Psyllid ID: psy3998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccccccEEEEccccccEEEEEEccEEEccccHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEccHHHccccccccHHHHHHHcccccEEEEEccEEEEEEEEccEEEEEcHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHH
Coil and Loop (DISEMBL)
MNPKNTVFDAKRLIGRKFEDQKIQedikhwpftvvsdggkpkiqVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVItvpayfndsqrqatkdag
Flexible Loop (DISEMBL)
mnpkntvfdakrligrkfedqkiqedikhwpftvvsdggkpKIQVeykgeikkfapeEISSMVLTKMREIAEVYLGGKVSEAVITVPayfndsqrqatkdag
Low Complexity Region (SEG)
MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG
Disordered region (IsUnstruct)
*********AKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYF************
Disordered Region (DISOPRED)
MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATK***
Disordered Region (DISEMBL)
MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS*********
Disordered Region (DISPRO)
**PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P34933	636	Heat shock-related 70 kDa	yes	N/A	1.0	0.160	0.843	3e-47
Q9TUG3	636	Heat shock-related 70 kDa	N/A	N/A	1.0	0.160	0.843	3e-47
P14659	633	Heat shock-related 70 kDa	yes	N/A	1.0	0.161	0.833	7e-47
P17156	633	Heat shock-related 70 kDa	yes	N/A	1.0	0.161	0.833	7e-47
P54652	639	Heat shock-related 70 kDa	yes	N/A	1.0	0.159	0.833	1e-46
Q91233	644	Heat shock 70 kDa protein	N/A	N/A	1.0	0.158	0.843	2e-46
P11146	633	Heat shock 70 kDa protein	yes	N/A	1.0	0.161	0.833	5e-46
P02825	642	Major heat shock 70 kDa p	no	N/A	1.0	0.158	0.823	7e-46
P82910	642	Major heat shock 70 kDa p	no	N/A	1.0	0.158	0.823	7e-46
Q9VG58	641	Major heat shock 70 kDa p	no	N/A	1.0	0.159	0.823	7e-46

>sp|P34933|HSP72_BOVIN Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 92/102 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGEIK F PEEIS
Sbjct: 62  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEIS 121

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.
Bos taurus (taxid: 9913)

>sp|Q9TUG3|HSP72_CAPHI Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 92/102 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGEIK F PEEIS
Sbjct: 62  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEIS 121

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Capra hircus (taxid: 9925)

>sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2

 Score =  185 bits (469), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 92/102 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE+K F PEEIS
Sbjct: 62  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEIS 121

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Rattus norvegicus (taxid: 10116)

>sp|P17156|HSP72_MOUSE Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=2

 Score =  185 bits (469), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 92/102 (90%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE+K F PEEIS
Sbjct: 62  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEIS 121

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Mus musculus (taxid: 10090)

>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 91/102 (89%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEEIS
Sbjct: 62  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 121

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 122 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAG 163

In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage.

Homo sapiens (taxid: 9606)

>sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 90/102 (88%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGRKF DQ +Q D+KHWPF VVSDGGKPK+QV+YKGE K F PEEIS
Sbjct: 63  MNPNNTVFDAKRLIGRKFNDQVVQADMKHWPFKVVSDGGKPKVQVDYKGENKSFNPEEIS 122

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVL KMREIAE YLG KVS AVITVPAYFNDSQRQATKDAG
Sbjct: 123 SMVLVKMREIAEAYLGQKVSNAVITVPAYFNDSQRQATKDAG 164

Oncorhynchus tschawytscha (taxid: 74940)

>sp|P11146|HSP7B_DROME Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 96/102 (94%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MN KNTVFDAKRLIGRKF+D+KIQED+K WPF V+++ GKPKI+VE+KGE K+FAPEEIS
Sbjct: 61  MNAKNTVFDAKRLIGRKFDDKKIQEDLKLWPFKVINEKGKPKIEVEFKGERKRFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKMREIAEVYLGGKV +AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAG 162

Drosophila melanogaster (taxid: 7227)

>sp|P02825|HSP71_DROME Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=2 SV=3

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 93/102 (91%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP+NTVFDAKRLIGRK++D KI ED+KHWPF VVSDGGKPKI VEYKGE K+FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+E AE YLG  +++AVITVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAG 159

Drosophila melanogaster (taxid: 7227)

>sp|P82910|HSP70_DROME Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 93/102 (91%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP+NTVFDAKRLIGRK++D KI ED+KHWPF VVSDGGKPKI VEYKGE K+FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+E AE YLG  +++AVITVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAG 159

Drosophila melanogaster (taxid: 7227)

>sp|Q9VG58|HSP74_DROME Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 93/102 (91%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP+NTVFDAKRLIGRK++D KI ED+KHWPF VVSDGGKPKI VEYKGE K+FAPEEIS
Sbjct: 58  MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+E AE YLG  +++AVITVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAG 159

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
91078136	631	PREDICTED: similar to heat shock protein	1.0	0.161	0.892	5e-49
170057986	640	heat shock protein 70 B2 [Culex quinquef	1.0	0.159	0.843	4e-48
242013919	642	Heat shock protein, putative [Pediculus	1.0	0.158	0.872	9e-48
195395136	635	GJ10355 [Drosophila virilis] gi|19414290	1.0	0.160	0.862	3e-47
125774481	634	GA20564 [Drosophila pseudoobscura pseudo	1.0	0.160	0.862	4e-47
194741132	636	GF17572 [Drosophila ananassae] gi|190626	1.0	0.160	0.852	3e-46
195108677	636	GI23362 [Drosophila mojavensis] gi|19391	1.0	0.160	0.852	5e-46
295393296	653	heat shock protein 70 [Bemisia tabaci]	1.0	0.156	0.852	5e-46
323435564	369	Hsp70 [Timema poppensis]	1.0	0.276	0.833	7e-46
380854589	644	heat shock protein 70 [Tenebrio molitor]	1.0	0.158	0.843	8e-46

>gi|91078136|ref|XP_973521.1| PREDICTED: similar to heat shock protein 70 B2 [Tribolium castaneum] gi|270001374|gb|EEZ97821.1| hypothetical protein TcasGA2_TC000188 [Tribolium castaneum]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 99/102 (97%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNPKNTVFDAKRLIGRKF+D KIQED+KHWPFTV++DGGKPKIQVEYKGEIKKFAPEEIS
Sbjct: 61  MNPKNTVFDAKRLIGRKFDDTKIQEDMKHWPFTVINDGGKPKIQVEYKGEIKKFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIA+ YLG KV++AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIADTYLGAKVNDAVITVPAYFNDSQRQATKDAG 162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170057986|ref|XP_001864723.1| heat shock protein 70 B2 [Culex quinquefasciatus] gi|167877233|gb|EDS40616.1| heat shock protein 70 B2 [Culex quinquefasciatus]

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 99/102 (97%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNPKNTVFDAKRLIGR+F+DQKIQED++HWPF V++DGGKPKIQVE++GE K+FAPEE+S
Sbjct: 61  MNPKNTVFDAKRLIGRRFDDQKIQEDMRHWPFQVINDGGKPKIQVEFQGETKRFAPEEVS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKMRE+AEVYLGGKV++ VITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMREVAEVYLGGKVTDGVITVPAYFNDSQRQATKDAG 162

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013919|ref|XP_002427646.1| Heat shock protein, putative [Pediculus humanus corporis] gi|212512076|gb|EEB14908.1| Heat shock protein, putative [Pediculus humanus corporis]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 96/102 (94%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGRKF+D KIQEDIKHWPF VV+DGGKPKIQVE+KGE+KKFAPEEIS
Sbjct: 71  MNPSNTVFDAKRLIGRKFDDSKIQEDIKHWPFKVVNDGGKPKIQVEFKGEVKKFAPEEIS 130

