Psyllid ID: psy3961

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MEKSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPIK
ccccccHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
meksfgivDYAVFILMLVISGAIGIYyrfsggkqktnneylfgnrnqslIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGgigeiwniahrndrleffnlspdpttrhsWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYktaylrpnvnnptsNIFLFCfslspdpttrhsWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYAsyhncdpik
MEKSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPIK
MEKSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYaaifaviivaainvggigEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPIK
****FGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNC****
**KSFGIVDYAVFILMLVISGAIGIYYRFS**********LFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPI*
MEKSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPIK
***SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPIK
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MEKSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
P83740 604 Putative sodium-dependent no N/A 0.722 0.443 0.585 8e-90
Q5BL81 620 Sodium-coupled monocarbox no N/A 0.741 0.443 0.472 4e-70
Q7SYH5 622 Sodium-coupled monocarbox N/A N/A 0.730 0.435 0.472 5e-70
Q8N695 610 Sodium-coupled monocarbox yes N/A 0.730 0.444 0.483 4e-69
Q8BYF6 611 Sodium-coupled monocarbox yes N/A 0.730 0.443 0.48 2e-68
Q5U4D8 634 Sodium-dependent multivit no N/A 0.773 0.452 0.451 4e-68
O70247 634 Sodium-dependent multivit no N/A 0.773 0.452 0.451 3e-67
Q9XT77 636 Sodium-dependent multivit yes N/A 0.735 0.429 0.443 2e-66
Q9Y289 635 Sodium-dependent multivit no N/A 0.730 0.426 0.461 1e-64
Q3ZMH1 610 Sodium-coupled monocarbox no N/A 0.741 0.450 0.418 5e-61
>sp|P83740|SC5A6_DROME Putative sodium-dependent multivitamin transporter OS=Drosophila melanogaster GN=CG32669 PE=2 SV=1 Back     alignment and function desciption
 Score =  330 bits (847), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 208/268 (77%)

Query: 4   SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSA 63
           + G  DY +  ++L+IS AIGIYYRF GGKQ T  EYL  +R+ ++ PVAFSLMASFMSA
Sbjct: 3   TLGAWDYTILAVVLIISVAIGIYYRFVGGKQSTTTEYLLADRSMNVAPVAFSLMASFMSA 62

Query: 64  ITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATR 123
           +T++G+S E   YGT FVVIN+SYVL+TP+ A++ +PVF++L   SVYEYLE RFG ATR
Sbjct: 63  VTILGVSMENYQYGTMFVVINLSYVLSTPVAAYLIIPVFYRLKTASVYEYLELRFGYATR 122

Query: 124 LAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILT 183
           LAASL+F++QMVLYMGI +YAPA+ALEAV GLSQ +SI +VG+VC FY+T+GG+KAV++T
Sbjct: 123 LAASLSFSLQMVLYMGIVVYAPALALEAVTGLSQVFSIVIVGVVCTFYATLGGMKAVLIT 182

Query: 184 DVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIG 243
           D++QS+LM+AA+F+VII A +  G +  IW +A  N R+   N S DPT RH+WFT I+G
Sbjct: 183 DIYQSLLMFAAVFSVIICAWVKAGSLEVIWRVAQENGRINLTNFSVDPTERHTWFTQILG 242

Query: 244 GIFTYCSLYGINQMQVQRYLTMKDYKTA 271
           G  TY ++YG+NQ QVQR + +K    A
Sbjct: 243 GCATYLAIYGVNQTQVQRLMAVKSLSAA 270

Drosophila melanogaster (taxid: 7227)
>sp|Q5BL81|SC5A8_XENTR Sodium-coupled monocarboxylate transporter 1 OS=Xenopus tropicalis GN=slc5a8 PE=2 SV=1 Back     alignment and function description
>sp|Q7SYH5|SC5A8_XENLA Sodium-coupled monocarboxylate transporter 1 OS=Xenopus laevis GN=slc5a8 PE=2 SV=1 Back     alignment and function description
>sp|Q8N695|SC5A8_HUMAN Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYF6|SC5A8_MOUSE Sodium-coupled monocarboxylate transporter 1 OS=Mus musculus GN=Slc5a8 PE=1 SV=1 Back     alignment and function description
>sp|Q5U4D8|SC5A6_MOUSE Sodium-dependent multivitamin transporter OS=Mus musculus GN=Slc5a6 PE=2 SV=2 Back     alignment and function description
>sp|O70247|SC5A6_RAT Sodium-dependent multivitamin transporter OS=Rattus norvegicus GN=Slc5a6 PE=2 SV=1 Back     alignment and function description
>sp|Q9XT77|SC5A6_RABIT Sodium-dependent multivitamin transporter OS=Oryctolagus cuniculus GN=SLC5A6 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y289|SC5A6_HUMAN Sodium-dependent multivitamin transporter OS=Homo sapiens GN=SLC5A6 PE=2 SV=2 Back     alignment and function description
>sp|Q3ZMH1|SC5A8_DANRE Sodium-coupled monocarboxylate transporter 1 OS=Danio rerio GN=slc5a8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
193690733 566 PREDICTED: putative sodium-dependent mul 0.722 0.473 0.708 1e-105
170049652 594 sodium/solute symporter [Culex quinquefa 0.722 0.451 0.675 1e-102
91082287 584 PREDICTED: similar to sodium/solute symp 0.765 0.486 0.631 1e-101
347971436 605 AGAP004199-PA [Anopheles gambiae str. PE 0.730 0.447 0.664 1e-101
157112389 623 sodium/solute symporter [Aedes aegypti] 0.722 0.430 0.671 1e-101
25986565 592 multivitamin transporter [Aedes aegypti] 0.746 0.467 0.653 1e-100
193652385 555 PREDICTED: putative sodium-dependent mul 0.722 0.482 0.608 1e-93
241703281278 sodium-dependent multivitamin transporte 0.727 0.971 0.592 4e-92
332374680 585 unknown [Dendroctonus ponderosae] 0.787 0.499 0.575 5e-92
28573698 587 CG10444 [Drosophila melanogaster] gi|201 0.722 0.456 0.619 1e-91
>gi|193690733|ref|XP_001949204.1| PREDICTED: putative sodium-dependent multivitamin transporter-like isoform 1 [Acyrthosiphon pisum] gi|328711137|ref|XP_003244455.1| PREDICTED: putative sodium-dependent multivitamin transporter-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/268 (70%), Positives = 224/268 (83%)

Query: 4   SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSA 63
           +FGIVDY VF +ML +S +IGIYYRF+GGKQKT  EY+ GN+NQ ++PVAFSLMASFMSA
Sbjct: 2   AFGIVDYIVFGIMLAMSASIGIYYRFTGGKQKTTQEYMLGNKNQGVVPVAFSLMASFMSA 61

Query: 64  ITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATR 123
           ITL G+SAE   +GTQFV INISYVL TPI+A+++LPVFFKLG +SVYEYLEKRFG  TR
Sbjct: 62  ITLFGVSAENYYHGTQFVAINISYVLGTPIIAYVFLPVFFKLGNLSVYEYLEKRFGRWTR 121

Query: 124 LAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILT 183
              S+AF+VQM+LYMGI LYAP++AL A+ GLS   SITLVGLVC+FYSTIGGIKAVI+T
Sbjct: 122 TVTSIAFSVQMILYMGIVLYAPSLALGAITGLSITSSITLVGLVCIFYSTIGGIKAVIIT 181

Query: 184 DVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIG 243
           DVFQS+LM+A+IFAVI VA    GGI +IW IA +  R+EF N + DPT RHSWF+L+IG
Sbjct: 182 DVFQSLLMFASIFAVIGVAMYETGGISQIWKIADKYGRIEFNNFNIDPTERHSWFSLVIG 241

