEEECChh--hhHHHHHHhccccCCCceeEEecccc
Confidence            46888999988999999999999853  45789999999999999888877554

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=83.24  E-value=1.5  Score=35.53  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             cCceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcE--Eeec
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAI--LASN   88 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~i--iasn   88 (160)
                      ..++.++++.+++++||+||=++.              -|..+-+++.+.+.+.+.|+++  +.||
T Consensus        69 ~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           69 AGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             EEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            356667887788999999997753              1234567888999999856654  3454

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=82.71  E-value=2  Score=34.60  Aligned_cols=68  Identities=16%  Similarity=0.238  Sum_probs=41.3

Q ss_pred             Ccee---cCChhhhcCCCcEEEEecc--CC------------hHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHh----
Q psy3942          40 RIKG---SSKVEDSVSQSDLVIEAIV--EN------------MDIKHKLFTSVDKIAPASAILASNTSSLSITEIA----   98 (160)
Q Consensus        40 ~i~~---~~~~~~al~~adlViEav~--E~------------l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la----   98 (160)
                      +++.   ++|+++++++||+||=++.  ..            ..+=+++.+.+.+.+ |++++.-  .+-|+.-++    
T Consensus        52 ~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv--~sNPv~~~~~i~~  128 (314)
T 1mld_A           52 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICI--ISNPVNSTIPITA  128 (314)
T ss_dssp             EEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE--CSSCHHHHHHHHH
T ss_pred             eEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE--ECCCcchhHHHHH
Confidence            3554   3688778999999998862  11            145667778888888 5554433  133554432    


Q ss_pred             ----cccCC-CCcEEEe
Q psy3942          99 ----SVTNR-KDKFVGL  110 (160)
Q Consensus        99 ----~~~~~-p~r~ig~  110 (160)
                          ..... |.|++|+
T Consensus       129 ~~~~~~~~~p~~rvig~  145 (314)
T 1mld_A          129 EVFKKHGVYNPNKIFGV  145 (314)
T ss_dssp             HHHHHTTCCCTTSEEEC
T ss_pred             HHHHHcCCCCcceEEEe
Confidence                11222 5688876

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=82.06  E-value=1.5  Score=35.49  Aligned_cols=64  Identities=19%  Similarity=0.259  Sum_probs=40.7

Q ss_pred             cCChhhhcCCCcEEEEeccCC--------------hHHHHHHHHHHhhhCCCCcEEeecCCCCCHHH----Hhc----cc
Q psy3942          44 SSKVEDSVSQSDLVIEAIVEN--------------MDIKHKLFTSVDKIAPASAILASNTSSLSITE----IAS----VT  101 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~--------------l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~----la~----~~  101 (160)
                      ++|+.++++++|+||=++.-.              .+.=+++.+.+.+.+ |++++..  ++-|+.-    ++.    ..
T Consensus        67 t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv--~SNPv~~~~~~~t~~~~~~~  143 (326)
T 1smk_A           67 QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL--ISNPVNSTVPIAAEVFKKAG  143 (326)
T ss_dssp             HHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE--CCSSHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE--ECCchHHHHHHHHHHHHHcc
Confidence            557777899999999987411              145667778888887 5554444  2345554    322    12


Q ss_pred             CC-CCcEEEe
Q psy3942         102 NR-KDKFVGL  110 (160)
Q Consensus       102 ~~-p~r~ig~  110 (160)
                      .. |.|++|+
T Consensus       144 ~~p~~rviG~  153 (326)
T 1smk_A          144 TYDPKRLLGV  153 (326)
T ss_dssp             CCCTTSEEEC
T ss_pred             CCCcccEEEE
Confidence            32 4688887

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=80.58  E-value=3  Score=35.57  Aligned_cols=107  Identities=11%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccC--------ChHHHHHHHHHHhhhC----CCCcEEeecCCCCCHH-HHh-----c
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVE--------NMDIKHKLFTSVDKIA----PASAILASNTSSLSIT-EIA-----S   99 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E--------~l~~K~~v~~~l~~~~----~~~~iiasnTS~l~i~-~la-----~   99 (160)
                      -++++++++++++++++|+++=|||=        |+.-=.+..+.+.+.+    +.+.|+--+|...-.+ ++.     .
T Consensus        82 ~g~l~~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~  161 (444)
T 3vtf_A           82 SGRLSFAESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE  161 (444)
T ss_dssp             TTCEEECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT
T ss_pred             cCCeeEEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH
Confidence            36899999998889999999999973        2333334455555544    2344554444333222 222     1


Q ss_pred             ccCCCCcEEEeecCCCCCCCce---------EEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942         100 VTNRKDKFVGLHFFNPVPMMKL---------LEVIRTNDTSDATYNAVTEWGKSIGKT  148 (160)
Q Consensus       100 ~~~~p~r~ig~Hf~~P~~~~~l---------VEvv~~~~T~~~~~~~~~~~~~~lgk~  148 (160)
                      .....+-.++   |||-.+.+=         --||-| .+++++.+.+..+.+.++..
T Consensus       162 ~~~~~~f~v~---~~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~  215 (444)
T 3vtf_A          162 EAGGVKFSVA---SNPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAP  215 (444)
T ss_dssp             TTTTCCCEEE---ECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSC
T ss_pred             hCCCCCceee---cCcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCC
Confidence            2111111111   455444331         113333 45677888888888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	6e-26
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	8e-25
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	9e-11

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 95.4 bits (236), Expect = 6e-26
 Identities = 47/105 (44%), Positives = 62/105 (59%)

Query: 52  SQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLH 111
              DLV+EA+VEN  +K  +   V+      AILASNTS++SI+ +A    R + FVG+H
Sbjct: 82  GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMH 141

Query: 112 FFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156
           FFNPV MM L+EVIR   +SD        + K +GK  IV  D P
Sbjct: 142 FFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP 186

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 8e-25
 Identities = 66/145 (45%), Positives = 97/145 (66%)

Query: 12  EKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKL 71
           E+ +     +    + + G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++L
Sbjct: 48  EESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNEL 107

Query: 72  FTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTS 131
           F  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS
Sbjct: 108 FKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTS 167

Query: 132 DATYNAVTEWGKSIGKTTIVCKDTP 156
             T+ ++ ++ K++GK  + CKDTP
Sbjct: 168 QKTFESLVDFSKALGKHPVSCKDTP 192

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 8/156 (5%)

Query: 2   AAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSR---IKGSSKVEDSVSQSDLVI 58
           A  +GN E     I   +        +  +  I L       +K +S   ++V  +D+VI
Sbjct: 87  AHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVI 146

Query: 59  EAIVENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVTNRKD-KFVGLHFFNP 115
              +   + +  +        P  AI+  A    +    +I     R+D      H    
Sbjct: 147 TW-LPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCV 205

Query: 116 VPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV 151
             M   + +      S+   N + E GK        
Sbjct: 206 PEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFK 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.55
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.78
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.22
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.59
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.55
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.97
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.6
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.07
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.72
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.67
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.63
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.58
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.94
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.9
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.1
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.17
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.63
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	87.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.42
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	87.31
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.16
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.03
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	84.48
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	83.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.89
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.35

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-47  Score=293.90  Aligned_cols=155  Identities=46%  Similarity=0.764  Sum_probs=144.0

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchh----hhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMD   66 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~----~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~   66 (160)
                      ||++||+           ++++++|++.|+..++++...    ..+..+..+++|++++|+.+++++|||||||++||++
T Consensus        23 ~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad~ViEav~E~l~  102 (192)
T d1f0ya2          23 AAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLK  102 (192)
T ss_dssp             HHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEEECCCSCHH
T ss_pred             HHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHhhhcccceehhhcccchh
Confidence            7889999           788999999999887764321    2233677889999999998889999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcC
Q psy3942          67 IKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIG  146 (160)
Q Consensus        67 ~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lg  146 (160)
                      +|+++|++|++.++++|||+||||++++++|++.+.||+||+|+|||||||.+|||||++|++|++++++++.+|++++|
T Consensus       103 ~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~g~~T~~~~i~~~~~~~~~lg  182 (192)
T d1f0ya2         103 VKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG  182 (192)
T ss_dssp             HHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCcC
Q psy3942         147 KTTIVCKDTP  156 (160)
Q Consensus       147 k~pv~v~d~p  156 (160)
                      |+||+|+|.|
T Consensus       183 k~pV~v~D~P  192 (192)
T d1f0ya2         183 KHPVSCKDTP  192 (192)
T ss_dssp             CEEEEECSCT
T ss_pred             CEEEEeeccC
Confidence            9999999998

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.5e-46  Score=289.05  Aligned_cols=153  Identities=35%  Similarity=0.527  Sum_probs=143.1

Q ss_pred             hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942           2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK   70 (160)
Q Consensus         2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~   70 (160)
                      ||++||+           +++++++.+.++....++..... ..+..+++|+++++++ ++.+|||||||++|++++|++
T Consensus        23 ~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~  100 (186)
T d1wdka3          23 SASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPA-KMAEVLNGIRPTLSYG-DFGNVDLVVEAVVENPKVKQA  100 (186)
T ss_dssp             HHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHH-HHHHHHHHEEEESSST-TGGGCSEEEECCCSCHHHHHH
T ss_pred             HHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchh-hhhhhhceeecccccc-cccccceeeeeecchHHHHHH
Confidence            7889999           77888899999988877544433 3788999999999994 799999999999999999999


Q ss_pred             HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942          71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus        71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      +|++|++.|+++|||+||||++++++|++.+.+|+|++|+|||||+|.+||||||+|++|++++++++.+|++++||.||
T Consensus       101 lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv  180 (186)
T d1wdka3         101 VLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI  180 (186)
T ss_dssp             HHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcC
Q psy3942         151 VCKDTP  156 (160)
Q Consensus       151 ~v~d~p  156 (160)
                      +|+|+|
T Consensus       181 ~v~d~P  186 (186)
T d1wdka3         181 VVNDCP  186 (186)
T ss_dssp             EEESCT
T ss_pred             EEeccC
Confidence            999998

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=2.1e-14  Score=113.17  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH---HHHhcccCC-CCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI---TEIASVTNR-KDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i---~~la~~~~~-p~r~ig~Hf~~P  115 (160)
                      .+++++|..++++++|+||.|+|+. +.+++++++|...+++++||.. +|+++.   .+++..+.+ +-+++++|++++
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~~g~Iiid-~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~  205 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTH-ACTIPTTKFAKIFKDLGREDLNITSYHPGCV  205 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEEEE-CSSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCCCCcEEEe-cCCCcHHHHHHHHHhcccCCCEEECCCccCc
Confidence            4777888888999999999999976 8899999999999999999954 444444   356666654 569999999999


Q ss_pred             CCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         116 VPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       116 ~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      |.....+.++.+ +++++.++++..+++.+||.++++
T Consensus       206 pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         206 PEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             TTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            988888888765 689999999999999999999886

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.78  E-value=4.5e-08  Score=70.81  Aligned_cols=107  Identities=9%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC--
Q psy3942          42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM--  119 (160)
Q Consensus        42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~--  119 (160)
                      ...+++ ++++++|+||-|+|  ...-.++++++....++++++.+.+|. .............++++.|++..+...  
T Consensus        47 ~~~~~~-~~~~~~DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~  122 (165)
T d2f1ka2          47 EAGQDL-SLLQTAKIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGI  122 (165)
T ss_dssp             EEESCG-GGGTTCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSG
T ss_pred             eeeeec-ccccccccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccch
Confidence            345666 58999999999998  556889999999999999999765443 333332222334579999998765332  


Q ss_pred             ----------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         120 ----------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       120 ----------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                                ..+=++++..++++.++.+..|++.+|..+++|
T Consensus       123 ~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         123 DGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             GGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             hhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence                      233477889999999999999999999997764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.22  E-value=9.2e-06  Score=58.22  Aligned_cols=98  Identities=14%  Similarity=0.111  Sum_probs=74.5

Q ss_pred             hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhcccCCCCcEEEeecCCCCCC---------
Q psy3942          50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVTNRKDKFVGLHFFNPVPM---------  118 (160)
Q Consensus        50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~~~p~r~ig~Hf~~P~~~---------  118 (160)
                      ...++|+|+-|+|-  +.-.+++.+|....++++++...+|.-..  ..+...+  +.|++|.|++.-...         
T Consensus        59 ~~~~~dlIila~p~--~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSPV--RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSCH--HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCCc--hhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence            34689999999994  44567889999999999999988875443  3443333  668999999753321         


Q ss_pred             ---CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         119 ---MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       119 ---~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                         ...+=++++..|+++.++.+..|++.+|..++.
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence               223337889999999999999999999987653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.59  E-value=0.00034  Score=49.21  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=82.8

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM  119 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~  119 (160)
                      .++.+++. ++++++|+|+=|++  .   +.+-.-++++.+.+.++.|-.++.+++.|.+.+....+++.+++..|....
T Consensus        45 ~~~~~~~~-~~v~~~Div~lavk--P---~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~  118 (152)
T d1yqga2          45 GVETSATL-PELHSDDVLILAVK--P---QDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIG  118 (152)
T ss_dssp             CCEEESSC-CCCCTTSEEEECSC--H---HHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGT
T ss_pred             cccccccc-ccccccceEEEecC--H---HHHHHhHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhc
Confidence            46777888 47899999999985  1   223333445556788999999999999999999888899999998888877


Q ss_pred             ceEE-EecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         120 KLLE-VIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       120 ~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      .-+- +..+...+++..+.+..++..+|+.-
T Consensus       119 ~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~  149 (152)
T d1yqga2         119 LGVSGMYAEAEVSETDRRIADRIMKSVGLTV  149 (152)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTEEEE
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHHHHhCCCEE
Confidence            6454 55677788999999999999999753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.55  E-value=0.0001  Score=52.32  Aligned_cols=106  Identities=15%  Similarity=0.120  Sum_probs=81.4

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM-  118 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~-  118 (160)
                      .+.++.+..+.++++|+|+=|++-  ..-.+++    +...++.+|.|-++++++++|.+.+....+++-+++--|+.. 
T Consensus        44 g~~~~~~~~~~~~~~dvIilavkp--~~~~~vl----~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~  117 (152)
T d2ahra2          44 ALPYAMSHQDLIDQVDLVILGIKP--QLFETVL----KPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQIL  117 (152)
T ss_dssp             TCCBCSSHHHHHHTCSEEEECSCG--GGHHHHH----TTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGT
T ss_pred             ceeeechhhhhhhccceeeeecch--HhHHHHh----hhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcC
Confidence            466777887788999999999953  2223444    445678888899999999999998877777887775333332 


Q ss_pred             CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         119 MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      .+..-+..+..++++..+.+..++..+|+. +.+
T Consensus       118 ~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~v  150 (152)
T d2ahra2         118 QSSTALTGNALVSQELQARVRDLTDSFGST-FDI  150 (152)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHTTEEE-EEC
T ss_pred             ccceEEEeCCCCCHHHHHHHHHHHHhCCCE-EEe
Confidence            356778889999999999999999999974 444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00085  Score=46.80  Aligned_cols=97  Identities=15%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC-C-HHHHhcccCCCCcEEEeecCCCCCCC----ceE
Q psy3942          49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL-S-ITEIASVTNRKDKFVGLHFFNPVPMM----KLL  122 (160)
Q Consensus        49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l-~-i~~la~~~~~p~r~ig~Hf~~P~~~~----~lV  122 (160)
                      ..+.++|+++-++|-.  .-.+++.++-...++++++.--+|.- + +.++.+.  .+.+++|.|++.-+...    ..+
T Consensus        49 ~~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~~~  124 (152)
T d2pv7a2          49 SILANADVVIVSVPIN--LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVV  124 (152)
T ss_dssp             HHHTTCSEEEECSCGG--GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEE
T ss_pred             hhhhhccccccccchh--hheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCcEE
Confidence            4678999999999854  55678899999999999887444322 1 2233332  46789999998755433    233


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942         123 EVIRTNDTSDATYNAVTEWGKSIGKTTIV  151 (160)
Q Consensus       123 Evv~~~~T~~~~~~~~~~~~~~lgk~pv~  151 (160)
                      =++  +..+++.++++..+++.+|...+.
T Consensus       125 v~~--~g~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         125 VRC--DGRFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEE--EEECGGGTHHHHHHHHHTTCEEEE
T ss_pred             EEe--cCCCHHHHHHHHHHHHHhCCEEEe
Confidence            333  345667889999999999998764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0015  Score=45.37  Aligned_cols=99  Identities=11%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc----
Q psy3942          45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK----  120 (160)
Q Consensus        45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~----  120 (160)
                      .+..++++.+|+|+=|+|.+. + .+++.+   +..++.++.+.+++.++..+..     .+-.++|+..++....    
T Consensus        47 ~~~~~~~~~~DiVil~v~d~~-i-~~v~~~---l~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~  116 (153)
T d2i76a2          47 ATLEKHPELNGVVFVIVPDRY-I-KTVANH---LNLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALE  116 (153)
T ss_dssp             CSSCCCCC---CEEECSCTTT-H-HHHHTT---TCCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGG
T ss_pred             cchhhhhccCcEEEEeccchh-h-hHHHhh---hcccceeeeecccchhhhhhhh-----hccccceeeeecccccchhh
Confidence            345468899999999999753 2 234333   3457899998888888776643     3457788766443111    