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+E AE YLGG+V +AVITVPAYFNDSQRQATKDAG
Sbjct: 131 SMVLTKMKETAEAYLGGRVKDAVITVPAYFNDSQRQATKDAG 172

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195395136|ref|XP_002056192.1| GJ10355 [Drosophila virilis] gi|194142901|gb|EDW59304.1| GJ10355 [Drosophila virilis]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 98/102 (96%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MN KNTVFDAKRLIGRKF+D+KIQED+KHWPF V++DGGKPKI+VE+KGE K+FAPEE+S
Sbjct: 61  MNAKNTVFDAKRLIGRKFDDRKIQEDLKHWPFKVINDGGKPKIEVEFKGERKRFAPEEVS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKMREIAEVYLGGKV +AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMREIAEVYLGGKVKDAVITVPAYFNDSQRQATKDAG 162

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125774481|ref|XP_001358499.1| GA20564 [Drosophila pseudoobscura pseudoobscura] gi|54638236|gb|EAL27638.1| GA20564 [Drosophila pseudoobscura pseudoobscura]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 98/102 (96%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MN KNTVFDAKRLIGRKF+D+KIQED+KHWPF VV+DGGKPKI++E+KGE K+FAPEEIS
Sbjct: 61  MNAKNTVFDAKRLIGRKFDDKKIQEDLKHWPFKVVNDGGKPKIEIEFKGERKRFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKMREIAE+YLGGKV +AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMREIAELYLGGKVKDAVITVPAYFNDSQRQATKDAG 162

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194741132|ref|XP_001953043.1| GF17572 [Drosophila ananassae] gi|190626102|gb|EDV41626.1| GF17572 [Drosophila ananassae]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 97/102 (95%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MN KNTVFDAKRLIGRKF+D+KIQED+KHWPF VV+DGGKPKI+VE+KG+ K+FAPEEIS
Sbjct: 61  MNAKNTVFDAKRLIGRKFDDKKIQEDLKHWPFKVVNDGGKPKIEVEFKGQRKRFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVL KMREIAE+YLGGKV +AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLIKMREIAELYLGGKVKDAVITVPAYFNDSQRQATKDAG 162

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195108677|ref|XP_001998919.1| GI23362 [Drosophila mojavensis] gi|193915513|gb|EDW14380.1| GI23362 [Drosophila mojavensis]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 96/102 (94%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MN KNTVFDAKRLIGRKF+D+KIQED+KHWPF V++DGGKPKI+VE+KGE K+FAPEEIS
Sbjct: 61  MNAKNTVFDAKRLIGRKFDDKKIQEDLKHWPFKVINDGGKPKIEVEFKGERKRFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKMRE AEVYLG KV +AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMRETAEVYLGSKVKDAVITVPAYFNDSQRQATKDAG 162

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295393296|gb|ADG03468.1| heat shock protein 70 [Bemisia tabaci]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 94/102 (92%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP+NTVFDAKRLIGRKF+D KIQ D+KHWPFTVV+D  KPKIQVE+KGE K+FAPEEIS
Sbjct: 61  MNPQNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCSKPKIQVEFKGETKRFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKMRE AE YLGGKV +AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMRETAEAYLGGKVQDAVITVPAYFNDSQRQATKDAG 162

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|323435564|gb|ADX66659.1| Hsp70 [Timema poppensis]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 95/102 (93%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNPKN+VFDAKRLIGR+F+D KIQ D+KHWPFTVV+DGGKPKIQVEYKGE+K FAPEE+S
Sbjct: 1   MNPKNSVFDAKRLIGRRFDDPKIQADMKHWPFTVVNDGGKPKIQVEYKGEVKTFAPEEVS 60

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE +LG  V +AVITVPAYFNDSQRQATKDAG
Sbjct: 61  SMVLTKMKEIAEAFLGTSVRDAVITVPAYFNDSQRQATKDAG 102

Source: Timema poppensis

Species: Timema poppensis

Genus: Timema

Order: Phasmatodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380854589|gb|AFE88579.1| heat shock protein 70 [Tenebrio molitor] gi|380854591|gb|AFE88580.1| heat shock protein 70 [Tenebrio molitor]

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/102 (84%), Positives = 94/102 (92%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGRK++D KIQ+D+KHWPF V+SDGGKPKIQV+YKGEIKKFAPEEIS
Sbjct: 61  MNPSNTVFDAKRLIGRKYDDPKIQQDLKHWPFKVISDGGKPKIQVDYKGEIKKFAPEEIS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+E AE YLG  V +AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKETAEAYLGTSVRDAVITVPAYFNDSQRQATKDAG 162

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|P34933	636	HSPA2 "Heat shock-related 70 k	1.0	0.160	0.843	2.8e-43
UNIPROTKB|F1SA70	636	LOC100621324 "Uncharacterized	1.0	0.160	0.843	2.8e-43
UNIPROTKB|Q9TUG3	636	HSPA2 "Heat shock-related 70 k	1.0	0.160	0.843	2.8e-43
UNIPROTKB|E2QX84	637	HSPA2 "Uncharacterized protein	1.0	0.160	0.833	5.7e-43
MGI|MGI:96243	633	Hspa2 "heat shock protein 2" [	1.0	0.161	0.833	5.7e-43
RGD|620664	633	Hspa2 "heat shock protein 2" [	1.0	0.161	0.833	5.7e-43
UNIPROTKB|P54652	639	HSPA2 "Heat shock-related 70 k	1.0	0.159	0.833	1.2e-42
FB|FBgn0001217	633	Hsc70-2 "Heat shock protein co	1.0	0.161	0.833	1.9e-42
FB|FBgn0013277	641	Hsp70Ba "Heat-shock-protein-70	1.0	0.159	0.823	4.4e-42
FB|FBgn0013278	641	Hsp70Bb "Heat-shock-protein-70	1.0	0.159	0.823	4.4e-42

UNIPROTKB|P34933 HSPA2 "Heat shock-related 70 kDa protein 2" [Bos taurus (taxid:9913)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 86/102 (84%), Positives = 92/102 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGEIK F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

GO:0036128 "CatSper complex" evidence=ISS

GO:0006950 "response to stress" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SA70 LOC100621324 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 86/102 (84%), Positives = 92/102 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGEIK F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

GO:0070194 "synaptonemal complex disassembly" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0036128 "CatSper complex" evidence=IEA

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9TUG3 HSPA2 "Heat shock-related 70 kDa protein 2" [Capra hircus (taxid:9925)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 86/102 (84%), Positives = 92/102 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGEIK F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

GO:0036128 "CatSper complex" evidence=ISS

UNIPROTKB|E2QX84 HSPA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/102 (83%), Positives = 92/102 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE+K F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

GO:0070194 "synaptonemal complex disassembly" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0036128 "CatSper complex" evidence=IEA

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:96243 Hspa2 "heat shock protein 2" [Mus musculus (taxid:10090)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/102 (83%), Positives = 92/102 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE+K F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IDA

GO:0001673 "male germ cell nucleus" evidence=IDA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006950 "response to stress" evidence=IEA

GO:0007140 "male meiosis" evidence=IMP

GO:0007141 "male meiosis I" evidence=IMP

GO:0007286 "spermatid development" evidence=IMP

GO:0009986 "cell surface" evidence=ISO;IDA

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IMP

GO:0036128 "CatSper complex" evidence=IDA

GO:0051861 "glycolipid binding" evidence=IDA

GO:0070194 "synaptonemal complex disassembly" evidence=IMP

RGD|620664 Hspa2 "heat shock protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/102 (83%), Positives = 92/102 (90%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE+K F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAG 163

