Psyllid ID: psy3981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
FVILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDDKA
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHccccEEcccccHHHHHHcccccccccccccccccccccccccccccccEEEEcccccc
cEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEccccEEEEEEcccHHHHHHHHHccccEEEEEEEcccccccEEEcccccccc
fvilyvpegnltacgtdyltkdwhhrsYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVAtlrsgdqsgtsAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIryqyppmhplwYQALGLTMICLGTMSMVGNGIVVYIFLCtknlrtpsniLVVNLAFSDfcmmfsmapTMVLNCFYEtwtlgpfmcelygmlghpkfrqaldkkfpslvcgtvesdsssaasvqtnvtddka
FVilyvpegnltACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMnvatlrsgdqsgtsAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCGTVesdsssaasvqtnvtddka
FVILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDDKA
*VILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH**************************EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCGT********************
FVILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHE***************************KLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPS*************************
FVILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCG*********************
FVILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK*N*ATLR*****GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCGTVES*****************
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FVILYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYGMLGHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDDKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q95YI3381 Ceropsin OS=Bombyx mori G N/A N/A 0.543 0.393 0.711 6e-60
Q17296378 Rhodopsin OS=Cataglyphis N/A N/A 0.543 0.396 0.711 2e-59
Q94741381 Opsin-1 OS=Schistocerca g N/A N/A 0.543 0.393 0.698 6e-59
Q17292378 Rhodopsin OS=Camponotus a N/A N/A 0.543 0.396 0.698 2e-58
O02464377 Opsin-1 OS=Manduca sexta N/A N/A 0.543 0.397 0.692 3e-58
P35362376 Rhodopsin OS=Sphodromanti N/A N/A 0.543 0.398 0.692 1e-56
Q17053377 Rhodopsin, long-wavelengt yes N/A 0.543 0.397 0.685 4e-56
P28678373 Opsin Rh1 OS=Drosophila p yes N/A 0.565 0.418 0.617 1e-51
P06002373 Opsin Rh1 OS=Drosophila m yes N/A 0.565 0.418 0.611 3e-51
O01668369 Opsin Rh6 OS=Drosophila m no N/A 0.572 0.428 0.6 2e-50
>sp|Q95YI3|OPSCE_BOMMO Ceropsin OS=Bombyx mori GN=Bcop PE=1 SV=1 Back     alignment and function desciption
 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 127/156 (81%), Gaps = 6/156 (3%)

Query: 5   YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
           YVPEGN+TACGTDYLTKDW  RSY++ Y  FVYF PL+LI+Y+YY+IV+AVS HEK MRE
Sbjct: 199 YVPEGNMTACGTDYLTKDWFSRSYIVVYSVFVYFAPLLLIVYSYYYIVQAVSAHEKAMRE 258

Query: 65  QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLI 124
           QAKKMNVA+LRS + + TS E KLAKVALMTISLWF+AWTPYLVIN+ GILE   I+PL 
Sbjct: 259 QAKKMNVASLRSSEAANTSTECKLAKVALMTISLWFMAWTPYLVINYTGILESAPISPLA 318