Q ss_pred             -eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942         121 -LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK  153 (160)
Q Consensus       121 -lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  153 (160)
                       +-.+......+++.++.+..+++.+|..++.+.
T Consensus       117 ~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~  150 (153)
T d2i76a2         117 MKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP  150 (153)
T ss_dssp             CGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECC
T ss_pred             hccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeC
Confidence             111111223467889999999999999999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.34  E-value=0.0034  Score=44.08  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             ecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccCC-CCc
Q psy3942          43 GSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTNR-KDK  106 (160)
Q Consensus        43 ~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~~-p~r  106 (160)
                      .+.++ ++++|||+|+-++..              |.++-+++..+|.+.+|+.. ++.||-..+-..-+...++. |+|
T Consensus        65 ~~~d~-~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~r  143 (148)
T d1ldna1          65 WHGDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHER  143 (148)
T ss_dssp             EECCG-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGG
T ss_pred             EECCH-HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhh
Confidence            46778 589999999976543              45677889999999986544 33477666433344444555 479


Q ss_pred             EEEe
Q psy3942         107 FVGL  110 (160)
Q Consensus       107 ~ig~  110 (160)
                      ++|+
T Consensus       144 ViG~  147 (148)
T d1ldna1         144 VIGS  147 (148)
T ss_dssp             EEEC
T ss_pred             eecC
Confidence            9996

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.07  E-value=0.0015  Score=46.20  Aligned_cols=110  Identities=12%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEeecCCCCCHH--HHhcccC-CCCcEEEeecCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILASNTSSLSIT--EIASVTN-RKDKFVGLHFFN  114 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iiasnTS~l~i~--~la~~~~-~p~r~ig~Hf~~  114 (160)
                      ......+..+.++++|+|+-|+|..-.++.=++  ..+-....++++|...|+..|-+  +++..+. +.-+++......
T Consensus        43 ~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~g  122 (161)
T d1vpda2          43 GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG  122 (161)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES
T ss_pred             hhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccC
Confidence            455677777789999999999999877776554  34666777777776544443322  4444443 223444443322


Q ss_pred             -CCC--CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         115 -PVP--MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       115 -P~~--~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                       |+.  ..++.=++.|   +++.++++..+++.+|+..+.+
T Consensus       123 g~~~a~~g~l~~~~gG---~~~~~~~~~~il~~~~~~i~~~  160 (161)
T d1vpda2         123 GEPKAIDGTLSVMVGG---DKAIFDKYYDLMKAMAGSVVHT  160 (161)
T ss_dssp             HHHHHHHTCEEEEEES---CHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEC
Confidence             211  1233433333   6899999999999999887654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.90  E-value=0.026  Score=40.16  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CceecCChhhhcCCCcEEEEecc----------------------------------CChHHHHHHHHHHhhhCCCCcEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV----------------------------------ENMDIKHKLFTSVDKIAPASAIL   85 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~----------------------------------E~l~~K~~v~~~l~~~~~~~~ii   85 (160)
                      ++..++|..++++|+|+|+=++.                                  -+..+=+++.+++.+.| ||+++
T Consensus        64 ~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~  142 (169)
T d1s6ya1          64 EIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWL  142 (169)
T ss_dssp             EEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred             eeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEE
Confidence            45667887678999999999984                                  13344578899999997 55654


Q ss_pred             eecCCCCCHHHH---hcccCCCCcEEEe
Q psy3942          86 ASNTSSLSITEI---ASVTNRKDKFVGL  110 (160)
Q Consensus        86 asnTS~l~i~~l---a~~~~~p~r~ig~  110 (160)
                      ..  .+-|+..+   +....-+.|++|+
T Consensus       143 i~--vtNPvdv~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         143 IN--FTNPAGMVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             EE--CSSSHHHHHHHHHHHCCCCCEEEC
T ss_pred             EE--eCChHHHHHHHHHHHCCCCCEEee
Confidence            43  23344333   3333335699986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.72  E-value=0.031  Score=38.88  Aligned_cols=70  Identities=16%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             CceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcE-EeecCCCCCHHHHhcccCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAI-LASNTSSLSITEIASVTNR-  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~i-iasnTS~l~i~~la~~~~~-  103 (160)
                      ....+.|++ ++++||+|+=++.-              |..+-+++..+|.+.++...+ ++||...+-...+...+++ 
T Consensus        60 ~~~~~~d~~-~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p  138 (146)
T d1ez4a1          60 KKIYSGEYS-DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFP  138 (146)
T ss_dssp             CEEEECCGG-GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCC
T ss_pred             ceEeeccHH-HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcC
Confidence            345577884 79999999988632              133667888889988755543 4466555444444455565 


Q ss_pred             CCcEEEe
Q psy3942         104 KDKFVGL  110 (160)
Q Consensus       104 p~r~ig~  110 (160)
                      |+|++|+
T Consensus       139 ~~rViG~  145 (146)
T d1ez4a1         139 KERVIGS  145 (146)
T ss_dssp             GGGEEEC
T ss_pred             ccceecC
Confidence            4789986

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.67  E-value=0.039  Score=39.26  Aligned_cols=47  Identities=11%  Similarity=0.123  Sum_probs=39.6

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeec
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN   88 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasn   88 (160)
                      .+..++|++++++++|+|+.|+|  ....+++++++.....++.++..+
T Consensus        58 ~i~~~~~~~~~~~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          58 EIFWPEQLEKCLENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             EEECGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccccccHHHHHhccchhhcccc--hhhhHHHHHhhccccccceecccc
Confidence            46678899888999999999998  667889999999999887766543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.63  E-value=0.02  Score=39.49  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             cCceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhcccC
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVTN  102 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~~  102 (160)
                      .++..++++ ++++|+|+|+=++.              .|..+-+++...|.+.| |++++  .||-...-..-+...++
T Consensus        56 ~~i~~~~~~-~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd~~~~~~~~~sg  133 (142)
T d1guza1          56 TKVTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRSG  133 (142)
T ss_dssp             CEEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHHC
T ss_pred             ceEEecCCH-HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChHHHHHHHHHHhC
Confidence            345667888 58999999998853              23345678888999988 45554  46643322112222334


Q ss_pred             C-CCcEEEe
Q psy3942         103 R-KDKFVGL  110 (160)
Q Consensus       103 ~-p~r~ig~  110 (160)
                      . |+|++|+
T Consensus       134 ~p~~rviG~  142 (142)
T d1guza1         134 LPKERVIGM  142 (142)
T ss_dssp             SCGGGEEEE
T ss_pred             CChHhEeeC
Confidence            4 4799996

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.58  E-value=0.21  Score=34.30  Aligned_cols=75  Identities=8%  Similarity=0.059  Sum_probs=49.4

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeec-CCCCCHH---HHhcccCCCCcEEEeecCCC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN-TSSLSIT---EIASVTNRKDKFVGLHFFNP  115 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasn-TS~l~i~---~la~~~~~p~r~ig~Hf~~P  115 (160)
                      ....++++.++++++|+||-|++.+.  ..+++.+|..++.++++|... +......   ++......+...++ ++..+
T Consensus        59 ~~~~~~~~~e~~~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  135 (184)
T d1bg6a2          59 PDLLTSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIG-ETSSM  135 (184)
T ss_dssp             CSEEESCHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTCCCCEEE-EESSC
T ss_pred             hhhhhhhhHhHhcCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcCCCceEE-EecCC
Confidence            34557788788999999999998775  688999999999998866533 2222222   22222334444444 55555


Q ss_pred             CC
Q psy3942         116 VP  117 (160)
Q Consensus       116 ~~  117 (160)
                      ++
T Consensus       136 ~~  137 (184)
T d1bg6a2         136 LF  137 (184)
T ss_dssp             SE
T ss_pred             cc
Confidence            44

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.11  E-value=0.072  Score=36.86  Aligned_cols=70  Identities=19%  Similarity=0.337  Sum_probs=47.4

Q ss_pred             CceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcE-EeecCCCCCHHHHhcccCC-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAI-LASNTSSLSITEIASVTNR-  103 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~i-iasnTS~l~i~~la~~~~~-  103 (160)
                      ++..++++ ++++++|+|+=+..              .|.++-+++..+|.+.++...+ +.||--..-..-+...+.. 
T Consensus        57 ~i~~~~~~-~~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p  135 (143)
T d1llda1          57 SIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLP  135 (143)
T ss_dssp             EEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCC
T ss_pred             eeecCCCH-HHhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCC
Confidence            45567888 47999999997653              2566888999999999765553 4566555433333334444 


Q ss_pred             CCcEEEe
Q psy3942         104 KDKFVGL  110 (160)
Q Consensus       104 p~r~ig~  110 (160)
                      |+|++|+
T Consensus       136 ~~rViG~  142 (143)
T d1llda1         136 ENQIFGS  142 (143)
T ss_dssp             TTSEEEC
T ss_pred             hhhccCC
Confidence            5799996

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.94  E-value=0.053  Score=37.89  Aligned_cols=71  Identities=15%  Similarity=0.275  Sum_probs=43.6

Q ss_pred             CceecCChhhhcCCCcEEEEecc------------C-------ChHHHHHHHHHHhhhCCCCcEE-eecCCCCCHHHHhc
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV------------E-------NMDIKHKLFTSVDKIAPASAIL-ASNTSSLSITEIAS   99 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~------------E-------~l~~K~~v~~~l~~~~~~~~ii-asnTS~l~i~~la~   99 (160)
                      .+..+++++++++++|+|+=+..            -       |.++=+++..++.+.+++..+| .||--..-..-+..
T Consensus        63 ~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~~~  142 (154)
T d1pzga1          63 SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE  142 (154)
T ss_dssp             CEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHH
T ss_pred             EEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHH
Confidence            35557777678999999998762            1       2335677888888887654433 34433222222223


Q ss_pred             ccCC-CCcEEEe
Q psy3942         100 VTNR-KDKFVGL  110 (160)
Q Consensus       100 ~~~~-p~r~ig~  110 (160)
                      .++. |+|++||
T Consensus       143 ~sg~p~~rViG~  154 (154)
T d1pzga1         143 ASGVPTNMICGM  154 (154)
T ss_dssp             HHCCCGGGEEEC
T ss_pred             HhCcChhcEecC
Confidence            3344 5799996

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.90  E-value=0.069  Score=36.85  Aligned_cols=67  Identities=12%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             CceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHh----ccc
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIA----SVT  101 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la----~~~  101 (160)
                      ++..++|+ ++++++|+|+=+..              .|..+=+++..++.+.+ |++++..-|-  |+.-+.    ..+
T Consensus        57 ~i~~~~d~-~~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtN--PvD~~t~~~~k~s  132 (142)
T d1ojua1          57 KIVGGADY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTN--PMDVMTYIMWKES  132 (142)
T ss_dssp             EEEEESCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSS--SHHHHHHHHHHHS
T ss_pred             ccccCCCH-HHhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecC--ChHHHHHHHHHHH
Confidence            46677888 58999999997664              24446667777788876 5565443222  443222    334


Q ss_pred             CC-CCcEEEe
Q psy3942         102 NR-KDKFVGL  110 (160)
Q Consensus       102 ~~-p~r~ig~  110 (160)
                      ++ |+|++|+
T Consensus       133 g~p~~rViG~  142 (142)
T d1ojua1         133 GKPRNEVFGM  142 (142)
T ss_dssp             CCCTTSEEEC
T ss_pred             CCChhcEecC
Confidence            44 6799996

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=0.13  Score=36.34  Aligned_cols=50  Identities=14%  Similarity=0.321  Sum_probs=36.7

Q ss_pred             cCceecCChhhhcCCCcEEEEecc----------------------------------------CChHHHHHHHHHHhhh
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIV----------------------------------------ENMDIKHKLFTSVDKI   78 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~----------------------------------------E~l~~K~~v~~~l~~~   78 (160)
                      -++..++|++++++|||+|+-++.                                        -+..+=+++.+.+.+.
T Consensus        62 ~~i~~~td~~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~  141 (171)
T d1obba1          62 LKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL  141 (171)
T ss_dssp             CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCChhhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHH
Confidence            357778898889999999997642                                        1445667899999999


Q ss_pred             CCCCcEEe--ecC
Q psy3942          79 APASAILA--SNT   89 (160)
Q Consensus        79 ~~~~~iia--snT   89 (160)
                      | |++++.  ||-
T Consensus       142 ~-p~a~~i~~TNP  153 (171)
T d1obba1         142 S-PKAWYLQAANP  153 (171)
T ss_dssp             C-TTCEEEECSSC
T ss_pred             C-cCeEEEEECCh
Confidence            8 455443  554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.17  E-value=0.14  Score=35.21  Aligned_cols=65  Identities=17%  Similarity=0.239  Sum_probs=39.5

Q ss_pred             cCChhhhcCCCcEEEEeccCC--------------hHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHh-cccCC-CCc
Q psy3942          44 SSKVEDSVSQSDLVIEAIVEN--------------MDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIA-SVTNR-KDK  106 (160)
Q Consensus        44 ~~~~~~al~~adlViEav~E~--------------l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la-~~~~~-p~r  106 (160)
                      +.++ +++++||+|+-+..-.              .++=+++..++.+.+|+.. +++||-..+ ++.++ ..++. |+|
T Consensus        60 ~~~~-~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv-~t~~~~k~sg~p~~r  137 (142)
T d1y6ja1          60 AGDY-SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDI-ITYMIQKWSGLPVGK  137 (142)
T ss_dssp             --CG-GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHH-HHHHHHHHHTCCTTT
T ss_pred             eCcH-HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHH-HHHHHHHHHCCCccc
Confidence            4467 5799999999984422              3344577778888875443 345664443 33333 34455 469


Q ss_pred             EEEe
Q psy3942         107 FVGL  110 (160)
Q Consensus       107 ~ig~  110 (160)
                      ++|+
T Consensus       138 ViG~  141 (142)
T d1y6ja1         138 VIGS  141 (142)
T ss_dssp             EEEC
T ss_pred             eecC
Confidence            9996

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.63  E-value=0.18  Score=36.14  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=59.2

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-----CCCCcEEeecC------CCCCHHHHhcccCCCCcE
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-----APASAILASNT------SSLSITEIASVTNRKDKF  107 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-----~~~~~iiasnT------S~l~i~~la~~~~~p~r~  107 (160)
                      .+|++++|++++++++|+|+-|+|  ...-+++++++...     ..++.+|.+.|      +...++++.... .|.+-
T Consensus        63 ~~i~~t~~l~~a~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~-~~~~~  139 (189)
T d1n1ea2          63 SNITFTSDVEKAYNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEF-LPSPL  139 (189)
T ss_dssp             TTEEEESCHHHHHTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTT-SCGGG
T ss_pred             cccccchhhhhccCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHH-hcccc
Confidence            578999999889999999999997  55567788887653     34566565544      344555655432 23332


Q ss_pred             EEeecCCCCCCCc-----eEEEecCCCCCHHHHHHHHHHHH
Q psy3942         108 VGLHFFNPVPMMK-----LLEVIRTNDTSDATYNAVTEWGK  143 (160)
Q Consensus       108 ig~Hf~~P~~~~~-----lVEvv~~~~T~~~~~~~~~~~~~  143 (160)
                      +++ ...|-+...     .-.++- ..++.+..+.+.+++.
T Consensus       140 ~~v-lsGP~~A~Ev~~~~pt~~vi-As~~~~~a~~i~~lfs  178 (189)
T d1n1ea2         140 LSV-LAGPSFAIEVATGVFTCVSI-ASADINVARRLQRIMS  178 (189)
T ss_dssp             EEE-EESSCCHHHHHTTCCEEEEE-ECSSHHHHHHHHHHHS
T ss_pred             eEE-EecCCcHHHHHcCCCcEEEE-EeCCHHHHHHHHHHhC
Confidence            332 234543211     122222 2446666666666653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.58  E-value=0.12  Score=35.37  Aligned_cols=105  Identities=14%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC--
Q psy3942          42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM--  119 (160)
Q Consensus        42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~--  119 (160)
                      .+..+.+++++++|+|+=|+|-+-..  ++..++....+...|.+|+.|.-...++++.+.. .+++....+.+++..  
T Consensus        45 ~~~~~~~e~~~~~diIi~~v~~~~~~--~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~  121 (152)
T d1i36a2          45 GVTETSEEDVYSCPVVISAVTPGVAL--GAARRAGRHVRGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGA  121 (152)
T ss_dssp             TCEECCHHHHHTSSEEEECSCGGGHH--HHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGG
T ss_pred             cccccHHHHHhhcCeEEEEecCchHH--HHHHhhcccCCceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccC
Confidence            34556667899999999999976443  4455566655443344555555556788777653 357777776654421  


Q ss_pred             -ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942         120 -KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP  156 (160)
Q Consensus       120 -~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~p  156 (160)
                       ..+ ++.|+.+  +.+    +.+..+|.....+.+.|
T Consensus       122 ~~~~-~~~G~~~--~~~----~~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         122 DIRI-IASGRDA--EEF----MKLNRYGLNIEVRGREP  152 (152)
T ss_dssp             GCEE-EEESTTH--HHH----HGGGGGTCEEEECSSST
T ss_pred             CcEE-EEECCCH--HHH----HHHHHcCCeeeEcCCCC
Confidence             122 4566653  322    23678888777776554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.42  E-value=0.16  Score=35.11  Aligned_cols=109  Identities=10%  Similarity=0.140  Sum_probs=66.3

Q ss_pred             CceecCChhhhcCCCcEEEEeccCChHHHHHHHHH---HhhhCCCCcEEe-ecCCCCCHH-HHhcccC-CCCcEEEeecC
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS---VDKIAPASAILA-SNTSSLSIT-EIASVTN-RKDKFVGLHFF  113 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~---l~~~~~~~~iia-snTS~l~i~-~la~~~~-~p~r~ig~Hf~  113 (160)
                      ......+..+.++.+|+|+-|++.+-..+ +++..   +-....++.+|. ++|++...+ +++..+. +--+++.++-.
T Consensus        44 ~~~~~~~~~e~~~~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~  122 (162)
T d3cuma2          44 GASAARSARDAVQGADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS  122 (162)
T ss_dssp             TCEECSSHHHHHTSCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             hccccchhhhhccccCeeeecccchhhHH-HHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccc
Confidence            34445666678999999999999887655 55543   344455555444 444443222 4444442 22355555443


Q ss_pred             CCCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942         114 NPVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC  152 (160)
Q Consensus       114 ~P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v  152 (160)
                      ..|.   ...|.=++.   .++++++++..+++.+|+..+.+
T Consensus       123 Gg~~~a~~G~l~~~~g---G~~~~~~~~~~il~~~~~~v~~~  161 (162)
T d3cuma2         123 GGTAGAAAGTLTFMVG---GDAEALEKARPLFEAMGRNIFHA  161 (162)
T ss_dssp             SCHHHHHHTCEEEEEE---SCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cCccccccCCeEEEec---CCHHHHHHHHHHHHHHcCccEEC
Confidence            3322   223333333   47889999999999999887654

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.31  E-value=0.13  Score=36.03  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=17.9

Q ss_pred             CceecCChhhhcCCCcEEEEecc
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV   62 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~   62 (160)
                      ++..+++.+++++|||+|+=++.
T Consensus        58 ~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1          58 KVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEECSSHHHHHTTCSEEEECCC
T ss_pred             eEEEecCcccccCCCCEEEEecc
Confidence            35556676679999999998765

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.16  E-value=0.18  Score=34.82  Aligned_cols=70  Identities=24%  Similarity=0.208  Sum_probs=44.5

Q ss_pred             CceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCc--EEeecCCCCCHHHHhc-cc-
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASA--ILASNTSSLSITEIAS-VT-  101 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~--iiasnTS~l~i~~la~-~~-  101 (160)
                      .+..+++..++++++|+||=+..              .|..+=+++...+.+.+++++  |++||--. .++.++. .+ 
T Consensus        66 ~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD-~mt~v~~k~s~  144 (154)
T d5mdha1          66 DVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN-TNCLTASKSAP  144 (154)
T ss_dssp             EEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH-HHHHHHHHTCT
T ss_pred             ccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH-HHHHHHHHHcC
Confidence            35555665578999999997652              123566778888899999887  34677321 2223332 23 


Q ss_pred             CC-CCcEEEe
Q psy3942         102 NR-KDKFVGL  110 (160)
Q Consensus       102 ~~-p~r~ig~  110 (160)
                      +. ++||+||
T Consensus       145 g~P~~~v~~m  154 (154)
T d5mdha1         145 SIPKENFSCL  154 (154)
T ss_dssp             TSCGGGEEEC
T ss_pred             CCCHHHEeCC
Confidence            43 5788886

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.03  E-value=0.44  Score=33.48  Aligned_cols=46  Identities=13%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CceecCChhhhcCCCcEEEEeccC----------------------------------ChHHHHHHHHHHhhhCCCCcEE
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIVE----------------------------------NMDIKHKLFTSVDKIAPASAIL   85 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~E----------------------------------~l~~K~~v~~~l~~~~~~~~ii   85 (160)
                      ++..++|+.++++|||+||=++.=                                  +..+=+++...+.+.| |++++
T Consensus        64 ~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~l  142 (167)
T d1u8xx1          64 EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWM  142 (167)
T ss_dssp             EEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred             ceEecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEE
Confidence            567788887899999999998731                                  2344468889999998 55654


Q ss_pred             e
Q psy3942          86 A   86 (160)
Q Consensus        86 a   86 (160)
                      .
T Consensus       143 i  143 (167)
T d1u8xx1         143 L  143 (167)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=84.48  E-value=0.38  Score=32.71  Aligned_cols=67  Identities=18%  Similarity=0.397  Sum_probs=41.2

Q ss_pred             cCceecCChhhhcCCCcEEEEeccCC--------------hHHHHHHHHHHhhhCCCCcEEeecCCCCCHHH---Hhc-c
Q psy3942          39 SRIKGSSKVEDSVSQSDLVIEAIVEN--------------MDIKHKLFTSVDKIAPASAILASNTSSLSITE---IAS-V  100 (160)
Q Consensus        39 ~~i~~~~~~~~al~~adlViEav~E~--------------l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~---la~-~  100 (160)
                      .+++.+.|++ +++++|+|+-+..-.              .++=+++..+|.+.+| ++++..  .+-|+.-   ++. .
T Consensus        56 ~~i~~~~d~~-~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aiviv--vtNPvDv~t~~~~~~  131 (142)
T d1uxja1          56 VRVTGTNNYA-DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIM--VNNPLDAMTYLAAEV  131 (142)
T ss_dssp             CCEEEESCGG-GGTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEE--CSSSHHHHHHHHHHH
T ss_pred             CEEEecCcHH-HhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEE--eCCchHHHHHHHHHH
Confidence            3566788995 799999999988421              1233677788888765 554443  2334433   332 2


Q ss_pred             cCC-CCcEEE
Q psy3942         101 TNR-KDKFVG  109 (160)
Q Consensus       101 ~~~-p~r~ig  109 (160)
                      ++. |+|++|
T Consensus       132 sglp~~rViG  141 (142)
T d1uxja1         132 SGFPKERVIG  141 (142)
T ss_dssp             HCCCGGGEEE
T ss_pred             HCcCcccccC
Confidence            233 568887

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.77  E-value=0.33  Score=33.69  Aligned_cols=98  Identities=5%  Similarity=0.009  Sum_probs=61.3

Q ss_pred             hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHH-HHhcccC-CCCcEEEeecCCCCCC-C-ceEE
Q psy3942          49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASA-ILASNTSSLSIT-EIASVTN-RKDKFVGLHFFNPVPM-M-KLLE  123 (160)
Q Consensus        49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~-~la~~~~-~p~r~ig~Hf~~P~~~-~-~lVE  123 (160)
                      ..+..++.++.+++....++..+. .+.....++. ++-++|+....+ +++..+. ..-+++....+..+.. . ...=
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~  142 (178)
T d1pgja2          64 ASLKKPRKALILVQAGAATDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAF  142 (178)
T ss_dssp             HHBCSSCEEEECCCCSHHHHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEE
T ss_pred             HhcccceEEEEeecCcchhhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEE
Confidence            457889999999998888876554 4455555554 554555554433 5555553 3446666655543221 1 0111


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942         124 VIRTNDTSDATYNAVTEWGKSIGKTTI  150 (160)
Q Consensus       124 vv~~~~T~~~~~~~~~~~~~~lgk~pv  150 (160)
                      ++.|   ++++++++..+++.+++.+.
T Consensus       143 mvgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         143 FPGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             EeeC---CHHHHHHHHHHHHHHhcccc
Confidence            3333   68999999999999998653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.89  E-value=5.6  Score=27.65  Aligned_cols=109  Identities=10%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             hcCceecCChhhhcCCCcEEEEeccCC--------h----HHHHHHHHHHhhhCCCCcEEeecCCCCCHHH-H----h-c
Q psy3942          38 LSRIKGSSKVEDSVSQSDLVIEAIVEN--------M----DIKHKLFTSVDKIAPASAILASNTSSLSITE-I----A-S   99 (160)
Q Consensus        38 l~~i~~~~~~~~al~~adlViEav~E~--------l----~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~-l----a-~   99 (160)
                      ..++..++++.+++.++|+++=|+|=.        .    .+.+.+...+...-+.+.|+..+|...-.++ +    . .
T Consensus        61 ~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~  140 (202)
T d1mv8a2          61 TGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (202)
T ss_dssp             TTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             ccccccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhc
Confidence            467889999988899999999999743        2    2333333333333333445555554443332 1    1 1


Q ss_pred             ccCC--CCcEEEeecCCCCCCCc--eEE-------EecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942         100 VTNR--KDKFVGLHFFNPVPMMK--LLE-------VIRTNDTSDATYNAVTEWGKSIGKTT  149 (160)
Q Consensus       100 ~~~~--p~r~ig~Hf~~P~~~~~--lVE-------vv~~~~T~~~~~~~~~~~~~~lgk~p  149 (160)
                      ..+.  ...+--  .|+|-...+  .++       +|-| ..+++..+.+.+|++.+...-
T Consensus       141 ~~~~~~~~~~~~--~~~PE~~~~G~a~~d~~~~~~iViG-~~~~~~~~~~~~ly~~i~~~i  198 (202)
T d1mv8a2         141 CSGKKAGVDFGV--GTNPEFLRESTAIKDYDFPPMTVIG-ELDKQTGDLLEEIYRELDAPI  198 (202)
T ss_dssp             HHSCCBTTTBEE--EECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHHTTSSSCE
T ss_pred             cccccccccccc--hhhhhhhcccchhhhhcCCCeEEEE-eCCHHHHHHHHHHHHhcCCCe
Confidence            1111  111111  134433322  111       3433 346889999999999987643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.35  E-value=0.96  Score=31.82  Aligned_cols=70  Identities=11%  Similarity=0.071  Sum_probs=44.3

Q ss_pred             CceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHh-c-cc
Q psy3942          40 RIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIA-S-VT  101 (160)
Q Consensus        40 ~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la-~-~~  101 (160)
                      .+..+++..++++++|+||=+..              .|..+=+++-..|.+.++++++|  +||.-. ..+-++ . ..
T Consensus        87 ~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd-~~t~ia~k~a~  165 (175)
T d7mdha1          87 EVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN-TNALICLKNAP  165 (175)
T ss_dssp             EEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH-HHHHHHHHTCT
T ss_pred             CccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH-HHHHHHHHHCC
Confidence            44556665578999999997652              23455678888899999999844  455322 122223 2 22


Q ss_pred             CC-CCcEEEe
Q psy3942         102 NR-KDKFVGL  110 (160)
Q Consensus       102 ~~-p~r~ig~  110 (160)
                      +. |+||+||
T Consensus       166 ~ip~~~i~~m  175 (175)
T d7mdha1         166 DIPAKNFHAL  175 (175)
T ss_dssp             TSCGGGEEEC
T ss_pred             CCCHHHEeCC
Confidence            33 6788876