GO:0000795 "synaptonemal complex" evidence=IEA;ISO

GO:0001673 "male germ cell nucleus" evidence=IEA;ISO

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006950 "response to stress" evidence=IEA

GO:0007140 "male meiosis" evidence=ISO

GO:0007141 "male meiosis I" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IEA;ISO

GO:0036128 "CatSper complex" evidence=ISO;ISS

GO:0051861 "glycolipid binding" evidence=IEA;ISO

GO:0070194 "synaptonemal complex disassembly" evidence=IEA;ISO

UNIPROTKB|P54652 HSPA2 "Heat shock-related 70 kDa protein 2" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 85/102 (83%), Positives = 91/102 (89%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEEIS
Sbjct:    62 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 121

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct:   122 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAG 163

GO:0005524 "ATP binding" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0031662 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G2/M" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0070194 "synaptonemal complex disassembly" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0036128 "CatSper complex" evidence=ISS

GO:0007140 "male meiosis" evidence=TAS

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0001217 Hsc70-2 "Heat shock protein cognate 2" [Drosophila melanogaster (taxid:7227)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 85/102 (83%), Positives = 96/102 (94%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MN KNTVFDAKRLIGRKF+D+KIQED+K WPF V+++ GKPKI+VE+KGE K+FAPEEIS
Sbjct:    61 MNAKNTVFDAKRLIGRKFDDKKIQEDLKLWPFKVINEKGKPKIEVEFKGERKRFAPEEIS 120

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKMREIAEVYLGGKV +AV+TVPAYFNDSQRQATKDAG
Sbjct:   121 SMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAG 162

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

FB|FBgn0013277 Hsp70Ba "Heat-shock-protein-70Ba" [Drosophila melanogaster (taxid:7227)]

 Score = 446 (162.1 bits), Expect = 4.4e-42, P = 4.4e-42
 Identities = 84/102 (82%), Positives = 93/102 (91%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP+NTVFDAKRLIGRK++D KI ED+KHWPF VVSDGGKPKI VEYKGE K+FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+E AE YLG  +++AVITVPAYFNDSQRQATKDAG
Sbjct:   118 SMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAG 159

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

FB|FBgn0013278 Hsp70Bb "Heat-shock-protein-70Bb" [Drosophila melanogaster (taxid:7227)]

 Score = 446 (162.1 bits), Expect = 4.4e-42, P = 4.4e-42
 Identities = 84/102 (82%), Positives = 93/102 (91%)

Query:     1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
             MNP+NTVFDAKRLIGRK++D KI ED+KHWPF VVSDGGKPKI VEYKGE K+FAPEEIS
Sbjct:    58 MNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEIS 117

Query:    61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             SMVLTKM+E AE YLG  +++AVITVPAYFNDSQRQATKDAG
Sbjct:   118 SMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAG 159

GO:0009408 "response to heat" evidence=IMP;NAS

GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P08106	HSP70_CHICK	No assigned EC number	0.7941	1.0	0.1608	yes	N/A
Q5B2V1	HSP70_EMENI	No assigned EC number	0.7647	1.0	0.1583	yes	N/A
P14659	HSP72_RAT	No assigned EC number	0.8333	1.0	0.1611	yes	N/A
A2Q0Z1	HSP7C_HORSE	No assigned EC number	0.7647	1.0	0.1578	yes	N/A
P54652	HSP72_HUMAN	No assigned EC number	0.8333	1.0	0.1596	yes	N/A
P17156	HSP72_MOUSE	No assigned EC number	0.8333	1.0	0.1611	yes	N/A
O59855	HSP72_SCHPO	No assigned EC number	0.7745	1.0	0.1576	yes	N/A
P11146	HSP7B_DROME	No assigned EC number	0.8333	1.0	0.1611	yes	N/A
P34933	HSP72_BOVIN	No assigned EC number	0.8431	1.0	0.1603	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	3e-69
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	5e-57
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	7e-57
pfam00012	598	pfam00012, HSP70, Hsp70 protein	6e-52
PRK00290	627	PRK00290, dnaK, molecular chaperone DnaK; Provisio	5e-41
cd11733	377	cd11733, HSPA9-like_NBD, Nucleotide-binding domain	7e-40
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	2e-39
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	1e-38
TIGR02350	595	TIGR02350, prok_dnaK, chaperone protein DnaK	2e-37
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	4e-37
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	1e-32
PTZ00400	663	PTZ00400, PTZ00400, DnaK-type molecular chaperone;	2e-32
CHL00094	621	CHL00094, dnaK, heat shock protein 70	6e-32
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	3e-30
PTZ00186	657	PTZ00186, PTZ00186, heat shock 70 kDa precursor pr	6e-30
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	5e-28
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	5e-28
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	7e-28
cd10236	355	cd10236, HscA_like_NBD, Nucleotide-binding domain	2e-25
cd10237	417	cd10237, HSPA13-like_NBD, Nucleotide-binding domai	2e-25
PRK05183	616	PRK05183, hscA, chaperone protein HscA; Provisiona	2e-25
cd10235	339	cd10235, HscC_like_NBD, Nucleotide-binding domain	9e-24
TIGR01991	599	TIGR01991, HscA, Fe-S protein assembly chaperone H	3e-22
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	3e-22
cd11739	383	cd11739, HSPH1_NBD, Nucleotide-binding domain of H	1e-21
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	2e-17
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	7e-16
cd11738	383	cd11738, HSPA4L_NBD, Nucleotide-binding domain of	2e-14
cd11737	383	cd11737, HSPA4_NBD, Nucleotide-binding domain of H	3e-14
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	3e-13
PRK01433	595	PRK01433, hscA, chaperone protein HscA; Provisiona	2e-07

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score =  211 bits (538), Expect = 3e-69
 Identities = 81/102 (79%), Positives = 86/102 (84%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGRKF D  +Q D+KHWPF VV+ GGKP I VEYKGE K F PEEIS
Sbjct: 56  MNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEIS 115

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 116 SMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAG 157

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score =  179 bits (456), Expect = 5e-57
 Identities = 71/102 (69%), Positives = 87/102 (85%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
            NP+NT+FD KRLIGRKF+D+++Q+DIK  P+ VV+  GKP I+V+ KGE K F+PEEIS
Sbjct: 58  SNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +MVLTKM+EIAE YLG KV  AV+TVPAYFND+QRQATKDAG
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAG 159

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score =  184 bits (470), Expect = 7e-57
 Identities = 74/103 (71%), Positives = 85/103 (82%), Gaps = 1/103 (0%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDG-GKPKIQVEYKGEIKKFAPEEI 59
            NP+NTVFDAKRLIGRKF+D  +Q D+KHWPF V + G  KP I+V Y+GE K F PEEI
Sbjct: 61  RNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEI 120

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SSMVL KM+EIAE YLG +V +AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163

Length = 653

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score =  170 bits (434), Expect = 6e-52
 Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 3/103 (2%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
            NPKNTVF  KRLIGRKF D  +Q DIKH P+ VV    G   ++V Y GE   F PE+I
Sbjct: 56  TNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQI 113

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+MVL K++E AE YLG  V++AVITVPAYFND+QRQATKDAG
Sbjct: 114 SAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAG 156

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional

 Score =  141 bits (359), Expect = 5e-41
 Identities = 59/103 (57%), Positives = 77/103 (74%), Gaps = 7/103 (6%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEI 59
            NP+NT+F  KRL+GR+ E+  +Q+DIK  P+ +V  D G     VE  G  KK+ P+EI
Sbjct: 60  TNPENTIFSIKRLMGRRDEE--VQKDIKLVPYKIVKADNGDAW--VEIDG--KKYTPQEI 113

