Psyllid ID: psy3973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MYYVMRKYCNRSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARRKHNGPYKEPEGAVGENAANDKREPGMSCCGVGRQTETKEKYIRSRIVNIGT
Secondary Structure (PSIPRED)
cEEEHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccHHEEEccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccHHHHHHHHccccccccHHccccccccccccccccccccccccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
myyvmrkycnrskfsksADQELETAELslshcqplysystnrtisdrrggqLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFgvvggpvlGVFTLGMTVTFANQQGALAGIVSGLLFCSlvgfggpkpapkklpstiegcpnlvpSLSSILRldnsvdnnfidedattirytdmsssqdqYFYLYRISYMYYIVLGFCVTMLVGAIVSrffdtpsydvnlltpWVAARArrkhngpykepegavgenaandkrepgmsccgvgrqtetKEKYIRSRIVNIGT
Flexible Loop (DISEMBL)
myyvmrkycnrskfsksADQELETAELSLSHCQPLYSYStnrtisdrrgGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDattirytdmsssqDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARRKhngpykepegavgenaandkrepgmsccgvgrqtetkekyirsrivnigt
Low Complexity Region (SEG)
MYYVMRKYCNRSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFgvvggpvlgvFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARRKHNGPYKEPEGAVGENAANDKREPGMSCCGVGRQTETKEKYIRSRIVNIGT
Disordered region (IsUnstruct)
*******Y********************LSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGG**********TIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAAR******************************************************
Disordered Region (DISOPRED)
MYYVMR*YCNRSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARAR**********************************************IV*I**
Disordered Region (DISEMBL)
MYYVMRKYCNRSKF************LSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARRKHNGPYKEPEGAVGENAANDKREPGMSCCGVGRQTETKEKYIRSRIVNIGT
Disordered Region (DISPRO)
MYYVMRKYCNRSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLD**VDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARRK***********************GMSCCGVGRQTETKEKYIRSRIVN***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYYVMRKYCNRSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARRKHNGPYKEPEGAVGENAANDKREPGMSCCGVGRQTETKEKYIRSRIVNIGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
P83740	604	Putative sodium-dependent	yes	N/A	0.733	0.346	0.348	4e-35
Q8N695	610	Sodium-coupled monocarbox	yes	N/A	0.529	0.247	0.327	1e-18
Q8BYF6	611	Sodium-coupled monocarbox	yes	N/A	0.568	0.265	0.331	4e-18
Q3ZMH1	610	Sodium-coupled monocarbox	no	N/A	0.554	0.259	0.327	9e-18
O70247	634	Sodium-dependent multivit	no	N/A	0.540	0.242	0.344	1e-17
Q7SYH5	622	Sodium-coupled monocarbox	N/A	N/A	0.568	0.260	0.331	1e-17
Q9XT77	636	Sodium-dependent multivit	yes	N/A	0.550	0.246	0.346	8e-17
Q99PN0	618	Sodium/iodide cotransport	no	N/A	0.554	0.255	0.344	1e-16
Q5BL81	620	Sodium-coupled monocarbox	no	N/A	0.357	0.164	0.420	3e-16
Q63008	618	Sodium/iodide cotransport	no	N/A	0.543	0.250	0.359	6e-16

>sp|P83740|SC5A6_DROME Putative sodium-dependent multivitamin transporter OS=Drosophila melanogaster GN=CG32669 PE=2 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 38/247 (15%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +PL S    RT++DR+    SK+L+  +G +C+ +A++A  +G +LQA+L+IFG++GG
Sbjct: 362 YLKPLVSCCAKRTLTDRQTLWYSKLLSLFFGALCIGMAFMAGSIGGLLQAALSIFGIIGG 421

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LG+FTLGM VT AN++GA+ G++  L FC  +GFG PKP    L  +  GCP      
Sbjct: 422 PLLGLFTLGMYVTKANEKGAIGGLLISLAFCFWIGFGQPKPPLVSLDMSTAGCP------ 475

Query: 151 SSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIV 210
                    VD +F  +    ++     + ++ YFYLYRISYM+Y  LGF +T   G ++
Sbjct: 476 ---------VDRSFARD--IFLKTVIAVAEEEHYFYLYRISYMWYAALGFLITFFGGWLL 524

Query: 211 SRFFDTPSYDVN---------------LLTPWVAARARRKH------NGPYKEPEGAVGE 249
           S  F    +D N               L  P +A R +R+        G   E  G   E
Sbjct: 525 SWLFALLKWDNNRRIYQDADCTLIKHDLFVPPIAKRLQRRQMPLLVVTGTSSEIGGITTE 584

Query: 250 NAANDKR 256
           +A    R
Sbjct: 585 SATAPPR 591

Drosophila melanogaster (taxid: 7227)

>sp|Q8N695|SC5A8_HUMAN Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 35/186 (18%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           R++S+R    +S+ ++ +YG +C+ +A LA  +G++LQA+L++FG+VGGP++G+F LG+ 
Sbjct: 374 RSLSERSLSWISQGMSVVYGALCIGMAALASLMGALLQAALSVFGMVGGPLMGLFALGIL 433

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK---LPSTIEGC------PNL---- 146
           V FAN  GAL G+++G      VG G     P P++   L   I+GC       NL    
Sbjct: 434 VPFANSIGALVGLMAGFAISLWVGIGAQIYPPLPERTLPLHLDIQGCNSTYNETNLMTTT 493

Query: 147 -VPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTML 205
            +P  +S+ ++ N      +D                     Y +SY+Y+  +G  VT+L
Sbjct: 494 EMPFTTSVFQIYNVQRTPLMDN-------------------WYSLSYLYFSTVGTLVTLL 534

Query: 206 VGAIVS 211
           VG +VS
Sbjct: 535 VGILVS 540

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane. May be responsible for the absorption of D-lactate and monocarboxylate drugs from the intestinal tract. Acts as a tumor suppressor, suppressing colony formation in colon cancer, prostate cancer and glioma cell lines. May play a critical role in the entry of L-lactate and ketone bodies into neurons by a process driven by an electrochemical Na(+) gradient and hence contribute to the maintenance of the energy status and function of neurons.

Homo sapiens (taxid: 9606)

>sp|Q8BYF6|SC5A8_MOUSE Sodium-coupled monocarboxylate transporter 1 OS=Mus musculus GN=Slc5a8 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 99/175 (56%), Gaps = 13/175 (7%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           +++S++    +S+ ++ +YG +C+ +A LA  +G++LQA+L+IFG+VGGP+LG+F+LG+ 
Sbjct: 374 KSLSEKSLSWISQGMSVLYGALCIGMAALASLMGALLQAALSIFGMVGGPLLGLFSLGIL 433

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK---LPSTIEGCPNLVPSLSSILRL 156
           V FAN  GAL G+++G      VG G     P P++   LP    GC N+  + S  +  
Sbjct: 434 VPFANSIGALTGLLAGFAISLWVGIGAQLYPPLPERTLPLPLETYGC-NITHNGSDWM-- 490

Query: 157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
             S         A  I   + +   D +   Y +SY+Y+  +G   T+ VG ++S
Sbjct: 491 --STTEMPFSTSAFQIHNAERTPLMDNW---YSLSYLYFSTIGTLTTLFVGILIS 540

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane. May be responsible for the absorption of D-lactate and monocarboxylate drugs from the intestinal tract. May play a critical role in the entry of L-lactate and ketone bodies into neurons by a process driven by an electrochemical Na(+) gradient and hence contribute to the maintenance of the energy status and function of neurons.

Mus musculus (taxid: 10090)

>sp|Q3ZMH1|SC5A8_DANRE Sodium-coupled monocarboxylate transporter 1 OS=Danio rerio GN=slc5a8 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 16/174 (9%)

Query: 43  TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV 102
           ++++R+   ++  ++  YG VC+ +A +A  +G++LQA+L+IFG++ GP+LG++ LGM  
Sbjct: 376 SLTERQLSWINMGMSVFYGAVCIGMAGVASMMGNILQAALSIFGMISGPLLGLYMLGMFF 435

Query: 103 TFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK---LPSTIEGCPNLVPSLSSILRLD 157
             AN  G LAG+ SGL     VG G     P P+K   LP ++EGC  L           
Sbjct: 436 RCANSTGGLAGLASGLAITLWVGIGAQLYPPLPEKTLRLPLSVEGCVAL----------- 484

Query: 158 NSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
           N+ +   +   +T ++ T            Y +SY+Y+  +G  VTM++  IVS
Sbjct: 485 NTSETTTMTPFSTVLQTTTPQPRPALADNWYSLSYLYFSPVGIVVTMIIALIVS 538

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.

Danio rerio (taxid: 7955)

>sp|O70247|SC5A6_RAT Sodium-dependent multivitamin transporter OS=Rattus norvegicus GN=Slc5a6 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 26/180 (14%)

Query: 44  ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
           +++ R   LS+ L F YGLVCL +AY++ +LGSVLQA+L+IFG+VGGP+LG+F LGM   
Sbjct: 389 LTETRAIMLSRSLAFAYGLVCLGMAYVSSHLGSVLQAALSIFGMVGGPLLGLFCLGMFFP 448

Query: 104 FANQQGALAGIVSGLLFCSLVGFGG--PKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVD 161
            AN  GA+ G+++GL     +G G    + +       + G  + +PS            
Sbjct: 449 CANPLGAIVGLLTGLTMAFWIGIGSIVSRMSSAAASPPLNGSSSFLPS------------ 496

Query: 162 NNFIDEDATTIRYTDMSSSQD-QYFYLYRISYMYY--------IVLGFCVTMLVGAIVSR 212
            N      TT+  + +S     Q F  Y +SY++Y        I +G  V++L G +  R
Sbjct: 497 -NLTVATVTTLMPSTLSKPTGLQQF--YSLSYLWYSAHNSTTVIAVGLIVSLLTGGMRGR 553

Transports pantothenate, biotin and lipoate in the presence of sodium.

Rattus norvegicus (taxid: 10116)

>sp|Q7SYH5|SC5A8_XENLA Sodium-coupled monocarboxylate transporter 1 OS=Xenopus laevis GN=slc5a8 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 13/175 (7%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           R++S+++   +SK  + +YG +C+ +A +A  +G +LQA+L+IFG+VGGP+LG+F+LG+ 
Sbjct: 374 RSLSEKKMSWISKGTSLLYGAICIGMAGIASLMGGLLQAALSIFGMVGGPLLGLFSLGIL 433

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGGPKPA-----PKKLPSTIEGCPNLVPSLSSILRL 156
             F N  GA+ G++SG      VG G    A         P ++EGC        +   +
Sbjct: 434 FPFVNSLGAVIGLLSGFAISLWVGIGSQIYAPSPSSSLPKPLSLEGC--------NFTSI 485

Query: 157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
           +++  +  +    T I  T +SS  +     Y +SY+Y+  +G  V +LVG IVS
Sbjct: 486 ESNWTSTVMPMMTTLIPETQVSSRPELADSWYSLSYLYFSTIGTIVAVLVGVIVS 540

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.