Query: 125 TIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQAL 160
           TIWGS+FAKANAVYNPIVY I       HP +  AL
Sbjct: 319 TIWGSLFAKANAVYNPIVYGIS------HPKYQAAL 348
Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.
Bombyx mori (taxid: 7091)
>sp|Q17296|OPSD_CATBO Rhodopsin OS=Cataglyphis bombycina PE=2 SV=1 Back     alignment and function description
>sp|Q94741|OPS1_SCHGR Opsin-1 OS=Schistocerca gregaria GN=Lo1 PE=2 SV=1 Back     alignment and function description
>sp|Q17292|OPSD_CAMAT Rhodopsin OS=Camponotus atriceps PE=2 SV=1 Back     alignment and function description
>sp|O02464|OPS1_MANSE Opsin-1 OS=Manduca sexta GN=OP1 PE=1 SV=2 Back     alignment and function description
>sp|P35362|OPSD_SPHSP Rhodopsin OS=Sphodromantis sp. PE=2 SV=1 Back     alignment and function description
>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera PE=1 SV=1 Back     alignment and function description
>sp|P28678|OPS1_DROPS Opsin Rh1 OS=Drosophila pseudoobscura pseudoobscura GN=ninaE PE=1 SV=4 Back     alignment and function description
>sp|P06002|OPS1_DROME Opsin Rh1 OS=Drosophila melanogaster GN=ninaE PE=1 SV=1 Back     alignment and function description
>sp|O01668|OPS6_DROME Opsin Rh6 OS=Drosophila melanogaster GN=Rh6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
10441606 378 long-wavelength like opsin [Megoura vici 0.568 0.415 0.699 3e-60
193624882 377 PREDICTED: opsin-1-like [Acyrthosiphon p 0.568 0.416 0.699 7e-60
4959075341 rhodopsin [Papilio glaucus] 0.543 0.439 0.730 9e-60
188593535 381 long wave opsin [Athalia rosae] 0.543 0.393 0.705 8e-59
50981745 377 long wavelength-sensitive rhodopsin [Apo 0.543 0.397 0.711 3e-58
112983529 381 ceropsin [Bombyx mori] gi|75020335|sp|Q9 0.543 0.393 0.711 4e-58
29420459 381 anceropsin [Antheraea pernyi] 0.543 0.393 0.705 6e-58
115490648 380 long wavelength-sensitive opsin [Neomino 0.543 0.394 0.698 7e-58
2499368 378 RecName: Full=Rhodopsin gi|1323752|gb|AA 0.543 0.396 0.711 1e-57
40645081 382 piceropsin [Pieris rapae] gi|51534944|db 0.543 0.392 0.698 2e-57
>gi|10441606|gb|AAG17119.1| long-wavelength like opsin [Megoura viciae] Back     alignment and taxonomy information
 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 132/163 (80%), Gaps = 6/163 (3%)

Query: 5   YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
           YVPE N+TACGTDYLT  WH RSY++ Y  F Y++PL++IIYAYYFIV+AV+ HEK MRE
Sbjct: 195 YVPEANMTACGTDYLTLAWHSRSYVLVYAIFAYYLPLLVIIYAYYFIVKAVASHEKSMRE 254

Query: 65  QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLI 124
           QAKKMNV++LRSGDQS TSAE KLAKVALMTISLWF+AWTPY+VINF GI +++ I+PL 
Sbjct: 255 QAKKMNVSSLRSGDQSNTSAEFKLAKVALMTISLWFMAWTPYMVINFAGIFQLITIDPLF 314

Query: 125 TIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICL 167
           TIWGSVFAKANAVYNPIVYAI       HP +  AL     CL
Sbjct: 315 TIWGSVFAKANAVYNPIVYAIS------HPKYRLALDKKFPCL 351

Source: Megoura viciae

Species: Megoura viciae

Genus: Megoura

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193624882|ref|XP_001947730.1| PREDICTED: opsin-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|4959075|gb|AAD34224.1|AF077193_1 rhodopsin [Papilio glaucus] Back     alignment and taxonomy information
>gi|188593535|dbj|BAG32517.1| long wave opsin [Athalia rosae] Back     alignment and taxonomy information
>gi|50981745|gb|AAT91644.1| long wavelength-sensitive rhodopsin [Apodemia mormo] Back     alignment and taxonomy information
>gi|112983529|ref|NP_001036882.1| ceropsin [Bombyx mori] gi|75020335|sp|Q95YI3.1|OPSCE_BOMMO RecName: Full=Ceropsin; AltName: Full=Cerebral opsin; Short=Boceropsin gi|15216299|dbj|BAB63283.1| Boceropsin [Bombyx mori] gi|152061167|dbj|BAF73627.1| boceropsin [Bombyx mori] Back     alignment and taxonomy information
>gi|29420459|dbj|BAC66474.1| anceropsin [Antheraea pernyi] Back     alignment and taxonomy information
>gi|115490648|gb|ABI97876.1| long wavelength-sensitive opsin [Neominois ridingsii] Back     alignment and taxonomy information
>gi|2499368|sp|Q17296.1|OPSD_CATBO RecName: Full=Rhodopsin gi|1323752|gb|AAC47084.1| rhodopsin [Cataglyphis bombycinus] Back     alignment and taxonomy information
>gi|40645081|dbj|BAD06459.1| piceropsin [Pieris rapae] gi|51534944|dbj|BAD36899.1| opsin [Pieris rapae] gi|54633210|dbj|BAD66860.1| opsin [Pieris rapae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
FB|FBgn0002940373 ninaE "neither inactivation no 0.518 0.383 0.657 4.2e-55
FB|FBgn0003248381 Rh2 "Rhodopsin 2" [Drosophila 0.518 0.375 0.643 2.9e-52
FB|FBgn0019940369 Rh6 "Rhodopsin 6" [Drosophila 0.568 0.425 0.603 2.3e-48
FB|FBgn0014019382 Rh5 "Rhodopsin 5" [Drosophila 0.507 0.366 0.380 9.3e-24
FB|FBgn0003250378 Rh4 "Rhodopsin 4" [Drosophila 0.518 0.378 0.413 1.3e-22
FB|FBgn0003249383 Rh3 "Rhodopsin 3" [Drosophila 0.518 0.373 0.406 7.8e-22
UNIPROTKB|Q4R1I4 706 OPN4 "Melanopsin" [Branchiosto 0.510 0.199 0.398 9.4e-22
ZFIN|ZDB-GENE-070111-2 594 opn4a "opsin 4a (melanopsin)" 0.547 0.254 0.351 3.4e-21
UNIPROTKB|F1NEY8528 OPN4 "Uncharacterized protein" 0.579 0.303 0.366 1e-20
RGD|621701474 Opn4 "opsin 4" [Rattus norvegi 0.565 0.329 0.359 2.1e-20
FB|FBgn0002940 ninaE "neither inactivation nor afterpotential E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 509 (184.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 94/143 (65%), Positives = 114/143 (79%)

Query:     5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
             YVPEGNLT+CG DYL +DW+ RSYLIFY  FVY++PL LI Y+Y+FI+ AVS HEK MRE
Sbjct:   191 YVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMRE 250

Query:    65 QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLI 124
             QAKKMNV +LRS + +  SAE KLAKVAL+TI+LWF+AWTPYLVIN  G+ +   + PL 
Sbjct:   251 QAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEGLTPLN 310

Query:   125 TIWGSVFAKANAVYNPIVYAIRY 147
             TIWG+ FAK+ A YNPIVY I +
Sbjct:   311 TIWGACFAKSAACYNPIVYGISH 333
GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS
GO:0007602 "phototransduction" evidence=ISS;IMP;NAS
GO:0016028 "rhabdomere" evidence=IDA
GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA
GO:0005791 "rough endoplasmic reticulum" evidence=IDA
GO:0005771 "multivesicular body" evidence=IDA
GO:0016029 "subrhabdomeral cisterna" evidence=IDA
GO:0005767 "secondary lysosome" evidence=IDA
GO:0016027 "inaD signaling complex" evidence=TAS;IPI
GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP
GO:0004930 "G-protein coupled receptor activity" evidence=IEA;NAS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0042052 "rhabdomere development" evidence=IMP
GO:0007601 "visual perception" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP
GO:0009642 "response to light intensity" evidence=IMP
GO:0008344 "adult locomotory behavior" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0043052 "thermotaxis" evidence=IMP
FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0019940 Rh6 "Rhodopsin 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070111-2 opn4a "opsin 4a (melanopsin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEY8 OPN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621701 Opn4 "opsin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q17053OPSD_APIMENo assigned EC number0.68580.54340.3978yesN/A
P28678OPS1_DROPSNo assigned EC number0.61720.56520.4182yesN/A
P06002OPS1_DROMENo assigned EC number0.61110.56520.4182yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-18
pfam00001 251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 1e-08
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 0.001
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 6   VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 65
           V EGN+T C  D+  +    RSY +      + +PL++I+  Y  I+R +    +    Q
Sbjct: 122 VEEGNVTTCLIDFPEESTK-RSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180

Query: 66  AKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINF---GGILEMVEINP 122
           A+    +          S E K AK+ L+ + ++ L W PY ++        L +  + P
Sbjct: 181 ARAKRSS----------SKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLP 230

Query: 123 LITIWGSVFAKANAVYNPIVY 143
              +     A  N+  NPI+Y
Sbjct: 231 TALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG4219|consensus423 99.74
PHA03234338 DNA packaging protein UL33; Provisional 99.74
PHA03235409 DNA packaging protein UL33; Provisional 99.68
PHA02834323 chemokine receptor-like protein; Provisional 99.64
KOG4219|consensus 423 99.62
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.6
PHA02638417 CC chemokine receptor-like protein; Provisional 99.59
KOG4220|consensus503 99.54
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.5
PHA03234 338 DNA packaging protein UL33; Provisional 99.44
KOG4220|consensus 503 99.43
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.36
PHA02834 323 chemokine receptor-like protein; Provisional 99.28
PHA03087 335 G protein-coupled chemokine receptor-like protein; 99.12
PHA03235 409 DNA packaging protein UL33; Provisional 99.08
PF00001 257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.02
PF10320 257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 98.54
KOG2087|consensus363 98.33
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 97.67
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 97.43
KOG2087|consensus 363 97.37
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 96.25
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 96.23
PF10328 274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 95.6
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 95.43
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 95.3
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 95.1
PF10324 318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 94.84
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 94.76
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 93.98
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 93.83
PF05296 303 TAS2R: Mammalian taste receptor protein (TAS2R); I 93.67
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 90.95
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 90.34
PF11710201 Git3: G protein-coupled glucose receptor regulatin 87.66
PF03402 265 V1R: Vomeronasal organ pheromone receptor family, 87.34
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 86.21
>KOG4219|consensus Back     alignment and domain information 
Probab=99.74  E-value=2.6e-18  Score=149.28  Aligned_cols=130  Identities=18%  Similarity=0.299  Sum_probs=102.2

Q ss_pred             ceeeeecccCC--C-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCch
Q psy3981          11 LTACGTDYLTK--D-----WHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS   83 (276)
Q Consensus        11 ~~~C~~~~~~~--~-----~~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (276)
                      ...|...|+++  .     ...+.|.....++.+++|++++..+|.+|.+.+|+.+....+          +.+..++.+
T Consensus       185 ~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~----------~d~~~~~~k  254 (423)
T KOG4219|consen  185 RVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQ----------QDRKHEQLK  254 (423)
T ss_pred             eEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccch----------hchhhHHHH
Confidence            56788877664  1     112347888889999999999999999999999975421111          112345678


Q ss_pred             hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhcc----ccccHHHHHHHHhhcccCccccccccccccCCC
Q psy3981          84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIWGSVFAKANAVYNPIVYAIRYQYP  150 (276)
Q Consensus        84 ~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~----~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~  150 (276)
                      +++|+.||+.+|++.|.+||+|||+..++....+    ......++....||+.+|+|+||+||++.|+..
T Consensus       255 ak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rf  325 (423)
T KOG4219|consen  255 AKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRF  325 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHH
Confidence            8999999999999999999999999999886543    235667888999999999999999999998653

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4219|consensus Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 1e-21
2ziy_A 372 Crystal Structure Of Squid Rhodopsin Length = 372 8e-09
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 2e-21
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 8e-09
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-09
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-09
2x72_A349 Crystal Structure Of The Constitutively Active E113 4e-09
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 4e-09
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 4e-09
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 5e-09
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 5e-05
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 3e-04
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 3e-04
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-04
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 5e-04
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 7e-04
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 9e-04
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 5   YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
           Y  EG L  C  DY+++D   RS ++      +F P+++I + Y+ IV +VS HEK+M  
Sbjct: 176 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 235
Query: 65  QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPL 123
            AK++N   LR   Q+G +AE++LAK++++ +S + L+W+PY V+        +E + P 
Sbjct: 236 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 294
Query: 124 ITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLT 163
                 +FAKA+A++NP++Y++       HP + +A+  T
Sbjct: 295 AAQLPVMFAKASAIHNPMIYSVS------HPKFREAISQT 328
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 9e-53
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 8e-34
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-42
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 1e-32
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 2e-13
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 1e-06
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 8e-13
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 1e-12
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-12
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 3e-12
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 2e-11
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 2e-11
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 2e-10
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 4e-11
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 8e-08
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 5e-11
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 7e-11
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 9e-11
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 4e-10
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 5e-07
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 3e-09
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =  177 bits (449), Expect = 9e-53
 Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 8/166 (4%)

Query: 5   YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
           Y  EG L  C  DY+++D   RS ++      +F P+++I + Y+ IV +VS HEK+M  
Sbjct: 177 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 236

Query: 65  QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVEINPL 123
            AK++N   LR   Q+G +AE++LAK++++ +S + L+W+PY V+        +  + P 
Sbjct: 237 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 295

Query: 124 ITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGT 169
                 +FAKA+A++NP++Y++       HP + +A+  T   + T
Sbjct: 296 AAQLPVMFAKASAIHNPMIYSV------SHPKFREAISQTFPWVLT 335
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.83
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 99.77
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.76
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.76
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.75
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 99.73
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 99.73
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.71
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.71
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.69
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 99.67
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.67
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.65
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.65
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.65
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.64
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.63
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.57
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.55
2lnl_A 296 C-X-C chemokine receptor type 1; G protein coupled 99.55
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.53
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.48
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.47
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.47
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.47
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.46
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.45
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.42
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.42
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.41
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.41
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.41
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.39
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.37
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.36
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.34
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.46
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 97.56
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.01
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 82.97
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.83  E-value=7.2e-21  Score=176.50  Aligned_cols=73  Identities=19%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhcccc--------ccHHHHHHHHhhcccCccccccccccccCCCC
Q psy3981          80 SGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE--------INPLITIWGSVFAKANAVYNPIVYAIRYQYPP  151 (276)
Q Consensus        80 ~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~--------~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~~  151 (276)
                      +..++|+|++||+++|+++|++||+||++..++..+.+..        ...+++.++.||+|+|||+||+||++.+++..
T Consensus       399 ~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR  478 (510)
T 4grv_A          399 GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFR  478 (510)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            4456789999999999999999999999999998776543        22356678899999999999999999998875


Q ss_pred             C
Q psy3981         152 M  152 (276)
Q Consensus       152 ~  152 (276)
                      .
T Consensus       479 ~  479 (510)
T 4grv_A          479 Q  479 (510)
T ss_dssp             C
T ss_pred             H
Confidence            4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 3e-13
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 5e-07
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.5 bits (161), Expect = 3e-13
 Identities = 26/88 (29%), Positives = 40/88 (45%)

Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
           QY    P  +  L   M  L  +    N + +Y+ +  K LRTP N +++NLA +D  M+
Sbjct: 28  QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87

Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGM 235
           F    T +    +  +  GP  C L G 
Sbjct: 88  FGGFTTTLYTSLHGYFVFGPTGCNLEGF 115
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.54
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.38
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=7.7e-16  Score=132.74  Aligned_cols=129  Identities=26%  Similarity=0.540  Sum_probs=98.2

Q ss_pred             cCCceeeeecccCC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhH
Q psy3981           8 EGNLTACGTDYLTK--DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAE   85 (276)
Q Consensus         8 ~~~~~~C~~~~~~~--~~~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (276)
                      ++....|..++..+  ......|.+....+.+++|++++.++|.++.+.+||+.++             +++..++.+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~-------------~~~~~~~~~~~  247 (348)
T d1u19a_         181 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ-------------QQESATTQKAE  247 (348)
T ss_dssp             ETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS-------------SCSSSHHHHHH
T ss_pred             CCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------------cchhhhhHHHH
Confidence            34445565544332  2335567777788888999999999999999888764321             12233455778


Q ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHhccc-cccHHHHHHHHhhcccCccccccccccccCC
Q psy3981          86 IKLAKVALMTISLWFLAWTPYLVINFGGILEMV-EINPLITIWGSVFAKANAVYNPIVYAIRYQY  149 (276)
Q Consensus        86 ~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~  149 (276)
                      +|++|++++++++|++||+||.+..++....+. +..+....++.+++++||++||+||++++++
T Consensus       248 ~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~  312 (348)
T d1u19a_         248 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ  312 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHH
T ss_pred             hhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999887766543 3667778889999999999999999988754
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure