Psyllid ID: psy3959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MVVNDNKGFWKKNSHNVPGRPSPKKSVFSSSSQSNANSSFQAYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVINNHKTKQFETSSSSRNSKVNESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLSGSKTKR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccc
ccccccccEEcccccccccccccccccccccccccccccHHHHHccccccccccccHccccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEccHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEEccccccccccHHccHHHHHHHHHHHHHHHHHccccccEccccccccHHHHHHHHHccccccccccccHccccHHHHHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHEEEHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHcccccccc
mvvndnkgfwkknshnvpgrpspkksvfssssqsnanSSFQAYQAsisdawvidddefcspnvnisKKVAQSAALNVINnhktkqfetssssrnskvnesessKIAKFNALLNLNLLNLEELRSLAwsgipnqvrpDAWRLLagylptssERRQQVLERKRTEYWVFVKQYydtdrdetyQDIYRQIHidiprmsplMMLFQQKLVQEMFERILFIWAIrhpasgyvqgindLVTPFFVVFLQeflpvgtdleqldlstlpkeqrdiieadsfccLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNlltrevplrcSIRLWDtylaesddfAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLqnlptsnwsdhdIGVLVAEAYRLKVAfadapnhlsgsktkr
mvvndnkgfwkknshnvpgrpspKKSVFSSSSQSNANSSFQAYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVINnhktkqfetssssrnskvnesessKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYlptsserrqqvlerkrteywVFVKqyydtdrdetyQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAfadapnhlsgsktkr
MVVNDNKGFWKKNSHNVPGRpspkksvfssssqsnanssfqaYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVINNHKTKQFETssssrnskvnesesskIAKFNAllnlnllnleelRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLSGSKTKR
******************************************YQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVI**************************IAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPT******QVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFAD************
**********************************************************************************************************KFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVF***************IYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVA***************
MVVNDNKGFWKKNSHN***********************FQAYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVINNHKT*******************SKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPN*********
***************************************************************************************************SESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADA***********
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MVVNDNKGFWKKNSHNVPGRPSPKKSVFSSSSQSNANSSFQAYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVINNHKTKQFETSSSSRNSKVNESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLSGSKTKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q95LL3505 TBC1 domain family member N/A N/A 0.974 0.831 0.475 1e-127
Q9NU19505 TBC1 domain family member yes N/A 0.974 0.831 0.479 1e-127
Q8WUA7517 TBC1 domain family member no N/A 0.770 0.642 0.613 1e-121
Q95KI1497 TBC1 domain family member N/A N/A 0.761 0.659 0.615 1e-121
Q8R5A6516 TBC1 domain family member no N/A 0.761 0.635 0.609 1e-120
O59737514 GTPase-activating protein yes N/A 0.765 0.642 0.483 8e-88
Q08484637 GTPase-activating protein yes N/A 0.788 0.533 0.384 1e-71
Q8R3D1400 TBC1 domain family member no N/A 0.399 0.43 0.338 2e-20
Q9NVG8400 TBC1 domain family member no N/A 0.401 0.432 0.340 3e-20
Q8TC07691 TBC1 domain family member no N/A 0.547 0.341 0.233 7e-15
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 Back     alignment and function desciption
 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/505 (47%), Positives = 315/505 (62%), Gaps = 85/505 (16%)

Query: 1   MVVNDNKGFWKKNSHNVPGRPSP--------------------KKSVFSSSSQSNANSSF 40
           M  +++K FWK+ S  +PG   P                    +  V +   ++   SSF
Sbjct: 1   MAADNSKQFWKR-SAKLPGSIQPVYGAQHPPLDPRLTKNFIKERSKVGTVPLKNKKASSF 59

Query: 41  QAYQASISDAWVIDDDE---FCSPNV-NISKKVAQSAALNVINNH-------KTKQFETS 89
             +  + SDAW I DDE   F SP+   ++ KVA + A  V+ NH       +  Q  TS
Sbjct: 60  HEFARNTSDAWDIGDDEEEDFSSPSFQTLNSKVALATAAQVLENHSKLRVKPERSQSTTS 119