Xenopus laevis (taxid: 8355)

>sp|Q9XT77|SC5A6_RABIT Sodium-dependent multivitamin transporter OS=Oryctolagus cuniculus GN=SLC5A6 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 19/176 (10%)

Query: 45  SDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTF 104
           S+ +   LS+ L F YGL+CL +AY++  +G VLQA+++IFG+VGGP+LG+F LGM    
Sbjct: 391 SEAQAIMLSRSLAFGYGLLCLGMAYISSQMGPVLQAAISIFGMVGGPLLGLFCLGMFFPC 450

Query: 105 ANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNF 164
           AN  GA+ G+++GL+    +G G        + S   G     P+ SS      S+ +N 
Sbjct: 451 ANPPGAIVGLLAGLIMAFWIGIG------SIVTSMGSGLAPSPPNGSSF-----SLPSNL 499

Query: 165 IDEDATTIRYTDMSSSQDQYFYLYRISYMYY--------IVLGFCVTMLVGAIVSR 212
                TT+  +   S       LY +SY++Y        IV+G  V++L G +  R
Sbjct: 500 TIATVTTLMPSTSLSKPTGLQRLYSLSYLWYSAHNSTTVIVVGLIVSLLTGGMRGR 555

Transports pantothenate, biotin and lipoate in the presence of sodium.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q99PN0|SC5A5_MOUSE Sodium/iodide cotransporter OS=Mus musculus GN=Slc5a5 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 19/177 (10%)

Query: 43  TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGS-VLQASLTIFGVVGGPVLGVFTLGMT 101
           +++ R+   +SK L+FIYG  CL +A L+  LG  VLQ S T+ GV+ GP+LG FTLGM 
Sbjct: 377 SLAPRKLVFISKGLSFIYGSTCLTVAALSSLLGGGVLQGSFTVMGVISGPLLGAFTLGML 436

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKK-----LPSTIEGCPN--LVPSLSSIL 154
           +   N  G L+G+ +GL     V  G     P +     LP++  GC N  ++PS     
Sbjct: 437 LPACNTPGVLSGLTAGLAVSLWVAVGATLYPPGEQTMGVLPTSAAGCTNASVLPSPPGAA 496

Query: 155 RLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
                + ++ +D        T            Y +SY+YY  LG   TML GA++S
Sbjct: 497 NTSRGIPSSGMDSGRPAFADT-----------FYAVSYLYYGALGTLTTMLCGALIS 542

Mediates iodide uptake in the thyroid gland.

Mus musculus (taxid: 10090)

>sp|Q5BL81|SC5A8_XENTR Sodium-coupled monocarboxylate transporter 1 OS=Xenopus tropicalis GN=slc5a8 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           R++S+ +   +SK  + IYG +C+ +A LA  +G +LQA+L+IFG+VGGP+LG+F LG+ 
Sbjct: 374 RSLSETKMSWISKGTSLIYGAICIAMAGLASLMGGLLQAALSIFGMVGGPLLGLFALGII 433

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPS--TIEGC 143
             F N  GA+ G++SG      VG G    P  A   LP   ++EGC
Sbjct: 434 FPFVNSLGAVIGLLSGFAISLWVGIGSQIYPPTASSSLPKPLSLEGC 480

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.

Xenopus tropicalis (taxid: 8364)

>sp|Q63008|SC5A5_RAT Sodium/iodide cotransporter OS=Rattus norvegicus GN=Slc5a5 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 23/178 (12%)

Query: 44  ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGS-VLQASLTIFGVVGGPVLGVFTLGMTV 102
           ++ R+   +SK L+FIYG  CL +A L+  LG  VLQ S T+ GV+ GP+LG FTLGM +
Sbjct: 378 LAPRKLVFISKGLSFIYGSACLTVAALSSLLGGGVLQGSFTVMGVISGPLLGAFTLGMLL 437

Query: 103 TFANQQGALAGIVSGLLFCSLVGFGGPKPAPKK-----LPSTIEGCPN----LVPSLSSI 153
              N  G L+G+ +GL     V  G     P +     LP++  GC N    L P  ++ 
Sbjct: 438 PACNTPGVLSGLAAGLAVSLWVAVGATLYPPGEQTMGVLPTSAAGCTNDSVLLGPPGAT- 496

Query: 154 LRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
               N + ++ +D        T   +  D +   Y ISY+YY  LG   TML GA++S
Sbjct: 497 -NASNGIPSSGMD--------TGRPALADTF---YAISYLYYGALGTLTTMLCGALIS 542

Mediates iodide uptake in the thyroid gland.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
193652385	555	PREDICTED: putative sodium-dependent mul	0.642	0.329	0.455	1e-39
332018424	674	Putative sodium-dependent multivitamin t	0.726	0.307	0.394	3e-35
193690733	566	PREDICTED: putative sodium-dependent mul	0.610	0.307	0.441	4e-35
383851180	1205	PREDICTED: uncharacterized protein LOC10	0.785	0.185	0.372	6e-35
307207964	693	Putative sodium-dependent multivitamin t	0.719	0.295	0.422	3e-34
321467745	647	hypothetical protein DAPPUDRAFT_320205 [	0.589	0.259	0.454	5e-34
24641117	604	CG32669 [Drosophila melanogaster] gi|471	0.733	0.346	0.348	2e-33
307213713	599	Putative sodium-dependent multivitamin t	0.680	0.323	0.408	3e-33
307177539	1217	Putative sodium-dependent multivitamin t	0.624	0.146	0.396	3e-33
194762736	607	GF20262 [Drosophila ananassae] gi|190629	0.621	0.291	0.414	1e-32

>gi|193652385|ref|XP_001951358.1| PREDICTED: putative sodium-dependent multivitamin transporter-like [Acyrthosiphon pisum]

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 121/200 (60%), Gaps = 17/200 (8%)

Query: 41  NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGM 100
            + ISD++   L K+L  +YG VC+ +++LAKY+GSVLQ +LTIFGV+GGPVL VFTLG+
Sbjct: 367 KQEISDKKRVYLMKILVLVYGSVCIILSFLAKYMGSVLQTALTIFGVIGGPVLAVFTLGI 426

Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSV 160
            + + NQ+GAL G++ GL+F  ++GFGGPKP  + LPS    C               ++
Sbjct: 427 LLPYINQKGALTGLIVGLIFSFIIGFGGPKPPVENLPSYTNSC---------------TI 471

Query: 161 DNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYD 220
            NN          Y   +  +D Y YLYRISY+YYIVLGF VT +V  IVS  F     D
Sbjct: 472 FNNSASSTQLPSSYYKGALHEDGYVYLYRISYLYYIVLGFLVTFVVAMIVSAIFRGKKRD 531

Query: 221 VN--LLTPWVAARARRKHNG 238
            N  L TP VA R +R+  G
Sbjct: 532 HNPDLFTPCVANRLKRRDKG 551

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018424|gb|EGI59018.1| Putative sodium-dependent multivitamin transporter [Acromyrmex echinatior]

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 125/228 (54%), Gaps = 21/228 (9%)

Query: 15  SKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL 74
           S SA Q    A     + +PLY        S  +   ++KVL F +G++ + +A+LA++L
Sbjct: 428 SISAAQNSLAAVTLEDYIKPLYKKCVGYEFSPTKSAFMAKVLAFTFGIISIALAFLAQFL 487

Query: 75  GSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPK 134
           G +LQASLTIFGVVGGP+LGVFTLGM    A + GA+ G ++   F   + FG P+P P 
Sbjct: 488 GGLLQASLTIFGVVGGPLLGVFTLGMGTESATESGAIIGALTAFSFLFWIVFGQPRPMPP 547

Query: 135 KLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMY 194
           KLP++IEGC N+     S+L+   S+                 S+    YFYLYRISYM+
Sbjct: 548 KLPTSIEGCDNVANITMSVLQNVTSLSK---------------STGDSSYFYLYRISYMW 592

Query: 195 YIVLGFCVTMLVGAI---VSRFF---DTPSYDVNLLTPWVAARARRKH 236
           Y  LGF +T ++G I   +SR F        D NL  P +A R R + 
Sbjct: 593 YSPLGFLITFILGLIISNISRLFLKKQNDELDTNLFFPVLARRIRYRR 640

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193690733|ref|XP_001949204.1| PREDICTED: putative sodium-dependent multivitamin transporter-like isoform 1 [Acyrthosiphon pisum] gi|328711137|ref|XP_003244455.1| PREDICTED: putative sodium-dependent multivitamin transporter-like isoform 2 [Acyrthosiphon pisum]

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 21/195 (10%)

Query: 41  NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGM 100
            + ISD++     K+L  +YG +CL +A+L++YLGS+LQ SL IFGV+GGPVL VFTLG+
Sbjct: 367 KQDISDKKRVFYMKLLVLVYGAICLLLAFLSQYLGSILQTSLVIFGVIGGPVLAVFTLGI 426

Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSV 160
            +   NQ+G+L G+V GL+F   +GFG  +PA K LP+ I  CP +         L+ ++
Sbjct: 427 LLPHVNQKGSLTGLVIGLVFSFSIGFG--RPAAKNLPTYINACPTV---------LNQTI 475

Query: 161 DNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYD 220
             + +  +          SS D Y YL+RISYMY IVLGF VT+LV  +VS  F     D
Sbjct: 476 QQSLLLYN---------ESSNDNYSYLHRISYMYCIVLGFMVTILVALVVSSIFKEEHCD 526

Query: 221 -VNLLTPWVAARARR 234
             +L TP+VA R R+
Sbjct: 527 NPDLFTPFVAKRLRK 541

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851180|ref|XP_003701117.1| PREDICTED: uncharacterized protein LOC100879178 [Megachile rotundata]

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 133/258 (51%), Gaps = 34/258 (13%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +P+Y     +  S      L+K+L FIYGL+C+ +A+LA+YLG VLQA LTIFGVVGG
Sbjct: 363 YLKPIYKKCCAKEFSVTTSTTLAKLLAFIYGLLCIVLAFLAQYLGGVLQAGLTIFGVVGG 422

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LG+FTLGM    AN+ G++ G    L+    + FG P+P P  LP++  GC N     
Sbjct: 423 PLLGLFTLGMLTETANEIGSVTGATISLVLLFWIAFGQPRPIPPTLPTSDIGCTN----- 477

Query: 151 SSILRLDNSVDNNFIDEDATTIRYTDMSSSQD-QYFYLYRISYMYYIVLGFCVTMLVGAI 209
                              TT+ + D   S D  Y YLYRISYM+Y  LGF +T ++G  
Sbjct: 478 -------------------TTVFHLDTQPSGDSSYLYLYRISYMWYSPLGFVITFVIGLF 518

Query: 210 VS----RFFDTP--SYDVNLLTPWVAARARRKHNGPYKEPEGAVGENAANDKREPGMSCC 263
           +S         P    D+NL  P VA R RRK   P +  E  V ++    ++   +   
Sbjct: 519 LSFCLNHMLKKPKVELDLNLYFPVVANRIRRKRREPLETSEEEVLKDKTAQRKY--IFTI 576

Query: 264 GVGRQTETKEKYIRSRIV 281
                TE  E  +RSRI+
Sbjct: 577 NSTHDTENVED-MRSRIL 593

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207964|gb|EFN85523.1| Putative sodium-dependent multivitamin transporter [Harpegnathos saltator]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 128/218 (58%), Gaps = 13/218 (5%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +PL+     + +S R    LSKVL  + GL CL IA+L ++LG +LQA+LTIFGVVGG
Sbjct: 362 YIKPLWRVR-RKELSARMSVILSKVLALVVGLTCLTIAFLTRFLGGLLQAALTIFGVVGG 420

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LG++TLGM V   NQ+GA+ G V  L F S +GFG PKP   +L  + +GC     S 
Sbjct: 421 PMLGLYTLGMFVPSCNQRGAITGFVLSLAFSSWIGFGQPKPPIPRLSVSTDGC----GSN 476

Query: 151 SSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVG--- 207
            +++    +   +FI   A++  Y D S     YFYLYRISYM+Y  LGF V + VG   
Sbjct: 477 DTVITYHGNDGGSFI--YASSASYDDRSQENGSYFYLYRISYMWYCPLGFLVAVAVGWAA 534

Query: 208 AIVSRFF---DTPSYDVNLLTPWVAARARRKHNGPYKE 242
           + ++R+    D    D  LL+P VA RA++   G   E
Sbjct: 535 SWIARWIFKEDPSEIDPVLLSPIVAKRAKQGGRGETDE 572

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321467745|gb|EFX78734.1| hypothetical protein DAPPUDRAFT_320205 [Daphnia pulex]

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           +  SD R   +++++  +YG + + IA++A+YLG VLQASLTIFGVVGGP+L +FTLGM 
Sbjct: 421 KKTSDSRLTWVTQLVALLYGAISIAIAFVAEYLGGVLQASLTIFGVVGGPLLALFTLGMF 480

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVD 161
            T   Q+GAL G++SGL+F   VGFGGPKP   +LP   +GC + + +       D S  
Sbjct: 481 STVVEQKGALTGLISGLVFSLWVGFGGPKPPIPRLPLRNDGCSSFLNA------TDYSSS 534

Query: 162 NNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFD 215
           +  +   +T+   T  + ++D YF LYRISYM+Y  LGF VT+LV  +VSR  +
Sbjct: 535 DQLLSTVSTSPLPTLPTPTEDDYFPLYRISYMWYAPLGFLVTVLVAQVVSRIVN 588

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24641117|ref|NP_727460.1| CG32669 [Drosophila melanogaster] gi|47117127|sp|P83740.1|SC5A6_DROME RecName: Full=Putative sodium-dependent multivitamin transporter; Short=Na(+)-dependent multivitamin transporter gi|22832061|gb|AAF47962.2| CG32669 [Drosophila melanogaster] gi|54650750|gb|AAV36954.1| LP07514p [Drosophila melanogaster] gi|220952070|gb|ACL88578.1| CG32669-PA [synthetic construct]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 38/247 (15%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +PL S    RT++DR+    SK+L+  +G +C+ +A++A  +G +LQA+L+IFG++GG
Sbjct: 362 YLKPLVSCCAKRTLTDRQTLWYSKLLSLFFGALCIGMAFMAGSIGGLLQAALSIFGIIGG 421

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LG+FTLGM VT AN++GA+ G++  L FC  +GFG PKP    L  +  GCP      
Sbjct: 422 PLLGLFTLGMYVTKANEKGAIGGLLISLAFCFWIGFGQPKPPLVSLDMSTAGCP------ 475

Query: 151 SSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIV 210
                    VD +F  +    ++     + ++ YFYLYRISYM+Y  LGF +T   G ++
Sbjct: 476 ---------VDRSFARD--IFLKTVIAVAEEEHYFYLYRISYMWYAALGFLITFFGGWLL 524

Query: 211 SRFFDTPSYDVN---------------LLTPWVAARARRKH------NGPYKEPEGAVGE 249
           S  F    +D N               L  P +A R +R+        G   E  G   E
Sbjct: 525 SWLFALLKWDNNRRIYQDADCTLIKHDLFVPPIAKRLQRRQMPLLVVTGTSSEIGGITTE 584

Query: 250 NAANDKR 256
           +A    R
Sbjct: 585 SATAPPR 591

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213713|gb|EFN89062.1| Putative sodium-dependent multivitamin transporter [Harpegnathos saltator]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 122/213 (57%), Gaps = 19/213 (8%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +P+Y    +  IS  R   ++K+L FI+G++ + +A+LA+ LG VLQA LTIFGVVGG
Sbjct: 365 YIKPVYKKFADHEISAARSTTVAKLLAFIFGIISIALAFLAQLLGGVLQAGLTIFGVVGG 424

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LGVFTLGM    A + GAL G ++ L F   + FG P+P    LP +IEGC       
Sbjct: 425 PLLGVFTLGMGTESAIEGGALVGSLTSLAFLFWIAFGQPRPILPILPRSIEGC------- 477

Query: 151 SSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIV 210
                + N+  N  I  +AT+I     + S++ Y YLYRISYM+Y  LGF +T +VG +V
Sbjct: 478 -----VTNNSANATILGNATSIPVLQ-NVSENSYPYLYRISYMWYCPLGFLITFVVGLVV 531

Query: 211 SRFF------DTPSYDVNLLTPWVAARARRKHN 237
           S  F           D+ L  P VA R R + +
Sbjct: 532 SNLFHLCNKNQNDDLDLKLFFPLVARRIRYRRS 564

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177539|gb|EFN66650.1| Putative sodium-dependent multivitamin transporter [Camponotus floridanus]

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 16/194 (8%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +P+Y   T R  S  R   ++K+L F++G++ + +A+LA+ LG VLQA LTIFGVVGG
Sbjct: 365 YMKPIYRKYTRREFSPTRSTTIAKILAFVFGIISIALAFLAQLLGGVLQAGLTIFGVVGG 424

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LGVFTLGM    A ++G +   ++ L F   + FG P+P P  LP+TI+GC       
Sbjct: 425 PLLGVFTLGMGTESATEEGVVISTLTALTFLFWMAFGQPRPMPPMLPTTIKGC------- 477

Query: 151 SSILRLDNSVDNN--FIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGA 208
                ++N++ N   F+ ++ T +     S+    YFYLYRISYM+Y  LGF +T ++G 
Sbjct: 478 ----DMNNTLTNATVFVSQNVTNVF---KSTGDSSYFYLYRISYMWYAPLGFLITFILGL 530

Query: 209 IVSRFFDTPSYDVN 222
            +S  F     D N
Sbjct: 531 FISGLFRLFIKDQN 544

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762736|ref|XP_001963490.1| GF20262 [Drosophila ananassae] gi|190629149|gb|EDV44566.1| GF20262 [Drosophila ananassae]

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 116/193 (60%), Gaps = 16/193 (8%)

Query: 31  HCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90
           + +PL  +   R++SD++    SK+L+  YG +C+ +A++A  +G +LQA+L+IFG+VGG
Sbjct: 362 YLKPLMHFVAKRSLSDQQTLWYSKLLSIFYGALCIGMAFMAGSIGGLLQAALSIFGIVGG 421

Query: 91  PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
           P+LG+FTLGM VT AN +GA AG+V  L FC  +GFG PKP    L  + EGCP      
Sbjct: 422 PLLGLFTLGMYVTSANGKGATAGLVISLAFCFWIGFGQPKPPLVGLDMSTEGCP------ 475

Query: 151 SSILRLDNSVDNN-FIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAI 209
                ++ S   + F+   A+     +  S+ D YFYLYRISYM+Y  LGF VT   G +
Sbjct: 476 -----VNRSYARDIFLKAKAS----GEEDSADDHYFYLYRISYMWYAALGFVVTFFGGWL 526

Query: 210 VSRFFDTPSYDVN 222
           +S       +D N
Sbjct: 527 LSWLCALLGWDSN 539

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
FB|FBgn0052669	604	CG32669 [Drosophila melanogast	0.494	0.233	0.359	4.3e-27
FB|FBgn0034494	587	CG10444 [Drosophila melanogast	0.614	0.298	0.345	1.6e-23
ZFIN|ZDB-GENE-041001-177	625	si:dkey-5g7.3 "si:dkey-5g7.3"	0.550	0.251	0.346	1.1e-15
UNIPROTKB|E2RI16	612	SLC5A8 "Uncharacterized protei	0.564	0.263	0.291	2.3e-15
UNIPROTKB|F1P5L0	613	SLC5A8 "Uncharacterized protei	0.561	0.261	0.325	2.3e-15
ZFIN|ZDB-GENE-050913-86	603	slc5a6 "solute carrier family	0.543	0.257	0.341	3e-14
UNIPROTKB|Q8N695	610	SLC5A8 "Sodium-coupled monocar	0.568	0.265	0.308	1.2e-13
MGI|MGI:2384916	611	Slc5a8 "solute carrier family	0.568	0.265	0.297	1.7e-13
RGD|1564146	611	Slc5a8 "solute carrier family	0.568	0.265	0.297	1.7e-13
UNIPROTKB|F1MT46	623	SLC5A5 "Uncharacterized protei	0.575	0.263	0.348	1.7e-13

FB|FBgn0052669 CG32669 [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
 Identities = 51/142 (35%), Positives = 77/142 (54%)

Query:     3 YVMRKYCNRSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGL 62
             +V   +C       S    L    L   + +PL S    RT++DR+    SK+L+  +G 
Sbjct:   335 FVSGIFCASLSTISSIISSLAAVTLE-DYLKPLVSCCAKRTLTDRQTLWYSKLLSLFFGA 393

Query:    63 VCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMTVTFANQQGALAGIVSGLLFCS 122
             +C+ +A++A  +G +LQA+L+IF          FTLGM VT AN++GA+ G++  L FC 
Sbjct:   394 LCIGMAFMAGSIGGLLQAALSIFGIIGGPLLGLFTLGMYVTKANEKGAIGGLLISLAFCF 453

Query:   123 LVGFGGPKPAPKKLPSTIEGCP 144
              +GFG PKP    L  +  GCP
Sbjct:   454 WIGFGQPKPPLVSLDMSTAGCP 475

GO:0006810 "transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=NAS

GO:0051180 "vitamin transport" evidence=NAS

GO:0008523 "sodium-dependent multivitamin transmembrane transporter activity" evidence=NAS

FB|FBgn0034494 CG10444 [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 66/191 (34%), Positives = 99/191 (51%)

Query:    17 SADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGS 76
             SA   L    L   + +PLY     RT+ D +    +K++  I+GL+C+ +A++A  +G 
Sbjct:   351 SAVTSLSAVTLE-DYLKPLYKAIFKRTLIDSKSTMPTKIVACIFGLLCIGLAFVAGSMGG 409

Query:    77 VLQASLTIFXXXXXXXXXXFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKL 136
             VLQASLTIF          FTLG+  T +NQ+G L G +  L+    +GFGGPKP P  L
Sbjct:   410 VLQASLTIFGVVGGPLLAIFTLGVCTTRSNQRGVLLGFLVSLIVSFWMGFGGPKPKPVTL 469

Query:   137 PSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYI 196
               +  GC N    ++  + L +      I+ D               YF+LYRISY++  
Sbjct:   470 EFSTAGCENATAVMARAIELSSKSSGVVIEPD---------------YFWLYRISYLWLS 514

Query:   197 VLGFCVTMLVG 207
             V+GF + ++VG
Sbjct:   515 VIGFLIAVVVG 525

GO:0008523 "sodium-dependent multivitamin transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-041001-177 si:dkey-5g7.3 "si:dkey-5g7.3" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 61/176 (34%), Positives = 88/176 (50%)

Query:    44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMTVT 103
             +++ R   LSK+L   YGLVCL +AY+A  +GSVLQA+L+IF          F LGM   
Sbjct:   375 MTEARATLLSKMLALAYGLVCLAMAYIASLMGSVLQAALSIFGMVGGPLLGLFCLGMFFP 434

Query:   104 FANQQGALAGIVSGLLFCSLVGFGG--PKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVD 161
             +AN  GAL G+ SGL+    +G G    + +P  LP  I     ++P + +   +  +V 
Sbjct:   435 WANSTGALVGLASGLVMAFWIGIGSFVSRMSPSALP-VINA--TIIPDVGN---MTTAV- 487

Query:   162 NNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTP 217
                     TT+  T    S  Q   LY +SYM+Y        ++VG +VS F   P
Sbjct:   488 -------MTTLTTTKPRPSGVQA--LYSLSYMWYSAHNSATVVVVGLVVS-FLTGP 533

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RI16 SLC5A8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 51/175 (29%), Positives = 94/175 (53%)

Query:    42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMT 101
             R++S+R    +S+ ++ ++G++C+ +A LA  +G++LQA+L+IF          F LG+ 
Sbjct:   376 RSLSERSLSWISQGMSVLFGVLCIGMAALASLMGALLQAALSIFGMVGGPLLGLFALGIL 435

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK-LPSTIE--GCPNLVPSLSSILRL 156
             V FAN  GALAG+++G      VG G     P P++ +P ++E  GC N   + + +   
Sbjct:   436 VPFANSIGALAGLMAGFAISLWVGIGAQLYPPLPERTMPLSLETYGCNNTYNATNWVTTT 495

Query:   157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
             +    + F       +   + +   D +   Y +SY+Y+  +G  VTM +G ++S
Sbjct:   496 EMPFTSAF------QVHNAERTPLMDNW---YSLSYLYFSTVGTLVTMFMGMLIS 541

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1P5L0 SLC5A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 57/175 (32%), Positives = 91/175 (52%)

Query:    42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMT 101
             R++S+++   +S  ++  YG VC+ +A LA  LG++LQA+L+IF          F LG+ 
Sbjct:   374 RSLSEKKLSWISMGMSLFYGGVCIAMAALASLLGALLQAALSIFGMVGGPLLGLFALGIL 433

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK---LPSTIEGCPNLVPSLSSILRL 156
              +FAN  GA  G+++G +    VG G     P P++   LP +  GC N+  S++S   L
Sbjct:   434 CSFANGIGAFVGLITGFVISLWVGIGSQIYPPLPERTMPLPLSTAGC-NI--SIAS--NL 488

Query:   157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
                 +N       TTI  T  +       + Y +SY+Y+  LG   T+ VG I+S
Sbjct:   489 TTPTENPL-----TTIFSTQAAERPVLADHWYSLSYLYFSTLGTLTTIAVGMIIS 538

GO:0005215 "transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050913-86 slc5a6 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 58/170 (34%), Positives = 87/170 (51%)

Query:    43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGS-VLQASLTIFXXXXXXXXXXFTLGMT 101
             ++++ R   LSK+L   YG++CL +AYL   + S VLQA+L+IF          F LG+ 
Sbjct:   373 SMTEARATLLSKLLALSYGIICLAMAYLVHLMNSSVLQAALSIFGMIGGPLLGLFCLGIF 432

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVD 161
                AN  GA+ G+ +GLL    VG GG      ++PS +      +P L+S + + + V 
Sbjct:   433 FPCANSIGAVTGLSAGLLMAFWVGIGG---FLTRMPSPV------IPLLNSTITVPD-VS 482

Query:   162 NNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
              N     AT     D  S+    FY   +SYM+Y  L  C  ++VG I+S
Sbjct:   483 ENITA--ATAELEADSRSAGLHGFY--SLSYMWYSALSSCTVLIVGLIIS 528

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8N695 SLC5A8 "Sodium-coupled monocarboxylate transporter 1" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 54/175 (30%), Positives = 93/175 (53%)

Query:    42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMT 101
             R++S+R    +S+ ++ +YG +C+ +A LA  +G++LQA+L++F          F LG+ 
Sbjct:   374 RSLSERSLSWISQGMSVVYGALCIGMAALASLMGALLQAALSVFGMVGGPLMGLFALGIL 433

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK-LPS--TIEGCPNLVPSLSSILRL 156
             V FAN  GAL G+++G      VG G     P P++ LP    I+GC N   + ++++  
Sbjct:   434 VPFANSIGALVGLMAGFAISLWVGIGAQIYPPLPERTLPLHLDIQGC-NSTYNETNLM-- 490

Query:   157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
               + +  F       I     +   D +   Y +SY+Y+  +G  VT+LVG +VS
Sbjct:   491 -TTTEMPFTTS-VFQIYNVQRTPLMDNW---YSLSYLYFSTVGTLVTLLVGILVS 540

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

MGI|MGI:2384916 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Mus musculus (taxid:10090)]

 Score = 195 (73.7 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 52/175 (29%), Positives = 94/175 (53%)

Query:    42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMT 101
             +++S++    +S+ ++ +YG +C+ +A LA  +G++LQA+L+IF          F+LG+ 
Sbjct:   374 KSLSEKSLSWISQGMSVLYGALCIGMAALASLMGALLQAALSIFGMVGGPLLGLFSLGIL 433

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK-LPSTIE--GCPNLVPSLSSILRL 156
             V FAN  GAL G+++G      VG G     P P++ LP  +E  GC N+  + S  +  
Sbjct:   434 VPFANSIGALTGLLAGFAISLWVGIGAQLYPPLPERTLPLPLETYGC-NITHNGSDWM-- 490

Query:   157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
              ++ +  F    A  I   + +   D +   Y +SY+Y+  +G   T+ VG ++S
Sbjct:   491 -STTEMPF-STSAFQIHNAERTPLMDNW---YSLSYLYFSTIGTLTTLFVGILIS 540

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1564146 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 52/175 (29%), Positives = 96/175 (54%)

Query:    42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFXXXXXXXXXXFTLGMT 101
             +++S++    +S+ ++ +YG +C+ +A +A  +G++LQA+L+IF          F+LG+ 
Sbjct:   374 KSLSEKSLSWISQGMSVLYGALCIGMAAVASLMGALLQAALSIFGMVGGPLLGLFSLGIL 433

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGGP--KPAPKK-LPSTIE--GCPNLVPSLSSILRL 156
             V FAN  GA AG+++G      VG G     P P++ LP ++E  GC N   + +  +  
Sbjct:   434 VPFANSVGAFAGLLAGFAVSLWVGIGAQLYPPLPERTLPLSLETHGC-NSTHNGTDWM-- 490

Query:   157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
              ++ +  F    A  I   + S+  D +   Y +SY+Y+  +G   T+LVG ++S
Sbjct:   491 -STTEMPF-STSAFQIHDVERSALMDNW---YSLSYLYFSTIGTLTTLLVGILIS 540

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1MT46 SLC5A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 61/175 (34%), Positives = 82/175 (46%)

Query:    43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGS-VLQASLTIFXXXXXXXXXXFTLGMT 101
             +++ RR   +SK L+ IYG  CL +A L+  LG  VLQ S T+           F LGM 
Sbjct:   377 SLAPRRLVIISKGLSLIYGSACLTVAALSSLLGGGVLQGSFTVMGVISGPLLGAFILGMF 436

Query:   102 VTFANQQGALAGIVSGLLFCSLVGFGG---PKPAPKK--LPSTIEGCPNLVPSLSSILRL 156
             V   N  G L+G+  GL     V  G    P  A     LPS+  GC   VPS ++   L
Sbjct:   437 VPTCNTPGVLSGLAVGLALSLWVAVGATLYPPSAQSMGVLPSSASGCA--VPSANASGLL 494

Query:   157 DNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
             D  +  N     ++     D  +  D +   Y ISY+YY  LG   T+L GA+VS
Sbjct:   495 DPLLTANASSRVSSLEMDPDQQTLADNF---YAISYLYYGALGTVCTVLCGALVS 546

GO:0071371 "cellular response to gonadotropin stimulus" evidence=IEA

GO:0071320 "cellular response to cAMP" evidence=IEA

GO:0015111 "iodide transmembrane transporter activity" evidence=IEA

GO:0008507 "sodium:iodide symporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
cd11492	522	cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and	2e-48
cd11505	536	cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra	1e-28
cd11519	541	cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr	3e-28
cd11504	527	cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp	3e-26
cd11503	535	cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N	8e-26
cd11520	529	cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr	5e-21
cd10326	477	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and	1e-15
cd11495	477	cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg	5e-10
cd11493	479	cd11493, SLC5sbd_NIS-like_u1, uncharacterized subg	6e-10
TIGR00813	407	TIGR00813, sss, transporter, SSS family	2e-09
cd10322	455	cd10322, SLC5sbd, Solute carrier 5 family, sodium/	3e-08
cd11494	481	cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg	3e-06
cd11478	495	cd11478, SLC5sbd_u2, Uncharacterized bacterial sol	1e-05
COG0591	493	COG0591, PutP, Na+/proline symporter [Amino acid t	2e-05
TIGR03648	552	TIGR03648, Na_symport_lg, probable sodium:solute s	0.003
cd11477	495	cd11477, SLC5sbd_u1, Uncharacterized bacterial sol	0.004

>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

 Score =  168 bits (427), Expect = 2e-48
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 12/168 (7%)

Query: 44  ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
           +S+R+   + K L  ++GL+C+ +A+LA+ LG VLQA+L+IFG++GGP+LG+FTLGM   
Sbjct: 365 LSERKATNIMKGLVLVFGLLCIGLAFLAELLGGVLQAALSIFGIIGGPLLGLFTLGMFFP 424

Query: 104 FANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNN 163
           +AN +GAL G++ GL F   +G GG +PA    P +    P           L     N 
Sbjct: 425 WANSKGALVGLLVGLAFSLWIGIGG-QPAYPPGPLSTPPLP-----------LSTEGCNY 472

Query: 164 FIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
             +   TT   T  +  + + F LYRISY+YY ++G  +T++VG IVS
Sbjct: 473 TNNTTTTTSTTTTTTEDESELFSLYRISYLYYSLIGTLITVVVGLIVS 520

NIS (encoded by the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and -2. SMCT1(encoded by the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (encoded by the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 522

>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain

 Score =  113 bits (285), Expect = 1e-28
 Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 33/184 (17%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           R++S+R+   +SK ++ +YG VC+ +A LA  +G +LQA+L+IFG+VGGP+LG+F+LG+ 
Sbjct: 368 RSLSERKLSWISKGMSLLYGAVCIGMAGLASLMGGLLQAALSIFGMVGGPLLGLFSLGIL 427

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPS--TIEGCPNLVPSLSSILRL 156
             FAN +GAL+G+++G      VG G    P P  + LP   + EGC             
Sbjct: 428 FPFANSKGALSGLLTGFAISLWVGIGAQIYPPPPERTLPLPLSTEGC------------- 474

Query: 157 DNSVDNNFIDEDATTIRYTDMSSSQDQYF---------YLYRISYMYYIVLGFCVTMLVG 207
                 NF + ++ T   T+M ++                Y +SY+Y+  +G  VT+LVG
Sbjct: 475 ------NFTNTESNTTTTTEMPTTIFPTQPSSRPPLADNWYSLSYLYFSTVGTLVTILVG 528

Query: 208 AIVS 211
            IVS
Sbjct: 529 LIVS 532

SMCT1 is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. Human SMCT1 (hSMCT1, also called AIT) is encoded by the tumor suppressor gene SLC5A8. SMCT1 is expressed in the colon, small intestine, kidney, thyroid gland, retina, and brain. SMCT1 may contribute to the intestinal/colonic and oral absorption of monocarboxylate drugs. It also mediates iodide transport from thyrocyte into the colloid lumen in thyroid gland and, through transporting L-lactate and ketone bodies, helps maintain the energy status and the function of neurons. SMCT2 is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2 is expressed in the kidney, small intestine, skeletal muscle, and retina. In the kidney, SMCT2 may initiate lactate absorption in the early parts of the tubule, SMCT1 in the latter parts of the tubule. In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 536

>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain

 Score =  112 bits (283), Expect = 3e-28
 Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 33/184 (17%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
           R++S+R+   +S  ++  YG +C+ +A LA  +G++LQA+L+IFG+VGGP+LG+F LG+ 
Sbjct: 368 RSLSERKLSWISMGMSLFYGALCIGMAGLASLMGALLQAALSIFGMVGGPLLGLFALGIL 427

Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPS--TIEGCPNLVPSLSSILRL 156
             FAN  GAL G+VSG      VG G    P    + LP   + EGC             
Sbjct: 428 FPFANSIGALVGLVSGFAISLWVGIGAQIYPPLPERTLPLPLSTEGC------------- 474

Query: 157 DNSVDNNFIDEDATTIRYTDMSSSQDQYF---------YLYRISYMYYIVLGFCVTMLVG 207
                 NF + ++ T   T+M  +                Y +SY+Y+  LG  VTMLVG
Sbjct: 475 ------NFTNTESNTTTTTEMPFTIFPTQPSPRPPLADSWYSLSYLYFSTLGTLVTMLVG 528

Query: 208 AIVS 211
            IVS
Sbjct: 529 LIVS 532

SMCT1 is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. Human SMCT1 (hSMCT1, also called AIT) is encoded by the tumor suppressor gene SLC5A8. Its expression is under the control of the C/EBP transcription factor. Its tumor-suppressive role is related to uptake of butyrate, propionate, and pyruvate, these latter are inhibitors of histone deacetylases. SMCT1 is expressed in the colon, small intestine, kidney, thyroid gland, retina, and brain. SMCT1 may contribute to the intestinal/colonic and oral absorption of monocarboxylate drugs. SMCT1 also mediates iodide transport from thyrocyte into the colloid lumen in thyroid gland and through transporting l-lactate and ketone bodies helps maintain the energy status and the function of neurons. In the kidney its expression is limited to the S3 segment of the proximal convoluted tubule (in contrast to the low-affinity monocarboxylate transporter SMCT2, belonging to a different family, which is expressed along the entire length of the tubule). In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner, SMCT1 is expressed predominantly in retinal neurons and in retinal pigmented epithelial (RPE) cells. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 541

>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain

 Score =  107 bits (268), Expect = 3e-26
 Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 21/173 (12%)

Query: 44  ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
           +++ R   LSK L   YGL+CL +AYLA  +GSVLQA+ +IFG++GGP+LG+F LGM   
Sbjct: 367 MTEARATLLSKGLALGYGLLCLAMAYLASLMGSVLQAANSIFGMIGGPLLGLFCLGMFFP 426

Query: 104 FANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPSTIEGC--PNLVPSLSSILRLDN 158
           +AN  GA+ G++SGL+    +G G       +P K P  I     PN+  + ++      
Sbjct: 427 WANSTGAVVGLLSGLVMAFWIGIGSFVFRMYSPTKSPP-INDTIFPNVTNATAATP---- 481

Query: 159 SVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
                      TT+  T           LY +SYM+Y        ++VG +VS
Sbjct: 482 -----------TTLFATPTDPRPPGLQALYSLSYMWYSAHNSATVVVVGLVVS 523

This multivitamin transporter SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate, and is essential for mediating biotin uptake into mammalian cells. SMVT is expressed in the placenta, intestine, heart, brain, lung, liver, kidney and pancreas. Biotin may regulate its own cellular uptake through participation in holocarboxylase synthetase-dependent chromatin remodeling events at SMVT promoter loci. The cis regulatory elements, Kruppel-like factor 4 and activator protein-2, regulate the activity of the human SMVT promoter in the intestine. Glycosylation of the hSMVT is important for its transport function. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 527

>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain

 Score =  106 bits (265), Expect = 8e-26
 Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 42  RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLG-SVLQASLTIFGVVGGPVLGVFTLGM 100
            T+S R+   +SK L+ IYG  C+ +A L+  LG  VLQ S T+ GV+ GP+LG F LGM
Sbjct: 362 PTLSPRKLVFISKGLSLIYGSACITVAALSSLLGGGVLQGSFTVMGVISGPLLGAFALGM 421

Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGP-KPAPKK----LPSTIEGCPNLVPSLSSILR 155
            V   N  G  +G+  GL     V  GG   P   +    LP++   CP    +LS+   
Sbjct: 422 FVPACNTPGVFSGLAVGLALSLWVAVGGTLYPPSAQIMGVLPTSAAHCPLTNVTLSTTGS 481

Query: 156 LDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRF 213
           ++ S         +     +  +         Y ISY+YY  LG   T+L G ++S  
Sbjct: 482 VNAS---------SPPQSSSMDNIRPALADDFYAISYLYYGALGTLSTVLCGVLISYL 530

NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. NIS is expressed in the thyroid, colon, ovary, and in human breast cancers. It mediates the active transport and the concentration of iodide from the blood into thyroid follicular cells, a fundamental step in thyroid hormone biosynthesis, and is the basis of radioiodine therapy for thyroid cancer. Mutation in the SLC5A5 gene can result in a form of thyroid hormone dysgenesis. Human NIS exists mainly as a dimer stabilized by a disulfide bridge. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 535

>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain

 Score = 92.2 bits (229), Expect = 5e-21
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 24/174 (13%)

Query: 44  ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
           +S++    +SK L  ++G++C  +A  A  +G V+QA+L+I G+ GGP+LG+FTLG+   
Sbjct: 370 LSEKLSTWISKGLCILFGVMCTSMAVAASLMGGVVQAALSIHGMCGGPMLGLFTLGIVFP 429

Query: 104 FANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLP---STIEGCPNLVPSLSSILRLD 157
           F N +GAL G+++G+     VG G    P P+ K LP   ST  GC              
Sbjct: 430 FVNWKGALGGLLTGITLSFWVGIGAFIYPAPSSKTLPLELST-AGC-------------- 474

Query: 158 NSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
              ++      AT I  +D     D +   Y +SY+YY  +G    +  G ++S
Sbjct: 475 ILANSTATPTPATPILTSDRPLLADTW---YSLSYLYYSAVGCLGCIAAGLLIS 525

SMCT2 is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2) is encoded by the SLC5A12 gene. SMCT2 is expressed in the kidney, small intestine, skeletal muscle, and retina. In the kidney, it is expressed in the apical membrane of the proximal convoluted tubule, along the entire length of the tubule (in contrast to the high-affinity monocarboxylate transporter SMCT1, belonging to a different family, which is limited to the S3 segment of the tubule). SMCT2 may initiate lactate absorption in the early parts of the tubule. In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner, SMCT2 is expressed exclusively in Muller cells. Nicotine transport by hSMCT2 is inhibited by several non-steroidal anti-inflammatory drugs. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 529

>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 38  YSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFT 97
           +  +  +S+R+   +SK LT + G++C  +A LA   GSVLQA L I G   GP+LG+F 
Sbjct: 358 FKRSWQLSERKYVHISKSLTLLLGILCFGMALLASNNGSVLQAILKIAGYTYGPLLGLFA 417

Query: 98  LGMTVTFANQQ--GALAGIVSGLLFCSLVGFGG 128
            G+    AN+   G L G+++ +L   LVG   
Sbjct: 418 FGLFTKRANKDSWGPLVGLLAPVLSYLLVGISA 450

NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and 2. SMCT1(the product of the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (product of the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 477

>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 45  SDRRGGQLSKVLTFIYGLVCLCIA-YLAKY-LGSVLQASLTIFGVVGGPVLGVFTLGMTV 102
           SD++  ++++++T + G++    A  LA   + S+L   L + G+ GG + G+F LG+  
Sbjct: 362 SDKKYLRVARLITLLVGILGTGGALLLAHSNVKSLLDLFLKLTGLFGGGLAGLFLLGIFT 421

Query: 103 TFANQQGALAGIVSGLLFCSLVGFGGPKPAP 133
             AN +GALAGI+  +L    +         
Sbjct: 422 KRANNRGALAGIIVSVLVTFWISLSTGALYT 452

Proteins belonging to the same subfamily as this uncharacterized subgroup include i) NIS, which transports I-, and other anions including ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin, pantothenic acid and lipoate, and iii) the Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1 is a high-affinity transporter while SMCT2 is a low-affinity transporter. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 477

>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 27  LSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLG-SVLQASLTIF 85
           L+ S  Q LY     R +SD +  +LS++LT ++ +V + IA L ++    V++  L+I 
Sbjct: 347 LASSTVQDLYQPWLRRRLSDSKLLRLSRLLTLVWAVVLVAIALLFQHTDQPVVELGLSIA 406

Query: 86  GVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFG 127
               G +LGVF LG+    A+Q+ A+A  + G L   L+ FG
Sbjct: 407 SFTYGGLLGVFLLGLLTKRASQRDAIAAFIVGFLVMLLLIFG 448

Proteins belonging to the same subfamily as this uncharacterized subgroup include i) NIS, which transports I-, and other anions including ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin, pantothenic acid and lipoate, and iii) the Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1 is a high-affinity transporter while SMCT2 is a low-affinity transporter. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 479

>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 51  QLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGA 110
            + +    +     +     A   G VLQ     FG +G P L VF LG+     N +GA
Sbjct: 341 IVMRGRIAVLVAAVIAGFVAAAQGGQVLQYVQEAFGGLGAPFLPVFLLGIFWKRMNAKGA 400

Query: 111 LAGIVSG 117
           LAG+++G
Sbjct: 401 LAGMIAG 407

The Solute:Sodium Symporter (SSS) Family (TC 2.A.21) Members of the SSS family catalyze solute:Na+ symport. The solutes transported may be sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system. Members of the SSS family have been identified in bacteria, archaea and animals, and all functionally well characterized members catalyze solute uptake via Na+ symport. Proteins of the SSS generally share a core of 13 TMSs, but different members of the family may have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli [Transport and binding proteins, Cations and iron carrying compounds]. Length = 407

>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 41  NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGM 100
           N   SD++  ++ ++ T + G++ L +A    +  S++       G++   +     LG+
Sbjct: 346 NPKASDKKLLRVGRIATVVVGVLALLLAL---FPPSIILLLSLAAGLLAAALFPPLLLGL 402

Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGPKPAP 133
               A + GA+A ++ GL+   +    G     
Sbjct: 403 FWKRATKAGAIASLIVGLIVTLVWLLLGLASPF 435

This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease. Length = 455

>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 45  SDRRGGQLSKVLTFIYGLVCLCIA-YLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
           SD    ++S++LT  +GL+ +  A + A  LGS+++A   I     GP+LGVF L     
Sbjct: 374 SDEHYLKVSRLLTVFWGLLAIVFALFFAGSLGSLIEAVNKIGSYFYGPILGVFLLAFFTK 433

Query: 104 FANQQGALAGIVSGLLFCSLVGF 126
             N +G   G + G++   L+  
Sbjct: 434 KVNGKGVFIGAILGVIVVILLWL 456

Proteins belonging to the same subfamily as this uncharacterized subgroup include i) NIS, which transports I-, and other anions including ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin, pantothenic acid and lipoate, and iii) the Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1 is a high-affinity transporter while SMCT2 is a low-affinity transporter. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 481

>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 35  LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
           +Y     +  SD+   ++ ++ T +  L+ +  AY+A    +++    T+F     P+  
Sbjct: 355 IYQTYIRKDASDKHYLKVGRIATVVGVLISIGTAYIAMSFNNIMDYLQTLFSFFNAPLFA 414

Query: 95  VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFG 127
            F LGM    A   G   G+++G    ++V +G
Sbjct: 415 TFLLGMFWKRATPWGGFWGLLAGTAS-AIVLYG 446

SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 495

>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 35  LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
           +Y     +  S++   ++ +V+  +  L+ L +A L     S+L          G   L 
Sbjct: 357 IYKRFLRKNASEKELVRIGRVVVLVIALLALLLALLP--PSSILGLVSLALAGFGAQFLP 414

Query: 95  VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSIL 154
              LG+    A ++GA+AG+++GL    +V         K  P        L   +   +
Sbjct: 415 ALLLGLFWKRATKRGAIAGMIAGL----IVVLLTWLLFLKSFPYGAFALGGLYEVVPGFI 470

Length = 493

>gnl|CDD|234293 TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 28  SLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY-LGSVLQASLTIFG 86
           ++SH   LY    N   S+++   ++++   +     +   Y      G + Q     FG
Sbjct: 393 AISH--DLYYRIINPNASEKQRLLVARIALVV---AAVIAGYFGLNPPGFIAQVVAFAFG 447

Query: 87  VVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFC 121
           +          LG+     N++GA+AG+++GL F 
Sbjct: 448 LAAASFFPALVLGIFWKRMNREGAIAGMLTGLGFT 482

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. Length = 552

>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 41  NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGP-VLGVFTLG 99
               S++   ++ ++ T ++GL+ + +A  +  +G      L +   +GGP +L      
Sbjct: 361 KPDASEKELLRVGRLATVLFGLLSIVVALASDSIGGAFDIVLALGAGLGGPLLLPWL-WW 419

Query: 100 MTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLP 137
               +      +A I+ GLL   ++  G  +    + P
Sbjct: 420 RFNAWGEIWAMIASIIVGLLVSVVLKIGLGELFLLQFP 457

SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 495

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG2349|consensus	585		99.96
PRK10484	523	putative transporter; Provisional	99.73
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	99.66
PRK15419	502	proline:sodium symporter PutP; Provisional	99.56
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	99.53
PRK12488	549	acetate permease; Provisional	99.52
PRK09395	551	actP acetate permease; Provisional	99.51
COG4147	529	DhlC Predicted symporter [General function predict	99.47
PRK09442	483	panF sodium/panthothenate symporter; Provisional	99.42
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	99.41
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	99.37
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	99.35
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	99.34
TIGR00813	407	sss transporter, SSS family. have different number	99.21
COG4146	571	Predicted symporter [General function prediction o	98.92
KOG2348|consensus	667		98.62
COG4145	473	PanF Na+/panthothenate symporter [Coenzyme metabol	98.25
KOG3761|consensus	591		98.14

>KOG2349|consensus

Probab=99.96  E-value=5.2e-30  Score=255.93  Aligned_cols=212  Identities=30%  Similarity=0.455  Sum_probs=171.7

Q ss_pred             cCccchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q psy3973          11 RSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG   90 (285)
Q Consensus        11 ~~~~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~G   90 (285)
                      -.++|.|+.-||+|++++||++||++|     +++|++..+++|+++++.|++|++++++++.+++++|+.++++|+.+|
T Consensus       344 A~LSsLSS~~NS~s~v~~eD~ik~~~k-----~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~g  418 (585)
T KOG2349|consen  344 AALSSLSSIFNSLSTVFLEDYIKPLRK-----PLSERELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGG  418 (585)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhcC-----CcChHHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467899999999999999999999987     899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCC------CCCCCCccCCCCCC-CCCcc-chhcccCCCCC
Q psy3973          91 PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPA------PKKLPSTIEGCPNL-VPSLS-SILRLDNSVDN  162 (285)
Q Consensus        91 pllgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~------~~~lP~s~~gC~~~-~~~~~-~~~~~~~~~~~  162 (285)
                      |++|+|+||||+||+|++||++|+++|+++++|+.+++|...      +..+|.++++|... ..+.. ......+... 
T Consensus       419 P~~gvF~Lgmf~pr~N~kgA~~Gli~~~~~~~wi~i~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~l~~~~~-  497 (585)
T KOG2349|consen  419 PLLGVFVLGMFVPRVNEKGALVGLIAGLLLMLWISIGAQIVIAPGCILPDTLPVSVEGCHYLYFAIILFTVTGLVTLLV-  497 (585)
T ss_pred             cHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHhhhhhccCCccccCCCCCCccccccchhhhhhhhhccccccccC-
Confidence            999999999999999999999999999999999999988732      24689999999732 11110 0000000000 


Q ss_pred             CcccccccccccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhcc---CCCCCCCCcccHHHHHHHhh
Q psy3973         163 NFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFF---DTPSYDVNLLTPWVAARARR  234 (285)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt---~~~~~d~~Ll~p~~~~~~~~  234 (285)
                      .....  +   . .....++..+.+|++||+||+.+|+.+++++|++.|+.+   +.++.+|++++|..+++...
T Consensus       498 ~~~~~--~---~-~~~~~~~~~~~~y~is~~~y~~~g~~~~~~~~~~~s~~~~~~~~~k~~p~l~~~~~~~~~~~  566 (585)
T KOG2349|consen  498 PSQDA--H---R-LTTSLPNSEFSFYDISELWYSVLGFLTVIVVGILLSCGLGPDGKEKLNPILLSPVEAKFLSL  566 (585)
T ss_pred             ccccc--c---c-cccccccchhhhcchhhheeeecCcceEEEEEeeeeeecCcCCcCcCChhhcchhhhhhhcc
Confidence            00000  0   0 001112236789999999999999999999999999999   45789999999998877665

>PRK10484 putative transporter; Provisional

Probab=99.73  E-value=7e-17  Score=161.46  Aligned_cols=141  Identities=14%  Similarity=0.283  Sum_probs=116.4

Q ss_pred             cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhH
Q psy3973          14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~Gpl   92 (285)
                      ++.++..|+.|+++++|+||++.+    |+.+|+|.++++|+.++++|++++++|+..... ++++++.+...+.+.+|+
T Consensus       342 ST~~s~l~s~st~~t~Diy~~~~~----~~~s~~~~l~v~Ri~~vv~~ii~~~~a~~~~~~~~~i~~~~~~~~~~~~~pl  417 (523)
T PRK10484        342 STFNGFLNSASTLFSLDIYKPIIN----PNASEKQLVKVGKKFGFVLAIISMIVAPLIANAPQGLYSYLQQLNGIYNVPI  417 (523)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhHH
Confidence            344445555678999999999876    689999999999999999999999999766433 578888888889999999


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccc
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTI  172 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (285)
                      +++|++|+||||+|++||++|+++|+++.++..+.         |                                   
T Consensus       418 ~~~~llgl~wkr~n~~ga~~g~i~G~~~~~~~~~~---------~-----------------------------------  453 (523)
T PRK10484        418 LAIIIVGFFTKRVPALAAKVALGFGIILYIIINFV---------L-----------------------------------  453 (523)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHHH---------h-----------------------------------
Confidence            99999999999999999999999999875433210         0                                   


Q ss_pred             ccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973         173 RYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT  216 (285)
Q Consensus       173 ~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~  216 (285)
                              +      .+++|+|...+++++++++.+++|+++++
T Consensus       454 --------~------~~~~~~~~~~~~~~~~~~v~v~vsl~~~~  483 (523)
T PRK10484        454 --------K------FDIHFLYVLAILFVINVVVMLIIGKIKPR  483 (523)
T ss_pred             --------C------CCccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence                    0      12457888999999999999999999843

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=99.66  E-value=7.3e-16  Score=155.13  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=120.4

Q ss_pred             ccchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q psy3973          13 KFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        13 ~~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpl   92 (285)
                      .++.|+..|+.|+++++|+|+++.+    |+.+|++.++++|+.+++++++++.+|+..  .+.++++.....++.++++
T Consensus       380 mSt~~s~l~a~st~~~~Di~~~~~~----~~~s~~~~l~~~R~~~v~~~~~~~~~a~~~--~~~i~~l~~~~~~~~~~~~  453 (552)
T TIGR03648       380 LSTAAGLLLVISSAISHDLYYRIIN----PNASEKQRLLVARIALVVAAVIAGYFGLNP--PGFIAQVVAFAFGLAAASF  453 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC----CCCCchhhHHHHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHH
Confidence            3455555566689999999999876    588999999999999999999988887543  2457777777778888999


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccc
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTI  172 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (285)
                      +++|++|+||||+|++||++|+++|+++.++..+..+.     .|  .++|+...  .                      
T Consensus       454 ~~~~llgl~w~r~~~~ga~~g~i~G~~~~~~~~~~~~~-----~~--~~~~~~~~--~----------------------  502 (552)
T TIGR03648       454 FPALVLGIFWKRMNREGAIAGMLTGLGFTFSYIVYFKP-----WG--FIGTNPGA--N----------------------  502 (552)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhccc-----cc--cccccccc--c----------------------
Confidence            99999999999999999999999999987765443211     01  12342100  0                      


Q ss_pred             ccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973         173 RYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT  216 (285)
Q Consensus       173 ~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~  216 (285)
                            .   ....++.++...++++|..+++++++++|+++++
T Consensus       503 ------~---~~~~~~~~~~~~~~~i~~~v~~~v~~~vS~~t~~  537 (552)
T TIGR03648       503 ------V---PENWWFGISPEGIGLIGMPVNFAVAIVVSLVTPP  537 (552)
T ss_pred             ------C---CccccccCCcccchHHHHHHHHHHheeeecCCCC
Confidence                  0   0113566778889999999999999999999843

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=99.56  E-value=5e-14  Score=140.30  Aligned_cols=101  Identities=15%  Similarity=0.217  Sum_probs=78.0

Q ss_pred             hhHHH--HHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhH
Q psy3973          16 KSADQ--ELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY-LGSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        16 sS~ds--ns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~-~g~vl~~~~si~g~~~Gpl   92 (285)
                      ||+||  |+.|+++++|+||++.+    ++.+|++.++++|+.++++|++++.+|+.... +..++..++...+   +.+
T Consensus       340 ST~~s~l~a~ss~~~~Diy~~~~~----~~~s~~~~l~~~Ri~~v~~~~~a~~~a~~~~~~i~~l~~~~~~~~~---~~~  412 (502)
T PRK15419        340 STLSCQLLVCSSAITEDLYKAFLR----KHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFG---AAF  412 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHH---HHH
Confidence            44455  55578999999999876    58999999999999999999999988865433 2344444444432   333


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHHHHHHHH
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSL  123 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~w  123 (285)
                      ..+|++|+||||+|++||++|+++|+++.++
T Consensus       413 ~p~~llgl~wkr~t~~ga~~g~i~G~~~~~~  443 (502)
T PRK15419        413 GPVVLFSVMWSRMTRNGALAGMIIGALTVIV  443 (502)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            3357899999999999999999999987643

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=99.53  E-value=1.3e-13  Score=136.75  Aligned_cols=102  Identities=15%  Similarity=0.225  Sum_probs=79.7

Q ss_pred             cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973          14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL   93 (285)
Q Consensus        14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll   93 (285)
                      +|.|+..|+.|+++++|+||++.+    ++.+|||.++++|+.++++|++++++|+....  .+++......+.+++.+.
T Consensus       333 ST~~s~l~s~ss~~~~Diy~~~~~----~~~s~~~~l~v~R~~~v~~~~~~~~~a~~~~~--~i~~l~~~~~~~~~~~~~  406 (487)
T TIGR02121       333 STISSQLLVSSSALTEDFYKAFFK----REASQKELVMVGRLSVLVIAIIAIILAMNPNS--SILNLVGYAWAGFGAAFG  406 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHH
Confidence            444555555678999999999876    68999999999999999999999998875432  234333222233456666


Q ss_pred             HHHhhhhccccCChhhHHHHHHHHHHHH
Q psy3973          94 GVFTLGMTVTFANQQGALAGIVSGLLFC  121 (285)
Q Consensus        94 gvFlLGlf~kran~~GAl~G~i~G~lv~  121 (285)
                      .+|++|+||||+|++||++|+++|+++.
T Consensus       407 p~~llgl~w~r~t~~ga~~g~i~G~~~~  434 (487)
T TIGR02121       407 PVVLFSLYWKRMTRNGALAGMIIGAVTV  434 (487)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999875

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>PRK12488 acetate permease; Provisional

Probab=99.52  E-value=1.7e-13  Score=138.22  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhh
Q psy3973          19 DQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTL   98 (285)
Q Consensus        19 dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlL   98 (285)
                      -.++.|+.+++|+|+++.+   +++.+|+|.++++|+.++++|++++++|+..... .+.++.....++.+++++.+|++
T Consensus       374 ~lls~st~is~Diy~~~~~---~~~~s~~~~l~v~Ri~~vvvgv~a~~~a~~~~~~-~i~~l~~~~~~~~a~~~~p~lll  449 (549)
T PRK12488        374 LALSGASAVSHDLYACVIR---KGQASEAQEMRVSKIATLGIGLLAVVLGLMFESQ-NIAFLSGLVLAIAASVNFPVLFL  449 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcC---CCCCChHHhhHHHHHHHHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345578999999998764   1478999999999999999999999999865431 23333333345556777778999


Q ss_pred             hhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973          99 GMTVTFANQQGALAGIVSGLLFCSLVG  125 (285)
Q Consensus        99 Glf~kran~~GAl~G~i~G~lv~~wv~  125 (285)
                      |+||||+|++||++|+++|+++.+++.
T Consensus       450 gl~wkr~t~~ga~ag~i~G~~~~~~~~  476 (549)
T PRK12488        450 SMFWKGLTTRGAVAGSYAGLVSAVVLV  476 (549)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998876544

>PRK09395 actP acetate permease; Provisional

Probab=99.51  E-value=1.9e-13  Score=137.76  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhHHHH
Q psy3973          18 ADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY--LGSVLQASLTIFGVVGGPVLGV   95 (285)
Q Consensus        18 ~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~--~g~vl~~~~si~g~~~Gpllgv   95 (285)
                      ...++.|+++++|+|+++.+   +++.+|++.++++|+.++++|++++++|+....  +..+++..++   +.++.++.+
T Consensus       375 s~lla~st~~~~Diy~~~~~---~~~~s~~~~l~v~Ri~~v~igi~a~~~a~~~~~~~i~~~~~~~~~---~~~~~~~p~  448 (551)
T PRK09395        375 GLTLAGASAVSHDLYANVIK---KGKATERDELRVSKITTLVLGVVAIILGILFEKQNIAFMVGLAFA---IAASANFPV  448 (551)
T ss_pred             HHHHHHHHHHHHHHHHHhcc---CccccchhhhhHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHH---HHHHHHHHH
Confidence            33444578999999999874   136899999999999999999999999976432  2345555444   445556666


Q ss_pred             HhhhhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973          96 FTLGMTVTFANQQGALAGIVSGLLFCSLVG  125 (285)
Q Consensus        96 FlLGlf~kran~~GAl~G~i~G~lv~~wv~  125 (285)
                      +++|+||||+|++||++|+++|+++.++..
T Consensus       449 lllglfwkr~~~~gA~ag~i~G~~~~l~~~  478 (551)
T PRK09395        449 LLLSMYWKGLTTRGAVIGGWLGLISAVVLM  478 (551)
T ss_pred             HHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999876554

>COG4147 DhlC Predicted symporter [General function prediction only]

Probab=99.47  E-value=1.2e-13  Score=135.26  Aligned_cols=146  Identities=18%  Similarity=0.217  Sum_probs=114.2

Q ss_pred             HHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973          24 TAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPVLGVFTLGMTV  102 (285)
Q Consensus        24 Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~GpllgvFlLGlf~  102 (285)
                      |+.+++|+|.+.+|    ++++|||.++++|+.+++.|++++.++...+.. -.++.+++++..-...|.+   +||+||
T Consensus       368 asavsHDiY~~vik----~~ase~~~v~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvi---vlglfW  440 (529)
T COG4147         368 ASAVSHDLYAMVIK----KGATEKKEVRVARIAVVILGVVAILLGILPPGNVAFLVALAFALAASANFPVI---VLGLFW  440 (529)
T ss_pred             HHHHHhHHHHHHhC----CCCCccceehhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHHHcccchh---hHHHHH
Confidence            68899999999988    679999999999999999999999999888753 5666677777666666655   999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCcccccccccccccCCCCcc
Q psy3973         103 TFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQD  182 (285)
Q Consensus       103 kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (285)
                      ||.|.+||++|++.|+++.+...+.+..-.....                                            +.
T Consensus       441 Kr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~--------------------------------------------~~  476 (529)
T COG4147         441 KRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVIL--------------------------------------------GH  476 (529)
T ss_pred             hhccHHhHHHHHHHHHHHHHHHHHhCcccccccc--------------------------------------------Cc
Confidence            9999999999999999998877765421000000                                            00


Q ss_pred             chhhccccchhHHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy3973         183 QYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYD  220 (285)
Q Consensus       183 ~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~~~~d  220 (285)
                      ..+.+..+++-.-+++|..+.+++.+++|+++++++-|
T Consensus       477 ~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~~~~~~  514 (529)
T COG4147         477 PGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTKPPEED  514 (529)
T ss_pred             cccccccCCCCCcchhhhhHHHHHhHheeccCCCCchH
Confidence            12334556777778899999999999999999655444

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=99.42  E-value=2.6e-12  Score=127.26  Aligned_cols=105  Identities=23%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             hhHHHHH--HHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973          16 KSADQEL--ETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL   93 (285)
Q Consensus        16 sS~dsns--~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll   93 (285)
                      ||+|+.+  .|+++++|+|+++.|   +++.+||+.++++|+.++++|++++++|+...+.  +.....-..+...++++
T Consensus       334 ST~~s~l~~~ss~~~~Di~~~~~~---~~~~s~~~~~~v~r~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~  408 (483)
T PRK09442        334 STVDSQLLQSSSTIIKDLYLNIRP---DQIANEKKLKRISLIITLILGLLVLLAALKPPDM--IIWLNLFAFGGLEAVFL  408 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhCCchH--HHHHHHHHHHHHHHHHH
Confidence            4555544  468899999999554   0127999999999999999999999999765432  12111111223456677


Q ss_pred             HHHhhhhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973          94 GVFTLGMTVTFANQQGALAGIVSGLLFCSLVG  125 (285)
Q Consensus        94 gvFlLGlf~kran~~GAl~G~i~G~lv~~wv~  125 (285)
                      .++++|+||||.|++||++|+++|+++.++..
T Consensus       409 ~p~~lgl~w~r~~~~ga~~~~i~G~~~~~~~~  440 (483)
T PRK09442        409 WPIVLGLYWERANATGALASMIVGLVSYLLLA  440 (483)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999999999999998865543

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=99.41  E-value=1.4e-12  Score=131.64  Aligned_cols=99  Identities=14%  Similarity=0.217  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhHHHHHhh
Q psy3973          21 ELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY--LGSVLQASLTIFGVVGGPVLGVFTL   98 (285)
Q Consensus        21 ns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~--~g~vl~~~~si~g~~~GpllgvFlL   98 (285)
                      |+.|+.+++|+|+++.+   +++.+|++.++++|+.++++|++++++|+....  +..+++.+++   +.+++++.+|++
T Consensus       376 ~a~st~i~~Diy~~~~~---~~~~s~~~~~~v~Ri~~vv~g~ia~~~a~~~~~~~i~~l~~~~~~---~~a~~~~p~lll  449 (549)
T TIGR02711       376 LAGASAVSHDLYANVIK---KGKATERDELRVSKITVLILGVIAIGLGILFENQNIAFMVGLAFS---IAASCNFPIILL  449 (549)
T ss_pred             HHHHHHHHHHHHHHhcC---CCCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HHHHHHHHHHHH
Confidence            44578999999999874   146899999999999999999999999987543  2344444444   444556666899


Q ss_pred             hhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973          99 GMTVTFANQQGALAGIVSGLLFCSLVG  125 (285)
Q Consensus        99 Glf~kran~~GAl~G~i~G~lv~~wv~  125 (285)
                      |+||||+|++||++|+++|+++.+...
T Consensus       450 gl~Wkr~n~~GA~ag~i~G~~~~~~~~  476 (549)
T TIGR02711       450 SMYWSKLTTRGAMIGGWLGLITAVVLM  476 (549)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998866544

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=99.37  E-value=8.2e-12  Score=124.55  Aligned_cols=143  Identities=22%  Similarity=0.332  Sum_probs=108.6

Q ss_pred             cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhH
Q psy3973          14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~Gpl   92 (285)
                      ++-|+..++.|+++++|+||++.|    ++++||+.++++|+.+++++++++++++..... ..+..+.+..   +++|+
T Consensus       340 St~ss~ll~~ss~~t~Diyk~~~~----~~a~~k~l~~i~r~~v~vi~~~a~~~a~~~~~~i~~l~~~~~~g---~~a~~  412 (493)
T COG0591         340 STASSQLLVASSAITRDIYKRFLR----KNASEKELVRIGRVVVLVIALLALLLALLPPSSILGLVSLALAG---FGAQF  412 (493)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhC----CCCChhHhhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH---HHHHH
Confidence            344555555679999999999988    589999999999999999999999877776544 3455555544   34488


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHHHHHHHHH--hhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccc
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLV--GFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDAT  170 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv--~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (285)
                      ++.+++|+||||+|++|++.|+++|+++.++.  ......                                        
T Consensus       413 ~p~~~~~L~wkr~t~~ga~agmi~G~i~~~~~~~~~~~~~----------------------------------------  452 (493)
T COG0591         413 LPALLLGLFWKRATKRGAIAGMIAGLIVVLLTWLLFLKSF----------------------------------------  452 (493)
T ss_pred             HHHHhheeeeccchHhHHHHHHHHHHHHHHHHHHhhcCcc----------------------------------------
Confidence            88899999999999999999999999986553  211100                                        


Q ss_pred             ccccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973         171 TIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT  216 (285)
Q Consensus       171 ~~~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~  216 (285)
                                +...+   ....+|-.+.+++++.++..++|+++++
T Consensus       453 ----------~~~~~---~~~~~~~~v~~fiv~~~~~~~~sl~~~~  485 (493)
T COG0591         453 ----------PYGAF---ALGGLYEVVPGFIVNLLVTVVVSLLTKA  485 (493)
T ss_pred             ----------ccchh---cchhHHHHHHHHHHHHHHHHhhcccCCC
Confidence                      00001   3556777889999999999999999844

>TIGR02119 panF sodium/pantothenate symporter

Probab=99.35  E-value=1.3e-11  Score=121.77  Aligned_cols=105  Identities=18%  Similarity=0.177  Sum_probs=78.3

Q ss_pred             cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973          14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL   93 (285)
Q Consensus        14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll   93 (285)
                      ++.++..|+.|+++++|+||++.+    |+.+|++.++++|+.++++|++++++|+........+. ... .+...++.+
T Consensus       333 ST~~s~l~~~ss~~~~Diy~~~~~----~~~~~~~~~~~~r~~~~~~g~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~  406 (471)
T TIGR02119       333 STVNSLLLQSSSTIIKDLYLNYIP----KEAKESKIKKISMCITLIIGLLVIIAAIKPPDLIIWLN-LFA-FGGLEAAFI  406 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC----CCCChHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH-HHH-HHHHHHHHH
Confidence            344444455678999999999987    58899999999999999999999888875443211111 111 223345566


Q ss_pred             HHHhhhhccccCChhhHHHHHHHHHHHHHHH
Q psy3973          94 GVFTLGMTVTFANQQGALAGIVSGLLFCSLV  124 (285)
Q Consensus        94 gvFlLGlf~kran~~GAl~G~i~G~lv~~wv  124 (285)
                      .++++|+||||+|++||++|+++|++..+..
T Consensus       407 ~plllgl~w~r~t~~ga~~~~i~G~~~~~~~  437 (471)
T TIGR02119       407 WPIVLGLYWKRANATGALASMIVGVGSYITL  437 (471)
T ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH
Confidence            6679999999999999999999998875443

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=99.34  E-value=2.4e-12  Score=124.03  Aligned_cols=97  Identities=23%  Similarity=0.427  Sum_probs=76.8

Q ss_pred             hhHHHHHH--HHHHHHHhhhcccCCCCCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q psy3973          16 KSADQELE--TAELSLSHCQPLYSYSTNRT-ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        16 sS~dsns~--Sav~~~D~yk~~~~~~~~~~-~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpl   92 (285)
                      ||+|+.++  |+.+++|+|++++|    ++ .+|++.++++|+.++++|++++.+++.....+ +++......+.+.+++
T Consensus       307 ST~~s~l~a~ss~~~~Di~~~~~~----~~~~s~~~~~~~~ri~~~v~~~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~  381 (406)
T PF00474_consen  307 STADSLLLAISSIFSRDIYKPFIK----PNSASEKQLLRVSRIAIVVIGIIAILLALFFPDSG-IIDLILFAFGILAAPF  381 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCC-----SS-S-SSHHHHHHHHHHHHHHHHHHHHGGGGGGSS-HHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHhhhhhhhhHHhhhcccc----ccccchhhhhhccceeEEeeHHhHHHHHhccccch-HHHHHHHHHHHHHHHH
Confidence            55555554  68999999999887    35 89999999999999999999988887665433 7777777778888999


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHH
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSG  117 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G  117 (285)
                      ++++++|+||||+|++||++|+++|
T Consensus       382 ~~~~~~gl~wkr~t~~ga~~~~i~G  406 (406)
T PF00474_consen  382 FPPLLLGLYWKRATKRGAIAGMIVG  406 (406)
T ss_dssp             HHHHHHHHH-TT--HHHHHHHHH--
T ss_pred             HHHHHHhhccCCCCHHHHhhheeeC
Confidence            9999999999999999999999987

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>TIGR00813 sss transporter, SSS family

Probab=99.21  E-value=3.9e-11  Score=116.08  Aligned_cols=96  Identities=24%  Similarity=0.388  Sum_probs=79.9

Q ss_pred             hhHHHHH--HHHHHHHHhhhcccCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q psy3973          16 KSADQEL--ETAELSLSHCQPLYSYSTNRTIS-DRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        16 sS~dsns--~Sav~~~D~yk~~~~~~~~~~~s-e~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpl   92 (285)
                      |++|+.+  .|+++++|+||++.+    |+.+ |++.++++|+.++++++++++++..  ..+++++......+..++++
T Consensus       309 ST~~s~l~a~ss~~~~Di~~~~~~----~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~~~~  382 (407)
T TIGR00813       309 STLSSQLNSASTVFTMDLYKKIIR----PNASGEKKIVMRGRIAVLVAAVIAGFVAAA--QGGQVLQYVQEAFGGLGAPF  382 (407)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHhcC----CccchhhhhhHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHhcchH
Confidence            4455544  468999999999877    4666 8889999999999999999875433  23567777777788889999


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHH
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSG  117 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G  117 (285)
                      ++++++|+||||+|++||++|+++|
T Consensus       383 ~~pl~lgl~w~r~~~~ga~~~~i~G  407 (407)
T TIGR00813       383 LPVFLLGIFWKRMNAKGALAGMIAG  407 (407)
T ss_pred             HHHHHHHHhcCcCChHhHHHHhhcC
Confidence            9999999999999999999999876

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>COG4146 Predicted symporter [General function prediction only]

Probab=98.92  E-value=3.6e-09  Score=101.61  Aligned_cols=139  Identities=9%  Similarity=0.187  Sum_probs=118.3

Q ss_pred             cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhH
Q psy3973          14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPV   92 (285)
Q Consensus        14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~Gpl   92 (285)
                      ++=....||.++.++.|+|+|.++    ++++|+|++.++|.+..+.+++++.+|+....- ++++.+...+.|+..-|+
T Consensus       343 StFN~fLNSa~Tlf~~diy~~I~k----~na~e~eLv~~grkf~a~~Ai~sv~iaP~i~~apqGly~~~k~~nGfynvPi  418 (571)
T COG4146         343 STFNGFLNSASTLFSMDIYRRIIK----QNAEEQELVTVGRKFGAFIAIVSVLIAPWIANAPQGLYSWMKQLNGFYNVPI  418 (571)
T ss_pred             HHHHHHhhhhhHHhhhhhhhHhhc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcccchh
Confidence            344556788889999999999988    799999999999999999999999999998776 789999999999999999


Q ss_pred             HHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccc
Q psy3973          93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTI  172 (285)
Q Consensus        93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (285)
                      .++++.|+|.||+.+.+|-+.+..+++.  |..+                                              
T Consensus       419 va~~ivGfF~k~vpalAakva~~ihvil--Y~~i----------------------------------------------  450 (571)
T COG4146         419 VAIIIVGFFFKRVPALAAKVAMGIHVIL--YITI----------------------------------------------  450 (571)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHhhhee--EeeE----------------------------------------------
Confidence            9999999999999999999888877654  1110                                              


Q ss_pred             ccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhcc
Q psy3973         173 RYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFF  214 (285)
Q Consensus       173 ~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt  214 (285)
                                ..-..++++|+|.-..-|++.++|.+++.++-
T Consensus       451 ----------~~vv~~~vnFlYVla~lF~inVvVMLviGflK  482 (571)
T COG4146         451 ----------NYVVKFDVNFLYVLACLFCINVVVMLVIGFLK  482 (571)
T ss_pred             ----------EEEEEEEeeeehhHHHHHHHHhHHHHhhhccc
Confidence                      00123578999999999999999999999664

>KOG2348|consensus

Probab=98.62  E-value=5.9e-09  Score=102.08  Aligned_cols=106  Identities=19%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHH
Q psy3973          16 KSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGV   95 (285)
Q Consensus        16 sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpllgv   95 (285)
                      .|+.....|++++.|+||.|++    +++|.||++++++..++++|+.+-++|....+.|--+.+....+|+.-||..-.
T Consensus       366 ~SaELIAvSSvfTYDIYr~Yi~----PrAsGkell~~sh~avi~Fg~~M~~~av~l~y~gismg~iy~~mGili~~AV~p  441 (667)
T KOG2348|consen  366 TSAELIAVSSVFTYDIYRNYIR----PRASGKELLYTSHVAVIIFGVAMGGLAVGLNYGGISMGWIYLFMGILIGPAVFP  441 (667)
T ss_pred             cchhheeehhhhehHHHHhhcC----CccCcceeEEEeeeeeehhHHHHHhHhhhhhhcceeHHHHHHHHHHHhcchhHh
Confidence            3445555589999999999988    799999999999999999999998888887766655667777888999998888


Q ss_pred             HhhhhccccCChhhHHHHHHHHHHH--HHHHh
Q psy3973          96 FTLGMTVTFANQQGALAGIVSGLLF--CSLVG  125 (285)
Q Consensus        96 FlLGlf~kran~~GAl~G~i~G~lv--~~wv~  125 (285)
                      ..+-++|+|+|..||.+|-..|.+.  +.|+.
T Consensus       442 it~~l~~kkmn~~~~iv~~~lG~i~~IitWl~  473 (667)
T KOG2348|consen  442 ITLTLLWKKMNKYGAIVGPPLGSITGIITWLV  473 (667)
T ss_pred             HHHHHHHHHhhhhhEeecCcccchhhhhhhhh
Confidence            8999999999999999998888765  45654

>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]

Probab=98.25  E-value=3.2e-06  Score=81.61  Aligned_cols=101  Identities=23%  Similarity=0.318  Sum_probs=76.6

Q ss_pred             hhHHHHHH--HHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973          16 KSADQELE--TAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL   93 (285)
Q Consensus        16 sS~dsns~--Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll   93 (285)
                      |++||++.  |+++..|+|.....    +..+|++..+++++.++++|.+-+..|+-...+  +.+.-.--.|..-...+
T Consensus       332 STIds~L~~~sstliKdLy~~~~~----~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~~--iiwlnlfAfggle~~Fl  405 (473)
T COG4145         332 STINSQLLQSSSTLIKDLYLNVRD----KLKNERKIKRISMIATLIFGALLLIAALNPPEM--IIWLNLFAFGGLEAVFL  405 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHhhCCcce--eeeeehhhhcchhhHHH
Confidence            78899886  78999999998763    377999999999999999999988888766543  11111111122233445


Q ss_pred             HHHhhhhccccCChhhHHHHHHHHHHHHH
Q psy3973          94 GVFTLGMTVTFANQQGALAGIVSGLLFCS  122 (285)
Q Consensus        94 gvFlLGlf~kran~~GAl~G~i~G~lv~~  122 (285)
                      -+.++|++|.++|+.||++.|++|++...
T Consensus       406 ~plvlgLYw~kaNa~ga~aSMi~g~~~y~  434 (473)
T COG4145         406 WPLVLGLYWEKANAAGALASMIVGLVLYV  434 (473)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            55689999999999999999999998843

>KOG3761|consensus

Probab=98.14  E-value=4.8e-07  Score=86.20  Aligned_cols=98  Identities=20%  Similarity=0.225  Sum_probs=79.9

Q ss_pred             hhHHHHHHH--HHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973          16 KSADQELET--AELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL   93 (285)
Q Consensus        16 sS~dsns~S--av~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll   93 (285)
                      ||+||..+|  +.+.+++||--+|    +++|||+.++++|+.++.+|+.++.||++...+-+++-+.   ..+.+--++
T Consensus       356 ssadssilsaasmfa~ni~kls~r----~~asdkeii~vmriai~~~g~~at~mal~~ksiyglwyl~---adlvyiiif  428 (591)
T KOG3761|consen  356 SSADSSILSAASMFAHNIWKLSFR----PHASDKEIIIVMRIAIFCFGAMATAMALLIKSIYGLWYLC---ADLVYIIIF  428 (591)
T ss_pred             hccchHhhhHHHHHhhhhheeeec----cCCCCceEEEEEEehhhhhhHHHHHHHHHHHHHHHHHHHh---hceeEeEec
Confidence            678887664  6789999997666    6999999999999999999999999999987655544433   344555566


Q ss_pred             HHHhhhhccccCChhhHHHHHHHHHHH
Q psy3973          94 GVFTLGMTVTFANQQGALAGIVSGLLF  120 (285)
Q Consensus        94 gvFlLGlf~kran~~GAl~G~i~G~lv  120 (285)
                      .-.+.-+|.|+.|..|+++|-..|+.+
T Consensus       429 pqllcvl~m~~sntygalagy~~gl~l  455 (591)
T KOG3761|consen  429 PQLLCVLFMKGSNTYGALAGYASGLFL  455 (591)
T ss_pred             cceeeEEEecCCCcchhhhhhheeeEE
Confidence            666888899999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	5e-15
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	1e-12

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593

 Score = 73.7 bits (181), Expect = 5e-15
 Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 17/196 (8%)

Query: 35  LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
           +Y    +    D +   + +    +  ++   IA +   +G   Q      G+V   +L 
Sbjct: 381 IYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILA 440

Query: 95  VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSIL 154
           VF LG+       +GA+ G+V+ + F   + F                   +V + +S+ 
Sbjct: 441 VFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLS 500

Query: 155 RLDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFF 214
              N  D   I   ++                    +   + +  + + +++  + + F+
Sbjct: 501 TSINDDDPKGISVTSSMFV-----------------TDRSFNIAAYGIMIVLAVLYTLFW 543

Query: 215 DTPSYDVNLLTPWVAA 230
                ++ L+   V A
Sbjct: 544 VNADAEITLIIFGVMA 559

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 19/95 (20%), Positives = 38/95 (40%)

Query: 35  LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
           +Y    +    D +   + +    +  ++   IA +   +G   Q      G+V   +L 
Sbjct: 352 IYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILA 411

Query: 95  VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGP 129
           VF LG+       +GA+ G+V+ + F   + F   
Sbjct: 412 VFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPL 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	99.79
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	99.72
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	84.11

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=99.79  E-value=7.3e-19  Score=174.35  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=120.2

Q ss_pred             cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973          14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL   93 (285)
Q Consensus        14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll   93 (285)
                      +|.|+..|+.|+++++|+||++.+    |+++|||.++++|+.+++++++++++|+.....+.++++.+.+.|++++|++
T Consensus       335 ST~ss~l~s~st~~~~Diy~~~~~----~~~s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~  410 (530)
T 3dh4_A          335 SSLASMLNSTATIFTMDIYKEYIS----PDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGIL  410 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCC----SCSCSSHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHhHHHHHhHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHH
Confidence            344555556679999999999866    5899999999999999999999999997766667788889999999999999


Q ss_pred             HHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCcccccccccc
Q psy3973          94 GVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIR  173 (285)
Q Consensus        94 gvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (285)
                      ++|++|+||||+|++||++|+++|+++.++..+..                                             
T Consensus       411 ~~~llgl~wkr~~~~gA~~g~i~G~~~~~~~~~~~---------------------------------------------  445 (530)
T 3dh4_A          411 AVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMP---------------------------------------------  445 (530)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHTSS---------------------------------------------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHc---------------------------------------------
Confidence            99999999999999999999999999977653210                                             


Q ss_pred             cccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973         174 YTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT  216 (285)
Q Consensus       174 ~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~  216 (285)
                                    ..++++|...+++++++++.+++|+++++
T Consensus       446 --------------~~~~~~~~~~~~~~~~~i~~v~vSl~t~~  474 (530)
T 3dh4_A          446 --------------LSMPFMDQMLYTLLFTMVVIAFTSLSTSI  474 (530)
T ss_dssp             --------------SCCCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             --------------CCccHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence                          02457899999999999999999999933

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=99.72  E-value=4.5e-17  Score=163.48  Aligned_cols=138  Identities=19%  Similarity=0.239  Sum_probs=116.8

Q ss_pred             chhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHH
Q psy3973          15 SKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG   94 (285)
Q Consensus        15 ~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpllg   94 (285)
                      |.|+..|+.|+++++|+|+++.+    |+++||+.++++|+.++++|++++++|+.....++++++.+.+.|++++|+++
T Consensus       365 T~~s~l~a~st~~~~Diy~~~~~----~~~s~~~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~  440 (593)
T 2xq2_A          365 SLASMLNSTATIFTMDIYKEYIS----PDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILA  440 (593)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTC----SCCCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHH
Confidence            33444555679999999999876    58999999999999999999999999987665567888888888999999999


Q ss_pred             HHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccccc
Q psy3973          95 VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRY  174 (285)
Q Consensus        95 vFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (285)
                      +|++|+||||+|++||++|+++|+++.++..+..                                              
T Consensus       441 ~~llglfwkr~~~~gA~~g~i~G~~~~~~~~~~~----------------------------------------------  474 (593)
T 2xq2_A          441 VFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMP----------------------------------------------  474 (593)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHSS----------------------------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHc----------------------------------------------
Confidence            9999999999999999999999999876553210                                              


Q ss_pred             ccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccC
Q psy3973         175 TDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFD  215 (285)
Q Consensus       175 ~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~  215 (285)
                                   ..++++|...+++++++++.+++|++++
T Consensus       475 -------------~~~~~~~~~~~~~~~~~iv~v~vSl~t~  502 (593)
T 2xq2_A          475 -------------LSMPFMDQMLYTLLFTMVVIAFTSLSTS  502 (593)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -------------CCccHHHHHHHHHHHHHHHHHhheeecC
Confidence                         0134677888999999999999999993

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=84.11  E-value=4.1  Score=39.45  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973          55 VLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV  102 (285)
Q Consensus        55 i~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~  102 (285)
                      ..+++.+++++++++..  ..+.++-++.+.|++.+|+.|+.+.-.|.
T Consensus       338 ~~~~i~~vi~~~i~~~~--~~~~f~~FL~~lg~~l~P~~gI~l~Dy~i  383 (501)
T 2jln_A          338 TGVIVSAVVGLLMMPWQ--FAGVLNTFLNLLASALGPLAGIMISDYFL  383 (501)
T ss_dssp             HHHHHHHHHHHHTCGGG--THHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556677666665543  23567777788889999999999888764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00