Query: 244 GIFTYCSLYGINQMQVQRYLTMKDYKTA 271
           G+FTY SLY INQ QVQRYLTMKDY TA
Sbjct: 242 GMFTYVSLYAINQTQVQRYLTMKDYNTA 269

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170049652|ref|XP_001857950.1| sodium/solute symporter [Culex quinquefasciatus] gi|167871396|gb|EDS34779.1| sodium/solute symporter [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|91082287|ref|XP_973816.1| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum] gi|270007205|gb|EFA03653.1| hypothetical protein TcasGA2_TC013747 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|347971436|ref|XP_313095.4| AGAP004199-PA [Anopheles gambiae str. PEST] gi|333468668|gb|EAA08654.4| AGAP004199-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157112389|ref|XP_001657511.1| sodium/solute symporter [Aedes aegypti] gi|108878072|gb|EAT42297.1| AAEL006139-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|25986565|gb|AAL38977.1| multivitamin transporter [Aedes aegypti] Back     alignment and taxonomy information
>gi|193652385|ref|XP_001951358.1| PREDICTED: putative sodium-dependent multivitamin transporter-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|241703281|ref|XP_002402957.1| sodium-dependent multivitamin transporter, putative [Ixodes scapularis] gi|215504940|gb|EEC14434.1| sodium-dependent multivitamin transporter, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|332374680|gb|AEE62481.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|28573698|ref|NP_611465.2| CG10444 [Drosophila melanogaster] gi|20152057|gb|AAM11388.1| LD47995p [Drosophila melanogaster] gi|28380707|gb|AAF57489.2| CG10444 [Drosophila melanogaster] gi|220956122|gb|ACL90604.1| CG10444-PA [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
FB|FBgn0034494 587 CG10444 [Drosophila melanogast 0.722 0.456 0.578 2.9e-80
FB|FBgn0052669 604 CG32669 [Drosophila melanogast 0.722 0.443 0.555 1.2e-79
ZFIN|ZDB-GENE-041001-177 625 si:dkey-5g7.3 "si:dkey-5g7.3" 0.735 0.436 0.439 1.4e-64
ZFIN|ZDB-GENE-050913-86 603 slc5a6 "solute carrier family 0.938 0.577 0.378 6e-64
UNIPROTKB|Q8N695 610 SLC5A8 "Sodium-coupled monocar 0.741 0.450 0.454 3e-62
RGD|1564146 611 Slc5a8 "solute carrier family 0.768 0.466 0.438 3.8e-62
MGI|MGI:2384916 611 Slc5a8 "solute carrier family 0.768 0.466 0.442 3.8e-62
UNIPROTKB|E2RI16 612 SLC5A8 "Uncharacterized protei 0.741 0.449 0.447 6.2e-62
UNIPROTKB|F1SRH7 611 SLC5A8 "Uncharacterized protei 0.741 0.450 0.443 6.2e-62
UNIPROTKB|E2R9T1 636 SLC5A6 "Uncharacterized protei 0.770 0.449 0.421 6.2e-62
FB|FBgn0034494 CG10444 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 155/268 (57%), Positives = 200/268 (74%)

Query:     4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSA 63
             +F   D AV I +LVIS  IGIYYR++GGKQKT  EYL  +++ +  PV+FSLMASFMSA
Sbjct:     5 TFDAWDAAVLITILVISALIGIYYRYTGGKQKTTQEYLMADQSMTTFPVSFSLMASFMSA 64

Query:    64 ITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATR 123
             I+LMG+S E   +GT F VINI+YVL+TPI A+ +LPVF+++   SVYEYLE+RFG ATR
Sbjct:    65 ISLMGVSNESYEFGTIFCVINIAYVLSTPIAAYFFLPVFYRMRTTSVYEYLERRFGQATR 124

Query:   124 LAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILT 183
             L+ASLAFTVQMVLYMGIALYAPA+ALEAV G+ +  +I ++GLVC FYST+GG+KAV++T
Sbjct:   125 LSASLAFTVQMVLYMGIALYAPALALEAVTGIHRSMAIVVIGLVCTFYSTLGGLKAVLIT 184

Query:   184 DVFQSILMYXXXXXXXXXXXXXXXXXXEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIG 243
             DVFQS LM+                   IW++A    R+ F   S DPT RH+W++LIIG
Sbjct:   185 DVFQSFLMFAAIYAVIAVSAIKAGGFAAIWDVAVERGRVNFIEFSLDPTVRHTWWSLIIG 244

Query:   244 GIFTYCSLYGINQMQVQRYLTMKDYKTA 271
             G+ TY SLYG+NQ QVQR L++++ K+A
Sbjct:   245 GMVTYLSLYGVNQTQVQRLLSVRNLKSA 272
GO:0008523 "sodium-dependent multivitamin transmembrane transporter activity" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
FB|FBgn0052669 CG32669 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041001-177 si:dkey-5g7.3 "si:dkey-5g7.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-86 slc5a6 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N695 SLC5A8 "Sodium-coupled monocarboxylate transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1564146 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2384916 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RI16 SLC5A8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRH7 SLC5A8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9T1 SLC5A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
cd11492 522 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and 1e-135
cd11504 527 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp 3e-99
cd11519 541 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr 5e-92
cd11505 536 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra 2e-91
cd10326 477 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and 4e-89
cd11503 535 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N 5e-73
cd11520 529 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr 3e-71
cd11495 477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 5e-58
cd11494 481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 2e-55
cd11493 479 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subg 1e-46
TIGR00813407 TIGR00813, sss, transporter, SSS family 2e-42
cd10322455 cd10322, SLC5sbd, Solute carrier 5 family, sodium/ 1e-37
COG0591 493 COG0591, PutP, Na+/proline symporter [Amino acid t 1e-34
cd11492 522 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and 4e-31
cd11478 495 cd11478, SLC5sbd_u2, Uncharacterized bacterial sol 5e-28
cd11475 464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 8e-28
cd11477 495 cd11477, SLC5sbd_u1, Uncharacterized bacterial sol 5e-27
cd10328 472 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfam 2e-20
PRK10484 523 PRK10484, PRK10484, putative transporter; Provisio 7e-19
pfam00474406 pfam00474, SSF, Sodium:solute symporter family 1e-18
cd11504 527 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp 2e-18
cd10325 523 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na 3e-18
cd10327 472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 3e-18
COG4146 571 COG4146, COG4146, Predicted symporter [General fun 7e-18
cd10329 564 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotrans 2e-16
TIGR02121 487 TIGR02121, Na_Pro_sym, sodium/proline symporter 4e-16
cd11519 541 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr 5e-16
cd11505 536 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra 1e-15
cd11479 454 cd11479, SLC5sbd_u3, Uncharacterized bacterial sol 6e-15
cd11474 464 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent c 6e-15
COG4145 473 COG4145, PanF, Na+/panthothenate symporter [Coenzy 7e-15
cd11486 635 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporte 3e-14
cd11491 600 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransp 6e-14
COG4147 529 COG4147, DhlC, Predicted symporter [General functi 2e-13
cd11476 493 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotran 5e-13
cd11489 604 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporte 3e-12
cd11488 605 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporte 3e-12
cd11503 535 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N 2e-11
cd11520 529 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr 2e-11
cd11490 602 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotra 2e-11
PRK09442 483 PRK09442, panF, sodium/panthothenate symporter; Pr 2e-11
TIGR02119471 TIGR02119, panF, sodium/pantothenate symporter 1e-10
cd11480 484 cd11480, SLC5sbd_u4, Uncharacterized bacterial sol 7e-10
cd11487 583 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporte 3e-09
PRK15419 502 PRK15419, PRK15419, proline:sodium symporter PutP; 4e-08
TIGR02711 549 TIGR02711, symport_actP, cation/acetate symporter 4e-06
cd11495 477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 6e-06
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information 
 Score =  395 bits (1017), Expect = e-135
 Identities = 150/264 (56%), Positives = 197/264 (74%)

Query: 8   VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
           VDY VF  ML+IS  IGIY+ F GGKQKT  EYL G R+ S+ PVA SL+ASF+SAITL+
Sbjct: 1   VDYVVFAAMLLISAGIGIYFGFFGGKQKTTEEYLLGGRSMSVFPVALSLLASFISAITLL 60

Query: 68  GLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAAS 127
           G  AE+  YGTQ+ +I ISY++  PI A+I+LPVF+ L   S YEYLE RF  + RL AS
Sbjct: 61  GTPAEVYLYGTQYWLIVISYLIVGPITAYIFLPVFYNLQLTSTYEYLELRFNRSVRLLAS 120

Query: 128 LAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQ 187
           L F +QM+LY+GI +YAPA+AL  V G++ + S+ +VG+VC FY+T+GG+KAV+ TDVFQ
Sbjct: 121 LLFILQMLLYLGIVIYAPALALNQVTGINLWISVLIVGIVCTFYTTLGGLKAVVWTDVFQ 180

Query: 188 SILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFT 247
            ++M+  + AVII   I+VGG+ E+W IA    RLEFFN  PDPT RH++++L+IGG FT
Sbjct: 181 VVVMFGGVLAVIIKGTIDVGGLSEVWEIAEEGGRLEFFNFDPDPTVRHTFWSLVIGGTFT 240

Query: 248 YCSLYGINQMQVQRYLTMKDYKTA 271
           + SLYG+NQ QVQRYL++   K A
Sbjct: 241 WLSLYGVNQAQVQRYLSLPSLKQA 264

NIS (encoded by the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and -2. SMCT1(encoded by the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (encoded by the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 522
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia coli YidK-like; solute binding domain Back     alignment and domain information
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family Back     alignment and domain information
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter Back     alignment and domain information
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute binding domain Back     alignment and domain information
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional Back     alignment and domain information
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter Back     alignment and domain information
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional Back     alignment and domain information
>gnl|CDD|131758 TIGR02711, symport_actP, cation/acetate symporter ActP Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
PRK09395 551 actP acetate permease; Provisional 100.0
PRK12488 549 acetate permease; Provisional 100.0
PRK09442 483 panF sodium/panthothenate symporter; Provisional 100.0
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 100.0
KOG2349|consensus 585 100.0
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 100.0
PRK10484 523 putative transporter; Provisional 100.0
PRK15419 502 proline:sodium symporter PutP; Provisional 100.0
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 100.0
TIGR00813 407 sss transporter, SSS family. have different number 100.0
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 100.0
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 100.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 100.0
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 100.0
COG4147 529 DhlC Predicted symporter [General function predict 100.0
COG4146 571 Predicted symporter [General function prediction o 99.97
KOG3761|consensus 591 99.9
KOG2348|consensus 667 99.76
PF03845320 Spore_permease: Spore germination protein; InterPr 98.45
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.44
PRK11017404 codB cytosine permease; Provisional 98.07
TIGR00814397 stp serine transporter. The HAAAP family includes 98.04
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.01
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.01
TIGR00837381 araaP aromatic amino acid transport protein. aroma 97.9
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.85
PRK00701439 manganese transport protein MntH; Reviewed 97.84
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 97.82
TIGR00909429 2A0306 amino acid transporter. 97.73
PRK10249 458 phenylalanine transporter; Provisional 97.68
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.65
COG1457442 CodB Purine-cytosine permease and related proteins 97.58
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.58
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.54
COG3949349 Uncharacterized membrane protein [Function unknown 97.54
PRK15132403 tyrosine transporter TyrP; Provisional 97.51
PRK10580 457 proY putative proline-specific permease; Provision 97.49
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 97.48
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 97.48
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 97.48
PRK10483414 tryptophan permease; Provisional 97.38
PRK11387 471 S-methylmethionine transporter; Provisional 97.37
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 97.36
PRK11375 484 allantoin permease; Provisional 97.33
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 97.33
PRK10238 456 aromatic amino acid transporter; Provisional 97.32
PRK10655 438 potE putrescine transporter; Provisional 97.31
PRK10746 461 putative transport protein YifK; Provisional 97.24
PRK10484 523 putative transporter; Provisional 97.18
PRK09664415 tryptophan permease TnaB; Provisional 97.18
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 97.16
PRK10836 489 lysine transporter; Provisional 97.12
TIGR00913 478 2A0310 amino acid permease (yeast). 97.1
PRK15049 499 L-asparagine permease; Provisional 97.09
PRK11021410 putative transporter; Provisional 97.06
TIGR00906 557 2A0303 cationic amino acid transport permease. 97.06
PRK10644 445 arginine:agmatin antiporter; Provisional 96.96
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.92
COG0814415 SdaC Amino acid permeases [Amino acid transport an 96.89
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 96.79
TIGR00813407 sss transporter, SSS family. have different number 96.72
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 96.7
PRK10197 446 gamma-aminobutyrate transporter; Provisional 96.43
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 96.4
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 96.39
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.36
PRK11357 445 frlA putative fructoselysine transporter; Provisio 96.12
KOG2349|consensus 585 95.95
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 95.9
PRK09928 679 choline transport protein BetT; Provisional 95.86
PRK13629443 threonine/serine transporter TdcC; Provisional 95.8
COG0531 466 PotE Amino acid transporters [Amino acid transport 95.64
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 95.61
TIGR00911 501 2A0308 L-type amino acid transporter. 95.61
PRK12488 549 acetate permease; Provisional 95.49
PRK09442 483 panF sodium/panthothenate symporter; Provisional 95.4
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 95.21
PRK09395 551 actP acetate permease; Provisional 95.03
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 94.88
PTZ00206467 amino acid transporter; Provisional 94.74
PF00474 406 SSF: Sodium:solute symporter family; InterPro: IPR 94.25
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 93.92
COG1292537 BetT Choline-glycine betaine transporter [Cell env 93.76
KOG1303|consensus437 93.23
COG1966 575 CstA Carbon starvation protein, predicted membrane 92.76
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 92.66
PRK09950506 putative transporter; Provisional 91.15
TIGR00842453 bcct choline/carnitine/betaine transport. properti 90.8
PRK15015 701 carbon starvation protein A; Provisional 89.99
COG0833 541 LysP Amino acid transporters [Amino acid transport 89.96
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 89.93
TIGR00930 953 2a30 K-Cl cotransporter. 89.66
PRK15419 502 proline:sodium symporter PutP; Provisional 89.65
COG4147 529 DhlC Predicted symporter [General function predict 88.87
PRK15238 496 inner membrane transporter YjeM; Provisional 88.77
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 88.18
COG4146 571 Predicted symporter [General function prediction o 87.85
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 87.5
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 87.39
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 84.48
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 81.78
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 80.17
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-43  Score=361.52  Aligned_cols=293  Identities=15%  Similarity=0.257  Sum_probs=245.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH
Q psy3961           4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI   83 (371)
Q Consensus         4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~   83 (371)
                      .+|+.++.++++|+++++++|+|.   +||+||.|||++|||++|+|..++++.||++|+.+++|.+|.+|++|+++.|+
T Consensus        31 ~~~~~~~~i~~~y~~~~l~iG~~~---~r~~~s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~  107 (551)
T PRK09395         31 PTNWQAIIMFLIFVVFTLGITYWA---AKRTRSASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY  107 (551)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHh---hcccCCHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH
Confidence            467889999999999999999986   45678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy3961          84 NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS-ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSIT  162 (371)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~-~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~  162 (371)
                      .++..++.++..++++||+||.+..|++|++++|||+ ..|.+.+++.++..+.|+..|+.+.+.+++.++|+|++.+++
T Consensus       108 ~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~~~~il  187 (551)
T PRK09395        108 SIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVV  187 (551)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999889888888889999999999999999999995 599999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHhhhhCCccccccCCCCCcccccchhhH
Q psy3961         163 LVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLI  241 (371)
Q Consensus       163 i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (371)
                      +.++++++||..||+|+++|||.+|+++++++.+++.+.++.+.| |++++.+.+.+.++......+++.... .++.. 
T Consensus       188 i~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  265 (551)
T PRK09395        188 LVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMKHVGFSFENLFSEAVAVHPKGLAIMGPGGLVK-DPISA-  265 (551)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCcccc-chHHH-
Confidence            999999999999999999999999999999999888887778876 798888876554321110111111100 01110 


Q ss_pred             HhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchH
Q psy3961         242 IGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQM  321 (371)
Q Consensus       242 ~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~  321 (371)
                      +...                                                               +....+ ....|+
T Consensus       266 ~~~~---------------------------------------------------------------~~~~~g-~~~~p~  281 (551)
T PRK09395        266 LSLG---------------------------------------------------------------LALMFG-TAGLPH  281 (551)
T ss_pred             HHHH---------------------------------------------------------------HHHHHH-hhcccH
Confidence            0000                                                               001122 223677


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3961         322 QVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYH  365 (371)
Q Consensus       322 ~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~  365 (371)
                      .+||++++||+|++||+.+++..+...+.+...++|+.++.+++
T Consensus       282 ~~qR~~aaks~k~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~~  325 (551)
T PRK09395        282 ILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAIVLVG  325 (551)
T ss_pred             HHHhhhccCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999988888788888999999999885

>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG3761|consensus Back     alignment and domain information
>KOG2348|consensus Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
2xq2_A 593 Structure Of The K294a Mutant Of Vsglt Length = 593 4e-14
2xq2_B 593 Structure Of The K294a Mutant Of Vsglt Length = 593 2e-09
3dh4_A 530 Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOU 2e-09
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt Length = 593 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
Query: 1   MEKSFGIVDYAVFILMLVISGAIGIYY-RFSGGKQKTNNEYLFGNRNQSLIPVAFSLMAS 59
           +E     +D  VF + + I   +G++  R   G QK+  +Y    ++     V  SL+A+
Sbjct: 4   IEHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAA 63
Query: 60  FMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG 119
            +SA   +G+S    + G           +   IV   +LP+F + G  ++ E++EKRF 
Sbjct: 64  NISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFN 123
Query: 120 SATRLAASLA-FTVQMVLYMGI--ALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGG 176
              +L   LA F + + +++ +   LY   +ALE ++G+   YSI  + L  L YS  GG
Sbjct: 124 K--KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGG 181
Query: 177 IKAVILTDVFQ 187
           + AV+ TDV Q
Sbjct: 182 LSAVVWTDVIQ 192
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt Length = 593 Back     alignment and structure
>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND GALACTOSE FROM Vibrio Parahaemolyticus Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 9e-66
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 1e-50
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
 Score =  217 bits (555), Expect = 9e-66
 Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 9/300 (3%)

Query: 1   MEKSFGIVDYAVFILMLVISGAIGIY-YRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMAS 59
           +E     +D  VF + + I   +G++  R   G QK+  +Y    ++     V  SL+A+
Sbjct: 4   IEHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAA 63

Query: 60  FMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG 119
            +SA   +G+S    + G           +   IV   +LP+F + G  ++ E++EKRF 
Sbjct: 64  NISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFN 123

Query: 120 SATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIK 178
              +   ++ +    + + +   LY   +ALE ++G+   YSI  + L  L YS  GG+ 
Sbjct: 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLS 183

Query: 179 AVILTDVFQSILMYAAIFAVIIVAAINVGG-------IGEIWNIAHRNDRLEFFNLSPDP 231
           AV+ TDV Q   +    F    +A   +GG       + ++ + A  +  +     +P  
Sbjct: 184 AVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQY 243

Query: 232 TTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSL 291
                   LI G        +G NQ  +QR L  K    A          + I  F   L
Sbjct: 244 MNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVL 303
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 100.0
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 100.0
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.75
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.09
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 97.77
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.57
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 95.78
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 94.99
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 93.24
4ain_A539 Glycine betaine transporter BETP; membrane protein 93.03
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
Probab=100.00  E-value=9e-44  Score=364.48  Aligned_cols=301  Identities=23%  Similarity=0.383  Sum_probs=229.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhcCCc-ccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH
Q psy3961           2 EKSFGIVDYAVFILMLVISGAIGIYYRFSGGK-QKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF   80 (371)
Q Consensus         2 ~~~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~-~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~   80 (371)
                      +++|+++|++++++|+++++++|+|.+|++|+ ++|.|||++|||++|++..++|+.||++|+++++|.+|.+|++|+++
T Consensus         5 ~~~~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~   84 (593)
T 2xq2_A            5 EHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI   84 (593)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGG
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHH
Confidence            35799999999999999999999987432222 35789999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhHH
Q psy3961          81 VVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFY  159 (371)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii-~~~~~~~~q~~~~~~~l~~~~gi~~~~  159 (371)
                      .++.+++.++.++.+++++|++||.|..|++||+|+|||++.|.+.+++.++ ..+.+++.|+++.+.+++.++|+|++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~~~  164 (593)
T 2xq2_A           85 ASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMY  164 (593)
T ss_dssp             GHHHHHHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence            8888888888888888999999999999999999999999999999888775 456789999999999999999999999


Q ss_pred             HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhh---hhCCccccccCCCCCccccc
Q psy3961         160 SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIA---HRNDRLEFFNLSPDPTTRHS  236 (371)
Q Consensus       160 ~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~---~~~~~~~~~~~~~~~~~~~~  236 (371)
                      ++++.++++++||..||+|+++|||.+|+++++++.+++.+.++.+.||++++.+..   .+..+ +.++...++.+  +
T Consensus       165 ~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~  241 (593)
T 2xq2_A          165 SILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAP-GHFEMILDQSN--P  241 (593)
T ss_dssp             HHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCG-GGSCSSCCSSS--G
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhCh-hhcccccCCCC--c
Confidence            999999999999999999999999999999999999999888888888766554422   21111 11111100000  0


Q ss_pred             chhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHH-HHHHHHHH
Q psy3961         237 WFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIG-GIFTYCSL  315 (371)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  315 (371)
                      .+.                                                          +..++..++| ..+....+
T Consensus       242 ~~~----------------------------------------------------------~~~~~~~~~g~~~~~~~~~  263 (593)
T 2xq2_A          242 QYM----------------------------------------------------------NLPGIAVLIGGLWVANLYY  263 (593)
T ss_dssp             GGG----------------------------------------------------------TSCTTHHHHSTHHHHHHHH
T ss_pred             ccc----------------------------------------------------------cchHHHHHHHHHHHHHHHh
Confidence            000                                                          0012233332 22345667


Q ss_pred             hccchHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961         316 YGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYAS  363 (371)
Q Consensus       316 ~~~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  363 (371)
                      ++.||..+||++++||+|++||+.++++....++.+...++|+.+++.
T Consensus       264 ~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~  311 (593)
T 2xq2_A          264 WGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVI  311 (593)
T ss_dssp             HTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHH
T ss_pred             hcCChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999988
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00