Query: 90  SSSRNSKVNES------------------------------------------------- 100
               N KV +S                                                 
Sbjct: 120 DVPANYKVIKSSSDAQLSRNSSDTCLRNPLHKQQSLPLRPIIPLVARISDQNASGAPPMT 179

Query: 101 --ESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLE 158
             E +++ KF  LL+ +  +L+ELR  +W G+P +VRP  WRLL+GYLP ++ERR+  L+
Sbjct: 180 VREKTRLEKFRQLLSSHNTDLDELRKCSWPGVPREVRPVTWRLLSGYLPANTERRKLTLQ 239

Query: 159 RKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWA 218
           RKR EY+ F++QYYD+  +E +QD YRQIHIDIPR +PL+ LFQQ LVQE+FERILFIWA
Sbjct: 240 RKREEYFGFIEQYYDSRNEEHHQDTYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWA 299

Query: 219 IRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSK 278
           IRHPASGYVQGINDLVTPFFVVFL E+  V  D+E  D++ L ++    IEADSF C+SK
Sbjct: 300 IRHPASGYVQGINDLVTPFFVVFLSEY--VEEDVENFDVTNLSQDMLRSIEADSFWCMSK 357

Query: 279 FLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTRE 338
            LDGIQDNY FAQ GIQ+KV  L++L+ RID  +HNH  ++ V+YLQF+FRWMNNLL RE
Sbjct: 358 LLDGIQDNYTFAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRE 417

Query: 339 VPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNW 398
           +PLRC+IRLWDTY +E + F+ F LYVCAAFL+ WR+++L E DFQGL+++LQNLPT +W
Sbjct: 418 LPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHW 477

Query: 399 SDHDIGVLVAEAYRLKVAFADAPNH 423
            + +IG+L+AEAYRLK  FADAPNH
Sbjct: 478 GNEEIGLLLAEAYRLKYMFADAPNH 502
May act as a GTPase-activating protein for Rab family protein(s).
Macaca fascicularis (taxid: 9541)
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 Back     alignment and function description
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2 Back     alignment and function description
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2 Back     alignment and function description
>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3 Back     alignment and function description
>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1 Back     alignment and function description
>sp|Q08484|GYP1_YEAST GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1 Back     alignment and function description
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 Back     alignment and function description
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
328718320470 PREDICTED: TBC1 domain family member 22B 0.979 0.897 0.668 1e-158
242004731468 conserved hypothetical protein [Pediculu 0.969 0.893 0.613 1e-155
347972069510 AGAP004522-PA [Anopheles gambiae str. PE 0.969 0.819 0.593 1e-151
328718322433 PREDICTED: TBC1 domain family member 22B 0.955 0.951 0.656 1e-151
357631793481 hypothetical protein KGM_15668 [Danaus p 0.946 0.848 0.577 1e-148
198453453 547 GA19101 [Drosophila pseudoobscura pseudo 0.979 0.771 0.562 1e-147
194744903 538 GF16495 [Drosophila ananassae] gi|190627 0.976 0.782 0.567 1e-147
91092770464 PREDICTED: similar to AGAP004522-PA [Tri 0.974 0.905 0.597 1e-147
195355584 547 GM15063 [Drosophila sechellia] gi|194129 0.965 0.760 0.554 1e-146
195498391 546 GE25705 [Drosophila yakuba] gi|194182604 0.965 0.761 0.554 1e-146
>gi|328718320|ref|XP_001948071.2| PREDICTED: TBC1 domain family member 22B-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 308/461 (66%), Positives = 360/461 (78%), Gaps = 39/461 (8%)

Query: 3   VNDN-----KGFWKKNSHNVPGRPSPKKSVFSSSSQSNANSSFQAYQASISDAWVID-DD 56
           VNDN       FWKKN  N+PGR SPKK   S S  S+A++SF  +Q S+SDAW I+ +D
Sbjct: 17  VNDNDMNLKNSFWKKNIRNLPGRASPKKE--SKSVSSSASTSFDDFQESVSDAWEIEAED 74

Query: 57  EFCS-PNVNISKKVAQSAALNVINNHKTK---------------QFETSS----SSRNS- 95
           E     +V ISK+VA SAA+NVINNHK                 Q E+SS     SR++ 
Sbjct: 75  EILRISDVKISKRVAHSAAVNVINNHKASIEEIHKSKNYSNSDPQGESSSQTYKESRHTE 134

Query: 96  -KVN----ESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSS 150
            +VN    E +++K+ KF  LL  NLLNLE+L+ L+WSG+P +VRP  WRLLAGYLPTS+
Sbjct: 135 NRVNFLNSEVDTNKLTKFQVLLESNLLNLEDLKKLSWSGVPVEVRPMTWRLLAGYLPTST 194

Query: 151 ERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMF 210
           ERRQ+ L+RKR +Y   VKQYYDTD+DE Y+D YRQIHIDIPRMS    LFQQ  VQEMF
Sbjct: 195 ERRQEALDRKRIDYANLVKQYYDTDKDEVYKDTYRQIHIDIPRMST--PLFQQTTVQEMF 252

Query: 211 ERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEA 270
           ERILFIWAIRHPASGYVQG+NDLVTPF+VVFLQE+LP+GT++E LD+S++ K+ RD +EA
Sbjct: 253 ERILFIWAIRHPASGYVQGMNDLVTPFYVVFLQEYLPIGTNIETLDVSSISKKNRDSLEA 312

Query: 271 DSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRW 330
           DSF CLSKFLDGIQDNYIFAQLGIQ KVNQLK+LIQRID  LH HL+KHG+DYLQFSFRW
Sbjct: 313 DSFWCLSKFLDGIQDNYIFAQLGIQYKVNQLKELIQRIDGTLHGHLMKHGIDYLQFSFRW 372

Query: 331 MNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLML 390
           MNNLLTRE+PLRCSIRLWDTYLAESD FA FQLYVCAAFLLHWRQ+LL E+DFQGLM+ML
Sbjct: 373 MNNLLTRELPLRCSIRLWDTYLAESDCFAIFQLYVCAAFLLHWRQELLEEKDFQGLMIML 432

Query: 391 QNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLSGSKTKR 431
           QNL T NW+D DI +LVAEAY+LK  FADAPNHL+   TKR
Sbjct: 433 QNLQTQNWTDTDISLLVAEAYKLKFTFADAPNHLT---TKR 470

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242004731|ref|XP_002423232.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506211|gb|EEB10494.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|347972069|ref|XP_313822.4| AGAP004522-PA [Anopheles gambiae str. PEST] gi|333469157|gb|EAA09194.4| AGAP004522-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|328718322|ref|XP_003246451.1| PREDICTED: TBC1 domain family member 22B-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357631793|gb|EHJ79262.1| hypothetical protein KGM_15668 [Danaus plexippus] Back     alignment and taxonomy information
>gi|198453453|ref|XP_001359209.2| GA19101 [Drosophila pseudoobscura pseudoobscura] gi|198132363|gb|EAL28354.2| GA19101 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|194744903|ref|XP_001954932.1| GF16495 [Drosophila ananassae] gi|190627969|gb|EDV43493.1| GF16495 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|91092770|ref|XP_973712.1| PREDICTED: similar to AGAP004522-PA [Tribolium castaneum] gi|270014893|gb|EFA11341.1| hypothetical protein TcasGA2_TC010881 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195355584|ref|XP_002044271.1| GM15063 [Drosophila sechellia] gi|194129572|gb|EDW51615.1| GM15063 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195498391|ref|XP_002096503.1| GE25705 [Drosophila yakuba] gi|194182604|gb|EDW96215.1| GE25705 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
FB|FBgn0038855546 CG5745 [Drosophila melanogaste 0.742 0.586 0.704 7e-128
ZFIN|ZDB-GENE-041114-144567 tbc1d22a "TBC1 domain family, 0.547 0.416 0.655 1.4e-122
UNIPROTKB|Q9NU19505 TBC1D22B "TBC1 domain family m 0.735 0.627 0.614 4.5e-117
UNIPROTKB|F1RVS3505 TBC1D22B "Uncharacterized prot 0.735 0.627 0.614 7.3e-117
UNIPROTKB|A5PJP0505 TBC1D22B "TBC1D22B protein" [B 0.735 0.627 0.614 9.3e-117
UNIPROTKB|Q5ZMI3518 TBC1D22A "Uncharacterized prot 0.693 0.577 0.647 3.5e-115
UNIPROTKB|F1PH19490 TBC1D22B "Uncharacterized prot 0.735 0.646 0.614 2.9e-114
UNIPROTKB|E1C291507 TBC1D22B "Uncharacterized prot 0.735 0.625 0.617 3.4e-113
UNIPROTKB|B0QYI1458 TBC1D22A "TBC1 domain family m 0.693 0.652 0.637 1.5e-112
UNIPROTKB|Q8WUA7517 TBC1D22A "TBC1 domain family m 0.693 0.578 0.637 1.5e-112
FB|FBgn0038855 CG5745 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1192 (424.7 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
 Identities = 226/321 (70%), Positives = 258/321 (80%)

Query:   105 IAKFNAXXXXXXXXXXXXRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEY 164
             I KF              + ++WSG+P ++R  +WRLL+ YLP SSERR  VLE KR  Y
Sbjct:   222 IEKFQVVLDSPQLDLVALKKISWSGVPRKMRAVSWRLLSKYLPPSSERRMAVLESKRQGY 281

Query:   165 WVFVKQYYDTD-RDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPA 223
                   Y+  D +DET QD YRQIHID+PRM+P + LFQQ+LVQEMFERILFIWAIRHPA
Sbjct:   282 QDLRHNYFRVDSQDETQQDTYRQIHIDVPRMNPQIPLFQQQLVQEMFERILFIWAIRHPA 341

Query:   224 SGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGI 283
             SGYVQGINDLVTPFF+VFLQE L   TDLE+ D+STLP+E R+IIEADSF CLSKFLD I
Sbjct:   342 SGYVQGINDLVTPFFIVFLQEALTPNTDLEKYDMSTLPEETRNIIEADSFWCLSKFLDCI 401

Query:   284 QDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRC 343
             QDNYIFAQLGIQ+KVNQLKDLIQRID NLH HL  HGVDYLQFSFRWMNNLLTRE+PL C
Sbjct:   402 QDNYIFAQLGIQEKVNQLKDLIQRIDVNLHRHLQAHGVDYLQFSFRWMNNLLTRELPLHC 461

Query:   344 SIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDI 403
             +IRLWDTYLAESD FA F LYVCAAFLLHW+++L+++ DFQGLML+LQNLPT NWSD  I
Sbjct:   462 TIRLWDTYLAESDGFALFHLYVCAAFLLHWKEQLMQQNDFQGLMLLLQNLPTHNWSDRQI 521

Query:   404 GVLVAEAYRLKVAFADAPNHL 424
              VL+AEA+RLK  +ADAP HL
Sbjct:   522 NVLLAEAFRLKFTYADAPKHL 542
GO:0005096 "GTPase activator activity" evidence=ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
ZFIN|ZDB-GENE-041114-144 tbc1d22a "TBC1 domain family, member 22a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NU19 TBC1D22B "TBC1 domain family member 22B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVS3 TBC1D22B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJP0 TBC1D22B "TBC1D22B protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMI3 TBC1D22A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PH19 TBC1D22B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C291 TBC1D22B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B0QYI1 TBC1D22A "TBC1 domain family member 22A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WUA7 TBC1D22A "TBC1 domain family member 22A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9NU19TB22B_HUMANNo assigned EC number0.47920.97440.8316yesN/A
O59737GYP1_SCHPONo assigned EC number0.48370.76560.6420yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-45
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-43
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 5e-37
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  156 bits (396), Expect = 2e-45
 Identities = 71/255 (27%), Positives = 101/255 (39%), Gaps = 43/255 (16%)

Query: 127 WSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQ 186
             G+P  +R   W+LL    P             +  Y   +K+    D     + I  Q
Sbjct: 2   RKGVPPSLRGVVWKLLLNAQP-------MDTSADKDLYSRLLKETAPDD-----KSIVHQ 49

Query: 187 IHIDIPRMSPLMMLFQQK--LVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQE 244
           I  D+ R  P    FQ K    QE   R+L  +A+ +P  GY QG+N L  P  +V   E
Sbjct: 50  IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDE 109

Query: 245 FLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDN-YIFAQLGIQQKVNQLKD 303
                                     D+F CL K ++    N Y+    G+Q  + QL  
Sbjct: 110 -------------------------EDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDR 144

Query: 304 LIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQL 363
           L++  D +L+ HL   G+    ++ RW   L  RE+PL   +R+WD   AE  D   F  
Sbjct: 145 LVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSD---FLF 201

Query: 364 YVCAAFLLHWRQKLL 378
            V  A L   R  LL
Sbjct: 202 RVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
KOG1092|consensus484 100.0
KOG4567|consensus370 100.0
KOG2058|consensus436 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2223|consensus586 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1093|consensus 725 100.0
KOG1091|consensus 625 99.97
KOG2222|consensus 848 99.97
KOG4347|consensus 671 99.97
KOG2224|consensus781 99.97
KOG4436|consensus 948 99.96
KOG2197|consensus488 99.94
KOG1102|consensus397 99.93
KOG2595|consensus395 99.92
KOG2221|consensus267 99.9
KOG4436|consensus 948 99.61
KOG3636|consensus 669 99.6
KOG2801|consensus 559 99.06
KOG1648|consensus813 98.62
PF149611296 BROMI: Broad-minded protein 97.62
KOG1092|consensus484 93.45
KOG2197|consensus 488 83.4
>KOG1092|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.3e-90  Score=664.97  Aligned_cols=416  Identities=55%  Similarity=0.913  Sum_probs=371.9

Q ss_pred             cccccCCCCCCCCCCCCCCCCCC----------CCCCCCccHHHHhhccCcCCCCCCccccCCCCCCchhhhhhhHHHHH
Q psy3959           9 FWKKNSHNVPGRPSPKKSVFSSS----------SQSNANSSFQAYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVI   78 (431)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (431)
                      +|++++.++||+.+||||.++.+          .+....++|++|+.|++||||.++++.+-...+..+.++.+++.++.
T Consensus         1 ~~~~s~~~~~~s~~~~~ga~s~~~d~~~~~~~~~a~~~~~~~~~~~~s~s~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (484)
T KOG1092|consen    1 PSLYSSSTTKGSSLPVYGASSPPRDTSDGNFRAMAKGRVSTFQDYEPSVSDAWDEGDDDELLRSASAAKHVAPSAAGSVS   80 (484)
T ss_pred             CCccccCCCCCCcccCCCCCCCCccccccchhheeccccchhhhcCCCcCcccccCChHHHHHHHHHhhhhcccccchhh
Confidence            46777778899999999977654          22347799999999999999999666432225555566667777777


Q ss_pred             HhcccccCCC-------------------C---CCC------------------CC------C-----------CCChhh
Q psy3959          79 NNHKTKQFET-------------------S---SSS------------------RN------S-----------KVNESE  101 (431)
Q Consensus        79 ~~h~~~~~~~-------------------l---p~~------------------~~------~-----------~~~~~e  101 (431)
                      .+++...+..                   +   ++.                  ..      +           ..+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~q~~da~~~~~~~s~~~st~~~~~~~~s~~~~~s~~~r~~~~~~~~~~~~~r~~~~~~s~~~  160 (484)
T KOG1092|consen   81 RNCSQSTEVNAKGTKYFSQQDEDASIDDPNSSVVSSTPSTSSSTSSSSNSISNQGRSALRNYPGMPQLQRHSSNVESNRI  160 (484)
T ss_pred             hhhhcccCCCccccccccccccccCcccCCCCCCCCCcCcCCcccccCCcccccchhhhccCCCChhhhhhhhhhhHHHH
Confidence            7766654430                   0   000                  00      0           112244


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHccCCCC-chh
Q psy3959         102 SSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRD-ETY  180 (431)
Q Consensus       102 ~~r~~k~~~ll~~~~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~-~~~  180 (431)
                      .+|+.++...+..+.+|.++||++||.|||..+|+.+|++|+||+|++.++++.++++++.+|..++.+++....+ +..
T Consensus       161 ~s~i~~~~~~~~~~~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~  240 (484)
T KOG1092|consen  161 FSRISKFGSILDSPIIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDED  240 (484)
T ss_pred             HhccCcccccCCcccccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCcccc
Confidence            5567778888877889999999999999999999999999999999999999999999999999999999998865 777


Q ss_pred             HHHHHHHHHhcccCCcchhhhcchHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCcccccccCCC
Q psy3959         181 QDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTL  260 (431)
Q Consensus       181 ~~~~~qI~~Dv~Rt~p~~~~f~~~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~~~~~~~~~  260 (431)
                      .++++||..|++||.|..++|+++.+|++++|||++|+++||.+||+||+|++++|||++|+.+|++...++..+|+..+
T Consensus       241 ~d~~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l  320 (484)
T KOG1092|consen  241 QDTWRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLL  320 (484)
T ss_pred             CccccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999987688889998889


Q ss_pred             chhhhhhhHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHHHhccCCC
Q psy3959         261 PKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVP  340 (431)
Q Consensus       261 ~~e~~~~iE~daF~~l~~ll~~~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~tlF~~~lp  340 (431)
                      +.|.++.||+|||||+.+|+++|++||++.+||||.+++.|++|++++|+.||+||+++||++.+|+||||+|||+|++|
T Consensus       321 ~~E~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~p  400 (484)
T KOG1092|consen  321 PAENAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFP  400 (484)
T ss_pred             cHHHHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHhccc
Q psy3959         341 LRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADA  420 (431)
Q Consensus       341 ~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~~A~~L~~~~~~a  420 (431)
                      +.+++||||+|++|+++|++||+|||+|+|+.|+++|+ ++||++++.||||+|+++|+++||+.|+++||+++++|.+|
T Consensus       401 l~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~-e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~da  479 (484)
T KOG1092|consen  401 LRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM-ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSDA  479 (484)
T ss_pred             chhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999 79999999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3959         421 PNHLS  425 (431)
Q Consensus       421 ~~~~~  425 (431)
                      |+|++
T Consensus       480 ~~H~~  484 (484)
T KOG1092|consen  480 PNHLR  484 (484)
T ss_pred             hhccC
Confidence            99985

>KOG4567|consensus Back     alignment and domain information
>KOG2058|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2223|consensus Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG4347|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG3636|consensus Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 1e-118
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 1e-114
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 2e-67
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-65
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 9e-07
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 8e-05
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/301 (64%), Positives = 244/301 (81%), Gaps = 2/301 (0%)
Query: 123 RSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQD 182
           R  +W G+P +VRP  WRLL+GYLP ++ERR+  L+RKR EY+ F++QYYD+  +E +QD
Sbjct: 45  RKCSWPGVPREVRPITWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSRNEEHHQD 104
Query: 183 IYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFL 242
            YRQIHIDIPR +PL+ LFQQ LVQE+FERILFIWAIRHPASGYVQGINDLVTPFFVVFL
Sbjct: 105 TYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFL 164
Query: 243 QEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLK 302
            E+  V  D+E  D++ L ++    IEADSF C+SK LDGIQDNY FAQ GIQ+KV  L+
Sbjct: 165 SEY--VEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYTFAQPGIQKKVKALE 222
Query: 303 DLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQ 362
           +L+ RID  +HNH  ++ V+YLQF+FRWMNNLL RE+PLRC+IRLWDTY +E + F+ F 
Sbjct: 223 ELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFH 282
Query: 363 LYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPN 422
           LYVCAAFL+ WR+++L E DFQGL+++LQNLPT +W + +IG+L+AEAYRLK  FADAPN
Sbjct: 283 LYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIGLLLAEAYRLKYMFADAPN 342
Query: 423 H 423
           H
Sbjct: 343 H 343
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 1e-129
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-111
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 9e-62
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-31
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-29
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 7e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  376 bits (966), Expect = e-129
 Identities = 204/344 (59%), Positives = 258/344 (75%), Gaps = 2/344 (0%)

Query: 81  HKTKQFETSSSSRNSKVNESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWR 140
           H      +   +   + +E E+S++ KF  LL     +LEELR L+WSGIP  VRP  W+
Sbjct: 2   HHHHHHSSGRENLYFQGSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWK 61

Query: 141 LLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMML 200
           LL+GYLP + +RR   L+RK+ EY+ F++ YYD+  DE +QD YRQIHIDIPRMSP  ++
Sbjct: 62  LLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALI 121

Query: 201 FQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTL 260
            Q K V E+FERILFIWAIRHPASGYVQGINDLVTPFFVVF+ E++    +++ +D+S +
Sbjct: 122 LQPK-VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIE-AEEVDTVDVSGV 179

Query: 261 PKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHG 320
           P E    IEAD++ C+SK LDGIQDNY FAQ GIQ KV  L++L+ RID  +H HL +H 
Sbjct: 180 PAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHE 239

Query: 321 VDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRE 380
           V YLQF+FRWMNNLL REVPLRC+IRLWDTY +E D F+ F LYVCAAFL+ WR+++L E
Sbjct: 240 VRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEE 299

Query: 381 RDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHL 424
           +DFQ L+L LQNLPT++W D DI +L+AEAYRLK AFADAPNH 
Sbjct: 300 KDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFADAPNHY 343
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=4.2e-68  Score=530.44  Aligned_cols=330  Identities=62%  Similarity=1.084  Sum_probs=290.7

Q ss_pred             CCCCChhhHHHHHHHHHHhccCCCCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHcc
Q psy3959          94 NSKVNESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYD  173 (431)
Q Consensus        94 ~~~~~~~e~~r~~k~~~ll~~~~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~  173 (431)
                      ++++.++|..|.++|.++++++.+|.++||+++++|||+.+|+.||++|+|++|.+.++|...++++++.|..++++++.
T Consensus        15 ~~~~~~~e~~r~~kw~~~l~~~~~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~   94 (345)
T 2qfz_A           15 YFQGSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYD   94 (345)
T ss_dssp             ---------CHHHHHHHHHHCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCcchhHHHHHHHHHHHcCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44567788899999999999988999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCchhHHHHHHHHHhcccCCcchhhhcchHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCccc
Q psy3959         174 TDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLE  253 (431)
Q Consensus       174 ~~~~~~~~~~~~qI~~Dv~Rt~p~~~~f~~~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~~  253 (431)
                      ...++...+..+||++||+||+|+ ++|+++.+++.|+|||.+|+.+||++|||||||+|++||++++.+++++ +++.+
T Consensus        95 ~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~-~~~~~  172 (345)
T 2qfz_A           95 SRNDEVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIE-AEEVD  172 (345)
T ss_dssp             ------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC------
T ss_pred             CCCccchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcc-ccccc
Confidence            665666678899999999999999 9999999999999999999999999999999999999999999887765 45677


Q ss_pred             ccccCCCchhhhhhhHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHH
Q psy3959         254 QLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNN  333 (431)
Q Consensus       254 ~~~~~~~~~e~~~~iE~daF~~l~~ll~~~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~t  333 (431)
                      ..|+..++.+..+.+|++|||||+++|++++++|.++++|++..+..++.++++++|+||+||.+.|+++..|+++||+|
T Consensus       173 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~  252 (345)
T 2qfz_A          173 TVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNN  252 (345)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCChhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q psy3959         334 LLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRL  413 (431)
Q Consensus       334 lF~~~lp~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~~A~~L  413 (431)
                      +|++++|++.++||||.|+++|.++..|++|+|+|+|..++++||++.|+++++.+|+++|+.+|+..|++.|+++|++|
T Consensus       253 lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l  332 (345)
T 2qfz_A          253 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL  332 (345)
T ss_dssp             TTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred             HHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence            99999999999999999999999877789999999999999999988999999999999999999999999999999999


Q ss_pred             HHHhcccccccc
Q psy3959         414 KVAFADAPNHLS  425 (431)
Q Consensus       414 ~~~~~~a~~~~~  425 (431)
                      +.+|.+||+|++
T Consensus       333 ~~~~~~~~~h~~  344 (345)
T 2qfz_A          333 KFAFADAPNHYK  344 (345)
T ss_dssp             HHHC--------
T ss_pred             HHHHHhhHhhcc
Confidence            999999999995
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 431
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-44
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 3e-17
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 3e-16
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (383), Expect = 1e-44
 Identities = 88/193 (45%), Positives = 125/193 (64%), Gaps = 5/193 (2%)

Query: 100 SESSKIAKF-NALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLE 158
           S   +I+KF N L +  ++N ++LR ++W+GIP   RP  W+LL GYLP +++R++  L+
Sbjct: 2   SIIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQ 61

Query: 159 RKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWA 218
           RKR EY     ++  +D+       + QI IDIPR +P + L+Q K VQ   +RIL++WA
Sbjct: 62  RKRKEYRDS-LKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 120

Query: 219 IRHPASGYVQGINDLVTPFFVVFLQEFLP---VGTDLEQLDLSTLPKEQRDIIEADSFCC 275
           IRHPASGYVQGINDLVTPFF  FL E+LP   +     +   + +  EQ   +EAD+F C
Sbjct: 121 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWC 180

Query: 276 LSKFLDGIQDNYI 288
           L+K L+ I DNYI
Sbjct: 181 LTKLLEQITDNYI 193
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.93
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-37  Score=281.45  Aligned_cols=186  Identities=46%  Similarity=0.868  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHHhccC-CCCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHccCCCCch
Q psy3959         101 ESSKIAKFNALLNLN-LLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDET  179 (431)
Q Consensus       101 e~~r~~k~~~ll~~~-~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~  179 (431)
                      -.+|+.+|.+++... .++.++||+++++|||+.+|+.||+.|+|++|.+.+.|+..+.++++.|..+...+... ....
T Consensus         3 ~~~~i~~~~~~l~~~~~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~   81 (194)
T d1fkma1           3 IIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSD-QHSR   81 (194)
T ss_dssp             HHHHHHHHHHHHSSCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSS-SCST
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhc-cccc
Confidence            357999999999774 58999999999999999999999999999999999999999999999999999887654 3344


Q ss_pred             hHHHHHHHHHhcccCCcchhhhcchHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCcccccc---
Q psy3959         180 YQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLD---  256 (431)
Q Consensus       180 ~~~~~~qI~~Dv~Rt~p~~~~f~~~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~~~~~---  256 (431)
                      +.+..+||++||+||+|++++|+.+.+++.|+|||.+||.+||++|||||||+|+|||+.++..++.. ........   
T Consensus        82 ~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~-~~~~~~~~~~~  160 (194)
T d1fkma1          82 DIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP-PSQIDDVEIKD  160 (194)
T ss_dssp             HHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSC-GGGGGGTTTSC
T ss_pred             chHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhh-hhhhhhhhhcc
Confidence            67788999999999999999999999999999999999999999999999999999999999876543 11112222   


Q ss_pred             -cCCCchhhhhhhHHHHHHHHHHHHhhhhhhhc
Q psy3959         257 -LSTLPKEQRDIIEADSFCCLSKFLDGIQDNYI  288 (431)
Q Consensus       257 -~~~~~~e~~~~iE~daF~~l~~ll~~~~~~f~  288 (431)
                       ........+..+|+||||||+++|++++++|.
T Consensus       161 ~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         161 PSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             GGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence             12334556678899999999999999999985
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure