Psyllid ID: psy3952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFKLDELSSR
Secondary Structure (PSIPRED)
cHHHHHHcccEEEcccEEEEEEEcccEEEEEEccccEEEEcEEEEcccccHHHHHHHccccccccEEEEEEEEEEEcccccccccccEEEcccccccccEEEEEEcccccEEEcccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHccccccccccccccccccEEEcccccccccEEEEEcccEEEEEccccHHHHccHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccEEEEcEEEEEEEEccccEEEEEccccEEEEEEEEEcccHHHHHHHHHcccccccEEEEccccEEEcccHHcccEcccEcccccccccEEEEEEcccccccEEEcHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccEEEEEEcccccccccEEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MGEEFCELGGEIRLNQQVEsfkenpesvtistkqgdhlESSYALVCAGLQADEMALksgcslepaivpfrgeylllnpakqhlvrgniypvpdpnfpflgvhftprmdgsvwlgpnavlafkkegyrwrdfSVRELFStlrypgfwrlGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIeagdiqrgpsgvraqalsssgdlvddfvfhsagrtlhcrnapspaatsSLAIAKHILNELRREfkldelssr
Flexible Loop (DISEMBL)
MGEefcelggeirlNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELfstlrypgfwrlGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEagdiqrgpSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELrrefkldelssr
Low Complexity Region (SEG)
MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFKLDELSSR
Disordered region (IsUnstruct)
***************************************SSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGD*****************DLVDDFVFHSAGRTL************************************
Disordered Region (DISOPRED)
MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF********
Disordered Region (DISEMBL)
MGEEFCELGGEIRLNQQVE**************QGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFKLDELSSR
Disordered Region (DISPRO)
MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFKL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFKLDELSSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
A8X2R1	434	L-2-hydroxyglutarate dehy	N/A	N/A	0.972	0.564	0.509	1e-67
A7SMW7	456	L-2-hydroxyglutarate dehy	N/A	N/A	0.972	0.537	0.498	2e-67
Q9N4Z0	433	L-2-hydroxyglutarate dehy	yes	N/A	0.976	0.568	0.513	6e-67
A7MBI3	463	L-2-hydroxyglutarate dehy	yes	N/A	0.968	0.526	0.484	1e-66
Q9H9P8	463	L-2-hydroxyglutarate dehy	yes	N/A	0.968	0.526	0.488	1e-65
Q91YP0	464	L-2-hydroxyglutarate dehy	yes	N/A	0.968	0.525	0.488	2e-65
Q55GI5	446	L-2-hydroxyglutarate dehy	yes	N/A	0.932	0.526	0.414	2e-53
P37339	422	L-2-hydroxyglutarate oxid	N/A	N/A	0.948	0.566	0.452	5e-52
Q5R9N7	419	L-2-hydroxyglutarate dehy	yes	N/A	0.793	0.477	0.430	6e-52
Q9ZMY5	450	Malate:quinone oxidoreduc	yes	N/A	0.412	0.231	0.254	4e-05

>sp|A8X2R1|L2HDH_CAEBR L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG06643 PE=3 SV=2

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 173/257 (67%), Gaps = 12/257 (4%)

Query: 1   MGEEFCELGGEIRLNQQVESFKEN------PESVTISTKQGDHLESSYALVCAGLQADEM 54
            GE+F + GG+I  +  +E  ++N      P  V+      D  E+   + CAGLQ+D +
Sbjct: 179 FGEDFEKRGGKIYTSYPLEKIEDNLKDSNYPIRVSSDPSYAD-FETKNLITCAGLQSDRV 237

Query: 55  ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
           A  SGCS +P IVPFRGEYLLL P K+HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLG
Sbjct: 238 AALSGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLG 297

Query: 115 PNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK 174
           PNAVLA+K+EGY +   S  +L  +L Y G  +L  K+  +G KE+    + + +V +L+
Sbjct: 298 PNAVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGIWIAAQVKQLQ 357

Query: 175 QYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAATSS 229
           ++I E++  D+ RGPSGVRAQA+ S+G+LVDDFVF S     +   +H RNAPSPAATSS
Sbjct: 358 RFIPELKYSDVTRGPSGVRAQAMDSAGNLVDDFVFDSGTGKLSSLIMHVRNAPSPAATSS 417

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +E    FKL
Sbjct: 418 LAIAKMITSEAITRFKL 434

Caenorhabditis briggsae (taxid: 6238)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 2

>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella vectensis GN=v1g172254 PE=3 SV=1

 Score =  255 bits (652), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 166/263 (63%), Gaps = 18/263 (6%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES-------------VTISTKQGDHLESSYALVCAG 48
           G++F + GG+I    +V  FK   ES             VT+ +     ++  Y + C G
Sbjct: 194 GDDFRKGGGDIFTGYEVTDFKCASESGKSQEKEAGLTHPVTVFSNNKQTIKCRYVITCGG 253

Query: 49  LQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMD 108
           L +D +A KSGC+ EP IVPFRG+YL+L P K HLV+GNIYPVPDPNFPFLGVHFTPRMD
Sbjct: 254 LYSDRLAEKSGCNREPRIVPFRGDYLVLKPEKCHLVKGNIYPVPDPNFPFLGVHFTPRMD 313

Query: 109 GSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSM 168
           GSVWLGPNAVLAF +EGY   D ++R+L   L + G  +L  KY  +G  E       + 
Sbjct: 314 GSVWLGPNAVLAFAREGYNLLDINLRDLADALAFRGLRQLMFKYFSFGVGEYYRGLNHAA 373

Query: 169 RVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPS 223
           +V +L++YI  + A D+  GPSGVRAQAL   G+LVDDFVF         R LH RNAPS
Sbjct: 374 QVKQLQKYIPSVTADDVVSGPSGVRAQALDRDGNLVDDFVFDGGVGEIGSRVLHVRNAPS 433

Query: 224 PAATSSLAIAKHILNELRREFKL 246
           PAATSSLAIA+ + ++    F L
Sbjct: 434 PAATSSLAIARMVADKAAERFTL 456

Nematostella vectensis (taxid: 45351)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9N4Z0|L2HDH_CAEEL L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=Y45G12B.3 PE=3 SV=2

 Score =  253 bits (647), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 9/255 (3%)

Query: 1   MGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHL---ESSYALVCAGLQADEMAL 56
            GE+F + GG+I  +  +E   +N +    I    G  L   E+   + CAGLQ+D +A 
Sbjct: 179 FGEDFEKRGGKIYTSYPLEKISDNHDPGYPIRVSSGPALAEFETKNLITCAGLQSDRVAA 238

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
            SGCS +P IVPFRGEYLLL P K+HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLGPN
Sbjct: 239 LSGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPN 298

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA+K+EGY +   S  +L  +L Y G  +L  K+  +G KE+    + + +V +L+++
Sbjct: 299 AVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGVWIAAQVKQLQRF 358

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTL-----HCRNAPSPAATSSLA 231
           I E++  D+ RGP+GVRAQA+ S+G+LVDDFVF S    L     H RNAPSPAATSSLA
Sbjct: 359 IPELKLSDVTRGPAGVRAQAMDSAGNLVDDFVFDSGTGKLSPLLMHVRNAPSPAATSSLA 418

Query: 232 IAKHILNELRREFKL 246
           IAK I +E    FKL
Sbjct: 419 IAKMITSEAINRFKL 433

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=L2HGDH PE=2 SV=1

 Score =  253 bits (645), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/260 (48%), Positives = 168/260 (64%), Gaps = 16/260 (6%)

Query: 3   EEFCELGGEIRLNQQVESFKENPES-----------VTISTKQGDHLESSYALVCAGLQA 51
           ++F E GG +  N +VE  +   ES           + I   +G+ +   Y + CAGL +
Sbjct: 204 KDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYS 263

Query: 52  DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
           D ++  SGC+  P IVPFRG+YL+L P K++LV+GNIYPVPD  FPFLGVHFTPRMDG++
Sbjct: 264 DRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGNI 323

Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
           WLGPNA+LAFK+EGYR  DFS R++   +   G  +L  +   YG  EM  + F S  V 
Sbjct: 324 WLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVK 383

Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
            L+++I EI   D+ RGP+GVRAQAL   G+L++DFVF         R LH RNAPSPAA
Sbjct: 384 HLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSPAA 443

Query: 227 TSSLAIAKHILNELRREFKL 246
           TSSLAI+  I +E+++ FKL
Sbjct: 444 TSSLAISGMIADEVQQRFKL 463

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=L2HGDH PE=1 SV=3

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 168/260 (64%), Gaps = 16/260 (6%)

Query: 3   EEFCELGGEIRLN---QQVESFKENPES--------VTISTKQGDHLESSYALVCAGLQA 51
           ++F E GG +  N   + +E  KE+P          + I   +G+ +   Y + CAGL +
Sbjct: 204 QDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYS 263

Query: 52  DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
           D ++  SGC+ +P IVPFRG+YLLL P K +LV+GNIYPVPD  FPFLGVHFTPRMDGS+
Sbjct: 264 DRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSI 323

Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
           WLGPNAVLAFK+EGYR  DFS  ++   +   G  +L  +   YG  EM  + F    V 
Sbjct: 324 WLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKLASQNFSYGVTEMYKACFLGATVK 383

Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
            L+++I EI   DI RGP+GVRAQAL   G+LV+DFVF +       R LH RNAPSPAA
Sbjct: 384 YLQKFIPEITISDILRGPAGVRAQALDRDGNLVEDFVFDAGVGDIGNRILHVRNAPSPAA 443

Query: 227 TSSLAIAKHILNELRREFKL 246
           TSS+AI+  I +E+++ F+L
Sbjct: 444 TSSIAISGMIADEVQQRFEL 463

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=L2hgdh PE=2 SV=1

 Score =  249 bits (635), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 167/260 (64%), Gaps = 16/260 (6%)

Query: 3   EEFCELGGEIRLNQQVESF---KENPES--------VTISTKQGDHLESSYALVCAGLQA 51
           ++F E GG I  + +V+     KEN           + +   +G  +   Y + CAGL +
Sbjct: 205 QDFQEAGGSILRDFEVKGIEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYS 264

Query: 52  DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
           D ++  SGC+ +P IVPFRG+YL+L P K +LV+GNIYPVPD  FPFLGVHFTPR+DG++
Sbjct: 265 DRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLDGTI 324

Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
           WLGPNAVLAFK+EGYR  DF  R++   +   GF  L  ++  YG  EM  + F S  V 
Sbjct: 325 WLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINLVFQHFSYGVNEMYKACFLSETVK 384

Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
            L+++I EI   D+ RGP+GVRAQAL   G+LV+DFVF       A R LH RNAPSPAA
Sbjct: 385 HLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDFVFDGGTGEIADRVLHVRNAPSPAA 444

Query: 227 TSSLAIAKHILNELRREFKL 246
           TSSLAI++ I  E ++ FKL
Sbjct: 445 TSSLAISRMIAEEAQQRFKL 464

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=l2hgdh PE=3 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 156/246 (63%), Gaps = 11/246 (4%)

Query: 11  EIRLNQQVESFKENPESVTISTKQGD---------HLESSYALVCAGLQADEMALKSGCS 61
           EI+LN   ++FK N     +    GD          + + Y++VC G+ +D +A  +  +
Sbjct: 196 EIKLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSIVCGGMNSDRIAKVAYGN 255

Query: 62  LEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF 121
            EP+IVPFRG +L   P  +HL++GN+YP+P+ +FPFLGVHFT R++G VWLGPNAVL+F
Sbjct: 256 DEPSIVPFRGSFLQFKPEFRHLIKGNVYPLPNASFPFLGVHFTKRINGEVWLGPNAVLSF 315

Query: 122 KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIE 181
            +EGY++ DF++ +    ++ PG ++L  K+ +YG  E+   +     +  LK Y+  I 
Sbjct: 316 DREGYKFTDFNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDFNKDHFIQLLKPYMPNIT 375

Query: 182 AGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRT--LHCRNAPSPAATSSLAIAKHILNE 239
              ++ G SGVR+QA+S SGDL++DF+F +      +H RN+PSPAATSSLAIA  I++ 
Sbjct: 376 VDMLEYGGSGVRSQAISKSGDLIEDFIFDTPSDVPIIHVRNSPSPAATSSLAIAIEIVDL 435

Query: 240 LRREFK 245
            +  FK
Sbjct: 436 AQNNFK 441

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12) GN=lhgO PE=1 SV=3

 Score =  204 bits (519), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 145/243 (59%), Gaps = 4/243 (1%)

Query: 1   MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60
           M + F   GGEI  N +V    E+   V I T+QG   E+S  + C+GL AD +    G 
Sbjct: 154 MAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLG- 212

Query: 61  SLEPA--IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAV 118
            LEP   I PFRGEY  L P    +V   IYP+PDP  PFLGVH T  +DGSV +GPNAV
Sbjct: 213 -LEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAV 271

Query: 119 LAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIE 178
           LAFK+EGYR RDFS  +    L   G  R+   + R G  EM  S   S  +  +++Y  
Sbjct: 272 LAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCP 331

Query: 179 EIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILN 238
            +   D+Q  P+GVRAQA+S  G L+DDF+F +  RT+H  NAPSPAATS++ I  HI++
Sbjct: 332 RLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVS 391

Query: 239 ELR 241
           +++
Sbjct: 392 KVQ 394

Oxidizes L-2-hydroxyglutarate, probably to recover alpha-ketoglutarate mistakenly reduced by other enzymes or formed during growth on propionate.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=L2HGDH PE=2 SV=1

 Score =  204 bits (518), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/260 (43%), Positives = 146/260 (56%), Gaps = 60/260 (23%)

Query: 3   EEFCELGGEIRLNQQVESFKENPES-----------VTISTKQGDHLESSYALVCAGLQA 51
           ++F + GG +  N +V+  +   ES           + I   +G+ +   Y + CAGL +
Sbjct: 204 QDFQDAGGSVLTNFEVKDIEMAKESLSRSIDGMQYPIVIKNIKGEEIRCQYVVTCAGLYS 263

Query: 52  DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
           D ++  SGCS +P IV FRG+YLLL P K +LV+GNIYPVPD  FPFLGVHFT RMDGS+
Sbjct: 264 DRISELSGCSPDPRIVSFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRMDGSI 323

Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
           WLGPNAVLAFK+EGYR  DFS  ++   +                               
Sbjct: 324 WLGPNAVLAFKREGYRPFDFSATDVMDII------------------------------- 352

Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
                        I RGP+GVRAQAL   G+LVDDFVF +       R LH RNAPSPAA
Sbjct: 353 -------------INRGPAGVRAQALDRDGNLVDDFVFDAGVGDIGNRILHVRNAPSPAA 399

Query: 227 TSSLAIAKHILNELRREFKL 246
           TSS+AI+  I +E+++ F+L
Sbjct: 400 TSSIAISGMIADEVQQRFEL 419

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9ZMY5|MQO_HELPJ Malate:quinone oxidoreductase OS=Helicobacter pylori (strain J99) GN=mqo PE=3 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 11  EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
           ++ LN +V+  ++  ++  + ++  + + + + LV AG  A  +A   G  L+   +P  
Sbjct: 186 QVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVA 245

Query: 71  GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 118
           G +  +      L+RG +Y V +P  PF  VH  P   + G   +GP A+
Sbjct: 246 GSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291

Catalyzes oxidation of malate to oxaloacetate in the citric acid cycle. Donates electrons to quinones of the electron transfer chain.

Helicobacter pylori (strain J99) (taxid: 85963)

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
321466639	462	hypothetical protein DAPPUDRAFT_305386 [	0.972	0.530	0.559	2e-79
195484296	455	GE12689 [Drosophila yakuba] gi|194176735	0.972	0.538	0.560	1e-77
24585081	455	CG10639 [Drosophila melanogaster] gi|729	0.972	0.538	0.560	2e-77
195344954	455	GM17047 [Drosophila sechellia] gi|195580	0.972	0.538	0.556	5e-77
194879897	455	GG21668 [Drosophila erecta] gi|190657511	0.972	0.538	0.556	1e-76
194759574	453	GF14644 [Drosophila ananassae] gi|190615	0.972	0.540	0.560	1e-76
195114986	455	GI17168 [Drosophila mojavensis] gi|19391	0.972	0.538	0.571	3e-76
119112468	439	AGAP007868-PA [Anopheles gambiae str. PE	0.972	0.558	0.535	5e-76
195387960	468	GJ17673 [Drosophila virilis] gi|19414911	0.972	0.523	0.568	6e-76
195035497	452	GH11599 [Drosophila grimshawi] gi|193905	0.972	0.542	0.559	8e-76

>gi|321466639|gb|EFX77633.1| hypothetical protein DAPPUDRAFT_305386 [Daphnia pulex]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/261 (55%), Positives = 184/261 (70%), Gaps = 16/261 (6%)

Query: 2   GEEFCELGGEIRLNQQVESFK-----------ENPESVTISTKQGDHLESSYALVCAGLQ 50
           GE+F  LGG+I LN +V+ FK            N + V ++   G  +   Y L C GLQ
Sbjct: 201 GEDFKALGGDIHLNFEVKDFKVAEESKVKALASNKKGVQVTASNGQSVRCKYVLTCGGLQ 260

Query: 51  ADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGS 110
           +D +A  SGCS EP IVPFRGEYLLLNP K HLV+GNIYPVPDP FPFLGVHFTPRMDGS
Sbjct: 261 SDRLAELSGCSREPRIVPFRGEYLLLNPKKTHLVKGNIYPVPDPRFPFLGVHFTPRMDGS 320

Query: 111 VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRV 170
           VWLGPNAVLA K+EGY W D ++R+LF +LRY GF +L +K+  +G +E++ S F S+ +
Sbjct: 321 VWLGPNAVLALKREGYSWGDINLRDLFDSLRYRGFQKLAVKHVAFGLQEIVRSAFISLSL 380

Query: 171 NELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFH----SAGR-TLHCRNAPSPA 225
            EL++YI E+++ DI RGP+GVRAQAL + G LV+DFVF       GR  +HCRN PSP 
Sbjct: 381 KELQKYIPEVQSSDITRGPAGVRAQALDADGSLVEDFVFDYGMGEIGRNVIHCRNTPSPG 440

Query: 226 ATSSLAIAKHILNELRREFKL 246
           ATSSLAIAK I ++  ++F L
Sbjct: 441 ATSSLAIAKMIADKAEKDFLL 461

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195484296|ref|XP_002090634.1| GE12689 [Drosophila yakuba] gi|194176735|gb|EDW90346.1| GE12689 [Drosophila yakuba]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/257 (56%), Positives = 178/257 (69%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           G++F + GG+I L+  V  F E  E     VTI   K G  + +   L C GLQ+D +A 
Sbjct: 197 GQDFKQCGGDIYLDFNVSKFSETKEGTDYPVTIHGAKSGQTVRTKNVLTCGGLQSDLLAE 256

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
           K+GC  +P IVPFRGEYLLL   KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct: 257 KTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 316

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  SWF ++++  L++Y
Sbjct: 317 AVLALKREGYTWGDINLVELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKALQKY 376

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DIQRGP+GVRAQA+   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 377 IPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGEGTGALAKRVLHCRNAPSPGATSS 436

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 437 LAIAKMIADKIETEFSI 453

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24585081|ref|NP_609923.2| CG10639 [Drosophila melanogaster] gi|7298510|gb|AAF53729.1| CG10639 [Drosophila melanogaster] gi|201065691|gb|ACH92255.1| FI05204p [Drosophila melanogaster]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/257 (56%), Positives = 178/257 (69%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           G++F + GG+I L+  V  F E  E     VTI   K G  + +   L C GLQ+D +A 
Sbjct: 197 GQDFKQCGGDIYLDFNVSKFTETKEGTDYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAE 256

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
           K+GC  +P IVPFRGEYLLL   KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct: 257 KTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 316

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  SWF ++++  L++Y
Sbjct: 317 AVLALKREGYTWGDINLFELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKALQKY 376

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DIQRGP+GVRAQA+   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 377 IPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGQGSGALAKRVLHCRNAPSPGATSS 436

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 437 LAIAKMIADKIENEFSI 453

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195344954|ref|XP_002039041.1| GM17047 [Drosophila sechellia] gi|195580020|ref|XP_002079854.1| GD21794 [Drosophila simulans] gi|194134171|gb|EDW55687.1| GM17047 [Drosophila sechellia] gi|194191863|gb|EDX05439.1| GD21794 [Drosophila simulans]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 143/257 (55%), Positives = 178/257 (69%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           G++F + GG+I L+  V  F E  E     VTI   + G  + +   L C GLQ+D +A 
Sbjct: 197 GQDFKQCGGDIYLDFNVSKFSETKEGTDYPVTIHGARPGQTVRTKNVLTCGGLQSDLLAE 256

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
           K+GC  +P IVPFRGEYLLL   KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct: 257 KTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 316

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  SWF ++++  L++Y
Sbjct: 317 AVLALKREGYTWGDINLFELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKALQKY 376

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DIQRGP+GVRAQA+   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 377 IPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGQGSGALAKRVLHCRNAPSPGATSS 436

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 437 LAIAKMIADKIENEFSI 453

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194879897|ref|XP_001974324.1| GG21668 [Drosophila erecta] gi|190657511|gb|EDV54724.1| GG21668 [Drosophila erecta]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/257 (55%), Positives = 177/257 (68%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           G++F   GG+I L+  V  F E  E     VTI   + G  + +   L C GLQ+D +A 
Sbjct: 197 GQDFKRSGGDIYLDFNVSKFSETKEGTDYPVTIHGARSGQTVRTKNVLTCGGLQSDLLAE 256

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
           K+GC  +P IVPFRGEYLLL   KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct: 257 KTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 316

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  SWF ++++  L++Y
Sbjct: 317 AVLALKREGYTWGDINLIELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKALQKY 376

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DIQRGP+GVRAQA+   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 377 IPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGEGSGALAKRVLHCRNAPSPGATSS 436

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 437 LAIAKMIADKIETEFSI 453

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759574|ref|XP_001962022.1| GF14644 [Drosophila ananassae] gi|190615719|gb|EDV31243.1| GF14644 [Drosophila ananassae]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/257 (56%), Positives = 175/257 (68%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           GE+    GG I L+  V  F E  E     VTI   K G  + +   L C GLQ+D +A 
Sbjct: 194 GEDIKRSGGHIYLDYNVSKFSETKEGTEYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAE 253

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
           K+GC  +P IVPFRGEYLLL+  KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct: 254 KTGCPRDPRIVPFRGEYLLLSKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 313

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ EL   LRYPGF ++  KY  +G  EM  SWF +++V  L++Y
Sbjct: 314 AVLALKREGYTWGDINILELLDALRYPGFVKMASKYVGFGLSEMSKSWFINLQVKALQKY 373

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DIQRGP+GVRAQA+   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 374 IPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGEGSGALAKRVLHCRNAPSPGATSS 433

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 434 LAIAKMIADKIENEFSI 450

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114986|ref|XP_002002048.1| GI17168 [Drosophila mojavensis] gi|193912623|gb|EDW11490.1| GI17168 [Drosophila mojavensis]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 176/257 (68%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           GE+F   GG+I LN  V  F E  E     VTI S K G  + +   L C GLQ+D +A 
Sbjct: 195 GEDFKRAGGDIYLNFNVTKFTETKEGSDYPVTIHSGKDGRQVRTKNVLTCGGLQSDLLAE 254

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
            +GC   P IVPFRGEYLLL+  KQH+VRGNIYPVPDP FPFLGVHFTPRMDG +WLGPN
Sbjct: 255 LTGCPRAPRIVPFRGEYLLLSKEKQHMVRGNIYPVPDPRFPFLGVHFTPRMDGKIWLGPN 314

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  S F +++V  L++Y
Sbjct: 315 AVLAMKREGYTWGDINLLELFDALRYPGFLKMASKYIGFGFSEMAKSAFINLQVKALQKY 374

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DI+RGP+GVRAQAL  SG+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 375 IPDITEYDIERGPAGVRAQALDLSGNLVDDFVFDRGEGSGALAKRVLHCRNAPSPGATSS 434

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 435 LAIAKMIADKIETEFAI 451

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112468|ref|XP_317624.2| AGAP007868-PA [Anopheles gambiae str. PEST] gi|116123367|gb|EAA12921.2| AGAP007868-PA [Anopheles gambiae str. PEST]

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 137/256 (53%), Positives = 182/256 (71%), Gaps = 11/256 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTISTKQGDHLESSYALVCAGLQADEMALK 57
           G +F   GG++ +N +V  F E P++    + + +++GD + + + L C GLQ+D++A  
Sbjct: 182 GRDFKAAGGDVYINFKVAKFSEAPDNLDYPIVVRSEKGDEIRARHILTCGGLQSDKIAEM 241

Query: 58  SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNA 117
           +GCS  P IVPFRGEYLLLNP K H+VRGNIYPVPDP FPFLGVHFTPRMDGSVWLGPNA
Sbjct: 242 TGCSAVPKIVPFRGEYLLLNPDKCHMVRGNIYPVPDPRFPFLGVHFTPRMDGSVWLGPNA 301

Query: 118 VLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 177
           VLAF++EGY+W D +V EL   LR+PGF ++  K+   G  E+  S    ++V EL+++I
Sbjct: 302 VLAFRREGYKWSDINVPELIDALRFPGFIKMASKFVGAGMMEIARSALIPLQVRELQKFI 361

Query: 178 EEIEAGDIQRGPSGVRAQALSSSGDLVDDFVF-HSAGRT------LHCRNAPSPAATSSL 230
            +I   D+ RGP+GVRAQAL + G+LVDDFVF H  G +      LHCRNAPSP ATSSL
Sbjct: 362 PDIHEYDVARGPAGVRAQALDNDGNLVDDFVFDHGTGESVLSKNILHCRNAPSPGATSSL 421

Query: 231 AIAKHILNELRREFKL 246
           +IAK I +++  EF +
Sbjct: 422 SIAKMIADKIEHEFHI 437

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195387960|ref|XP_002052660.1| GJ17673 [Drosophila virilis] gi|194149117|gb|EDW64815.1| GJ17673 [Drosophila virilis]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 177/257 (68%), Gaps = 12/257 (4%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
           GE+F   GG+I L+ +V  F E PE     VTI   K G  + +   L C GLQ+D +A 
Sbjct: 208 GEDFKCAGGDIYLDFKVSKFSETPEGTDYPVTIHGAKPGQTVSTKNVLTCGGLQSDLLAE 267

Query: 57  KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
            +GC   P IVPFRGEYLLL+  KQH+VRGNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct: 268 LTGCPRSPRIVPFRGEYLLLSKQKQHMVRGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 327

Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
           AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  S F +++V  L++Y
Sbjct: 328 AVLALKREGYTWGDINLFELFDALRYPGFLKMASKYIGFGFSEMAKSAFINLQVKALQKY 387

Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
           I +I   DI+RGP+GVRAQAL   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct: 388 IPDINEYDIERGPAGVRAQALDLQGNLVDDFVFDRGEGSGPLAKRVLHCRNAPSPGATSS 447

Query: 230 LAIAKHILNELRREFKL 246
           LAIAK I +++  EF +
Sbjct: 448 LAIAKMIADKIETEFAI 464

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035497|ref|XP_001989214.1| GH11599 [Drosophila grimshawi] gi|193905214|gb|EDW04081.1| GH11599 [Drosophila grimshawi]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 179/259 (69%), Gaps = 14/259 (5%)

Query: 2   GEEFCELGGEIRLNQQVESFKENPES------VTI-STKQGDHLESSYALVCAGLQADEM 54
           GE+F   GG+I L+ QV+ F E+         VTI   K G  + +   L C GLQ+D +
Sbjct: 190 GEDFKRAGGDIYLDFQVKKFTESASDGSADYPVTIHGGKSGQKVRTRNVLTCGGLQSDTL 249

Query: 55  ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
           A  +GC  +P IVPFRGEYLLL+  KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLG
Sbjct: 250 AELTGCPRDPRIVPFRGEYLLLSKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLG 309

Query: 115 PNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK 174
           PNAVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  S F +++V  L+
Sbjct: 310 PNAVLALKREGYTWGDINLFELFDALRYPGFLKMASKYIGFGFSEMAKSAFINLQVKALQ 369

Query: 175 QYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAAT 227
           +YI +I   DIQRGP+GVRAQAL  SG+LVDDFVF         A + LHCRNAPSP AT
Sbjct: 370 KYIPDINEYDIQRGPAGVRAQALDLSGNLVDDFVFDRGEGSGALAKQVLHCRNAPSPGAT 429

Query: 228 SSLAIAKHILNELRREFKL 246
           SSLAIAK I +++  EF +
Sbjct: 430 SSLAIAKMIADKIETEFSI 448

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
FB|FBgn0032729	455	CG10639 [Drosophila melanogast	0.972	0.538	0.560	3.2e-72
UNIPROTKB|F1NBV3	452	L2HGDH "Uncharacterized protei	0.968	0.539	0.523	8.5e-65
ZFIN|ZDB-GENE-090319-6	452	l2hgdh "L-2-hydroxyglutarate d	0.972	0.542	0.501	4.2e-63
WB|WBGene00021564	433	Y45G12B.3 [Caenorhabditis eleg	0.972	0.565	0.515	5.4e-63
UNIPROTKB|F1SHX9	463	L2HGDH "Uncharacterized protei	0.968	0.526	0.5	2.1e-61
RGD|1306250	463	L2hgdh "L-2-hydroxyglutarate d	0.968	0.526	0.492	1.2e-60
UNIPROTKB|A7MBI3	463	L2HGDH "L-2-hydroxyglutarate d	0.968	0.526	0.484	2.4e-60
UNIPROTKB|E2RRS4	674	L2HGDH "Uncharacterized protei	0.968	0.362	0.496	5e-60
MGI|MGI:2384968	464	L2hgdh "L-2-hydroxyglutarate d	0.968	0.525	0.488	5e-60
UNIPROTKB|Q9H9P8	463	L2HGDH "L-2-hydroxyglutarate d	0.968	0.526	0.492	1.7e-59

FB|FBgn0032729 CG10639 [Drosophila melanogaster (taxid:7227)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 144/257 (56%), Positives = 178/257 (69%)

Query:     2 GEEFCELGGEIRLNQQVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMAL 56
             G++F + GG+I L+  V  F E  E     VTI   K G  + +   L C GLQ+D +A 
Sbjct:   197 GQDFKQCGGDIYLDFNVSKFTETKEGTDYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAE 256

Query:    57 KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
             K+GC  +P IVPFRGEYLLL   KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPN
Sbjct:   257 KTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPN 316

Query:   117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
             AVLA K+EGY W D ++ ELF  LRYPGF ++  KY  +G  EM  SWF ++++  L++Y
Sbjct:   317 AVLALKREGYTWGDINLFELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKALQKY 376

Query:   177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-------AGRTLHCRNAPSPAATSS 229
             I +I   DIQRGP+GVRAQA+   G+LVDDFVF         A R LHCRNAPSP ATSS
Sbjct:   377 IPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGQGSGALAKRVLHCRNAPSPGATSS 436

Query:   230 LAIAKHILNELRREFKL 246
             LAIAK I +++  EF +
Sbjct:   437 LAIAKMIADKIENEFSI 453

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1NBV3 L2HGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 136/260 (52%), Positives = 174/260 (66%)

Query:     3 EEFCELGGEIRLNQQV---ESFKENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             E+F E GG I  + +V   E  KE+           V + + +G+ +   + + CAGL +
Sbjct:   193 EDFQEAGGTILTDFEVTDMEMAKESSSGSEDGLQYPVVVRSSKGEEIYCRHIVTCAGLYS 252

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGCS EP IVPFRG+YL+L P K ++V+GNIYPVP+P FPFLG HFTPRMDGSV
Sbjct:   253 DRLSEISGCSPEPRIVPFRGDYLVLKPEKCYMVKGNIYPVPNPRFPFLGFHFTPRMDGSV 312

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNAVLAFK+EGY+  DFS  +    + Y G W+L LK   YG  EM  + F S +V 
Sbjct:   313 WLGPNAVLAFKREGYKLFDFSATDFLDAVLYSGLWKLVLKNLSYGLSEMYRACFLSAQVK 372

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-----GRTLHCRNAPSPAA 226
             EL+++I E+   D+ RGPSGVRAQAL S G+LVDDFVF         R LH RNAPSPAA
Sbjct:   373 ELQKFIPEVTVNDVLRGPSGVRAQALDSDGNLVDDFVFDGGTGDLGSRILHVRNAPSPAA 432

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSSLAIA+ I +E++R F+L
Sbjct:   433 TSSLAIAEMIADEVKRRFEL 452

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

ZFIN|ZDB-GENE-090319-6 l2hgdh "L-2-hydroxyglutarate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 131/261 (50%), Positives = 169/261 (64%)

Query:     2 GEEFCELGGEIRLNQQVESFKENPES-----------VTISTKQGDHLESSYALVCAGLQ 50
             G++F E GG +  + +        ES           + I + QG  +  ++ L C GL 
Sbjct:   192 GKDFQEAGGTVMTDYEASDMSVAAESQADSTNGQKYPIIIRSSQGKEVRCAFVLACGGLY 251

Query:    51 ADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGS 110
             +D ++  SGCS EP IVPFRG+YL+L P K +LVRGNIYPVP+P FPFLGVHFTPRMDGS
Sbjct:   252 SDRLSEMSGCSSEPRIVPFRGDYLVLKPEKNYLVRGNIYPVPNPRFPFLGVHFTPRMDGS 311

Query:   111 VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRV 170
             VWLGPNAVLAFK+EGY+  DF  ++  + L + G  RL +K   YG  E+    FP  +V
Sbjct:   312 VWLGPNAVLAFKREGYKLFDFDAQDFVNALSFSGLQRLVMKNVVYGVGEIYRGVFPGAQV 371

Query:   171 NELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-----GRTLHCRNAPSPA 225
               L+++I E+   D+ RGPSGVRAQAL + G+LVDDFVF         R LH RNAPSPA
Sbjct:   372 KILQKFIPELSPSDVIRGPSGVRAQALDAEGNLVDDFVFDGGKGELGSRVLHVRNAPSPA 431

Query:   226 ATSSLAIAKHILNELRREFKL 246
             A+SSLAIA+ I +EL + F+L
Sbjct:   432 ASSSLAIAEMIADELEKRFQL 452

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

WB|WBGene00021564 Y45G12B.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 131/254 (51%), Positives = 173/254 (68%)

Query:     2 GEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHL---ESSYALVCAGLQADEMALK 57
             GE+F + GG+I  +  +E   +N +    I    G  L   E+   + CAGLQ+D +A  
Sbjct:   180 GEDFEKRGGKIYTSYPLEKISDNHDPGYPIRVSSGPALAEFETKNLITCAGLQSDRVAAL 239

Query:    58 SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNA 117
             SGCS +P IVPFRGEYLLL P K+HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLGPNA
Sbjct:   240 SGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNA 299

Query:   118 VLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 177
             VLA+K+EGY +   S  +L  +L Y G  +L  K+  +G KE+    + + +V +L+++I
Sbjct:   300 VLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGVWIAAQVKQLQRFI 359

Query:   178 EEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-GRT----LHCRNAPSPAATSSLAI 232
              E++  D+ RGP+GVRAQA+ S+G+LVDDFVF S  G+     +H RNAPSPAATSSLAI
Sbjct:   360 PELKLSDVTRGPAGVRAQAMDSAGNLVDDFVFDSGTGKLSPLLMHVRNAPSPAATSSLAI 419

Query:   233 AKHILNELRREFKL 246
             AK I +E    FKL
Sbjct:   420 AKMITSEAINRFKL 433

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1SHX9 L2HGDH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 130/260 (50%), Positives = 169/260 (65%)

Query:     3 EEFCELGGEIRLNQQVESF---KENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             ++F E GG +  + +VE     KE+P          + I   +G+ +   Y + CAGL +
Sbjct:   204 QDFQEAGGSVLTSFEVEDIEMAKESPSRHKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYS 263

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGC+  P IVPFRG+YLLL P K++LV+GNIYPVPD  FPFLGVHFTPRMDGS+
Sbjct:   264 DRISELSGCNPNPRIVPFRGDYLLLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGSI 323

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNAVLAFK+EGYR  DFS R++   +   G  +L  +   YG  EM  + F S  V 
Sbjct:   324 WLGPNAVLAFKREGYRPFDFSARDIMDIILKSGLMKLVFQNFSYGVNEMYKACFLSATVK 383

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-----GRTLHCRNAPSPAA 226
              L+++I EI   DI RGP+GVRAQAL   G+L++DFVF         R LH RNAPSPAA
Sbjct:   384 HLQKFIPEITISDILRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSPAA 443

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSSLAI+  I +E+++ FKL
Sbjct:   444 TSSLAISGMIADEVQQRFKL 463

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1306250 L2hgdh "L-2-hydroxyglutarate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 128/260 (49%), Positives = 172/260 (66%)

Query:     3 EEFCELGGEIRLNQQVESF---KENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             ++F E GG I  + +V+     KE+P          + +   +G  ++  Y + CAGL +
Sbjct:   204 QDFQEAGGSILKDFEVKDIGIAKEDPPRSKDGMKYPIAVKNSKGKEIQCRYVVTCAGLYS 263

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGC+ +P IVPFRG+YL+L P K +LV+GNIYPVPD   PFLGVHFTPR+DGS+
Sbjct:   264 DRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIYPVPDSRLPFLGVHFTPRLDGSI 323

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNAVLAFK+EGYR  DF+ R++   +   GF +L  +   YG+ E+  + F S  V 
Sbjct:   324 WLGPNAVLAFKREGYRPFDFNARDIMEVILKSGFIKLVFQNFSYGASEIYKACFLSETVK 383

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-AG----RTLHCRNAPSPAA 226
              L+++I EI   D+ RGP+GVRAQAL   G+LVDDFVF   AG    R LH RNAPSPAA
Sbjct:   384 HLQKFIPEITTNDVLRGPAGVRAQALDRDGNLVDDFVFDGGAGEIGDRILHVRNAPSPAA 443

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSSLAI++ I  E+++ FKL
Sbjct:   444 TSSLAISRMIAEEVQQRFKL 463

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0044267 "cellular protein metabolic process" evidence=IEA;ISO

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA;ISO

UNIPROTKB|A7MBI3 L2HGDH "L-2-hydroxyglutarate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 126/260 (48%), Positives = 169/260 (65%)

Query:     3 EEFCELGGEIRLNQQVESF---KENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             ++F E GG +  N +VE     +E+P          + I   +G+ +   Y + CAGL +
Sbjct:   204 KDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYS 263

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGC+  P IVPFRG+YL+L P K++LV+GNIYPVPD  FPFLGVHFTPRMDG++
Sbjct:   264 DRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGNI 323

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNA+LAFK+EGYR  DFS R++   +   G  +L  +   YG  EM  + F S  V 
Sbjct:   324 WLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVK 383

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-----GRTLHCRNAPSPAA 226
              L+++I EI   D+ RGP+GVRAQAL   G+L++DFVF         R LH RNAPSPAA
Sbjct:   384 HLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSPAA 443

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSSLAI+  I +E+++ FKL
Sbjct:   444 TSSLAISGMIADEVQQRFKL 463

GO:0005739 "mitochondrion" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2RRS4 L2HGDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 129/260 (49%), Positives = 169/260 (65%)

Query:     3 EEFCELGGEIRLN---QQVESFKENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             ++F E GG +  N   + +E  KE P          + I   +G+ ++  Y + CAGL +
Sbjct:   415 QDFQEAGGFVLTNFEVKDIEMAKEIPSRSKDEMKYPIIIRNTKGEEVQCQYVVTCAGLYS 474

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGC+ +P IVPFRG+YLLL P K +LV+GNIYPVPD  FPFLGVHFTPRMDGS+
Sbjct:   475 DRISELSGCNPDPQIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSI 534

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNAVLAFK+EGY+  DF+ R++   +   G  +L  +   YG  EM  + F S  V 
Sbjct:   535 WLGPNAVLAFKREGYKPFDFNARDVMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVK 594

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-----GRTLHCRNAPSPAA 226
              L+++I EI   DI RGP+GVRAQAL   G+LV+DFVF         R LH RNAPSPAA
Sbjct:   595 HLQKFIPEITVSDILRGPAGVRAQALDRDGNLVEDFVFDGGVGDIGNRILHVRNAPSPAA 654

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSSLAI+  I +E+++ FKL
Sbjct:   655 TSSLAISGMIADEVQQRFKL 674

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2384968 L2hgdh "L-2-hydroxyglutarate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 127/260 (48%), Positives = 167/260 (64%)

Query:     3 EEFCELGGEIRLNQQVESF---KENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             ++F E GG I  + +V+     KEN           + +   +G  +   Y + CAGL +
Sbjct:   205 QDFQEAGGSILRDFEVKGIEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYS 264

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGC+ +P IVPFRG+YL+L P K +LV+GNIYPVPD  FPFLGVHFTPR+DG++
Sbjct:   265 DRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLDGTI 324

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNAVLAFK+EGYR  DF  R++   +   GF  L  ++  YG  EM  + F S  V 
Sbjct:   325 WLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINLVFQHFSYGVNEMYKACFLSETVK 384

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
              L+++I EI   D+ RGP+GVRAQAL   G+LV+DFVF       A R LH RNAPSPAA
Sbjct:   385 HLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDFVFDGGTGEIADRVLHVRNAPSPAA 444

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSSLAI++ I  E ++ FKL
Sbjct:   445 TSSLAISRMIAEEAQQRFKL 464

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0016021 "integral to membrane" evidence=ISO;ISA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=ISO

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=ISO;ISA

GO:0055114 "oxidation-reduction process" evidence=ISO;ISA

UNIPROTKB|Q9H9P8 L2HGDH "L-2-hydroxyglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 128/260 (49%), Positives = 168/260 (64%)

Query:     3 EEFCELGGEIRLNQQV---ESFKENPES--------VTISTKQGDHLESSYALVCAGLQA 51
             ++F E GG +  N +V   E  KE+P          + I   +G+ +   Y + CAGL +
Sbjct:   204 QDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYS 263

Query:    52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
             D ++  SGC+ +P IVPFRG+YLLL P K +LV+GNIYPVPD  FPFLGVHFTPRMDGS+
Sbjct:   264 DRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSI 323

Query:   112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
             WLGPNAVLAFK+EGYR  DFS  ++   +   G  +L  +   YG  EM  + F    V 
Sbjct:   324 WLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKLASQNFSYGVTEMYKACFLGATVK 383

Query:   172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-----GRTLHCRNAPSPAA 226
              L+++I EI   DI RGP+GVRAQAL   G+LV+DFVF +       R LH RNAPSPAA
Sbjct:   384 YLQKFIPEITISDILRGPAGVRAQALDRDGNLVEDFVFDAGVGDIGNRILHVRNAPSPAA 443

Query:   227 TSSLAIAKHILNELRREFKL 246
             TSS+AI+  I +E+++ F+L
Sbjct:   444 TSSIAISGMIADEVQQRFEL 463

GO:0016021 "integral to membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0031305 "integral to mitochondrial inner membrane" evidence=NAS

GO:0044267 "cellular protein metabolic process" evidence=IDA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006103 "2-oxoglutarate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N4Z0	L2HDH_CAEEL	1, ., 1, ., 9, 9, ., 2	0.5137	0.9761	0.5681	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	252
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	1e-121
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	2e-56
PTZ00383	497	PTZ00383, PTZ00383, malate:quinone oxidoreductase;	1e-04

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score =  350 bits (901), Expect = e-121
 Identities = 122/240 (50%), Positives = 155/240 (64%), Gaps = 1/240 (0%)

Query: 1   MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60
           M E     GGEIRL  +V +  E+   V + T QG+  E+   + CAGL +D +A  +G 
Sbjct: 155 MAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGE-YEARTLINCAGLMSDRLAKMAGL 213

Query: 61  SLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA 120
             +  IVPFRGEY  L P K  LV   IYPVPDP FPFLGVH T  +DGSV +GPNAVLA
Sbjct: 214 EPDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLA 273

Query: 121 FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEI 180
           FK+EGYR RDFS+R+L   L YPGFW+L  K+ R G  EM  S   S  +  +++Y   +
Sbjct: 274 FKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSL 333

Query: 181 EAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNEL 240
              D+Q  P+GVRAQA+S  G LVDDF+F    R+LH  NAPSPAATSSL I +HI++++
Sbjct: 334 TLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393

Length = 393

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score =  185 bits (473), Expect = 2e-56
 Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 1   MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGD-HLESSYALVCAGLQADEMALKS 58
           + EE    G E+RLN +V   ++  + V  ++T  G+  LE+ + +  AGL AD +A  +
Sbjct: 159 LAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA 218

Query: 59  GCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAV 118
           G   +  I P RGEYL+L+   + L+R  IYPVP+P  P LGVH TP +DGS+  GPNA+
Sbjct: 219 GIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNAL 278

Query: 119 LA-FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 177
            +    +G R  DF + +        G   LG+K     +   I       R+  L   I
Sbjct: 279 DSPKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFII 338

Query: 178 EEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHIL 237
            E +  D     +G+R+Q L++   +    +     R++     PSP A+S++ I   +L
Sbjct: 339 PEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTERSIAVLLGPSPGASSAVPIMLRLL 398

Query: 238 -------NELRREFKLDELSSR 252
                       E KL E+   
Sbjct: 399 EKVFEERARSEWEPKLKEIVPS 420

Length = 429

>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 11  EIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF 69
            I LN +V + + + +S+  I T +G+ + + + +V A   +   A K G  LE + +P 
Sbjct: 233 SINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYSLLFAQKMGYGLEYSCLPV 291

Query: 70  RGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNA 117
            G +        +++ G +Y V +P  PF  VH  P     G    GP A
Sbjct: 292 AGSFYF----SGNILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTA 337

Length = 497

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PRK11728	393	hydroxyglutarate oxidase; Provisional	100.0
KOG2665|consensus	453		99.96
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.95
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.94
PRK05257	494	malate:quinone oxidoreductase; Validated	99.94
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.94
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	99.93
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	99.92
COG0579	429	Predicted dehydrogenase [General function predicti	99.92
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.92
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	99.92
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.92
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.91
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.91
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.91
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.9
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.9
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.9
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.9
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.89
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.89
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.89
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.88
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.88
KOG2844|consensus	856		99.87
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.86
KOG2853|consensus	509		99.81
KOG0042|consensus	680		99.73
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.71
KOG3923|consensus	342		99.65
KOG2820|consensus	399		99.64
KOG2852|consensus	380		99.08
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.46
PRK10157	428	putative oxidoreductase FixC; Provisional	98.45
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.3
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.26
PLN02697	529	lycopene epsilon cyclase	98.25
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.22
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.18
PRK06185	407	hypothetical protein; Provisional	98.13
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.13
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.08
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.06
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.99
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.98
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.95
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.91
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.87
PRK10015	429	oxidoreductase; Provisional	97.86
COG2081	408	Predicted flavoproteins [General function predicti	97.79
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.78
PRK06834	488	hypothetical protein; Provisional	97.73
PLN02463	447	lycopene beta cyclase	97.71
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.71
PRK07233	434	hypothetical protein; Provisional	97.7
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.69
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.68
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.65
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.5
PRK09126	392	hypothetical protein; Provisional	97.49
PRK08244	493	hypothetical protein; Provisional	97.49
PRK07190	487	hypothetical protein; Provisional	97.42
PRK06847	375	hypothetical protein; Provisional	97.37
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.36
PRK06184	502	hypothetical protein; Provisional	97.3
PRK08163	396	salicylate hydroxylase; Provisional	97.1
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.1
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.07
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.04
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.98
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.9
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.87
PRK07588	391	hypothetical protein; Provisional	96.77
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.74
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.71
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.68
PRK08013	400	oxidoreductase; Provisional	96.64
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.58
PRK08274	466	tricarballylate dehydrogenase; Validated	96.53
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.49
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.48
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.46
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.45
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	96.41
PRK09897	534	hypothetical protein; Provisional	96.38
PRK06996	398	hypothetical protein; Provisional	96.32
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.28
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.25
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.14
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.14
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.12
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.09
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.08
PLN02612	567	phytoene desaturase	96.08
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.07
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.07
PRK06126	545	hypothetical protein; Provisional	96.06
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.02
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	96.0
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	95.95
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.92
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.9
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.86
PRK08401	466	L-aspartate oxidase; Provisional	95.84
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	95.82
PRK05868	372	hypothetical protein; Validated	95.81
PRK14727	479	putative mercuric reductase; Provisional	95.81
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	95.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.73
PRK07121	492	hypothetical protein; Validated	95.72
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	95.71
PRK12842	574	putative succinate dehydrogenase; Reviewed	95.68
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.66
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.65
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.6
PLN02268	435	probable polyamine oxidase	95.59
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	95.56
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.55
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.53
PRK11445	351	putative oxidoreductase; Provisional	95.52
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.51
KOG0404|consensus	322		95.5
PLN02676	487	polyamine oxidase	95.5
PRK06116	450	glutathione reductase; Validated	95.47
PRK12839	572	hypothetical protein; Provisional	95.46
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.44
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.44
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	95.39
PRK14694	468	putative mercuric reductase; Provisional	95.37
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	95.35
PRK12416	463	protoporphyrinogen oxidase; Provisional	95.34
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	95.34
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.31
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	95.22
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.21
PRK06175	433	L-aspartate oxidase; Provisional	95.19
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.18
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	95.16
KOG4254|consensus	561		95.13
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	95.07
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.99
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.98
PRK07804	541	L-aspartate oxidase; Provisional	94.92
PRK06753	373	hypothetical protein; Provisional	94.9
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.84
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.84
PRK07236	386	hypothetical protein; Provisional	94.78
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	94.75
PLN02507	499	glutathione reductase	94.75
PRK07045	388	putative monooxygenase; Reviewed	94.75
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	94.65
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	94.65
PRK11883	451	protoporphyrinogen oxidase; Reviewed	94.63
PRK08275	554	putative oxidoreductase; Provisional	94.61
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.6
PRK13748	561	putative mercuric reductase; Provisional	94.56
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	94.56
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	94.46
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	94.42
PRK02106	560	choline dehydrogenase; Validated	94.39
PRK07512	513	L-aspartate oxidase; Provisional	94.36
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.34
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	94.29
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.25
PRK08071	510	L-aspartate oxidase; Provisional	94.22
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.22
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	94.21
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.19
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	94.18
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.13
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.0
PRK06475	400	salicylate hydroxylase; Provisional	93.86
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	93.86
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	93.83
PLN02487	569	zeta-carotene desaturase	93.79
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	93.74
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.66
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.6
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	93.6
PRK10262	321	thioredoxin reductase; Provisional	93.51
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	93.31
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	93.24
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.15
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.12
PLN02568	539	polyamine oxidase	93.1
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.07
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	93.07
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	93.04
PRK07846	451	mycothione reductase; Reviewed	93.04
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.96
PRK07538	413	hypothetical protein; Provisional	92.92
PRK06370	463	mercuric reductase; Validated	92.84
PLN02529	738	lysine-specific histone demethylase 1	92.76
PRK07208	479	hypothetical protein; Provisional	92.76
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	92.65
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	92.64
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	92.59
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	92.56
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	92.47
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	92.39
PTZ00052	499	thioredoxin reductase; Provisional	92.38
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	92.33
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.31
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.26
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	92.24
TIGR02053	463	MerA mercuric reductase. This model represents the	92.24
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	92.1
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	92.06
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	92.06
PRK13977	576	myosin-cross-reactive antigen; Provisional	92.03
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	91.89
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.88
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	91.73
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	91.63
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	91.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	91.5
PRK14989	847	nitrite reductase subunit NirD; Provisional	91.5
PRK13512	438	coenzyme A disulfide reductase; Provisional	91.39
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	91.12
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	91.08
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	91.02
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.97
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	90.78
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	90.68
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	90.66
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	90.56
PLN03000	881	amine oxidase	90.5
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	90.48
PRK07395	553	L-aspartate oxidase; Provisional	90.42
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	90.36
PLN02576	496	protoporphyrinogen oxidase	90.31
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	90.21
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	89.91
PLN02661	357	Putative thiazole synthesis	88.88
PRK07845	466	flavoprotein disulfide reductase; Reviewed	88.88
PLN02815	594	L-aspartate oxidase	88.67
PRK09077	536	L-aspartate oxidase; Provisional	88.53
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	88.08
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	87.9
PRK13512	438	coenzyme A disulfide reductase; Provisional	87.88
KOG1346|consensus	659		87.85
PTZ00058	561	glutathione reductase; Provisional	87.59
PLN02976	1713	amine oxidase	87.45
PLN02546	558	glutathione reductase	87.33
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	87.03
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	86.81
PLN02785	587	Protein HOTHEAD	86.71
PLN02328	808	lysine-specific histone demethylase 1 homolog	86.52
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	86.29
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	86.03
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	85.99
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	85.96
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	85.55
PRK08294	634	phenol 2-monooxygenase; Provisional	85.26
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	85.2
KOG1399|consensus	448		84.88
PLN02985	514	squalene monooxygenase	84.7
PRK12770	352	putative glutamate synthase subunit beta; Provisio	83.39
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	82.69
PRK10262	321	thioredoxin reductase; Provisional	82.6
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	82.36
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	81.92
KOG2404|consensus	477		81.37
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	81.17
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	80.76
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	80.15

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=100.00  E-value=4.6e-34  Score=254.19  Aligned_cols=238  Identities=51%  Similarity=0.809  Sum_probs=201.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.++++|++++++++|++++.++++|.|.|++| ++.|+.||+|+|.|+..+++++|+..++++.|+||+++.+.+...
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~  234 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKN  234 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccc
Confidence            4667889999999999999998888888999888 899999999999999999999997556889999999999975433


Q ss_pred             ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHHH
Q psy3952          82 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMI  161 (252)
Q Consensus        82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (252)
                      ..++..+|++|++..++.++|++|+.+|++++|+++.....+++|.....+..++.+++...++|..+.+++.+.++.+.
T Consensus       235 ~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (393)
T PRK11728        235 QLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMK  314 (393)
T ss_pred             cccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            45677889999877667889999999999999997765544456654323344444555556667666667888888887


Q ss_pred             hhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecCCeEEEeccCCccccchHHHHHHHHHHH
Q psy3952         162 MSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNEL  240 (252)
Q Consensus       162 ~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~~~~~~~G~~~~G~t~a~~~g~~va~~i  240 (252)
                      .+.+++.+++.+++++|.|+..++.+.|+|+||+.++||+.|..||+|...++++++.|..|+|+|.||++|+.|++++
T Consensus       315 ~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~~  393 (393)
T PRK11728        315 NSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV  393 (393)
T ss_pred             hhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence            7788889999999999999999999999999997667999999999998889999999999999999999999999863

>KOG2665|consensus

Probab=99.96  E-value=1.9e-28  Score=203.13  Aligned_cols=240  Identities=55%  Similarity=0.925  Sum_probs=214.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-----EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-----VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL   76 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-----~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~   76 (252)
                      .+..+..|.++.++-++.++......     .+|....+++++++.||-|||..++.+++..|...+..+.|.+|.++.+
T Consensus       203 ~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll  282 (453)
T KOG2665|consen  203 GEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLL  282 (453)
T ss_pred             HHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhc
Confidence            56678899999999999999876542     3455566778999999999999999999999987788899999999999


Q ss_pred             CCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhh
Q psy3952          77 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  156 (252)
Q Consensus        77 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (252)
                      .++....+++.+||+|++++++.|+|+.|+.+|.+++|+++.....+++|.+.++++.++.+.+.++++-++.++++...
T Consensus       283 ~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~yg  362 (453)
T KOG2665|consen  283 KPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYG  362 (453)
T ss_pred             ChHHhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcc
Confidence            87666778899999999999999999999999999999999888888899888888888888888999999999999999


Q ss_pred             hHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe-----cCCeEEEeccCCccccchHH
Q psy3952         157 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAATSSLA  231 (252)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~-----~~~~~~~~G~~~~G~t~a~~  231 (252)
                      +..+.+.+|...-++++++|+|.|++.+|.+..+|+|.+..+-||..++||+++.     .|++.++.+..|+|.|.|.+
T Consensus       363 v~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlA  442 (453)
T KOG2665|consen  363 VNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLA  442 (453)
T ss_pred             cchHhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHH
Confidence            9988876666666799999999999999999999999888888888889999976     38999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy3952         232 IAKHILNELR  241 (252)
Q Consensus       232 ~g~~va~~i~  241 (252)
                      +|+++|+.+.
T Consensus       443 Ia~mIa~k~~  452 (453)
T KOG2665|consen  443 IAKMIADKFL  452 (453)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.95  E-value=3.5e-27  Score=213.99  Aligned_cols=233  Identities=21%  Similarity=0.343  Sum_probs=184.6

Q ss_pred             ChhHHHh----CC--cEEEeCceeEEEEEc-CCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEE
Q psy3952           1 MGEEFCE----LG--GEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEY   73 (252)
Q Consensus         1 l~~~a~~----~G--~~i~~~~~V~~i~~~-~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~   73 (252)
                      |++.|++    +|  ++|+++|+|++|+++ ++.|.|+|++| ++.|++||||||+||..|++++|+..++++.|++|++
T Consensus       217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~  295 (497)
T PTZ00383        217 FVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGLEYSCLPVAGSF  295 (497)
T ss_pred             HHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCCCCCEEecCceE
Confidence            3567777    78  789999999999987 45688999999 8999999999999999999999987789999999999


Q ss_pred             EEeCCCccccccceeecCCCCCCCCceeEEEEec--CCcEEEcccceecccccCcccccc-------chhHH------hh
Q psy3952          74 LLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDF-------SVREL------FS  138 (252)
Q Consensus        74 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~g~~~iG~~~~~~~~~~~~~~~~~-------~~~~~------~~  138 (252)
                      ++++.    ..++.||++|++..||.++|+.++.  +|.+++||++.+.+.+++|...++       +++ .      ++
T Consensus       296 ~~~~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~~d~~~~~~~~-~~~~~~~~~  370 (497)
T PTZ00383        296 YFSGN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSLPDFLKVWNPD-LNLLAVYFD  370 (497)
T ss_pred             EEcCh----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCchHHHHHhcCCC-hhHHHhHHH
Confidence            88852    5678999999999999999999984  889999999988877777754332       221 2      34


Q ss_pred             hhcCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCcee--cCCcceeEeecCCCC-cc-cceEEEecCC
Q psy3952         139 TLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQR--GPSGVRAQALSSSGD-LV-DDFVFHSAGR  214 (252)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~--~w~G~rp~~~~~d~~-p~-~~~~i~~~~~  214 (252)
                      .+.++++|+++.++..+++    .+++++.+++.+++++|.++.+++..  .++|+|++.++.+.+ .. ...+|...+|
T Consensus       371 ~~~~~~~~~~~~~~~~~e~----~~~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~~~~~L~~g~~~i~~~~~  446 (497)
T PTZ00383        371 LFKDSTMRKYVLRNFLFEV----PLLNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDKVSKKLLLGEGKIDPGKG  446 (497)
T ss_pred             HhhChhHHHHHHHHHHHHH----HhcCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEECCCCeEecCceEEecCCC
Confidence            4667788888777666544    35678999999999999999999986  466999999975532 21 1223444578


Q ss_pred             eEEEeccCCccccchHHHHHHHHHHHHhhc
Q psy3952         215 TLHCRNAPSPAATSSLAIAKHILNELRREF  244 (252)
Q Consensus       215 ~~~~~G~~~~G~t~a~~~g~~va~~i~~~~  244 (252)
                      .+...| .|||-|+|.+.|+.=+..|++.+
T Consensus       447 ~i~~~~-~spgast~l~~~~~d~~~~~~~~  475 (497)
T PTZ00383        447 IIFNIT-PSPGATTCLGNAESDMREICERL  475 (497)
T ss_pred             cEEecc-CCCcHHHHHHHHHHHHHHHHHHh
Confidence            877554 68999999999986555555543

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.94  E-value=7.6e-26  Score=204.80  Aligned_cols=233  Identities=20%  Similarity=0.321  Sum_probs=181.3

Q ss_pred             hhHHHh-CCcEEEeCceeEEEEEc-CCeEEEE---eCCCc--EEEcCEEEEcCCCChHHHHHHcCCCC--CCceeeeeeE
Q psy3952           2 GEEFCE-LGGEIRLNQQVESFKEN-PESVTIS---TKQGD--HLESSYALVCAGLQADEMALKSGCSL--EPAIVPFRGE   72 (252)
Q Consensus         2 ~~~a~~-~G~~i~~~~~V~~i~~~-~~~~~V~---t~~g~--~i~A~~VV~AaG~ws~~l~~~~g~~~--~~~~~p~~g~   72 (252)
                      ++.+.+ .|++++++++|++|++. +++|+|.   |+.|.  +++||+||||||+|++.|++++|++.  .+++.|++|+
T Consensus       191 ~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq  270 (497)
T PRK13339        191 AKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQ  270 (497)
T ss_pred             HHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEeeeEE
Confidence            455644 59999999999999987 6778875   55452  59999999999999999999999853  3789999999


Q ss_pred             EEEeCCCcccccc---ceeecCCCCCCCCcee-EE-EEecCCc--EEEcccceecccccCccccccchhHHhhhhcCCCc
Q psy3952          73 YLLLNPAKQHLVR---GNIYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF  145 (252)
Q Consensus        73 ~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~-~~-~~~~~g~--~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (252)
                      ++.++++  +.+.   ..||++|++..|+.++ |. .+..+|.  +++||++.+..   .+. ...+..++++++...++
T Consensus       271 ~l~l~~~--~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~---~~~-r~~~~~d~~~~l~~~~~  344 (497)
T PRK13339        271 FLRCTNP--EVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGP---KFL-KHGSNLDLFKSVKPYNI  344 (497)
T ss_pred             EEEecCH--HHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchH---HHh-ccCCHHHHHHHhCccCc
Confidence            9999763  3333   4699998876655444 55 4556785  89999988642   121 12345566677776666


Q ss_pred             ---cccchhhh---hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEE------EecC
Q psy3952         146 ---WRLGLKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVF------HSAG  213 (252)
Q Consensus       146 ---~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i------~~~~  213 (252)
                         |.+..++.   ...+.++..+  +..+++.+++++|.++.+++....+|+|++.++.|++.++||++      ...+
T Consensus       345 ~~~~~~~~~~~~l~~~~~~e~~~~--k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~  422 (497)
T PRK13339        345 TTMLAVAVKNMPLIKYSIDQVMQT--KEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQD  422 (497)
T ss_pred             HHHHHHHHhccHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCC
Confidence               66666664   5566666543  77889999999999999999999999999999999988889954      3568


Q ss_pred             CeEEEeccCCccccchHHHHHHHHHHHHh
Q psy3952         214 RTLHCRNAPSPAATSSLAIAKHILNELRR  242 (252)
Q Consensus       214 ~~~~~~G~~~~G~t~a~~~g~~va~~i~~  242 (252)
                      +.+++....|+|.|+|..+|+.|++.+-.
T Consensus       423 ~s~~~lna~SPgATssl~ia~~v~~~~f~  451 (497)
T PRK13339        423 HSVIALLGESPGASTSVSVALEVLERNFP  451 (497)
T ss_pred             CeEEEecCCCcHHHhhHHHHHHHHHHHhH
Confidence            98899999999999999999999997653

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.94  E-value=1.2e-25  Score=204.58  Aligned_cols=235  Identities=23%  Similarity=0.345  Sum_probs=185.2

Q ss_pred             ChhHHHhCC-cEEEeCceeEEEEEcCC-eEEEEe---CCCc--EEEcCEEEEcCCCChHHHHHHcCCC--CCCceeeeee
Q psy3952           1 MGEEFCELG-GEIRLNQQVESFKENPE-SVTIST---KQGD--HLESSYALVCAGLQADEMALKSGCS--LEPAIVPFRG   71 (252)
Q Consensus         1 l~~~a~~~G-~~i~~~~~V~~i~~~~~-~~~V~t---~~g~--~i~A~~VV~AaG~ws~~l~~~~g~~--~~~~~~p~~g   71 (252)
                      |++.++++| ++++++|+|++|++.++ .|.|.+   ..|.  ++.|++||+|||+|+..|++++|++  ..+++.|++|
T Consensus       189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrG  268 (494)
T PRK05257        189 LVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSG  268 (494)
T ss_pred             HHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeE
Confidence            356777876 89999999999998655 487654   3342  5999999999999999999999985  2468999999


Q ss_pred             EEEEeCCCccccccce--eecCCCCCCCCcee-EE-EEecCCc--EEEcccceecccccCccccccchhHHhhhhcCCCc
Q psy3952          72 EYLLLNPAKQHLVRGN--IYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF  145 (252)
Q Consensus        72 ~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~-~~-~~~~~g~--~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (252)
                      +++.++++. ...++.  ||+++++..|+.++ |. .+..+|.  +++||++.+...   + ....+..++++++...++
T Consensus       269 q~l~~~~~~-~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~---~-~~~~~~~d~~~~~~~~~~  343 (494)
T PRK05257        269 QFLVCENPE-VVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTK---F-LKNGSLLDLFSSVRPSNL  343 (494)
T ss_pred             EEEEcCCHH-HHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHH---h-ccCCCHHHHHHhcCcccc
Confidence            999998641 112333  89998765555444 44 4456785  999999886542   2 234456778888888899


Q ss_pred             cccc---hhhh---hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCC----CCcccce-EEEecCC
Q psy3952         146 WRLG---LKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS----GDLVDDF-VFHSAGR  214 (252)
Q Consensus       146 ~~~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d----~~p~~~~-~i~~~~~  214 (252)
                      |.++   .++.   ...+.++..+  +..+++.+++++|.++.+++....+|+|++.+++|    |+.+.|+ ++...++
T Consensus       344 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~  421 (494)
T PRK05257        344 LPMLAVGLDNFDLTKYLISQVMLS--DEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADG  421 (494)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCC
Confidence            9888   6664   5666666643  77889999999999999999999999999999888    8888895 8888899


Q ss_pred             eEEEeccCCccccchHHHHHHHHHHHHh
Q psy3952         215 TLHCRNAPSPAATSSLAIAKHILNELRR  242 (252)
Q Consensus       215 ~~~~~G~~~~G~t~a~~~g~~va~~i~~  242 (252)
                      .+++....|||.|+|..+|+.|++.+..
T Consensus       422 ~~~~l~~~SPgat~s~~i~~~v~~~~~~  449 (494)
T PRK05257        422 SIAALLGASPGASTAVPIMLEVLEKCFP  449 (494)
T ss_pred             eEEEEcCCCchHHHHHHHHHHHHHHhCH
Confidence            9999989999999999999999996653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.94  E-value=1.8e-25  Score=203.07  Aligned_cols=233  Identities=24%  Similarity=0.300  Sum_probs=173.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcC-CeEEEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCCC--CCCceeeeeeE
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENP-ESVTIST---KQG--DHLESSYALVCAGLQADEMALKSGCS--LEPAIVPFRGE   72 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~~--~~~~~~p~~g~   72 (252)
                      |++.++++|++|+++++|++|++++ ++|.|.+   ..|  .+++|++||||||+|+..|++++|++  ..+++.|++|+
T Consensus       184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq  263 (483)
T TIGR01320       184 LLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFPVSGL  263 (483)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceeeeeEE
Confidence            3567888999999999999999865 4677653   333  26999999999999999999999985  35789999999


Q ss_pred             EEEeCCC-ccccccceeecCCCCCCCCcee-EE-EEecCCcEE--Ecccce--ecccccCccc---cccchhHHhhhh--
Q psy3952          73 YLLLNPA-KQHLVRGNIYPVPDPNFPFLGV-HF-TPRMDGSVW--LGPNAV--LAFKKEGYRW---RDFSVRELFSTL--  140 (252)
Q Consensus        73 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~-~~-~~~~~g~~~--iG~~~~--~~~~~~~~~~---~~~~~~~~~~~~--  140 (252)
                      ++.++.+ .....+..||++|++..|+.++ |+ .+..+|...  +||++.  +...++++-.   ..+.+.++..++  
T Consensus       264 ~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~  343 (483)
T TIGR01320       264 FLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGV  343 (483)
T ss_pred             EEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHH
Confidence            9999754 2234567799999987767666 66 445677665  999998  6666776521   233343433331  


Q ss_pred             --cCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCC-----CCccc-ceEEEec
Q psy3952         141 --RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS-----GDLVD-DFVFHSA  212 (252)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d-----~~p~~-~~~i~~~  212 (252)
                        .+..+|+       ..+.++..+.  ...++.+++++|.++.+++...++|+|++.++.|     |..+. +|+|...
T Consensus       344 ~~~~~~~~~-------~~~~e~~~~~--~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~  414 (483)
T TIGR01320       344 GLTEMDLTK-------YLIGQLRKSE--EERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADA  414 (483)
T ss_pred             HHhhhHHHH-------HHHHHHHHhH--HHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECC
Confidence              1122222       3333333322  2457899999999999999999999999999877     33443 6688888


Q ss_pred             CCeEEEeccCCccccchHHHHHHHHHHHHh
Q psy3952         213 GRTLHCRNAPSPAATSSLAIAKHILNELRR  242 (252)
Q Consensus       213 ~~~~~~~G~~~~G~t~a~~~g~~va~~i~~  242 (252)
                      ++.+++....|||.|+|..+|+.|++.+-.
T Consensus       415 ~~~~~~l~~~SPgaTss~~i~~~v~~~~~~  444 (483)
T TIGR01320       415 DGSIAGLLGASPGASTAVSIMLDLLERCFP  444 (483)
T ss_pred             CCeEEEecCCCchHHhhHHHHHHHHHHHhH
Confidence            999999888999999999999999987653

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=99.93  E-value=3.4e-25  Score=192.72  Aligned_cols=189  Identities=20%  Similarity=0.220  Sum_probs=141.7

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA   79 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~   79 (252)
                      |++.|+++|++++++++|++++..+++| .|.|++| .+.||.||+|+|+|+..|.+       .++.|.+++++.++..
T Consensus       143 l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~  214 (337)
T TIGR02352       143 LEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAP  214 (337)
T ss_pred             HHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhccc-------CCccccCceEEEeecc
Confidence            3577899999999999999999888776 4899999 99999999999999998753       4678999999988643


Q ss_pred             ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952          80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  159 (252)
Q Consensus        80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
                      .......   +.... ......+++|..+|++++|++....    ..+. ..+.                     +.++ 
T Consensus       215 ~~~~~~~---~~~~~-~~~~~~y~~p~~~g~~~iG~~~~~~----~~~~-~~~~---------------------~~~~-  263 (337)
T TIGR02352       215 AVPLLNR---PLRAV-VYGRRVYIVPRRDGRLVVGATMEES----GFDT-TPTL---------------------GGIK-  263 (337)
T ss_pred             ccccCCc---ccceE-EEcCCEEEEEcCCCeEEEEEecccc----CccC-CCCH---------------------HHHH-
Confidence            1111111   11000 0123467888888899999765432    1110 1011                     2233 


Q ss_pred             HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHHHHH
Q psy3952         160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIAKHI  236 (252)
Q Consensus       160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g~~v  236 (252)
                              .+.+.+.++||.++..++.+.|+|+||++  +|+.|    +|+.   .+|+|+++|++|+|++++|++|+.+
T Consensus       264 --------~l~~~~~~~~P~l~~~~~~~~~~g~r~~t--~D~~p----iig~~~~~~~~~~~~g~~g~G~~~~p~~g~~l  329 (337)
T TIGR02352       264 --------ELLRDAYTILPALKEARLLETWAGLRPGT--PDNLP----YIGEHPEDRRLLIATGHYRNGILLAPATAEVI  329 (337)
T ss_pred             --------HHHHHHHHhCCCcccCcHHHheecCCCCC--CCCCC----EeCccCCCCCEEEEcccccCceehhhHHHHHH
Confidence                    34488999999999999999999999986  78766    4664   3699999999999999999999999


Q ss_pred             HHHHHh
Q psy3952         237 LNELRR  242 (252)
Q Consensus       237 a~~i~~  242 (252)
                      |++|.+
T Consensus       330 a~~i~~  335 (337)
T TIGR02352       330 ADLILG  335 (337)
T ss_pred             HHHHhc
Confidence            999975

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=99.92  E-value=5.7e-25  Score=195.04  Aligned_cols=191  Identities=15%  Similarity=0.138  Sum_probs=143.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      ++++++ |++++++++|++|+.++++|.|+|++|..++|++||+|+|+|+..+..++    .+|+.|++|+++.++++..
T Consensus       142 ~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~~~~~~~~~~  216 (381)
T TIGR03197       142 LAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQVSHLPATEA  216 (381)
T ss_pred             HhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccccc----cCCccccccceeeccCCCc
Confidence            456777 99999999999999888889999999845999999999999999887653    5788999999998864311


Q ss_pred             -ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          82 -HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        82 -~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                       ......+         ..+.|++|..+|++++|.+.+..    +... ..+.                     +.++  
T Consensus       217 ~~~~~~~~---------~~~~y~~p~~~g~~~iG~t~~~~----~~~~-~~~~---------------------~~~~--  259 (381)
T TIGR03197       217 LSALKTVL---------CYDGYLTPANNGEHCIGASYDRN----DDDL-ALRE---------------------ADHA--  259 (381)
T ss_pred             ccccCceE---------eCCceecccCCCceEeecccCCC----CCCC-CcCH---------------------HHHH--
Confidence             0111110         12347888888999999765432    1111 1000                     2222  


Q ss_pred             HhhhChhHHHHHHHHhccCCC-----CCCceecCCcceeEeecCCCCcccceEEEe------------------------
Q psy3952         161 IMSWFPSMRVNELKQYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVDDFVFHS------------------------  211 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~------------------------  211 (252)
                             .+++.+.++||.++     +.++.+.|+|+||.+  ||+.|+.+.+-+.                        
T Consensus       260 -------~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~t--~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (381)
T TIGR03197       260 -------ENLERLAECLPALAWASEVDISALQGRVGVRCAS--PDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPY  330 (381)
T ss_pred             -------HHHHHHHHhCcccchhhccCccccCceEEEeccC--CCcCccCCCCCCHHHHHHHHHHhcccccccccccCCC
Confidence                   33478999999997     678999999999986  8998864432110                        


Q ss_pred             cCCeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         212 AGRTLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       212 ~~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      .+|+|+++|++|+||+++|.+|+.+|++|.+.
T Consensus       331 ~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~~  362 (381)
T TIGR03197       331 YPGLYVLGGLGSRGLTSAPLAAEILAAQICGE  362 (381)
T ss_pred             CCCeEEEecccchHHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999999999999999755

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.92  E-value=2.9e-24  Score=189.44  Aligned_cols=210  Identities=30%  Similarity=0.451  Sum_probs=169.4

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcE-EEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDH-LESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP   78 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~-i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~   78 (252)
                      |++.|+++|++++.+++|++|++.+++ +.+.|.+|++ ++|+.||||||.+|+.|++++|++.+....|++|+|+++++
T Consensus       159 l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~  238 (429)
T COG0579         159 LAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDN  238 (429)
T ss_pred             HHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcc
Confidence            578899999999999999999998885 5578888844 99999999999999999999998766889999999999997


Q ss_pred             CccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccC-ccccccchhHHhhhhcCCCccccchhhhhhhh
Q psy3952          79 AKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEG-YRWRDFSVRELFSTLRYPGFWRLGLKYTRYGS  157 (252)
Q Consensus        79 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (252)
                      ......++.|||+|++..|+.++|+.++.+|.+++||++.+.+.... +...++                       +..
T Consensus       239 ~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~-----------------------d~~  295 (429)
T COG0579         239 EVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDF-----------------------DLL  295 (429)
T ss_pred             cccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhcccccccc-----------------------chh
Confidence            65567889999999999899999999999999999999886522111 111111                       112


Q ss_pred             HHHHhhhChhHHHHHHHHhccCCC-CCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHH
Q psy3952         158 KEMIMSWFPSMRVNELKQYIEEIE-AGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIA  233 (252)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~P~l~-~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g  233 (252)
                      +         .+......++|.+. .......++|.||+. ..+..+..+|++-.   .++.+...|.-++|+|.+++++
T Consensus       296 d---------~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~-~~~~~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~  365 (429)
T COG0579         296 D---------SVRKANSRGMPDLGIKNNVLANYAGIRPIL-KEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIA  365 (429)
T ss_pred             h---------hHHHhhhhhcccccccccchhhhheecccc-ccccccccceecccccCCCCceeeeeEEccccccChhHh
Confidence            2         22356778889887 566677899999976 44455566777753   3788899999999999999999


Q ss_pred             HHHHHHHHhh
Q psy3952         234 KHILNELRRE  243 (252)
Q Consensus       234 ~~va~~i~~~  243 (252)
                      +.+.++++++
T Consensus       366 ~~~~~~~t~~  375 (429)
T COG0579         366 GGVLELLTER  375 (429)
T ss_pred             hhHhhhcccc
Confidence            9999998875

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.92  E-value=6.6e-24  Score=190.13  Aligned_cols=192  Identities=13%  Similarity=0.128  Sum_probs=140.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      ++.++++|++|+++++|++++.+++++ .|+|+++ ++.|++||+|+|+|+..+.+.+|.  ++|+.|++++.+.++...
T Consensus       208 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~--~~pi~p~rg~~~~~~~~~  284 (416)
T PRK00711        208 AAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGV--DIPVYPLKGYSLTVPITD  284 (416)
T ss_pred             HHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCC--CcccCCccceEEEEecCC
Confidence            567888999999999999999887776 4888888 899999999999999999988886  578999999887664221


Q ss_pred             cccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          81 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                       . ....+....+.   ... +..++.+|++++|+..+..    +++. ..+.                     +..+  
T Consensus       285 -~-~~~p~~~~~~~---~~~-~~~~~~~~~~~iG~~~~~~----~~~~-~~~~---------------------~~~~--  330 (416)
T PRK00711        285 -E-DRAPVSTVLDE---TYK-IAITRFDDRIRVGGMAEIV----GFDL-RLDP---------------------ARRE--  330 (416)
T ss_pred             -C-CCCCceeEEec---ccC-EEEeecCCceEEEEEEEec----CCCC-CCCH---------------------HHHH--
Confidence             1 01111111111   111 2334457889998754421    1111 1011                     1122  


Q ss_pred             HhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe--cCCeEEEeccCCccccchHHHHHHHHH
Q psy3952         161 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS--AGRTLHCRNAPSPAATSSLAIAKHILN  238 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~--~~~~~~~~G~~~~G~t~a~~~g~~va~  238 (252)
                             .+.+.+.++||.+++.++.+.|+|+||++  +|+.|+    |+.  .+|+|+++|++|+||++||++|+.+++
T Consensus       331 -------~l~~~~~~~~P~l~~~~~~~~w~G~r~~t--~D~~Pi----IG~~~~~gl~~a~G~~g~G~~~ap~~g~~la~  397 (416)
T PRK00711        331 -------TLEMVVRDLFPGGGDLSQATFWTGLRPMT--PDGTPI----VGATRYKNLWLNTGHGTLGWTMACGSGQLLAD  397 (416)
T ss_pred             -------HHHHHHHHHCCCcccccccceeeccCCCC--CCCCCE----eCCcCCCCEEEecCCchhhhhhhhhHHHHHHH
Confidence                   23367899999999888999999999876  888775    554  379999999999999999999999999


Q ss_pred             HHHhh
Q psy3952         239 ELRRE  243 (252)
Q Consensus       239 ~i~~~  243 (252)
                      +|.+.
T Consensus       398 li~g~  402 (416)
T PRK00711        398 LISGR  402 (416)
T ss_pred             HHcCC
Confidence            99864

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=99.92  E-value=1.6e-23  Score=192.65  Aligned_cols=201  Identities=15%  Similarity=0.160  Sum_probs=145.0

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEE
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESV-TIST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL   74 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~   74 (252)
                      +++.|+++|++|+++++|++|+++++++ .|++   .+|  .+|.|++||||||+|++.|++++|.  ++++.|.||+++
T Consensus       134 l~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~--~~~i~p~kG~~l  211 (516)
T TIGR03377       134 NVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL--DIRMFPAKGALL  211 (516)
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC--CCceecceEEEE
Confidence            3678999999999999999999887764 3443   223  3699999999999999999999987  688999999999


Q ss_pred             EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      +++....   ...+...+.+   ..+.++.| .+|.+++|++.+...+++++..   +                     .
T Consensus       212 v~~~~~~---~~~~~~~~~~---~~g~~~~P-~~~~~liGtT~~~~~~~~~~~~---~---------------------~  260 (516)
T TIGR03377       212 IMNHRIN---NTVINRCRKP---SDADILVP-GDTISIIGTTSERIDDPDDLPV---T---------------------Q  260 (516)
T ss_pred             EECCccc---ccccccccCC---CCCcEEEE-CCCeEEEecCCCCCCCCCCCCC---C---------------------H
Confidence            9975321   1112111111   23456777 4778999988764322222211   1                     1


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecC-CC---Ccccce-EEEe-----cCCeEEEeccCCc
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSS-SG---DLVDDF-VFHS-----AGRTLHCRNAPSP  224 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~-d~---~p~~~~-~i~~-----~~~~~~~~G~~~~  224 (252)
                      ++++.+         ++.+.+++|.|...+|.+.|+|+||....+ ++   ...++| +++.     .+|+++++|..  
T Consensus       261 ~~v~~l---------l~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGk--  329 (516)
T TIGR03377       261 EEVDVL---------LREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK--  329 (516)
T ss_pred             HHHHHH---------HHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecch--
Confidence            345444         489999999999999999999999986432 11   112455 4442     27999999943  


Q ss_pred             cccchHHHHHHHHHHHHhhccc
Q psy3952         225 AATSSLAIAKHILNELRREFKL  246 (252)
Q Consensus       225 G~t~a~~~g~~va~~i~~~~~~  246 (252)
                       +|+++.+|+.+++++.+.++.
T Consensus       330 -ltt~r~~Ae~~~d~~~~~l~~  350 (516)
T TIGR03377       330 -LTTYRLMAEWATDVVCKKLGN  350 (516)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCC
Confidence             999999999999999998763

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.92  E-value=3.1e-23  Score=190.03  Aligned_cols=205  Identities=15%  Similarity=0.191  Sum_probs=148.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC----cEEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeEEEEe
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLLL   76 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g----~~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~~~~~   76 (252)
                      ++.|+++|++++++++|+++.++++.|.|.+.++    .++.|+.||||+|+|++.++++ +|.....++.|.||+++++
T Consensus       162 ~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~  241 (502)
T PRK13369        162 ALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVV  241 (502)
T ss_pred             HHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEEEe
Confidence            4678899999999999999999888787766443    2599999999999999999885 4753346789999999998


Q ss_pred             CCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhhhh
Q psy3952          77 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRY  155 (252)
Q Consensus        77 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (252)
                      +...... ...+++.++    ..-+++.|..+|.+++|++..... .+++...                        +.+
T Consensus       242 ~~~~~~~-~~~~~~~~d----gr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~------------------------~~~  292 (502)
T PRK13369        242 PKFWDGA-QAYLFQNPD----KRVIFANPYEGDFTLIGTTDIAYEGDPEDVAA------------------------DEE  292 (502)
T ss_pred             CCccCCC-ceEEEeCCC----CeEEEEEEecCCEEEEEecCccccCCCCCCCC------------------------CHH
Confidence            6432111 112233222    223678888778889998865321 1111111                        114


Q ss_pred             hhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCC---CcccceEEEec-----CCeEEEeccCCccc
Q psy3952         156 GSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSG---DLVDDFVFHSA-----GRTLHCRNAPSPAA  226 (252)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~---~p~~~~~i~~~-----~~~~~~~G~~~~G~  226 (252)
                      +++++         ++.++++|| .|+..+|.+.|+|+||.+.+..+   ...++|.|..+     +|+++++|   .++
T Consensus       293 ~i~~l---------l~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~  360 (502)
T PRK13369        293 EIDYL---------LDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKI  360 (502)
T ss_pred             HHHHH---------HHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChH
Confidence            45554         489999997 89999999999999998732211   22367777543     68999998   369


Q ss_pred             cchHHHHHHHHHHHHhhcccc
Q psy3952         227 TSSLAIAKHILNELRREFKLD  247 (252)
Q Consensus       227 t~a~~~g~~va~~i~~~~~~~  247 (252)
                      |+++++|+.+++++.+.++..
T Consensus       361 Tt~r~~Ae~v~d~~~~~l~~~  381 (502)
T PRK13369        361 TTFRKLAEHALERLKPFFPQM  381 (502)
T ss_pred             hhHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999998753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.91  E-value=4.1e-23  Score=189.23  Aligned_cols=203  Identities=17%  Similarity=0.146  Sum_probs=149.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC---C--cEEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeEEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLL   75 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~---g--~~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~~~~   75 (252)
                      ++.|+++|++++++++|+++..+++.|.|.+.+   |  .+|.|++||||||+|++.+.++ +|...+.++.|.||++++
T Consensus       162 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p~kG~~lv  241 (508)
T PRK12266        162 ARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIV  241 (508)
T ss_pred             HHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceeeeeeEEEE
Confidence            467889999999999999999888878776532   3  2699999999999999999875 476445789999999999


Q ss_pred             eCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          76 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      ++.... .....+++.++    ...+++.|..+|.+++|++..+.. .+++...   +                     .
T Consensus       242 l~~~~~-~~~~~~~~~~d----gr~v~~~P~~~g~~liGttd~~~~~~~~~~~~---~---------------------~  292 (508)
T PRK12266        242 VPRLFD-HDQAYILQNPD----GRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAI---S---------------------E  292 (508)
T ss_pred             ECCcCC-CCcEEEEeCCC----CCEEEEEEeCCCeEEEecCCCCCCCCCCCCCC---C---------------------H
Confidence            875321 11222334332    234667887788999998765321 1111111   0                     1


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCCCc-----ccceEEEec-----CCeEEEeccCC
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL-----VDDFVFHSA-----GRTLHCRNAPS  223 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~~p-----~~~~~i~~~-----~~~~~~~G~~~  223 (252)
                      ++++++         ++.+++++| .|+..+|.+.|+|+||.+  +|+.+     .++|+|..+     +|+++++|.. 
T Consensus       293 ~~i~~L---------l~~~~~~~p~~l~~~~ii~~waG~RPl~--~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk-  360 (508)
T PRK12266        293 EEIDYL---------CKVVNRYFKKQLTPADVVWTYSGVRPLC--DDESDSAQAITRDYTLELDDENGGAPLLSVFGGK-  360 (508)
T ss_pred             HHHHHH---------HHHHHHhcCCCCCHHHEEEEeeeeEeeC--CCCCCCcccCCcceEEEecccCCCCCeEEEEcCh-
Confidence            345544         489999996 799999999999999987  44333     478888543     6899999854 


Q ss_pred             ccccchHHHHHHHHHHHHhhcccc
Q psy3952         224 PAATSSLAIAKHILNELRREFKLD  247 (252)
Q Consensus       224 ~G~t~a~~~g~~va~~i~~~~~~~  247 (252)
                        +|+++.+|+.+++.+.+.++..
T Consensus       361 --~Tt~r~mAe~~~~~~~~~l~~~  382 (508)
T PRK12266        361 --ITTYRKLAEHALEKLAPYLPQM  382 (508)
T ss_pred             --HHHHHHHHHHHHHHHHHhcCCC
Confidence              9999999999999999998744

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.91  E-value=8.6e-24  Score=184.52  Aligned_cols=202  Identities=19%  Similarity=0.233  Sum_probs=145.0

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA   79 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~   79 (252)
                      |.+.++++|++|+++++|++|+.++++|+ |+|.+| .+.||+||||+|+|+..|+++++.  +.++.|.+++++.+++.
T Consensus       153 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g-~i~ad~vV~a~G~~s~~l~~~~~~--~~~~~~~~~~~~~~~~~  229 (358)
T PF01266_consen  153 LAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDG-EIRADRVVLAAGAWSPQLLPLLGL--DLPLRPVRGQVLVLEPP  229 (358)
T ss_dssp             HHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTE-EEEECEEEE--GGGHHHHHHTTTT--SSTEEEEEEEEEEEEGC
T ss_pred             hHHHHHHhhhhccccccccchhhccccccccccccc-ccccceeEecccccceeeeecccc--cccccccceEEEEEccC
Confidence            35678899999999999999999999998 999999 799999999999999999999986  46899999999998753


Q ss_pred             ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952          80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  159 (252)
Q Consensus        80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
                      .. .....+...+....+....++.|.. |.+.+|+......  ....     ....                  ...+.
T Consensus       230 ~~-~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~~~~--~~~~-----~~~~------------------~~~~~  282 (358)
T PF01266_consen  230 ES-PLAPAILFPPVIFGPSDGVYIRPRP-GGVLIGTADGNYD--PGPS-----PEDS------------------SGEDP  282 (358)
T ss_dssp             CS-GSSSEEEEEEECESSCTEEEEEEET-TEEEEEESECEEE--ESSS-----HHHH------------------SHHHH
T ss_pred             Cc-ccccccccccccccccccceecccc-ccccccccccccc--cccc-----cccc------------------ccccc
Confidence            22 1222222222222224577888877 8889984322110  0110     0000                  00000


Q ss_pred             HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHHHHH
Q psy3952         160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIAKHI  236 (252)
Q Consensus       160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g~~v  236 (252)
                      ..... .+.+.+.+.+++|.|+..++.+.|+|+||.+  +|+.|    +++.   .+|+|+++|++|+|+++||++|+.+
T Consensus       283 ~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t--~d~~p----~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~  355 (358)
T PF01266_consen  283 DVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFT--PDGRP----IIGELPGSPNLYLAGGHGGHGFTLAPGLAELL  355 (358)
T ss_dssp             HHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEE--TTSEC----EEEEESSEEEEEEEECETTCHHHHHHHHHHHH
T ss_pred             cccHH-HHHhHHHHHHHHHHhhhccccccccceeeec--cCCCe----eeeecCCCCCEEEEECCCchHHHHHHHHHHHH
Confidence            00001 2355689999999999999999999999986  88765    4665   4799999999999999999999999


Q ss_pred             HHH
Q psy3952         237 LNE  239 (252)
Q Consensus       237 a~~  239 (252)
                      ||+
T Consensus       356 a~~  358 (358)
T PF01266_consen  356 ADL  358 (358)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.91  E-value=2.8e-23  Score=185.67  Aligned_cols=193  Identities=13%  Similarity=0.098  Sum_probs=144.0

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEc-CCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKEN-PESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP   78 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~   78 (252)
                      |++.|+++|++++++|+|++++.. ++.+ .|.|++| ++.|++||+|||+|+..+.+++|+  .+|+.|.++++++.++
T Consensus       189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~--~~~~~~~~~~~~~~~~  265 (407)
T TIGR01373       189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGF--RLPIESHPLQALVSEP  265 (407)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCC--CCCcCcccceEEEecC
Confidence            356788999999999999999864 4554 5899999 899999999999999999998887  4778888888777654


Q ss_pred             CccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhH
Q psy3952          79 AKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK  158 (252)
Q Consensus        79 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (252)
                      .. +.....+. .+     ...+|++|+.+|++++|.+.+..   .++.... +.                     +.++
T Consensus       266 ~~-~~~~~~~~-~~-----~~~~y~~p~~~g~~~ig~~~~~~---~~~~~~~-~~---------------------~~~~  313 (407)
T TIGR01373       266 LK-PIIDTVVM-SN-----AVHFYVSQSDKGELVIGGGIDGY---NSYAQRG-NL---------------------PTLE  313 (407)
T ss_pred             CC-CCcCCeEE-eC-----CCceEEEEcCCceEEEecCCCCC---CccCcCC-CH---------------------HHHH
Confidence            21 11222221 11     23468888888899999653211   1111100 00                     1122


Q ss_pred             HHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec--CCeEEEeccCCccccchHHHHHHH
Q psy3952         159 EMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA--GRTLHCRNAPSPAATSSLAIAKHI  236 (252)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~--~~~~~~~G~~~~G~t~a~~~g~~v  236 (252)
                               .+++.+.++||.|+..++.+.|+|+||++  ||+.|+    |+..  +|+|+++|++|+|+++||++|+.+
T Consensus       314 ---------~l~~~~~~~~P~l~~~~~~~~w~G~~~~t--~D~~Pi----Ig~~~~~gl~~a~G~~g~G~~~ap~~G~~l  378 (407)
T TIGR01373       314 ---------HVLAAILEMFPILSRVRMLRSWGGIVDVT--PDGSPI----IGKTPLPNLYLNCGWGTGGFKATPASGTVF  378 (407)
T ss_pred             ---------HHHHHHHHhCCCcCCCCeEEEeccccccC--CCCCce----eCCCCCCCeEEEeccCCcchhhchHHHHHH
Confidence                     34478899999999889999999999986  888664    6653  799999999999999999999999


Q ss_pred             HHHHHhh
Q psy3952         237 LNELRRE  243 (252)
Q Consensus       237 a~~i~~~  243 (252)
                      +++|.+.
T Consensus       379 a~li~~~  385 (407)
T TIGR01373       379 AHTLARG  385 (407)
T ss_pred             HHHHhCC
Confidence            9999743

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.90  E-value=5.6e-23  Score=183.94  Aligned_cols=196  Identities=16%  Similarity=0.166  Sum_probs=136.4

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-----cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-----DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL   75 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-----~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~   75 (252)
                      |++.|+++|++++++++|++++.++++|.|.+.++     .+++|++||+|+|+|+..++++++.  .+++.|++|+++.
T Consensus       203 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~--~~~i~p~~g~~~~  280 (410)
T PRK12409        203 LAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGD--RVNVYPVKGYSIT  280 (410)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCC--CCccccCCceEEE
Confidence            35778899999999999999998787777654322     2699999999999999999998885  5789999999887


Q ss_pred             eCCCcccc-ccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          76 LNPAKQHL-VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        76 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      ++...... .....+...+.   ...+...+...|++++|++.+..    ++.. ..+.                     
T Consensus       281 ~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~igg~~~~~----~~~~-~~~~---------------------  331 (410)
T PRK12409        281 VNLDDEASRAAAPWVSLLDD---SAKIVTSRLGADRFRVAGTAEFN----GYNR-DIRA---------------------  331 (410)
T ss_pred             eecCCccccccCCceeeeec---CCcEEEEecCCCcEEEEEEEEec----CCCC-CCCH---------------------
Confidence            75321110 00000011111   11111222235678888764431    1111 1111                     


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe--cCCeEEEeccCCccccchHHH
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS--AGRTLHCRNAPSPAATSSLAI  232 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~--~~~~~~~~G~~~~G~t~a~~~  232 (252)
                      +.++         .+++.+.++||.|++..+. .|+|+||++  +|+.|+    |++  .+|+|+++|++|+|+++||++
T Consensus       332 ~~~~---------~l~~~~~~~~P~l~~~~~~-~w~G~r~~t--~D~~Pi----iG~~~~~~l~~~~G~~~~G~~~ap~~  395 (410)
T PRK12409        332 DRIR---------PLVDWVRRNFPDVSTRRVV-PWAGLRPMM--PNMMPR----VGRGRRPGVFYNTGHGHLGWTLSAAT  395 (410)
T ss_pred             HHHH---------HHHHHHHHhCCCCCccccc-eecccCCCC--CCCCCe----eCCCCCCCEEEecCCcccchhhcccH
Confidence            1222         4457899999999887766 799999976  888774    655  589999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy3952         233 AKHILNELRRE  243 (252)
Q Consensus       233 g~~va~~i~~~  243 (252)
                      |+.+|++|.+.
T Consensus       396 g~~lA~~i~~~  406 (410)
T PRK12409        396 ADLVAQVVAQK  406 (410)
T ss_pred             HHHHHHHHcCC
Confidence            99999999764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.90  E-value=1.6e-22  Score=186.71  Aligned_cols=201  Identities=13%  Similarity=0.142  Sum_probs=142.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-----CCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IST-----KQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL   75 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-----~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~   75 (252)
                      ++.|+++|++++++++|++|.++++++. |++     +++.+|.|++||||||+|++.|++++|.  ++++.|.||++++
T Consensus       156 ~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~--~~~i~p~kG~~lv  233 (546)
T PRK11101        156 MLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL--RIRMFPAKGSLLI  233 (546)
T ss_pred             HHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC--CCceeecceEEEE
Confidence            5678999999999999999998877643 442     2223799999999999999999999986  6889999999999


Q ss_pred             eCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc--cccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952          76 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF--KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYT  153 (252)
Q Consensus        76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (252)
                      ++....   ...++..+.+   ..+.++.| .++.+++|++.+...  ++++...                        +
T Consensus       234 ~~~~~~---~~vi~~~~~~---~~~~~~vp-~~~~~liGtT~~~~~~~~~~~~~~------------------------t  282 (546)
T PRK11101        234 MDHRIN---NHVINRCRKP---ADADILVP-GDTISLIGTTSTRIDYDQIDDNRV------------------------T  282 (546)
T ss_pred             ECCccC---ceeEeccCCC---CCCCEEEe-cCCEEEEeeCCCCccCCCcCCCCC------------------------C
Confidence            975321   1122222221   11224555 467789998875431  1111111                        1


Q ss_pred             hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCC----ccc-ceEEEe-----cCCeEEEeccCC
Q psy3952         154 RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD----LVD-DFVFHS-----AGRTLHCRNAPS  223 (252)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~----p~~-~~~i~~-----~~~~~~~~G~~~  223 (252)
                      .++++.+         ++.+.+++|.|...+|.+.|+|+||...+++..    ..+ +++++.     .+|+++++|.  
T Consensus       283 ~~~i~~L---------l~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GG--  351 (546)
T PRK11101        283 AEEVDIL---------LREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG--  351 (546)
T ss_pred             HHHHHHH---------HHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECC--
Confidence            1445544         488899999999999999999999986322210    112 356653     2799999994  


Q ss_pred             ccccchHHHHHHHHHHHHhhcccc
Q psy3952         224 PAATSSLAIAKHILNELRREFKLD  247 (252)
Q Consensus       224 ~G~t~a~~~g~~va~~i~~~~~~~  247 (252)
                       .+|+++.+|+.+++++.+.++..
T Consensus       352 -kltt~r~~Ae~v~d~v~~~l~~~  374 (546)
T PRK11101        352 -KLMTYRLMAEWATDAVCRKLGNT  374 (546)
T ss_pred             -hHHHHHHHHHHHHHHHHHhcCCC
Confidence             39999999999999999987643

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.90  E-value=1.4e-22  Score=179.24  Aligned_cols=195  Identities=15%  Similarity=0.150  Sum_probs=139.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.++++|++++.+++|++++.++++|.|+|++| ++.||.||+|+|+|+..++.++    .+|+.|.+++++.+++...
T Consensus       156 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~----~~~i~~~~~~~~~~~~~~~  230 (376)
T PRK11259        156 LRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL----ELPLTPVRQVLAWFQADGR  230 (376)
T ss_pred             HHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc----cCCceEEEEEEEEEecCCc
Confidence            4567788999999999999999888899999999 8999999999999999887653    4678999999988865311


Q ss_pred             --ccccceee--cCCCCCCCCceeEEEEecCCc-EEEcccceecc--cccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          82 --HLVRGNIY--PVPDPNFPFLGVHFTPRMDGS-VWLGPNAVLAF--KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        82 --~~~~~~i~--~~~~~~~~~~~~~~~~~~~g~-~~iG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                        ...+...+  ..++    ...+|++|..+|+ +++|++.....  .+.++.... ..                    .
T Consensus       231 ~~~~~~~p~~~~~~~~----~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~-~~--------------------~  285 (376)
T PRK11259        231 YSEPNRFPAFIWEVPD----GDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFV-TV--------------------A  285 (376)
T ss_pred             cCCccCCCEEEEecCC----CceeEeccCCCCCceEEEECCCCCCCCChhhccCCC-Cc--------------------H
Confidence              00111111  1111    1236677877787 99987543100  001110000 00                    0


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHH
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLA  231 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~  231 (252)
                      +.++         .+.+.+.++||.++.  +.+.|+|+||.+  ||+.|    +|+.   .+|+++++|++|+|+|++|+
T Consensus       286 ~~~~---------~l~~~~~~~~P~~~~--~~~~~~g~~~~t--~D~~P----~ig~~~~~~gl~~~~G~~g~G~~~ap~  348 (376)
T PRK11259        286 EDGA---------ELRPFLRNYLPGVGP--CLRGAACTYTNT--PDEHF----IIDTLPGHPNVLVASGCSGHGFKFASV  348 (376)
T ss_pred             HHHH---------HHHHHHHHHCCCCCc--cccceEEecccC--CCCCc----eeecCCCCCCEEEEecccchhhhccHH
Confidence            1222         344788999998876  778899999865  88866    4765   37999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy3952         232 IAKHILNELRRE  243 (252)
Q Consensus       232 ~g~~va~~i~~~  243 (252)
                      +|+.+|++|.+.
T Consensus       349 ~g~~la~li~~~  360 (376)
T PRK11259        349 LGEILADLAQDG  360 (376)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999743

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.90  E-value=4e-22  Score=186.40  Aligned_cols=202  Identities=15%  Similarity=0.127  Sum_probs=145.6

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEc--CCeE-EEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeE
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKEN--PESV-TIST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE   72 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~   72 (252)
                      |++.|+++|++++++++|+++..+  ++++ .|..   .+|  .++.|+.||||||+|++.|.++++.....++.|.||+
T Consensus       238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~  317 (627)
T PLN02464        238 LACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGV  317 (627)
T ss_pred             HHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeE
Confidence            467899999999999999999876  3443 3332   122  2589999999999999999999874324459999999


Q ss_pred             EEEeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhh
Q psy3952          73 YLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKY  152 (252)
Q Consensus        73 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (252)
                      |++++....+.....+++....   ...+++.|. +|++++|+|.++....  ... .  +                   
T Consensus       318 hlvl~~~~~~~~~~~i~~~~~d---gr~~~~~P~-~g~~liGtTd~~~~~~--~~~-~--~-------------------  369 (627)
T PLN02464        318 HIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSKTPIT--MLP-E--P-------------------  369 (627)
T ss_pred             EEecccccCCCCceEEecCCCC---CCEEEEEec-CCcEEEecCCCCCCCC--CCC-C--C-------------------
Confidence            9998642111112334443222   456888997 8899999887653211  111 1  0                   


Q ss_pred             hhhhhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCCC------cccceEEEe-cCCeEEEeccCCc
Q psy3952         153 TRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGD------LVDDFVFHS-AGRTLHCRNAPSP  224 (252)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~~------p~~~~~i~~-~~~~~~~~G~~~~  224 (252)
                      +.++++.++         +.++++|| .|...+|.+.|+|+||.+  +|+.      +.++++|.. .+|++.++|..  
T Consensus       370 t~~ei~~Ll---------~~a~~~~~~~l~~~~v~~~waG~RPl~--~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk--  436 (627)
T PLN02464        370 HEDEIQFIL---------DAISDYLNVKVRRSDVLSAWSGIRPLA--VDPSAKSTESISRDHVVCEEPDGLVTITGGK--  436 (627)
T ss_pred             CHHHHHHHH---------HHHHHhhCCCCChhhEEEEEEeEEeec--cCCCCCcccccCCceEEEecCCCeEEEECCh--
Confidence            114565554         89999999 799999999999999997  3432      235666654 37999999876  


Q ss_pred             cccchHHHHHHHHHHHHhhc
Q psy3952         225 AATSSLAIAKHILNELRREF  244 (252)
Q Consensus       225 G~t~a~~~g~~va~~i~~~~  244 (252)
                       +|+++.+|+.++|.+.+..
T Consensus       437 -~Tt~R~mAe~~~d~~~~~~  455 (627)
T PLN02464        437 -WTTYRSMAEDAVDAAIKSG  455 (627)
T ss_pred             -HHHHHHHHHHHHHHHHHhc
Confidence             9999999999999998853

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.89  E-value=4.1e-22  Score=179.20  Aligned_cols=205  Identities=18%  Similarity=0.191  Sum_probs=152.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeC-----CCcEEEcCEEEEcCCCChHHHHHHcCCCCC--CceeeeeeEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTK-----QGDHLESSYALVCAGLQADEMALKSGCSLE--PAIVPFRGEYL   74 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~-----~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~--~~~~p~~g~~~   74 (252)
                      +..|.++|++++++++|+++.++++-|.|+..     +-.+++|+.||||||+|++++.++.+...+  ..+.|.||.|+
T Consensus       171 a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHl  250 (532)
T COG0578         171 ARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHL  250 (532)
T ss_pred             HHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEE
Confidence            46788999999999999999999985556532     224699999999999999999999875433  36999999999


Q ss_pred             EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceeccc-ccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952          75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFK-KEGYRWRDFSVRELFSTLRYPGFWRLGLKYT  153 (252)
Q Consensus        75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (252)
                      +++. ..+.....+++.+.+   ...+++.|. .+..++|+|...... +++...                        +
T Consensus       251 Vv~~-~~~~~~a~~~~~~~d---~r~~f~iP~-~~~~liGTTD~~~~~~~~~~~~------------------------~  301 (532)
T COG0578         251 VVDK-KFPINQAVINRCRKD---GRIVFAIPY-EGKTLIGTTDTDYDGDPEDPRI------------------------T  301 (532)
T ss_pred             Eecc-cCCCCceEEeecCCC---CceEEEecC-CCCEEeeccccccCCCcccCCC------------------------C
Confidence            9987 223334555555532   345666764 667799999876532 222211                        2


Q ss_pred             hhhhHHHHhhhChhHHHHHHH-HhccCCCCCCceecCCcceeEeecCCCCc---ccceEEEe-c--CCeEEEeccCCccc
Q psy3952         154 RYGSKEMIMSWFPSMRVNELK-QYIEEIEAGDIQRGPSGVRAQALSSSGDL---VDDFVFHS-A--GRTLHCRNAPSPAA  226 (252)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~-~~~P~l~~~~i~~~w~G~rp~~~~~d~~p---~~~~~i~~-~--~~~~~~~G~~~~G~  226 (252)
                      .+++++++         +.++ .+-|.++..+|.+.|+|+||..-+.++.+   .+++.+.. .  +|++.++|..   +
T Consensus       302 ~eEidyll---------~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GGK---l  369 (532)
T COG0578         302 EEEIDYLL---------DAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGGK---L  369 (532)
T ss_pred             HHHHHHHH---------HHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecch---h
Confidence            26777665         7777 45588999999999999999974222222   35555544 4  6999999876   9


Q ss_pred             cchHHHHHHHHHHHHhhcccc
Q psy3952         227 TSSLAIAKHILNELRREFKLD  247 (252)
Q Consensus       227 t~a~~~g~~va~~i~~~~~~~  247 (252)
                      |+...+|+.+++.+.+.++..
T Consensus       370 TTyR~maE~a~d~v~~~lg~~  390 (532)
T COG0578         370 TTYRKMAEDALDAVCEKLGIR  390 (532)
T ss_pred             HHhHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999865

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.89  E-value=2.4e-22  Score=178.13  Aligned_cols=202  Identities=19%  Similarity=0.188  Sum_probs=148.3

Q ss_pred             ChhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952           1 MGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA   79 (252)
Q Consensus         1 l~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~   79 (252)
                      |++.++++| ..+..+++|..++..++.+.|.|++| +++|++||+|+|+|+..+..+++ ....++.|++++++.+++.
T Consensus       162 l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g-~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~~~~~~~~~  239 (387)
T COG0665         162 LAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGG-TIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTTEPP  239 (387)
T ss_pred             HHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCc-cEEeCEEEEcCchHHHHHHHhcC-CCcCccccccceEEEecCC
Confidence            356788999 56666999999987534578999999 79999999999999999999998 3368899999999999764


Q ss_pred             ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952          80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  159 (252)
Q Consensus        80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
                      ....... +.+ ........+.|++|..+|++++|.+.+...   .... +...                     ++.  
T Consensus       240 ~~~~~~~-~~~-~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~---~~~~-~~~~---------------------~~~--  290 (387)
T COG0665         240 EGLLADG-LAP-VVLVVDDGGGYIRPRGDGRLRVGGTDEEGG---DDPS-DPER---------------------EDL--  290 (387)
T ss_pred             Ccccccc-ccc-eEEEecCCceEEEEcCCCcEEEeecccccC---CCCc-cccC---------------------cch--
Confidence            2111111 000 000001346788888899999998765431   0110 0000                     110  


Q ss_pred             HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHHHHH
Q psy3952         160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIAKHI  236 (252)
Q Consensus       160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g~~v  236 (252)
                           ....+.+.+.+++|.+....+.+.|+|.||.+ +||+.|+    |+.   .+|+|+++|++++|+|+||++|+.+
T Consensus       291 -----~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t-~pd~~P~----iG~~~~~~~l~~a~G~~~~G~~~~p~~g~~l  360 (387)
T COG0665         291 -----VIAELLRVARALLPGLADAGIEAAWAGLRPPT-TPDGLPV----IGRAAPLPNLYVATGHGGHGFTLAPALGRLL  360 (387)
T ss_pred             -----hHHHHHHHHHHhCccccccccceeeeccccCC-CCCCCce----eCCCCCCCCEEEEecCCCcChhhccHHHHHH
Confidence                 01234589999999999999999999999865 3888775    553   5899999999999999999999999


Q ss_pred             HHHHHhh
Q psy3952         237 LNELRRE  243 (252)
Q Consensus       237 a~~i~~~  243 (252)
                      |++|.+.
T Consensus       361 A~li~g~  367 (387)
T COG0665         361 ADLILGG  367 (387)
T ss_pred             HHHHcCC
Confidence            9999974

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.89  E-value=1.3e-22  Score=184.09  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=138.5

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      |++.|+++|++|+++|+|++|+. ++.+.|+|++| ++.|++||+|+|+|+..+...++    .++.|++++++++++..
T Consensus       189 L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~----~~~~p~~~~~~~t~pl~  262 (460)
T TIGR03329       189 LRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFPQFE----RSIAIVSSDMVITEPAP  262 (460)
T ss_pred             HHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccChhhc----CeEEEeccceEecCCCc
Confidence            45678899999999999999985 45578999999 89999999999999988876654    34667778777765421


Q ss_pred             cccccceeec----CCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhh
Q psy3952          81 QHLVRGNIYP----VPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  156 (252)
Q Consensus        81 ~~~~~~~i~~----~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (252)
                       +.......+    ..+..  ....|++++.+|++++|........ .+......+.                    ...
T Consensus       263 -~~~~~~~~~~~~~~~d~~--~~~~y~r~~~dgrll~G~~~~~~~~-~~~~~~~~~~--------------------~~~  318 (460)
T TIGR03329       263 -DLLAATGLDHGTSVLDSR--IFVHYYRSTPDGRLMLGKGGNTFAY-GGRMLPVFNQ--------------------PSP  318 (460)
T ss_pred             -HHHHhhcCCCCceEecch--hhhhheeECCCCcEEEcCCcccccc-CcccccccCC--------------------chH
Confidence             111111111    11111  1124778888899999864321100 0000000000                    000


Q ss_pred             hHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHH
Q psy3952         157 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIA  233 (252)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g  233 (252)
                      .        .+.+.+.+.++||.|++.++.+.|+|.++++  +|+.|+    |++   .+|+|+++||+|+|+++|+.+|
T Consensus       319 ~--------~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~t--~D~~P~----iG~~~~~~gl~~a~G~~G~Gv~~a~~~G  384 (460)
T TIGR03329       319 Y--------EALLTRSLRKFFPALAEVPIAASWNGPSDRS--VTGLPF----FGRLNGQPNVFYGFGYSGNGVAPSRMGG  384 (460)
T ss_pred             H--------HHHHHHHHHHhCCCcCCCeeeEEEeceeCCC--CCCCce----eeeecCCCCEEEEeCcCCCChhHHHHHH
Confidence            1        1234478899999999999999999999886  888775    654   4799999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy3952         234 KHILNELRRE  243 (252)
Q Consensus       234 ~~va~~i~~~  243 (252)
                      +.+|++|.+.
T Consensus       385 ~~lA~li~g~  394 (460)
T TIGR03329       385 QILSSLVLGL  394 (460)
T ss_pred             HHHHHHhcCC
Confidence            9999999763

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.88  E-value=4.5e-22  Score=187.90  Aligned_cols=192  Identities=12%  Similarity=0.079  Sum_probs=140.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.+++ |++++++++|++++.++++|.|.|++|..+.|+.||+|+|+|+..+..+.    .+|+.|+||+++.++....
T Consensus       415 ~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~~----~lpl~p~RGqv~~~~~~~~  489 (662)
T PRK01747        415 LALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQTA----HLPLYSVRGQVSHLPTTPA  489 (662)
T ss_pred             HHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccccc----CCCcccccceEEeecCCcc
Confidence            456667 99999999999999888889999988855789999999999998886543    5789999999988864311


Q ss_pred             ccccceeecCCCCCCCCceeEEEE-ecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          82 HLVRGNIYPVPDPNFPFLGVHFTP-RMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        82 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                      ..       .+...+ ..+.|++| ..+|.+++|.+.+..    +... ..+.                     +...  
T Consensus       490 ~~-------~~~~~~-~~~~Y~~p~~~~g~~~iGat~~~~----~~~~-~~~~---------------------~~~~--  533 (662)
T PRK01747        490 LS-------ALKQVL-CYDGYLTPQPANGTHCIGASYDRD----DTDT-AFRE---------------------ADHQ--  533 (662)
T ss_pred             cc-------ccCcee-ECCceeCCCCCCCceEeCcccCCC----CCCC-CCCH---------------------HHHH--
Confidence            00       000000 12357888 678899999775431    1111 1111                     1222  


Q ss_pred             HhhhChhHHHHHHHHhccCC-----CCCCceecCCcceeEeecCCCCcccceEE---------------------EecCC
Q psy3952         161 IMSWFPSMRVNELKQYIEEI-----EAGDIQRGPSGVRAQALSSSGDLVDDFVF---------------------HSAGR  214 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l-----~~~~i~~~w~G~rp~~~~~d~~p~~~~~i---------------------~~~~~  214 (252)
                             .+++.+.+++|.+     .+.++.+.|+|+||.+  ||+.|+.+.+.                     ...+|
T Consensus       534 -------~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~t--pD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~g  604 (662)
T PRK01747        534 -------ENLERLAECLPQALWAKEVDVSALQGRVGFRCAS--RDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPG  604 (662)
T ss_pred             -------HHHHHHHHhCCCchhhhccCccccCceEEEeccC--CCcccccCCCCCHHHHHHHHHhhhhccccccCCCCCC
Confidence                   3347788999987     4567788999999987  89888644421                     11479


Q ss_pred             eEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         215 TLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       215 ~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      +|+++|++|+|+++||.+|+.+|++|.+.
T Consensus       605 l~v~~G~gs~Gl~~ap~~a~~lA~li~g~  633 (662)
T PRK01747        605 LYVAGALGSRGLCSAPLGAELLASQIEGE  633 (662)
T ss_pred             eEEEecccccHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999765

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.88  E-value=3e-21  Score=170.85  Aligned_cols=199  Identities=10%  Similarity=0.028  Sum_probs=135.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.++++|++++++++|++++.+++++.|.|++| ++.|++||+|+|+|+..+++++|+  .+|+.|.+++...+.....
T Consensus       152 ~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~  228 (380)
T TIGR01377       152 QELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI--EIPLQPLRINVCYWREKEP  228 (380)
T ss_pred             HHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc--CCCceEEEEEEEEEecCCc
Confidence            4567889999999999999998888888999888 899999999999999999999886  5788999988766542211


Q ss_pred             ccc----cceeecCCCCCCCCceeEEEEecCC-cEEEcccceec-ccccCccc-cccchhHHhhhhcCCCccccchhhhh
Q psy3952          82 HLV----RGNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAVLA-FKKEGYRW-RDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        82 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~g-~~~iG~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      ...    ....+.....   ...+|+.|..++ .++++...... ..++.... ...+                     .
T Consensus       229 ~~~~~~~~~p~~~~~~~---~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~  284 (380)
T TIGR01377       229 GSYGVSQAFPCFLVLGL---NPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGAD---------------------I  284 (380)
T ss_pred             cccCccCCCCEEEEeCC---CCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCC---------------------H
Confidence            100    0001100111   124666776432 35555321100 00000000 0000                     0


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHH
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLA  231 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~  231 (252)
                      +.++         .+.+.+.+++|.|.... .+.|.|+||.+  ||+.|    +|++.   +|+|+++|++|+||++||+
T Consensus       285 ~~~~---------~l~~~~~~~~P~l~~~~-~~~~~~~~~~t--~D~~p----iIg~~p~~~~l~va~G~~g~G~~~~p~  348 (380)
T TIGR01377       285 EDVQ---------ILRKFVRDHLPGLNGEP-KKGEVCMYTNT--PDEHF----VIDLHPKYDNVVIGAGFSGHGFKLAPV  348 (380)
T ss_pred             HHHH---------HHHHHHHHHCCCCCCCc-ceeeEEEeccC--CCCCe----eeecCCCCCCEEEEecCCccceeccHH
Confidence            2233         34478999999998544 46799999765  88865    57764   6999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy3952         232 IAKHILNELRRE  243 (252)
Q Consensus       232 ~g~~va~~i~~~  243 (252)
                      +|+.++|+|.+.
T Consensus       349 ~g~~la~li~~~  360 (380)
T TIGR01377       349 VGKILAELAMKL  360 (380)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2844|consensus

Probab=99.87  E-value=1.3e-21  Score=175.84  Aligned_cols=205  Identities=14%  Similarity=0.123  Sum_probs=145.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA   79 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~   79 (252)
                      |+.+|++.||.|.++|+|++|....++ +.|+|..| .|+|.+||||||.|++.+..|.|+  ..|+.|+.++|+++++-
T Consensus       193 la~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gv--kvPL~p~~H~YvvT~~I  269 (856)
T KOG2844|consen  193 LARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGV--KVPLVPMHHAYVVTSRI  269 (856)
T ss_pred             HHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCC--cccceeeeeeEEEeccc
Confidence            467899999999999999999976655 57999999 999999999999999999999996  69999999999998753


Q ss_pred             ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952          80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  159 (252)
Q Consensus        80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
                      .  .+..  .+.|..+-....+|++.. .+.+..|+........++..+..+..      +- -.+|+        ..  
T Consensus       270 e--Gi~s--~t~p~irD~DgSvylR~~-~~gil~GGyE~n~i~~egv~~~~~~~------lq-E~DWd--------~F--  327 (856)
T KOG2844|consen  270 E--GVSS--LTRPNIRDLDGSVYLRQQ-GDGILFGGYESNPIFTEGVPPGFATG------LQ-EPDWD--------HF--  327 (856)
T ss_pred             C--CccC--CCccceecccceEEEEec-CCceeccccccCceeccccCCccccc------cc-cccHh--------hh--
Confidence            1  1111  111121111334566654 44567776533211111111100000      00 01332        11  


Q ss_pred             HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHHHH
Q psy3952         160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAKHI  236 (252)
Q Consensus       160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~~v  236 (252)
                             +..++.+.+++|.|++..|.+..+|..  +++||.+|.    ++++   .|+|++.|+++.|++++.++|+.+
T Consensus       328 -------~~hlesai~r~P~l~k~~i~~~v~gpe--~ftPD~~p~----mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~l  394 (856)
T KOG2844|consen  328 -------EPHLEAAIERVPVLEKAGIKSLVNGPE--TFTPDHLPI----MGESPEVRGYWVACGFNSAGLSFGGGCGKYL  394 (856)
T ss_pred             -------HHHHHHHHHhCchhhhcCccceecCcc--ccCCccccc----cCCCccccceEEeecCCccceeccCchhHHH
Confidence                   233478888999999999999999954  556998875    6665   499999999999999999999999


Q ss_pred             HHHHHhh
Q psy3952         237 LNELRRE  243 (252)
Q Consensus       237 a~~i~~~  243 (252)
                      ++||.+.
T Consensus       395 a~wi~~g  401 (856)
T KOG2844|consen  395 AEWIIHG  401 (856)
T ss_pred             HHHhhcC
Confidence            9999854

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.86  E-value=3e-21  Score=170.18  Aligned_cols=186  Identities=15%  Similarity=0.181  Sum_probs=127.0

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      ++.+.++ |++|+++++|++|+..    .|.|++| .+.|++||||+|+|+..|...++.  ++++.|+|++.+.+++..
T Consensus       152 ~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~~~--~~~~~p~~~q~~~~~p~~  224 (365)
T TIGR03364       152 AAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFETLFPELFA--ASGVRRCKLQMMRTAPQP  224 (365)
T ss_pred             HHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChhhhCcchhh--ccCcceEEEEeeeccCCC
Confidence            3455665 9999999999999743    6888889 799999999999999998766654  578899999998887532


Q ss_pred             cccccceee--------------------------cCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchh
Q psy3952          81 QHLVRGNIY--------------------------PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVR  134 (252)
Q Consensus        81 ~~~~~~~i~--------------------------~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~  134 (252)
                      ...+...+.                          +.|.......+++++|+.+|++++|++.+.....+.+     +..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~-----~~~  299 (365)
T TIGR03364       225 RLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLAPDPF-----DDE  299 (365)
T ss_pred             CCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCCCCCc-----chH
Confidence            100111000                          0011000123578899999999999875432110000     000


Q ss_pred             HHhhhhcCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe-cC
Q psy3952         135 ELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-AG  213 (252)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~-~~  213 (252)
                                          +..+         .+.+.+.+++ .|++.++.+.|+|+||++  ||..|+    ++. .+
T Consensus       300 --------------------~~~~---------~l~~~~~~~~-~l~~~~~~~~w~G~r~~t--~d~~~v----~~~~~~  343 (365)
T TIGR03364       300 --------------------EIDN---------LILAEAKTIL-GLPDLDIVERWQGVYASS--PPAPIF----LERPDD  343 (365)
T ss_pred             --------------------HHHH---------HHHHHHHHhc-CCCCCceEEEEeEEecCC--CCCCce----ecCCCC
Confidence                                1111         2235566665 788889999999999986  675443    433 48


Q ss_pred             CeEEEeccCCccccchHHHHHH
Q psy3952         214 RTLHCRNAPSPAATSSLAIAKH  235 (252)
Q Consensus       214 ~~~~~~G~~~~G~t~a~~~g~~  235 (252)
                      |+|+++|++|+|+++||++|++
T Consensus       344 g~~~a~G~~g~G~~~ap~~~~~  365 (365)
T TIGR03364       344 GVTVVVVTSGAGMTLSFGLAEE  365 (365)
T ss_pred             CeEEEEecCCCcccccccccCC
Confidence            9999999999999999999863

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG2853|consensus

Probab=99.81  E-value=8.2e-19  Score=147.51  Aligned_cols=207  Identities=14%  Similarity=0.112  Sum_probs=139.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe--------------------EEEEeCCC--cEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES--------------------VTISTKQG--DHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~--------------------~~V~t~~g--~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      .+.|...|+.+..+ +|++++.+..+                    +.|.-+++  .++++..+|||||+||.++++++|
T Consensus       250 rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAg  328 (509)
T KOG2853|consen  250 RRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAG  328 (509)
T ss_pred             HHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhc
Confidence            46688899999865 79998865221                    22333332  469999999999999999999986


Q ss_pred             CC-------CCCceeeeeeEEEEeCCCccccccceeecCCCCCCCCceeEEEEec-CCcEEEcccceecccccCcccccc
Q psy3952          60 CS-------LEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM-DGSVWLGPNAVLAFKKEGYRWRDF  131 (252)
Q Consensus        60 ~~-------~~~~~~p~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~g~~~iG~~~~~~~~~~~~~~~~~  131 (252)
                      +.       .++|+.|.|-+.++...+..+...     +|... .-.|+|++++. .|+++.|-+-.. +...++...++
T Consensus       329 IG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~-----~Pl~i-DpsG~f~Rrdglg~nfl~grsp~e-d~~~d~~nldV  401 (509)
T KOG2853|consen  329 IGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLD-----TPLTI-DPSGVFFRRDGLGGNFLCGRSPSE-DEEPDHSNLDV  401 (509)
T ss_pred             cCCCCceeeecccCCccceeEEEEeCCCCCCCC-----CceeE-CCCccEEEecCCCCceecccCCcc-ccCCCcccccc
Confidence            53       357888988887776543212111     11111 12488888874 567787733111 11123332233


Q ss_pred             chhHHhhhhcCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe
Q psy3952         132 SVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS  211 (252)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~  211 (252)
                      |.+.+                             -+.+.-.+...+|.++..++...|+|..... +-|    ...+|++
T Consensus       402 D~d~F-----------------------------~qkiwP~L~nRVP~fetakVqsaWaGyyD~N-tfD----~ngViG~  447 (509)
T KOG2853|consen  402 DHDYF-----------------------------YQKIWPHLANRVPAFETAKVQSAWAGYYDHN-TFD----DNGVIGE  447 (509)
T ss_pred             ChHHH-----------------------------HhhhhHHHHhcccccceeeeeehhccccccc-ccc----cCCcccC
Confidence            33221                             1233356777899999999999999977543 223    3456888


Q ss_pred             cC---CeEEEeccCCccccchHHHHHHHHHHHHhh----ccccccc
Q psy3952         212 AG---RTLHCRNAPSPAATSSLAIAKHILNELRRE----FKLDELS  250 (252)
Q Consensus       212 ~~---~~~~~~G~~~~G~t~a~~~g~~va~~i~~~----~~~~~~~  250 (252)
                      +|   |++.++||+|||+..+|++|+.++|+|.+.    ++|++|+
T Consensus       448 HP~y~Nly~atGFsghGvqqs~avgRAiaElIldG~f~tidLsrf~  493 (509)
T KOG2853|consen  448 HPLYTNLYMATGFSGHGVQQSPAVGRAIAELILDGAFITIDLSRFD  493 (509)
T ss_pred             CcceeeeeeeecccccchhcchHHHHHHHHHHhcCceeEEeccccc
Confidence            86   999999999999999999999999999864    6666654

>KOG0042|consensus

Probab=99.73  E-value=3.2e-17  Score=144.93  Aligned_cols=208  Identities=15%  Similarity=0.144  Sum_probs=145.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-E---E---EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-V---T---ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL   74 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~---~---V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~   74 (252)
                      +-.|.++||.+.++.+|.++.+++++ +   .   ..|++...|+|+.||||+|+.++.|.+|-....+.-+.|..|.|+
T Consensus       231 AlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~pSsGvHI  310 (680)
T KOG0042|consen  231 ALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVPSSGVHI  310 (680)
T ss_pred             HHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCceeccCCceeE
Confidence            34578999999999999998876543 2   2   346666779999999999999999999876433444689999999


Q ss_pred             EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      +++.-..+.--+.+-|.-.   .+.-+++.| +.|..+.|+|..+..-.....+                        ++
T Consensus       311 VlP~yY~P~~mGlldP~Ts---DgRViFflP-Wqg~TIaGTTD~pt~v~~~P~P------------------------tE  362 (680)
T KOG0042|consen  311 VLPGYYCPENMGLLDPKTS---DGRVIFFLP-WQGKTIAGTTDIPTSVTHSPTP------------------------TE  362 (680)
T ss_pred             EcccccCCcccccccCCCC---CCcEEEEec-cCCceeeccCCCCCCCCCCCCC------------------------CH
Confidence            9974221111111111111   133445555 6789999988765321111111                        12


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhc---cCCCCCCceecCCcceeEeecCCC-----CcccceEEEe-cCCeEEEeccCCcc
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYI---EEIEAGDIQRGPSGVRAQALSSSG-----DLVDDFVFHS-AGRTLHCRNAPSPA  225 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~---P~l~~~~i~~~w~G~rp~~~~~d~-----~p~~~~~i~~-~~~~~~~~G~~~~G  225 (252)
                      ++++         +++++++.++   +.++.+++...|+|+||+..+|+.     ...+++++.. .+|++.++|..   
T Consensus       363 ~dIq---------fIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGK---  430 (680)
T KOG0042|consen  363 DDIQ---------FILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGK---  430 (680)
T ss_pred             HHHH---------HHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCc---
Confidence            4455         4458888887   248889999999999999988732     1234555554 46999999876   


Q ss_pred             ccchHHHHHHHHHHHHhhcccccc
Q psy3952         226 ATSSLAIAKHILNELRREFKLDEL  249 (252)
Q Consensus       226 ~t~a~~~g~~va~~i~~~~~~~~~  249 (252)
                      ||+.+.+||...+.+.+..++...
T Consensus       431 WTTyR~MAEeTVd~aI~~~~lk~~  454 (680)
T KOG0042|consen  431 WTTYRHMAEETVDAAIKAGDLKPA  454 (680)
T ss_pred             chhHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999988887763

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.71  E-value=3.9e-16  Score=137.18  Aligned_cols=234  Identities=22%  Similarity=0.303  Sum_probs=157.6

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCe-EEEEe-----CCCcEEEcCEEEEcCCCChHHHHHHcCCC--CCCceeeeeeE
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPES-VTIST-----KQGDHLESSYALVCAGLQADEMALKSGCS--LEPAIVPFRGE   72 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~-~~V~t-----~~g~~i~A~~VV~AaG~ws~~l~~~~g~~--~~~~~~p~~g~   72 (252)
                      .+.+++. |++++.+++|++|++.+++ |.|.+     .+..++.|+.|++.||++|-.|+++.|++  ..+-..|+.|+
T Consensus       188 ~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~  267 (488)
T PF06039_consen  188 VEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQ  267 (488)
T ss_pred             HHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccce
Confidence            4566666 9999999999999998765 98764     22247999999999999999999999974  35677899999


Q ss_pred             EEEeCCCc-cccccceeecCCCC-CCCCceeEEEEe-cCC--cEEEcccceeccc--ccCccc---cccchhHHhhhhcC
Q psy3952          73 YLLLNPAK-QHLVRGNIYPVPDP-NFPFLGVHFTPR-MDG--SVWLGPNAVLAFK--KEGYRW---RDFSVRELFSTLRY  142 (252)
Q Consensus        73 ~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~g--~~~iG~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~  142 (252)
                      +++++.+. ...-++.||....+ .-|+.-.|+.++ .+|  .+++||++.+.+.  +.+.-.   .++.+.++..++. 
T Consensus       268 fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~-  346 (488)
T PF06039_consen  268 FLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLA-  346 (488)
T ss_pred             EEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHH-
Confidence            99997542 11125677876553 235666676665 355  5889999876532  333211   1233344444332 


Q ss_pred             CCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCc--c---cceEEEecCCeEE
Q psy3952         143 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL--V---DDFVFHSAGRTLH  217 (252)
Q Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p--~---~~~~i~~~~~~~~  217 (252)
                      .+..++.+.  ...+.+++  ++.+..++++++++|.++.+++.-..+|+|++.+.+|..-  +   .--+|....|.+.
T Consensus       347 ~~~~n~~L~--kYLi~q~~--~s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGTevI~s~dGsia  422 (488)
T PF06039_consen  347 VGLDNFDLT--KYLIGQVL--QSKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGTEVITSADGSIA  422 (488)
T ss_pred             HHhhhhhHH--HHHHHhhc--cCHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCceEEecCCCceE
Confidence            122222221  12233333  4567778999999999999999999999999999766321  1   1113444578777


Q ss_pred             EeccCCccccchHHHHHHHHHHH
Q psy3952         218 CRNAPSPAATSSLAIAKHILNEL  240 (252)
Q Consensus       218 ~~G~~~~G~t~a~~~g~~va~~i  240 (252)
                      +.=..|||.++|..+.-.+.+.+
T Consensus       423 aLLGASPGASTav~iMl~vl~~c  445 (488)
T PF06039_consen  423 ALLGASPGASTAVSIMLDVLERC  445 (488)
T ss_pred             eeccCCCChhhhHHHHHHHHHHH
Confidence            65457899999998866555543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG3923|consensus

Probab=99.65  E-value=7.1e-16  Score=127.64  Aligned_cols=177  Identities=21%  Similarity=0.249  Sum_probs=124.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+...++|+++.+ .+|++++.-.        +   =.+|.||||+|.|+..|+   |.+   .++|+||+++.++.   
T Consensus       158 ~k~l~e~Gvef~~-r~v~~l~E~~--------~---~~~DVivNCtGL~a~~L~---gDd---~~yPiRGqVl~V~A---  216 (342)
T KOG3923|consen  158 KKRLTENGVEFVQ-RRVESLEEVA--------R---PEYDVIVNCTGLGAGKLA---GDD---DLYPIRGQVLKVDA---  216 (342)
T ss_pred             HHHHHhcCcEEEE-eeeccHHHhc--------c---CCCcEEEECCcccccccc---CCc---ceeeccceEEEeeC---
Confidence            3456778888765 4677665321        1   257999999999999885   642   38999999999975   


Q ss_pred             ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHHH
Q psy3952          82 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMI  161 (252)
Q Consensus        82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (252)
                      +.+++.+|.  +    +.+.|++|. .+++.+|++..+    .+++. .+..                     ++..   
T Consensus       217 pWvkhf~~~--D----~~~ty~iP~-~~~V~lGg~~Q~----g~w~~-ei~~---------------------~D~~---  260 (342)
T KOG3923|consen  217 PWVKHFIYR--D----FSRTYIIPG-TESVTLGGTKQE----GNWNL-EITD---------------------EDRR---  260 (342)
T ss_pred             CceeEEEEe--c----CCccEEecC-CceEEEcccccc----CcccC-cCCh---------------------hhHH---
Confidence            456676664  2    223466764 567899987553    23332 1111                     2222   


Q ss_pred             hhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe------c--CCeEEEeccCCccccchHHHH
Q psy3952         162 MSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS------A--GRTLHCRNAPSPAATSSLAIA  233 (252)
Q Consensus       162 ~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~------~--~~~~~~~G~~~~G~t~a~~~g  233 (252)
                            .+++....+.|+|...+|++.|+|+||.-  +.   +   -++.      .  .-+++..|++|.|+|+++++|
T Consensus       261 ------dIl~rc~aL~P~l~~a~ii~E~vGlRP~R--k~---v---RlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtA  326 (342)
T KOG3923|consen  261 ------DILERCCALEPSLRHAEIIREWVGLRPGR--KQ---V---RLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTA  326 (342)
T ss_pred             ------HHHHHHHHhCcccccceehhhhhcccCCC--Cc---e---eeeeeeecCCCccceeEeeccCCCCceecccchH
Confidence                  34588999999999999999999999864  11   1   1221      1  245899999999999999999


Q ss_pred             HHHHHHHHhhcccccc
Q psy3952         234 KHILNELRREFKLDEL  249 (252)
Q Consensus       234 ~~va~~i~~~~~~~~~  249 (252)
                      -..+.++...++.+.|
T Consensus       327 lea~~Lv~~~l~~~kl  342 (342)
T KOG3923|consen  327 LEAAKLVLDALGASKL  342 (342)
T ss_pred             HHHHHHHHHHhhhccC
Confidence            9999999888776654

>KOG2820|consensus

Probab=99.64  E-value=1.1e-14  Score=122.64  Aligned_cols=200  Identities=13%  Similarity=0.114  Sum_probs=116.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEE---cCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeE--EEEe
Q psy3952           3 EEFCELGGEIRLNQQVESFKE---NPESVTISTKQGDHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGE--YLLL   76 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~---~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~--~~~~   76 (252)
                      ..|++.|+.++.+.+|+.++.   ++..+.|.|.+|..+.|+.+|+++|+|...+++. +++  ..|+.|.+=.  ++..
T Consensus       161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~--~~Pv~~i~ltvcywk~  238 (399)
T KOG2820|consen  161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAI--GFPVAPIQLTVCYWKT  238 (399)
T ss_pred             HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCccccc--CCccceeEeehhhhee
Confidence            457899999999999999885   3445779999996699999999999999999874 444  4666665422  1111


Q ss_pred             CCCcc-c-cccceee---cCCCCCCCCceeEEEEec--CCcEEEcc----cceecccccCccccccchhHHhhhhcCCCc
Q psy3952          77 NPAKQ-H-LVRGNIY---PVPDPNFPFLGVHFTPRM--DGSVWLGP----NAVLAFKKEGYRWRDFSVRELFSTLRYPGF  145 (252)
Q Consensus        77 ~~~~~-~-~~~~~i~---~~~~~~~~~~~~~~~~~~--~g~~~iG~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (252)
                      -.... . ......+   |.|+..+   -.|..|..  .|...+.-    .+.+ .+++.....+             . 
T Consensus       239 ~~~~~~~l~~d~~f~~F~~~~~~~~---~~ya~p~~eYpg~~k~~yh~g~~v~~-~~~~~p~~~s-------------~-  300 (399)
T KOG2820|consen  239 KKNMPVYLFDDDCFYAFPPYPDTKL---IKYALPGYEYPGLMKVDYHEGSKVVP-IDPDGPPKRS-------------L-  300 (399)
T ss_pred             ecCCceeecCCCCceeccCCCCcce---EEeccCCCCCcceEEEeecCCCcCCC-CCCCCCcccC-------------c-
Confidence            11000 0 0000001   1111100   01111111  11111110    0000 0011111000             0 


Q ss_pred             cccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecC---CeEEEeccC
Q psy3952         146 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAG---RTLHCRNAP  222 (252)
Q Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~---~~~~~~G~~  222 (252)
                              ..+++.         +.+..+.+.|.+++.....    .+  .|-..++|+.+|+|+.+|   |++++.|++
T Consensus       301 --------~~~idl---------~~~f~~~~~p~l~~~~p~~----t~--~C~YT~TpD~~FviD~~P~~~Nv~Vg~G~S  357 (399)
T KOG2820|consen  301 --------PKAIDL---------MRRFLRTFGPDLDDRSPIN----TK--MCMYTDTPDANFVIDKHPQYDNVFVGGGGS  357 (399)
T ss_pred             --------chHHHH---------HHHHHHHhCccccCCCcce----ee--EEEeeCCCCcCeeeecCCCcccEEEecCCC
Confidence                    012322         2356778889998554432    12  222456788899999865   999999999


Q ss_pred             CccccchHHHHHHHHHHHHhhcc
Q psy3952         223 SPAATSSLAIAKHILNELRREFK  245 (252)
Q Consensus       223 ~~G~t~a~~~g~~va~~i~~~~~  245 (252)
                      ||||+++|++|+.+++++.+.+.
T Consensus       358 GHGFK~aP~iGk~lae~~~~~~~  380 (399)
T KOG2820|consen  358 GHGFKFAPNIGKYLAEMAMGDLS  380 (399)
T ss_pred             CcceeecchHHHHHHHHhhhccc
Confidence            99999999999999999987643

>KOG2852|consensus

Probab=99.08  E-value=4.8e-09  Score=87.21  Aligned_cols=198  Identities=10%  Similarity=0.008  Sum_probs=107.1

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCeEE-E-Ee---CCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPESVT-I-ST---KQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL   75 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-V-~t---~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~   75 (252)
                      ++.|++. ||+++.+ +|.++..+.++.. | ..   .......++++|+++|+|+..|....++      .-.+-..+.
T Consensus       154 ~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~rI------sglrihsI~  226 (380)
T KOG2852|consen  154 LSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFTRI------SGLRIHSIT  226 (380)
T ss_pred             HHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcccccc------ceeeeeeEE
Confidence            3455555 5998886 6888864444432 2 11   1133577889999999999998654432      333333444


Q ss_pred             eCCCccccccceeecC--CCCCC--CCceeEEEEecCC-cEEEcccceecccccCccccccchhHHhhhhcCCCccccch
Q psy3952          76 LNPAKQHLVRGNIYPV--PDPNF--PFLGVHFTPRMDG-SVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGL  150 (252)
Q Consensus        76 ~~~~~~~~~~~~i~~~--~~~~~--~~~~~~~~~~~~g-~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (252)
                      +++...+.-...++..  +..++  -.+-+|.+  .++ .+++|.+.....-+++.+...+++.+               
T Consensus       227 l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~r--kd~Evyicg~~~~e~~lPedsd~v~~npek---------------  289 (380)
T KOG2852|consen  227 LSPGEKPVGPSAVFCELNTMDGLEICKPEEYAR--KDREVYICGETDKEHLLPEDSDDVFVNPEK---------------  289 (380)
T ss_pred             ecCCCCCCCCceEEEEEEeCCCccccCcceeec--CCceEEEecCCCccccCCcccccceeCHHH---------------
Confidence            5443211111112111  11110  01223433  343 45566554433223333322223322               


Q ss_pred             hhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec-CCeEEEeccCCccccch
Q psy3952         151 KYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-GRTLHCRNAPSPAATSS  229 (252)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~-~~~~~~~G~~~~G~t~a  229 (252)
                            +..+         .+.+..+.+.+....+...=+=.-|.+.. .|.|    +|+.. .++|+++||+==|+|.+
T Consensus       290 ------i~~L---------k~~a~~v~s~l~ks~v~~~qacfLP~sn~-tg~P----vIget~sg~yVaagHscWGItna  349 (380)
T KOG2852|consen  290 ------IIEL---------KEMADLVSSELTKSNVLDAQACFLPTSNI-TGIP----VIGETKSGVYVAAGHSCWGITNA  349 (380)
T ss_pred             ------HHHH---------HHHHHHhhhhhccchhhhhhhccccccCC-CCCc----eEeecCCceEEeecccccceecC
Confidence                  2222         24455555666666554432223444321 2444    58764 49999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy3952         230 LAIAKHILNELRRE  243 (252)
Q Consensus       230 ~~~g~~va~~i~~~  243 (252)
                      |++|+.||++|.+.
T Consensus       350 PaTG~~mAEllldg  363 (380)
T KOG2852|consen  350 PATGKCMAELLLDG  363 (380)
T ss_pred             cchhHHHHHHHhcc
Confidence            99999999999864

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.46  E-value=3.6e-05  Score=65.36  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=46.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEe-CCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTIST-KQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++.+++|+++..+++++++.. .++.+++||.||.|+|.++. +.++++..
T Consensus        98 ~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~~~~  157 (295)
T TIGR02032        98 AERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKLGLR  157 (295)
T ss_pred             HHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhcCCC
Confidence            4667888999999999999998887766543 23337999999999999984 77777753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.45  E-value=4.8e-06  Score=75.27  Aligned_cols=59  Identities=17%  Similarity=0.289  Sum_probs=48.0

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      |.+.|++.|++++.+++|++++.+++++. |.++.+ ++.|+.||.|+|.++ .+++.+|+.
T Consensus       114 L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~-~i~A~~VI~A~G~~s-~l~~~lgl~  173 (428)
T PRK10157        114 LMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD-VIEAKTVILADGVNS-ILAEKLGMA  173 (428)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc-EEECCEEEEEeCCCH-HHHHHcCCC
Confidence            35678889999999999999988777764 555544 899999999999976 577788763

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.30  E-value=6.9e-05  Score=66.77  Aligned_cols=59  Identities=15%  Similarity=0.304  Sum_probs=51.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++.+++|++++.++++++|++++|.+++|+.||.|.|.|| .+.+.+|+.
T Consensus       120 ~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~g~~  178 (392)
T PRK08773        120 WAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS-TLRELAGLP  178 (392)
T ss_pred             HHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhhcCC
Confidence            45677889999999999999998888888887776899999999999999 588888864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.26  E-value=0.00011  Score=65.10  Aligned_cols=59  Identities=14%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+.+.| ++++.+++|++++.+++++.|++.+|.++.||.||.|.|.+|. +.+.++.+
T Consensus       113 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~l~~~  172 (385)
T TIGR01988       113 WERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK-VRQLAGIP  172 (385)
T ss_pred             HHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH-HHHHcCCC
Confidence            45677777 9999999999999888888888888867999999999999985 76777753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02697 lycopene epsilon cyclase

Probab=98.25  E-value=7.6e-05  Score=69.02  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=53.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP   78 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~   78 (252)
                      .+.+.++|+++ .+++|+++..+++++. +.+.+|.++.|+.||.|+|.|+..+..........+.+...|..+.++.
T Consensus       199 l~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~  275 (529)
T PLN02697        199 LRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVEN  275 (529)
T ss_pred             HHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecC
Confidence            45677889998 5689999988777765 4455565899999999999999655431110113446778888877753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.22  E-value=0.00016  Score=64.31  Aligned_cols=73  Identities=11%  Similarity=0.021  Sum_probs=51.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN   77 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~   77 (252)
                      .+.+++.|++++ .++|++++.+ ++.+.|++++|.+++|+.||.|+|.++ .+ +..............|..+.++
T Consensus        92 ~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~-~~~~~~~~~~~q~~~G~~~~~~  165 (388)
T TIGR01790        92 LQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP-LV-QYVRFPLNVGFQVAYGVEARLS  165 (388)
T ss_pred             HHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch-hc-ccccCCCCceEEEEEEEEEEEc
Confidence            456777899986 5689998877 566888888876899999999999998 22 2111111334455677777665

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.18  E-value=6e-06  Score=73.68  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCC--cEEEcCEEEEcCCCC-hHHHHHHcC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQ-ADEMALKSG   59 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g--~~i~A~~VV~AaG~w-s~~l~~~~g   59 (252)
                      |.+.++++|++++.+++|+++..++++++ |.|.++  ..++||+||+|+|+| |..|.+.++
T Consensus       269 L~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~  331 (419)
T TIGR03378       269 LKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFD  331 (419)
T ss_pred             HHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcC
Confidence            35678899999999999999998888765 776654  379999999999999 999977664

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06185 hypothetical protein; Provisional

Probab=98.13  E-value=0.00022  Score=63.81  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=51.6

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeE---EEEeCCC-cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESV---TISTKQG-DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL   76 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~---~V~t~~g-~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~   76 (252)
                      +.+++ .|++++.+++|++++.+++++   .+.+.+| .+++|+.||.|.|.||. +.+++|+.  .+..+..+..+.+
T Consensus       116 ~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~--~~~~~~~~~~~~~  191 (407)
T PRK06185        116 EEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLE--VREFGAPMDVLWF  191 (407)
T ss_pred             HHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCC--ccccCCCceeEEE
Confidence            34544 489999999999999877765   3444455 36999999999999996 77888873  4445555555444

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.13  E-value=0.00022  Score=63.35  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.| ++++ +++|++++.+++++.|++.+|.+++||.||.|.|.||. +.+.+|..
T Consensus       118 ~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~~~~  176 (388)
T PRK07608        118 WAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW-VRSQAGIK  176 (388)
T ss_pred             HHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhcCCC
Confidence            45677777 9988 89999999888888888877767999999999999996 77778763

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.08  E-value=0.00044  Score=61.56  Aligned_cols=58  Identities=7%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      +.+++. |++++.+++|++++.++++|.|.+.+|.+++|+.||.|.|.||. +.+.+|+.
T Consensus       120 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vR~~~~~~  178 (391)
T PRK08020        120 QALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ-VRQMAGIG  178 (391)
T ss_pred             HHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch-hHHHcCCC
Confidence            445555 99999999999999888888888877768999999999999995 77777764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.06  E-value=0.00037  Score=61.73  Aligned_cols=59  Identities=8%  Similarity=0.123  Sum_probs=49.6

Q ss_pred             hhHHHh-CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++ .|++++.+++|++++.++++|+|++.+|.++.||.||.|.|.||. +.++++++
T Consensus       112 ~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~  171 (382)
T TIGR01984       112 LSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK-VRELLSIP  171 (382)
T ss_pred             HHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH-HHHHcCCC
Confidence            345666 499999999999999888888888877767999999999999985 77778763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.99  E-value=0.00086  Score=59.76  Aligned_cols=59  Identities=17%  Similarity=0.288  Sum_probs=45.7

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC------C--cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQ------G--DHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~------g--~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      |.+.|.+.|++++.. .|+++..+++++.|++.+      |  .+++|+.||.|.|.+|. +.+.+|.+
T Consensus        98 L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~lg~~  164 (388)
T TIGR02023        98 LRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKELGLP  164 (388)
T ss_pred             HHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHcCCC
Confidence            356678889999765 699998888887765431      1  37999999999999984 77888764

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.98  E-value=0.0008  Score=59.82  Aligned_cols=52  Identities=15%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .|++++++++|+++..++++|.|++.+|..+.||.||.|.|.|+. +.+.++.
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~~~  177 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA-LREALGI  177 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh-hHHhhCC
Confidence            589999999999999888889888877767999999999999986 7777776

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.95  E-value=0.00017  Score=64.39  Aligned_cols=59  Identities=22%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++.+++|++++.+++.+.|++.+|.++.||.||.|.|.+|. +.+.+|+.
T Consensus       118 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~  176 (403)
T PRK07333        118 RKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK  176 (403)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence            456778899999999999999888888888877768999999999999986 77778763

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.91  E-value=0.0014  Score=58.59  Aligned_cols=60  Identities=18%  Similarity=0.299  Sum_probs=48.4

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      |++.|++.|+++..+++|+++..+++++.+. ...+.+++|++||.|.|..+ .+++.+|..
T Consensus       101 La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~lg~~  161 (396)
T COG0644         101 LAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS-ALARKLGLK  161 (396)
T ss_pred             HHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch-HHHHHhCCC
Confidence            4678999999999999999999988776533 32225899999999999965 577888864

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.87  E-value=0.0016  Score=57.89  Aligned_cols=192  Identities=16%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCccc
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQH   82 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~   82 (252)
                      +.++ .+..++.+++|++|+..++.+.|.+.+|.+++|+.||.|.|..+. ...      ....+...|..+.++.+..+
T Consensus        95 ~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~~~------~~~~Q~f~G~~v~~~~~~f~  166 (374)
T PF05834_consen   95 ERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-KAR------PLGLQHFYGWEVETDEPVFD  166 (374)
T ss_pred             HHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-ccc------ccccceeEEEEEeccCCCCC
Confidence            4455 345567789999999988888888888878999999999996554 111      12223455666666543111


Q ss_pred             ccccee--ecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          83 LVRGNI--YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        83 ~~~~~i--~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                      .-...+  +.++.......-+|+.|...++.++..|....    ..   ..+.                     +.++. 
T Consensus       167 ~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~----~~---~~~~---------------------~~~~~-  217 (374)
T PF05834_consen  167 PDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP----RP---ALPE---------------------EELKA-  217 (374)
T ss_pred             CCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC----CC---CCCH---------------------HHHHH-
Confidence            111111  12222101123355677777888887553211    00   0111                     11211 


Q ss_pred             HhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcc--cceEEEecCCeEEEeccCCccccchHHHHHHHHH
Q psy3952         161 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV--DDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILN  238 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~--~~~~i~~~~~~~~~~G~~~~G~t~a~~~g~~va~  238 (252)
                             .+.+.+.+  -+++..+|.+.=.|+.|++..++-...  +-..+|..-|.++.+  .|.+|..+...++.+|+
T Consensus       218 -------~l~~~l~~--~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~Ps--TGYs~~~~~~~a~~ia~  286 (374)
T PF05834_consen  218 -------RLRRYLER--LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPS--TGYSFARIQRQADAIAD  286 (374)
T ss_pred             -------HHHHHHHH--cCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCc--ccHHHHHHHHHHHHHHH
Confidence                   11234443  366777888888899998522111111  111223233333222  23345555666667777


Q ss_pred             HHHh
Q psy3952         239 ELRR  242 (252)
Q Consensus       239 ~i~~  242 (252)
                      .+.+
T Consensus       287 ~l~~  290 (374)
T PF05834_consen  287 ALAK  290 (374)
T ss_pred             HHhh
Confidence            6664

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK10015 oxidoreductase; Provisional

Probab=97.86  E-value=0.00077  Score=61.01  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=47.5

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      |.+.|++.|++++.+++|+++..+++++. |.++++ ++.|+.||.|.|.++ .+++.+|.
T Consensus       114 L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~-~i~A~~VI~AdG~~s-~v~~~lg~  172 (429)
T PRK10015        114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDD-ILEANVVILADGVNS-MLGRSLGM  172 (429)
T ss_pred             HHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCe-EEECCEEEEccCcch-hhhcccCC
Confidence            35678889999999999999988777765 666655 899999999999976 47777775

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.79  E-value=7.1e-05  Score=65.58  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~   60 (252)
                      ...+++.||+++++++|.++++++.++.|.|++|.+|+||.+|+|+|.-|          -.+++.+|.
T Consensus       118 l~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~  186 (408)
T COG2081         118 LKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGH  186 (408)
T ss_pred             HHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCC
Confidence            45788999999999999999999988999999996799999999999544          347778885

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.78  E-value=3.3e-05  Score=62.13  Aligned_cols=50  Identities=26%  Similarity=0.433  Sum_probs=39.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|.+++++++|+++.+.+++|.|++.++.++.|++||+|+|.++.
T Consensus        90 ~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   90 EYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             HHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence            45778899999999999999999889999988878999999999998754

...

>PRK06834 hypothetical protein; Provisional

Probab=97.73  E-value=0.00013  Score=67.17  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=50.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++.+++|++++.+++++.|++.+|.+++|++||.|.|.+| .+.+++|+.
T Consensus       107 ~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S-~vR~~lgi~  165 (488)
T PRK06834        107 AEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS-LVRKAAGID  165 (488)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC-CcHhhcCCC
Confidence            45677889999999999999998888888877776899999999999999 477788863

>PLN02463 lycopene beta cyclase

Probab=97.71  E-value=0.0019  Score=58.71  Aligned_cols=50  Identities=14%  Similarity=0.186  Sum_probs=42.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+.+.|++++ .++|++|+..++++.|++++|.++.|+.||.|.|..+.
T Consensus       121 l~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        121 LERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             HHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            455677899997 47999999988888899888878999999999999875

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.71  E-value=8.1e-05  Score=66.75  Aligned_cols=67  Identities=27%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCCCCCCceeee
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSLEPAIVPF   69 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~~~~~~~~p~   69 (252)
                      .+.++++|++++++++|++|+.++++ +.|+|+++..+.||.||+|+|.-|          -.+++.+|.. -.+..|.
T Consensus       116 ~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~-i~~~~Pa  193 (409)
T PF03486_consen  116 LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHT-ITPPYPA  193 (409)
T ss_dssp             HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT---EEEEEEE
T ss_pred             HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCc-EecCCCc
Confidence            45678999999999999999987777 889994444999999999999765          5677888853 2344443

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07233 hypothetical protein; Provisional

Probab=97.70  E-value=0.0053  Score=55.17  Aligned_cols=50  Identities=26%  Similarity=0.256  Sum_probs=40.1

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      |++.+++.|++|+.+++|++|+.+++++.+.+.++..++||+||+|+.+.
T Consensus       204 l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        204 LAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            34567788999999999999998888776444444489999999999864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.69  E-value=0.0002  Score=64.08  Aligned_cols=59  Identities=14%  Similarity=0.298  Sum_probs=50.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++++++|++++.++++|.|++.+|.+++||.||.|.|.|| .+.+.+|+.
T Consensus       119 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S-~vR~~lg~~  177 (405)
T PRK05714        119 LERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS-AVRRLAGCA  177 (405)
T ss_pred             HHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc-hhHHhcCCC
Confidence            34566789999999999999998888988888876799999999999999 577777763

>TIGR00275 flavoprotein, HI0933 family

Probab=97.68  E-value=0.00029  Score=63.14  Aligned_cols=69  Identities=28%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCCCCCCceeeeee
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSLEPAIVPFRG   71 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~~~~~~~~p~~g   71 (252)
                      .+.+++.|++++++++|++++.+++.|.|+++.+ ++.||.||+|+|.++          -.+++++|.. -.+..|...
T Consensus       112 ~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~-~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~-i~~~~P~l~  189 (400)
T TIGR00275       112 LNELKELGVEILTNSKVKSIKKDDNGFGVETSGG-EYEADKVILATGGLSYPQLGSTGDGYEIAESLGHT-IVPPVPALV  189 (400)
T ss_pred             HHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCc-EEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCC-EecccceEe
Confidence            4567788999999999999988777888888655 899999999999966          5788888863 234555443


Q ss_pred             E
Q psy3952          72 E   72 (252)
Q Consensus        72 ~   72 (252)
                      .
T Consensus       190 ~  190 (400)
T TIGR00275       190 P  190 (400)
T ss_pred             E
Confidence            3

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.65  E-value=0.0034  Score=55.74  Aligned_cols=59  Identities=19%  Similarity=0.307  Sum_probs=47.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|...+.+++|++++.++++|.|++++|.+++||.||.|.|.+|. +.+.+|+.
T Consensus       118 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~g~~  176 (388)
T PRK07494        118 EARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP-VREAAGIG  176 (388)
T ss_pred             HHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch-hHHhcCCC
Confidence            345666654448899999999988889998888868999999999999985 66777763

>TIGR02730 carot_isom carotene isomerase

Probab=97.50  E-value=0.00022  Score=65.61  Aligned_cols=52  Identities=15%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      |++.++++|++|+++++|++|..++++ +.|.+.+|.++.||+||+|+|+|..
T Consensus       235 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~  287 (493)
T TIGR02730       235 LVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT  287 (493)
T ss_pred             HHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence            467789999999999999999887665 4588888867999999999999863

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK09126 hypothetical protein; Provisional

Probab=97.49  E-value=0.0053  Score=54.58  Aligned_cols=55  Identities=11%  Similarity=0.175  Sum_probs=46.5

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      +..|++++.+++|++++.+++.+.|++++|.+++||.||.|.|.+|. +.+.+|+.
T Consensus       122 ~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~g~~  176 (392)
T PRK09126        122 QQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA-TRRQLGIG  176 (392)
T ss_pred             hCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch-hhHhcCCC
Confidence            34699999999999999888888888777778999999999999885 66777753

>PRK08244 hypothetical protein; Provisional

Probab=97.49  E-value=0.008  Score=55.35  Aligned_cols=58  Identities=24%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEE--eCCC-cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTIS--TKQG-DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t~~g-~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|++++.+++|++++.++++++|+  +.+| .+++||+||.|.|.+|. +.+++|+
T Consensus       107 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~-vR~~lgi  167 (493)
T PRK08244        107 EEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI-VRKQAGI  167 (493)
T ss_pred             HHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH-HHHhcCC
Confidence            355777899999999999999888887654  3345 37999999999999984 7777775

>PRK07190 hypothetical protein; Provisional

Probab=97.42  E-value=0.00083  Score=61.77  Aligned_cols=59  Identities=15%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++.+++|++++.+++++.+.+.+|.+++|++||.|.|.+| .+.+.+|++
T Consensus       116 ~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S-~vR~~lgi~  174 (487)
T PRK07190        116 DDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS-FVRNHFNVP  174 (487)
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH-HHHHHcCCC
Confidence            35677889999999999999998888877766676899999999999987 466777763

>PRK06847 hypothetical protein; Provisional

Probab=97.37  E-value=0.00064  Score=60.07  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|++++.+++|++++.+++++.|.+.+|.++.||.||.|.|.|+..-..+.+.
T Consensus       114 ~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~  172 (375)
T PRK06847        114 ADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPD  172 (375)
T ss_pred             HHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCC
Confidence            45567789999999999999988888888888887899999999999999654444443

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.36  E-value=0.0007  Score=59.98  Aligned_cols=66  Identities=14%  Similarity=0.241  Sum_probs=49.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh----------HHHHHHcCCCCCCceeeee
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA----------DEMALKSGCSLEPAIVPFR   70 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws----------~~l~~~~g~~~~~~~~p~~   70 (252)
                      ...++++|++|+++++|++|  ++++|.|.+..+ ..++|++||+|+|.-|          -.+++.+|.. -.+..|.-
T Consensus        93 ~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~-i~~~~PaL  169 (376)
T TIGR03862        93 LKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS-VAPFAPAN  169 (376)
T ss_pred             HHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc-ccCCcCee
Confidence            45788999999999999999  334588876432 2699999999999865          4778888863 33445543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06184 hypothetical protein; Provisional

Probab=97.30  E-value=0.0011  Score=61.08  Aligned_cols=59  Identities=17%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEe---CCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++.+++|++++.++++++|..   +++.+++||+||.|.|.+|. +.+++|+.
T Consensus       116 ~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~-vR~~lgi~  177 (502)
T PRK06184        116 RERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF-VRKALGIG  177 (502)
T ss_pred             HHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH-HHHhCCCC
Confidence            4567778999999999999998888877654   44557999999999999995 67778763

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.10  E-value=0.0017  Score=57.90  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+.+. +++++++++|++++.+++++.|.+.+|.++.||.||.|.|.||..-..+.|.
T Consensus       116 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~  175 (396)
T PRK08163        116 LEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD  175 (396)
T ss_pred             HHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC
Confidence            3455555 4999999999999988888888887886799999999999999765444453

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.10  E-value=0.0015  Score=55.00  Aligned_cols=55  Identities=15%  Similarity=0.173  Sum_probs=40.9

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCC-eE-EEEeC-----------CCcEEEcCEEEEcCCCChHHHH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPE-SV-TISTK-----------QGDHLESSYALVCAGLQADEMA   55 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~-~~-~V~t~-----------~g~~i~A~~VV~AaG~ws~~l~   55 (252)
                      |.+.|+++|++++++++|+++..+++ ++ .|.++           +..+++|+.||+|+|.|+....
T Consensus       110 L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~  177 (257)
T PRK04176        110 LAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVS  177 (257)
T ss_pred             HHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHH
Confidence            35678899999999999999987554 43 23221           1237999999999999997443

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.07  E-value=0.0014  Score=60.46  Aligned_cols=51  Identities=25%  Similarity=0.418  Sum_probs=43.5

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      |++.++++|++|+++++|++|..++++ +.|++.+|.++.||.||+|+++..
T Consensus       225 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~  276 (502)
T TIGR02734       225 MAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH  276 (502)
T ss_pred             HHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence            356788899999999999999987766 568888876799999999999854

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.04  E-value=0.0017  Score=61.12  Aligned_cols=57  Identities=16%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE---EEeCCC-cEEEc-CEEEEcCCCChHHHHHHc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT---ISTKQG-DHLES-SYALVCAGLQADEMALKS   58 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~---V~t~~g-~~i~A-~~VV~AaG~ws~~l~~~~   58 (252)
                      .+.|++.|++|+++++|+++..+++++.   +.++++ ..+.| +.||+|+|.|+..+..+.
T Consensus       224 ~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~  285 (581)
T PRK06134        224 LKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARRA  285 (581)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHHH
Confidence            4678899999999999999987766643   344445 24789 999999999997665443

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.98  E-value=0.071  Score=47.78  Aligned_cols=58  Identities=12%  Similarity=0.149  Sum_probs=41.4

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEE---cCCeEEEE--eC-------CCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKE---NPESVTIS--TK-------QGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~---~~~~~~V~--t~-------~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      |++.|+++|++++.++ +.+++.   .++.+.|+  +.       +..+++|+.||.|.|..| .+.+.+|.
T Consensus        99 L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~~g~  168 (398)
T TIGR02028        99 LRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKEIDA  168 (398)
T ss_pred             HHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHHhCC
Confidence            3566888999998875 777753   23445543  22       223799999999999988 57788875

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.90  E-value=0.097  Score=47.74  Aligned_cols=59  Identities=12%  Similarity=0.064  Sum_probs=42.2

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEc---CCeEEEEe---------CCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKEN---PESVTIST---------KQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~---~~~~~V~t---------~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      |.+.|++.|++++++ .|++++..   ++.+.|+.         +++.+++|+.||-|-|.+| .+++.+|..
T Consensus       138 L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~lg~~  208 (450)
T PLN00093        138 LRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKDIDAG  208 (450)
T ss_pred             HHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHHhCCC
Confidence            356788899999875 58888743   23455543         2224799999999999988 577777763

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.87  E-value=0.0034  Score=56.04  Aligned_cols=56  Identities=27%  Similarity=0.478  Sum_probs=46.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALK   57 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~   57 (252)
                      .+..+++|++|+++++|.+|+..++.+ .|.+.+|.++.||+||+|-|--+.....+
T Consensus       180 ~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~  236 (486)
T COG2509         180 REYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEM  236 (486)
T ss_pred             HHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHH
Confidence            356778999999999999999988754 47888887999999999999877655443

>PRK07588 hypothetical protein; Provisional

Probab=96.77  E-value=0.0046  Score=55.05  Aligned_cols=47  Identities=13%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      ..|++++++++|++++.++++|.|++.+|.+++||.||.|.|.+|..
T Consensus       114 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        114 DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV  160 (391)
T ss_pred             hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence            45899999999999999888899988888779999999999999853

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.74  E-value=0.0061  Score=54.10  Aligned_cols=58  Identities=19%  Similarity=0.430  Sum_probs=48.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++.+++|++++.+++.+.|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       191 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl  249 (377)
T PRK04965        191 HRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGL  249 (377)
T ss_pred             HHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCC
Confidence            45678899999999999998877777888877878999999999999875 57677775

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.71  E-value=0.0049  Score=52.37  Aligned_cols=49  Identities=18%  Similarity=0.331  Sum_probs=42.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|+++++ ++|++++..++.|.|++.+|.++.+|+||+|+|.+..
T Consensus        65 ~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        65 EQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR  113 (300)
T ss_pred             HHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence            457788999998 8999999888889888877768999999999999753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01810 betA choline dehydrogenase

Probab=96.68  E-value=0.0043  Score=57.72  Aligned_cols=57  Identities=16%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             HHH-hCCcEEEeCceeEEEEEcCCeEE-EEeC-CC---cEEEcCEEEEcCCC-ChHHHHHHcCC
Q psy3952           4 EFC-ELGGEIRLNQQVESFKENPESVT-ISTK-QG---DHLESSYALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         4 ~a~-~~G~~i~~~~~V~~i~~~~~~~~-V~t~-~g---~~i~A~~VV~AaG~-ws~~l~~~~g~   60 (252)
                      .|+ +.|++|+++|.|++|..++++++ |+.. .+   ..+.|+.||+|||+ ++..|+...|+
T Consensus       202 ~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI  265 (532)
T TIGR01810       202 PAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI  265 (532)
T ss_pred             hhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence            344 55899999999999998876543 5432 22   12589999999999 89999887765

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK08013 oxidoreductase; Provisional

Probab=96.64  E-value=0.012  Score=52.77  Aligned_cols=59  Identities=8%  Similarity=0.057  Sum_probs=48.7

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++. |++++.+++|++++.+++++.|+..+|.+++||.||-|-|.+| .+.+.+|++
T Consensus       118 ~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S-~vR~~~~~~  177 (400)
T PRK08013        118 WQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS-WLRNKADIP  177 (400)
T ss_pred             HHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc-HHHHHcCCC
Confidence            3455564 8999999999999988888888877777899999999999998 466777763

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.58  E-value=0.0057  Score=55.39  Aligned_cols=51  Identities=18%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-Ce---EEEEeCCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ES---VTISTKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~---~~V~t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++++++++|+++..++ ++   +.+.+.++.  .+.|+.||+|+|.|+.
T Consensus       137 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       137 YKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            456888999999999999999854 43   334555552  3789999999999986

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.53  E-value=0.0058  Score=55.83  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=39.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe--CCC--cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+.+++.|++++++++|+++..+++++. |.+  .+|  ..+.|+.||+|+|.++
T Consensus       138 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        138 YRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             HHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            4567889999999999999998777653 443  222  3689999999999875

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.49  E-value=0.0035  Score=55.56  Aligned_cols=48  Identities=31%  Similarity=0.485  Sum_probs=40.5

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .+...|.+|+.+++|++|+.++++++|.+.+|.++.||+||+|+.+..
T Consensus       218 ~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  218 AAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred             HHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence            445568899999999999999999999988887899999999988765

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.48  E-value=0.014  Score=51.94  Aligned_cols=52  Identities=10%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .|++++.+++|++++.++++++|++.+|.+++||.||.|-|.+|. +.+.+|+
T Consensus       124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~-vR~~~gi  175 (384)
T PRK08849        124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ-VRQLAGI  175 (384)
T ss_pred             CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch-hHHhcCC
Confidence            479999999999999988888888888878999999999999984 5566665

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.46  E-value=0.32  Score=43.36  Aligned_cols=57  Identities=19%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeC-CCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           2 GEEFCELG-GEIRLNQQVESFKENPESVTISTK-QGDHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~-~g~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      .+.+.+.+ ++++.+++|+.++.+++.+.|+.+ +|.+++||.||-|=|.+|. +-+.++
T Consensus       111 ~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~-vR~~~~  169 (387)
T COG0654         111 LEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA-VRRAAG  169 (387)
T ss_pred             HHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH-HHHhcC
Confidence            34566665 899999999999999988777666 8878999999999999884 556666

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.45  E-value=0.0082  Score=54.33  Aligned_cols=51  Identities=18%  Similarity=0.113  Sum_probs=39.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc--CCeEE-EEe-CCCcEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN--PESVT-IST-KQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~--~~~~~-V~t-~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+.++++|++|+++++|++|..+  ++.+. |.+ .++..+.|+.||+|+|.++.
T Consensus       130 ~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       130 YSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            45688999999999999999876  34443 444 33347999999999998764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=96.41  E-value=0.022  Score=50.98  Aligned_cols=57  Identities=9%  Similarity=0.098  Sum_probs=47.1

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+.+ .|++++.+++|++++.+++.+.|++.+|.+++||.||-|-|.+|. +.+.+|.
T Consensus       119 ~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~-vR~~~~~  176 (405)
T PRK08850        119 EQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW-LRRQMDI  176 (405)
T ss_pred             HHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh-hHHHcCC
Confidence            34444 489999999999999888888888888878999999999999874 6677775

>PRK09897 hypothetical protein; Provisional

Probab=96.38  E-value=0.0095  Score=55.33  Aligned_cols=49  Identities=14%  Similarity=0.071  Sum_probs=40.0

Q ss_pred             hHHHhCC--cEEEeCceeEEEEEcCCeEEEEeCC-CcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELG--GEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G--~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|  ++++.+++|++++..+++|.|.+.+ |..+.||+||+|+|...
T Consensus       115 ~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        115 DQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW  166 (534)
T ss_pred             HHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence            4556777  7888899999999988889998754 34799999999999743

>PRK06996 hypothetical protein; Provisional

Probab=96.32  E-value=0.023  Score=50.82  Aligned_cols=60  Identities=10%  Similarity=0.070  Sum_probs=46.7

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      |.+.+++.|+++..+++|++++..+++|+|+..+|   .+++||.||.|-|.-+..+-+.++.
T Consensus       121 L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~  183 (398)
T PRK06996        121 LARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGD  183 (398)
T ss_pred             HHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCC
Confidence            34667888999999999999998888888875533   4799999999999743334466665

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.28  E-value=0.024  Score=52.97  Aligned_cols=58  Identities=22%  Similarity=0.452  Sum_probs=45.4

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeEEEE--eCCCc-EEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESVTIS--TKQGD-HLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~--t~~g~-~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      +.+++. |++++.+++|++++.+++++.+.  +.+|. +++||+||.|.|.+|. +.+.+|+.
T Consensus       133 ~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~lg~~  194 (547)
T PRK08132        133 ERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP-LREMLGLE  194 (547)
T ss_pred             HHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHcCCC
Confidence            445554 79999999999999888877643  34453 6999999999999986 76777763

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.25  E-value=0.02  Score=51.16  Aligned_cols=57  Identities=21%  Similarity=0.392  Sum_probs=45.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH-HHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-MALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~-l~~~~g~   60 (252)
                      +.++++|++++++++|++++. ++.+.|.+.+|.++.||.||+|+|...+. +++.+|+
T Consensus       194 ~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl  251 (396)
T PRK09754        194 QRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQLAREANL  251 (396)
T ss_pred             HHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCC
Confidence            346788999999999999976 45567777777689999999999998754 5555554

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.14  E-value=0.055  Score=50.46  Aligned_cols=57  Identities=16%  Similarity=0.395  Sum_probs=45.1

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+.+ .|++++.+++|++++.++++++|+..  +|  .+++||+||-|-|.+|. +-+.+|+
T Consensus       121 ~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~-vR~~lg~  182 (538)
T PRK06183        121 AGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF-VRRTLGV  182 (538)
T ss_pred             HHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh-HHHHcCC
Confidence            33444 49999999999999998888876543  45  46999999999999885 6666675

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.14  E-value=0.017  Score=51.85  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=37.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-E--E-eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-I--S-TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V--~-t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.++++|++|+.+++|+++..++++++ |  . ..+|  ..|.|+.||+|+|.++.
T Consensus       148 ~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  148 AKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            5678899999999999999999888754 3  3 2345  35889999999999996

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.12  E-value=0.03  Score=50.17  Aligned_cols=57  Identities=14%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeEEEEeC--CC-cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESVTISTK--QG-DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~--~g-~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+++. |++++.+++|++++.+++++.|+..  ++ .+++||.||-|.|.+| .+.+.++.
T Consensus       129 ~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S-~vR~~~~~  189 (415)
T PRK07364        129 EFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS-PIRQAAGI  189 (415)
T ss_pred             HHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc-hhHHHhCC
Confidence            344454 8999999999999988887776643  33 3599999999999999 46677765

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.09  E-value=0.3  Score=43.39  Aligned_cols=60  Identities=15%  Similarity=0.355  Sum_probs=39.9

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA   79 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~   79 (252)
                      +..+..+++|+++  +.+++++ + +|.+++|+.||.|.|..+..... .+      .+...|..+.+..+
T Consensus       100 ~~~i~~~~~V~~v--~~~~v~l-~-dg~~~~A~~VI~A~G~~s~~~~~-~~------~Q~f~G~~~r~~~p  159 (370)
T TIGR01789       100 PEGVILGRKAVGL--DADGVDL-A-PGTRINARSVIDCRGFKPSAHLK-GG------FQVFLGREMRLQEP  159 (370)
T ss_pred             cccEEecCEEEEE--eCCEEEE-C-CCCEEEeeEEEECCCCCCCcccc-ce------eeEEEEEEEEEcCC
Confidence            4447778999988  3445666 4 45589999999999988643321 12      34466777776543

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.08  E-value=0.01  Score=54.65  Aligned_cols=49  Identities=27%  Similarity=0.349  Sum_probs=43.1

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~   49 (252)
                      |++.++++|++|+++++|++|..++++ +++.+.+|..++||.||.++..
T Consensus       230 L~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         230 LAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            467889999999999999999998875 6788888767999999999988

>PLN02612 phytoene desaturase

Probab=96.08  E-value=0.014  Score=54.82  Aligned_cols=49  Identities=22%  Similarity=0.411  Sum_probs=39.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      ++..++.|++|+++++|++|+.++++  +.|.+.+|..+.||+||+|+.++
T Consensus       315 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~  365 (567)
T PLN02612        315 VDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD  365 (567)
T ss_pred             HHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH
Confidence            45566789999999999999986554  34777677679999999998763

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.012  Score=50.84  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=43.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM   54 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l   54 (252)
                      .++++..|+++.. ..|..++..++.++|.|++| +++|+.||+|+|.....+
T Consensus        68 ~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~-~~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          68 KEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG-TYEAKAVIIATGAGARKL  118 (305)
T ss_pred             HHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC-eEEEeEEEECcCCcccCC
Confidence            4567788999987 78888887766788999999 799999999999987654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.07  E-value=0.015  Score=53.22  Aligned_cols=50  Identities=16%  Similarity=0.194  Sum_probs=40.0

Q ss_pred             hHHHhCCcE--EEeCceeEEEEEcCCeEEEEeCCC----cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGE--IRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~--i~~~~~V~~i~~~~~~~~V~t~~g----~~i~A~~VV~AaG~ws~   52 (252)
                      ..|+..|..  |+++++|++++..+++|.|++.++    .+..+|.||+|+|.++.
T Consensus       119 ~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        119 DFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             HHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence            456777888  899999999999888899887532    13578999999998753

>PRK06126 hypothetical protein; Provisional

Probab=96.06  E-value=0.018  Score=53.67  Aligned_cols=57  Identities=19%  Similarity=0.416  Sum_probs=44.7

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEEEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVTIST---KQG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+++ .|++++++++|++++.+++++++..   .+|  .++.||+||.|.|++|. +.+.+|+
T Consensus       134 ~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~lgi  196 (545)
T PRK06126        134 EHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA-VRRSLGI  196 (545)
T ss_pred             HHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH-HHHhcCC
Confidence            44554 4899999999999998888766542   234  36999999999999995 7777775

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.02  E-value=0.014  Score=53.29  Aligned_cols=51  Identities=14%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCe-E-EEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPES-V-TISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      |.+.|+++||++++++ |+++..++++ + .|++.+|.+++||.||-|+|.-+.
T Consensus       160 L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  160 LRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            4577899999999985 7777776554 3 488888878999999999999764

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=96.00  E-value=0.0098  Score=53.06  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++|+++++|++|+.+++++++. +.+|.++.||+||+|+-++.
T Consensus       205 ~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       205 RWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence            34557799999999999999988876532 23454799999999977664

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=95.95  E-value=0.02  Score=52.94  Aligned_cols=51  Identities=16%  Similarity=0.116  Sum_probs=40.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE---EEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV---TISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++++++++|++|..+++++   .+.+.++  .++.|+.||+|+|.|+.
T Consensus       197 ~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        197 LKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             HHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            456788999999999999998776654   3444443  26999999999998874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.92  E-value=0.021  Score=51.83  Aligned_cols=50  Identities=22%  Similarity=0.350  Sum_probs=43.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.++++|++++++++|++++.+++.+.|.++++ ++.+|.|++|+|.+.+.
T Consensus       207 ~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        207 TILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence            457788999999999999998777778888778 79999999999998764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.90  E-value=0.029  Score=50.89  Aligned_cols=57  Identities=28%  Similarity=0.433  Sum_probs=45.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++.+++|++++.+++.+.+.++++ ++.||.||+|+|...+ .+++..|+
T Consensus       199 ~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl  256 (444)
T PRK09564        199 EELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDTGL  256 (444)
T ss_pred             HHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhcCc
Confidence            456789999999999999976544455777777 8999999999998854 56666664

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.86  E-value=0.026  Score=52.40  Aligned_cols=49  Identities=14%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+++...++.+.|.+.+|..+.|+.||+|+|...
T Consensus       274 ~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        274 EHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            4577889999999999999988778888887776899999999999854

>PRK08401 L-aspartate oxidase; Provisional

Probab=95.84  E-value=0.021  Score=52.24  Aligned_cols=50  Identities=12%  Similarity=0.005  Sum_probs=39.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      .+.+++.|++++++ .|+.+..+++++. |.++.. .+.|+.||+|+|.|+..
T Consensus       127 ~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~-~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        127 YKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGE-LLKFDATVIATGGFSGL  177 (466)
T ss_pred             HHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCE-EEEeCeEEECCCcCcCC
Confidence            45677889999875 7888877666654 666444 79999999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=95.82  E-value=0.026  Score=50.97  Aligned_cols=50  Identities=22%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+.++++|++++.+++|++++.+++++. |.+.+|  ..++||.||+|+|...
T Consensus       266 ~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        266 RRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence            4567789999999999999998777665 445444  3599999999999864

>PRK05868 hypothetical protein; Validated

Probab=95.81  E-value=0.026  Score=50.01  Aligned_cols=52  Identities=12%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS   58 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~   58 (252)
                      ...|++++++++|++++.++++++|+..+|.+++||.||-|-|.+|. +.+++
T Consensus       115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~-vR~~~  166 (372)
T PRK05868        115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN-VRRLV  166 (372)
T ss_pred             ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch-HHHHh
Confidence            35699999999999999888888888888778999999999999984 44444

>PRK14727 putative mercuric reductase; Provisional

Probab=95.81  E-value=0.025  Score=52.01  Aligned_cols=50  Identities=22%  Similarity=0.312  Sum_probs=43.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++.|++++++++|++++.+++.+.|.++++ ++.||.||+|+|.+.+.
T Consensus       236 ~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        236 ACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence            456788999999999999987777788888888 89999999999999764

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=95.77  E-value=0.029  Score=50.98  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCC-e-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPE-S-VTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~-~-~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      |++.++..|++++.+++|++|..+++ + +.|.+.+|+++.|+.||.....|..
T Consensus       238 l~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        238 FSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            35667889999999999999988753 3 5688888878999999998887754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.73  E-value=0.031  Score=51.83  Aligned_cols=49  Identities=14%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+++..+++.+.|.+.+|..+.+|++|+|+|...
T Consensus       275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            4567789999999999999887777888887776799999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07121 hypothetical protein; Validated

Probab=95.72  E-value=0.024  Score=52.19  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE-EEEe--CCC-cEEEc-CEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV-TIST--KQG-DHLES-SYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~V~t--~~g-~~i~A-~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+++++|+++..++ +++ .|..  ..+ ..+.| +.||+|+|.|+.
T Consensus       184 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        184 AKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            456788999999999999998764 443 2432  222 35889 999999998873

>TIGR00292 thiazole biosynthesis enzyme

Probab=95.71  E-value=0.034  Score=46.75  Aligned_cols=51  Identities=16%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCC--eEE-EEeC-----------CCcEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPE--SVT-ISTK-----------QGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~--~~~-V~t~-----------~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+.|+++|++++++++|+++..+++  ++. |.++           +..++.|+.||.|+|..+.
T Consensus       107 ~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~  171 (254)
T TIGR00292       107 ASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE  171 (254)
T ss_pred             HHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence            4678889999999999999987665  332 4332           1237999999999998874

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=95.68  E-value=0.037  Score=52.09  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--eCCC-cEEEcC-EEEEcCCCChHHHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--TKQG-DHLESS-YALVCAGLQADEMA   55 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t~~g-~~i~A~-~VV~AaG~ws~~l~   55 (252)
                      .+.++++|++|+.+++|+++..+++++. |.  ..++ ..+.|+ .||+|+|.|+....
T Consensus       221 ~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~  279 (574)
T PRK12842        221 AKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSHDLA  279 (574)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHH
Confidence            3457789999999999999998777643 43  3334 247885 69999999985553

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.66  E-value=0.033  Score=50.82  Aligned_cols=51  Identities=22%  Similarity=0.362  Sum_probs=42.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.++++|++++.+++|++++.+++++.|++.+|.++.+|.||+|+|...+.
T Consensus       224 ~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        224 YHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence            456788999999999999987777777777666689999999999987653

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.65  E-value=0.029  Score=52.87  Aligned_cols=52  Identities=15%  Similarity=0.160  Sum_probs=39.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-CCC--cEEEc-CEEEEcCCCChHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLES-SYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-~~g--~~i~A-~~VV~AaG~ws~~   53 (252)
                      .+.++++|++++++++|+++..+++++. |.+ .+|  ..+.| +.||+|+|.++..
T Consensus       228 ~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n  284 (578)
T PRK12843        228 LYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH  284 (578)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence            4567889999999999999987666543 443 233  24776 6899999999853

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.60  E-value=0.021  Score=49.38  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=44.3

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEE--eC-CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTIS--TK-QG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t~-~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      |.+.+++.|+++..+++|++++.+++++++.  .. +|  .+++||.||-|-|.+|. +.+.++.
T Consensus       117 L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l~~  180 (356)
T PF01494_consen  117 LREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK-VRKQLGI  180 (356)
T ss_dssp             HHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H-HHHHTTG
T ss_pred             hhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc-hhhhccc
Confidence            3466788899999999999999888876533  22 23  36999999999999984 6667765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02268 probable polyamine oxidase

Probab=95.59  E-value=0.029  Score=50.74  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=38.8

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ..|++|+.+++|++|...+++|+|++.+|.++.||+||+|.-+..
T Consensus       208 ~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~  252 (435)
T PLN02268        208 AKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGV  252 (435)
T ss_pred             hccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHH
Confidence            457789999999999998888999988876799999999985543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=95.56  E-value=0.019  Score=49.05  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=40.9

Q ss_pred             HHHhC-CcEEEeCceeEEEEEc--CCeE---EEEeCCC----cEEEcCEEEEcCCC-ChHHHHHHcCC
Q psy3952           4 EFCEL-GGEIRLNQQVESFKEN--PESV---TISTKQG----DHLESSYALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         4 ~a~~~-G~~i~~~~~V~~i~~~--~~~~---~V~t~~g----~~i~A~~VV~AaG~-ws~~l~~~~g~   60 (252)
                      .|.++ |++|+++|.|++|..+  ++++   .+...++    ..+.|+.||+|||+ .+..|+...|+
T Consensus       201 ~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  201 PALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            44555 9999999999999654  4443   3344444    35789999999997 47788887775

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.55  E-value=0.038  Score=49.00  Aligned_cols=57  Identities=9%  Similarity=0.081  Sum_probs=46.8

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++. +++++++++|+++..+++++.|..+++ +++||.||-|-|.+|. +.+.++.
T Consensus       111 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~-vR~~l~~  168 (374)
T PRK06617        111 LSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK-VRSHYFA  168 (374)
T ss_pred             HHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch-hHHhcCC
Confidence            3455565 489999999999998888888888888 9999999999999984 5566664

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.53  E-value=0.027  Score=51.81  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeE--EEEeCC----CcEEEcCEEEEcCCCCh
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESV--TISTKQ----GDHLESSYALVCAGLQA   51 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~--~V~t~~----g~~i~A~~VV~AaG~ws   51 (252)
                      |++.++++|++|+++++|++|..++++.  .+.++.    +.++.||.||.++.++.
T Consensus       238 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~  294 (492)
T TIGR02733       238 LVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS  294 (492)
T ss_pred             HHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence            3566778899999999999999887642  222222    13799999999998853

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK11445 putative oxidoreductase; Provisional

Probab=95.52  E-value=0.048  Score=47.93  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=43.9

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEe-CCCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~--~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+.|++++.++.|++++.++++|.|.+ .+|.  +++|+.||.|.|..|. +.++++.
T Consensus       108 ~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~-vr~~l~~  165 (351)
T PRK11445        108 LIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM-VRRHLYP  165 (351)
T ss_pred             HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH-HhHHhcC
Confidence            3467899999999999998888888764 4552  6999999999999984 5565553

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.51  E-value=0.039  Score=52.31  Aligned_cols=50  Identities=10%  Similarity=0.083  Sum_probs=37.8

Q ss_pred             hHHHhCC-cEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELG-GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G-~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++| ++++++++|+++..+++++. |   .+.+|  ..+.|+.||+|+|.|+.
T Consensus       140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            4566665 99999999999987666542 3   33344  25899999999999885

>KOG0404|consensus

Probab=95.50  E-value=0.011  Score=48.16  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM   54 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l   54 (252)
                      |.+++.+.|.+|++. .|.+++.+..-++|.|+.+ .+.||.||+|+|+-+..|
T Consensus        76 mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~-~v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   76 MRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR-PVTADAVILATGASAKRL  127 (322)
T ss_pred             HHHHHHhhcceeeee-ehhhccccCCCeEEEecCC-ceeeeeEEEecccceeee
Confidence            456788899999875 6999998888899999998 999999999999988765

>PLN02676 polyamine oxidase

Probab=95.50  E-value=0.027  Score=51.88  Aligned_cols=42  Identities=24%  Similarity=0.432  Sum_probs=38.0

Q ss_pred             cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952          10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .+|+.+++|++|..++++++|+|.+|.++.||+||+|.....
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v  286 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV  286 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence            679999999999999889999999987799999999997654

>PRK06116 glutathione reductase; Validated

Probab=95.47  E-value=0.038  Score=50.30  Aligned_cols=50  Identities=18%  Similarity=0.338  Sum_probs=41.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++.+++|++++.++++ +.|.+.+|.++.+|.||+|+|.-.+
T Consensus       216 ~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        216 EEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence            4567889999999999999876554 7777777768999999999997643

>PRK12839 hypothetical protein; Provisional

Probab=95.46  E-value=0.039  Score=51.87  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=39.6

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEc-CCeEE-E--EeCCCc-EE-EcCEEEEcCCCChHHH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKEN-PESVT-I--STKQGD-HL-ESSYALVCAGLQADEM   54 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V--~t~~g~-~i-~A~~VV~AaG~ws~~l   54 (252)
                      |++.|++.|++|+.+|+|+++..+ ++++. |  .+.+|. .+ .++.||+|+|.|+...
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~  279 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDV  279 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCH
Confidence            356788899999999999999765 45432 3  444552 24 4589999999999744

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.44  E-value=0.057  Score=51.48  Aligned_cols=54  Identities=20%  Similarity=0.325  Sum_probs=44.1

Q ss_pred             hCCcE-EEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           7 ELGGE-IRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         7 ~~G~~-i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      ..|.. ++.+++|++++.++++++|.+.+|.++.||.||.|.|.||..-..+++.
T Consensus       203 alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~  257 (668)
T PLN02927        203 AVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGR  257 (668)
T ss_pred             hCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence            34444 5678899999988888998888886899999999999999766656664

>TIGR00551 nadB L-aspartate oxidase

Probab=95.44  E-value=0.028  Score=51.76  Aligned_cols=52  Identities=6%  Similarity=-0.004  Sum_probs=39.2

Q ss_pred             hhHHHh-CCcEEEeCceeEEEEEcCCeEE-EEe--CCC-cEEEcCEEEEcCCCChHH
Q psy3952           2 GEEFCE-LGGEIRLNQQVESFKENPESVT-IST--KQG-DHLESSYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g-~~i~A~~VV~AaG~ws~~   53 (252)
                      .+.+++ .|++++++++|+++..+++.+. |.+  .++ ..+.|+.||+|+|.|+..
T Consensus       135 ~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       135 VKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence            345666 6999999999999987766543 433  222 368999999999999863

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=95.39  E-value=0.096  Score=47.50  Aligned_cols=58  Identities=14%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             hHHHhCC---cEEEeCceeEEEEEc-------CCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           3 EEFCELG---GEIRLNQQVESFKEN-------PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         3 ~~a~~~G---~~i~~~~~V~~i~~~-------~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      +.+++.+   ++++.+++|++++..       +++++|++.+|++++|+.||-|-|.+|. +-+.+|+.
T Consensus       125 ~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~-vR~~~gi~  192 (437)
T TIGR01989       125 NRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN-VRKAANID  192 (437)
T ss_pred             HHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh-hHHHcCCC
Confidence            4455554   899999999999752       3567888888878999999999999984 66677763

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK14694 putative mercuric reductase; Provisional

Probab=95.37  E-value=0.048  Score=49.91  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++.|++++.+++|++++.+++.+.+.++++ ++.+|.||+|+|...+.
T Consensus       226 ~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        226 AAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence            456788999999999999988777677777777 89999999999998754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=95.35  E-value=0.041  Score=52.57  Aligned_cols=51  Identities=12%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE---EEEe-CCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV---TIST-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|++++.|+++..+++++   .+.+ .+|  ..|.|+.||+|+|.++.
T Consensus       165 ~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        165 DNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             HHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence            456778899999999999998877653   3443 456  24679999999999874

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=95.34  E-value=0.033  Score=50.75  Aligned_cols=40  Identities=10%  Similarity=0.207  Sum_probs=35.2

Q ss_pred             cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952          10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~   49 (252)
                      ++|+++++|++|+..+++|.|.+.+|..+.||.||+|+-+
T Consensus       239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~  278 (463)
T PRK12416        239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH  278 (463)
T ss_pred             ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence            5799999999999998889998877757999999999843

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=95.34  E-value=0.05  Score=51.05  Aligned_cols=51  Identities=14%  Similarity=0.113  Sum_probs=39.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.|+++..+++++. |   ...+|  ..+.|+.||+|+|.++.
T Consensus       136 ~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       136 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            3457778999999999999988777653 3   22355  25899999999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.31  E-value=0.039  Score=50.15  Aligned_cols=50  Identities=18%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-E-EEEeCCCc-----EEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-V-TISTKQGD-----HLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~V~t~~g~-----~i~A~~VV~AaG~ws   51 (252)
                      ++.+++.|++|+++++|++|...+++ + .|++.+|.     ++.||.||.|+.+..
T Consensus       220 ~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~  276 (453)
T TIGR02731       220 VDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI  276 (453)
T ss_pred             HHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence            45566789999999999999865443 4 36664443     689999999997753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=95.22  E-value=0.048  Score=49.60  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=36.6

Q ss_pred             cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952          10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      ++|+.+++|++|+..+++|+|++++|.++.||+||+|+-+.
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK  278 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence            78999999999999888899988887689999999998764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.21  E-value=0.036  Score=52.19  Aligned_cols=51  Identities=10%  Similarity=0.084  Sum_probs=39.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.|+++..+++++. |   .+.+|  ..+.|+.||+|+|.++.
T Consensus       142 ~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        142 VNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             HHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            4557788999999999999987666542 2   33444  35899999999999874

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.19  E-value=0.056  Score=49.05  Aligned_cols=50  Identities=14%  Similarity=0.048  Sum_probs=36.2

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeE-EEE-eCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESV-TIS-TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~-~V~-t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++ .|++|+++++|++|..+++++ .|. +.++  ..+.|+.||+|+|.++.
T Consensus       136 ~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        136 KKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             HHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence            34544 599999999999998766653 232 2233  25899999999998653

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.18  E-value=0.049  Score=48.90  Aligned_cols=44  Identities=14%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      ...++.+++|++|+..+++|+|.+.+|.+++||.||.|.|.||.
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            45678899999999888889988777768999999999999985

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.16  E-value=0.055  Score=51.57  Aligned_cols=50  Identities=6%  Similarity=0.057  Sum_probs=38.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++|++++.|+++..+++++. |.  . .+|  ..|.|+.||+|+|.++.
T Consensus       178 ~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        178 RQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence            356788999999999999987666543 43  2 244  25899999999999874

>KOG4254|consensus

Probab=95.13  E-value=0.022  Score=51.04  Aligned_cols=52  Identities=17%  Similarity=0.150  Sum_probs=46.1

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +++.|++.|++|++...|.+|.-++++. .|...+|+++.++.||--|++|-.
T Consensus       270 ia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T  322 (561)
T KOG4254|consen  270 IAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT  322 (561)
T ss_pred             HHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHH
Confidence            3678999999999999999999888775 499999988999999999999964

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=95.07  E-value=0.065  Score=48.75  Aligned_cols=50  Identities=12%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++.+++|++++..++++.|.+.+|.++.+|.||+|+|.-.+
T Consensus       215 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       215 RNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence            34667899999999999998776667777766767999999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.99  E-value=0.067  Score=48.74  Aligned_cols=50  Identities=24%  Similarity=0.376  Sum_probs=41.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|.+.+|  .++.+|.||+|+|...+
T Consensus       219 ~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       219 KALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence            456788999999999999988777777776555  47999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.98  E-value=0.055  Score=50.71  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=38.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-CCC--cEEEcC-EEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESS-YALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-~~g--~~i~A~-~VV~AaG~ws~   52 (252)
                      .+.+++.|++++++++|+++..+++++. |.. .+|  ..+.|+ .||+|+|.++.
T Consensus       215 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        215 LEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            4568889999999999999998777653 332 233  348885 69999999875

>PRK07804 L-aspartate oxidase; Provisional

Probab=94.92  E-value=0.067  Score=49.99  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=38.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE---EEE-----eCCC-cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV---TIS-----TKQG-DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~---~V~-----t~~g-~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++++.++.|+++..++ +++   .+.     +.++ ..+.|+.||+|+|.++.
T Consensus       151 ~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        151 DAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             HHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            356778899999999999998765 343   333     2333 36899999999999874

>PRK06753 hypothetical protein; Provisional

Probab=94.90  E-value=0.081  Score=46.64  Aligned_cols=51  Identities=14%  Similarity=0.240  Sum_probs=43.0

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+++++++|++++.+++++.|++.+|.++.||.||-|-|.+|. +.+.++.
T Consensus       110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~-vR~~~~~  160 (373)
T PRK06753        110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK-VRQSVNA  160 (373)
T ss_pred             CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH-HHHHhCC
Confidence            46899999999999888889998888878999999999999884 5555553

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.84  E-value=0.069  Score=48.73  Aligned_cols=50  Identities=22%  Similarity=0.468  Sum_probs=40.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++.+++|++++.+++++.|.+.+|   .++.+|.||+|+|...+
T Consensus       221 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        221 RALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence            446788999999999999998777777765443   47999999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.84  E-value=0.073  Score=49.91  Aligned_cols=48  Identities=17%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++ +++|++++.+++.+.|.+.+| .+.+++||+|+|.+..
T Consensus        68 ~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~  115 (555)
T TIGR03143        68 QQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR  115 (555)
T ss_pred             HHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence            45677899986 678999988777778888888 8999999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07236 hypothetical protein; Provisional

Probab=94.78  E-value=0.09  Score=46.75  Aligned_cols=49  Identities=12%  Similarity=0.204  Sum_probs=41.5

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS   58 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~   58 (252)
                      +.+++.+++|++++.++++++|+..+|.+++||.||.|-|.+|. +.+.+
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~-vR~~l  160 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST-VRAQL  160 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch-HHHHh
Confidence            46799999999999988888888888878999999999999995 44443

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=94.75  E-value=0.075  Score=48.81  Aligned_cols=50  Identities=12%  Similarity=0.184  Sum_probs=37.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC--CeE----EEEeCCC---cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP--ESV----TISTKQG---DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~--~~~----~V~t~~g---~~i~A~~VV~AaG~ws   51 (252)
                      ++..++.|++|+.+++|++|+.++  +++    .|.+.+|   .++.||+||+|+.+|.
T Consensus       226 ~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~  284 (474)
T TIGR02732       226 LEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG  284 (474)
T ss_pred             HHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence            456778999999999999998754  222    2344322   3589999999999884

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02507 glutathione reductase

Probab=94.75  E-value=0.09  Score=48.63  Aligned_cols=50  Identities=10%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|.+.+|.++.+|.|++|.|.-.+
T Consensus       252 ~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        252 RNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence            35678899999999999998776777788777767999999999997654

>PRK07045 putative monooxygenase; Reviewed

Probab=94.75  E-value=0.09  Score=46.71  Aligned_cols=53  Identities=8%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             hCCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCChHHHHHH-cCC
Q psy3952           7 ELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALK-SGC   60 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~-~g~   60 (252)
                      ..|++++.+++|++++..+++  +.|++++|.++.||.||-|-|.+|. +.+. ++.
T Consensus       119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~-vR~~~~~~  174 (388)
T PRK07045        119 LPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM-IRDDVLRM  174 (388)
T ss_pred             CCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH-HHHHhhCC
Confidence            458999999999999986554  3577777878999999999999884 4442 443

>TIGR00136 gidA glucose-inhibited division protein A

Probab=94.65  E-value=0.077  Score=49.92  Aligned_cols=47  Identities=11%  Similarity=0.133  Sum_probs=35.6

Q ss_pred             HHHhC-CcEEEeCceeEEEEEc-CCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           4 EFCEL-GGEIRLNQQVESFKEN-PES-VTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~-G~~i~~~~~V~~i~~~-~~~-~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .+++. |++++++ .|+++..+ ++. +.|.|.+|..+.|+.||+|+|.|.
T Consensus       105 ~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136       105 ALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            34555 7888764 68887665 444 458888887899999999999993

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=94.65  E-value=0.093  Score=49.32  Aligned_cols=51  Identities=4%  Similarity=-0.010  Sum_probs=39.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|++++.|+++..+++++. |   .+.+|  ..|.|+.||+|+|.++.
T Consensus       126 ~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       126 YQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             HHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence            3557788999999999999987666543 3   23345  35899999999999874

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=94.63  E-value=0.11  Score=47.02  Aligned_cols=40  Identities=15%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             EEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952          11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus        11 ~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +|+++++|++|+.++++|+|.+.+|.++.||+||+|+-+.
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~  274 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP  274 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence            7999999999999888898888777689999999998764

>PRK08275 putative oxidoreductase; Provisional

Probab=94.61  E-value=0.093  Score=49.16  Aligned_cols=51  Identities=10%  Similarity=0.167  Sum_probs=38.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEE-E---EeCCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVT-I---STKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V---~t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.|+++..+ ++++. |   .+.+|.  .+.|+.||+|+|..+.
T Consensus       144 ~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        144 YRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            45677889999999999999876 55442 3   234552  4899999999999764

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.60  E-value=0.077  Score=50.05  Aligned_cols=50  Identities=8%  Similarity=0.112  Sum_probs=37.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEc-CCeEE-E--EeCCC-cEEEcCE-EEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKEN-PESVT-I--STKQG-DHLESSY-ALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V--~t~~g-~~i~A~~-VV~AaG~ws~   52 (252)
                      +.+++.|++|+++++|++|..+ ++++. |  ..+.+ ..|.|++ ||+|+|.++.
T Consensus       221 ~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~  276 (584)
T PRK12835        221 LALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH  276 (584)
T ss_pred             HHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence            4567889999999999999986 45543 3  33222 3488984 9999999973

>PRK13748 putative mercuric reductase; Provisional

Probab=94.56  E-value=0.097  Score=49.02  Aligned_cols=50  Identities=20%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++.|++++++++|++++.+++.+.+.++++ ++.+|.|++|+|...+.
T Consensus       318 ~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        318 AAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence            456788999999999999988777777888778 89999999999987654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=94.56  E-value=0.09  Score=49.52  Aligned_cols=47  Identities=13%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             HHhC-CcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH
Q psy3952           5 FCEL-GGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         5 a~~~-G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+. |++++. +.|+++..+++++. |.|.+|..+.|+.||+|+|.|++
T Consensus       110 L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~  158 (618)
T PRK05192        110 LENQPNLDLFQ-GEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLR  158 (618)
T ss_pred             HHcCCCcEEEE-eEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence            4434 888864 67999988777764 88888878999999999998864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=94.46  E-value=0.11  Score=49.43  Aligned_cols=51  Identities=8%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEE-cCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKE-NPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.++++.. +++++. |   ...+|  ..+.|+.||+|+|.++.
T Consensus       173 ~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        173 YGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence            4557788999999999999887 455543 3   23445  35899999999999864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.42  E-value=0.11  Score=48.97  Aligned_cols=51  Identities=10%  Similarity=0.045  Sum_probs=38.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC----CeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP----ESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~----~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.|+++..++    +++. |   ...+|  ..|.|+.||+|+|.++.
T Consensus       147 ~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        147 YQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence            455778899999999999998654    4432 3   22345  25899999999999874

>PRK02106 choline dehydrogenase; Validated

Probab=94.39  E-value=0.1  Score=48.93  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=40.0

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEE-EEe--CCC--cEEEcCEEEEcCCCC-hHHHHHHcCC
Q psy3952           7 ELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g--~~i~A~~VV~AaG~w-s~~l~~~~g~   60 (252)
                      +.+++|+.++.|++|..++++++ |+.  ..+  ..+.|+.||+|||++ +..|+...|+
T Consensus       213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGI  272 (560)
T PRK02106        213 RPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGI  272 (560)
T ss_pred             CCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence            45799999999999998866543 443  322  246899999999987 6677766565

>PRK07512 L-aspartate oxidase; Provisional

Probab=94.36  E-value=0.072  Score=49.42  Aligned_cols=49  Identities=10%  Similarity=0.057  Sum_probs=36.3

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeEE-EE--eCCC-cEEEcCEEEEcCCCCh
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESVT-IS--TKQG-DHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~-V~--t~~g-~~i~A~~VV~AaG~ws   51 (252)
                      +.+++. |+++++++.|+++..+++++. |.  +..+ ..+.|+.||+|+|.++
T Consensus       144 ~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        144 AAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            455554 999999999999887666543 43  3333 2589999999999975

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.34  E-value=0.11  Score=48.68  Aligned_cols=52  Identities=12%  Similarity=0.067  Sum_probs=37.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-E--EeCCC-cEEEc-CEEEEcCCCChHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-I--STKQG-DHLES-SYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V--~t~~g-~~i~A-~~VV~AaG~ws~~   53 (252)
                      .+.+++.|++|+++++|+++..+++++. |  ..+.+ ..+.| +.||+|+|.++..
T Consensus       224 ~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n  280 (564)
T PRK12845        224 FAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD  280 (564)
T ss_pred             HHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence            3457789999999999999987666543 3  33333 23666 5799999999853

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.29  E-value=0.12  Score=48.94  Aligned_cols=51  Identities=6%  Similarity=0.066  Sum_probs=39.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESVT-IS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.|+++..++ +++. |.   +.+|  ..+.|+.||+|+|.++.
T Consensus       156 ~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        156 YQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             HHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence            345778899999999999998765 5443 32   3455  36899999999999875

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.25  E-value=0.12  Score=48.56  Aligned_cols=50  Identities=14%  Similarity=0.194  Sum_probs=37.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-CCC--cEEEcC-EEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESS-YALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-~~g--~~i~A~-~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++|..+++++. |.. .+|  ..|.|+ .||+|+|.+..
T Consensus       216 ~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        216 IGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            456788999999999999988766653 332 233  348897 59999998864

>PRK08071 L-aspartate oxidase; Provisional

Probab=94.22  E-value=0.078  Score=49.15  Aligned_cols=45  Identities=11%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             CCcEEEeCceeEEEEEcCCeEE-EEe--CCC--cEEEcCEEEEcCCCChH
Q psy3952           8 LGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .|+++++++.|+++..+++.+. |.+  .+|  ..+.|+.||+|+|.++.
T Consensus       142 ~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        142 PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            5999999999999987666543 433  233  25899999999999875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.22  E-value=0.13  Score=46.59  Aligned_cols=49  Identities=18%  Similarity=0.202  Sum_probs=40.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++.+++|++++.+++.+.+.++.+ ++.+|.||+|+|.-.+
T Consensus       206 ~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~-~i~~D~viva~G~~p~  254 (438)
T PRK07251        206 QYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE-TYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe-EEEcCEEEEeeCCCCC
Confidence            346788999999999999988766676666544 8999999999998754

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.21  E-value=0.12  Score=48.62  Aligned_cols=50  Identities=12%  Similarity=0.007  Sum_probs=38.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--e-CCC--cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+.+++.|+++++++.++++..+++++. |.  . .+|  ..+.|+.||+|+|.++
T Consensus       143 ~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        143 FERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            3456678999999999999998777653 43  2 233  3589999999999976

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.19  E-value=0.13  Score=47.00  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=42.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +..+++|++++++++|++++.+++++.|.+.+|.++.+|.|++|+|.-.+.
T Consensus       226 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        226 EVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence            346688999999999999987777777776667689999999999987653

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=94.18  E-value=0.11  Score=46.76  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=38.7

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCC-CcEEEcCEEEEcCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAG   48 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~A~~VV~AaG   48 (252)
                      +++.|-.|..+++|.+|.+.+++|+|++.+ + ++.||++|++-=
T Consensus       216 a~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~-~~~ad~~i~tiP  259 (450)
T COG1231         216 AKQLGTRILLNEPVRRIDQDGDGVTVTADDVG-QYVADYVLVTIP  259 (450)
T ss_pred             HHHhhceEEecCceeeEEEcCCeEEEEeCCcc-eEEecEEEEecC
Confidence            567799999999999999999999999998 7 999999998843

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.13  E-value=0.11  Score=46.44  Aligned_cols=51  Identities=20%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc-EEEcCEEEEcCCCChHHHHHHc
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADEMALKS   58 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~-~i~A~~VV~AaG~ws~~l~~~~   58 (252)
                      ..+++|+++++++.|++++.++    |++.+|. +|.|+.+|=|||.-++.+.+.+
T Consensus       218 ~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         218 ALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence            5678999999999999997554    5555564 4999999999999999998764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.00  E-value=0.16  Score=47.77  Aligned_cols=51  Identities=12%  Similarity=0.069  Sum_probs=38.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.++++..+ ++++. |.   ..+|  ..|.|+.||+|+|.++.
T Consensus       133 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        133 YQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence            34567789999999999999875 55542 32   3445  35899999999999885

>PRK06475 salicylate hydroxylase; Provisional

Probab=93.86  E-value=0.18  Score=45.02  Aligned_cols=57  Identities=21%  Similarity=0.409  Sum_probs=42.6

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEEEEe---CCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+.+ .|++++.+++|++++.++++++|+.   ++++++.||.||-|-|.+|. +-+.++.
T Consensus       115 ~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~-vR~~~~~  175 (400)
T PRK06475        115 DACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM-LRAKAGF  175 (400)
T ss_pred             HHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh-HHhhcCC
Confidence            34444 4899999999999998888777653   33447999999999999984 4444543

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.86  E-value=0.13  Score=47.98  Aligned_cols=50  Identities=10%  Similarity=0.004  Sum_probs=37.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EE-EE--e-CCC--cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VT-IS--T-KQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~-V~--t-~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+.+++.|+++++++.|+++..++++ +. |.  . .+|  ..+.|+.||+|+|.++
T Consensus       141 ~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        141 MEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            34566789999999999999876554 42 32  2 455  3589999999999976

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=93.83  E-value=0.18  Score=45.01  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             HHHh-CCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCC
Q psy3952           4 EFCE-LGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~   49 (252)
                      .+++ .+.+|++ .+|++|..+++++. |.|.+|..+.|+.||+|+|.
T Consensus       104 ~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  104 KLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            3444 4788865 68999999888865 99999988999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02487 zeta-carotene desaturase

Probab=93.79  E-value=0.15  Score=47.94  Aligned_cols=50  Identities=6%  Similarity=0.173  Sum_probs=38.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC--Ce----EEEEe---CCCcEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP--ES----VTIST---KQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~--~~----~~V~t---~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++..+++|++|+.+++|.+|+.++  ++    +.|++   .++..+.||.||.|+++|.
T Consensus       302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~  360 (569)
T PLN02487        302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPG  360 (569)
T ss_pred             HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHH
Confidence            456789999999999999999863  22    23555   3344689999999999984

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=93.74  E-value=0.18  Score=44.95  Aligned_cols=58  Identities=16%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEE-cCCeEEEEe-CCC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKE-NPESVTIST-KQG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~V~t-~~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+.+.|++++.+++|++++. +++...|+. .+|  .+++||.||-|-|.+| .+.++++.
T Consensus       110 l~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S-~vR~~~~~  171 (392)
T PRK08243        110 MAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG-VSRASIPA  171 (392)
T ss_pred             HHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC-chhhhcCc
Confidence            3456778999999999999986 455555543 345  3699999999999998 45566654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.66  E-value=0.22  Score=43.88  Aligned_cols=54  Identities=19%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.++++|++++.+++|++++.  +  .|.+.+|.++.+|.||+|+|...+......|+
T Consensus       199 ~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl  252 (364)
T TIGR03169       199 RLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARAPPWLAESGL  252 (364)
T ss_pred             HHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCChhhHHHHcCC
Confidence            456788999999999998853  2  45666676899999999999887766555553

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.60  E-value=0.12  Score=34.98  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=28.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG   35 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g   35 (252)
                      +.++++|+++++++.|++++.++++++|++.+|
T Consensus        48 ~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   48 EYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            457788999999999999999887776877765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=93.60  E-value=0.17  Score=47.01  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             CCcEEEeCceeEEEEEcCCeEE-EE-eCCC--cEEEcC-EEEEcCCCCh
Q psy3952           8 LGGEIRLNQQVESFKENPESVT-IS-TKQG--DHLESS-YALVCAGLQA   51 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~-V~-t~~g--~~i~A~-~VV~AaG~ws   51 (252)
                      .|++|+++++|+++..+++.+. |. ..+|  ..|.|+ .||+|||.+.
T Consensus       187 ~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        187 PNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             CCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence            5999999999999988776653 32 2233  358896 6999999985

>PRK10262 thioredoxin reductase; Provisional

Probab=93.51  E-value=0.26  Score=42.64  Aligned_cols=48  Identities=13%  Similarity=0.267  Sum_probs=38.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+...+.++..+ +|++++..++.|++.++.+ .+.+|+||+|+|.+..
T Consensus        71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~  118 (321)
T PRK10262         71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASAR  118 (321)
T ss_pred             HHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCC
Confidence            3455677777664 6888888888888887767 8999999999999853

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=93.31  E-value=0.25  Score=47.17  Aligned_cols=51  Identities=4%  Similarity=0.052  Sum_probs=38.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS--T-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+.+.|++|+.++.++++..+ ++++. |.  . .+|  ..+.|+.||+|+|.++.
T Consensus       194 ~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  251 (635)
T PLN00128        194 YGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR  251 (635)
T ss_pred             HHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence            34577789999999999998776 45542 32  2 345  35899999999999874

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.24  E-value=0.26  Score=46.57  Aligned_cols=51  Identities=10%  Similarity=0.026  Sum_probs=38.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|+++++++.|+++..+ ++++. |.   ..+|  ..+.|+.||+|+|.++.
T Consensus       150 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             HHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            34567789999999999999875 55542 32   3345  35889999999999875

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.15  E-value=0.3  Score=44.08  Aligned_cols=46  Identities=15%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCC-CcEEE--cCEEEEcCCCCh
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQ-GDHLE--SSYALVCAGLQA   51 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~--A~~VV~AaG~ws   51 (252)
                      ++.|++++.+++|++++.+++.+.+.+.. +.++.  +|+||+|+|...
T Consensus        55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP  103 (427)
T ss_pred             HhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence            67899999899999999877777776542 33678  999999999854

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.12  E-value=0.35  Score=43.82  Aligned_cols=49  Identities=16%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC-CCcEEE--cCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK-QGDHLE--SSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~-~g~~i~--A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++|+.++..+.+... +|.+++  +|++|+|+|...
T Consensus        64 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         64 EEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             HHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence            3466789999999999999988877777652 243566  999999999854

>PLN02568 polyamine oxidase

Probab=93.10  E-value=0.25  Score=46.13  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=37.2

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +..|+++++|++|+..+++|+|.+.+|.++.||+||+|.-++.
T Consensus       254 ~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~v  296 (539)
T PLN02568        254 PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGV  296 (539)
T ss_pred             CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHH
Confidence            3469999999999999889999988886899999999987643

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.07  E-value=0.26  Score=46.56  Aligned_cols=49  Identities=8%  Similarity=0.019  Sum_probs=37.0

Q ss_pred             HHHhC-CcEEEeCceeEEEEEcCCeEE----EEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           4 EFCEL-GGEIRLNQQVESFKENPESVT----ISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~-G~~i~~~~~V~~i~~~~~~~~----V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+. |+++++++.|+++..+++++.    +...+|  ..+.|+.||+|+|.++.
T Consensus       142 ~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        142 TSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             HhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence            34443 899999999999988766643    233455  36899999999999874

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=93.07  E-value=0.26  Score=44.53  Aligned_cols=54  Identities=15%  Similarity=0.303  Sum_probs=42.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +..++.|++++.+++|+++..  +  .|.+.+|.++.||.||.|+|.-.+.+.+.+|+
T Consensus       236 ~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l  289 (424)
T PTZ00318        236 RRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKV  289 (424)
T ss_pred             HHHHHCCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCCcchhhhcCC
Confidence            456789999999999999863  2  35566776899999999999877777666654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.04  E-value=0.27  Score=44.93  Aligned_cols=50  Identities=30%  Similarity=0.491  Sum_probs=38.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEe--CCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIST--KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t--~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +..+++|++++.+++|++++.+++.+.|..  .+|  .++.+|.||+|+|.-.+
T Consensus       221 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        221 KQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence            456788999999999999987766665443  244  36999999999997654

>PRK07846 mycothione reductase; Reviewed

Probab=93.04  E-value=0.27  Score=44.83  Aligned_cols=47  Identities=21%  Similarity=0.354  Sum_probs=39.6

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+.|++++.+++|++++.+++++.|.+.+|.++.+|.|++|+|.-.+
T Consensus       217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence            35689999999999998777677777777768999999999998764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.96  E-value=0.3  Score=43.33  Aligned_cols=44  Identities=7%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++++|++++.+++|++++.+..  .|.++.+ .+.+|+||+|+|...
T Consensus        68 ~~~~gv~~~~~~~V~~id~~~~--~v~~~~~-~~~yd~LVlATG~~~  111 (377)
T PRK04965         68 AEQFNLRLFPHTWVTDIDAEAQ--VVKSQGN-QWQYDKLVLATGASA  111 (377)
T ss_pred             HHhCCCEEECCCEEEEEECCCC--EEEECCe-EEeCCEEEECCCCCC
Confidence            5678999999999999987654  4556555 899999999999864

>PRK07538 hypothetical protein; Provisional

Probab=92.92  E-value=0.23  Score=44.52  Aligned_cols=56  Identities=13%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             hHHHh-CCc-EEEeCceeEEEEEcCCeEEEEeCC-----CcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           3 EEFCE-LGG-EIRLNQQVESFKENPESVTISTKQ-----GDHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         3 ~~a~~-~G~-~i~~~~~V~~i~~~~~~~~V~t~~-----g~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      +.+.+ .|. +++.+++|++++.+++++.+...+     +.+++||.||-|-|.+|. +.+.++
T Consensus       110 ~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~-vR~~l~  172 (413)
T PRK07538        110 DAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA-VRAQLY  172 (413)
T ss_pred             HHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH-Hhhhhc
Confidence            34444 475 699999999999877665544322     247999999999999985 444443

>PRK06370 mercuric reductase; Validated

Probab=92.84  E-value=0.33  Score=44.32  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=38.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE--e-CCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS--T-KQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t-~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++++++|.+++..++++.|.  . +++.++.+|.||+|+|.-.+
T Consensus       220 ~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        220 EILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN  272 (463)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence            44678899999999999998876655443  2 33347999999999997654

>PLN02529 lysine-specific histone demethylase 1

Probab=92.76  E-value=0.24  Score=47.88  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=36.0

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      .+..|+++++|++|+..+++|+|+++++ ++.||+||+|.=+.
T Consensus       365 ~~L~IrLnt~V~~I~~~~dGVtV~t~~~-~~~AD~VIVTVPlg  406 (738)
T PLN02529        365 EGVPIFYGKTVDTIKYGNDGVEVIAGSQ-VFQADMVLCTVPLG  406 (738)
T ss_pred             hcCCEEcCCceeEEEEcCCeEEEEECCE-EEEcCEEEECCCHH
Confidence            3667999999999999999999988766 89999999997554

>PRK07208 hypothetical protein; Provisional

Probab=92.76  E-value=0.21  Score=45.67  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=37.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE--EEe--CCC--cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT--IST--KQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~--V~t--~~g--~~i~A~~VV~AaG~ws   51 (252)
                      ++.+++.|++|+++++|++|..+++++.  +..  .+|  ..+.||+||.|+-++.
T Consensus       225 ~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~  280 (479)
T PRK07208        225 AEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE  280 (479)
T ss_pred             HHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence            4556678999999999999999877642  322  234  2589999999988763

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=92.65  E-value=0.22  Score=43.81  Aligned_cols=46  Identities=7%  Similarity=0.044  Sum_probs=36.3

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+++.|++++.+ +|++|+.++.  +|.+.+|.++..|++|+|+|.-..
T Consensus        63 ~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        63 LARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             HHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCCC
Confidence            456789999874 8999987765  466667767999999999998653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=92.64  E-value=0.33  Score=44.78  Aligned_cols=50  Identities=14%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|+++++++.|++++..+++ ..|.+.+|.++.+|.|++|+|.-.+
T Consensus       239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       239 KQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            4577899999999999999876443 5566655658999999999997654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.59  E-value=0.31  Score=45.90  Aligned_cols=49  Identities=10%  Similarity=0.091  Sum_probs=36.6

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEE-E---EeCCCc--EEEcCEEEEcCCCCh
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVT-I---STKQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g~--~i~A~~VV~AaG~ws   51 (252)
                      +.+++ .|+++++++.|+++..+++.+. |   .+.+|.  .+.|+.||+|+|.++
T Consensus       145 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        145 SRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            34444 5999999999999987666542 2   334552  489999999999985

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=92.56  E-value=0.035  Score=50.27  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEE-EE--eCCC-cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVT-IS--TKQG-DHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t~~g-~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      +.+++.|++++.++.|.++.+++++++ |.  +.+| .+|.|+.||-|+|-  ..|+.+.|.+
T Consensus        98 ~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~--g~l~~~aG~~  158 (428)
T PF12831_consen   98 EMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD--GDLAALAGAP  158 (428)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            345678999999999999999887643 44  3323 47999999999994  3577777753

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=92.47  E-value=0.46  Score=42.86  Aligned_cols=56  Identities=25%  Similarity=0.420  Sum_probs=42.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++.+++|++++.++. + +.+.+|.++.+|.||.|+|...+ .+++.+|+
T Consensus       187 ~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl  243 (427)
T TIGR03385       187 EELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSELAKDSGL  243 (427)
T ss_pred             HHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHHHHHhcCc
Confidence            456788999999999999976543 3 33444558999999999998854 45665664

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=92.39  E-value=0.33  Score=46.11  Aligned_cols=49  Identities=10%  Similarity=0.081  Sum_probs=36.2

Q ss_pred             HHHhCCcEEEeCceeEEEEEcC---CeE-EEE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           4 EFCELGGEIRLNQQVESFKENP---ESV-TIS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~---~~~-~V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+++.++++++++.|+++..++   +++ .|.   ..+|  ..+.|+.||+|+|.|+.
T Consensus       135 ~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       135 AAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             HHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            3556678999999999998754   443 232   2344  35899999999999974

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00052 thioredoxin reductase; Provisional

Probab=92.38  E-value=0.38  Score=44.48  Aligned_cols=50  Identities=14%  Similarity=0.082  Sum_probs=40.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++.++.|++++..++.+.|...+|.++.+|.|++|.|.-.+
T Consensus       230 ~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        230 EYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            45678899999999999998766666666666657999999999998764

>TIGR03452 mycothione_red mycothione reductase

Probab=92.33  E-value=0.5  Score=43.10  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=39.1

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+.|++++++++|++++.+++++.|.+.+|.++.+|.|++|+|.-.+
T Consensus       220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence            35689999999999998877777777766767999999999997654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.31  E-value=0.36  Score=47.29  Aligned_cols=46  Identities=13%  Similarity=0.161  Sum_probs=38.3

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .++++|++++.+++|+.|+.+.  ..|.|.+|.++.+|++|+|+|...
T Consensus        63 ~~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        63 WYEKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence            4567899999999999998765  356777776799999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.26  E-value=0.37  Score=43.93  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCC-cEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQG-DHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g-~~i~A~~VV~AaG~ws~~   53 (252)
                      +..++.|++++.++.|++++.++++ +.|...+| ..+.+|.|++|+|.-.+.
T Consensus       215 ~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       215 EEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence            4467889999999999999875443 56666556 469999999999987653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=92.24  E-value=0.43  Score=44.67  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEE-EEe----C-------------CC-cEEEcCEEEEcCCCChH
Q psy3952           7 ELGGEIRLNQQVESFKENPESVT-IST----K-------------QG-DHLESSYALVCAGLQAD   52 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~-V~t----~-------------~g-~~i~A~~VV~AaG~ws~   52 (252)
                      +.|++|+++++++++..+++++. |..    .             ++ ..|.|+.||+|+|.++.
T Consensus       164 ~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~  228 (549)
T PRK12834        164 RGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG  228 (549)
T ss_pred             hCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence            33699999999999988776653 432    1             12 36899999999999974

>TIGR02053 MerA mercuric reductase

Probab=92.24  E-value=0.36  Score=44.07  Aligned_cols=50  Identities=22%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC---CCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++.+.|++.   ++.++.+|.||+|+|.-.+
T Consensus       215 ~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       215 EALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPN  267 (463)
T ss_pred             HHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence            4466889999999999999887666555432   2347999999999997543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.10  E-value=0.39  Score=45.73  Aligned_cols=42  Identities=7%  Similarity=0.089  Sum_probs=32.5

Q ss_pred             cEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCCh
Q psy3952          10 GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      +++++++.|+++..+++.+. |   ...+|  ..+.|+.||+|+|.++
T Consensus       166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence            99999999999987666542 2   22344  2589999999999865

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=92.06  E-value=0.49  Score=43.19  Aligned_cols=50  Identities=12%  Similarity=0.223  Sum_probs=39.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++.+++.+.+.++.+ .++.+|.||+|+|.-.+
T Consensus       219 ~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        219 EKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence            456788999999999999987766666654332 36999999999997654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=92.06  E-value=0.4  Score=43.97  Aligned_cols=50  Identities=22%  Similarity=0.390  Sum_probs=38.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|...  +|  ..+.+|.|++|+|.-.+
T Consensus       232 ~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        232 KAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence            4566789999999999999887666665432  23  36999999999998654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=92.03  E-value=0.29  Score=45.74  Aligned_cols=53  Identities=17%  Similarity=0.260  Sum_probs=38.3

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEc--C--CeEE-EEeC-CC-----cEEEcCEEEEcCCCChHH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKEN--P--ESVT-ISTK-QG-----DHLESSYALVCAGLQADE   53 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~--~--~~~~-V~t~-~g-----~~i~A~~VV~AaG~ws~~   53 (252)
                      |.+.++++||+|+++|+|++|..+  +  +.++ |... +|     ....+|.||+|+|..+..
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence            457789999999999999999875  3  2233 4332 12     236789999999988743

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.89  E-value=0.49  Score=44.75  Aligned_cols=51  Identities=12%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeE-EEE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+.+.|++++.++.++++..+ ++++ .|.   ..+|  ..+.|+.||+|+|.++.
T Consensus       155 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        155 YQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence            34567789999999999999875 4443 232   3345  35889999999999874

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.88  E-value=0.45  Score=46.58  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=45.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +..+++|+++++++.|++|..++....|.+.+|.++.+|.||.|+|.-.+ .+++..|+
T Consensus       190 ~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl  248 (785)
T TIGR02374       190 RELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGI  248 (785)
T ss_pred             HHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCC
Confidence            34678899999999999997655445577777878999999999998753 35555654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=91.73  E-value=0.51  Score=44.55  Aligned_cols=49  Identities=8%  Similarity=-0.053  Sum_probs=37.1

Q ss_pred             HHHh-CCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           4 EFCE-LGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+ .|++++.++.|+++..+++++. |   ...+|  ..+.|+.||+|+|.++.
T Consensus       141 ~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       141 TSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             HHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            4444 4899999999999988776643 2   33455  35899999999999885

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=91.63  E-value=0.48  Score=43.28  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=39.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc--EEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~--~i~A~~VV~AaG~w   50 (252)
                      +..++.|++++++++|+.++..++++.|+..+|.  +++||+|++|+|--
T Consensus       222 ~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         222 KQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             HHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence            4556679999999999999988776777765553  68999999999964

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=91.54  E-value=0.53  Score=42.04  Aligned_cols=46  Identities=9%  Similarity=0.198  Sum_probs=36.9

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+++|++++.+++|+.++.+..  .|.+.+|.++.+|++|+|+|....
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence            4568999999999999987654  355556658999999999998753

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=91.50  E-value=0.5  Score=44.82  Aligned_cols=44  Identities=9%  Similarity=-0.053  Sum_probs=32.9

Q ss_pred             CCcEEEeCceeEEEEEcC-CeEE-EE--e-CCC--cEEEcCEEEEcCCCCh
Q psy3952           8 LGGEIRLNQQVESFKENP-ESVT-IS--T-KQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~-~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .|++++++++|+++..++ +++. |.  . .+|  ..+.|+.||+|+|.++
T Consensus       146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g  196 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG  196 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            489999999999998754 4432 43  2 234  3589999999999975

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=91.50  E-value=0.63  Score=45.95  Aligned_cols=58  Identities=14%  Similarity=0.322  Sum_probs=45.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC--eEEEEeCCCcEEEcCEEEEcCCCChHH-HHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQADE-MALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~--~~~V~t~~g~~i~A~~VV~AaG~ws~~-l~~~~g~   60 (252)
                      +..+++|+++++++.|++|..++.  ...|.+.+|.++.+|.||+|+|.-.+. |++..|+
T Consensus       195 ~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl  255 (847)
T PRK14989        195 RKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGL  255 (847)
T ss_pred             HHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCc
Confidence            456789999999999999976532  345777778789999999999987644 6666665

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=91.39  E-value=0.59  Score=42.44  Aligned_cols=46  Identities=11%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCC-C--cEEEcCEEEEcCCCCh
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQ-G--DHLESSYALVCAGLQA   51 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g--~~i~A~~VV~AaG~ws   51 (252)
                      ++.|++++.+++|++|+.++..+.+.+.+ +  .++.+|++|+|+|...
T Consensus        69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA  117 (438)
T ss_pred             HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence            45799999999999999888878777643 2  2368899999999865

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=91.12  E-value=0.35  Score=44.05  Aligned_cols=42  Identities=26%  Similarity=0.454  Sum_probs=29.8

Q ss_pred             EEeCceeEEEEE--cCCeEEEEeCCCcE--EEcCEEEEcCCCChHH
Q psy3952          12 IRLNQQVESFKE--NPESVTISTKQGDH--LESSYALVCAGLQADE   53 (252)
Q Consensus        12 i~~~~~V~~i~~--~~~~~~V~t~~g~~--i~A~~VV~AaG~ws~~   53 (252)
                      |..++.|+.+..  +++.|.|++++|.+  +.|++||+|+|.++..
T Consensus       101 i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P  146 (443)
T COG2072         101 IRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEP  146 (443)
T ss_pred             EEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCC
Confidence            344555555554  44579999988734  5699999999997744

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=91.08  E-value=0.19  Score=44.19  Aligned_cols=46  Identities=15%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCC----eEEEEe----CCCcEEEcCEEEEcCCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPE----SVTIST----KQGDHLESSYALVCAGL   49 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~----~~~V~t----~~g~~i~A~~VV~AaG~   49 (252)
                      .|++....+..+++|++|+...+    .|.|+|    +++.++.|+.||+|+|.
T Consensus       104 va~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~  157 (341)
T PF13434_consen  104 VAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG  157 (341)
T ss_dssp             HHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred             HHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence            35556665888999999987553    488887    23458999999999994

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.02  E-value=0.68  Score=42.39  Aligned_cols=50  Identities=18%  Similarity=0.390  Sum_probs=37.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE--e---CCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS--T---KQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t---~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++.+++++.+.  +   .++..+.+|.|++|+|.-.+
T Consensus       223 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        223 KALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY  277 (466)
T ss_pred             HHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence            45668899999999999998766665543  2   22346999999999997643

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.97  E-value=0.62  Score=46.00  Aligned_cols=46  Identities=9%  Similarity=0.145  Sum_probs=37.8

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ..+++|++++.+++|++|+.+.  ..|.|.+|.++.+|++|+|+|.+.
T Consensus        68 ~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         68 FYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence            3567899999999999998754  346777776799999999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=90.78  E-value=0.66  Score=42.75  Aligned_cols=50  Identities=16%  Similarity=0.094  Sum_probs=38.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|+++++++.+++++..++.+.|+..++   .++.+|.|++|.|.-.+
T Consensus       228 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       228 EHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence            456788999999999999987666655543332   36999999999997654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=90.68  E-value=0.52  Score=42.80  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      ++..++|+.+++|+.|.++..++.+.+.+|..+.||.||+++=++  .+..+++
T Consensus       223 ~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~--~l~~ll~  274 (444)
T COG1232         223 EKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLP--ELARLLG  274 (444)
T ss_pred             HHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHH--HHHHHcC
Confidence            344666999999999999977777766666689999999997655  3555554

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=90.66  E-value=0.47  Score=44.26  Aligned_cols=48  Identities=25%  Similarity=0.363  Sum_probs=34.6

Q ss_pred             HHhCCc--EEEeCceeEEEEEcC-----CeEEEEeCC-C--cEEEcCEEEEcCCCChH
Q psy3952           5 FCELGG--EIRLNQQVESFKENP-----ESVTISTKQ-G--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         5 a~~~G~--~i~~~~~V~~i~~~~-----~~~~V~t~~-g--~~i~A~~VV~AaG~ws~   52 (252)
                      |+..|.  .|+++|+|+++++.+     ++|.|+|.+ |  .+-..|.||+|+|.++.
T Consensus        94 a~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen   94 AEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             HHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred             HhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence            444444  688999999999854     469988754 3  23457999999999874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=90.56  E-value=0.93  Score=37.20  Aligned_cols=54  Identities=17%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCC-eEE-EE---e---CCC-----cEEEcCEEEEcCCCChHHHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPE-SVT-IS---T---KQG-----DHLESSYALVCAGLQADEMA   55 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~-~~~-V~---t---~~g-----~~i~A~~VV~AaG~ws~~l~   55 (252)
                      +..|-+.|++|++.+.|+++...++ ++. |.   |   ..+     ..++|+.||-|+|.-+.-..
T Consensus       116 ~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~  182 (262)
T COG1635         116 AARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVS  182 (262)
T ss_pred             HHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHH
Confidence            4567789999999999999876665 432 21   1   112     36999999999999886543

>PLN03000 amine oxidase

Probab=90.50  E-value=0.49  Score=46.46  Aligned_cols=41  Identities=15%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952          10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ..|+.+++|++|+..+++|+|+++++ +++||+||+|.=+..
T Consensus       391 L~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgV  431 (881)
T PLN03000        391 VPILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGV  431 (881)
T ss_pred             CCcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHH
Confidence            35889999999999999999988766 899999999975543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=90.48  E-value=0.76  Score=42.09  Aligned_cols=50  Identities=20%  Similarity=0.300  Sum_probs=37.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEE-cCCeEE-EEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKE-NPESVT-ISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~-~~~~~~-V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++. .++++. +.+.+|  .++.+|.||+|+|.-.+
T Consensus       229 ~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        229 RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence            446788999999999999985 233443 444455  36999999999998654

>PRK07395 L-aspartate oxidase; Provisional

Probab=90.42  E-value=0.45  Score=44.61  Aligned_cols=49  Identities=22%  Similarity=0.188  Sum_probs=34.7

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcC--CeEE-EE-eCCCc--EEEcCEEEEcCCCCh
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENP--ESVT-IS-TKQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~--~~~~-V~-t~~g~--~i~A~~VV~AaG~ws   51 (252)
                      +.+++ .|++|++++.|+++..++  +.+. |. ..+|.  .+.|+.||+|+|.++
T Consensus       142 ~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        142 EQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             HHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence            34444 499999999999998763  4432 32 23442  389999999999964

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=90.36  E-value=0.69  Score=41.24  Aligned_cols=57  Identities=11%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEE-cCCeEEEEeC-CC--cEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKE-NPESVTISTK-QG--DHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~V~t~-~g--~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      .+.+.+.|++++.+++++.+.. +++.+.|+.. +|  .+++||.||-|-|.+|. +.++++
T Consensus       110 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~-VR~~l~  170 (390)
T TIGR02360       110 MEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV-SRASIP  170 (390)
T ss_pred             HHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh-hHHhcC
Confidence            4556778999999998888765 4444455442 45  26999999999999985 555554

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02576 protoporphyrinogen oxidase

Probab=90.31  E-value=0.71  Score=42.44  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             HhCC-cEEEeCceeEEEEEcCCe-EEEE--eCCC-cEEEcCEEEEcCCC
Q psy3952           6 CELG-GEIRLNQQVESFKENPES-VTIS--TKQG-DHLESSYALVCAGL   49 (252)
Q Consensus         6 ~~~G-~~i~~~~~V~~i~~~~~~-~~V~--t~~g-~~i~A~~VV~AaG~   49 (252)
                      +..+ .+|+.+++|++|+..+++ |.|.  +.+| .++.||+||+|.-+
T Consensus       247 ~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~  295 (496)
T PLN02576        247 KRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL  295 (496)
T ss_pred             HhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence            3445 689999999999998776 7654  3344 26999999999743

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.21  E-value=0.32  Score=38.60  Aligned_cols=48  Identities=31%  Similarity=0.500  Sum_probs=37.3

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCe-----EEE---EeCCCcEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPES-----VTI---STKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~-----~~V---~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .++..+++++.+++|.++....+.     +.+   .+.++.++.+|+||+|+|...
T Consensus        67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~  122 (201)
T PF07992_consen   67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP  122 (201)
T ss_dssp             HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred             ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence            456789999888999999988773     222   445555899999999999654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=89.91  E-value=6  Score=35.15  Aligned_cols=71  Identities=11%  Similarity=-0.008  Sum_probs=42.3

Q ss_pred             HHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecCCeEEEeccCCc--cccchHHHHHHHHHHHHhhcccc
Q psy3952         171 NELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSP--AATSSLAIAKHILNELRREFKLD  247 (252)
Q Consensus       171 ~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~~~~~~~G~~~~--G~t~a~~~g~~va~~i~~~~~~~  247 (252)
                      +.+.++|..... -....|- ..|....+...  .+|++  ++|+|+..|+.+.  -|-++...||-+|.++.++|..+
T Consensus       279 ~~L~~lF~~~~~-~~~~~W~-AYP~~~p~~~~--~~~~L--~~glyY~n~iE~~aStME~sai~akNvA~L~~~~~~~~  351 (368)
T PF07156_consen  279 EFLSQLFSSYSE-VKRKEWL-AYPHYSPPEKF--PPFKL--HDGLYYTNAIESAASTMETSAIAAKNVALLIYDRWNGD  351 (368)
T ss_pred             HHHHHHhhccCc-eeeeeEe-CCCCCCCCCCC--CCeEe--eCCeeEchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345556655432 2234673 35543222221  24455  5799999998542  24567888999999998886553

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PLN02661 Putative thiazole synthesis

Probab=88.88  E-value=1.3  Score=38.97  Aligned_cols=46  Identities=11%  Similarity=0.118  Sum_probs=34.2

Q ss_pred             hCCcEEEeCceeEEEEEcCCeE-EEEe-------C-CC------cEEEcCEEEEcCCCChH
Q psy3952           7 ELGGEIRLNQQVESFKENPESV-TIST-------K-QG------DHLESSYALVCAGLQAD   52 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~-~V~t-------~-~g------~~i~A~~VV~AaG~ws~   52 (252)
                      +.|+++++++.|+++..+++++ .|.+       + ++      ..|+|+.||+|+|....
T Consensus       185 ~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        185 RPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             cCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence            4699999999999998877653 2331       1 11      26899999999997653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=88.88  E-value=1.2  Score=40.80  Aligned_cols=48  Identities=17%  Similarity=0.299  Sum_probs=35.2

Q ss_pred             hHHHhCCcEEEeCceeEEEE--EcCCeEEEEeCCCc--EEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFK--ENPESVTISTKQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~--~~~~~~~V~t~~g~--~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.++ ++.++  .+.+.+.|.+.+|.  ++.+|+||+|+|.-.
T Consensus       100 ~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p  151 (466)
T PRK07845        100 ARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP  151 (466)
T ss_pred             HHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence            34567799998864 44443  44566788877774  699999999999864

>PLN02815 L-aspartate oxidase

Probab=88.67  E-value=0.82  Score=43.30  Aligned_cols=50  Identities=12%  Similarity=0.038  Sum_probs=35.4

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEc-CCe---E-EEE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKEN-PES---V-TIS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~-~~~---~-~V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++. |++|++++.++++..+ +++   + .|.   ..+|  ..+.|+.||+|+|.++.
T Consensus       163 ~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        163 EAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             HHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            344444 9999999999998874 331   3 232   3345  35789999999998874

>PRK09077 L-aspartate oxidase; Provisional

Probab=88.53  E-value=1.2  Score=41.61  Aligned_cols=50  Identities=6%  Similarity=0.107  Sum_probs=35.5

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcC------CeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENP------ESVT-IS--T-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~------~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++. |+++++++.|+++..++      +++. |.  . .+|  ..|.|+.||+|+|.++.
T Consensus       146 ~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  208 (536)
T PRK09077        146 ERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK  208 (536)
T ss_pred             HHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence            344444 89999999999987643      4432 32  2 334  35899999999999873

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=88.08  E-value=1.3  Score=45.44  Aligned_cols=45  Identities=18%  Similarity=0.159  Sum_probs=34.4

Q ss_pred             CCcEEEeCceeEEEEEcC-----C----eEE-E--EeC---CC--cEEEcCEEEEcCCCChH
Q psy3952           8 LGGEIRLNQQVESFKENP-----E----SVT-I--STK---QG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~-----~----~~~-V--~t~---~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .|++|+++++|+++..++     +    ++. |  +..   +|  ..|.|+.||+|+|.++.
T Consensus       560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence            599999999999998753     2    332 3  333   45  35899999999999885

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=87.90  E-value=0.73  Score=40.03  Aligned_cols=50  Identities=22%  Similarity=0.251  Sum_probs=42.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      -++.++.|+.+..+-+|.+.+..+++++ |.|.++  ..+.|+..|+|+|..-
T Consensus       265 ~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         265 QRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             HHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence            3567899999999999999999999986 888765  3589999999999863

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=87.88  E-value=1.3  Score=40.20  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++.+++|++++.  .  .|.+.+|..+.+|.|+.|+|.-.+ .+++..|+
T Consensus       197 ~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl  251 (438)
T PRK13512        197 DELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNI  251 (438)
T ss_pred             HHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcCc
Confidence            456788999999999999963  2  355555657999999999997653 34555554

>KOG1346|consensus

Probab=87.85  E-value=0.45  Score=42.58  Aligned_cols=58  Identities=26%  Similarity=0.408  Sum_probs=47.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws-~~l~~~~g~   60 (252)
                      +..++.|+.++-+..|.++.+.-+...+..++|.++.+|.||+|.|--- .+|+...|+
T Consensus       401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL  459 (659)
T KOG1346|consen  401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL  459 (659)
T ss_pred             HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc
Confidence            4567889999999999999887777888999998999999999999763 345554444

>PTZ00058 glutathione reductase; Provisional

Probab=87.59  E-value=1.9  Score=40.59  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEE-eCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTIS-TKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~-t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.++.|.+++.+++ ++.+. ++++.++.+|.|++|+|.-.+
T Consensus       286 ~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        286 NDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence            456788999999999999987543 45544 333446999999999997643

>PLN02976 amine oxidase

Probab=87.45  E-value=1.2  Score=46.16  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CcEEEeCceeEEEEEc----------CCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           9 GGEIRLNQQVESFKEN----------PESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~----------~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +..|+++++|++|...          +++|.|.|.+|.+|.||+||++.=+.
T Consensus       945 ~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLG  996 (1713)
T PLN02976        945 GLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLG  996 (1713)
T ss_pred             hCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHH
Confidence            4569999999999884          35688999888789999999997554

>PLN02546 glutathione reductase

Probab=87.33  E-value=1.8  Score=40.74  Aligned_cols=50  Identities=18%  Similarity=0.313  Sum_probs=39.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcC-CeEEEEeCCCcEEE-cCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLE-SSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~V~t~~g~~i~-A~~VV~AaG~ws~~   53 (252)
                      +..+++|++++.+++|++++..+ +.+.|.++++ ++. +|.||+|.|.-.+.
T Consensus       301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g-~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        301 EQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG-TVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe-EEEecCEEEEeeccccCC
Confidence            45678899999999999998643 4456777777 555 89999999987654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=87.03  E-value=2.2  Score=40.00  Aligned_cols=55  Identities=13%  Similarity=0.154  Sum_probs=40.6

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEE---EEeCCC----cEEEcCEEEEcCCCC-hHHHHHHcCC
Q psy3952           6 CELGGEIRLNQQVESFKENPESVT---ISTKQG----DHLESSYALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~---V~t~~g----~~i~A~~VV~AaG~w-s~~l~~~~g~   60 (252)
                      +..+.+|.+++.|++|..++++++   +...++    ..+.++.||+|||++ +..|+...|+
T Consensus       214 ~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi  276 (542)
T COG2303         214 KRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI  276 (542)
T ss_pred             cCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence            444699999999999999988754   333322    136788999999988 5666666664

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=86.81  E-value=1.8  Score=36.43  Aligned_cols=50  Identities=10%  Similarity=0.165  Sum_probs=35.7

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeEEEEe-----CCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESVTIST-----KQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t-----~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++. |++++.++.+++++.++....|+.     +++.++.+|.||.|+|.-.+
T Consensus       184 ~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~  239 (300)
T TIGR01292       184 DRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPN  239 (300)
T ss_pred             HHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCC
Confidence            445666 999999999999986553222321     23346999999999996553

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02785 Protein HOTHEAD

Probab=86.71  E-value=2.5  Score=40.04  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCC----eE-EEE--eCCCcEE-------EcCEEEEcCCC-ChHHHHHHcCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPE----SV-TIS--TKQGDHL-------ESSYALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~----~~-~V~--t~~g~~i-------~A~~VV~AaG~-ws~~l~~~~g~   60 (252)
                      .+...+++++.++.|++|..+++    +. .|+  ..+|...       .++-||+|||+ .+..|+...|+
T Consensus       229 ~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGI  300 (587)
T PLN02785        229 AGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGI  300 (587)
T ss_pred             hcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCC
Confidence            34467899999999999987642    33 243  3345222       24679999987 46677666554

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=86.52  E-value=1.4  Score=43.14  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             EEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952          11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus        11 ~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .|+++++|+.|...+++|.|.+ +|.+++||+||+|.=+..
T Consensus       448 ~I~ln~~V~~I~~~~dgV~V~~-~G~~~~AD~VIvTvPl~v  487 (808)
T PLN02328        448 PIFYERTVESIRYGVDGVIVYA-GGQEFHGDMVLCTVPLGV  487 (808)
T ss_pred             CcccCCeeEEEEEcCCeEEEEe-CCeEEEcCEEEECCCHHH
Confidence            4889999999999888888854 454899999999976554

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=86.29  E-value=2  Score=39.17  Aligned_cols=50  Identities=14%  Similarity=0.065  Sum_probs=37.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe---EEEE-----------------eCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES---VTIS-----------------TKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~---~~V~-----------------t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|+++++++.++++..++++   +.+.                 ++++.++.||.||.|.|.-.+
T Consensus       319 ~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        319 EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             HHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence            4577899999999999999876543   3332                 123346999999999998665

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=86.03  E-value=1.8  Score=39.15  Aligned_cols=46  Identities=11%  Similarity=0.032  Sum_probs=35.3

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEe--------CCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIST--------KQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t--------~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++..|+++.. .+|++|+.++..+.+.+        ++|.++.+|++|+|+|.-.
T Consensus        72 ~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~  125 (424)
T PTZ00318         72 LAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP  125 (424)
T ss_pred             hccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc
Confidence            4556888765 68999998887776632        3455799999999999964

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=85.99  E-value=2.3  Score=39.06  Aligned_cols=58  Identities=22%  Similarity=0.294  Sum_probs=40.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEE-EE-----eCC-------C--cEEEcCEEEEcCCCChH--HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVT-IS-----TKQ-------G--DHLESSYALVCAGLQAD--EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~-----t~~-------g--~~i~A~~VV~AaG~ws~--~l~~~~g~   60 (252)
                      +.+++.|+++++++.+++|..++++++ |+     ..+       |  .++.+|.||+|.|.-.+  .+++.+|+
T Consensus       337 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl  411 (471)
T PRK12810        337 SNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV  411 (471)
T ss_pred             HHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc
Confidence            456788999999999999976555543 32     111       1  46999999999996653  35544443

>TIGR02462 pyranose_ox pyranose oxidase

Probab=85.96  E-value=1.9  Score=40.36  Aligned_cols=54  Identities=11%  Similarity=0.209  Sum_probs=37.3

Q ss_pred             hCCcEEEeCceeEEEEEcC---CeEE---EEeC-CC--cEEEcCEEEEcCCC-ChHHHHHHcCC
Q psy3952           7 ELGGEIRLNQQVESFKENP---ESVT---ISTK-QG--DHLESSYALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~---~~~~---V~t~-~g--~~i~A~~VV~AaG~-ws~~l~~~~g~   60 (252)
                      .-.++++.++.|++|..++   ++++   +.+. +|  .++.|+.||+|||+ .+..|+...+.
T Consensus       226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~  289 (544)
T TIGR02462       226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGF  289 (544)
T ss_pred             CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCC
Confidence            3359999999999998754   2332   3332 23  45999999999974 56677665543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=85.55  E-value=0.68  Score=39.17  Aligned_cols=48  Identities=15%  Similarity=0.196  Sum_probs=37.5

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcC-CCChHHH
Q psy3952           7 ELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCA-GLQADEM   54 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~Aa-G~ws~~l   54 (252)
                      ....+|+++|+|+.+-..++.|++++++| .+..+|.||+|. -+.+..|
T Consensus       115 AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~L  164 (331)
T COG3380         115 ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATL  164 (331)
T ss_pred             hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhh
Confidence            34677889999999999999999999655 468999999996 3334333

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=85.26  E-value=4.6  Score=38.66  Aligned_cols=58  Identities=16%  Similarity=0.299  Sum_probs=41.5

Q ss_pred             hhHHHhCCc--EEEeCceeEEEEEcCC---eEEEEe--C----CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGG--EIRLNQQVESFKENPE---SVTIST--K----QG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~--~i~~~~~V~~i~~~~~---~~~V~t--~----~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|+  ++..+++|++++.++.   .++|+.  .    +|  .+++|++||=|=|+.|. +-+.+|+
T Consensus       148 ~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-VR~~lgi  218 (634)
T PRK08294        148 LDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-VRKAIGR  218 (634)
T ss_pred             HHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-HHHhcCC
Confidence            345666664  7788999999987642   355443  2    34  47999999999999884 6667776

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=85.20  E-value=2.5  Score=34.64  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=34.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeEE-EEe------CCC-----cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESVT-IST------KQG-----DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~t------~~g-----~~i~A~~VV~AaG~ws~   52 (252)
                      +..|.+.|++|++.+.|+++...+ +++. |.+      ..|     ..++|+.||-|+|.-+.
T Consensus       103 ~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen  103 ASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             HHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred             HHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence            456667999999999999987655 5653 322      122     37999999999999873

>KOG1399|consensus

Probab=84.88  E-value=1.9  Score=39.30  Aligned_cols=47  Identities=17%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             HHhCCc--EEEeCceeEEEEEcC-CeEEEEeCCC----cEEEcCEEEEcCCCCh
Q psy3952           5 FCELGG--EIRLNQQVESFKENP-ESVTISTKQG----DHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~--~i~~~~~V~~i~~~~-~~~~V~t~~g----~~i~A~~VV~AaG~ws   51 (252)
                      |+..+.  .|.++++|..++... +.|+|.+.++    ...-+|.||+|+|-+.
T Consensus       100 A~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  100 AKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             HHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence            444443  688899999999888 7899876432    3688999999999996

>PLN02985 squalene monooxygenase

Probab=84.70  E-value=3.5  Score=38.39  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=37.6

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCe---EEEEeCCCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPES---VTISTKQGD--HLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~---~~V~t~~g~--~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+++. |+++..+ +|+++..+++.   +++.+.+|.  ++.||.||.|.|.+|. +.+.++.
T Consensus       155 ~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~-vR~~l~~  216 (514)
T PLN02985        155 QKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN-LRRSLND  216 (514)
T ss_pred             HHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH-HHHHhcc
Confidence            445554 7888765 67777666554   334444553  3679999999999985 5566654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=83.39  E-value=2.6  Score=36.91  Aligned_cols=51  Identities=12%  Similarity=-0.018  Sum_probs=36.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE--------------------eCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS--------------------TKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--------------------t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.++++|+++++++.+++++.+++...|+                    ++++.++.+|.||.|+|.-.+.
T Consensus       218 ~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~  288 (352)
T PRK12770        218 ERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP  288 (352)
T ss_pred             HHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence            45678899999999999987554322222                    2233479999999999987654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=82.69  E-value=2  Score=38.34  Aligned_cols=44  Identities=11%  Similarity=0.199  Sum_probs=35.7

Q ss_pred             hCCcEEEeCceeEEEEEcCCe-EEEE-----eCCCcEEEcCEEEEcCCCC
Q psy3952           7 ELGGEIRLNQQVESFKENPES-VTIS-----TKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~-~~V~-----t~~g~~i~A~~VV~AaG~w   50 (252)
                      +..+.++..|+|..++.++++ +.+.     |++..++++|.||+|+|..
T Consensus       290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR  339 (436)
T ss_pred             CCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence            457889999999999998866 6653     3444679999999999986

>PRK10262 thioredoxin reductase; Provisional

Probab=82.60  E-value=2.4  Score=36.54  Aligned_cols=51  Identities=12%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeE---EEEeC----CCcEEEcCEEEEcCCCChHHH
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESV---TISTK----QGDHLESSYALVCAGLQADEM   54 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~----~g~~i~A~~VV~AaG~ws~~l   54 (252)
                      ..++.|++++.++.|+++..++++.   ++...    +..++.+|.||.|.|.-.+.-
T Consensus       194 ~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        194 KVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             hccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence            3457899999999999998665433   33322    123699999999999876543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=82.36  E-value=2.8  Score=38.34  Aligned_cols=46  Identities=13%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             HHhCCcEEEeCceeEEEEEc-----CCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKEN-----PESVTISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~-----~~~~~V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++++.+ .++.+...     ++.+.|.+.+|  .++.+|+||+|+|...
T Consensus       102 ~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p  154 (472)
T PRK05976        102 LKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP  154 (472)
T ss_pred             HHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence            45679999886 45555443     33677887666  4699999999999854

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=81.92  E-value=3.6  Score=38.99  Aligned_cols=43  Identities=5%  Similarity=-0.123  Sum_probs=31.7

Q ss_pred             cEEEeCceeEEEEEc-CCeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952          10 GEIRLNQQVESFKEN-PESVT-IS--T-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~-~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +++++++.++++..+ ++.+. |.  . ..|  ..+.|+.||+|+|.++.
T Consensus       152 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        152 VTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             cEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence            789999999998874 45442 33  2 234  24889999999999874

>KOG2404|consensus

Probab=81.37  E-value=1.9  Score=37.50  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=33.4

Q ss_pred             CcEEEeCceeEEEEEcCCeEE-EE--eCCC--cEEEcCEEEEcCCCCh
Q psy3952           9 GGEIRLNQQVESFKENPESVT-IS--TKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~-V~--t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      -++|..+++|++|.++.+++. |+  ...|  ..+.++.||+|+|.++
T Consensus       159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             HHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence            467889999999998887754 43  3333  4689999999999886

>TIGR03452 mycothione_red mycothione reductase

Probab=81.17  E-value=2.2  Score=38.89  Aligned_cols=40  Identities=13%  Similarity=0.151  Sum_probs=29.0

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++|++++.++.+..     +..+|++.+|.++++|+||+|+|...
T Consensus       104 ~~gv~~~~g~~~~~-----~~~~V~~~~g~~~~~d~lIiATGs~p  143 (452)
T TIGR03452       104 TPNIDVYDGHARFV-----GPRTLRTGDGEEITGDQIVIAAGSRP  143 (452)
T ss_pred             cCCeEEEEEEEEEe-----cCCEEEECCCcEEEeCEEEEEECCCC
Confidence            37899888775443     22456666665799999999999754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=80.76  E-value=3.7  Score=37.68  Aligned_cols=48  Identities=13%  Similarity=0.213  Sum_probs=36.5

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChH
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+++. ++++.++.|++++..++++.|+..  +|  .++.+|.||+|+|.-.+
T Consensus       224 ~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        224 RIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             HHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence            34566 999999999999877766665432  22  36999999999998654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=80.15  E-value=3.7  Score=37.70  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=31.5

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++++.+. +.-  .+...+.|.+.+|  .++.+|+||+|+|...
T Consensus       103 ~~~~gV~~~~g~-a~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p  148 (471)
T PRK06467        103 AKGRKVTVVNGL-GKF--TGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP  148 (471)
T ss_pred             HHhCCCEEEEEE-EEE--ccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence            456799998765 332  2445577877665  3699999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
3dme_A	369	Conserved exported protein; structural genomics, P	2e-68
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	4e-05
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	5e-04

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score =  214 bits (547), Expect = 2e-68
 Identities = 48/251 (19%), Positives = 77/251 (30%), Gaps = 50/251 (19%)

Query: 1   MGEEFCELGGEIRLNQQVESFKENPES---VTISTKQGDHLESSYALVCAGLQADEMALK 57
              +    G ++  +  + + +  PE    +     +   L     +  AGL A  +A +
Sbjct: 156 YQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARR 215

Query: 58  SGCSLE---PAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
                    P     +G Y  L  A +      IYPVP      LGVH T  + G    G
Sbjct: 216 IEGIPRDSIPPEYLCKGSYFTL--AGRAPFSRLIYPVPQH--AGLGVHLTLDLGGQAKFG 271

Query: 115 PNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK 174
           P+       E Y                                              ++
Sbjct: 272 PDTEW-IATEDYTLDPRRADVF---------------------------------YAAVR 297

Query: 175 QYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVF-----HSAGRTLHCRNAPSPAATSS 229
            Y   +  G +  G +G+R + +S   +   DF       H     ++     SP  T+S
Sbjct: 298 SYWPALPDGALAPGYTGIRPK-ISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTAS 356

Query: 230 LAIAKHILNEL 240
           LAIA+  L  L
Sbjct: 357 LAIAEETLARL 367

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 7   ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
            LG EI  +  V   + + E++ I T  GD + +++ +V +G+ +     + G  L  A 
Sbjct: 176 MLGAEIFEHTPVLHVERDGEALFIKTPSGD-VWANHVVVASGVWSGMFFKQLG--LNNAF 232

Query: 67  VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
           +P +GE L +      L +     +          +  PR  G + +G
Sbjct: 233 LPVKGECLSVWNDDIPLTK----TLYHD-----HCYIVPRKSGRLVVG 271

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 17/114 (14%)

Query: 7   ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
              G++  N +    +    +  +    G    ++  +  AG   D +A  +G      +
Sbjct: 166 RNQGQVLCNHEALEIRRVDGAWEVRCDAGS-YRAAVLVNAAGAWCDAIAGLAGVRPLG-L 223

Query: 67  VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFL-----GVHFTPRMDGSVWLGP 115
            P R    +  P            +   ++P L       +  P   G +   P
Sbjct: 224 QPKRRSAFIFAPPP---------GIDCHDWPMLVSLDESFYLKPD-AGMLLGSP 267

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 7   ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
             G ++  + +VE F  +P+SV I T  G    +   +V  G    ++  K    L+  +
Sbjct: 162 ARGAKVLTHTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWNSKLLSKLN--LDIPL 218

Query: 67  VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
            P+R         +        +P      P    +  P   G     
Sbjct: 219 QPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKL 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3dme_A	369	Conserved exported protein; structural genomics, P	99.96
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.94
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.92
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.92
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.92
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.91
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.91
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.9
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.9
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.9
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.89
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.89
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.89
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.89
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.88
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.88
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.87
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.86
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.85
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.88
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.58
3atr_A	453	Conserved archaeal protein; saturating double bond	98.28
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.16
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.15
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.08
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.05
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.05
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.03
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.03
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.98
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.97
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.84
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.82
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.74
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.73
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.72
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.71
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.71
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.7
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.66
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.5
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.48
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.39
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.39
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.38
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.32
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.31
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.3
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.27
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.27
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.26
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.14
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.13
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.05
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.05
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.95
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	96.95
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.94
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.93
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.93
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.92
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.91
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.88
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.85
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.85
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.85
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.81
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	96.79
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.77
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.75
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.75
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.72
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.7
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.69
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.63
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.62
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.62
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.6
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.6
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.59
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.57
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.54
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.52
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.5
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.5
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.48
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.46
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.46
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.43
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.43
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.42
4dna_A	463	Probable glutathione reductase; structural genomic	96.41
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.38
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.37
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.35
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.31
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.29
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.28
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.24
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.19
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.19
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.18
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.17
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.1
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.09
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.09
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.09
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.06
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.06
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	96.05
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.03
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.99
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	95.98
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.95
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	95.92
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.91
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.9
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.85
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.84
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.79
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.73
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.7
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.69
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.64
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.63
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.6
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.52
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.43
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.38
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.32
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.27
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.26
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.26
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.25
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.23
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.19
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.19
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.16
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.14
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.95
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.84
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.84
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.83
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.74
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.68
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.61
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.57
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	94.53
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.52
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	94.5
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.43
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.36
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.25
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.1
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.01
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	93.87
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.86
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.76
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.71
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.66
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	93.52
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	93.49
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.34
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.22
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	93.15
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.13
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.09
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	92.96
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.89
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	92.83
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	92.83
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.77
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	92.7
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.66
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.63
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	92.62
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	92.62
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	92.55
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	92.48
4fk1_A	304	Putative thioredoxin reductase; structural genomic	92.47
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.11
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	92.1
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.03
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.0
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	91.99
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.98
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	91.97
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.83
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	91.78
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	91.36
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	91.35
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	91.31
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	90.87
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	90.79
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	90.72
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.65
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	90.54
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	90.48
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	90.41
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	90.36
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	90.34
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	90.32
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	90.29
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	90.12
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	90.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.05
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	89.92
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	89.85
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	89.64
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	89.59
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	89.58
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	89.53
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	89.4
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	89.39
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	89.27
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	89.14
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	89.12
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	89.06
1ojt_A	482	Surface protein; redox-active center, glycolysis,	88.95
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	88.75
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	88.54
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	88.29
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	88.12
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	87.76
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	87.6
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.33
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	86.82
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	86.65
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	86.44
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	85.98
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	85.8
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	84.52
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	83.72
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	83.33
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	82.53
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	82.33
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	81.92
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	81.61
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	81.5
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	80.84
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	80.41

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.96  E-value=8.2e-28  Score=209.30  Aligned_cols=201  Identities=22%  Similarity=0.311  Sum_probs=157.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCC--cEEEcCEEEEcCCCChHHHHHHc-CCCC--CCceeeeeeEEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VTISTKQG--DHLESSYALVCAGLQADEMALKS-GCSL--EPAIVPFRGEYLL   75 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g--~~i~A~~VV~AaG~ws~~l~~~~-g~~~--~~~~~p~~g~~~~   75 (252)
                      .+.++++|++|+++++|++|+.++++ |.|.|.+|  .++.||.||+|+|+|+..|++++ |++.  ..++.|.||+++.
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~~~~  236 (369)
T 3dme_A          157 QGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFT  236 (369)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEEEEE
T ss_pred             HHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceEEEE
Confidence            56788999999999999999998765 88988877  47999999999999999999999 8631  2578999999999


Q ss_pred             eCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhh
Q psy3952          76 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRY  155 (252)
Q Consensus        76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (252)
                      ++.+  ...++.+|+.|...  ..++++.+..+|++++|++.+...   +++. ..+.                     +
T Consensus       237 ~~~~--~~~~~~~~~~p~~~--~~~~~~~~~~~g~~~iG~t~e~~~---~~~~-~~~~---------------------~  287 (369)
T 3dme_A          237 LAGR--APFSRLIYPVPQHA--GLGVHLTLDLGGQAKFGPDTEWIA---TEDY-TLDP---------------------R  287 (369)
T ss_dssp             CSSS--CSCSSEEEECTTCS--SCCCCEEECTTSCEEECCCCEEES---SCCC-CCCG---------------------G
T ss_pred             ECCC--CccCceeecCCCCC--CceEEEeCccCCcEEECCCccccc---cccc-ccCH---------------------H
Confidence            8763  34556677777542  346778888899999999876421   1111 1111                     2


Q ss_pred             hhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEE-Ee----cCCeEEEeccCCccccchH
Q psy3952         156 GSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVF-HS----AGRTLHCRNAPSPAATSSL  230 (252)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i-~~----~~~~~~~~G~~~~G~t~a~  230 (252)
                      .++.         +++.+.+++|.|+..++.+.|+|+||++.++ +.|+.+|+| ++    .+|+|+++|++++|+|+||
T Consensus       288 ~~~~---------l~~~~~~~~P~l~~~~v~~~w~G~Rp~~~~~-~~~d~~p~i~g~~~~~~~~l~~~~G~~~~G~t~ap  357 (369)
T 3dme_A          288 RADV---------FYAAVRSYWPALPDGALAPGYTGIRPKISGP-HEPAADFAIAGPASHGVAGLVNLYGIESPGLTASL  357 (369)
T ss_dssp             GGGG---------HHHHHHTTCTTCCTTCCEEEEEEEEEESSCT-TSCCCCCEEECHHHHCCTTEEEEECCCTTHHHHHH
T ss_pred             HHHH---------HHHHHHHHCCCCChhhceecceeccccccCC-CCCcCCeEEecccccCCCCEEEEeCCCCchHhccH
Confidence            3333         3488999999999999999999999986322 245567777 44    4799999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy3952         231 AIAKHILNELR  241 (252)
Q Consensus       231 ~~g~~va~~i~  241 (252)
                      ++|+.++++|.
T Consensus       358 ~~a~~~a~~i~  368 (369)
T 3dme_A          358 AIAEETLARLA  368 (369)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999985

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.94  E-value=3.5e-26  Score=200.14  Aligned_cols=195  Identities=12%  Similarity=0.105  Sum_probs=145.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      |++.|+++|++|+++++|++|+.++++|.|+|++| ++.||+||+|+|+|+..|++++|+. .+++.|.+|+++.++.+.
T Consensus       160 l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~-~~~~~p~rg~~~~~~~~~  237 (381)
T 3nyc_A          160 YLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR-PLGLQPKRRSAFIFAPPP  237 (381)
T ss_dssp             HHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC-CCCCEEEEEEEEEECCCT
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC-CCceeeeEEEEEEECCCc
Confidence            35678899999999999999999888899999999 9999999999999999999999873 368999999999887532


Q ss_pred             cccccc-eeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952          81 QHLVRG-NIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  159 (252)
Q Consensus        81 ~~~~~~-~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
                      ...... ..+...     ..++|++|.. |++++|++.+......+...   +.                     ..++.
T Consensus       238 ~~~~~~~p~~~~~-----~~~~y~~p~~-g~~~ig~~~~~~~~~~~~~~---~~---------------------~~~~~  287 (381)
T 3nyc_A          238 GIDCHDWPMLVSL-----DESFYLKPDA-GMLLGSPANADPVEAHDVQP---EQ---------------------LDIAT  287 (381)
T ss_dssp             TCCCTTCCEEEET-----TSSCEEEEET-TEEEEECCCCEECCSSCCCC---CH---------------------HHHHH
T ss_pred             CCCcCccceEEeC-----CCCEEEEeCC-CcEEEeCCcCCCCCcccCCC---Ch---------------------HHHHH
Confidence            111111 011111     2357888876 89999987653211111000   00                     12222


Q ss_pred             HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHHHH
Q psy3952         160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAKHI  236 (252)
Q Consensus       160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~~v  236 (252)
                      +         ++.+.+ +|.+...++.+.|+|+||++  ||+.|    +|+..   +|+|+++|++|+|+++||++|+.+
T Consensus       288 ~---------~~~~~~-~~~l~~~~~~~~w~G~r~~t--~D~~p----~ig~~~~~~~l~~a~G~~g~G~~~ap~~g~~l  351 (381)
T 3nyc_A          288 G---------MYLIEE-ATTLTIRRPEHTWAGLRSFV--ADGDL----VAGYAANAEGFFWVAAQGGYGIQTSAAMGEAS  351 (381)
T ss_dssp             H---------HHHHHH-HBSCCCCCCSEEEEEEEEEC--TTSCC----EEEECTTSTTEEEEECCTTCTTTTHHHHHHHH
T ss_pred             H---------HHHHHh-cCCCcccceeeeeEEccccC--CCCCc----eecCCCCCCCeEEEEcCCChhHhhCHHHHHHH
Confidence            2         345544 58888888999999999986  88765    58774   699999999999999999999999


Q ss_pred             HHHHHhh
Q psy3952         237 LNELRRE  243 (252)
Q Consensus       237 a~~i~~~  243 (252)
                      |++|.++
T Consensus       352 a~~i~g~  358 (381)
T 3nyc_A          352 AALIRHQ  358 (381)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhCC
Confidence            9999754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.92  E-value=1.8e-24  Score=189.76  Aligned_cols=194  Identities=11%  Similarity=0.120  Sum_probs=147.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      .+.++++|++++++++|++++.++++|. |+|.+| ++.||.||+|+|.|+..|.+++|....+|+.|.+|+++.+++..
T Consensus       156 ~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~  234 (382)
T 1y56_B          156 AVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIK  234 (382)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCSCCCCEEEEEEEEEECCCS
T ss_pred             HHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCcCcCCCeeEeEEEEEccCC
Confidence            4677889999999999999999888887 999999 99999999999999999999888621178999999998886531


Q ss_pred             ccccc-ceeecCCCCCCCCceeEEEEecCCcEEEcc-cceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhH
Q psy3952          81 QHLVR-GNIYPVPDPNFPFLGVHFTPRMDGSVWLGP-NAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK  158 (252)
Q Consensus        81 ~~~~~-~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (252)
                       .... ..++.. .    ..++|++|..+| +++|. +....   .+++. ..+.                     +.++
T Consensus       235 -~~~~~~~~~~~-~----~~~~y~~p~~~g-~~iG~~~~~~~---~~~~~-~~~~---------------------~~~~  282 (382)
T 1y56_B          235 -RGTINPMVISF-K----YGHAYLTQTFHG-GIIGGIGYEIG---PTYDL-TPTY---------------------EFLR  282 (382)
T ss_dssp             -TTSSCSEEEES-T----TTTEEEECCSSS-CCEEECSCCBS---SCCCC-CCCH---------------------HHHH
T ss_pred             -cccCCCeEEec-C----CCeEEEEEeCCe-EEEecCCCCCC---CCCCC-CCCH---------------------HHHH
Confidence             1122 223221 1    135788998888 88984 32211   12211 1011                     2233


Q ss_pred             HHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHHH
Q psy3952         159 EMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAKH  235 (252)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~~  235 (252)
                               .+++.+.+++|.|...++.+.|+|+||.+  +|+.|    +++..   +|+|+++|++|+|+++||++|+.
T Consensus       283 ---------~l~~~~~~~~p~l~~~~~~~~~~g~r~~t--~d~~p----~ig~~~~~~~~~~~~G~~g~G~~~a~~~g~~  347 (382)
T 1y56_B          283 ---------EVSYYFTKIIPALKNLLILRTWAGYYAKT--PDSNP----AIGRIEELNDYYIAAGFSGHGFMMAPAVGEM  347 (382)
T ss_dssp             ---------HHHHHHHHHCGGGGGSEEEEEEEEEEEEC--TTSCC----EEEEESSSBTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHhCCCcCCCCceEEEEeccccC--CCCCc----EeccCCCCCCEEEEEecCcchHhhhHHHHHH
Confidence                     33478899999999889999999999987  78755    57764   59999999999999999999999


Q ss_pred             HHHHHHhh
Q psy3952         236 ILNELRRE  243 (252)
Q Consensus       236 va~~i~~~  243 (252)
                      ++++|.+.
T Consensus       348 la~~i~~~  355 (382)
T 1y56_B          348 VAELITKG  355 (382)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhCC
Confidence            99999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.92  E-value=3.1e-24  Score=188.45  Aligned_cols=200  Identities=14%  Similarity=0.139  Sum_probs=145.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.++++|++++++++|++++.++++|.|+|++| ++.||.||+|+|.|+..+...+|.  .+|+.|.+|+++.+++...
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g~--~~pl~~~rg~~~~~~~~~~  233 (389)
T 2gf3_A          157 RELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNL--DIPLQPYRQVVGFFESDES  233 (389)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTE--ECCCEEEEEEEEEECCCHH
T ss_pred             HHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhcc--CCceEEEEEEEEEEecCcc
Confidence            4678889999999999999999888898999888 899999999999999999888875  4779999999999875421


Q ss_pred             ccc---cceeecCCCCCCCCceeEEEEecCC-cEEEcccceec-ccccCccccccchhHHhhhhcCCCccccchhhhhhh
Q psy3952          82 HLV---RGNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  156 (252)
Q Consensus        82 ~~~---~~~i~~~~~~~~~~~~~~~~~~~~g-~~~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (252)
                      ...   ...++.....   ...+|+.|..+| ++++|.+.... ..+++.+. ..              +     ...+.
T Consensus       234 ~~~~~~~~p~~~~~~~---~~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~-~~--------------~-----~~~~~  290 (389)
T 2gf3_A          234 KYSNDIDFPGFMVEVP---NGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINR-EF--------------G-----VYPED  290 (389)
T ss_dssp             HHBGGGTCCEEEEEET---TEEEEEECBSTTCCEEEEESSCCEECCTTTCCC-CT--------------T-----SSHHH
T ss_pred             cccccccCCEEEEeCC---CCcEEEcCCCCCCcEEEEEcCCCCccCcccccC-cc--------------C-----CCHHH
Confidence            100   0011100000   125678888887 99998653211 01111110 00              0     00022


Q ss_pred             hHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHH
Q psy3952         157 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIA  233 (252)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g  233 (252)
                      ++         .+.+.+.++||.+.. ++.+.|+|+||.+  ||+.|    +|+..   +|+|+++|++|+|+++||++|
T Consensus       291 ~~---------~l~~~~~~~~P~l~~-~~~~~w~g~r~~t--~D~~p----~ig~~~~~~~l~~a~G~~g~G~~~ap~~g  354 (389)
T 2gf3_A          291 ES---------NLRAFLEEYMPGANG-ELKRGAVCMYTKT--LDEHF----IIDLHPEHSNVVIAAGFSGHGFKFSSGVG  354 (389)
T ss_dssp             HH---------HHHHHHHHHCGGGCS-CEEEEEEEEEEEC--TTSCC----EEEEETTEEEEEEEECCTTCCGGGHHHHH
T ss_pred             HH---------HHHHHHHHhCCCCCC-CceEEEEEEeccC--CCCCe----EEccCCCCCCEEEEECCccccccccHHHH
Confidence            33         344889999999987 7888999999986  88755    57764   699999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy3952         234 KHILNELRRE  243 (252)
Q Consensus       234 ~~va~~i~~~  243 (252)
                      +.++++|.+.
T Consensus       355 ~~la~~i~~~  364 (389)
T 2gf3_A          355 EVLSQLALTG  364 (389)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHcCC
Confidence            9999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.92  E-value=5.2e-24  Score=191.00  Aligned_cols=200  Identities=13%  Similarity=0.063  Sum_probs=148.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEE---------------cCCe-EEEEeCCCcEE--EcCEEEEcCCCChHHHHHHcCCCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKE---------------NPES-VTISTKQGDHL--ESSYALVCAGLQADEMALKSGCSLE   63 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~---------------~~~~-~~V~t~~g~~i--~A~~VV~AaG~ws~~l~~~~g~~~~   63 (252)
                      .+.++++|++|+++++|++|+.               ++++ +.|.|.+| ++  .||.||+|+|+|+..|++++|.  .
T Consensus       188 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~~l~~~~g~--~  264 (448)
T 3axb_A          188 YRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSNRLLNPLGI--D  264 (448)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHHHHHGGGTC--C
T ss_pred             HHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHHHHHHHcCC--C
Confidence            5678889999999999999998               5666 46889999 89  9999999999999999999986  5


Q ss_pred             CceeeeeeEEEEeCCCccccccceeec--------CCCCCCCCceeEEEEecC-CcEEEcccceecccccCcccc-ccch
Q psy3952          64 PAIVPFRGEYLLLNPAKQHLVRGNIYP--------VPDPNFPFLGVHFTPRMD-GSVWLGPNAVLAFKKEGYRWR-DFSV  133 (252)
Q Consensus        64 ~~~~p~~g~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~-g~~~iG~~~~~~~~~~~~~~~-~~~~  133 (252)
                      +++.|.+|+++.+++... .+...++.        .|... ...++|++|..+ |++++|++.+.. .+++++.. ..+.
T Consensus       265 ~~~~p~rg~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~-~~~~~y~~p~~~~g~~~iG~~~~~~-~~~~~~~~~~~~~  341 (448)
T 3axb_A          265 TFSRPKKRMVFRVSASTE-GLRRIMREGDLAGAGAPPLII-LPKRVLVRPAPREGSFWVQLSDNLG-RPFALEEDPQPEE  341 (448)
T ss_dssp             CSEEEEEEEEEEEECCSH-HHHHHHHHCCTTSSSSCCEEE-ETTTEEEEEETTTTEEEEEECCCTT-SCBCCCSSCCCCH
T ss_pred             CcccccceEEEEeCCccc-ccccccccccccccCCCceEE-cCCceEEeecCCCCeEEEecCCccc-CCcccccccCCCh
Confidence            889999999999875321 01110000        00000 013578899888 899999876421 11111110 0000


Q ss_pred             hHHhhhhcCCCccccchhhhhhh-hHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeE-eecCCCCcccceEEEe
Q psy3952         134 RELFSTLRYPGFWRLGLKYTRYG-SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ-ALSSSGDLVDDFVFHS  211 (252)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~-~~~~d~~p~~~~~i~~  211 (252)
                                           +. ++         .+++.+.++||.|+..++.+.|+|+||+ +  +|+.|    +|+.
T Consensus       342 ---------------------~~~~~---------~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t--~d~~p----~ig~  385 (448)
T 3axb_A          342 ---------------------HYYSL---------AILPILSLYLPQFQDAYPSGGWAGHYDISF--DANPV----VFEP  385 (448)
T ss_dssp             ---------------------HHHHH---------HTHHHHHHHCGGGTTCCCSEEEEEEEEEET--TSSCE----EECG
T ss_pred             ---------------------HHHHH---------HHHHHHHHhCcCcccCCcccceEEEecccc--CCCCc----Eeee
Confidence                                 22 23         3347899999999988999999999998 6  78754    5776


Q ss_pred             c-CCeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         212 A-GRTLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       212 ~-~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      . +|+|+++|++|+|+++||++|+.++++|.+.
T Consensus       386 ~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~  418 (448)
T 3axb_A          386 WESGIVVAAGTSGSGIMKSDSIGRVAAAVALGM  418 (448)
T ss_dssp             GGCSEEEEECCTTCCGGGHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEECCCchhHhHhHHHHHHHHHHHcCC
Confidence            5 7999999999999999999999999999865

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.91  E-value=2e-23  Score=192.43  Aligned_cols=206  Identities=14%  Similarity=0.162  Sum_probs=149.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCC---C--cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV-TISTKQ---G--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL   75 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~---g--~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~   75 (252)
                      ++.|+++|++|+++++|++|.++++++ .|++.+   |  .++.|+.||||+|+|++.|.+++|.....++.|.||++++
T Consensus       177 ~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~~~~~v~p~kG~~lv  256 (561)
T 3da1_A          177 MKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLV  256 (561)
T ss_dssp             HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCCCSSEEEEEEEEEEE
T ss_pred             HHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCCCCceEEeccEEEEE
Confidence            567889999999999999999988774 465432   2  3799999999999999999999987545789999999999


Q ss_pred             eCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          76 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      ++....+.....+++.+..   ...+++.|. +|++++|++.+... +..+.   ..+                     .
T Consensus       257 l~~~~~~~~~~~~~~~~~d---gr~v~~iP~-~g~~~iGtT~~~~~~~~~~~---~~t---------------------~  308 (561)
T 3da1_A          257 VDQSRFPLRQAVYFDTESD---GRMIFAIPR-EGKTYIGTTDTFYDKDIASP---RMT---------------------V  308 (561)
T ss_dssp             EEGGGSCCSSEEEECCSSS---CCCEEEEEE-TTEEEECCCCEEECSCTTCC---CCC---------------------H
T ss_pred             ECCccCCCceEEEeccCCC---CcEEEEEec-CCCEEEcCCCCccCCCcCCC---CCC---------------------H
Confidence            9753222222233443111   335778887 78999999876431 11111   111                     1


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhccCCC--CCCceecCCcceeEeecCCCCc---c-cceEEEecCCeEEEeccCCccccc
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIEEIE--AGDIQRGPSGVRAQALSSSGDL---V-DDFVFHSAGRTLHCRNAPSPAATS  228 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~--~~~i~~~w~G~rp~~~~~d~~p---~-~~~~i~~~~~~~~~~G~~~~G~t~  228 (252)
                      ++++.+         ++.++++||.+.  ..++...|+|+||.+.++.+.+   . .++++...+|++.++|..   +|+
T Consensus       309 ~~i~~l---------l~~~~~~~P~l~~~~~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~~~~gli~i~Ggk---~Tt  376 (561)
T 3da1_A          309 EDRDYI---------LAAANYMFPSLRLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFFSDSGLISIAGGK---LTG  376 (561)
T ss_dssp             HHHHHH---------HHHHHHHCTTCCCCTTTEEEEEEEEEEEEEC-----------CCEEECSSCCEEECCCC---STT
T ss_pred             HHHHHH---------HHHHHHhCCCCCCChhhEEEEeEEeccccCCCCCCccccccceEEEecCCCeEEEeCCh---hhh
Confidence            345544         488999999976  7899999999999985432221   2 355565568999999876   999


Q ss_pred             hHHHHHHHHHHHHhhcccc
Q psy3952         229 SLAIAKHILNELRREFKLD  247 (252)
Q Consensus       229 a~~~g~~va~~i~~~~~~~  247 (252)
                      ++.+|+.+++++.+.+++.
T Consensus       377 ~r~mAe~~~d~~~~~~~~~  395 (561)
T 3da1_A          377 YRKMAERTVDAVAQGLNVN  395 (561)
T ss_dssp             HHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            9999999999999988764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.91  E-value=3.2e-23  Score=181.09  Aligned_cols=195  Identities=14%  Similarity=0.133  Sum_probs=138.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.++++|++++++++|++|+.++++|.|+|++| ++.||.||+|+|+|+..++.      .+|+.|.+|+++.+..+..
T Consensus       156 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~------~l~~~p~rg~~~~~~~~~~  228 (372)
T 2uzz_A          156 IQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLP------ELPVQPVRKVFAWYQADGR  228 (372)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTST------TCCCEEEECCEEEECCCGG
T ss_pred             HHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhcc------ccCceEEEEEEEEEEeccc
Confidence            4667889999999999999999888899999999 89999999999999987753      3678999999888764311


Q ss_pred             ccc--cceeecCCCCCCCCceeEEEEecCCcEEEcccce--ecccccCccccccchhHHhhhhcCCCccccchhhhhhhh
Q psy3952          82 HLV--RGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAV--LAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGS  157 (252)
Q Consensus        82 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (252)
                      ...  ...++.....  .....|+.|..+|++++|.+..  ......+.  .....                   +.+..
T Consensus       229 ~~~~~~~p~~~~~~~--~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~~~--~~~~~-------------------~~~~~  285 (372)
T 2uzz_A          229 YSVKNKFPAFTGELP--NGDQYYGFPAENDALKIGKHNGGQVIHSADER--VPFAE-------------------VVSDG  285 (372)
T ss_dssp             GSTTTTCCEEEEECT--TCCEEEEECCSSSCEEEEESSCCEECCSGGGC--CCTTT-------------------STTGG
T ss_pred             cCccccCCEEEEecC--CCCeEEecCCCCCeEEEEecCCCCccCChhhc--cCCCC-------------------CHHHH
Confidence            000  0011100000  0134677787788999997542  11000000  00000                   00122


Q ss_pred             HHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHH
Q psy3952         158 KEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAK  234 (252)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~  234 (252)
                      +         .+.+.+.++||.+.  ++...|+|+||.+  ||+.|+    |+..   +|+|+++|++|+|+++||++|+
T Consensus       286 ~---------~l~~~~~~~~P~l~--~~~~~~~g~r~~t--~d~~p~----ig~~~~~~~l~~~~G~~g~G~~~ap~~g~  348 (372)
T 2uzz_A          286 S---------EAFPFLRNVLPGIG--CCLYGAACTYDNS--PDEDFI----IDTLPGHDNTLLITGLSGHGFKFASVLGE  348 (372)
T ss_dssp             G---------SSHHHHHHHSCSCC--CEEEECCCEEEEC--TTSCCC----EEEETTEEEEEEECCCCSCCGGGHHHHHH
T ss_pred             H---------HHHHHHHHHCCCCC--ccceeeEEeeccC--CCCCeE----EecCCCCCCEEEEeCCCccchhccHHHHH
Confidence            2         23478899999997  6788999999986  888664    7664   5999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy3952         235 HILNELRRE  243 (252)
Q Consensus       235 ~va~~i~~~  243 (252)
                      .++++|.+.
T Consensus       349 ~la~~i~~~  357 (372)
T 2uzz_A          349 IAADFAQDK  357 (372)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhCC
Confidence            999999865

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.90  E-value=5.2e-23  Score=180.37  Aligned_cols=189  Identities=17%  Similarity=0.188  Sum_probs=147.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.+++.|++++++++|++|+.++++|.|.|.+| ++.||.||+|+|.|+..+++.+|.  .+++.|.+|+++.+++.. 
T Consensus       171 ~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~--~~~~~~~~g~~~~~~~~~-  246 (382)
T 1ryi_A          171 VKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGL--NNAFLPVKGECLSVWNDD-  246 (382)
T ss_dssp             HHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTC--CCCCEEEEEEEEEEECCS-
T ss_pred             HHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCC--CCceeccceEEEEECCCC-
Confidence            4667889999999999999998888888999888 999999999999999999998886  578899999998886532 


Q ss_pred             ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHHH
Q psy3952          82 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMI  161 (252)
Q Consensus        82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (252)
                      ...+..++.        .+.+++|..+|++++|.+.+..    ++.. ..+.                     +..+   
T Consensus       247 ~~~~~~~~~--------~~~~~~p~~~g~~~vG~~~~~~----~~~~-~~~~---------------------~~~~---  289 (382)
T 1ryi_A          247 IPLTKTLYH--------DHCYIVPRKSGRLVVGATMKPG----DWSE-TPDL---------------------GGLE---  289 (382)
T ss_dssp             SCCCSEEEE--------TTEEEEECTTSEEEEECCCEET----CCCC-SCCH---------------------HHHH---
T ss_pred             CCccceEEc--------CCEEEEEcCCCeEEEeeccccc----CCCC-CCCH---------------------HHHH---
Confidence            122222221        2467888888899999875432    1111 1000                     2233   


Q ss_pred             hhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHHHHHH
Q psy3952         162 MSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAKHILN  238 (252)
Q Consensus       162 ~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~~va~  238 (252)
                            .+++.+.+++|.++..++.+.|+|+||.+  +|+.|    +++..   +|+|+++|++|+|+++||.+|+.+++
T Consensus       290 ------~l~~~~~~~~p~l~~~~~~~~w~g~~~~t--~d~~p----~ig~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~  357 (382)
T 1ryi_A          290 ------SVMKKAKTMLPAIQNMKVDRFWAGLRPGT--KDGKP----YIGRHPEDSRILFAAGHFRNGILLAPATGALISD  357 (382)
T ss_dssp             ------HHHHHHHHHCGGGGGSEEEEEEEEEEEEC--SSSCC----EEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHH
T ss_pred             ------HHHHHHHHhCCCcCCCceeeEEEEecccC--CCCCc----EeccCCCcCCEEEEEcCCcchHHHhHHHHHHHHH
Confidence                  34478999999998888899999999986  77755    57764   59999999999999999999999999


Q ss_pred             HHHhh
Q psy3952         239 ELRRE  243 (252)
Q Consensus       239 ~i~~~  243 (252)
                      +|.+.
T Consensus       358 ~i~~~  362 (382)
T 1ryi_A          358 LIMNK  362 (382)
T ss_dssp             HHTTC
T ss_pred             HHhCC
Confidence            99765

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.90  E-value=3.4e-22  Score=176.37  Aligned_cols=201  Identities=9%  Similarity=-0.015  Sum_probs=141.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.|+++|++|+++++|++|+.++++|+|.|++| +++|+.||+|+|+|+..+.+++|.  .+|+.|.+++++.+++...
T Consensus       160 ~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~--~~p~~~~~~~~~~~~~~~~  236 (397)
T 2oln_A          160 FTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGA--RLAYSVYEMAIAAYRQATP  236 (397)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTC--CCCEEEEEEEEEEEEBCSC
T ss_pred             HHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCC--CCCeeEEEEEEEEEeecCc
Confidence            4567889999999999999998888899999888 899999999999999999998886  5889999999988864311


Q ss_pred             c-cccceeecCCCCCCCCceeEEEEecCC----cEEEccccee--cccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952          82 H-LVRGNIYPVPDPNFPFLGVHFTPRMDG----SVWLGPNAVL--AFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  154 (252)
Q Consensus        82 ~-~~~~~i~~~~~~~~~~~~~~~~~~~~g----~~~iG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (252)
                      . .....+.............|++|..+|    ++++|.+...  ...+++.+. ..+                     .
T Consensus       237 ~~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~---------------------~  294 (397)
T 2oln_A          237 VTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATG-VAD---------------------R  294 (397)
T ss_dssp             CSCCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCS-SCC---------------------H
T ss_pred             ccCCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccC-CCC---------------------H
Confidence            0 011111111100000015677886665    7999965421  001111100 000                     0


Q ss_pred             hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec-------CCeEEEeccCCcccc
Q psy3952         155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-------GRTLHCRNAPSPAAT  227 (252)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~-------~~~~~~~G~~~~G~t  227 (252)
                      +.++         .+.+.+.++||.+.. .+.+.|+|+++.+.+||+.|    +|++.       +|+|+++|  |+|++
T Consensus       295 ~~~~---------~l~~~~~~~~p~l~~-~~~~~~~g~~~~p~t~D~~p----~ig~~~~~~~~~~~l~~a~G--g~G~~  358 (397)
T 2oln_A          295 RQMD---------RLSGWLRDHLPTVDP-DPVRTSTCLAVLPTDPERQF----FLGTARDLMTHGEKLVVYGA--GWAFK  358 (397)
T ss_dssp             HHHH---------HHHHHHHHHCTTBCS-SCSEEEEEEEEEESSTTCCC----EEEESTTTSTTGGGEEEEEE--SSCGG
T ss_pred             HHHH---------HHHHHHHHhCCCCCC-CceeEEEEEecCCcCCCCCe----EeecCCccccCCCCEEEEeC--cchhh
Confidence            2232         344788999999987 77789999987334588755    57763       68999999  79999


Q ss_pred             chHHHHHHHHHHHHhh
Q psy3952         228 SSLAIAKHILNELRRE  243 (252)
Q Consensus       228 ~a~~~g~~va~~i~~~  243 (252)
                      +||.+|+.++++|.+.
T Consensus       359 ~ap~~g~~la~~i~~~  374 (397)
T 2oln_A          359 FVPLFGRICADLAVED  374 (397)
T ss_dssp             GHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHhCC
Confidence            9999999999999865

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.90  E-value=2.1e-22  Score=177.66  Aligned_cols=192  Identities=11%  Similarity=0.102  Sum_probs=146.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      .+.+++.|++++++++|++++.++++ +.|+|.+| ++.||.||+|+|.|+..+.+++|+  .+|+.|.+++++++++. 
T Consensus       181 ~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~--~~~~~~~~~~~~~~~~~-  256 (405)
T 2gag_B          181 ARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGF--ELPIQSHPLQALVSELF-  256 (405)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTC--CCCEEEEEEEEEEEEEB-
T ss_pred             HHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCC--CCCccccceeEEEecCC-
Confidence            45678899999999999999988766 66899888 899999999999999999999987  57899999998877532 


Q ss_pred             cccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          81 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                      .......++. +     ...+|++|..+|++++|.+.+..   .++.. ..+.                     +.++  
T Consensus       257 ~~~~~~~~~~-~-----~~~~y~~p~~~g~~~ig~~~~~~---~~~~~-~~~~---------------------~~~~--  303 (405)
T 2gag_B          257 EPVHPTVVMS-N-----HIHVYVSQAHKGELVMGAGIDSY---NGYGQ-RGAF---------------------HVIQ--  303 (405)
T ss_dssp             CSCCCSEEEE-T-----TTTEEEEECTTSEEEEEEEECSS---CCCSS-CCCT---------------------HHHH--
T ss_pred             ccccCceEEe-C-----CCcEEEEEcCCCcEEEEeccCCC---Ccccc-CCCH---------------------HHHH--
Confidence            1111222211 1     23577888888999999765421   11111 0000                     2233  


Q ss_pred             HhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec--CCeEEEeccCCccccchHHHHHHHHH
Q psy3952         161 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA--GRTLHCRNAPSPAATSSLAIAKHILN  238 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~--~~~~~~~G~~~~G~t~a~~~g~~va~  238 (252)
                             .+.+.+.+++|.++..++.+.|+|+||++  +|+.|    +++..  +|+|+++|++|+|+++|+.+|+.+++
T Consensus       304 -------~l~~~~~~~~p~l~~~~~~~~w~g~~~~t--~d~~p----~ig~~~~~~l~~~~G~~g~G~~~a~~~g~~la~  370 (405)
T 2gag_B          304 -------EQMAAAVELFPIFARAHVLRTWGGIVDTT--MDASP----IISKTPIQNLYVNCGWGTGGFKGTPGAGFTLAH  370 (405)
T ss_dssp             -------HHHHHHHHHCGGGGGCEECEEEEEEEEEE--TTSCC----EEEECSSBTEEEEECCGGGCSTTHHHHHHHHHH
T ss_pred             -------HHHHHHHHhCCccccCCcceEEeeccccC--CCCCC----EecccCCCCEEEEecCCCchhhHHHHHHHHHHH
Confidence                   33478899999998888899999999987  78755    57775  59999999999999999999999999


Q ss_pred             HHHhh
Q psy3952         239 ELRRE  243 (252)
Q Consensus       239 ~i~~~  243 (252)
                      +|.+.
T Consensus       371 ~i~g~  375 (405)
T 2gag_B          371 TIAND  375 (405)
T ss_dssp             HHHHT
T ss_pred             HHhCC
Confidence            99865

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.89  E-value=6.3e-23  Score=193.44  Aligned_cols=192  Identities=11%  Similarity=0.062  Sum_probs=142.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc-EEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~-~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      .+.+++.|++|+++++|++|+.++++|.|.|.+|. ++.|+.||+|+|+|+..+...++    +|+.|++|+++.++...
T Consensus       419 ~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~----lpl~p~rGq~~~~~~~~  494 (689)
T 3pvc_A          419 MMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHH----LPLSAVRGQVSHIPTTP  494 (689)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTTT----SCCEEEEEEEEEEECCT
T ss_pred             HHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhccccccC----CccccccCcEEEECCCC
Confidence            46678899999999999999999888999998886 79999999999999988876654    57899999999986532


Q ss_pred             c-ccccceeecCCCCCCCCceeEEEEec--CCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhh
Q psy3952          81 Q-HLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGS  157 (252)
Q Consensus        81 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~--~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (252)
                      . ..+...+         ..+.|++|..  +|++++|.+.+..    +.+. .++.                     +..
T Consensus       495 ~~~~l~~v~---------~~~~Yl~P~~~~~g~~~iGat~~~~----~~d~-~~~~---------------------~~~  539 (689)
T 3pvc_A          495 VLSQLQQVL---------CYDGYLTPVNPANQHHCIGASYQRG----DIAT-DFRL---------------------TEQ  539 (689)
T ss_dssp             TGGGCCSEE---------ESSSEECCCBTTTTEEEEECCCEET----BCCC-CCCH---------------------HHH
T ss_pred             ccccCCeeE---------eCCceEccccCCCCeEEEEEeccCC----CCCC-CCCH---------------------HHH
Confidence            1 0111111         1125788887  7899999876532    1111 1111                     122


Q ss_pred             HHHHhhhChhHHHHHHHHhccCCC-----CCCceecCCcceeEeecCCCCcccceEEE----------------------
Q psy3952         158 KEMIMSWFPSMRVNELKQYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVDDFVFH----------------------  210 (252)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~w~G~rp~~~~~d~~p~~~~~i~----------------------  210 (252)
                      .         .+++.+.+++|.+.     +..+.+.|+|+||.+  ||+.|+.+.+-+                      
T Consensus       540 ~---------~ll~~l~~~~P~l~~~~~~~~~~~~~w~G~R~~t--~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~  608 (689)
T 3pvc_A          540 Q---------ENRERLLRCLPQVSWPQQVDVSDNQARCGVRCAI--RDHLPMVGAVPDYAATLAQYQDLSRRIQHGGESE  608 (689)
T ss_dssp             H---------HHHHHHHHHCTTCSGGGGCCCTTCCEEEEEEEEC--TTSCCEEEEEECHHHHHHHSTTHHHHC-------
T ss_pred             H---------HHHHHHHHhCCCccccccccccccceeEEEeeec--CCCCcccCcCCCHHHHHHHHHhhhcccccccccc
Confidence            2         23478899999986     345678999999986  898876443322                      


Q ss_pred             --------ecCCeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         211 --------SAGRTLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       211 --------~~~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                              ..+|+|+++|++|+|+++||.+|+.+|++|.+.
T Consensus       609 ~~~~~~~~~~~~l~~a~G~g~~Gl~~ap~~ae~lA~~i~g~  649 (689)
T 3pvc_A          609 VNDIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAAQMFGE  649 (689)
T ss_dssp             -CCCCCCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCCCCChHHhhcccccHHHHHHHHHHHHHHHHcCC
Confidence                    036999999999999999999999999999754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.89  E-value=8.1e-23  Score=192.33  Aligned_cols=192  Identities=12%  Similarity=0.076  Sum_probs=142.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ   81 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~   81 (252)
                      .+.++++|++|+++++|++|+.++++|.|+|.+|.++.|+.||+|+|.|+..+.+..+    +|+.|++|+++.++....
T Consensus       424 ~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~----lpl~p~rGq~~~~~~~~~  499 (676)
T 3ps9_A          424 LELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTST----LPVYSVAGQVSHIPTTPE  499 (676)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGCSTTTTT----CSCEEEEEEEEEEECCTT
T ss_pred             HHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhccccccC----CcceeecCEEEEECCCcc
Confidence            4667889999999999999999999999999876589999999999999988876554    678999999998864311


Q ss_pred             -ccccceeecCCCCCCCCceeEEEEec--CCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhH
Q psy3952          82 -HLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK  158 (252)
Q Consensus        82 -~~~~~~i~~~~~~~~~~~~~~~~~~~--~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (252)
                       ..+...+         ..+.|++|..  +|++++|.+.+..    +.+. .++.                     +...
T Consensus       500 ~~~l~~~l---------~~~~Yl~P~~~~~g~~~iG~t~~~~----~~d~-~~~~---------------------~~~~  544 (676)
T 3ps9_A          500 LAELKQVL---------CYDGYLTPQNPANQHHCIGASYHRG----SEDT-AYSE---------------------DDQQ  544 (676)
T ss_dssp             GGGCCSEE---------ESSSEECCCBTTTTEEEEECCCEET----CCCC-CCCH---------------------HHHH
T ss_pred             cccCCcee---------ECCeeeccccCCCCeEEEeeccCCC----CCCC-CCCH---------------------HHHH
Confidence             0111111         1125788877  7899999876542    1111 1111                     2222


Q ss_pred             HHHhhhChhHHHHHHHHhccCCC-----CCCceecCCcceeEeecCCCCcccceEEE----------------------e
Q psy3952         159 EMIMSWFPSMRVNELKQYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVDDFVFH----------------------S  211 (252)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~w~G~rp~~~~~d~~p~~~~~i~----------------------~  211 (252)
                               .+++.+.+++|.+.     +..+.+.|+|+||.+  ||+.|+.+.+-+                      .
T Consensus       545 ---------~~l~~l~~~~P~l~~~~~~d~~~~~~~~G~R~~t--~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~  613 (676)
T 3ps9_A          545 ---------QNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCAT--RDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPV  613 (676)
T ss_dssp             ---------HHHHHHHHHSTTCHHHHTCCCTTCCEEEEEEEEC--TTCCCEEEEEECHHHHHHHTTTTTSCCTTCCSCCE
T ss_pred             ---------HHHHHHHHhCCCccccccCcccccceEEEEeCcc--CCcCCccCcCCChHHHHHHHHhhhccccccccCCC
Confidence                     23477899999986     345678999999986  898775333221                      0


Q ss_pred             cCCeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         212 AGRTLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       212 ~~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      .+|+|+++|++|+|+++||.+|+.+|++|.+.
T Consensus       614 ~~~l~~a~G~g~~Gl~~Ap~~ae~lA~~i~g~  645 (676)
T 3ps9_A          614 FDDLFMFAALGSRGLCSAPLCAEILAAQMSDE  645 (676)
T ss_dssp             EEEEEEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEeeeecccccHHHHHHHHHHHHHHHHcCC
Confidence            36999999999999999999999999999865

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.89  E-value=8.1e-22  Score=179.49  Aligned_cols=201  Identities=15%  Similarity=0.139  Sum_probs=147.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEe---CCCc--EEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeEEE
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTIST---KQGD--HLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYL   74 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~--~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~~~   74 (252)
                      |++.|+++|++++++++|++++.+++.|.|.+   .+|.  ++.|+.||||+|+|++.+.+. ++.....++.|.||+++
T Consensus       155 l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~~i~p~rG~~~  234 (501)
T 2qcu_A          155 NAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHI  234 (501)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSSCBCCEEEEEE
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCcccccccceeEEE
Confidence            35678899999999999999998877677776   3563  699999999999999999885 55432468999999999


Q ss_pred             EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952          75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYT  153 (252)
Q Consensus        75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (252)
                      +++... +.....+++.++    ...+++.|..+|.+++|++..... ++.+.   ..+                     
T Consensus       235 ~~~~~~-~~~~~~~~~~~d----g~~~~~~P~~~g~~~iG~t~~~~~~~~~~~---~~~---------------------  285 (501)
T 2qcu_A          235 VVPRVH-TQKQAYILQNED----KRIVFVIPWMDEFSIIGTTDVEYKGDPKAV---KIE---------------------  285 (501)
T ss_dssp             EEECSS-SCSCEEEEECTT----SCEEEEEEETTTEEEEECCCEECCSCGGGC---CCC---------------------
T ss_pred             EECCCC-CCceEEEeecCC----CCEEEEEEcCCCcEEEcCCCCCCCCCcCCC---CCC---------------------
Confidence            987432 111223344222    346888998888999998865421 11111   101                     


Q ss_pred             hhhhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCCCc-----ccceEEE--e---cCCeEEEeccC
Q psy3952         154 RYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL-----VDDFVFH--S---AGRTLHCRNAP  222 (252)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~~p-----~~~~~i~--~---~~~~~~~~G~~  222 (252)
                      .+.++.         +++.++++|| .+...++.+.|+|+||.+  +|+.|     .+++++.  .   .+|++.++|. 
T Consensus       286 ~~~~~~---------l~~~~~~~~p~~l~~~~v~~~~aG~Rp~~--~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg-  353 (501)
T 2qcu_A          286 ESEINY---------LLNVYNTHFKKQLSRDDIVWTYSGVRPLC--DDESDSPQAITRDYTLDIHDENGKAPLLSVFGG-  353 (501)
T ss_dssp             HHHHHH---------HHHHHHHHBSSCCCGGGCCEEEEEEECCB--CCCCSSGGGSCCCCEEEEEEETTEEEEEEEECC-
T ss_pred             HHHHHH---------HHHHHHHhcCCCCCcccEEEEEEEEeeec--CCCCCccccCcCceEEEecccCCCCCeEEEeCc-
Confidence            133443         3489999999 898889999999999987  67665     3567776  3   2578887775 


Q ss_pred             CccccchHHHHHHHHHHHHhhc
Q psy3952         223 SPAATSSLAIAKHILNELRREF  244 (252)
Q Consensus       223 ~~G~t~a~~~g~~va~~i~~~~  244 (252)
                        |+|+++.+|+.+++++.+.+
T Consensus       354 --~~t~~~~~Ae~~~~~~~~~~  373 (501)
T 2qcu_A          354 --KLTTYRKLAEHALEKLTPYY  373 (501)
T ss_dssp             --CGGGHHHHHHHHHHHHGGGS
T ss_pred             --cccchHHHHHHHHHHHHHhh
Confidence              69999999999999999886

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.89  E-value=1e-23  Score=183.34  Aligned_cols=190  Identities=16%  Similarity=0.151  Sum_probs=139.9

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      |.+.|+++|++|++ ++|++++..          + .+.|+.||||+|+|+..+++      ..++.|.||+++.++++.
T Consensus       148 l~~~~~~~Gv~i~~-~~V~~i~~~----------~-~~~a~~VV~A~G~~s~~l~~------~~~l~p~rg~~~~~~~~~  209 (351)
T 3g3e_A          148 LTERLTERGVKFFQ-RKVESFEEV----------A-REGADVIVNCTGVWAGALQR------DPLLQPGRGQIMKVDAPW  209 (351)
T ss_dssp             HHHHHHHTTCEEEE-CCCCCHHHH----------H-HTTCSEEEECCGGGGGGTSC------CTTCEEEEEEEEEEECTT
T ss_pred             HHHHHHHCCCEEEE-EEeCCHHHh----------h-cCCCCEEEECCCcChHhhcC------CCceeecCCcEEEEeCCC
Confidence            35678889999998 899887532          2 36899999999999988742      378899999999987531


Q ss_pred             cccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          81 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                         ++..++...........+|++|..+ ++++|++.+..    +++. ..+.                     +.++  
T Consensus       210 ---~~~~~~~~~~~~~~~~~~y~~p~~~-~~~iGg~~~~~----~~~~-~~~~---------------------~~~~--  257 (351)
T 3g3e_A          210 ---MKHFILTHDPERGIYNSPYIIPGTQ-TVTLGGIFQLG----NWSE-LNNI---------------------QDHN--  257 (351)
T ss_dssp             ---CCSEEEECCTTTCTTCSCEEEECSS-CEEEECCCEET----CCCC-SCCH---------------------HHHH--
T ss_pred             ---cceEEEeccccCCCCceeEEEeCCC-cEEEeeeeecC----CCCC-CCCH---------------------HHHH--
Confidence               3333432211011123578899876 89999876542    1111 1011                     2233  


Q ss_pred             HhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHHHHH
Q psy3952         161 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAKHIL  237 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~~va  237 (252)
                             .+++.+.++||.|...++.+.|+|+||++  || .|+.+++++..   +|+|+++|++|+|+|+||++|+.++
T Consensus       258 -------~l~~~~~~~~P~l~~~~i~~~w~G~r~~t--~D-~p~~~~~ig~~~~~~~~~~~~G~~g~G~~~ap~~g~~la  327 (351)
T 3g3e_A          258 -------TIWEGCCRLEPTLKNARIIGERTGFRPVR--PQ-IRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAA  327 (351)
T ss_dssp             -------HHHHHHHHHCGGGGGCEEEEEEEEEEEEC--SS-CEEEEEEECCSSSCEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhCCCccCCcEeeeeEeeCCCC--CC-ccceeeeccCCCCCCeEEEEeCCCcchHhhhHHHHHHHH
Confidence                   33488999999999899999999999987  88 77666677754   6999999999999999999999999


Q ss_pred             HHHHhhccccccc
Q psy3952         238 NELRREFKLDELS  250 (252)
Q Consensus       238 ~~i~~~~~~~~~~  250 (252)
                      ++|.+.+..++|+
T Consensus       328 ~li~~~~~~~~~~  340 (351)
T 3g3e_A          328 KLFGRILEEKKLS  340 (351)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcccc
Confidence            9999988765543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.88  E-value=8.7e-22  Score=181.87  Aligned_cols=202  Identities=13%  Similarity=0.133  Sum_probs=141.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EEEE-----eCCCcEEEcCEEEEcCCCChHHHHHHcCCCCC-CceeeeeeEEE
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VTIS-----TKQGDHLESSYALVCAGLQADEMALKSGCSLE-PAIVPFRGEYL   74 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~-----t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~-~~~~p~~g~~~   74 (252)
                      ++.|+++|++|+++++|+++.+++++ |.|.     |+++.++.|+.||||+|+|++.+.++.|.... .++.|+||+++
T Consensus       195 ~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~i~p~rG~~l  274 (571)
T 2rgh_A          195 IKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHL  274 (571)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCSSCCCCCBCCEEEEEE
T ss_pred             HHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhccCccCceeeccceEEE
Confidence            46788999999999999999988776 4455     33333699999999999999999988876423 67999999999


Q ss_pred             EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952          75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYT  153 (252)
Q Consensus        75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (252)
                      +++....+.....+++.+..  ....+|+.|. +|.+++|++.+... +..+.   ..+                     
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~--dgr~~~~~P~-~~~~~iG~t~~~~~~~~~~~---~~~---------------------  327 (571)
T 2rgh_A          275 VVDAKKLPVPQPTYFDTGKQ--DGRMVFAIPR-ENKTYFGTTDTDYQGDFTDP---KVT---------------------  327 (571)
T ss_dssp             EEEGGGSCCSSCEEEECSSS--SSCEEEEEEE-TTEEEECCCCEECCSCSSSC---CCC---------------------
T ss_pred             EeccccCCCCcEEEEeccCC--CCcEEEEEEc-CCeEEEcCCCcCCCCCcCCC---CCC---------------------
Confidence            99753211112223332111  1345788886 58899998865421 11111   101                     


Q ss_pred             hhhhHHHHhhhChhHHHHHHHHhccC--CCCCCceecCCcceeEeecCCCC-----cccceEEEec-CCeEEEeccCCcc
Q psy3952         154 RYGSKEMIMSWFPSMRVNELKQYIEE--IEAGDIQRGPSGVRAQALSSSGD-----LVDDFVFHSA-GRTLHCRNAPSPA  225 (252)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~P~--l~~~~i~~~w~G~rp~~~~~d~~-----p~~~~~i~~~-~~~~~~~G~~~~G  225 (252)
                      .++++.+         ++.+.++||.  +...+|.+.|+|+||++  +|+.     ..++++++.. +|+++++|+.   
T Consensus       328 ~~~~~~l---------l~~~~~~~P~~~l~~~~v~~~waG~Rp~~--~d~~~~~~~~~r~~~i~~~~~gl~~v~GGk---  393 (571)
T 2rgh_A          328 QEDVDYL---------LDVINHRYPEANITLADIEASWAGLRPLL--IGNSGSPSTISRGSSLEREPDGLLTLSGGK---  393 (571)
T ss_dssp             HHHHHHH---------HHHHHHHSTTTCCCGGGCCEEEEEEECCB--CC-----------EEEEECTTSCEEEEECC---
T ss_pred             HHHHHHH---------HHHHHHhcCccCCchhceeEEeEEeeecc--CCCCCCcccCCCCcEEecCCCCeEEEeCcc---
Confidence            1334443         4899999997  47788999999999997  5542     2356777654 7999888754   


Q ss_pred             ccchHHHHHHHHHHHHhhc
Q psy3952         226 ATSSLAIAKHILNELRREF  244 (252)
Q Consensus       226 ~t~a~~~g~~va~~i~~~~  244 (252)
                      +|+++.+|+.+++++.+.+
T Consensus       394 ~Tt~r~~Ae~~~~~i~~~l  412 (571)
T 2rgh_A          394 ITDYRKMAEGALRLIRQLL  412 (571)
T ss_dssp             GGGHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHh
Confidence            9999999999999999987

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.88  E-value=2.6e-22  Score=179.41  Aligned_cols=205  Identities=11%  Similarity=0.073  Sum_probs=135.6

Q ss_pred             ChhHHHhCCcEEEeCc---eeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952           1 MGEEFCELGGEIRLNQ---QVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL   76 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~---~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~   76 (252)
                      |.+.++++|++|++++   +|++|..++++|. |+|.+|.++.||.||+|+|+|+..|+. +    ..++.|..++...+
T Consensus       167 L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~-l----~~~~~p~~~~~~~~  241 (438)
T 3dje_A          167 AAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFLD-F----KNQLRPTAWTLVHI  241 (438)
T ss_dssp             HHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTSC-C----TTCCEEEEEEEEEE
T ss_pred             HHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhcC-c----ccceeeEEEEEEEE
Confidence            3567888999999999   9999999888887 999998679999999999999998865 3    24566765554443


Q ss_pred             CCCccc--cc-cceeecCCCCCCCCceeEEEEecC-CcEEEcccceeccccc---CccccccchhHHhhhhcCCCccccc
Q psy3952          77 NPAKQH--LV-RGNIYPVPDPNFPFLGVHFTPRMD-GSVWLGPNAVLAFKKE---GYRWRDFSVRELFSTLRYPGFWRLG  149 (252)
Q Consensus        77 ~~~~~~--~~-~~~i~~~~~~~~~~~~~~~~~~~~-g~~~iG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  149 (252)
                      ......  .. ...++..     ...++|+.|..+ |.+++|..........   .....+.+...       ..     
T Consensus       242 ~l~~~~~~~~~~~p~~~~-----~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~-------~~-----  304 (438)
T 3dje_A          242 ALKPEERALYKNIPVIFN-----IERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEK-------TQ-----  304 (438)
T ss_dssp             ECCGGGHHHHTTCCEEEE-----TTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEECCCCC-------SS-----
T ss_pred             EcChHHhhhhcCCCEEEE-----CCCceecCCCCCCCeEEEEeCCCCccCCccCCCcccccCCccc-------cc-----
Confidence            321100  01 1111111     134677777644 4577752110000000   00000000000       00     


Q ss_pred             hhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccc
Q psy3952         150 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAA  226 (252)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~  226 (252)
                        ...+..+         .+.+.+.++||.|+..++.+.|+|+||.+  ||+.|    +|+..   +|+|+++|++|+||
T Consensus       305 --~~~~~~~---------~l~~~~~~~~P~l~~~~~~~~~~g~~~~t--~D~~p----iig~~p~~~~l~~a~G~~g~G~  367 (438)
T 3dje_A          305 --IPKEAET---------RVRALLKETMPQLADRPFSFARICWCADT--ANREF----LIDRHPQYHSLVLGCGASGRGF  367 (438)
T ss_dssp             --CBHHHHH---------HHHHHHHHHCGGGTTCCCSEEEEEEEEEC--TTSCC----EEEECSSCTTEEEEECCTTCCG
T ss_pred             --CCHHHHH---------HHHHHHHHhCcccccCCcceeeEEEeCcC--CCCCe----EEeecCCCCCEEEEECCCCcch
Confidence              0002222         34478899999999999999999999986  88755    57774   69999999999999


Q ss_pred             cchHHHHHHHHHHHHhhc
Q psy3952         227 TSSLAIAKHILNELRREF  244 (252)
Q Consensus       227 t~a~~~g~~va~~i~~~~  244 (252)
                      +++|++|+.+|++|.+..
T Consensus       368 ~~ap~~g~~la~~i~g~~  385 (438)
T 3dje_A          368 KYLPSIGNLIVDAMEGKV  385 (438)
T ss_dssp             GGTTTHHHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHHHhCCC
Confidence            999999999999998764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.87  E-value=4.2e-22  Score=176.66  Aligned_cols=199  Identities=12%  Similarity=0.083  Sum_probs=133.9

Q ss_pred             hhHHHhCCcEEEeCceeE---------EEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHH-HcCCCCCCceeeeee
Q psy3952           2 GEEFCELGGEIRLNQQVE---------SFKENPESVTISTKQGDHLESSYALVCAGLQADEMAL-KSGCSLEPAIVPFRG   71 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~---------~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~-~~g~~~~~~~~p~~g   71 (252)
                      .+.++++|++++++++|+         +++.++++|.|.|++| ++.||.||+|+|+|+..|.+ ++|+  ..++.|.+|
T Consensus       179 ~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~--~~~~~~~~g  255 (405)
T 3c4n_A          179 AQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGL--HTRHGRAYR  255 (405)
T ss_dssp             HHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC--CCCCEEEEE
T ss_pred             HHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCC--CCCccccee
Confidence            466788899999999999         8887777788888888 89999999999999999998 8887  467899999


Q ss_pred             EEEEeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchh
Q psy3952          72 EYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLK  151 (252)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (252)
                      +++.+..+. ......++        ..++|++|..+|.+++|++....  ..++....-++...    + +..      
T Consensus       256 ~~~~~~~~~-~~~~~~~~--------~~~~y~~p~~~g~~~~G~t~~~~--~~~~~~~~~~~~~~----~-~~~------  313 (405)
T 3c4n_A          256 QFPRLDLLS-GAQTPVLR--------ASGLTLRPQNGGYTLVPAIHHRD--PHGYHPAGGSLTGV----P-TGL------  313 (405)
T ss_dssp             ECCEECSCC-CTTCCEEE--------ETTEEEEEETTEEEEECCCCSCB--CSSCCCCCCCBTTB----C-CSS------
T ss_pred             EEEEECCCC-ccCCCeEE--------CCcEEEEEcCCCeEEEecccccc--ccCcCccccccccc----c-cCC------
Confidence            988876431 11112221        23578899888888898763210  01111000000000    0 000      


Q ss_pred             hhhhhhHHHHhhhChhHHHHHHHHhccCCCCCC---------ceecCCcceeEeecCCCCcccceEEEec-CCeEEEecc
Q psy3952         152 YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGD---------IQRGPSGVRAQALSSSGDLVDDFVFHSA-GRTLHCRNA  221 (252)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~---------i~~~w~G~rp~~~~~d~~p~~~~~i~~~-~~~~~~~G~  221 (252)
                       ..+.++.         +.+. .++||.|...+         +.+.|+|+||++  +|+.|    +|+.. +|+|+++|+
T Consensus       314 -~~~~~~~---------l~~~-~~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~t--~D~~P----~ig~~~~gl~~a~G~  376 (405)
T 3c4n_A          314 -RRELLED---------LVGL-MDAVPALAGEGLELGRSSADVPGAWLALPGGR--PDAPP----QAEELAPGLHLLLGG  376 (405)
T ss_dssp             -CHHHHHH---------HHHH-TTTCGGGGSSCBCCCSSGGGSCEEEEEEGGGC--TTCCC----EEEEEETTEEEEECC
T ss_pred             -CHHHHHH---------HHHH-HHhCCCccccCccccccccceeeEEEeecCcC--CCCCC----EecccCCCeEEEEcc
Confidence             0012222         2233 38999987654         888999999986  88866    46654 799999999


Q ss_pred             CCccccchHHHHHHHHHHHHhh
Q psy3952         222 PSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       222 ~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      +++ +++||++|+.++++|.+.
T Consensus       377 ~g~-~~~ap~~a~~la~~i~~~  397 (405)
T 3c4n_A          377 PLA-DTLGLAAAHELAQRVSAS  397 (405)
T ss_dssp             TTH-HHHHHHHHHHHHHHHHHH
T ss_pred             CcH-HHHHHHHHHHHHHHHhCc
Confidence            876 599999999999999865

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.86  E-value=8.2e-22  Score=171.99  Aligned_cols=183  Identities=18%  Similarity=0.202  Sum_probs=133.2

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK   80 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~   80 (252)
                      |++.|+++|++|++ ++|++++.+          - + .|+.||+|+|+|+..++.+    ...++.|++|+++.++++.
T Consensus       148 l~~~~~~~G~~i~~-~~v~~l~~~----------~-~-~a~~VV~A~G~~s~~l~~~----~~~~~~p~rg~~~~~~~~~  210 (363)
T 1c0p_A          148 LARELQKLGATFER-RTVTSLEQA----------F-D-GADLVVNATGLGAKSIAGI----DDQAAEPIRGQTVLVKSPC  210 (363)
T ss_dssp             HHHHHHHTTCEEEE-CCCSBGGGT----------C-S-SCSEEEECCGGGGGTSBTT----CCTTEEEEEEEEEEEECCC
T ss_pred             HHHHHHHCCCEEEE-EEcccHhhc----------C-c-CCCEEEECCCcchhhccCc----ccCCccccCCeEEEEeCCc
Confidence            35678899999998 999988643          1 2 8999999999999887644    2578999999999886532


Q ss_pred             cccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952          81 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  160 (252)
Q Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (252)
                       . ..  .++....   ..+.|++|..+|++++|++.+..    +++. ..+.                     +.++  
T Consensus       211 -~-~~--~~~~~~~---~~~~y~~p~~~g~~~iG~t~~~~----~~~~-~~~~---------------------~~~~--  255 (363)
T 1c0p_A          211 -K-RC--TMDSSDP---ASPAYIIPRPGGEVICGGTYGVG----DWDL-SVNP---------------------ETVQ--  255 (363)
T ss_dssp             -C-CC--EEECSCT---TCCEEEEEETTTEEEEECCCEET----CCCC-SCCH---------------------HHHH--
T ss_pred             -c-cc--eEeeccC---CCcEEEEEcCCCEEEEEeeeccC----CCCC-CCCH---------------------HHHH--
Confidence             1 11  1222111   12478899888999999886542    1111 1011                     2233  


Q ss_pred             HhhhChhHHHHHHHHhccCC------CCCCceecCCcceeEeecCCCCcccceEEEe--------------------c--
Q psy3952         161 IMSWFPSMRVNELKQYIEEI------EAGDIQRGPSGVRAQALSSSGDLVDDFVFHS--------------------A--  212 (252)
Q Consensus       161 ~~~~~~~~~~~~~~~~~P~l------~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~--------------------~--  212 (252)
                             .+++.+.+++|.+      +..++.+.|+|+||++  +|+.|+.+..++.                    .  
T Consensus       256 -------~l~~~~~~~~P~l~~~~~~~~~~i~~~w~G~rp~t--~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~  326 (363)
T 1c0p_A          256 -------RILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPAR--RGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKE  326 (363)
T ss_dssp             -------HHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEEE--TTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEE
T ss_pred             -------HHHHHHHHhCccccCCcccccceEeeceEEECCCC--CCCceeEEEecccccccccCcccccccccccccccc
Confidence                   3448899999998      4578899999999987  8887754432220                    1  


Q ss_pred             CCeEEEeccCCccccchHHHHHHHHHHHHhhc
Q psy3952         213 GRTLHCRNAPSPAATSSLAIAKHILNELRREF  244 (252)
Q Consensus       213 ~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~~  244 (252)
                      +|+|+++|++|+|+++||++|+.++++|.+++
T Consensus       327 ~~~~~a~G~~g~G~~~a~~~g~~~a~li~~~l  358 (363)
T 1c0p_A          327 VTLVHAYGFSSAGYQQSWGAAEDVAQLVDEAF  358 (363)
T ss_dssp             EEEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCCCcchheeccHHHHHHHHHHHHH
Confidence            68999999999999999999999999999875

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.85  E-value=4.4e-20  Score=177.38  Aligned_cols=213  Identities=15%  Similarity=0.156  Sum_probs=142.6

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA   79 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~   79 (252)
                      |++.|+++|++|+++++|++|+.+++++ .|.|++| +++||.||+|+|+|+..+++++|.  ++|+.|++++++.+.+.
T Consensus       157 L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~--~~pl~p~~g~~~~~~~~  233 (830)
T 1pj5_A          157 LIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGM--AVPLLPLAHQYVKTTPV  233 (830)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTC--CCCCEEEEEEEEEESCC
T ss_pred             HHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCC--CccceeceeEEEEEecC
Confidence            3567889999999999999999887775 5899999 999999999999999999999987  58899999999998753


Q ss_pred             cccccccee----ecCCCCCCCCceeEEEEecCCcEEEcccceec--ccccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952          80 KQHLVRGNI----YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA--FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYT  153 (252)
Q Consensus        80 ~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (252)
                      . .......    ...|........+|++|.. +++++|.+....  ..++....+  .+... +....+...+    .+
T Consensus       234 ~-~~~~~~~~~~~~~~pv~~~~~~~~y~r~~~-~~l~iG~~~~~~~~~~~~~~~~t--~~~~~-~~~~~~~~~~----~~  304 (830)
T 1pj5_A          234 P-AQQGRNDQPNGARLPILRHQDQDLYYREHG-DRYGIGSYAHRPMPVDVDTLGAY--APETV-SEHHMPSRLD----FT  304 (830)
T ss_dssp             G-GGTTTSCTTTCCCSCEEEEGGGTEEEEEET-TEEEEEECCSCCCBCCGGGSCCC--CGGGC-BTTBSTTEEC----CC
T ss_pred             c-ccccccccccCCCCCeEEcCCCCEEEEEeC-CeEEEeccCCCCcccCccccccc--ccccc-cccccccccC----CC
Confidence            1 1100000    0001000012346777764 478888653210  000000000  00000 0000000000    01


Q ss_pred             hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchH
Q psy3952         154 RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSL  230 (252)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~  230 (252)
                      .+.++         .+++.+.+++|.|...++.+.|+|+||++  ||+.|    +|++.   +|+|+++|+   |+++||
T Consensus       305 ~~~~~---------~l~~~~~~~~P~l~~~~i~~~w~G~r~~t--~D~~P----iIG~~p~~~gl~va~G~---G~~~ap  366 (830)
T 1pj5_A          305 LEDFL---------PAWEATKQLLPALADSEIEDGFNGIFSFT--PDGGP----LLGESKELDGFYVAEAV---WVTHSA  366 (830)
T ss_dssp             HHHHH---------HHHHHHHHHCGGGGGSCEEEEEEEEEEEC--TTSCC----EEEECSSSBTEEEEESC---CGGGHH
T ss_pred             HHHHH---------HHHHHHHHhCccccccCcceEEEeecccC--CCCCe----eeccCCCCCCEEEEECc---hHHhhH
Confidence            12233         34588999999999999999999999986  88865    57764   699999986   799999


Q ss_pred             HHHHHHHHHHHhh
Q psy3952         231 AIAKHILNELRRE  243 (252)
Q Consensus       231 ~~g~~va~~i~~~  243 (252)
                      ++|+.+|++|.+.
T Consensus       367 ~~g~~la~li~~~  379 (830)
T 1pj5_A          367 GVAKAMAELLTTG  379 (830)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999865

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.58  E-value=1.2e-07  Score=83.60  Aligned_cols=59  Identities=17%  Similarity=0.246  Sum_probs=49.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE--EEEeCCCc--EEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV--TISTKQGD--HLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~--~V~t~~g~--~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.|++.|++++.+++|++++.+++++  .|.+.+|.  +++||.||+|+|.|+ .+.+++|..
T Consensus       113 ~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s-~l~~~~g~~  175 (421)
T 3nix_A          113 ADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR-VIPRMFGLD  175 (421)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC-HHHHHTTCE
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch-hhHHhcCCC
Confidence            456778899999999999999887764  57788885  599999999999999 677888763

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.28  E-value=3e-05  Score=69.09  Aligned_cols=58  Identities=14%  Similarity=-0.023  Sum_probs=46.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--eC-CCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--TK-QGD--HLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t~-~g~--~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.|++.|++++.+++|+++..+++++. |.  +. +|.  +++||.||.|.|.++. +.+.+|.
T Consensus       107 ~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~-vr~~l~~  170 (453)
T 3atr_A          107 LKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS-FRSKLPP  170 (453)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT-TGGGSCT
T ss_pred             HHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh-hHHhcCC
Confidence            4567788999999999999998887754 43  33 563  6999999999999986 6666775

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.16  E-value=8.6e-06  Score=74.94  Aligned_cols=59  Identities=20%  Similarity=0.368  Sum_probs=50.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEe--CCC-cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTIST--KQG-DHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t--~~g-~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++|+.+++|++++.++++++|++  .+| .+++|++||.|.|.+| .+.+++|+.
T Consensus       155 ~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S-~vR~~lGi~  216 (570)
T 3fmw_A          155 AEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS-TVRRLAADR  216 (570)
T ss_dssp             HHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC-HHHHHTTCC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc-hHHHHcCCC
Confidence            4567778999999999999999888888766  677 6899999999999999 688888873

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.15  E-value=3.9e-06  Score=74.28  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~   60 (252)
                      .+.+++.|++++++++|++++.++++|.|+|.+| ++.||.||+|+|.|+          ..+++.+|.
T Consensus       139 ~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~  206 (417)
T 3v76_A          139 MAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGL  206 (417)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTC
T ss_pred             HHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCC
Confidence            4567788999999999999999888899999999 999999999999998          578888886

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.08  E-value=2.4e-05  Score=67.56  Aligned_cols=58  Identities=7%  Similarity=0.161  Sum_probs=45.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--eC-CCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--TK-QGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t~-~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      ++.|++.|++++.+++|+++..+++.+. +.  .+ ++.+++|+.||-|.|.+|. +.+.+|.
T Consensus       109 ~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~-vr~~~g~  170 (397)
T 3oz2_A          109 AALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESE-FGRWAGL  170 (397)
T ss_dssp             HHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCH-HHHHHTC
T ss_pred             HHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccccH-HHHHcCC
Confidence            5678889999999999999998887754 32  22 2236999999999999985 6677775

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.05  E-value=2.5e-05  Score=70.68  Aligned_cols=58  Identities=16%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.|++.|++++++ +|++++.++++  +.|++.+|.+++||.||.|+|.||..+.+++|.
T Consensus       180 ~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~  239 (511)
T 2weu_A          180 SEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGG  239 (511)
T ss_dssp             HHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             HHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCC
Confidence            45677889999999 99999985544  568888886799999999999999765555664

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.05  E-value=9.6e-06  Score=72.28  Aligned_cols=60  Identities=23%  Similarity=0.321  Sum_probs=52.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~~   61 (252)
                      .+.+++.|++|+++++|+++..++++ +.|++.+|.++.|+.||+|+|.|+          ..+++.+|..
T Consensus       141 ~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          141 LTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             HHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence            45677899999999999999987777 779988885599999999999999          6788889863

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.03  E-value=0.00019  Score=64.87  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=49.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc---EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGD---HLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~---~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|++|+.+++|++++.++++++|++.++.   +++|++||.|.|.+|. +.+++|+
T Consensus       114 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~-VR~~lg~  174 (499)
T 2qa2_A          114 EEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST-VRKAAGF  174 (499)
T ss_dssp             HHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH-HHHHTTC
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH-HHHHcCC
Confidence            45677889999999999999998888888776653   6999999999999986 7777886

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.03  E-value=6.1e-05  Score=69.56  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=47.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEEEEeC-CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVTISTK-QG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~V~t~-~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.|++.|++++++++|+++..+ ++.+.|.+. +|  .++.||.||.|+|.+|. +.+.+|.
T Consensus       135 ~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~-lr~~lg~  196 (591)
T 3i3l_A          135 LDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGP-ISRKLGV  196 (591)
T ss_dssp             HHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCH-HHHHHTC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcch-hHHHcCC
Confidence            45678899999999999999976 455777765 55  47999999999999985 6666775

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.98  E-value=6.2e-05  Score=66.78  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=49.9

Q ss_pred             cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC-C-----CCceeeeeeEEEEeCC
Q psy3952          10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS-L-----EPAIVPFRGEYLLLNP   78 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~-~-----~~~~~p~~g~~~~~~~   78 (252)
                      ++|+++++|++|+.++++|+|+|.+|.++.||+||+|+.++.-  .+.+..+ .     .++..++...++.++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~--~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~  320 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAA--AGMLSELPAISHLKNMHSTSVANVALGFPE  320 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHH--HHHTTTSTTHHHHHTCEEEEEEEEEEEESS
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHH--HHHcCCchhhHHHhcCCCCceEEEEEEECc
Confidence            6999999999999988889999999877999999999998862  2333211 0     2355565555666654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.97  E-value=1.3e-05  Score=70.55  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc----CCeEEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN----PESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~----~~~~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~~   61 (252)
                      .+.+++.|++++++++|+++..+    +++|.|++++| +++||.||+|+|.|+          ..+++.+|..
T Consensus       116 ~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~  188 (401)
T 2gqf_A          116 KSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (401)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             HHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCC
Confidence            45677889999999999999977    56789999888 899999999999998          5788888863

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.84  E-value=2.3e-05  Score=70.50  Aligned_cols=51  Identities=22%  Similarity=0.347  Sum_probs=43.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCCh
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      |++.++++|++|+++++|++|..++++++ |++.+|+++.||.||.+++++.
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             HHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            35678899999999999999999999976 8999988899999999999885

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.82  E-value=4.6e-05  Score=69.37  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=50.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCC----eEEEEeCCC---cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPE----SVTISTKQG---DHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~----~~~V~t~~g---~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++++++++|++++.+++    +|+|++.++   .+++|++||.|.|.|| .+.+++|++
T Consensus       127 ~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S-~vR~~lgi~  192 (535)
T 3ihg_A          127 LAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS-LVRESLGIG  192 (535)
T ss_dssp             HHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC-HHHHHTTCC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc-hHHHHcCCC
Confidence            4677888999999999999999887    887765543   5899999999999999 788888873

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.74  E-value=0.00027  Score=62.97  Aligned_cols=66  Identities=14%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC-C----CCceeeeeeEEEEeCC
Q psy3952          10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS-L----EPAIVPFRGEYLLLNP   78 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~-~----~~~~~p~~g~~~~~~~   78 (252)
                      ++|+++++|++|+.++++|+|+|.+| ++.||+||+|+++|.-  .+++..+ .    .++..++...++.++.
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~--~~ll~~~~~~~~~~~~~~~~~~v~l~~~~  319 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQV--VQLLPDAHLPELEQLTTHSTATVTMIFDQ  319 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHH--HHHCTTSCCHHHHTCCEEEEEEEEEEEEC
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHH--HHHcCccCHHHHhcCCCCeEEEEEEEECC
Confidence            69999999999999988999999999 8999999999999862  2223211 0    2455666666666654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.73  E-value=4.7e-05  Score=66.43  Aligned_cols=59  Identities=10%  Similarity=0.102  Sum_probs=50.9

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCeE--EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPESV--TISTKQGDHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~--~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++. |++++++++|++++.++++|  .|++.+|.+++||.||.|.|.||. +.+++|..
T Consensus       114 ~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~  175 (399)
T 2x3n_A          114 LEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY-VRRRLLDI  175 (399)
T ss_dssp             HHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH-HHHHTSCC
T ss_pred             HHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH-HHHHhCCC
Confidence            4556677 99999999999999988888  898888878999999999999997 67778763

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.72  E-value=6.1e-05  Score=58.20  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+++.|++++++ +|++++.+++++.|++++| ++.||.||+|+|.++. +.+.+|+
T Consensus        64 ~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~-~~~~~g~  118 (180)
T 2ywl_A           64 AHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT-LPSLLGL  118 (180)
T ss_dssp             HHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH-HHHHHTC
T ss_pred             HHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC-ccccCCC
Confidence            4577889999999 9999998877889999999 9999999999999984 6677775

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.71  E-value=3.5e-05  Score=67.65  Aligned_cols=51  Identities=16%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      |++.++++|++|+++++|++|+.++++|+ |.++.+ ++.||.||+|+|+|..
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~-~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILIENGKAAGIIADDR-IHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECSCHHHH
T ss_pred             HHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCE-EEECCEEEECCCHHHH
Confidence            35677889999999999999999888886 888744 8999999999999964

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.71  E-value=2.7e-05  Score=68.48  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      ++.++++|++|+++++|++|+.++++| |.++.+ ++.||.||+|+|+|.  +.++++
T Consensus       196 ~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~g~-~~~ad~Vv~a~~~~~--~~~ll~  249 (421)
T 3nrn_A          196 ERIIMENKGKILTRKEVVEINIEEKKV-YTRDNE-EYSFDVAISNVGVRE--TVKLIG  249 (421)
T ss_dssp             HHHHHTTTCEEESSCCEEEEETTTTEE-EETTCC-EEECSEEEECSCHHH--HHHHHC
T ss_pred             HHHHHHCCCEEEcCCeEEEEEEECCEE-EEeCCc-EEEeCEEEECCCHHH--HHHhcC
Confidence            566788899999999999999988899 876655 899999999999985  334554

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.70  E-value=0.0001  Score=67.33  Aligned_cols=59  Identities=24%  Similarity=0.484  Sum_probs=49.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHH---HHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADE---MALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~---l~~~~g~   60 (252)
                      .+.+++.|++|+++++|++|+.+++++ .|++.+|.++.|+.||+|+|.|+..   ++...|+
T Consensus       227 ~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi  289 (549)
T 3nlc_A          227 RATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGV  289 (549)
T ss_dssp             HHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTC
T ss_pred             HHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCC
Confidence            456778899999999999999888765 4888888679999999999999973   4455665

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.66  E-value=0.00015  Score=65.55  Aligned_cols=59  Identities=22%  Similarity=0.402  Sum_probs=49.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc---EEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGD---HLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~---~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      .+.+++.|++|+.+++|++++.++++++|++.++.   +++|++||.|.|.+|. +.+++|+.
T Consensus       113 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~-VR~~lg~~  174 (500)
T 2qa1_A          113 EQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS-VRKAAGFD  174 (500)
T ss_dssp             HHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCH-HHHHTTCC
T ss_pred             HHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchH-HHHHcCCC
Confidence            45677889999999999999998888887765553   6999999999999985 77778863

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.50  E-value=6.8e-05  Score=66.88  Aligned_cols=53  Identities=9%  Similarity=0.132  Sum_probs=44.2

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEc--CCeE-EEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKEN--PESV-TISTKQGDHLESSYALVCAGLQADEM   54 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l   54 (252)
                      |++.++++|++|+++++|++|..+  ++++ .|.|+ |.++.||+||+|+|+|+..+
T Consensus       248 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~-g~~~~ad~VV~a~~~~~~~l  303 (453)
T 2bcg_G          248 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-LGTFKAPLVIADPTYFPEKC  303 (453)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-TEEEECSCEEECGGGCGGGE
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC-CeEEECCEEEECCCccchhh
Confidence            356678899999999999999987  7775 57786 44899999999999997644

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.48  E-value=0.00084  Score=58.60  Aligned_cols=55  Identities=13%  Similarity=0.246  Sum_probs=45.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc-CC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS-GC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~-g~   60 (252)
                      +.+++  ++|+++++|++++.++++|+|++.+|.+++||.||.|.|.+|.. .+.+ |.
T Consensus       135 ~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~v-r~~l~~~  190 (407)
T 3rp8_A          135 DYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL-RPWVLGF  190 (407)
T ss_dssp             HHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSS-HHHHHSS
T ss_pred             HhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHH-HHHhcCC
Confidence            34444  88999999999999999999999888789999999999999863 3334 65

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.39  E-value=0.00015  Score=65.00  Aligned_cols=50  Identities=16%  Similarity=0.194  Sum_probs=41.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEE-cCCe-EEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKE-NPES-VTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~-~~~~-~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      |++.++++|++|+.+++|++|.. ++++ +.|+|.+|.++.||+||+|+|.+
T Consensus       262 L~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          262 FSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            35778899999999999999998 6666 45999888679999999999998

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.39  E-value=0.00019  Score=61.00  Aligned_cols=50  Identities=6%  Similarity=0.005  Sum_probs=45.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++.|++++.+++|++++.+++.|. |+|++| ++.+|+||+|+|.|+..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~  134 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEA  134 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGB
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCC
Confidence            456788999999999999999999999 999999 99999999999998753

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.38  E-value=0.00011  Score=65.51  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++.+++.|++|+++++|++|+.++++ |.|+|+++ ++.||+||+|+++|.
T Consensus       241 ~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~-~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          241 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS-SLEADHVISAIPASV  290 (477)
T ss_dssp             HHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSC-EEEESEEEECSCHHH
T ss_pred             HHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCe-EEEcCEEEECCCHHH
Confidence            45667789999999999999988776 99988777 899999999999885

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.32  E-value=0.00039  Score=57.96  Aligned_cols=69  Identities=9%  Similarity=0.040  Sum_probs=48.9

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeE-EEEeC---------CC-----cEEEcCEEEEcCC------CChHHHHHHcCC
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESV-TISTK---------QG-----DHLESSYALVCAG------LQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~-~V~t~---------~g-----~~i~A~~VV~AaG------~ws~~l~~~~g~   60 (252)
                      +.+.+ .|++++++++|+++..+++++ .|.+.         +|     .++.||.||+|+|      .|+..++..+++
T Consensus       127 ~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~~g~  206 (284)
T 1rp0_A          127 SKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGM  206 (284)
T ss_dssp             HHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTS
T ss_pred             HHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHHHhhhccC
Confidence            44544 699999999999999877764 34331         21     4799999999999      555566655564


Q ss_pred             CCCCceeeeeeEE
Q psy3952          61 SLEPAIVPFRGEY   73 (252)
Q Consensus        61 ~~~~~~~p~~g~~   73 (252)
                        ..++.|.+|.+
T Consensus       207 --~~~v~~~~g~~  217 (284)
T 1rp0_A          207 --IDHVPGMKALD  217 (284)
T ss_dssp             --SSCCCCCEEEC
T ss_pred             --CCCcCCcCCch
Confidence              35677777743

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.31  E-value=0.00027  Score=63.41  Aligned_cols=50  Identities=14%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++.+++.| ++|+++++|++|+.+++++.|++.+|.++.||+||+|+|++.
T Consensus       262 ~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          262 WEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            44566778 999999999999998888999998886799999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.30  E-value=0.00036  Score=60.65  Aligned_cols=58  Identities=19%  Similarity=0.340  Sum_probs=49.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH-HHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-MALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~-l~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++++.|.+.+|.++.||.||+|+|.+.+. +++.+|+
T Consensus       195 ~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~  253 (384)
T 2v3a_A          195 AGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGL  253 (384)
T ss_dssp             HHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCC
Confidence            456788999999999999998777788888888789999999999999764 7777775

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.27  E-value=0.00036  Score=59.82  Aligned_cols=49  Identities=18%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.++++|.|.+.+| ++.+|+||+|+|.++.
T Consensus        96 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           96 VVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             HHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence            346778999999999999998877899999888 8999999999999863

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.27  E-value=0.00016  Score=66.06  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             hhHHHhC-CcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCEL-GGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++. |++++++ +|++++.++++  +.|.+.+|.++.||.||.|+|.|+..+.+++|.
T Consensus       201 ~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~  261 (550)
T 2e4g_A          201 RRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEE  261 (550)
T ss_dssp             HHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             HHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCC
Confidence            4567777 9999999 99999886544  568888886799999999999999765666664

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.26  E-value=0.00011  Score=65.20  Aligned_cols=52  Identities=15%  Similarity=0.224  Sum_probs=43.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEM   54 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l   54 (252)
                      ++.++++|++|+++++|++|..+++++. |.++ |.++.||+||+|+|+|+..+
T Consensus       241 ~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~-g~~~~ad~VV~a~~~~~~~~  293 (433)
T 1d5t_A          241 ARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSE-GEVARCKQLICDPSYVPDRV  293 (433)
T ss_dssp             HHHHHHHTCCCBCSCCCCEEEEETTEEEEEEET-TEEEECSEEEECGGGCGGGE
T ss_pred             HHHHHHcCCEEECCCEEEEEEEeCCEEEEEEEC-CeEEECCEEEECCCCCcccc
Confidence            4567788999999999999998888876 6664 44899999999999998643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.14  E-value=0.00068  Score=54.70  Aligned_cols=50  Identities=10%  Similarity=0.002  Sum_probs=41.3

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++. |++++. ++|+++..+++++ .|.+.+|.++.||.||+|+|.|+..
T Consensus        76 ~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           76 YLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             HHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred             HHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence            456676 999984 7999999877774 5888888679999999999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.13  E-value=0.001  Score=58.37  Aligned_cols=58  Identities=14%  Similarity=0.290  Sum_probs=49.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.++++|++++++++|++++.+++++ .|.+.+|.++.||.||+|+|.+.+ .+++.+|+
T Consensus       202 ~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl  261 (415)
T 3lxd_A          202 AEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGA  261 (415)
T ss_dssp             HHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTC
T ss_pred             HHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCC
Confidence            45678899999999999999877776 588888878999999999999876 47777776

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.09  E-value=0.00057  Score=62.01  Aligned_cols=59  Identities=24%  Similarity=0.331  Sum_probs=49.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe----EEEEeCCCc-EEEcCEEEEcCCCChHH--HHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES----VTISTKQGD-HLESSYALVCAGLQADE--MALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~----~~V~t~~g~-~i~A~~VV~AaG~ws~~--l~~~~g~   60 (252)
                      .+.+++.|++++++++|++++.++++    +.|++.+|. ++.||.||+|+|.+.+.  +++.+|+
T Consensus       262 ~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          262 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             HHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTC
T ss_pred             HHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCC
Confidence            34577899999999999999986554    678888885 69999999999999765  6677775

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.05  E-value=0.00092  Score=59.70  Aligned_cols=58  Identities=12%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++++++|++++.++++++|.+.+|.++.||.||+|+|.+.+ .+++.+|+
T Consensus       210 ~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl  268 (472)
T 3iwa_A          210 HDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGL  268 (472)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTC
T ss_pred             HHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCc
Confidence            45778999999999999999877777777777768999999999999864 57777775

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.05  E-value=0.00095  Score=58.38  Aligned_cols=58  Identities=16%  Similarity=0.300  Sum_probs=49.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.++++|++++++++|++++.+++++ .|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       192 ~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl  251 (404)
T 3fg2_P          192 DRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGL  251 (404)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTC
T ss_pred             HHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCC
Confidence            45678899999999999999877765 488888878999999999999865 47777776

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.04  E-value=0.00037  Score=63.42  Aligned_cols=58  Identities=19%  Similarity=0.214  Sum_probs=46.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.|++.|++++.+ +|++++.++++  +.|.+.+|.++.||.||.|+|.|+..+.+++|.
T Consensus       172 ~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~  231 (538)
T 2aqj_A          172 KRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKE  231 (538)
T ss_dssp             HHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCC
T ss_pred             HHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCC
Confidence            45677889999999 89999886543  568888886799999999999999765555664

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.04  E-value=0.00091  Score=60.48  Aligned_cols=58  Identities=12%  Similarity=0.111  Sum_probs=45.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE---EEEeCCCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV---TISTKQGD--HLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~~g~--~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|++++.+++|+++..+++++   .+.+.+|.  +++||.||.|+|.++. +.+.+|.
T Consensus       118 ~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~-vr~~lg~  180 (512)
T 3e1t_A          118 LRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR-VSQAVGE  180 (512)
T ss_dssp             HHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS-SGGGTCC
T ss_pred             HHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH-HHHHcCC
Confidence            456778999999999999999988764   45556663  7999999999999985 4455564

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.95  E-value=0.0011  Score=59.70  Aligned_cols=58  Identities=12%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH-HHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-MALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~-l~~~~g~   60 (252)
                      +.++++|++++++++|++|+.+++...|.+.+|.++.||.||+|+|.+.+. +++.+|+
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~  323 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGG  323 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTC
T ss_pred             HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCC
Confidence            356788999999999999986654445777777689999999999999764 8888886

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=96.95  E-value=0.00052  Score=62.28  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             hhHHHh-CCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCE-LGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~-~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.|++ .|++++.+ +|++++.++++  +.|.+.+|.+++||.||.|+|.||..+.+++|.
T Consensus       182 ~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~  242 (526)
T 2pyx_A          182 TEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQV  242 (526)
T ss_dssp             HHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCC
T ss_pred             HHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCC
Confidence            456777 89999999 69999886544  357787765799999999999999755666664

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.94  E-value=0.0012  Score=57.07  Aligned_cols=55  Identities=16%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|++++.+++|++++. ++  .|++.+|.++.||.||.|.|.++. +.++++.
T Consensus       114 ~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s~-vr~~l~~  168 (379)
T 3alj_A          114 VNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGSK-VRDSIGF  168 (379)
T ss_dssp             HHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTCH-HHHHHCC
T ss_pred             HHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccHH-HHHHhcC
Confidence            4567788999999999999987 33  778877868999999999999985 6666764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.93  E-value=0.0011  Score=60.74  Aligned_cols=51  Identities=22%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE---EEEeCCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV---TISTKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~---~V~t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+++++|++|..++ +++   .+.+.+|.  .+.|+.||+|+|.|+.
T Consensus       257 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          257 RKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            456788899999999999999877 654   34444663  5899999999999985

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.93  E-value=0.00082  Score=58.99  Aligned_cols=46  Identities=22%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.| +|+++++|++|+.++++++|+|.+|.+++||+||+|+|+..
T Consensus       214 ~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~  259 (431)
T 3k7m_X          214 SQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNT  259 (431)
T ss_dssp             HTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGG
T ss_pred             HhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcch
Confidence            44567 99999999999988888999998885699999999999653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.92  E-value=0.001  Score=60.15  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=39.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE--eCCC-cEEEcC-EEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS--TKQG-DHLESS-YALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~--t~~g-~~i~A~-~VV~AaG~ws~   52 (252)
                      .+.++++|++|+++++|++|..+ ++++. |.  .+.+ .+|.|+ .||+|+|.|+.
T Consensus       209 ~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          209 VETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence            46678899999999999999987 45543 43  3322 259995 99999999983

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.91  E-value=0.0015  Score=59.80  Aligned_cols=51  Identities=10%  Similarity=0.107  Sum_probs=40.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE---EEEeCCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV---TISTKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~---~V~t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+++++|++|..++ +++   .+.+.+|.  +|.|+.||+|+|.|+.
T Consensus       262 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          262 YDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            456788999999999999999876 553   34443563  5899999999999974

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.88  E-value=0.0012  Score=56.12  Aligned_cols=45  Identities=13%  Similarity=0.233  Sum_probs=39.6

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~   49 (252)
                      +++.|++|+++++|++|++++++|+|++.+|.++.||.||+|+.+
T Consensus       119 ~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          119 LKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             HHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            344599999999999999998899999988856999999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.85  E-value=0.0012  Score=59.54  Aligned_cols=51  Identities=25%  Similarity=0.343  Sum_probs=44.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++.|++++++++|++|+.+++++.|.+.+|.++.||.||+|+|.+.+.
T Consensus       231 ~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          231 ESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            456789999999999999998777788888777689999999999999764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.85  E-value=0.0013  Score=57.09  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeEEEEe-CCCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESVTIST-KQGD--HLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~~V~t-~~g~--~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+.+.|++++.+++|++++.++ +.+.|++ .+|.  +++||.||.|.|.+|. +.+.++.
T Consensus       110 ~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~-vr~~l~~  171 (394)
T 1k0i_A          110 MEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI-SRQSIPA  171 (394)
T ss_dssp             HHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS-TGGGSCG
T ss_pred             HHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH-HHHhcCc
Confidence            355677899999999999998764 4577765 6774  5999999999999996 5566664

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.81  E-value=0.0022  Score=58.91  Aligned_cols=51  Identities=22%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE---EEEeCCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV---TISTKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~---~V~t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+++++|++|..++ +++   .+.+.+|.  +|.|+.||+|+|.|+.
T Consensus       262 ~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          262 WDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            456788999999999999998776 553   34443562  5899999999999984

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=96.79  E-value=0.0032  Score=57.92  Aligned_cols=60  Identities=23%  Similarity=0.265  Sum_probs=46.0

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcC-CeEE-EEeCC------C---------cEEEcCEEEEcCCCChH---HHHHHcCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENP-ESVT-ISTKQ------G---------DHLESSYALVCAGLQAD---EMALKSGC   60 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~t~~------g---------~~i~A~~VV~AaG~ws~---~l~~~~g~   60 (252)
                      |.+.|++.|++|+.+++|+++..++ +.+. |.+.+      |         .+++||.||.|.|.++.   .+.+.+|+
T Consensus       150 L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl  229 (584)
T 2gmh_A          150 MGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDL  229 (584)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTT
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCC
Confidence            3567788899999999999999876 4454 77652      2         47999999999999985   44444565

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.77  E-value=0.0023  Score=54.01  Aligned_cols=49  Identities=18%  Similarity=0.378  Sum_probs=42.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++++.+++.|.|.+.+|.++.+|+||+|+|..+
T Consensus        73 ~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           73 EQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             HHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred             HHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCC
Confidence            4566779999999999999988778999998886899999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.75  E-value=0.0018  Score=56.84  Aligned_cols=58  Identities=22%  Similarity=0.417  Sum_probs=48.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.++++|++++++++|++++.++....|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       193 ~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl  251 (410)
T 3ef6_A          193 GLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGL  251 (410)
T ss_dssp             HHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCC
Confidence            45678899999999999998766545788888878999999999999876 47777876

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.75  E-value=0.00091  Score=59.68  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=39.5

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      |++|+++++|++|+.++++++|+|.+|.+++||+||+|++++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  270 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGV  270 (472)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHH
T ss_pred             ccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHH
Confidence            7899999999999999888999999887899999999999864

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.72  E-value=0.0029  Score=57.73  Aligned_cols=55  Identities=20%  Similarity=0.418  Sum_probs=43.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC---C--cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALKSGCS   61 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~---g--~~i~A~~VV~AaG~ws~~l~~~~g~~   61 (252)
                      +.+++.   |+.+++|++++.++++|+|++.+   |  .+++||+||.|.|.+|. +.+++|+.
T Consensus       146 ~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~lg~~  205 (549)
T 2r0c_A          146 EAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP-TRKALGID  205 (549)
T ss_dssp             HHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH-HHHHHTCC
T ss_pred             HHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH-HHHHcCCC
Confidence            445554   88999999999988888765433   5  46999999999999997 77778763

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.70  E-value=0.0018  Score=58.26  Aligned_cols=58  Identities=24%  Similarity=0.340  Sum_probs=48.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.++++|++++++++|++++.+++.+.|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       234 ~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          234 EKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL  292 (493)
T ss_dssp             HHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTC
T ss_pred             HHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCC
Confidence            45678899999999999998777777788888878999999999999865 36666665

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.69  E-value=0.0021  Score=58.60  Aligned_cols=50  Identities=14%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             hHHHhCCc--EEEeCceeEEEEEcCC--eEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGG--EIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~--~i~~~~~V~~i~~~~~--~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|+  .++++++|++++.+++  .|.|++.+|.++.||+||+|+|.++.
T Consensus        95 ~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~  148 (540)
T 3gwf_A           95 DVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSA  148 (540)
T ss_dssp             HHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCS
T ss_pred             HHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCccccc
Confidence            34677888  8999999999988664  79999999967999999999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.63  E-value=0.0026  Score=57.01  Aligned_cols=58  Identities=10%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH---HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM---ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l---~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++++.|.+.+|.++.||.||+|+|...+.-   ++.+|+
T Consensus       240 ~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~  300 (484)
T 3o0h_A          240 DAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGV  300 (484)
T ss_dssp             HHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTC
T ss_pred             HHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCc
Confidence            4577889999999999999988888888888887899999999999876432   344554

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.62  E-value=0.0018  Score=57.37  Aligned_cols=49  Identities=18%  Similarity=0.102  Sum_probs=40.7

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCC---Cc---EEEcCEEEEcCCCChH
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQ---GD---HLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~---g~---~i~A~~VV~AaG~ws~   52 (252)
                      .+++.+..++.+++|++++..+++|.|++.+   |.   ++.+|.||+|+|.++.
T Consensus       124 ~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          124 YAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             HHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSS
T ss_pred             HHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCC
Confidence            3455578899999999999888889887754   65   6999999999999874

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.62  E-value=0.002  Score=57.39  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=43.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++++++|++++.+++.+.|.++++ ++.||.||+|+|.+.+
T Consensus       224 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~~-~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          224 AAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHG-ELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHTTCEEETTCCEEEEEEETTEEEEEETTE-EEEESEEEECSCEEES
T ss_pred             HHHHhCCCEEEcCCEEEEEEEeCCEEEEEECCc-EEEcCEEEECCCCCcC
Confidence            457789999999999999998777778888766 8999999999999975

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.60  E-value=0.0022  Score=56.92  Aligned_cols=51  Identities=22%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.++++|++++++++|++++.+++++.|++.+|.++.+|.||+|+|.+.+.
T Consensus       216 ~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          216 RVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence            456788999999999999998877788887777689999999999998754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.60  E-value=0.0028  Score=58.92  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=46.2

Q ss_pred             hhHHHhCCc--EEEeCceeEEEEEcCC----eEEEEeC------CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           2 GEEFCELGG--EIRLNQQVESFKENPE----SVTISTK------QG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~--~i~~~~~V~~i~~~~~----~~~V~t~------~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      .+.+++.|+  +|+.+++|++++.+++    +++|+..      +|  .+++|++||.|.|.+|. +.+++|+
T Consensus       148 ~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~lg~  219 (639)
T 2dkh_A          148 LERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN-VRRAIGR  219 (639)
T ss_dssp             HHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH-HHHHTTC
T ss_pred             HHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH-HHHHhCC
Confidence            466788887  9999999999998752    4666432      44  46999999999999996 7777886

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.59  E-value=0.0028  Score=55.15  Aligned_cols=51  Identities=10%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG   59 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g   59 (252)
                      .|++++.+++|++++.++++|+|++.+|.++.||.||.|.|.+|. +.+.++
T Consensus       110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~~~  160 (397)
T 2vou_A          110 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV-VRKRLL  160 (397)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH-HHHHHH
T ss_pred             CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh-HHHHhc
Confidence            489999999999999988889999888878999999999999985 445555

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.57  E-value=0.0022  Score=57.90  Aligned_cols=47  Identities=19%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++|+++++|++|+.++++|+|.+.+|.++.||+||+|++++.
T Consensus       222 ~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          222 MDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HHHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            44558999999999999988888999998887899999999999986

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.54  E-value=0.0025  Score=57.28  Aligned_cols=58  Identities=14%  Similarity=0.261  Sum_probs=47.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEEcCEEEEcCCCChHH--H-HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQADE--M-ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~A~~VV~AaG~ws~~--l-~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++ .+.|++.+|.++.||.||+|+|.+.+.  | ++.+|+
T Consensus       239 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl  300 (490)
T 1fec_A          239 EQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV  300 (490)
T ss_dssp             HHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCc
Confidence            457789999999999999998764 477888888679999999999998764  3 455554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.52  E-value=0.0029  Score=52.72  Aligned_cols=48  Identities=13%  Similarity=0.251  Sum_probs=40.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|+++++ ++|++++.+++.|.|.+.+|.++.+|+||+|+|.+.
T Consensus        78 ~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           78 KHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             HHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC
Confidence            456778999999 999999998888999998876899999999999984

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.50  E-value=0.0045  Score=54.61  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=47.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEE--cCCeE-EEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKE--NPESV-TISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~--~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++++++|++++.  +++++ .|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       199 ~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl  260 (431)
T 1q1r_A          199 HLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGL  260 (431)
T ss_dssp             HHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTC
T ss_pred             HHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCC
Confidence            456788999999999999987  55555 588888878999999999998854 57777776

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.50  E-value=0.0022  Score=55.78  Aligned_cols=44  Identities=5%  Similarity=0.125  Sum_probs=39.6

Q ss_pred             CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +++++.+++|++++.++++|+|++.+|.+++||.||.|.|.+|.
T Consensus       140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          140 NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            36889999999999988889999888878999999999999984

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.48  E-value=0.0034  Score=52.34  Aligned_cols=48  Identities=15%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++. ++|++++.+++.|.|.+.+|.++.+|+||+|+|.++
T Consensus        67 ~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           67 EQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             HHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCC
Confidence            346678999988 899999988888888777776899999999999865

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.46  E-value=0.0037  Score=52.38  Aligned_cols=47  Identities=23%  Similarity=0.324  Sum_probs=41.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +.+++.|++++.+++|++++..++ .|.|.+.+| ++.+|+||+|+|.+
T Consensus        75 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           75 EQMAKFDQTICLEQAVESVEKQADGVFKLVTNEE-THYSKTVIITAGNG  122 (332)
T ss_dssp             HHHTTSCCEEECSCCEEEEEECTTSCEEEEESSE-EEEEEEEEECCTTS
T ss_pred             HHHHHhCCcEEccCEEEEEEECCCCcEEEEECCC-EEEeCEEEECCCCC
Confidence            456678999999999999998876 799999999 79999999999994

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.46  E-value=0.0048  Score=56.84  Aligned_cols=52  Identities=10%  Similarity=0.037  Sum_probs=40.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeE-EEE---eCCCc--EEEcCEEEEcCCCChHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQGD--HLESSYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~V~---t~~g~--~i~A~~VV~AaG~ws~~   53 (252)
                      .+.+++.|++|+++++|+++..+ ++++ .|.   +.+|.  .+.|+.||+|+|.|+..
T Consensus       150 ~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            45677889999999999999985 5543 233   24563  58999999999999853

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.43  E-value=0.0052  Score=52.49  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=42.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++++..++ .|.|.+.+|.++.+|+||+|+|..+
T Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           82 AQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            456678999999999999998765 6889998887899999999999854

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.43  E-value=0.0032  Score=57.49  Aligned_cols=49  Identities=24%  Similarity=0.352  Sum_probs=41.9

Q ss_pred             HHHhCCc--EEEeCceeEEEEEcCC--eEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           4 EFCELGG--EIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~--~i~~~~~V~~i~~~~~--~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+++.|+  .++.+++|++++.+++  .|+|++.+|.++.||+||+|+|.++.
T Consensus       108 ~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~  160 (549)
T 4ap3_A          108 VADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSN  160 (549)
T ss_dssp             HHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEE
T ss_pred             HHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCC
Confidence            4677787  8999999999987654  79999999977999999999998763

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.42  E-value=0.0026  Score=56.19  Aligned_cols=46  Identities=20%  Similarity=0.228  Sum_probs=40.0

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++|+++++|++|+.++++ |.|+|+.+ ++.||+||+|++++.
T Consensus       222 ~~~lg~~i~~~~~V~~i~~~~~~~v~v~~~~~-~~~ad~VI~a~p~~~  268 (453)
T 2yg5_A          222 AEALGDDVFLNAPVRTVKWNESGATVLADGDI-RVEASRVILAVPPNL  268 (453)
T ss_dssp             HHHHGGGEECSCCEEEEEEETTEEEEEETTTE-EEEEEEEEECSCGGG
T ss_pred             HHhcCCcEEcCCceEEEEEeCCceEEEEECCe-EEEcCEEEEcCCHHH
Confidence            45568999999999999998888 99988544 899999999999974

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.41  E-value=0.0031  Score=56.17  Aligned_cols=57  Identities=14%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEE-eCCCcEEEcCEEEEcCCCChHHH---HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTIS-TKQGDHLESSYALVCAGLQADEM---ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~-t~~g~~i~A~~VV~AaG~ws~~l---~~~~g~   60 (252)
                      +.+++.|++++++++|++++.++++ +.|. +++| ++.||.||+|+|.+.+..   ++.+|+
T Consensus       219 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g-~i~aD~Vv~a~G~~p~~~~l~l~~~g~  280 (463)
T 4dna_A          219 AAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG-EIVADQVMLALGRMPNTNGLGLEAAGV  280 (463)
T ss_dssp             HHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC-EEEESEEEECSCEEESCTTSSTGGGTC
T ss_pred             HHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC-eEEeCEEEEeeCcccCCCCCCccccCc
Confidence            4577899999999999999987655 6788 9999 599999999999986543   344554

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.38  E-value=0.0026  Score=55.66  Aligned_cols=46  Identities=17%  Similarity=0.136  Sum_probs=40.3

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.+.+++++++|++|+.++++|.|+|++| ++.||+||+|++++.
T Consensus       213 ~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~  258 (424)
T 2b9w_A          213 NATLEHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEK  258 (424)
T ss_dssp             HHHSSSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHH
T ss_pred             HHhhcceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHH
Confidence            4455778899999999998888899999999 799999999999974

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.37  E-value=0.0053  Score=54.42  Aligned_cols=49  Identities=8%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++..++++.|.+++| ++.||.||+|+|...+
T Consensus       197 ~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          197 KSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             HHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence            456788999999999999998777788888888 9999999999998653

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.35  E-value=0.0051  Score=57.43  Aligned_cols=51  Identities=16%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-E--E-eCCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-I--S-TKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V--~-t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+++++|+++..+++++. |  . +.+|.  .+.|+.||+|+|.|+.
T Consensus       165 ~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  221 (660)
T 2bs2_A          165 ANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence            4567788999999999999987766532 3  2 35663  3999999999999984

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.31  E-value=0.0059  Score=56.62  Aligned_cols=51  Identities=4%  Similarity=0.002  Sum_probs=40.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--e-CCCc--EEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t-~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+++++|+++..+++++. |.  + .+|.  .+.|+.||+|+|.|+.
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            4556788999999999999988776542 33  2 4563  5899999999999985

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.29  E-value=0.0029  Score=53.34  Aligned_cols=48  Identities=13%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.++ |++++.+++.|+|.+ +|.++.+|+||+|+|.++.
T Consensus        78 ~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           78 KQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK  125 (333)
T ss_dssp             HHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred             HHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence            45678899999986 999998888888888 5558999999999999863

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.28  E-value=0.0045  Score=51.57  Aligned_cols=49  Identities=16%  Similarity=0.129  Sum_probs=41.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcC---CeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENP---ESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~---~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+.++.+.   +.|.|.+.+|.++.+|+||+|+|.+.
T Consensus        64 ~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            44667899999999999997653   36889988886899999999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.24  E-value=0.0018  Score=57.57  Aligned_cols=47  Identities=15%  Similarity=0.205  Sum_probs=38.2

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEe---CCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++..|++|+++++|++|+.++++|.|++   .+|.++.||+||+|++++.
T Consensus       245 ~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~  294 (478)
T 2ivd_A          245 AASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHA  294 (478)
T ss_dssp             HHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHH
T ss_pred             HHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHH
Confidence            3445889999999999998888888887   5665799999999999985

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.19  E-value=0.0045  Score=56.46  Aligned_cols=54  Identities=9%  Similarity=0.172  Sum_probs=41.5

Q ss_pred             hCCcEEEeCceeEEEEEcC-CeE-EEEe-CC--C--cEEEcC-EEEEcCCC-ChHHHHHHcCC
Q psy3952           7 ELGGEIRLNQQVESFKENP-ESV-TIST-KQ--G--DHLESS-YALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~-~~~-~V~t-~~--g--~~i~A~-~VV~AaG~-ws~~l~~~~g~   60 (252)
                      +.|++|++++.|++|..++ +++ .|+. .+  |  .++.|+ .||+|||+ |+..|+...|+
T Consensus       221 ~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi  283 (546)
T 2jbv_A          221 QENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI  283 (546)
T ss_dssp             CTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             CCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence            5799999999999999876 554 3543 22  4  368998 99999999 58888776553

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.19  E-value=0.0093  Score=54.29  Aligned_cols=58  Identities=16%  Similarity=0.380  Sum_probs=47.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEE-------------------cCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKE-------------------NPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~-------------------~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++++++|++++.                   .++++.+.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       200 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~  277 (565)
T 3ntd_A          200 QAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL  277 (565)
T ss_dssp             HHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTC
T ss_pred             HHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCc
Confidence            456789999999999999987                   45667777777768999999999999865 56666665

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.18  E-value=0.0057  Score=56.79  Aligned_cols=48  Identities=17%  Similarity=0.116  Sum_probs=39.3

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++ .|++++ +++|+++..+++++ .|.|.+|..+.|+.||+|+|.|+
T Consensus       132 e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          132 TALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            34555 699995 57999999887765 58888886799999999999985

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.17  E-value=0.0074  Score=55.88  Aligned_cols=48  Identities=15%  Similarity=0.115  Sum_probs=39.3

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++ .|++++ +++|+++..+++++ .|.|.+|..+.|+.||+|+|.|+
T Consensus       131 ~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          131 KVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             HHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            34555 599995 57999999888775 48888887899999999999873

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.11  E-value=0.0039  Score=56.18  Aligned_cols=51  Identities=14%  Similarity=0.023  Sum_probs=40.8

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc---CCeEEEEe--C-CC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN---PESVTIST--K-QG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~---~~~~~V~t--~-~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++++++++|++++.+   ++.|.|.+  . +|  .++.||.||.|+|.++.
T Consensus       173 ~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          173 LKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            35567789999999999999874   34577765  4 55  46999999999999984

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.10  E-value=0.0099  Score=52.93  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc-EEEcCEEEEcCCCChHH--H-HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADE--M-ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~-~i~A~~VV~AaG~ws~~--l-~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++++.|++.+|. ++.+|.||+|+|...+.  | ++.+|+
T Consensus       215 ~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~  276 (463)
T 2r9z_A          215 ENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGI  276 (463)
T ss_dssp             HHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCC
Confidence            4567889999999999999987767888888896 69999999999988654  3 445554

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.09  E-value=0.0051  Score=54.88  Aligned_cols=50  Identities=22%  Similarity=0.359  Sum_probs=39.8

Q ss_pred             HHHhCCcE--EEeCceeEEEEEcCC--eEEEEeCC---C--cEEEcCEEEEcCCCChHH
Q psy3952           4 EFCELGGE--IRLNQQVESFKENPE--SVTISTKQ---G--DHLESSYALVCAGLQADE   53 (252)
Q Consensus         4 ~a~~~G~~--i~~~~~V~~i~~~~~--~~~V~t~~---g--~~i~A~~VV~AaG~ws~~   53 (252)
                      .+++.|++  ++.+++|++++..++  +|+|++.+   |  .++.+|+||+|+|.|+..
T Consensus       110 ~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p  168 (464)
T 2xve_A          110 RVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTP  168 (464)
T ss_dssp             HHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSB
T ss_pred             HHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCC
Confidence            45667888  899999999998765  78887643   3  479999999999987643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.09  E-value=0.0072  Score=54.98  Aligned_cols=49  Identities=16%  Similarity=0.301  Sum_probs=40.4

Q ss_pred             HHhCC--cEEEeCceeEEEEEcC--CeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           5 FCELG--GEIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         5 a~~~G--~~i~~~~~V~~i~~~~--~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +++.+  ..++++++|++++.++  +.|+|++.+|.+++||+||+|+|.++..
T Consensus       104 ~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p  156 (542)
T 1w4x_A          104 ADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVP  156 (542)
T ss_dssp             HHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCC
T ss_pred             HHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCC
Confidence            44544  6789999999998754  4799999888789999999999998743

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.09  E-value=0.0047  Score=55.73  Aligned_cols=57  Identities=18%  Similarity=0.311  Sum_probs=42.7

Q ss_pred             hHHHhCC-cEEEeCceeEEEEEcC-C-eE-EEEe--CCC-----cEEEcCEEEEcCCCC-hHHHHHHcC
Q psy3952           3 EEFCELG-GEIRLNQQVESFKENP-E-SV-TIST--KQG-----DHLESSYALVCAGLQ-ADEMALKSG   59 (252)
Q Consensus         3 ~~a~~~G-~~i~~~~~V~~i~~~~-~-~~-~V~t--~~g-----~~i~A~~VV~AaG~w-s~~l~~~~g   59 (252)
                      +.|+++| ++|++++.|++|..++ + ++ .|+.  .+|     .++.|+.||+|||++ +..|+...|
T Consensus       229 ~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          229 AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             HHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence            4566675 9999999999999875 3 33 3544  344     368999999999998 677766655

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.06  E-value=0.0088  Score=55.23  Aligned_cols=52  Identities=8%  Similarity=-0.020  Sum_probs=40.7

Q ss_pred             hhHHHhCC-cEEEeCceeEEEEEcCCeE---EEE-eCCCc--EEEcCEEEEcCCCChHH
Q psy3952           2 GEEFCELG-GEIRLNQQVESFKENPESV---TIS-TKQGD--HLESSYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~---~V~-t~~g~--~i~A~~VV~AaG~ws~~   53 (252)
                      .+.+++.| ++++++++|+++..+++++   .+. +.+|.  .+.|+.||+|+|.|+..
T Consensus       141 ~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          141 FQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             HHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence            35567788 9999999999999877753   222 35673  59999999999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.06  E-value=0.0085  Score=55.57  Aligned_cols=49  Identities=10%  Similarity=0.179  Sum_probs=39.8

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++ .|++++. .+|+++..+++++. |.|.+|..+.|+.||+|+|.|+.
T Consensus       125 ~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          125 RIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             HHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             HHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence            34555 4999975 58999988888775 88888878999999999999854

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=96.05  E-value=0.0035  Score=56.07  Aligned_cols=50  Identities=12%  Similarity=-0.045  Sum_probs=39.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeE---EEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESV---TISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      .+.+++.|++++++++| ++..+++++   .+.+.+| ++.|+.||+|+|.++..
T Consensus       126 ~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          126 LKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             HHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCCGGG
T ss_pred             HHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCCccc
Confidence            35567789999999999 998777764   2334556 78899999999999853

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.03  E-value=0.005  Score=55.59  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=42.5

Q ss_pred             hHHHhCC-cEEEeCceeEEEEEcC-C-eE-EEEe--CCC-----cEEEcCEEEEcCCCC-hHHHHHHcC
Q psy3952           3 EEFCELG-GEIRLNQQVESFKENP-E-SV-TIST--KQG-----DHLESSYALVCAGLQ-ADEMALKSG   59 (252)
Q Consensus         3 ~~a~~~G-~~i~~~~~V~~i~~~~-~-~~-~V~t--~~g-----~~i~A~~VV~AaG~w-s~~l~~~~g   59 (252)
                      ..|++.| ++|+++++|++|..++ + ++ .|+.  .+|     .++.|+.||+|||++ +..|+...|
T Consensus       234 ~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          234 AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             HHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence            4456664 9999999999999876 3 33 3543  244     368999999999998 777776655

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.99  E-value=0.01  Score=52.60  Aligned_cols=58  Identities=14%  Similarity=0.221  Sum_probs=46.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChHH--H-HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADE--M-ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~~--l-~~~~g~   60 (252)
                      +.+++.|++++++++|++++.++++ +.|.+.+|.++.||.||+|+|...+.  | ++.+|+
T Consensus       216 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl  277 (450)
T 1ges_A          216 EVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGV  277 (450)
T ss_dssp             HHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCc
Confidence            4567889999999999999986544 77888888679999999999987653  3 455564

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=95.98  E-value=0.0078  Score=54.75  Aligned_cols=58  Identities=16%  Similarity=0.233  Sum_probs=42.9

Q ss_pred             hHHHh-CCcEEEeCceeEEEEEcCCeEE-EEeCC---Cc--EE---EcCEEEEcCCCC-hHHHHHHcCC
Q psy3952           3 EEFCE-LGGEIRLNQQVESFKENPESVT-ISTKQ---GD--HL---ESSYALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t~~---g~--~i---~A~~VV~AaG~w-s~~l~~~~g~   60 (252)
                      +.+++ .|++|++++.|++|..+++++. |+..+   |.  ++   .++.||+|||+| +..|+...|+
T Consensus       203 ~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGi  271 (546)
T 1kdg_A          203 QTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGI  271 (546)
T ss_dssp             HHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTB
T ss_pred             HHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCC
Confidence            34444 5999999999999998776643 65432   52  34   889999999997 5677776665

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.95  E-value=0.013  Score=52.59  Aligned_cols=58  Identities=17%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEEcCEEEEcCCCChHH--H-HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQADE--M-ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~A~~VV~AaG~ws~~--l-~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++ .+.|++.+|.++.||.||+|+|...+.  | ++.+|+
T Consensus       243 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl  304 (495)
T 2wpf_A          243 KQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGV  304 (495)
T ss_dssp             HHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTC
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCc
Confidence            456789999999999999998754 477888888689999999999987653  3 344554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=95.92  E-value=0.014  Score=53.07  Aligned_cols=52  Identities=4%  Similarity=-0.047  Sum_probs=39.6

Q ss_pred             ChhHHHh-CCcEEEeCceeEEEEE-cCC------eE-EEEe---CCCc--EEEcCEEEEcCCCChH
Q psy3952           1 MGEEFCE-LGGEIRLNQQVESFKE-NPE------SV-TIST---KQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         1 l~~~a~~-~G~~i~~~~~V~~i~~-~~~------~~-~V~t---~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      |.+.+++ .|++|+++++|+++.. +++      ++ .|.+   .+|.  .+.|+.||+|+|.|+.
T Consensus       144 L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          144 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            3566777 6999999999999998 434      43 2433   2563  6899999999999985

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.91  E-value=0.0063  Score=55.48  Aligned_cols=50  Identities=8%  Similarity=0.117  Sum_probs=41.1

Q ss_pred             HHHhCCc--EEEeCceeEEEEEcC--CeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           4 EFCELGG--EIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         4 ~a~~~G~--~i~~~~~V~~i~~~~--~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      .+++.|+  .++.+++|++++.++  +.|.|++.+|.++.||+||+|+|.++..
T Consensus        96 ~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A           96 AADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSAS  149 (545)
T ss_dssp             HHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC-
T ss_pred             HHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCC
Confidence            3566676  788999999998754  4799999998779999999999988643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.90  E-value=0.014  Score=51.11  Aligned_cols=54  Identities=17%  Similarity=0.313  Sum_probs=44.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++++++|++++ + +  .|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       195 ~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl  249 (408)
T 2gqw_A          195 RYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGVLANDALARAAGL  249 (408)
T ss_dssp             HHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCEEECCHHHHHHTC
T ss_pred             HHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCCCccHHHHHhCCC
Confidence            45678899999999999998 3 3  566777768999999999998865 57777776

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.85  E-value=0.0067  Score=52.91  Aligned_cols=56  Identities=18%  Similarity=0.254  Sum_probs=42.2

Q ss_pred             hHHHh-CC-cEEEeCceeEEEEEcCCeEEEEeCC---C--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           3 EEFCE-LG-GEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~-~G-~~i~~~~~V~~i~~~~~~~~V~t~~---g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      +.+++ .| ++++.+++|++++. +++|+|.+.+   |  .++.||.||.|.|.+|. +.+.++.
T Consensus       115 ~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~-vR~~l~~  177 (410)
T 3c96_A          115 AAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSA-VRAHLHP  177 (410)
T ss_dssp             HHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCH-HHHHHCT
T ss_pred             HHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccch-hHHHhcC
Confidence            44554 36 48999999999998 6677776543   5  47999999999999985 4555543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.84  E-value=0.012  Score=48.39  Aligned_cols=47  Identities=9%  Similarity=0.044  Sum_probs=39.2

Q ss_pred             HHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           4 EFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .+++. +++++. ++|++++.+++.|.|.+.+|.++.+|+||+|+|.+.
T Consensus        65 ~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           65 QIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             HHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEE
T ss_pred             HHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCC
Confidence            44555 777765 599999998888999998886799999999999964

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.79  E-value=0.01  Score=49.67  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=40.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++. ++|++++.+++.|.|.++.+ ++.+|+||+|+|.+..
T Consensus        80 ~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~~-~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           80 DHAANYAKIREG-VEVRSIKKTQGGFDIETNDD-TYHAKYVIITTGTTHK  127 (319)
T ss_dssp             HHHHTTSEEEET-CCEEEEEEETTEEEEEESSS-EEEEEEEEECCCEEEC
T ss_pred             HHHHHcCCEEEE-eeEEEEEEeCCEEEEEECCC-EEEeCEEEECCCCCcc
Confidence            456778999987 79999998888888888655 8999999999998753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.73  E-value=0.01  Score=53.96  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=42.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC---eE-EEEe--CCCc--EE---EcCEEEEcCCCC-hHHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE---SV-TIST--KQGD--HL---ESSYALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~---~~-~V~t--~~g~--~i---~A~~VV~AaG~w-s~~l~~~~g~   60 (252)
                      ..+++.|++|++++.|++|..+++   ++ .|+.  .+|.  ++   .++.||+|||++ +..|+...|+
T Consensus       202 ~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi  271 (536)
T 1ju2_A          202 NKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (536)
T ss_dssp             GGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             hhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence            445678999999999999998763   43 3543  3453  34   578999999997 6777666554

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.70  E-value=0.014  Score=55.50  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      ...|++|+++++|++|+.++++|+|+|.+|.++.||+||+|+.+.
T Consensus       540 La~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~  584 (776)
T 4gut_A          540 LAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLA  584 (776)
T ss_dssp             HHTTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHH
T ss_pred             HHhCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHH
Confidence            345899999999999999888899999888679999999999764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.69  E-value=0.012  Score=52.58  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=44.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++.+.|.++++ ++.||.||+|+|...+ .+++.+|+
T Consensus       235 ~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~-~i~~D~vi~a~G~~p~~~~l~~~g~  292 (480)
T 3cgb_A          235 KEADKHHIEILTNENVKAFKGNERVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGTNI  292 (480)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSBEEEEEETTE-EEECSEEEECSCEEESCGGGTTSCC
T ss_pred             HHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCC-EEEcCEEEECcCCCcChHHHHhCCc
Confidence            457789999999999999987643345777766 8999999999999864 35554554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.64  E-value=0.011  Score=53.41  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=41.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEc---CCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKEN---PESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~---~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|+.+..+   ++.|.|++.+|.++.+|+||+|+|.+..
T Consensus       275 ~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          275 AHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             HHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             HHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            4567889999999999999754   3368899888878999999999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.016  Score=51.76  Aligned_cols=58  Identities=12%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe--EEEEeCCC-cEEEcCEEEEcCCCChHH-H-HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES--VTISTKQG-DHLESSYALVCAGLQADE-M-ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g-~~i~A~~VV~AaG~ws~~-l-~~~~g~   60 (252)
                      +.+++.|++++++++|++++.++++  +.|.+.+| .++.||.||+|+|...+. | ++.+|+
T Consensus       234 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl  296 (479)
T 2hqm_A          234 DHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI  296 (479)
T ss_dssp             HHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC
T ss_pred             HHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc
Confidence            4567889999999999999876554  67888777 689999999999976543 4 344554

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.60  E-value=0.012  Score=49.31  Aligned_cols=48  Identities=6%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEc--CCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKEN--PES-VTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~--~~~-~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++. ++|++++.+  ++. |.|.+.+|.++.+|+||+|+|.+.
T Consensus        73 ~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           73 QQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            456788999987 689999887  544 777776776899999999999875

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.52  E-value=0.0091  Score=53.25  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=39.1

Q ss_pred             HHhCC-cEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCCh
Q psy3952           5 FCELG-GEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws   51 (252)
                      +++.+ ++|+.+++|++|+.++++|.|++.+|   .+++||+||+|+.++.
T Consensus       246 ~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~  296 (489)
T 2jae_A          246 QDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHL  296 (489)
T ss_dssp             HHHHCGGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHH
T ss_pred             HHhcCCCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHH
Confidence            33445 78999999999999999999887665   5799999999998763

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.43  E-value=0.02  Score=53.25  Aligned_cols=50  Identities=10%  Similarity=0.079  Sum_probs=38.9

Q ss_pred             hHHHhC-Cc-EEEeCceeEEEEEcCC---eEE-EE---eCCCc--EEEcCEEEEcCCCChH
Q psy3952           3 EEFCEL-GG-EIRLNQQVESFKENPE---SVT-IS---TKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~-G~-~i~~~~~V~~i~~~~~---~~~-V~---t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      +.+++. |+ +|+++++|+++..+++   ++. |.   +.+|.  .|.|+.||+|+|.|+.
T Consensus       159 ~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          159 EAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             HHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence            456676 99 9999999999998766   543 33   24452  5899999999999985

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.38  E-value=0.025  Score=50.23  Aligned_cols=50  Identities=12%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC-C--Cc--EEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK-Q--GD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~-~--g~--~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|++. +  |.  ++.+|.||+|+|...+
T Consensus       218 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          218 RALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred             HHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence            4567889999999999999987777776654 4  65  7999999999998764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.32  E-value=0.033  Score=49.22  Aligned_cols=49  Identities=20%  Similarity=0.523  Sum_probs=40.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++.+++++. |.+ +|.++.||.||+|+|...+
T Consensus       199 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          199 KDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             HHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence            456789999999999999987666665 666 5558999999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.27  E-value=0.025  Score=50.25  Aligned_cols=58  Identities=16%  Similarity=0.106  Sum_probs=43.5

Q ss_pred             hHH-HhCCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChHH-H--HHHcCC
Q psy3952           3 EEF-CELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQADE-M--ALKSGC   60 (252)
Q Consensus         3 ~~a-~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~~-l--~~~~g~   60 (252)
                      +.+ ++.|++++++++|++++.+++++.|.+.  +|  .++.||.||+|+|...+. +  ++.+|+
T Consensus       223 ~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl  288 (468)
T 2qae_A          223 GALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINV  288 (468)
T ss_dssp             HHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTC
T ss_pred             HHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCC
Confidence            446 7889999999999999987766666543  44  479999999999988653 2  455554

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.26  E-value=0.03  Score=50.26  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=42.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcE-EEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDH-LESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~-i~A~~VV~AaG~ws~~   53 (252)
                      +.++++|++++++++|++++.+++ .+.|.+.+|.+ +.||.||+|+|.-.+.
T Consensus       225 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          225 NDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            456789999999999999987653 47788878866 9999999999987653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.26  E-value=0.019  Score=48.07  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=40.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEe---CCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.++ |++++.+++.|.+.+   +++..+.+|+||+|+|.+.
T Consensus        92 ~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           92 EQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             HHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             HHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            45778899999988 999998888898877   3555799999999999864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.25  E-value=0.029  Score=49.94  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEE-----eCCCcEEEcCEEEEcCCCChHH-H--HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTIS-----TKQGDHLESSYALVCAGLQADE-M--ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~-----t~~g~~i~A~~VV~AaG~ws~~-l--~~~~g~   60 (252)
                      +.+++.|++++++++|++++.++++ +.|+     +.++.++.||.||+|+|...+. +  ++.+|+
T Consensus       228 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~  294 (474)
T 1zmd_A          228 RILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGI  294 (474)
T ss_dssp             HHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTC
T ss_pred             HHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCC
Confidence            4567899999999999999987765 6665     3555579999999999987643 2  445554

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.23  E-value=0.036  Score=48.09  Aligned_cols=46  Identities=11%  Similarity=0.197  Sum_probs=38.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +.++++|++++.+++|++|+.++.  +|++.+|.++.+|++|+|+|..
T Consensus        70 ~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           70 DWYEKNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             HHHHHTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCCC
Confidence            346688999999999999987765  4667777789999999999973

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.19  E-value=0.017  Score=51.16  Aligned_cols=46  Identities=11%  Similarity=0.108  Sum_probs=37.2

Q ss_pred             HHHhCCcEEEeCceeEEEEEc---CCeE--EEEeCCCc----EEEcCEEEEcCCC
Q psy3952           4 EFCELGGEIRLNQQVESFKEN---PESV--TISTKQGD----HLESSYALVCAGL   49 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~---~~~~--~V~t~~g~----~i~A~~VV~AaG~   49 (252)
                      .+++.|++++++++|++++..   ++.|  .|.+.+|.    ++.+|+||+|+|.
T Consensus       136 ~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          136 VASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            355678999999999999876   4444  67776664    7999999999997

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.19  E-value=0.029  Score=52.06  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcC--CeEE-EEeCCCcEEEcCEEEEcCCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENP--ESVT-ISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~-V~t~~g~~i~A~~VV~AaG~   49 (252)
                      |++.++.+|++++++++|.+|..++  ++++ |.+.+|.++.|++||..+..
T Consensus       384 L~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~  435 (650)
T 1vg0_A          384 FCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY  435 (650)
T ss_dssp             HHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGG
T ss_pred             HHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhh
Confidence            3567889999999999999998876  6654 66677878999999885543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.16  E-value=0.014  Score=52.51  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             cEEEeCceeEEEEEc-CCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952          10 GEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus        10 ~~i~~~~~V~~i~~~-~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      ++|+++++|++|..+ ++++.|+|.+|.++.||+||+|++++.-
T Consensus       215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l  258 (516)
T 1rsg_A          215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL  258 (516)
T ss_dssp             GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHH
T ss_pred             CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHh
Confidence            579999999999986 5679999988867999999999987653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.14  E-value=0.019  Score=48.44  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=38.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEE-EeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTI-STKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V-~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.++ |++++. ++.|.| .+.+|.++.+|+||+|+|.+.
T Consensus        79 ~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           79 EQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             HHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence            34667899999887 999987 556888 787776899999999999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.95  E-value=0.027  Score=51.58  Aligned_cols=56  Identities=20%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++.+++|++++.++++  |.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus       236 ~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~  292 (588)
T 3ics_A          236 EHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQPESSLAKGAGL  292 (588)
T ss_dssp             HHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCCChHHHHhcCc
Confidence            4567899999999999999876554  55566668999999999999865 36666665

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.84  E-value=0.028  Score=50.22  Aligned_cols=58  Identities=17%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC----CcEEEcCEEEEcCCCChHH--H-HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQ----GDHLESSYALVCAGLQADE--M-ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~----g~~i~A~~VV~AaG~ws~~--l-~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++++.|.+.+    |.++.||.||+|+|...+.  + ++.+|+
T Consensus       234 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl  298 (482)
T 1ojt_A          234 KQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV  298 (482)
T ss_dssp             HHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTC
T ss_pred             HHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCc
Confidence            45678899999999999999877776666544    6579999999999987643  2 455554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.84  E-value=0.048  Score=45.17  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=42.9

Q ss_pred             HHHh-CCcEEEeCceeEEEEEcCCeEEEEeC---CCc--EEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           4 EFCE-LGGEIRLNQQVESFKENPESVTISTK---QGD--HLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~--~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      .+.+ .|++++.+++|++++.+++...|.+.   +|.  ++.+|.||+|+|...+ .+++.+|+
T Consensus       198 ~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~  261 (323)
T 3f8d_A          198 TVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGI  261 (323)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTC
T ss_pred             HHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCe
Confidence            3444 49999999999999887554445443   253  6999999999999876 67777765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.83  E-value=0.027  Score=46.91  Aligned_cols=47  Identities=11%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.++ |+.++.+++.|.| +.+|.++.+|+||+|+|.+.
T Consensus        70 ~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           70 EHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence            35677899999886 9999887778888 55555899999999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.74  E-value=0.036  Score=49.06  Aligned_cols=50  Identities=20%  Similarity=0.379  Sum_probs=40.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC---CCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|++.   ++.++.+|.||+|+|...+
T Consensus       219 ~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          219 KRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred             HHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence            4567889999999999999987777666542   3447999999999998764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.68  E-value=0.049  Score=48.39  Aligned_cols=50  Identities=18%  Similarity=0.197  Sum_probs=40.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC--CC-cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK--QG-DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g-~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|...  +| .++.+|.||+|+|.-.+
T Consensus       229 ~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~  281 (476)
T 3lad_A          229 KILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV  281 (476)
T ss_dssp             HHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence            4567889999999999999988777665543  33 47999999999997643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.61  E-value=0.042  Score=48.45  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=39.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++.++..+.|.++.+ ++.||.||+|+|...+
T Consensus       199 ~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~-~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          199 EEMEANNITIATGETVERYEGDGRVQKVVTDKN-AYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHTTTEEEEESCCEEEEECSSBCCEEEESSC-EEECSEEEECSCEEES
T ss_pred             HHHHhCCCEEEcCCEEEEEEccCcEEEEEECCC-EEECCEEEECcCCCCC
Confidence            456788999999999999987633235777655 8999999999998764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.57  E-value=0.042  Score=48.88  Aligned_cols=51  Identities=24%  Similarity=0.289  Sum_probs=40.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEE--cCCeEEEEeC-----CCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKE--NPESVTISTK-----QGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~--~~~~~~V~t~-----~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.+++.|++++++++|++++.  +++.+.|.+.     ++.++.+|.||+|+|...+.
T Consensus       232 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence            456788999999999999987  5666666543     34479999999999987653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=94.53  E-value=0.073  Score=45.19  Aligned_cols=58  Identities=14%  Similarity=0.183  Sum_probs=42.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeE-EE--EeCCC--cEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESV-TI--STKQG--DHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~-~V--~t~~g--~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +..++.|++++.+++|++++.+++++ .|  .+.+|  ..+.+|.||+|+|...+ .+++.+|+
T Consensus       210 ~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~  273 (360)
T 3ab1_A          210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDL  273 (360)
T ss_dssp             HHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSC
T ss_pred             HHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhcc
Confidence            44567899999999999999876653 33  33355  47999999999998764 35554543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.52  E-value=0.05  Score=48.23  Aligned_cols=58  Identities=26%  Similarity=0.382  Sum_probs=43.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC-CC--cEEEcCEEEEcCCCChHH-H--HHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK-QG--DHLESSYALVCAGLQADE-M--ALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~-~g--~~i~A~~VV~AaG~ws~~-l--~~~~g~   60 (252)
                      +.+++.|++++++++|++++.+++++.|... +|  .++.+|.||+|+|...+. +  ++.+|+
T Consensus       220 ~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl  283 (464)
T 2a8x_A          220 KQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV  283 (464)
T ss_dssp             HHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTC
T ss_pred             HHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCC
Confidence            4567889999999999999987766666542 44  479999999999987543 2  344554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=94.50  E-value=0.027  Score=48.82  Aligned_cols=57  Identities=14%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      ..+++|++++.++++..++.+++...|.+.+|+++.+|.|+.|+|.-++.+++..|+
T Consensus       211 ~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl  267 (401)
T 3vrd_B          211 GTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASL  267 (401)
T ss_dssp             TSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHHTTC
T ss_pred             HHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhhccc
Confidence            345789999999999999988777778899998899999999999888888877775

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.43  E-value=0.039  Score=49.23  Aligned_cols=46  Identities=22%  Similarity=0.428  Sum_probs=37.4

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCc----EEEcCEEEEcCCCCh
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGD----HLESSYALVCAGLQA   51 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~----~i~A~~VV~AaG~ws   51 (252)
                      +..+.+|+.+++|++|+.++++|.|++.+|.    ++.||+||+|++++.
T Consensus       249 ~~l~~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~  298 (498)
T 2iid_A          249 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRA  298 (498)
T ss_dssp             HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHH
T ss_pred             HhcccccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHH
Confidence            3444589999999999998888988876652    489999999999863

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.36  E-value=0.074  Score=48.84  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=40.1

Q ss_pred             HhCCcEEEeCceeEEEEEc----CCeEE-EEe--CCC--cEEEcC-EEEEcCCCC-hHHHHHHcCC
Q psy3952           6 CELGGEIRLNQQVESFKEN----PESVT-IST--KQG--DHLESS-YALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~----~~~~~-V~t--~~g--~~i~A~-~VV~AaG~w-s~~l~~~~g~   60 (252)
                      ++.+.+|++++.|++|..+    +++++ |+.  .+|  .++.|+ -||+|||+. |.+|+...|+
T Consensus       238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI  303 (583)
T 3qvp_A          238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  303 (583)
T ss_dssp             TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence            4569999999999999887    45433 542  345  357887 599999887 6777766554

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.25  E-value=0.084  Score=43.83  Aligned_cols=50  Identities=12%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCC----C--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESV-TISTKQ----G--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~----g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++.+++++ .|...+    |  .++.||.||+|+|.-.+
T Consensus       192 ~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          192 DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             HHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred             HhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence            34567899999999999999876553 243321    3  47999999999997654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.23  E-value=0.068  Score=47.14  Aligned_cols=45  Identities=11%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeC---CCc--EEEcCEEEEcCCCChH
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTK---QGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .|++++.+++|++++.++++|.|.+.   +|.  ++.||.||+|+|.-.+
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence            69999999999999988888877654   553  3999999999998755

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.15  E-value=0.036  Score=48.17  Aligned_cols=52  Identities=13%  Similarity=0.294  Sum_probs=42.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS   58 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~   58 (252)
                      +.+++.|++++++++|++++.+  +  |.+.+|.++.||.||+|+|...+.+...+
T Consensus       226 ~~l~~~gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G~~~~~~l~~~  277 (409)
T 3h8l_A          226 SIYNQLGIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPPYTGNPALKNS  277 (409)
T ss_dssp             HHHHHHTCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECCEECCHHHHTS
T ss_pred             HHHHHCCCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCCCCccHHHHhc
Confidence            4567889999999999998643  2  66667768999999999999887776655

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.10  E-value=0.098  Score=47.58  Aligned_cols=50  Identities=8%  Similarity=-0.008  Sum_probs=43.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      .+..++.|+++++++.|++++..++.+.|.+.++..+.+|.|++|+|--.
T Consensus       270 ~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          270 KLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccC
Confidence            35678899999999999999999998888887776899999999999754

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.01  E-value=0.068  Score=47.74  Aligned_cols=50  Identities=14%  Similarity=0.338  Sum_probs=39.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC--C-C--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK--Q-G--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~-g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|...  + |  .++.+|.||+|+|.-.+
T Consensus       247 ~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          247 RMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred             HHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence            4567889999999999999988877665432  1 3  47999999999998654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.87  E-value=0.054  Score=47.99  Aligned_cols=50  Identities=20%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC---CC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK---QG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++.+++++.|...   +|  .++.+|.||+|+|...+
T Consensus       226 ~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          226 RSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred             HHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence            4567889999999999999877666665532   23  47999999999998764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=93.86  E-value=0.043  Score=51.19  Aligned_cols=51  Identities=8%  Similarity=0.055  Sum_probs=38.7

Q ss_pred             hhHHHhC--CcEEEeCceeEEEEEcCC---eEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCEL--GGEIRLNQQVESFKENPE---SVT-IS---TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~--G~~i~~~~~V~~i~~~~~---~~~-V~---t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.++++  |++|++++.|+++..+++   ++. |.   ..+|  ..|.|+.||+|+|.++.
T Consensus       173 ~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          173 AEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             HHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            4556676  999999999999988765   543 32   2344  35899999999999874

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.76  E-value=0.11  Score=45.66  Aligned_cols=47  Identities=11%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+.++.++.  .|.+.+|.++.+|+||+|+|...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHhCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCCCc
Confidence            446788999999999999987654  46666776899999999999854

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.71  E-value=0.1  Score=44.73  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=43.1

Q ss_pred             hCCcEEEeCceeEEEEEcC-CeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           7 ELGGEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~-~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      ..+..|+.+++|++++..+ ++++|++.+|.+++||.||-|-|.+|. +-+.++.
T Consensus       121 ~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~-vR~~l~~  174 (412)
T 4hb9_A          121 GLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSK-VRKQYLP  174 (412)
T ss_dssp             TCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCH-HHHHHST
T ss_pred             hccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcc-hHHHhCC
Confidence            3467899999999998754 468899999988999999999999985 4455543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.66  E-value=0.081  Score=44.13  Aligned_cols=50  Identities=16%  Similarity=0.046  Sum_probs=37.5

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcCCeEE-EEeCC-----CcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENPESVT-ISTKQ-----GDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~-V~t~~-----g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+.+. |++++.+++|++++.+++++. |...+     +.++.||.||+|+|.-.+
T Consensus       216 ~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  272 (338)
T 3itj_A          216 KRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPA  272 (338)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEEC
T ss_pred             HHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCC
Confidence            345555 999999999999998776543 44322     347999999999998653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=93.52  E-value=0.032  Score=52.30  Aligned_cols=48  Identities=15%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE---eCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS---TKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~---t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.++++|++++++++|++|+.++  ..+.   ++++.++.||.||+|+|...+
T Consensus       575 ~~l~~~GV~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          575 RRLIENGVARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHHTTCEEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HHHHHCCCEEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            45778999999999999997543  4443   445557999999999998653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=93.49  E-value=0.085  Score=48.44  Aligned_cols=56  Identities=16%  Similarity=0.073  Sum_probs=39.5

Q ss_pred             HHhCCcEEEeCceeEEEEEcC----CeEE-EEe--CCC--cEEEc-CEEEEcCCCC-hHHHHHHcCC
Q psy3952           5 FCELGGEIRLNQQVESFKENP----ESVT-IST--KQG--DHLES-SYALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~----~~~~-V~t--~~g--~~i~A-~~VV~AaG~w-s~~l~~~~g~   60 (252)
                      +++.|++|++++.|++|..++    +++. |+.  .+|  .++.| +.||+|||+. +..|+...|+
T Consensus       241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI  307 (587)
T 1gpe_A          241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (587)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence            346699999999999998753    2332 432  345  35788 8999999984 6677666553

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.34  E-value=0.1  Score=46.59  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=39.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+.++.+++.+.|. ++++.++.+|+||+|+|.+.
T Consensus       100 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p  149 (490)
T 2bc0_A          100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQP  149 (490)
T ss_dssp             HHHHHTTCEEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred             HHHHhCCCEEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCc
Confidence            45677899999999999998877778776 33334699999999999754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.22  E-value=0.071  Score=47.22  Aligned_cols=48  Identities=25%  Similarity=0.405  Sum_probs=38.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++. + ++.|.+++|  .++.+|.||+|+|...+
T Consensus       220 ~~l~~~gv~i~~~~~v~~i~~-~-~v~v~~~~G~~~~i~~D~vv~a~G~~p~  269 (458)
T 1lvl_A          220 ESLKKLGIALHLGHSVEGYEN-G-CLLANDGKGGQLRLEADRVLVAVGRRPR  269 (458)
T ss_dssp             HHHHHHTCEEETTCEEEEEET-T-EEEEECSSSCCCEECCSCEEECCCEEEC
T ss_pred             HHHHHCCCEEEECCEEEEEEe-C-CEEEEECCCceEEEECCEEEECcCCCcC
Confidence            456788999999999999986 4 366665445  57999999999998764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=93.15  E-value=0.077  Score=49.44  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.2

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeCC------CcEEEcCEEEEcCCCCh
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTKQ------GDHLESSYALVCAGLQA   51 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~------g~~i~A~~VV~AaG~ws   51 (252)
                      .+.+|+.+++|++|+..+++|+|++.+      |.+++||+||+|..+..
T Consensus       409 ~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~v  458 (662)
T 2z3y_A          409 EGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV  458 (662)
T ss_dssp             TTCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHH
T ss_pred             hcCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHH
Confidence            477999999999999999899887654      44799999999988653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.13  E-value=0.16  Score=42.43  Aligned_cols=57  Identities=14%  Similarity=-0.021  Sum_probs=40.8

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeC---CC--cEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTK---QG--DHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g--~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      .+++.|++++.+++|++++.+++...|...   +|  .++.+|.||+|+|...+ .+++.+|+
T Consensus       200 ~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~  262 (335)
T 2zbw_A          200 AHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGL  262 (335)
T ss_dssp             HHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCC
T ss_pred             ccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcce
Confidence            355669999999999999885442234332   45  47999999999998765 35555553

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.09  E-value=0.12  Score=46.13  Aligned_cols=49  Identities=12%  Similarity=0.018  Sum_probs=37.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCC-----cEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQG-----DHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g-----~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++++..++ .+.|.+.++     .++.+|.||+|+|.-.
T Consensus       235 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          235 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence            456788999999999999998654 455654333     2699999999999754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.04  E-value=0.14  Score=45.80  Aligned_cols=48  Identities=15%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++++++|++++. ++++ .|.++ |.++.||.||+|+|.-.+
T Consensus       244 ~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~~-g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          244 KNMEEHGIQLAFGETVKEVAG-NGKVEKIITD-KNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHTTTCEEEETCCEEEEEC-SSSCCEEEES-SCEEECSEEEECCCEEEC
T ss_pred             HHHHhCCeEEEeCCEEEEEEc-CCcEEEEEEC-CcEEECCEEEECCCCCcC
Confidence            456788999999999999986 3444 36664 448999999999998654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=92.96  E-value=0.15  Score=43.61  Aligned_cols=51  Identities=8%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             hhHHHh-CCcEEEeCceeEEEEEcC-----------------C--eEE-EEe------CC--------CcEEEcCEEEEc
Q psy3952           2 GEEFCE-LGGEIRLNQQVESFKENP-----------------E--SVT-IST------KQ--------GDHLESSYALVC   46 (252)
Q Consensus         2 ~~~a~~-~G~~i~~~~~V~~i~~~~-----------------~--~~~-V~t------~~--------g~~i~A~~VV~A   46 (252)
                      .+.+++ .|++++++++|+++..++                 +  ++. |.+      ..        ..+|+|++||+|
T Consensus       167 ~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~A  246 (344)
T 3jsk_A          167 LSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIIST  246 (344)
T ss_dssp             HHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEEC
T ss_pred             HHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEEC
Confidence            345666 599999999999998755                 2  332 322      12        236999999999


Q ss_pred             CCCChH
Q psy3952          47 AGLQAD   52 (252)
Q Consensus        47 aG~ws~   52 (252)
                      +|..+.
T Consensus       247 TG~~s~  252 (344)
T 3jsk_A          247 TGHDGP  252 (344)
T ss_dssp             CCSSSS
T ss_pred             CCCCch
Confidence            999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.89  E-value=0.12  Score=43.01  Aligned_cols=58  Identities=10%  Similarity=-0.012  Sum_probs=41.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC-----CcEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQ-----GDHLESSYALVCAGLQA-DEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-----g~~i~A~~VV~AaG~ws-~~l~~~~g~   60 (252)
                      +.+++.|++++.+++|++++.+++...|...+     +.++.+|.||+|+|.-. ..+++.+|+
T Consensus       197 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~  260 (332)
T 3lzw_A          197 ENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGL  260 (332)
T ss_dssp             HHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSC
T ss_pred             HHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCc
Confidence            45678999999999999998766543443322     34699999999999765 244444443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=92.83  E-value=0.16  Score=45.12  Aligned_cols=50  Identities=22%  Similarity=0.168  Sum_probs=39.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe--EEEEeCC-------CcEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES--VTISTKQ-------GDHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~~-------g~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++..+++  +.|.+.+       |.++.+|.||+|+|...+
T Consensus       236 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~  294 (478)
T 3dk9_A          236 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN  294 (478)
T ss_dssp             HHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence            4567889999999999999886554  5666653       247999999999997654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=92.83  E-value=0.21  Score=43.83  Aligned_cols=48  Identities=15%  Similarity=0.249  Sum_probs=38.3

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++++. .+|++++.++.  .|++++|.++.+|+||+|+|....
T Consensus        66 ~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           66 RHYVERKGIHFIA-QSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKLA  113 (437)
T ss_dssp             HHHHHTTTCEEEC-SCEEEEETTTT--EEEETTSCEEECSEEEECCCCEEC
T ss_pred             HHHHHHCCCEEEE-eEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCcC
Confidence            3456778999985 69999987665  567777767999999999998654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=92.77  E-value=0.15  Score=44.66  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=36.0

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      .+++.|++++.+ +|++|+.++..  |++++|.++..|++|+|+|..
T Consensus        65 ~~~~~gv~~i~~-~v~~Id~~~~~--V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           65 LLPKFNIEFINE-KAESIDPDANT--VTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             TGGGGTEEEECS-CEEEEETTTTE--EEETTCCEEECSEEEECCCCE
T ss_pred             HHHHCCcEEEEe-EEEEEECCCCE--EEECCCCEEECCEEEEeCCCC
Confidence            356779999875 79999877664  677888789999999999974

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=92.70  E-value=0.23  Score=43.67  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=39.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEe-CCCc--EEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~--~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+.++.+++.+.+.+ .+|.  ++.+|++|+|+|...
T Consensus        64 ~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p  115 (447)
T 1nhp_A           64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (447)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence            346678999999999999988777777765 3452  389999999999754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.66  E-value=0.14  Score=43.39  Aligned_cols=49  Identities=16%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             HHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEE-cCEEEEcCCCChHH
Q psy3952           5 FCELG-GEIRLNQQVESFKENPESVTISTKQGDHLE-SSYALVCAGLQADE   53 (252)
Q Consensus         5 a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~-A~~VV~AaG~ws~~   53 (252)
                      .++.| ++++.+++|++++.+++.+.|++.+|..+. +|.||.|+|.-.+.
T Consensus       224 l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          224 IKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             HHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred             HhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCcc
Confidence            35566 999999999999877777778887785565 59999999987654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.63  E-value=0.2  Score=41.22  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=37.4

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeE---EEEeCCCc--EEEcCEEEEcCCCChH
Q psy3952           5 FCELGGEIRLNQQVESFKENPESV---TISTKQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .++.|++++.+++|++++.+++++   .+.+.+|.  ++.+|.||+|+|.-.+
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~  245 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVR  245 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEEC
T ss_pred             HhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCC
Confidence            357899999999999998877553   34444664  6999999999997543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.62  E-value=0.069  Score=45.88  Aligned_cols=53  Identities=23%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +.+++.|++++++++|++++  .+  .|++.+| ++.+|.||+|+|...+ .+++.+|+
T Consensus       191 ~~l~~~gV~i~~~~~v~~i~--~~--~v~~~~g-~i~~D~vi~a~G~~p~~~ll~~~gl  244 (367)
T 1xhc_A          191 DMLEETGVKFFLNSELLEAN--EE--GVLTNSG-FIEGKVKICAIGIVPNVDLARRSGI  244 (367)
T ss_dssp             HHHHHTTEEEECSCCEEEEC--SS--EEEETTE-EEECSCEEEECCEEECCHHHHHTTC
T ss_pred             HHHHHCCCEEEcCCEEEEEE--ee--EEEECCC-EEEcCEEEECcCCCcCHHHHHhCCC
Confidence            45778899999999999997  22  3667788 4999999999998865 37777775

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=92.62  E-value=0.17  Score=44.61  Aligned_cols=49  Identities=12%  Similarity=0.192  Sum_probs=39.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++++.+++.|.+. +.++.++.+|++|+|+|...
T Consensus        66 ~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A           66 EELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQ  115 (452)
T ss_dssp             HHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCB
T ss_pred             HHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCccc
Confidence            45678899999999999999888888775 23444799999999999853

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=92.55  E-value=0.16  Score=42.19  Aligned_cols=57  Identities=19%  Similarity=0.265  Sum_probs=40.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe---EEEEe-CCCc--EEEcCEEEEcCCCChH-HHHHHcC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES---VTIST-KQGD--HLESSYALVCAGLQAD-EMALKSG   59 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~---~~V~t-~~g~--~i~A~~VV~AaG~ws~-~l~~~~g   59 (252)
                      +.+++.|++++.+++|+++..++++   +.+.. .+|.  ++.||.||+|+|.-.+ .+++.+|
T Consensus       198 ~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g  261 (319)
T 3cty_A          198 QEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSG  261 (319)
T ss_dssp             HHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSC
T ss_pred             HHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcc
Confidence            4567889999999999999887653   33332 2453  5999999999997654 3443333

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=92.48  E-value=0.31  Score=45.44  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=43.9

Q ss_pred             hhHHHhCC---cEEEeCceeEEEEEcC--------CeEEEE--e------------------------------------
Q psy3952           2 GEEFCELG---GEIRLNQQVESFKENP--------ESVTIS--T------------------------------------   32 (252)
Q Consensus         2 ~~~a~~~G---~~i~~~~~V~~i~~~~--------~~~~V~--t------------------------------------   32 (252)
                      .+.+++.|   +++..+++|++++.++        .+++|+  +                                    
T Consensus       126 ~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~  205 (665)
T 1pn0_A          126 LDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRL  205 (665)
T ss_dssp             HHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCC
T ss_pred             HHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccccccccc
Confidence            35566666   8999999999998864        356553  2                                    


Q ss_pred             ----CCC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952          33 ----KQG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus        33 ----~~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                          .+|  .+++|++||-|-|++|. +.+++|+
T Consensus       206 ~~~~~~G~~~~i~A~~VVGADG~~S~-VR~~lg~  238 (665)
T 1pn0_A          206 PEGKEAGEIETVHCKYVIGCDGGHSW-VRRTLGF  238 (665)
T ss_dssp             STTCCTTCEEEEEEEEEEECCCTTCH-HHHHHTC
T ss_pred             cccCCCCceEEEEeCEEEeccCCCCH-HHHhcCC
Confidence                234  46999999999999985 6677786

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=92.47  E-value=0.2  Score=41.46  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=33.0

Q ss_pred             HHhCCcEEEeCceeEEEEEc-CCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           5 FCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~-~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +.+.+...+....+..+... .+.++|.+.+|.++.+|+||+|+|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~  116 (304)
T 4fk1_A           70 VMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQ  116 (304)
T ss_dssp             HTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCE
T ss_pred             HHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCc
Confidence            44555444445566666654 45578888888789999999999974

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.11  E-value=0.29  Score=42.48  Aligned_cols=45  Identities=18%  Similarity=0.264  Sum_probs=37.6

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      ..++.|++++.+++|+.++....  .|.+.+|.++.+|++|+|+|..
T Consensus        66 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           66 WYGEARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             HHHHTTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence            45678999999999999986654  5677777689999999999975

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=92.10  E-value=0.26  Score=43.41  Aligned_cols=49  Identities=14%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC---CCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|+.++.+++.+.+.+.   ++.++.+|++|+|+|...
T Consensus        66 ~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A           66 EELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             HHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence            4467789999999999999877777777652   234799999999999754

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.03  E-value=0.065  Score=47.73  Aligned_cols=53  Identities=9%  Similarity=0.112  Sum_probs=40.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS   58 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~   58 (252)
                      ++.+.+.|++|+.+++|++|..+++.  |.+.+|.++.||+||.+.-+  +.+.+++
T Consensus       229 ~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~--~~l~~~l  281 (513)
T 4gde_A          229 ANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAV--DFLAEAM  281 (513)
T ss_dssp             HHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCH--HHHHHHT
T ss_pred             HHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCH--HHHHHhc
Confidence            34456779999999999999987765  45667778999999988654  3455544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.00  E-value=0.19  Score=44.16  Aligned_cols=56  Identities=16%  Similarity=0.339  Sum_probs=42.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +..++. ++++.+++|++++.++....|.++.+ ++.||.||+|+|...+ .+++.+|+
T Consensus       198 ~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~-~i~~D~Vv~a~G~~p~~~l~~~~gl  254 (449)
T 3kd9_A          198 EKLKKH-VNLRLQEITMKIEGEERVEKVVTDAG-EYKAELVILATGIKPNIELAKQLGV  254 (449)
T ss_dssp             HHHTTT-SEEEESCCEEEEECSSSCCEEEETTE-EEECSEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCC-EEECCEEEEeeCCccCHHHHHhCCc
Confidence            345566 99999999999986653223556555 8999999999999854 56777775

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=91.99  E-value=0.24  Score=42.03  Aligned_cols=49  Identities=18%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             hHHHhC-CcEEEeCceeEEEEEcC----C--eEE-EEeC--------------CCcEEEc---------------CEEEE
Q psy3952           3 EEFCEL-GGEIRLNQQVESFKENP----E--SVT-ISTK--------------QGDHLES---------------SYALV   45 (252)
Q Consensus         3 ~~a~~~-G~~i~~~~~V~~i~~~~----~--~~~-V~t~--------------~g~~i~A---------------~~VV~   45 (252)
                      +.+.+. |++++++++|+++..++    +  ++. |.+.              ++.++.|               +.||+
T Consensus       154 ~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~  233 (326)
T 2gjc_A          154 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILS  233 (326)
T ss_dssp             HHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEE
T ss_pred             HHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEE
Confidence            456664 99999999999998763    3  432 4321              2246889               99999


Q ss_pred             cCCCCh
Q psy3952          46 CAGLQA   51 (252)
Q Consensus        46 AaG~ws   51 (252)
                      |+|..+
T Consensus       234 ATG~~~  239 (326)
T 2gjc_A          234 TTGHDG  239 (326)
T ss_dssp             CCCCC-
T ss_pred             CcCCCc
Confidence            999765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=91.98  E-value=0.16  Score=41.46  Aligned_cols=54  Identities=11%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws-~~l~~~~g~   60 (252)
                      +.+++.|++++. ++|++++.++   .|.+.+|.++.+|.||+|+|... ..+++.+|+
T Consensus       182 ~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~  236 (297)
T 3fbs_A          182 ALLAARGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRITVDWIEKLGC  236 (297)
T ss_dssp             HHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECCCSCHHHHTC
T ss_pred             HHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccCchhHHhcCC
Confidence            456788999996 8999987543   67777787899999999999863 245555664

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=91.97  E-value=0.35  Score=43.01  Aligned_cols=46  Identities=15%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEe-CCCc--EEEcCEEEEcCCCCh
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~--~i~A~~VV~AaG~ws   51 (252)
                      ++.|++++.+++|+.++.+++.+.+.+ .+|.  ++.+|+||+|+|...
T Consensus       104 ~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p  152 (480)
T 3cgb_A          104 DKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRP  152 (480)
T ss_dssp             HTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             hhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcc
Confidence            345999999999999988777787776 4564  699999999999754

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.83  E-value=0.11  Score=46.24  Aligned_cols=47  Identities=19%  Similarity=0.178  Sum_probs=36.6

Q ss_pred             HHhCC-cEEEeCceeEEEEEcCCe------EEEEe--CCC---cEEEcCEEEEcCCCCh
Q psy3952           5 FCELG-GEIRLNQQVESFKENPES------VTIST--KQG---DHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G-~~i~~~~~V~~i~~~~~~------~~V~t--~~g---~~i~A~~VV~AaG~ws   51 (252)
                      +++.| ++|+++++|++|+.++++      |.|++  .+|   .++.||+||+|+.++.
T Consensus       250 ~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~  308 (504)
T 1sez_A          250 CKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCD  308 (504)
T ss_dssp             HTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHH
T ss_pred             HhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHH
Confidence            34456 789999999999987766      77654  345   4789999999998864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=91.78  E-value=0.18  Score=43.82  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=36.9

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++++.+++|+.++.++  ++|.+.+|.++.+|++|+|+|...
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHCCCEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCCC
Confidence            456799999999999998654  456677776899999999999854

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=91.36  E-value=0.19  Score=48.20  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=36.6

Q ss_pred             CCcEEEeCceeEEEEEcCCeEEEEeCC------CcEEEcCEEEEcCCCCh
Q psy3952           8 LGGEIRLNQQVESFKENPESVTISTKQ------GDHLESSYALVCAGLQA   51 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~------g~~i~A~~VV~AaG~ws   51 (252)
                      .+..|+++++|++|...+++|+|++.+      |.++.||+||+|.-++.
T Consensus       580 ~~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~v  629 (852)
T 2xag_A          580 EGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV  629 (852)
T ss_dssp             TTCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHH
T ss_pred             hCCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHH
Confidence            367899999999999999999887643      44799999999987653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=91.35  E-value=0.28  Score=43.81  Aligned_cols=48  Identities=23%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChH
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~   52 (252)
                      ..++. ++++.+++|++++.+++++.|...  +|  .++.+|.||+|+|...+
T Consensus       224 ~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          224 TFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             HHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence            34455 999999999999988877776653  45  57999999999998653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=91.31  E-value=0.22  Score=44.80  Aligned_cols=53  Identities=11%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC----cEEEcCEEEEcCCCChHHHH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQADEMA   55 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g----~~i~A~~VV~AaG~ws~~l~   55 (252)
                      +..+++|++++++++|++++.++-...+.+.+|    .+|.||.||.|+|.-.+.+.
T Consensus       280 ~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~  336 (502)
T 4g6h_A          280 SHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVI  336 (502)
T ss_dssp             HHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHH
T ss_pred             HHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHH
Confidence            456789999999999999864322233445555    25999999999997665443

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=90.87  E-value=0.47  Score=39.40  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=35.3

Q ss_pred             HHHh-CCcEEEeCceeEEEEEcCCeEEEEe---CCCc--EEEcCEEEEcCCCChH
Q psy3952           4 EFCE-LGGEIRLNQQVESFKENPESVTIST---KQGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~--~i~A~~VV~AaG~ws~   52 (252)
                      .+.+ .|++++.+++|+++..++....|..   .+|.  ++.+|.||+|+|.-.+
T Consensus       196 ~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          196 RAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPN  250 (325)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             HHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCC
Confidence            3443 5999999999999987643223432   2453  6999999999997654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=90.79  E-value=0.19  Score=44.61  Aligned_cols=45  Identities=11%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cE------EEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DH------LESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~------i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++.+..   +.+.+.|.+.+|  .+      +.+|+||+|+|.+.
T Consensus       105 ~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A          105 LFKKNKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHTTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHhCCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence            45678999999987752   556688887666  46      99999999999876

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.72  E-value=0.39  Score=41.12  Aligned_cols=45  Identities=16%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +.+++.|++++.+++|+.++...  +.|.+ +|.++.+|++|+|+|..
T Consensus        68 ~~~~~~~v~~~~g~~v~~id~~~--~~V~~-~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           68 DWYRKRGIEIRLAEEAKLIDRGR--KVVIT-EKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             HHHHHHTEEEECSCCEEEEETTT--TEEEE-SSCEEECSEEEECCCEE
T ss_pred             HHHHhCCcEEEECCEEEEEECCC--CEEEE-CCcEEECCEEEECCCCC
Confidence            34567899999999999998654  34553 44489999999999964

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.65  E-value=0.21  Score=41.08  Aligned_cols=45  Identities=22%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcC--CeEEE-EeCCCcEEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENP--ESVTI-STKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~--~~~~V-~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +.+++.|++++++ +|+++ .++  +.|.| .+.++ ++.+|+||+|+|..
T Consensus        70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEE
T ss_pred             HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCC
Confidence            4566789999887 89999 766  67884 33344 89999999999974

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=90.54  E-value=0.2  Score=45.77  Aligned_cols=55  Identities=16%  Similarity=0.192  Sum_probs=38.4

Q ss_pred             HhCCcEEEeCceeEEEEEc----C-Ce---EEEEeCCC---cEEEc-CEEEEcCCCC-hHHHHHHcCC
Q psy3952           6 CELGGEIRLNQQVESFKEN----P-ES---VTISTKQG---DHLES-SYALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~----~-~~---~~V~t~~g---~~i~A-~~VV~AaG~w-s~~l~~~~g~   60 (252)
                      ++.+.+|++++.|++|..+    + ++   |.+...+|   .++.| +-||+|||+. +.+|+...|+
T Consensus       219 ~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGI  286 (566)
T 3fim_B          219 SRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGI  286 (566)
T ss_dssp             TCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             cCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCC
Confidence            4569999999999999876    3 22   33444333   35888 6799999876 5666665443

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=90.48  E-value=0.33  Score=43.90  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=37.5

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEe-CCC--cEEEcCEEEEcCCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIST-KQG--DHLESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g--~~i~A~~VV~AaG~w   50 (252)
                      +++.|++++.+++|++++.+++.+.+.+ .+|  .++.+|+||+|+|..
T Consensus        68 ~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           68 KARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             HHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence            3457999999999999998888888765 223  369999999999984

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=90.41  E-value=0.41  Score=39.39  Aligned_cols=48  Identities=23%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             HHHh-CCcEEEeCceeEEEEEcCCeE-EEEe---CCC--cEEEcCEEEEcCCCCh
Q psy3952           4 EFCE-LGGEIRLNQQVESFKENPESV-TIST---KQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~-~G~~i~~~~~V~~i~~~~~~~-~V~t---~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+++ .|++++.+++|+++..+++++ .|..   .+|  .++.+|.||+|+|.-.
T Consensus       188 ~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  242 (310)
T 1fl2_A          188 KLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLP  242 (310)
T ss_dssp             HHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred             HHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCcc
Confidence            4555 699999999999998776554 3432   234  3689999999999754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=90.36  E-value=0.42  Score=41.30  Aligned_cols=48  Identities=23%  Similarity=0.293  Sum_probs=35.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+ +|++++.++..+.+...++  .++.+|+||+|+|...
T Consensus        64 ~~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           64 EALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             HHTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEE
T ss_pred             HHHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCc
Confidence            3456789999987 9999987766555444332  2399999999999854

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=90.34  E-value=0.23  Score=45.49  Aligned_cols=53  Identities=15%  Similarity=0.168  Sum_probs=37.1

Q ss_pred             hCCcEEEeCceeEEEEEc--CCeE---EEEeCCC--cEEEc-CEEEEcCCCC-hHHHHHHcC
Q psy3952           7 ELGGEIRLNQQVESFKEN--PESV---TISTKQG--DHLES-SYALVCAGLQ-ADEMALKSG   59 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~--~~~~---~V~t~~g--~~i~A-~~VV~AaG~w-s~~l~~~~g   59 (252)
                      +.+.+|++++.|++|..+  ++++   .+...+|  .++.| +-||+|||+. +.+|+...|
T Consensus       218 r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SG  279 (577)
T 3q9t_A          218 KPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSG  279 (577)
T ss_dssp             CTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTT
T ss_pred             CCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcC
Confidence            468999999999999887  5543   3444435  35778 4699999886 455554443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=90.32  E-value=0.5  Score=38.86  Aligned_cols=46  Identities=20%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             hCCcEEEeCceeEEEEEcCCeE-EEEeC---CCc--EEEcCEEEEcCCCChH
Q psy3952           7 ELGGEIRLNQQVESFKENPESV-TISTK---QGD--HLESSYALVCAGLQAD   52 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~-~V~t~---~g~--~i~A~~VV~AaG~ws~   52 (252)
                      +.|++++.+++|++++.+++++ .|...   +|.  ++.+|.||+|+|.-.+
T Consensus       191 ~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  242 (311)
T 2q0l_A          191 NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVN  242 (311)
T ss_dssp             CTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEEC
T ss_pred             CCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccC
Confidence            4699999999999998775553 34332   553  6999999999997643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=90.29  E-value=0.29  Score=44.40  Aligned_cols=48  Identities=15%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             hhHHHhCCcEEEe--CceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           2 GEEFCELGGEIRL--NQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         2 ~~~a~~~G~~i~~--~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      .++..+.+++++.  .++|++|..++    |.|.+|.++++|.||+|+|.-+..
T Consensus       337 ~~~l~~~nV~lv~~~~~~I~~it~~g----v~~~dG~~~~~DvIV~ATGf~~~~  386 (540)
T 3gwf_A          337 YEVYNRPNVEAVAIKENPIREVTAKG----VVTEDGVLHELDVLVFATGFDAVD  386 (540)
T ss_dssp             GGGGGSTTEEEEETTTSCEEEECSSE----EEETTCCEEECSEEEECCCBSCSS
T ss_pred             HHHhcCCCEEEEeCCCCCccEEecCe----EEcCCCCEEECCEEEECCccCccc
Confidence            4556677999985  67888886432    778889679999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=90.12  E-value=0.43  Score=42.44  Aligned_cols=49  Identities=14%  Similarity=0.121  Sum_probs=36.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcC-CeEEEEeC---CCc--EEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENP-ESVTISTK---QGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~V~t~---~g~--~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++++..+ +.+.|...   +|.  ++.+|.||+|+|.-.
T Consensus       233 ~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          233 EHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             HHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence            45678899999999999998744 44555432   252  379999999999754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=90.08  E-value=0.22  Score=44.64  Aligned_cols=46  Identities=7%  Similarity=0.081  Sum_probs=35.6

Q ss_pred             HHHhCCcEEEeCceeEEEEEcC--------CeEEEEeCCC-----cEEEcCEEEEcCCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENP--------ESVTISTKQG-----DHLESSYALVCAGL   49 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~--------~~~~V~t~~g-----~~i~A~~VV~AaG~   49 (252)
                      .|++.+..|+++++|++++...        +.|+|++.++     .++.|+.||+|+|.
T Consensus       154 ~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          154 CAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            4666777899999999998643        2488876432     36999999999995

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=89.92  E-value=0.25  Score=44.86  Aligned_cols=44  Identities=11%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             hHHHhCCcEEEe--CceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRL--NQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~--~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      ++..+.+++++.  .++|++|..++    |.|.+| ++++|.||+|+|.-+
T Consensus       346 ~al~~~nV~lv~~~~~~I~~it~~g----v~~~dG-~~~~D~IV~ATGf~~  391 (545)
T 3uox_A          346 ETYNRDNVHLVDIREAPIQEVTPEG----IKTADA-AYDLDVIIYATGFDA  391 (545)
T ss_dssp             HHTTSTTEEEEETTTSCEEEEETTE----EEESSC-EEECSEEEECCCCBS
T ss_pred             HHhcCCCEEEEecCCCCceEEccCe----EEeCCC-eeecCEEEECCcccc
Confidence            455677999986  78899886432    788999 999999999999975

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=89.85  E-value=0.53  Score=40.83  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=37.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +..++.|++++.+++|+.++..+.  .|.+.+|..+.+|++|+|+|..
T Consensus        73 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  118 (415)
T 3lxd_A           73 QFWEDKAVEMKLGAEVVSLDPAAH--TVKLGDGSAIEYGKLIWATGGD  118 (415)
T ss_dssp             HHHHHTTEEEEETCCEEEEETTTT--EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHCCcEEEeCCEEEEEECCCC--EEEECCCCEEEeeEEEEccCCc
Confidence            345678999999999999986654  4667777689999999999964

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=89.64  E-value=0.57  Score=42.69  Aligned_cols=46  Identities=13%  Similarity=0.238  Sum_probs=38.3

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEe-CCCc--EEEcCEEEEcCCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~--~i~A~~VV~AaG~w   50 (252)
                      +++.|++++.+++|++++.+++.+.+.+ .+|.  .+.+|+||+|+|..
T Consensus       103 ~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~  151 (588)
T 3ics_A          103 SKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAK  151 (588)
T ss_dssp             HHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCC
Confidence            4578999999999999998888888765 3453  68999999999974

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.59  E-value=0.32  Score=42.91  Aligned_cols=45  Identities=11%  Similarity=0.145  Sum_probs=35.4

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++.+. +  +.+.+.|.+.+|  .++.+|+||+|+|...
T Consensus       105 ~~~~~gv~~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p  151 (470)
T 1dxl_A          105 LFKKNKVTYVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATGSDV  151 (470)
T ss_dssp             HHHHHTCEEEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCCEEE
T ss_pred             HHHhCCCEEEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCCCCC
Confidence            3567799999998664 3  456788887766  5799999999999865

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.58  E-value=0.47  Score=41.73  Aligned_cols=45  Identities=11%  Similarity=0.089  Sum_probs=35.4

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++.+. +  +.+.+.|.+.+| .++.+|+||+|+|...
T Consensus       100 ~~~~~gv~~~~g~~~~-i--d~~~v~V~~~~G~~~i~~d~lViATGs~p  145 (455)
T 1ebd_A          100 LLKGNKVEIVKGEAYF-V--DANTVRVVNGDSAQTYTFKNAIIATGSRP  145 (455)
T ss_dssp             HHHTTTCEEEESEEEE-E--ETTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred             HHHhCCCEEEEEEEEE-c--cCCeEEEEeCCCcEEEEeCEEEEecCCCC
Confidence            4567899999988654 3  456788888776 5799999999999864

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=89.53  E-value=0.37  Score=42.98  Aligned_cols=44  Identities=14%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             HhCCc-EEEeC--ceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           6 CELGG-EIRLN--QQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         6 ~~~G~-~i~~~--~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +..+. +|+.+  ++|++|+.++++|+  +.+|.++.||+||+|+.++.
T Consensus       224 ~~l~~~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~~~  270 (484)
T 4dsg_A          224 EKLPSEKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPFDN  270 (484)
T ss_dssp             HHSCGGGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCHHH
T ss_pred             hhhhhCeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCHHH
Confidence            33443 78888  56999998888764  45665899999999997764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=89.40  E-value=0.31  Score=43.57  Aligned_cols=43  Identities=12%  Similarity=0.211  Sum_probs=35.9

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.|++++.+++|++|+.++.  +|.+.+|.++.+|++|+|+|...
T Consensus       102 ~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p  144 (493)
T 1m6i_A          102 NGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTP  144 (493)
T ss_dssp             TCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEE
T ss_pred             cCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCC
Confidence            56999999999999987654  56677776899999999999754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=89.39  E-value=0.37  Score=43.15  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=39.9

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEE---EEeCCC-cEEEcCEEEEcCCCC-hHHHHHHcC
Q psy3952           7 ELGGEIRLNQQVESFKENPESVT---ISTKQG-DHLESSYALVCAGLQ-ADEMALKSG   59 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~---V~t~~g-~~i~A~~VV~AaG~w-s~~l~~~~g   59 (252)
                      +.+.++++++.|+++..++++.+   +...++ ..+.|+.||+|||+. +..|+...|
T Consensus       223 r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SG  280 (526)
T 3t37_A          223 RKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSG  280 (526)
T ss_dssp             CTTEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTT
T ss_pred             CCCeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhcc
Confidence            45889999999999998887643   334443 458899999999986 666766544

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=89.14  E-value=0.15  Score=44.69  Aligned_cols=55  Identities=18%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      ..+++|++++++++|++++  ++++.+++.+|  .++.||.||.|+|.-.+.+....+.
T Consensus       209 ~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~  265 (430)
T 3hyw_A          209 LFAERNIDWIANVAVKAIE--PDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGD  265 (430)
T ss_dssp             HHHHTTCEEECSCEEEEEC--SSEEEEECTTSCEEEEECSEEEEECEEECCHHHHTTCT
T ss_pred             HHHhCCeEEEeCceEEEEe--CCceEEEeeCCCceEeecceEEEeccCCCchHHHhccc
Confidence            3567899999999999985  45566665443  4799999999999887777666653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=89.12  E-value=0.73  Score=40.39  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=35.5

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCC
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQ   50 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~w   50 (252)
                      ++.|++++.+++|++++.  +.+.|.+++| .++.+|+||+|+|..
T Consensus        70 ~~~gi~v~~~~~v~~i~~--~~~~v~~~~g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           70 KKRGIDLHLNAEVIEVDT--GYVRVRENGGEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             HHTTCEEETTCEEEEECS--SEEEEECSSSEEEEECSEEEECCCEE
T ss_pred             HhcCcEEEecCEEEEEec--CCCEEEECCceEEEEcCEEEECCCCC
Confidence            678999999999999854  3467777776 379999999999964

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=89.06  E-value=0.31  Score=43.01  Aligned_cols=45  Identities=7%  Similarity=0.051  Sum_probs=35.6

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++.+.   .+.+.+.|.+.+|  .++.+|+||+|+|..+
T Consensus       100 ~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~  146 (464)
T 2a8x_A          100 LMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSST  146 (464)
T ss_dssp             HHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEE
T ss_pred             HHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCC
Confidence            4567899999887654   3556688888777  5799999999999865

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=88.95  E-value=0.25  Score=43.95  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=34.6

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC------------cEEEcCEEEEcCCCChH
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG------------DHLESSYALVCAGLQAD   52 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g------------~~i~A~~VV~AaG~ws~   52 (252)
                      .++++|++++.++.+.   .+++.+.|.+.+|            .++.+|+||+|+|.+..
T Consensus       104 ~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A          104 MAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence            4567899999988654   3455677765444            47999999999999853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=88.75  E-value=0.75  Score=38.17  Aligned_cols=48  Identities=15%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             HHhCCcEEEeCceeEEEEEcCC--e---EEEEe-CCC--cEEEcCEEEEcCCCChH
Q psy3952           5 FCELGGEIRLNQQVESFKENPE--S---VTIST-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~--~---~~V~t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .++.|++++.+++|++++.+++  +   +.+.+ .+|  .++.+|.||+|+|.-.+
T Consensus       205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPA  260 (333)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred             HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccc
Confidence            3568999999999999988764  3   33332 133  47999999999998654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=88.54  E-value=0.57  Score=41.38  Aligned_cols=44  Identities=14%  Similarity=0.266  Sum_probs=34.3

Q ss_pred             hCCcEEEeCceeEEEEEcCCeEEEEe-CCCc--EEEcCEEEEcCCCC
Q psy3952           7 ELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQ   50 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~--~i~A~~VV~AaG~w   50 (252)
                      +.|++++.+++|++++.+++.+.+.+ .+|.  .+.+|++|+|+|..
T Consensus        78 ~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  124 (472)
T 3iwa_A           78 NKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSK  124 (472)
T ss_dssp             ---CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             hcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCC
Confidence            57999999999999998888888775 2343  69999999999974

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=88.29  E-value=0.89  Score=39.23  Aligned_cols=45  Identities=13%  Similarity=0.187  Sum_probs=36.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +..++.|++++. ++|+.++.++.  .|.+.+|.++.+|++|+|+|..
T Consensus        65 ~~~~~~~i~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           65 KFFQDQAIELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             HHHHHTTEEEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCEE
T ss_pred             HHHHhCCCEEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCCC
Confidence            345678999999 99999987665  4666777689999999999963

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=88.12  E-value=0.52  Score=42.82  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=36.3

Q ss_pred             hhHHHhCCcEEE--eCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIR--LNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~--~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .++..+.+++++  ..++|++|..++    |.|.+| ++.+|.||+|+|.-+.
T Consensus       350 ~~al~~~~V~lvd~~~~~I~~it~~g----v~~~dG-~~~~D~iI~ATGf~~~  397 (549)
T 4ap3_A          350 YETYNRDNVELVDLRSTPIVGMDETG----IVTTGA-HYDLDMIVLATGFDAM  397 (549)
T ss_dssp             GGGGGSTTEEEEETTTSCEEEEETTE----EEESSC-EEECSEEEECCCEEES
T ss_pred             HHHhcCCCEEEEeCCCCCceEEeCCc----EEeCCC-ceecCEEEECCccccc
Confidence            455667789987  247888887432    778899 9999999999999765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=87.76  E-value=0.73  Score=42.84  Aligned_cols=47  Identities=13%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++++  ++++.++ .+|  .++.||.||+|+|.-.+
T Consensus       581 ~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          581 TTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCcccc
Confidence            34678899999999999987  3456554 344  47999999999998653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=87.60  E-value=0.63  Score=42.97  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=38.2

Q ss_pred             hCCcEEEeCceeEEEEEcCC--e---EEEEe-CCC--cEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952           7 ELGGEIRLNQQVESFKENPE--S---VTIST-KQG--DHLESSYALVCAGLQA-DEMALKSGC   60 (252)
Q Consensus         7 ~~G~~i~~~~~V~~i~~~~~--~---~~V~t-~~g--~~i~A~~VV~AaG~ws-~~l~~~~g~   60 (252)
                      +.|++|++++.|++|..+++  +   +.+.. .+|  .++.|+.||+|+|... ..++...|+
T Consensus       272 ~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgi  334 (623)
T 3pl8_A          272 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGF  334 (623)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTS
T ss_pred             CCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCC
Confidence            45899999999999988643  3   23332 234  3688999999999864 456555544

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.33  E-value=0.63  Score=40.85  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~   60 (252)
                      +..++.|++++.+++|++++  ++  .|.+.+|.++.+|.|++|+|.-.+ .+++..|+
T Consensus       196 ~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl  250 (437)
T 4eqs_A          196 DELDKREIPYRLNEEINAIN--GN--EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNI  250 (437)
T ss_dssp             HHHHHTTCCEEESCCEEEEE--TT--EEEETTSCEEECSEEEECCCEEESCGGGTTSSC
T ss_pred             HHhhccceEEEeccEEEEec--CC--eeeecCCeEEeeeeEEEEeceecCcHHHHhhhh
Confidence            45678899999999999875  23  356667778999999999997643 34444554

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=86.82  E-value=0.74  Score=39.43  Aligned_cols=44  Identities=11%  Similarity=0.114  Sum_probs=35.8

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++++.+++|+.+...+.  +|.++++ ++.+|++|+|+|...
T Consensus        70 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~-~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           70 AEQLNARILTHTRVTGIDPGHQ--RIWIGEE-EVRYRDLVLAWGAEP  113 (384)
T ss_dssp             HHHTTCEEECSCCCCEEEGGGT--EEEETTE-EEECSEEEECCCEEE
T ss_pred             HHhCCcEEEeCCEEEEEECCCC--EEEECCc-EEECCEEEEeCCCCc
Confidence            4678999999999999986544  4566666 899999999999754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=86.65  E-value=0.97  Score=37.06  Aligned_cols=48  Identities=13%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.+.++... .|.......+.+.+.+.++.++.+++||+|+|...
T Consensus        74 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           74 TQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             HHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEE
T ss_pred             HHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccc
Confidence            3466788888754 57766666666667777776899999999999743

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=86.44  E-value=1.2  Score=38.13  Aligned_cols=46  Identities=11%  Similarity=0.225  Sum_probs=36.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +.+.+.|+++++. +|++|+.+..  .|.+.+|.++..|++|+|+|...
T Consensus        63 ~~~~~~gv~~i~~-~v~~id~~~~--~v~~~~g~~i~yd~LviAtG~~~  108 (401)
T 3vrd_B           63 DGLRAHGIQVVHD-SALGIDPDKK--LVKTAGGAEFAYDRCVVAPGIDL  108 (401)
T ss_dssp             HHHHHTTCEEECS-CEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHHCCCEEEEe-EEEEEEccCc--EEEecccceeecceeeeccCCcc
Confidence            3456789999865 7999987665  35677777899999999999854

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=85.98  E-value=0.82  Score=38.13  Aligned_cols=47  Identities=13%  Similarity=0.138  Sum_probs=35.0

Q ss_pred             HhCCcEEEeCceeEEEEEcCCe--EEEEe-CCC--cEEEcCEEEEcCCCChH
Q psy3952           6 CELGGEIRLNQQVESFKENPES--VTIST-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~--~~V~t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      ++.|++++.+++|++++.+++.  +.+.. .+|  .++.+|.||+|+|.-.+
T Consensus       202 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~  253 (335)
T 2a87_A          202 NNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPR  253 (335)
T ss_dssp             HCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEEC
T ss_pred             ccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccC
Confidence            5689999999999999876532  44442 133  47999999999997543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=85.80  E-value=1.4  Score=38.51  Aligned_cols=47  Identities=9%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeC---CCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~~i~A~~VV~AaG~ws   51 (252)
                      .+++|++++.+++|+.|+.+...+.+...   ++.++.+|++|+|+|...
T Consensus        67 ~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p  116 (437)
T 4eqs_A           67 YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA  116 (437)
T ss_dssp             HHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEE
T ss_pred             HHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcc
Confidence            45779999999999999987777666543   334689999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=84.52  E-value=1.1  Score=39.44  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=39.9

Q ss_pred             CcEEEeCceeEEEEEcC-CeEEEEeC--CCc--EEEcCEEEEcCCCChHHH--HHHcCC
Q psy3952           9 GGEIRLNQQVESFKENP-ESVTISTK--QGD--HLESSYALVCAGLQADEM--ALKSGC   60 (252)
Q Consensus         9 G~~i~~~~~V~~i~~~~-~~~~V~t~--~g~--~i~A~~VV~AaG~ws~~l--~~~~g~   60 (252)
                      .++++.+++|++++.++ +++.|.+.  +|.  ++.||.||+|+|...+.-  ++.+|+
T Consensus       225 ~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl  283 (466)
T 3l8k_A          225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGL  283 (466)
T ss_dssp             CCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTC
T ss_pred             EEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCc
Confidence            48999999999999877 77777765  564  699999999999875432  344454

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=83.72  E-value=1.8  Score=38.72  Aligned_cols=49  Identities=12%  Similarity=0.053  Sum_probs=35.3

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcC----CeEEE--EeCCC---cEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENP----ESVTI--STKQG---DHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~----~~~~V--~t~~g---~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++|++++..+    +.+.|  ...+|   .++.+|.||+|+|.-.
T Consensus       258 ~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence            45678899999999988887532    34444  33444   2468999999999754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=83.33  E-value=1.2  Score=39.29  Aligned_cols=45  Identities=13%  Similarity=0.150  Sum_probs=34.4

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++.+. +  +.+.+.|.+.+|  .++.+|++|+|+|...
T Consensus       102 ~~~~~~v~~~~g~~~~-i--~~~~~~v~~~~G~~~~~~~d~lviAtG~~p  148 (468)
T 2qae_A          102 LFKKNKVTYYKGEGSF-E--TAHSIRVNGLDGKQEMLETKKTIIATGSEP  148 (468)
T ss_dssp             HHHHHTCEEEEEEEEE-E--ETTEEEEEETTSCEEEEEEEEEEECCCEEE
T ss_pred             HHHhCCCEEEEEEEEE-e--eCCEEEEEecCCceEEEEcCEEEECCCCCc
Confidence            3556799999887553 3  456688888777  5799999999999743

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=82.53  E-value=1.4  Score=38.78  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcE--EEcCEEEEcCCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDH--LESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~--i~A~~VV~AaG~w   50 (252)
                      +++.|++++.+ +|..+.  .+.+.|.+.+|..  +.+|+||+|+|..
T Consensus        99 ~~~~~v~~~~g-~v~~id--~~~~~V~~~~g~~~~~~~d~lviAtG~~  143 (466)
T 3l8k_A           99 SQYETLTFYKG-YVKIKD--PTHVIVKTDEGKEIEAETRYMIIASGAE  143 (466)
T ss_dssp             TTCTTEEEESE-EEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCEE
T ss_pred             HHhCCCEEEEe-EEEEec--CCeEEEEcCCCcEEEEecCEEEECCCCC
Confidence            45679998876 677665  4568888888867  9999999999963

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=82.33  E-value=1.7  Score=38.26  Aligned_cols=45  Identities=13%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCC-C-cEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQ-G-DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g-~~i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++.+ .+  +.+.+.|.+.+ | .++.+|+||+|+|...
T Consensus       106 ~~~~~gv~~~~g~~~-~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs~p  152 (474)
T 1zmd_A          106 LFKQNKVVHVNGYGK-IT--GKNQVTATKADGGTQVIDTKNILIATGSEV  152 (474)
T ss_dssp             HHHHTTCEEEESEEE-EE--ETTEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred             HHHhCCCEEEEEEEE-Ee--cCCEEEEEecCCCcEEEEeCEEEECCCCCC
Confidence            356789999988653 33  45678888876 4 4699999999999754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=81.92  E-value=1.4  Score=39.30  Aligned_cols=47  Identities=15%  Similarity=0.289  Sum_probs=35.2

Q ss_pred             HHHhCCcEEEeCceeEEEEEc----CCeEEEEeCCCc--EEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKEN----PESVTISTKQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~----~~~~~V~t~~g~--~i~A~~VV~AaG~ws   51 (252)
                      .+++.|++++.++ ++.+...    ++.+.|.+.+|.  .+.+|++|+|+|...
T Consensus       104 ~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A          104 QLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             HHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             HHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence            3567899999886 6655542    245778887775  699999999999754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=81.61  E-value=2.7  Score=36.91  Aligned_cols=43  Identities=14%  Similarity=0.115  Sum_probs=32.2

Q ss_pred             HHhC-CcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCC
Q psy3952           5 FCEL-GGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~w   50 (252)
                      .++. |++++.++ ++.++  .+.+.|.+.+|  .++.+|++|+|+|..
T Consensus       104 ~~~~~~v~~~~g~-~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs~  149 (467)
T 1zk7_A          104 LGGNPAITVVHGE-ARFKD--DQSLTVRLNEGGERVVMFDRCLVATGAS  149 (467)
T ss_dssp             HTTCTTEEEEEEE-EEEEE--TTEEEEEETTSSEEEEECSEEEECCCEE
T ss_pred             HhccCCeEEEEEE-EEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCCC
Confidence            3455 99988764 65554  45678888777  579999999999963

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=81.50  E-value=2.4  Score=39.84  Aligned_cols=48  Identities=13%  Similarity=0.129  Sum_probs=34.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE---eCCCcE------------------EEcCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS---TKQGDH------------------LESSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~---t~~g~~------------------i~A~~VV~AaG~ws~   52 (252)
                      +.+++.|++++.+++|++|+.  +++++.   ++.+..                  +.||.||+|+|.-.+
T Consensus       579 ~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          579 RRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            446788999999999999974  344443   222222                  999999999997654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=80.84  E-value=3.6  Score=37.40  Aligned_cols=50  Identities=10%  Similarity=0.110  Sum_probs=35.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEc------C---CeEEEE--eCCCcEEE--cCEEEEcCCCChH
Q psy3952           3 EEFCELGGEIRLNQQVESFKEN------P---ESVTIS--TKQGDHLE--SSYALVCAGLQAD   52 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~------~---~~~~V~--t~~g~~i~--A~~VV~AaG~ws~   52 (252)
                      +.+++.|+++++++.+++++..      +   +++.|.  ..+|.++.  +|.||+|+|.-.+
T Consensus       334 ~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~  396 (598)
T 2x8g_A          334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ  396 (598)
T ss_dssp             HHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEEC
T ss_pred             HHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccc
Confidence            3466789999999988888642      2   445443  34564555  9999999997643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=80.41  E-value=0.6  Score=43.85  Aligned_cols=43  Identities=12%  Similarity=0.084  Sum_probs=33.0

Q ss_pred             CcEEEeCceeE--EEEEcCCe-------EEE-EeCCCc--EEEcCEEEEcCCCCh
Q psy3952           9 GGEIRLNQQVE--SFKENPES-------VTI-STKQGD--HLESSYALVCAGLQA   51 (252)
Q Consensus         9 G~~i~~~~~V~--~i~~~~~~-------~~V-~t~~g~--~i~A~~VV~AaG~ws   51 (252)
                      |..|+.+++|+  +|.+.+++       ++| .+.+|.  ++.||+||+|+-...
T Consensus       360 g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~  414 (721)
T 3ayj_A          360 VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQ  414 (721)
T ss_dssp             HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHH
T ss_pred             CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHH
Confidence            66778899999  99986544       888 456674  699999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.22
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.09
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	98.95
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	98.69
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.08
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.91
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.66
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.63
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.44
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.25
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.2
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.05
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.94
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.93
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.92
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.88
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.81
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.79
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.74
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.69
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.68
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.66
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.64
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.55
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.45
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.43
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.4
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.38
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.2
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.18
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.12
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	95.91
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.83
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.68
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.6
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.51
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.45
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	95.4
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	95.2
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.97
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.86
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	94.82
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	94.51
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.36
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.12
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	92.85
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.27
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.54
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.5
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.39
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.12
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.32
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.27
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	89.36
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.97
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.83
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	87.29
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	86.68
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.16
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.03

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.47  E-value=6.5e-16  Score=129.17  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeee
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR   70 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~   70 (252)
                      |++.|+++|++|+++++|++|+.+++++. |.|++| +|+||+||||||+|+.+|++++|.  .+|+.+.+
T Consensus       154 l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~--~lP~~~~~  221 (305)
T d1pj5a2         154 LIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGM--AVPPDGGP  221 (305)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTC--CCCTTSCC
T ss_pred             HHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCC--cccccccc
Confidence            35678899999999999999999999864 999999 999999999999999999999997  46665543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.22  E-value=6e-12  Score=102.94  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeee
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG   71 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g   71 (252)
                      |++.|+++|++|+++|+|++|+++++.|.|+|++| +|.||.||||||+||..|++++|+. .....|..+
T Consensus       157 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~-~~~~~p~~~  225 (276)
T d1ryia1         157 YVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLN-NADGKPYIG  225 (276)
T ss_dssp             HHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCC-CCSSCCEEE
T ss_pred             HHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCC-cccccceec
Confidence            35678899999999999999999888899999999 9999999999999999999999974 223344433

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.14  E-value=4.4e-11  Score=81.31  Aligned_cols=87  Identities=17%  Similarity=0.246  Sum_probs=62.3

Q ss_pred             eeeeeeEEEEeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCc
Q psy3952          66 IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF  145 (252)
Q Consensus        66 ~~p~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (252)
                      ++|+|||++.+..+. ....+.++        ..+.|+.|..+|.+++|++.+..    +++.. .+.            
T Consensus         1 l~PvKGq~l~v~~~~-~~~~~~i~--------~~~~yiip~~~g~~~iG~T~e~~----~~d~~-~~~------------   54 (88)
T d1ryia2           1 FLPVKGECLSVWNDD-IPLTKTLY--------HDHCYIVPRKSGRLVVGATMKPG----DWSET-PDL------------   54 (88)
T ss_dssp             CEEEEEEEEEEECCS-SCCCSEEE--------ETTEEEEECTTSEEEEECCCEET----CCCCS-CCH------------
T ss_pred             CCCCCcEEEEEECCC-CccCCEEe--------CCCEEEEECCCCCEEEccEEEEC----CCCCC-CCH------------
Confidence            479999999997532 22333332        23578999999999999998753    33321 111            


Q ss_pred             cccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEe
Q psy3952         146 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA  196 (252)
Q Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~  196 (252)
                               +.++         .+++.+.+++|.|+..+|++.|+|+||.+
T Consensus        55 ---------~~~~---------~l~~~a~~~~P~l~~~~v~~~waGlRP~t   87 (88)
T d1ryia2          55 ---------GGLE---------SVMKKAKTMLPAIQNMKVDRFWAGLRPGT   87 (88)
T ss_dssp             ---------HHHH---------HHHHHHHHHCGGGGGSEEEEEEEEEEEEC
T ss_pred             ---------HHHH---------HHHHHHHHHCCCcCCCcEeEEEEeeCCCC
Confidence                     3344         44589999999999999999999999975

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.09  E-value=4.3e-11  Score=98.13  Aligned_cols=59  Identities=24%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      |++.|+++|++++++|+|++|+.++++|+|.|++| +|+|++||||||+|+..|++++|+
T Consensus       156 l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~  214 (281)
T d2gf3a1         156 YRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNL  214 (281)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTE
T ss_pred             cccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCC
Confidence            35678999999999999999999999999999999 999999999999999999999986

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=1.1e-09  Score=74.85  Aligned_cols=92  Identities=12%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             eeeeeeEEEEeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCc
Q psy3952          66 IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF  145 (252)
Q Consensus        66 ~~p~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (252)
                      +.|+|||++.++.+.   +.+.+.............|+.|..++ +++|++.+..    +++. ..+.            
T Consensus         1 i~PvrGQil~v~~P~---~~~~~~~~~~~~~~~~~~yivpr~~~-~viG~T~e~~----~~d~-~~~~------------   59 (93)
T d1kifa2           1 LQPGRGQIIKVDAPW---LKNFIITHDLERGIYNSPYIIPGLQA-VTLGGTFQVG----NWNE-INNI------------   59 (93)
T ss_dssp             CEEEEEEEEEEECTT---CCSEEEEECTTTCTTCSCEEEECSSS-EEEECCCEET----CCCC-SCCH------------
T ss_pred             CccccceEEEEcCCC---CccceeeccccccCCCceEEEECCCC-EEEEEEeecC----CCCC-CCCH------------
Confidence            479999999997532   22222111111112456788887654 8899997753    3222 1111            


Q ss_pred             cccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEe
Q psy3952         146 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA  196 (252)
Q Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~  196 (252)
                               +.++         .+++.+.+++|.|++.++.+.|+|+||..
T Consensus        60 ---------~~~~---------~i~~~a~~~~P~l~~~~i~~~~~GlRP~r   92 (93)
T d1kifa2          60 ---------QDHN---------TIWEGCCRLEPTLKDAKIVGEYTGFRPVR   92 (93)
T ss_dssp             ---------HHHH---------HHHHHHHHHSGGGGGCEEEEEEEEEEEEC
T ss_pred             ---------HHHH---------HHHHHHHHHHhhhcCCCeeeEEEeecCCC
Confidence                     3344         44589999999999999999999999974

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.69  E-value=3.2e-08  Score=67.67  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             eeeeeEEEEeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCcc
Q psy3952          67 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFW  146 (252)
Q Consensus        67 ~p~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (252)
                      .|+|||++.+..+.   ....+....    +....|+.|..+|.+++|+|.+..    +++. ..+.             
T Consensus         2 ~PvRGQ~~~v~~p~---~~~~~~~~~----~~~~~Yiipr~~g~vviG~T~e~~----~~d~-~~~~-------------   56 (95)
T d1c0pa2           2 EPIRGQTVLVKSPC---KRCTMDSSD----PASPAYIIPRPGGEVICGGTYGVG----DWDL-SVNP-------------   56 (95)
T ss_dssp             EEEEEEEEEEECCC---CCCEEECSC----TTCCEEEEEETTTEEEEECCCEET----CCCC-SCCH-------------
T ss_pred             CCcceEEEEEeCCC---CcccEEEec----CCCeEEEEECCCCEEEEEEEEEEC----CCcC-CCCH-------------
Confidence            68999999987532   222222111    133578999989999999998753    3322 1111             


Q ss_pred             ccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCC------CCCceecCCcceeE
Q psy3952         147 RLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIE------AGDIQRGPSGVRAQ  195 (252)
Q Consensus       147 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~------~~~i~~~w~G~rp~  195 (252)
                              +..+         .+++.+.+++|.|.      ..+|.+.|+|+||.
T Consensus        57 --------~~~~---------~il~~a~~~~P~L~~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          57 --------ETVQ---------RILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             --------HHHH---------HHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEE
T ss_pred             --------HHHH---------HHHHHHHHhCccccccccccCccEEEeEEEeCCC
Confidence                    3343         44589999999984      56788999999984

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.08  E-value=2.8e-06  Score=67.30  Aligned_cols=59  Identities=24%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH----------HHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD----------EMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~----------~l~~~~g~   60 (252)
                      .+.+++.|++|+++++|++|+.+++.+. |.+.+|+.++||+||+|+|.+|-          .+++.+|.
T Consensus       117 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~  186 (251)
T d2i0za1         117 LTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGH  186 (251)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTC
T ss_pred             HHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhccccee
Confidence            4678889999999999999999888764 78888878999999999998762          46666664

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1e-05  Score=58.45  Aligned_cols=47  Identities=23%  Similarity=0.302  Sum_probs=43.2

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~   49 (252)
                      +.++++|++++.++.|++++.+++++.|++++|.++.||.||.|+|.
T Consensus        91 ~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          91 EKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            56788999999999999999988889999999988999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=4.3e-05  Score=53.42  Aligned_cols=47  Identities=17%  Similarity=0.218  Sum_probs=41.0

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEEcCEEEEcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAG   48 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~A~~VV~AaG   48 (252)
                      .+.++++|++++.++.|+.+...++ .+.|++++|.++.+|.||.|+|
T Consensus        69 ~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          69 VEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            3567889999999999999988765 4788998887899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.64  E-value=4.8e-05  Score=53.19  Aligned_cols=46  Identities=13%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG   48 (252)
                      +..+++|+++++++.|++|+..+++ ..|.+++|.++.||.||+|+|
T Consensus        70 ~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          70 EQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            4678899999999999999986654 458888887899999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.63  E-value=3.5e-05  Score=61.13  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=46.1

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCe----EEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPES----VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGC   60 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~----~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~   60 (252)
                      .+.+++.|++|+++++|+++++..+.    +.+.++.+ +|+||+||+|+|..|          -.+++.+|.
T Consensus       116 ~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~-~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         116 KSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             HHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCE-EEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            45678899999999999999986553    45667766 999999999999775          256777765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.44  E-value=0.00013  Score=51.19  Aligned_cols=46  Identities=17%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG   48 (252)
                      +..+++|++++++++|++++.++++++|+..++   .++.||.|++|+|
T Consensus        71 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          71 KILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            557789999999999999999988877664332   4699999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.25  E-value=0.00034  Score=48.68  Aligned_cols=45  Identities=11%  Similarity=0.247  Sum_probs=38.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEEcCEEEEc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVC   46 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~A~~VV~A   46 (252)
                      .+..+++|++++++++|++++..++ .+.|++++|.++.||.|+.|
T Consensus        71 ~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          71 TKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence            3567889999999999999987654 57799999978999999987

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.20  E-value=0.00034  Score=49.87  Aligned_cols=46  Identities=26%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC--eEE-EEeCCCcEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE--SVT-ISTKQGDHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~--~~~-V~t~~g~~i~A~~VV~AaG   48 (252)
                      +..+++|++++++++|++|+...+  .+. |.+++|.++.||.||+|+|
T Consensus        85 ~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          85 HLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             hcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            446788999999999999987543  343 7889987899999999998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0003  Score=57.28  Aligned_cols=46  Identities=20%  Similarity=0.303  Sum_probs=41.7

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      +++.|++|+++++|++|..++++|.|+|.+|.+++||+||+|..+.
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~  262 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT  262 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred             HHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHH
Confidence            5677999999999999999999999999999789999999998763

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.94  E-value=0.00018  Score=57.14  Aligned_cols=46  Identities=15%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEe-CCC--cEEEcCEEEEcCCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIST-KQG--DHLESSYALVCAGLQ   50 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g--~~i~A~~VV~AaG~w   50 (252)
                      +++.|++|+++++|++|+.++++++|.+ ++|  .++.||+||+|++++
T Consensus       229 ~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         229 AASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            4566999999999999999888877543 232  369999999999976

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.93  E-value=0.00079  Score=54.36  Aligned_cols=51  Identities=12%  Similarity=0.117  Sum_probs=39.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCC-eEE-E--EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPE-SVT-I--STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~-~~~-V--~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++++++++|+++..+++ ++. |  ...++  ..|+|+.||+|+|.++.
T Consensus       152 ~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  208 (308)
T d1y0pa2         152 YDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  208 (308)
T ss_dssp             HHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccc
Confidence            4567889999999999999987654 443 4  32332  35999999999999974

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.92  E-value=0.0004  Score=57.08  Aligned_cols=49  Identities=18%  Similarity=0.104  Sum_probs=39.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC---C---cEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQ---G---DHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~---g---~~i~A~~VV~AaG~ws   51 (252)
                      ..|+..+..|+++|+|++++.++++|.|++.+   +   ....+|.||+|+|.++
T Consensus       121 ~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         121 IYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            34566788999999999999999999887533   2   1356999999999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.88  E-value=0.0006  Score=48.03  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=37.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE--eCCC--cEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS--TKQG--DHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t~~g--~~i~A~~VV~AaG   48 (252)
                      +..+++|++++.+++|++++.++++..|.  ..+|  ++++||.|++|+|
T Consensus        75 ~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          75 KQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            45678999999999999999888876554  3333  3699999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.81  E-value=0.0011  Score=46.37  Aligned_cols=42  Identities=14%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG   48 (252)
                      +..+++|++++++++|+++..  +  .|.+.+|.++.||.||.|+|
T Consensus        80 ~~l~~~GV~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          80 RYHAAQGVDLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHTTTCEEEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHCCcEEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence            456788999999999998753  3  35677777899999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.79  E-value=0.00073  Score=47.36  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=36.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE--EEeCC-C--cEEEcCEEEEcC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT--ISTKQ-G--DHLESSYALVCA   47 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~--V~t~~-g--~~i~A~~VV~Aa   47 (252)
                      .+.+++.|++|+++++|++++..+++++  +++.+ |  .+++||.|++||
T Consensus        73 ~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          73 QRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            3567899999999999999998877765  44433 2  359999999997

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.74  E-value=0.0011  Score=53.97  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=38.9

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE---EEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV---TISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~---~V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+.++|++|+++++|+++..++ +++   .+...++  ..|.|+.||+|||.++.
T Consensus       159 ~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         159 WDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             HHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            467888999999999999998754 343   3333332  25999999999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.69  E-value=0.0012  Score=45.89  Aligned_cols=46  Identities=20%  Similarity=0.361  Sum_probs=36.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe-EE-E---EeCCCcEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES-VT-I---STKQGDHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~-V---~t~~g~~i~A~~VV~AaG   48 (252)
                      +..+++|++++.+++|++|+.++++ +. +   ..+++.++.||.||+|+|
T Consensus        71 ~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          71 DRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            4567889999999999999987654 32 2   234455799999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.68  E-value=0.0018  Score=44.79  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-eEEEEeCCCcEEE-cCEEEEc
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLE-SSYALVC   46 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t~~g~~i~-A~~VV~A   46 (252)
                      +..+++|++++++++|++++..++ .++|++++|..+. +|.||.|
T Consensus        71 ~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          71 NDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence            456788999999999999997654 5779999986665 6999987

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.66  E-value=0.0012  Score=53.74  Aligned_cols=51  Identities=22%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEc-CCeE---EEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKEN-PESV---TISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~---~V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.++++|++++++++|+++..+ ++++   .+...++  ..|.|+.||+|+|.|+.
T Consensus       155 ~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         155 RKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccccc
Confidence            46688999999999999998774 4444   3444444  35899999999999974

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.64  E-value=0.001  Score=54.01  Aligned_cols=51  Identities=18%  Similarity=0.277  Sum_probs=42.1

Q ss_pred             hHHHhCCc--EEEeCceeEEEEEc--CCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952           3 EEFCELGG--EIRLNQQVESFKEN--PESVTISTKQGDHLESSYALVCAGLQADE   53 (252)
Q Consensus         3 ~~a~~~G~--~i~~~~~V~~i~~~--~~~~~V~t~~g~~i~A~~VV~AaG~ws~~   53 (252)
                      +.|++.+.  .|+++|+|+++..+  .+.|+|+|.++.+++||.||+|+|..+..
T Consensus        93 ~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~  147 (298)
T d1w4xa1          93 FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDA  147 (298)
T ss_dssp             HHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCC
T ss_pred             HHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccc
Confidence            34667777  59999999999853  46799999888789999999999987654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.55  E-value=0.0012  Score=53.09  Aligned_cols=47  Identities=26%  Similarity=0.527  Sum_probs=38.4

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEE--e--CCCcEEEcCEEEEcCCCCh
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTIS--T--KQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~--t--~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.|++++.+++|++|+.++++++|.  +  .++.+++||+||+|+++++
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~  295 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRA  295 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHH
Confidence            567899999999999999999887754  2  3345799999999997643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.45  E-value=0.0021  Score=44.90  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEc
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVC   46 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~A   46 (252)
                      +..+++|++++++++|++++.++....|.++.+ ++.||.||+|
T Consensus        80 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~-~i~~D~vi~a  122 (123)
T d1nhpa2          80 EEMEANNITIATGETVERYEGDGRVQKVVTDKN-AYDADLVVVA  122 (123)
T ss_dssp             HHHHTTTEEEEESCCEEEEECSSBCCEEEESSC-EEECSEEEEC
T ss_pred             HHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCC-EEECCEEEEE
Confidence            456788999999999999987544344666555 9999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.0012  Score=46.09  Aligned_cols=44  Identities=27%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCe--EEEEeC-----CCcEEEcCEEEEc
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPES--VTISTK-----QGDHLESSYALVC   46 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~-----~g~~i~A~~VV~A   46 (252)
                      +..+++|++|+++++|++++..+++  +.++..     ++++++||.|++|
T Consensus        72 ~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          72 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             HHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            4577899999999999999987655  334432     2346999999986

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.40  E-value=0.00077  Score=46.58  Aligned_cols=44  Identities=25%  Similarity=0.382  Sum_probs=33.0

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC--CcEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQ--GDHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~--g~~i~A~~VV~AaG   48 (252)
                      +..+++|++++++++|++++  ++...+...+  +.++.||.||+|+|
T Consensus        70 ~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          70 ESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             HHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            55678899999999999985  3333333322  34799999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=50.69  Aligned_cols=55  Identities=15%  Similarity=0.224  Sum_probs=42.1

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH--HHHHHcCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD--EMALKSGC   60 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~--~l~~~~g~   60 (252)
                      .++++|++++++++|+.|+.++.  +|++++|.++.+|.+|+|+|.-..  .+....|+
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl  148 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGL  148 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTC
T ss_pred             HHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeeeecchhhhhhccch
Confidence            35678999999999999987665  467788888999999999995432  34444443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.20  E-value=0.0038  Score=42.91  Aligned_cols=45  Identities=22%  Similarity=0.388  Sum_probs=35.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEe-CCC--cEEEcCEEEEc
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTIST-KQG--DHLESSYALVC   46 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g--~~i~A~~VV~A   46 (252)
                      .+..+++|+++++++.|++++..++++.|.. .+|  .++.||.|++.
T Consensus        70 ~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          70 KKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             HHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            3567889999999999999998888876543 233  46999999874

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.18  E-value=0.00038  Score=53.89  Aligned_cols=57  Identities=28%  Similarity=0.386  Sum_probs=38.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL   76 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~   76 (252)
                      .+.++++|++|+.+ +|++++.          -+ ...+|.||||+|.|+..+.   +   +.+..|.+++.+..
T Consensus       149 ~~~~~~~G~~~~~~-~v~~l~~----------~~-~~~~d~vVnctG~~a~~l~---~---d~~~~~~r~~~lr~  205 (246)
T d1kifa1         149 TERLTERGVKFFLR-KVESFEE----------VA-RGGADVIINCTGVWAGVLQ---P---DPLQVRLEREQLRF  205 (246)
T ss_dssp             HHHHHHTTCEEEEC-CCCCHHH----------HH-HTTCSEEEECCGGGHHHHS---C---CTTSCEEEEEEEES
T ss_pred             HHHHHHCCCEEEEe-EeCCHHH----------hc-cCCCCEEEECCcccccccC---C---CCCeeccceEEEee
Confidence            46788899998764 4554421          11 3457999999999998774   3   34566777776554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0043  Score=43.29  Aligned_cols=46  Identities=24%  Similarity=0.237  Sum_probs=36.4

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEE---eCCC------cEEEcCEEEEcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTIS---TKQG------DHLESSYALVCAG   48 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~---t~~g------~~i~A~~VV~AaG   48 (252)
                      +..+++|++++.+++|++|+..++++.+.   ...|      ..+.||.|+.|+|
T Consensus        71 ~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          71 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            45678999999999999999988876543   2222      2578999999998

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=95.91  E-value=0.0075  Score=50.25  Aligned_cols=56  Identities=18%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             HHhCCcEEEeCceeEEEEEcCC----e---EEEEeCCC--cEEEcCE-EEEcCCC-ChHHHHHHcCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPE----S---VTISTKQG--DHLESSY-ALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~----~---~~V~t~~g--~~i~A~~-VV~AaG~-ws~~l~~~~g~   60 (252)
                      +++.+++|++++.|++|..+++    +   +.+.+.+|  .++.|++ ||+|||+ .+..|+...|+
T Consensus       235 ~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGI  301 (385)
T d1cf3a1         235 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  301 (385)
T ss_dssp             TTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             hcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCC
Confidence            4456999999999999976543    3   33445556  4588887 9999996 57888888886

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.83  E-value=0.0031  Score=43.86  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=34.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~   49 (252)
                      +..+++|++++++++|++++.+  +  +.++.+ .+.||.||.|+|.
T Consensus        80 ~~l~~~GV~~~~~~~v~~~~~~--~--v~~~~~-~i~~D~vi~a~Gv  121 (122)
T d1xhca2          80 DMLEETGVKFFLNSELLEANEE--G--VLTNSG-FIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHTTEEEECSCCEEEECSS--E--EEETTE-EEECSCEEEECCE
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC--E--EEeCCC-EEECCEEEEEEEe
Confidence            4577899999999999988543  2  456666 8999999999995

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.68  E-value=0.0049  Score=50.70  Aligned_cols=56  Identities=18%  Similarity=0.350  Sum_probs=39.7

Q ss_pred             hHHHhCC-cEEEeCceeEEEEEcCCe-E--EEE--eCCC-----cEEEcCEEEEcCCCC-hHHHHHHc
Q psy3952           3 EEFCELG-GEIRLNQQVESFKENPES-V--TIS--TKQG-----DHLESSYALVCAGLQ-ADEMALKS   58 (252)
Q Consensus         3 ~~a~~~G-~~i~~~~~V~~i~~~~~~-~--~V~--t~~g-----~~i~A~~VV~AaG~w-s~~l~~~~   58 (252)
                      ..|++.| ++|+.+|+|++|+.++++ +  .|+  ...+     .++.|+.||+|||+. +..|+...
T Consensus       226 ~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         226 AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             HHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHHHhC
Confidence            4566776 999999999999987653 3  232  2222     368999999999974 66665433

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.60  E-value=0.012  Score=40.68  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             HHHHHHHHhccCCCCCCceecCCcceeE
Q psy3952         168 MRVNELKQYIEEIEAGDIQRGPSGVRAQ  195 (252)
Q Consensus       168 ~~~~~~~~~~P~l~~~~i~~~w~G~rp~  195 (252)
                      ..++.+.+++|.|+...|...++|..++
T Consensus        91 ~~~e~a~~r~P~l~~~gi~~~~NGp~sf  118 (119)
T d1pj5a3          91 PAWEATKQLLPALADSEIEDGFNGIFSF  118 (119)
T ss_dssp             HHHHHHHHHCGGGGGSCEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCcccccccceeecCccc
Confidence            3458999999999999999999996544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.51  E-value=0.013  Score=45.42  Aligned_cols=53  Identities=9%  Similarity=0.044  Sum_probs=45.6

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHH
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALK   57 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~   57 (252)
                      ....+++++.+++|+++...+++|+|++.+|.++++|.+|.|.|.++..-...
T Consensus       106 ~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~~~  158 (265)
T d2voua1         106 ELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRL  158 (265)
T ss_dssp             HHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHHHHH
T ss_pred             HhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccccccccc
Confidence            34568889999999999999999999999998899999999999998655433

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.45  E-value=0.0061  Score=50.20  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=37.8

Q ss_pred             HHHhCC-cEEEeCceeEEEEEcCCe-EEE--E-eC-CC-----cEEEcCEEEEcCCC-ChHHHHH
Q psy3952           4 EFCELG-GEIRLNQQVESFKENPES-VTI--S-TK-QG-----DHLESSYALVCAGL-QADEMAL   56 (252)
Q Consensus         4 ~a~~~G-~~i~~~~~V~~i~~~~~~-~~V--~-t~-~g-----~~i~A~~VV~AaG~-ws~~l~~   56 (252)
                      .|.+.| ++|+++++|++|..++++ +.|  . .+ .+     .+++||.||+|||+ .+..|+-
T Consensus       231 ~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL  295 (370)
T d3coxa1         231 QAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLV  295 (370)
T ss_dssp             HHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHHH
Confidence            455555 799999999999987654 333  2 21 22     25899999999996 5666654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0095  Score=48.11  Aligned_cols=48  Identities=8%  Similarity=-0.002  Sum_probs=37.4

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      ++..|++++++++|+++..+++++. |   .+.+|  ..+.|+.||+|+|.++.
T Consensus       145 ~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         145 LQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             TTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence            4456899999999999998887653 2   24566  34689999999999764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=95.20  E-value=0.016  Score=46.81  Aligned_cols=51  Identities=14%  Similarity=0.128  Sum_probs=40.4

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEE---EE-eCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVT---IS-TKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~---V~-t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|++|+.+++|+++..+++++.   +. ..+|  ..|.|+.||+|+|.+..
T Consensus       165 ~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         165 ANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            4677889999999999999998887643   22 3445  35899999999999864

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.97  E-value=0.014  Score=48.74  Aligned_cols=56  Identities=20%  Similarity=0.109  Sum_probs=40.3

Q ss_pred             HHhCCcEEEeCceeEEEEEc--CC--e---EEEEeCCC--cEEEcCE-EEEcCCC-ChHHHHHHcCC
Q psy3952           5 FCELGGEIRLNQQVESFKEN--PE--S---VTISTKQG--DHLESSY-ALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~--~~--~---~~V~t~~g--~~i~A~~-VV~AaG~-ws~~l~~~~g~   60 (252)
                      +.+.+++|++++.|++|..+  ++  +   +.+.+.+|  .++.|++ ||+|||+ .+..|+...|+
T Consensus       241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGI  307 (391)
T d1gpea1         241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (391)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             ccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCC
Confidence            34569999999999998543  22  2   33445555  2588987 9999997 47888877775

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.86  E-value=0.03  Score=38.61  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=33.6

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC----CeEEEE--eCCC---cEEEcCEEEEcCC
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP----ESVTIS--TKQG---DHLESSYALVCAG   48 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~----~~~~V~--t~~g---~~i~A~~VV~AaG   48 (252)
                      .+.++++|++|++++.|++++...    +...|+  ..++   ....+|.|++|.|
T Consensus        67 ~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          67 GEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            356789999999999999997632    234443  2222   2467899999988

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.023  Score=43.86  Aligned_cols=44  Identities=9%  Similarity=0.018  Sum_probs=37.1

Q ss_pred             CCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH
Q psy3952           8 LGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD   52 (252)
Q Consensus         8 ~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~   52 (252)
                      .+..+++. +|+++..+++++. |.|.+|.+|.|+.||+|+|...+
T Consensus        81 ~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          81 RPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             TTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             cCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            47888764 7899988888765 99999878999999999998764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=94.51  E-value=0.018  Score=47.31  Aligned_cols=56  Identities=14%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             HHh-CCcEEEeCceeEEEEEcCCeEE-EEeCC-----C--cEEEcCE-EEEcCCC-ChHHHHHHcCC
Q psy3952           5 FCE-LGGEIRLNQQVESFKENPESVT-ISTKQ-----G--DHLESSY-ALVCAGL-QADEMALKSGC   60 (252)
Q Consensus         5 a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t~~-----g--~~i~A~~-VV~AaG~-ws~~l~~~~g~   60 (252)
                      |.+ .+.+|++++.|++|..++++.+ |+..+     +  .++.|++ ||+|||+ .+..|+...|+
T Consensus       200 a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGI  266 (360)
T d1kdga1         200 ALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGI  266 (360)
T ss_dssp             HHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTB
T ss_pred             hhcccccccccCcEEEEEEEeCCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCC
Confidence            444 4589999999999999888754 65421     2  2355554 9999995 57888877776

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.36  E-value=0.032  Score=41.43  Aligned_cols=48  Identities=13%  Similarity=0.188  Sum_probs=39.2

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCC--cEEEcCEEEEcCCCCh
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTIS-TKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      ..+++|++++.+++|++|+.+++.+++. +.+|  .++.+|.+|+|+|.+.
T Consensus        65 ~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          65 KMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeeccee
Confidence            4678899999999999999888877765 3334  3578999999999875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.12  E-value=0.011  Score=45.13  Aligned_cols=35  Identities=9%  Similarity=0.029  Sum_probs=30.9

Q ss_pred             CeEEEeccCCccccchHHHHHHHHHHHHhhccccc
Q psy3952         214 RTLHCRNAPSPAATSSLAIAKHILNELRREFKLDE  248 (252)
Q Consensus       214 ~~~~~~G~~~~G~t~a~~~g~~va~~i~~~~~~~~  248 (252)
                      -++++.|++|.|+|+++++|..+++++.+.++.+.
T Consensus       211 ~vvh~yghgg~G~~l~~G~a~~~~~lv~~~l~~~~  245 (246)
T d1kifa1         211 EVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERN  245 (246)
T ss_dssp             EEEEEECCGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEecCCCCCeEEeehHHHHHHHHHHHHHHHhcC
Confidence            47789999999999999999999999998876544

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=92.85  E-value=0.055  Score=44.18  Aligned_cols=58  Identities=17%  Similarity=0.174  Sum_probs=39.8

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC---eE---EEEeCCCc----EEEcCE-EEEcCCCC-hHHHHHHcCC
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE---SV---TISTKQGD----HLESSY-ALVCAGLQ-ADEMALKSGC   60 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~---~~---~V~t~~g~----~i~A~~-VV~AaG~w-s~~l~~~~g~   60 (252)
                      ..+.+.+++|.+++.|+++..+.+   +.   .+...+|.    .+.|+. ||+|||+. +..|+...|+
T Consensus       202 ~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGI  271 (351)
T d1ju2a1         202 NKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (351)
T ss_dssp             GGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             ccchhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCC
Confidence            345677999999999999987532   32   33444441    255655 99999975 6777777665

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.27  E-value=0.13  Score=36.51  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=41.9

Q ss_pred             HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952           4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC   60 (252)
Q Consensus         4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~   60 (252)
                      ..++.|++++.+++|+.++....  .+..+.+ ++.+|.+|+|+|.-...+....|+
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~~~~--~~~~~~~-~i~~D~li~a~G~~~~~~~~~~gl  114 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDRGRK--VVITEKG-EVPYDTLVLATGAPNVDLARRSGI  114 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEETTTT--EEEESSC-EEECSEEEECCCEECCHHHHHTTC
T ss_pred             HHHhccceeeeeccccccccccc--ccccccc-ccccceeEEEEEecCCchhhhcCc
Confidence            35577999999999999864432  3445555 899999999999988778777775

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.54  E-value=0.05  Score=41.41  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             CeEEEeccCCccccchHHHHHHHHHHHHhhcc
Q psy3952         214 RTLHCRNAPSPAATSSLAIAKHILNELRREFK  245 (252)
Q Consensus       214 ~~~~~~G~~~~G~t~a~~~g~~va~~i~~~~~  245 (252)
                      .+++++|+++.|+++++++|+.++++|.+.++
T Consensus       233 ~vv~~~g~~g~G~~~s~g~a~~~~~lv~~~~~  264 (268)
T d1c0pa1         233 TLVHAYGFSSAGYQQSWGAAEDVAQLVDEAFQ  264 (268)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999987653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.50  E-value=0.17  Score=36.68  Aligned_cols=43  Identities=19%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952           6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ   50 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w   50 (252)
                      ...+++++.+++|+++..+..  ++.+.+|.++.+|.||.|+|.-
T Consensus        66 ~~~~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          66 RAPEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             GSTTCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             hcCCeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEEEE
Confidence            356899999999999876654  4567788799999999999964

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.39  E-value=0.15  Score=39.43  Aligned_cols=31  Identities=3%  Similarity=-0.093  Sum_probs=28.0

Q ss_pred             CCeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         213 GRTLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       213 ~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      ++++++.|+++|||.++|.+|+.+++++...
T Consensus       230 ~~~~~~~g~~g~g~~~~p~~G~~~~~~~~~~  260 (281)
T d2gf3a1         230 SNVVIAAGFSGHGFKFSSGVGEVLSQLALTG  260 (281)
T ss_dssp             EEEEEEECCTTCCGGGHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeccCCcccccChhHHHHHHHHHhcC
Confidence            5888999999999999999999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.12  E-value=0.14  Score=38.44  Aligned_cols=45  Identities=27%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL   49 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~   49 (252)
                      .+..+..+..+++|..+...++.+.|++.+|..+.+|+++.+...
T Consensus       220 ~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         220 GKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             CCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             hhhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCH
Confidence            345688899999999999999999999999978999999998765

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.32  E-value=0.23  Score=37.91  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=40.2

Q ss_pred             HHhCCcEEEeCceeEEEEEcCCeEEEEeCCC----cEEEcCEEEEcCCCChHH
Q psy3952           5 FCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQADE   53 (252)
Q Consensus         5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g----~~i~A~~VV~AaG~ws~~   53 (252)
                      ....+.++.++++|+.+...++++.|.+.+|    .++.||.||-|-|.+|..
T Consensus       116 ~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~v  168 (288)
T d3c96a1         116 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAV  168 (288)
T ss_dssp             HHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHH
T ss_pred             HhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCcccee
Confidence            3456889999999999999888887765443    369999999999999864

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.27  E-value=0.07  Score=43.09  Aligned_cols=55  Identities=15%  Similarity=0.148  Sum_probs=38.9

Q ss_pred             HhCCcEEEeCceeEEEEEcC--CeEE-EE---eCCC--cEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952           6 CELGGEIRLNQQVESFKENP--ESVT-IS---TKQG--DHLESSYALVCAGLQA-DEMALKSGC   60 (252)
Q Consensus         6 ~~~G~~i~~~~~V~~i~~~~--~~~~-V~---t~~g--~~i~A~~VV~AaG~ws-~~l~~~~g~   60 (252)
                      .+.|++|++++.|++|..++  ++++ |+   +.+|  ..++|+.||+|||++- ..|+...|+
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~  292 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGF  292 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTS
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhccc
Confidence            45589999999999998864  3332 43   3344  3588999999999984 455555554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=89.36  E-value=0.034  Score=42.46  Aligned_cols=58  Identities=22%  Similarity=0.154  Sum_probs=36.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL   76 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~   76 (252)
                      .+.++++|++|+.. +|+++           ++. ...|+.||+|+|.|+..+....+.    .+.|.++.....
T Consensus       149 ~~~~~~~Gv~i~~~-~v~~~-----------~~~-~~~~~~vv~a~G~~a~~l~~~~~~----~~~~~~~~~~~~  206 (268)
T d1c0pa1         149 ARELQKLGATFERR-TVTSL-----------EQA-FDGADLVVNATGLGAKSIAGIDDQ----ARGGPRVEAERI  206 (268)
T ss_dssp             HHHHHHTTCEEEEC-CCSBG-----------GGT-CSSCSEEEECCGGGGGTSBTTCCT----TTTSCEEEEEEE
T ss_pred             HHHHHHCCCEEEEe-Eecch-----------HHc-cccceEEEECCchhhhhhhhhcCc----cccccccceEEE
Confidence            35677888887643 23321           223 567899999999999887665543    344444544443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.97  E-value=0.19  Score=36.90  Aligned_cols=47  Identities=13%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++++.|+++... .|++++..++.+.+.|..+ .+.++.++.+.|...
T Consensus        75 ~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~~~~a~g~~~  121 (192)
T d1vdca1          75 KQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSK-AILADAVILAIGAVA  121 (192)
T ss_dssp             HHHHHTTCEEECC-CCCEEECSSSSEEEECSSE-EEEEEEEEECCCEEE
T ss_pred             HHHHhhcceeeee-eEEecccccCcEEecccce-eeeeeeEEEEeeeee
Confidence            4577889999765 6999988887788998888 899999999999753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.83  E-value=0.28  Score=37.66  Aligned_cols=38  Identities=11%  Similarity=-0.048  Sum_probs=31.6

Q ss_pred             ceEEEecC---CeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952         206 DFVFHSAG---RTLHCRNAPSPAATSSLAIAKHILNELRRE  243 (252)
Q Consensus       206 ~~~i~~~~---~~~~~~G~~~~G~t~a~~~g~~va~~i~~~  243 (252)
                      .++++.+|   +++.+.|+.++|+.++|..|+.+++++.+.
T Consensus       221 ~p~~~~~p~~~~~~~~~g~~~~gi~~~p~~g~~i~~~~~~~  261 (276)
T d1ryia1         221 KPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNK  261 (276)
T ss_dssp             CCEEEEETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTTC
T ss_pred             cceeccccCCCCEEECCCCCCCeEEECccHHHHHHHHHhcC
Confidence            34566554   688999999999999999999999988754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=0.51  Score=37.57  Aligned_cols=51  Identities=10%  Similarity=0.038  Sum_probs=37.7

Q ss_pred             hhHHHhCCcEEEeCceeEEEEEcC-CeE-E---EEeCCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKENP-ESV-T---ISTKQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~---V~t~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.+++++.++.++++.... +.+ .   ....+|  ..+.|+.||+|+|.+..
T Consensus       150 ~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             HHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            456778899999999999987743 332 2   334445  34889999999999864

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.58  Score=36.64  Aligned_cols=49  Identities=4%  Similarity=0.013  Sum_probs=35.9

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCC-------eEE-E--E-eCCC--cEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPE-------SVT-I--S-TKQG--DHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~-------~~~-V--~-t~~g--~~i~A~~VV~AaG~ws   51 (252)
                      +.+++.|++++.+++++++..+++       ++. |  . ..++  ..+.|+.||+|+|.+.
T Consensus       146 ~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~  207 (305)
T d1chua2         146 KALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  207 (305)
T ss_dssp             HHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccc
Confidence            345667999999999999987653       332 3  2 2334  3489999999999876

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.16  E-value=0.55  Score=36.23  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             hhHHHhCCcEEEeCceeEEEEE-cCCeEEEEe-CCC--cEEEcCEEEEcCCCChH
Q psy3952           2 GEEFCELGGEIRLNQQVESFKE-NPESVTIST-KQG--DHLESSYALVCAGLQAD   52 (252)
Q Consensus         2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~V~t-~~g--~~i~A~~VV~AaG~ws~   52 (252)
                      .+.+++.|..+..++.+..... +++++.|.. .+|  .+++||.||-|-|.+|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~  164 (292)
T d1k0ia1         110 MEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (292)
T ss_dssp             HHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCCc
Confidence            3556777888888877666554 445565543 344  35889999999999874

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=0.73  Score=33.24  Aligned_cols=47  Identities=13%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952           3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA   51 (252)
Q Consensus         3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws   51 (252)
                      +++.+.|+++... .|+.+...++.+.|++..+ .+.++.+++|+|.-.
T Consensus        70 ~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~~~  116 (190)
T d1trba1          70 EHATKFETEIIFD-HINKVDLQNRPFRLNGDNG-EYTCDALIIATGASA  116 (190)
T ss_dssp             HHHHHTTCEEECC-CEEEEECSSSSEEEEESSC-EEEEEEEEECCCEEE
T ss_pred             HHHHhcCcEEecc-eeEEEecCCCcEEEEEeee-eEeeeeeeeecceee
Confidence            4577889988764 7999988888888888888 999999999999743