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+M+L K+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156

Length = 627

>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins

 Score =  135 bits (341), Expect = 7e-40
 Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 7/103 (6%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV--SDGGKPKIQVEYKGEIKKFAPEEI 59
           NP+NT++  KRLIGR+F+D ++Q+DIK+ P+ +V  S+G      VE  G  KK++P +I
Sbjct: 61  NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNG---DAWVEAHG--KKYSPSQI 115

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
            + VL KM+E AE YLG  V  AVITVPAYFNDSQRQATKDAG
Sbjct: 116 GAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAG 158

This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score =  133 bits (338), Expect = 2e-39
 Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPF-TVVSDGGKPKIQVEYKGEIKKFAPEEI 59
            N KNTV + KRLIGRKF+D ++Q+++K  PF  V    GK  I+V Y GE K F+PE++
Sbjct: 57  SNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQV 116

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
            +M+LTK++EIAE  L GKV++ VI+VP+YF D+QR+A  DA
Sbjct: 117 LAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDA 158

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score =  132 bits (333), Expect = 1e-38
 Identities = 55/102 (53%), Positives = 76/102 (74%), Gaps = 4/102 (3%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
            NP+NT+F  KR +GRKF++ + +  + +    VV +GG  K++++  G  K + P+EIS
Sbjct: 60  TNPENTIFSIKRFMGRKFDEVEEERKVPYKV--VVDEGGNYKVEIDSNG--KDYTPQEIS 115

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +M+L K++E AE YLG KV+EAVITVPAYFNDSQRQATKDAG
Sbjct: 116 AMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAG 157

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK

 Score =  132 bits (333), Expect = 2e-37
 Identities = 54/101 (53%), Positives = 78/101 (77%), Gaps = 6/101 (5%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           NP+NT++  KR +GR+F+  ++ E+ K  P+ VV DGG  +++V+ K    ++ P+EIS+
Sbjct: 59  NPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGGDVRVKVDGK----EYTPQEISA 112

Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           M+L K+++ AE YLG KV+EAVITVPAYFND+QRQATKDAG
Sbjct: 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score =  127 bits (322), Expect = 4e-37
 Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 4/102 (3%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
            NP+NTV D KRLIGRKF+D  +Q   K     +  D G P I V  +   KK++PEE+S
Sbjct: 57  DNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPEEVS 112

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +++L K++E AE YLG  V+EAVITVPAYFND+QR+ATK+A 
Sbjct: 113 ALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAA 154

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score =  116 bits (291), Expect = 1e-32
 Identities = 54/103 (52%), Positives = 72/103 (69%), Gaps = 5/103 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
           ++P+NT F  KRLIGR+F+D ++Q  +K   + +V    G   I     G  KK++P +I
Sbjct: 59  LHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYT--NG--KKYSPSQI 114

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +S VL K+++ AE YLG +V EAVITVPAYFNDSQRQATKDAG
Sbjct: 115 ASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAG 157

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional

 Score =  118 bits (296), Expect = 2e-32
 Identities = 54/101 (53%), Positives = 72/101 (71%), Gaps = 3/101 (2%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           NP+NTVF  KRLIGR++++   +++ K  P+ +V         +E +G  KK++P +I +
Sbjct: 100 NPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNG-DAWIEAQG--KKYSPSQIGA 156

Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
            VL KM+E AE YLG KV +AVITVPAYFNDSQRQATKDAG
Sbjct: 157 FVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197

Length = 663

>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70

 Score =  116 bits (293), Expect = 6e-32
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 3/102 (2%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NT +  KR IGRKF +  I E+ K   + V +D     I++E     K F+PEEIS
Sbjct: 60  INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDS-NGNIKIECPALNKDFSPEEIS 116

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           + VL K+ E A  YLG  V++AVITVPAYFNDSQRQATKDAG
Sbjct: 117 AQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158

Length = 621

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score =  112 bits (281), Expect = 3e-30
 Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 11/106 (10%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDG-GKPKI---QVEYKGEIKKFAP 56
           +NP+NT ++ KR IGR++++  +  + K  P+T+  +  G  +I   ++E     ++FAP
Sbjct: 60  LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLE-----REFAP 112

Query: 57  EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           EE+S+M+L K+ + A  YLG  V+ AVITVPAYFNDSQRQAT+DAG
Sbjct: 113 EELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158

Length = 668

>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional

 Score =  110 bits (277), Expect = 6e-30
 Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEIS 60
           NP++T +  KRLIGR+FED+ IQ+DIK+ P+ +V +  G   +Q    G  K+++P +I 
Sbjct: 85  NPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ---DGNGKQYSPSQIG 141

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           + VL KM+E AE +LG KVS AV+T PAYFND+QRQATKDAG
Sbjct: 142 AFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183

Length = 657

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score =  105 bits (264), Expect = 5e-28
 Identities = 53/102 (51%), Positives = 63/102 (61%), Gaps = 22/102 (21%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
            NP+NT+F  KR IGR                         KI VE  G  KK+ PEEIS
Sbjct: 64  DNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEIS 101

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +M+LTK++E AE YLG KV++AVITVPAYFND+QRQATKDA 
Sbjct: 102 AMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA 143

Length = 579

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score =  105 bits (264), Expect = 5e-28
 Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 5/101 (4%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           N +NTV+  KR IGR+++D   +E+    P+T V  G    + V+ +G  + + P+EIS+
Sbjct: 61  NAENTVYSIKRFIGRRWDDT--EEERSRVPYTCVK-GRDDTVNVQIRG--RNYTPQEISA 115

Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           M+L K+++ AE YLG  V++AVITVPAYF D+QRQATKDAG
Sbjct: 116 MILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156

Length = 653

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score =  105 bits (263), Expect = 7e-28
 Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 5/103 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEI 59
           +NP+NT F  KR IGRK  +  + E+ K   + VV D  G  K+     G  K+FA EEI
Sbjct: 97  VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEI 152

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+ VL K+ + A  +L  KV++AVITVPAYFNDSQR ATKDAG
Sbjct: 153 SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195

Length = 673

>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 6/100 (6%)

Query: 3   PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSM 62
           PKNT+   KRL+G+  ED  I++   + P     +GG      +         P E+S+ 
Sbjct: 59  PKNTISSVKRLMGKSIED--IKKSFPYLPILEGKNGGIILFHTQ----QGTVTPVEVSAE 112

Query: 63  VLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +L  ++E AE  LGG++  AVITVPAYF+D+QRQATKDA 
Sbjct: 113 ILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAA 152

Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355

>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins

 Score = 97.5 bits (243), Expect = 2e-25
 Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEIS 60
           NP+NT++DAKR IG+ F  ++++ +   + F V  +             E K   PEEI 
Sbjct: 80  NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
           S ++ K+R++AE YLG  V +AVI+VPA F++ QR AT  A
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKA 180

Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417

>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional

 Score = 98.3 bits (246), Expect = 2e-25
 Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 7/101 (6%)

Query: 3   PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFT-VVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           PKNT+   KR +GR   D  IQ+   H P+  V S+ G P I+   +G     +P E+S+
Sbjct: 78  PKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA-QGLK---SPVEVSA 131

Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
            +L  +R+ AE  LGG++  AVITVPAYF+D+QRQATKDA 
Sbjct: 132 EILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172

Length = 616

>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins

 Score = 91.8 bits (229), Expect = 9e-24
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 46  EYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +Y+   ++F  EE+SS+VL  ++E AE YLG  V+EAVI+VPAYFND QR+ATK AG
Sbjct: 74  KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAG 130

This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339

>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA

 Score = 89.3 bits (222), Expect = 3e-22
 Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 3   PKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSM 62
           PKNT+   KRL+GR  ED K    +   P+  V DG    +++          P E+S+ 
Sbjct: 59  PKNTISSVKRLMGRSIEDIKTFSIL---PYRFV-DGPGEMVRLRTVQGTV--TPVEVSAE 112

Query: 63  VLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +L K+++ AE  LGG +  AVITVPAYF+D+QRQATKDA 
Sbjct: 113 ILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 88.2 bits (219), Expect = 3e-22
 Identities = 31/100 (31%), Positives = 59/100 (59%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           N  NT+   K+++GR + D   Q++       ++   G+PK ++  + + K  +P+E++ 
Sbjct: 58  NAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAK 117

Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
           ++  KM+EIA+  LG    + VITVP YF++ Q+ A ++A
Sbjct: 118 LIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREA 157

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1

 Score = 86.5 bits (214), Expect = 1e-21
 Identities = 37/101 (36%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           +  NTV + KR  GR F D  +Q++ ++  + +V    G   ++V Y GE   F+ E+I+
Sbjct: 58  HANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQIT 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
           +M+LTK++E AE  L   V++ VI+VP++F D++R++  DA
Sbjct: 118 AMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDA 158

Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIK--HWPFTVVSDGGKPKIQVEYKGEIKKFAPEEI 59
           N KNT+ + + L+G+ F +  +         P  V+  GG  + + E   +       E+
Sbjct: 58  NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEV 117

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
           +   L +++E AE +LG KV+ AV++VP +F+D Q +A   A
Sbjct: 118 TVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKA 159

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score = 70.7 bits (174), Expect = 7e-16
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPK-IQVEYKGEIKKFAPEEIS 60
            P+      K L+G+  +D  +       P   +        +  +     + ++ EE+ 
Sbjct: 57  FPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEE-YSVEELV 115

Query: 61  SMVLTKMREIAEVYLGG-KVSEAVITVPAYFNDSQRQATKDA 101
           +M+L   +++AE +     V + VITVP YF  +QRQA  DA
Sbjct: 116 AMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDA 157

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           N +NT+   K+L GR F+D  +Q +    P+ +     G   ++V Y  E + FA E+++
Sbjct: 58  NVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVT 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
            M+L K++E +E  L   V++ VI++P++F D++R++   A 
Sbjct: 118 GMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAA 159

Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4

 Score = 66.2 bits (161), Expect = 3e-14
 Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           N KNTV   KR  GR F D  +Q +     + +V    G   I+V Y  E + F  E+++
Sbjct: 58  NAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVT 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
           +M+LTK++E AE  L   V + V++VP ++ D++R++  DA
Sbjct: 118 AMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDA 158

Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKH-WPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           N KNTV + KR+IG  +     +++ KH     V  D  K   +V + GE   F+  +++
Sbjct: 56  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 115

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101
           +M + K+++  +      +++  I VP ++ + QR    DA
Sbjct: 116 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADA 156

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 52  KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQR----QATKDAG 102
           K+    EI++ +   ++  AE  L   +++AVITVPA+FND+ R     A K AG
Sbjct: 114 KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAG 168

Length = 595

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG0100|consensus	663		100.0
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.93
KOG0103|consensus	727		99.93
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.92
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.91
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.9
PRK13410	668	molecular chaperone DnaK; Provisional	99.9
KOG0101|consensus	620		99.89
PRK13411	653	molecular chaperone DnaK; Provisional	99.89
PLN03184	673	chloroplast Hsp70; Provisional	99.88
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.88
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.88
KOG0102|consensus	640		99.87
KOG0104|consensus	902		99.87
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.86
CHL00094	621	dnaK heat shock protein 70	99.86
PRK05183	616	hscA chaperone protein HscA; Provisional	99.85
PRK01433	595	hscA chaperone protein HscA; Provisional	99.78
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.76
PRK11678	450	putative chaperone; Provisional	99.39
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	98.84
PRK13929	335	rod-share determining protein MreBH; Provisional	98.38
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	97.71
PRK13928	336	rod shape-determining protein Mbl; Provisional	97.58
PRK13930	335	rod shape-determining protein MreB; Provisional	97.31
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	97.16
PRK13927	334	rod shape-determining protein MreB; Provisional	97.06
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	95.61
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	93.05
cd06007	59	R3H_DEXH_helicase R3H domain of a group of protein	89.27
cd02640	60	R3H_NRF R3H domain of the NF-kappaB-repression fac	84.05
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	82.41
PF03484	70	B5: tRNA synthetase B5 domain; InterPro: IPR005147	81.03

>KOG0100|consensus

Probab=100.00  E-value=9.3e-33  Score=193.40  Aligned_cols=102  Identities=70%  Similarity=1.063  Sum_probs=98.3

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEc-CceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK-GEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.|||++.|||||+.|+|+.++...++|||+++..++.|.+++... |+.+.|+|||+++|+|.++|+.||.|+|.++
T Consensus        93 ~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv  172 (663)
T KOG0100|consen   93 SNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKV  172 (663)
T ss_pred             cCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            599999999999999999999999999999999999999999999987 5688999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +++|+|||||||+.|||++++|+
T Consensus       173 ~~AVvTvPAYFNDAQrQATKDAG  195 (663)
T KOG0100|consen  173 THAVVTVPAYFNDAQRQATKDAG  195 (663)
T ss_pred             cceEEecchhcchHHHhhhcccc
Confidence            99999999999999999999984

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=167.26  Aligned_cols=102  Identities=72%  Similarity=1.129  Sum_probs=95.5

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||+||++++|||||+.++|+.++...++|||.++. .++.+.+.+.+.++.+.++|++|++|+|++|++.|+.++|.++
T Consensus        61 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v  140 (653)
T PTZ00009         61 RNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQV  140 (653)
T ss_pred             hCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            589999999999999999999999988999999865 5677888888888778999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       141 ~~~VItVPa~f~~~qR~a~~~Aa  163 (653)
T PTZ00009        141 KDAVVTVPAYFNDSQRQATKDAG  163 (653)
T ss_pred             ceeEEEeCCCCCHHHHHHHHHHH
Confidence            99999999999999999999996

>KOG0103|consensus

Probab=99.93  E-value=1e-25  Score=164.76  Aligned_cols=102  Identities=51%  Similarity=0.754  Sum_probs=98.5

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +|++||+.++|||+|++|+||.++...+++|+.++. .+|.+++.+.+.|+.+.|||++|+||+|.+|++.|++.+..++
T Consensus        58 ~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v  137 (727)
T KOG0103|consen   58 TNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPV  137 (727)
T ss_pred             ecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCC
Confidence            689999999999999999999999999999999876 6899999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .+|||+||+||++.||+++++||
T Consensus       138 ~DcvIavP~~FTd~qRravldAA  160 (727)
T KOG0103|consen  138 SDCVIAVPSYFTDSQRRAVLDAA  160 (727)
T ss_pred             CCeeEeccccccHHHHHHHHhHH
Confidence            99999999999999999999997

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.92  E-value=1.6e-24  Score=161.74  Aligned_cols=98  Identities=55%  Similarity=0.895  Sum_probs=88.5

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||+.++|+.++...+.+||+++. ++|...+.+  .  .+.++|++|++|+|++|++.|+.++|.++
T Consensus        99 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~speel~a~iL~~lk~~ae~~lg~~v  174 (663)
T PTZ00400         99 TNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA--Q--GKKYSPSQIGAFVLEKMKETAESYLGRKV  174 (663)
T ss_pred             hCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999888999999875 455555544  3  37899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       175 ~~~VITVPa~f~~~qR~a~~~Aa  197 (663)
T PTZ00400        175 KQAVITVPAYFNDSQRQATKDAG  197 (663)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999996

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.91  E-value=7.7e-24  Score=157.75  Aligned_cols=99  Identities=56%  Similarity=0.906  Sum_probs=87.9

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++||+||+.++|+.++...+.|||+++.. ++...+.  . ++.+.++|+||++++|++||+.|+.++|.++
T Consensus        84 ~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~--~-~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v  160 (657)
T PTZ00186         84 TNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ--D-GNGKQYSPSQIGAFVLEKMKETAENFLGHKV  160 (657)
T ss_pred             hCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEE--e-CCCeEEcHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            5899999999999999999999999989999998753 4444333  2 2347899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||+||++.||+++++||
T Consensus       161 ~~aVITVPayF~~~qR~at~~Aa  183 (657)
T PTZ00186        161 SNAVVTCPAYFNDAQRQATKDAG  183 (657)
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            99999999999999999999986

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.90  E-value=1.4e-23  Score=154.54  Aligned_cols=102  Identities=54%  Similarity=0.951  Sum_probs=93.1

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||+++++++|||||+.++++.++...+.+||+++.+ +|.+.+.+.+.|....++|+++++|+|++|++.|+.++|.++
T Consensus        56 ~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~  135 (602)
T PF00012_consen   56 RNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKV  135 (602)
T ss_dssp             TSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhccccc
Confidence            5899999999999999999999999989999998764 788889999888778999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       136 ~~~vitVPa~~~~~qr~~~~~Aa  158 (602)
T PF00012_consen  136 TDVVITVPAYFTDEQRQALRDAA  158 (602)
T ss_dssp             EEEEEEE-TT--HHHHHHHHHHH
T ss_pred             ccceeeechhhhhhhhhcccccc
Confidence            99999999999999999999986

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.90  E-value=1.9e-23  Score=156.00  Aligned_cols=98  Identities=49%  Similarity=0.849  Sum_probs=85.0

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||+||++++|||||+++++  ++...+++||++.. ++|...+.+..  ..+.++|++|++|+|++|++.|+.++|.++
T Consensus        60 ~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~speel~a~iL~~lk~~ae~~lg~~v  135 (668)
T PRK13410         60 LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPR--LEREFAPEELSAMILRKLADDASRYLGEPV  135 (668)
T ss_pred             hCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            58999999999999999876  55566789999865 34555555433  348899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       136 ~~~VITVPa~f~~~qR~a~~~Aa  158 (668)
T PRK13410        136 TGAVITVPAYFNDSQRQATRDAG  158 (668)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999996

>KOG0101|consensus

Probab=99.89  E-value=1.1e-23  Score=154.17  Aligned_cols=102  Identities=73%  Similarity=1.125  Sum_probs=97.0

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++||++|+.++|+.++..+++|||++.. .++.+.+.+.++++.+.++|+++.+|+|.++++.|+.++|..+
T Consensus        64 ~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v  143 (620)
T KOG0101|consen   64 RNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTV  143 (620)
T ss_pred             cCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCce
Confidence            689999999999999999999999999999999874 5678899999999899999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|+|||++|++.||+++.+||
T Consensus       144 ~~aviTVPa~F~~~Qr~at~~A~  166 (620)
T KOG0101|consen  144 KKAVVTVPAYFNDSQRAATKDAA  166 (620)
T ss_pred             eeEEEEecCCcCHHHHHHHHHHH
Confidence            99999999999999999999985

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.89  E-value=4.7e-23  Score=153.68  Aligned_cols=96  Identities=50%  Similarity=0.865  Sum_probs=83.3

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||+||++++|||||+.++|+.  ...+++||+++. .++...+.  ..+  ..++|+++++|+|++|++.|+.++|.++
T Consensus        60 ~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~--i~~--~~~~peei~a~iL~~lk~~ae~~lg~~v  133 (653)
T PRK13411         60 TNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQ--IRG--RNYTPQEISAMILQKLKQDAEAYLGEPV  133 (653)
T ss_pred             hCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEE--ECC--EEECHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5899999999999999998864  456789999875 34444444  333  7899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       134 ~~~VITVPa~f~~~qR~a~~~Aa  156 (653)
T PRK13411        134 TQAVITVPAYFTDAQRQATKDAG  156 (653)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999999996

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.88  E-value=1.3e-22  Score=151.70  Aligned_cols=98  Identities=52%  Similarity=0.775  Sum_probs=84.9

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||++++|  ++...+.+||+++. ++|...+.+...  ...++|+++++++|++|++.|+.++|.++
T Consensus        97 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v  172 (673)
T PLN03184         97 VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKV  172 (673)
T ss_pred             hCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999987  45566889999875 345555554433  36899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       173 ~~~VITVPa~f~~~qR~a~~~Aa  195 (673)
T PLN03184        173 TKAVITVPAYFNDSQRTATKDAG  195 (673)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999986

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.88  E-value=2.1e-22  Score=149.62  Aligned_cols=96  Identities=59%  Similarity=0.969  Sum_probs=84.4

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||+.  ++.++...+.+||+++.. +|...+  ..++  +.++|+++++|+|++|++.|+.++|.++
T Consensus        60 ~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v  133 (627)
T PRK00290         60 TNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWV--EIDG--KKYTPQEISAMILQKLKKDAEDYLGEKV  133 (627)
T ss_pred             hCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEE--EECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999  566788888999998864 444444  3443  7899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       134 ~~~VItVPa~f~~~qR~a~~~Aa  156 (627)
T PRK00290        134 TEAVITVPAYFNDAQRQATKDAG  156 (627)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999986

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.88  E-value=3.3e-22  Score=147.85  Aligned_cols=96  Identities=56%  Similarity=0.983  Sum_probs=84.2

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS   80 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~   80 (102)
                      +||.||++++|||||+.+++  ++...+.+||++..++|...+.+  +  .+.++|+++++++|++|++.|+.++|.++.
T Consensus        58 ~~p~~~i~~~Kr~iG~~~~~--~~~~~~~~~~~v~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~  131 (595)
T TIGR02350        58 TNPENTIYSIKRFMGRRFDE--VTEEAKRVPYKVVGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVT  131 (595)
T ss_pred             hCchhhhHHHHHHhCCCchH--HHHHhhcCCeeEEcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999854  66677889999655666555554  3  378999999999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          81 EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        81 ~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ++|||||++|++.||+++++||
T Consensus       132 ~~VItVPa~f~~~qR~a~~~Aa  153 (595)
T TIGR02350       132 EAVITVPAYFNDAQRQATKDAG  153 (595)
T ss_pred             eEEEEECCCCCHHHHHHHHHHH
Confidence            9999999999999999999986

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>KOG0102|consensus

Probab=99.87  E-value=1.8e-22  Score=144.95  Aligned_cols=98  Identities=58%  Similarity=0.981  Sum_probs=90.4

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      .||.||++.-|||||+.|+|++++.+++..||+++. .||..+++.  .|  ..++|.++.+|+|.++++.|++++|..+
T Consensus        85 ~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~tae~yl~~~v  160 (640)
T KOG0102|consen   85 TNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKETAEAYLGKKV  160 (640)
T ss_pred             cCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHHHHHHHcCchh
Confidence            489999999999999999999999999999999886 566666665  44  9999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|+|||||||+.||+++++|.
T Consensus       161 ~~avvtvpAyfndsqRqaTkdag  183 (640)
T KOG0102|consen  161 KNAVITVPAYFNDSQRQATKDAG  183 (640)
T ss_pred             hheeeccHHHHhHHHHHHhHhhh
Confidence            99999999999999999999984

>KOG0104|consensus

Probab=99.87  E-value=7.1e-22  Score=145.84  Aligned_cols=101  Identities=28%  Similarity=0.503  Sum_probs=93.1

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCce-eeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFT-VVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      |+|.+++.+++.|||++.+++.++.+.+++|+- ++.++.+.++.+..++ ...|++|||+||+|.+.++.||.+...+|
T Consensus        80 r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~I  158 (902)
T KOG0104|consen   80 RFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPI  158 (902)
T ss_pred             cCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcch
Confidence            689999999999999999999999999998865 6666677778887765 68999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +++|||||.||++.||+++.+||
T Consensus       159 kd~ViTVP~~F~qaeR~all~Aa  181 (902)
T KOG0104|consen  159 KDMVITVPPFFNQAERRALLQAA  181 (902)
T ss_pred             hheEEeCCcccCHHHHHHHHHHH
Confidence            99999999999999999999997

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.86  E-value=1.1e-21  Score=145.23  Aligned_cols=95  Identities=45%  Similarity=0.698  Sum_probs=81.2

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||+||++++|||||+.++|..  . .+.+||+++.. +|...+.+  .+  ..++|+|+++++|++|++.|+.++|.++
T Consensus        57 ~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~--~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v  129 (599)
T TIGR01991        57 EDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRT--VQ--GTVTPVEVSAEILKKLKQRAEESLGGDL  129 (599)
T ss_pred             hChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEe--CC--CEEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4899999999999999988743  2 56789998653 45544443  32  3789999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       130 ~~~VItVPa~f~~~qR~a~~~Aa  152 (599)
T TIGR01991       130 VGAVITVPAYFDDAQRQATKDAA  152 (599)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999986

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>CHL00094 dnaK heat shock protein 70

Probab=99.86  E-value=2.6e-21  Score=143.76  Aligned_cols=98  Identities=57%  Similarity=0.847  Sum_probs=84.4

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||+.+++  +....+.+||+++.+ +|...+.+...  ...++|+++++++|++|++.|+.++|.++
T Consensus        60 ~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~--~~~~s~eei~a~iL~~l~~~ae~~lg~~v  135 (621)
T CHL00094         60 INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPAL--NKDFSPEEISAQVLRKLVEDASKYLGETV  135 (621)
T ss_pred             hCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            48999999999999999876  555667799998753 46555554433  37899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       136 ~~~VItVPa~f~~~qR~a~~~Aa  158 (621)
T CHL00094        136 TQAVITVPAYFNDSQRQATKDAG  158 (621)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999986

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.85  E-value=3.7e-21  Score=142.83  Aligned_cols=96  Identities=47%  Similarity=0.749  Sum_probs=82.6

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||+.++|  ++.....+||.+.. ++|.+.+.+.  +  ..++|+|+++++|++|++.|+.++|.++
T Consensus        76 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v  149 (616)
T PRK05183         76 QDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGEL  149 (616)
T ss_pred             hCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            48999999999999999887  44445778998765 3566655542  2  4789999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       150 ~~~VITVPa~f~~~qR~a~~~Aa  172 (616)
T PRK05183        150 DGAVITVPAYFDDAQRQATKDAA  172 (616)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999986

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.78  E-value=6.8e-19  Score=130.33  Aligned_cols=94  Identities=23%  Similarity=0.321  Sum_probs=69.9

Q ss_pred             ccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEE
Q psy3998           6 TVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVIT   85 (102)
Q Consensus         6 ti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~Vit   85 (102)
                      |++++|||||+.+++................. +...+.+...  .+.++|+|+++++|++|++.|+.++|.++.++|||
T Consensus        71 ti~~~KrliG~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVIT  147 (595)
T PRK01433         71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDV-NSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVIT  147 (595)
T ss_pred             hHHHHHHHhCCCchhhccchhhHhhhhheeec-CCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence            78999999999987622111000001111111 2223344443  37899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHHHhC
Q psy3998          86 VPAYFNDSQRQATKDAG  102 (102)
Q Consensus        86 VP~~f~~~qr~~~~~Aa  102 (102)
                      ||++|++.||+++++||
T Consensus       148 VPa~f~~~qR~a~~~Aa  164 (595)
T PRK01433        148 VPAHFNDAARGEVMLAA  164 (595)
T ss_pred             ECCCCCHHHHHHHHHHH
Confidence            99999999999999996

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2e-18  Score=127.42  Aligned_cols=80  Identities=66%  Similarity=0.960  Sum_probs=69.5

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS   80 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~   80 (102)
                      +||.||++.+||++|+.                    +....+.+...+  +.++|+++++|+|.+||+.|+.++|.+++
T Consensus        64 ~~p~~t~~~~kr~~G~~--------------------~~~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~  121 (579)
T COG0443          64 DNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVT  121 (579)
T ss_pred             hCCcceEEEEehhcCCC--------------------CCCCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            58999999999999997                    111223344433  89999999999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          81 EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        81 ~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ++|||||+||++.||+++++||
T Consensus       122 ~~VItVPayF~d~qR~at~~A~  143 (579)
T COG0443         122 DAVITVPAYFNDAQRQATKDAA  143 (579)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHH
Confidence            9999999999999999999986

>PRK11678 putative chaperone; Provisional

Probab=99.39  E-value=1.2e-12  Score=94.54  Aligned_cols=48  Identities=27%  Similarity=0.435  Sum_probs=43.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC-----HHHHHH---HHHhC
Q psy3998          55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN-----DSQRQA---TKDAG  102 (102)
Q Consensus        55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~-----~~qr~~---~~~Aa  102 (102)
                      .+|++++++|++||+.|+.++|.++.++|||||++|+     +.||++   +++||
T Consensus       125 ~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa  180 (450)
T PRK11678        125 LFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAA  180 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999     889877   46765

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=98.84  E-value=5.1e-09  Score=70.32  Aligned_cols=51  Identities=10%  Similarity=0.085  Sum_probs=46.0

Q ss_pred             eeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ..+.--+.++++|+++++.++.++|.++.++|||||++|++.||+++.+|+
T Consensus        34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~   84 (239)
T TIGR02529        34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI   84 (239)
T ss_pred             CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH
Confidence            345566789999999999999999999999999999999999999999874

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=98.38  E-value=8.4e-07  Score=62.17  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCccC--cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          56 PEEISSMVLTKMREIAEVYLGGKVS--EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        56 ~~ev~~~il~~l~~~ae~~~~~~~~--~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      --++++++|++++..++..+|..+.  ++|||||++|+..||+++.+|+
T Consensus        73 d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~  121 (335)
T PRK13929         73 DYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV  121 (335)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            3478999999999999888887664  7999999999999999999874

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=97.71  E-value=0.0001  Score=50.26  Aligned_cols=48  Identities=13%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .--+.+...|+++++.+++++|.++..++++||++|+..||.++.+|+
T Consensus        64 ~di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~  111 (267)
T PRK15080         64 VDFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVV  111 (267)
T ss_pred             eeHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHH
Confidence            336778889999999999999999999999999999999999888763

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=97.58  E-value=0.00017  Score=50.48  Aligned_cols=49  Identities=14%  Similarity=0.121  Sum_probs=36.6

Q ss_pred             echhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          54 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        54 ~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +...+++..+|+++.+.+....+.....+|||||++|++.||+++++|+
T Consensus        70 i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~  118 (336)
T PRK13928         70 IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA  118 (336)
T ss_pred             EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3455677888888886654332233347999999999999999999875

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=97.31  E-value=0.00067  Score=47.30  Aligned_cols=45  Identities=22%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             hhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          58 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        58 ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +.+..+++++.+......+.....+|+|+|++|+..||+++.+|+
T Consensus        79 ~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~  123 (335)
T PRK13930         79 EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA  123 (335)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            457777777776665544445688999999999999999998864

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=97.16  E-value=0.0011  Score=46.47  Aligned_cols=43  Identities=16%  Similarity=0.154  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        60 ~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +..++.++........+..-..+|+|||++|+..||+++.+|+
T Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~  121 (333)
T TIGR00904        79 TEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA  121 (333)
T ss_pred             HHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence            3444555544333222222238999999999999999998874

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=97.06  E-value=0.0017  Score=45.38  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        60 ~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +..++.++......... .-..+|+|+|++|++.||+++++|+
T Consensus        78 ~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~  119 (334)
T PRK13927         78 TEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESA  119 (334)
T ss_pred             HHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHH
Confidence            44555555544433222 2248999999999999999998874

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=95.61  E-value=0.024  Score=40.02  Aligned_cols=46  Identities=24%  Similarity=0.125  Sum_probs=30.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      -+++..+|+++.+.+.......--.++++||+.-|+.+|+++.+|+
T Consensus        71 ~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~  116 (326)
T PF06723_consen   71 YEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA  116 (326)
T ss_dssp             HHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3567777888777776532223457999999999999999999884

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=93.05  E-value=0.25  Score=35.01  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhC-CccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          57 EEISSMVLTKMREIAEVYLG-GKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        57 ~ev~~~il~~l~~~ae~~~~-~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      -+++..+|+++.+.+....+ ...-.+++.||..-++.+|+|+++||
T Consensus        78 ~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~  124 (342)
T COG1077          78 FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA  124 (342)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH
Confidence            35667778888777764433 23346999999999999999999985

>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases

Probab=89.27  E-value=1.2  Score=23.57  Aligned_cols=33  Identities=9%  Similarity=0.173  Sum_probs=24.9

Q ss_pred             HHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          68 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        68 ~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .+..+++...+  ...++.|+.+|..+|..+-+.|
T Consensus         5 ~~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a   37 (59)
T cd06007           5 NKALEDFRASD--NEEYEFPSSLTNHERAVIHRLC   37 (59)
T ss_pred             HHHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHH
Confidence            34455666555  7889999999999999887643

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF)

Probab=84.05  E-value=3.9  Score=21.71  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=26.0

Q ss_pred             HHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          67 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        67 l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      +.+..+++.... ....++.|+.++..+|..+-+.|
T Consensus         4 ~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a   38 (60)
T cd02640           4 YRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIA   38 (60)
T ss_pred             HHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHH
Confidence            455556666544 56788999999999999887643

NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>smart00842 FtsA Cell division protein FtsA

Probab=82.41  E-value=3.8  Score=26.30  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             eechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCC
Q psy3998          53 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYF   90 (102)
Q Consensus        53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f   90 (102)
                      ..-++ -++..++.+.+.+|+.+|.+++++++++|...
T Consensus        42 I~d~~-~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~   78 (187)
T smart00842       42 IVDIE-AAARAIREAVEEAERMAGVKIDSVYVGISGRH   78 (187)
T ss_pred             EECHH-HHHHHHHHHHHHHHHHhCCcccEEEEEEcCCc
Confidence            33444 45888899999999999999999999998653

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits

Probab=81.03  E-value=3.5  Score=22.29  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             cccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEE-cCceeeechhhhHHHHHH
Q psy3998           7 VFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEY-KGEIKKFAPEEISSMVLT   65 (102)
Q Consensus         7 i~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~~ev~~~il~   65 (102)
                      ...+++++|..++..++....++..|.+.. +++...+.+.. ..  -...+++|+-.+++
T Consensus         8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~--Di~~~~DliEEiaR   66 (70)
T PF03484_consen    8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRF--DIEHEEDLIEEIAR   66 (70)
T ss_dssp             HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTST--T-SSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcC--CcCcccHHHHHHHH
Confidence            456789999999998999999999999876 33333333322 11  23366666666553

This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-47
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		3e-45
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		5e-45
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		5e-45
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		6e-45
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		6e-45
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		6e-45
3cqx_A	386	Chaperone Complex Length = 386		6e-45
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		6e-45
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		7e-45
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		7e-45
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		7e-45
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		7e-45
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		7e-45
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		7e-45
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		7e-45
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		7e-45
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		8e-45
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		8e-45
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		8e-45
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		1e-44
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		2e-44
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		2e-44
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		2e-44
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		3e-44
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		1e-43
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		1e-43
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-43
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		1e-43
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		1e-43
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		1e-43
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		1e-43
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		1e-41
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		3e-41
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-40
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		1e-37
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		2e-36
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		2e-36
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		7e-36
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		1e-34
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		2e-34
2kho_A	605	Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP		2e-26
1dkg_D	383	Crystal Structure Of The Nucleotide Exchange Factor		3e-26
4b9q_A	605	Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L		3e-25
2v7y_A	509	Crystal Structure Of The Molecular Chaperone Dnak F		2e-15
3d2f_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		3e-07
3c7n_A	668	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		3e-07
2qxl_A	658	Crystal Structure Analysis Of Sse1, A Yeast Hsp110		3e-07
3d2e_A	675	Crystal Structure Of A Complex Of Sse1p And Hsp70,		2e-06
4gni_A	409	Structure Of The Ssz1 Atpase Bound To Atp And Magne		3e-04

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score =  184 bits (467), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 91/102 (89%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEEIS
Sbjct: 80  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 140 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAG 181

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  176 bits (446), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAG 159

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G PK+QVEYKGE K F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVS 117
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAG 159

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 87/101 (86%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           NP NT+FDAKRLIGRKFED  +Q D KHWPF VVS+GGKPK+QVEYKGE K F PEEISS
Sbjct: 63  NPTNTIFDAKRLIGRKFEDATVQSDXKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISS 122
Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
            VLTK +EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 123 XVLTKXKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAG 163

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score =  175 bits (444), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score =  175 bits (444), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score =  175 bits (443), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 66  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 125
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 126 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 167

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score =  175 bits (443), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 80  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 139
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 140 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 181

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score =  174 bits (442), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score =  174 bits (442), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score =  174 bits (442), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR F+D  +Q D+KHWPF VV+D G PK+QVEYKGE K F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRAFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVS 117
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAG 159

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 89/102 (87%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDA+RLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAERLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score =  173 bits (438), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDA RLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAARLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score =  173 bits (438), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQA KDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQAAKDAG 162

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDA RLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAMRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 64  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 123
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 124 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 165

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 64  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 123
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 124 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 165

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 83  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 142
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 143 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 184

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 65  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 124
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 125 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 166

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 59  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 118
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 119 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 160

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 61  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 162

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D+KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 61  LNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 162

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 85/102 (83%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGRKF D  +Q D KHWPF V++DG KPK+QV YKGE K F PEEIS
Sbjct: 61  LNPQNTVFDAKRLIGRKFGDPVVQSDXKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS 120
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S VLTK +EIAE YLG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 121 SXVLTKXKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAG 162

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score =  163 bits (412), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/102 (75%), Positives = 86/102 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP NTVFDAKRLIGRKF D  +Q D+KHWPF VVS+GGKPK++V Y+GE K F PEEIS
Sbjct: 81  LNPHNTVFDAKRLIGRKFADTTVQSDMKHWPFRVVSEGGKPKVRVCYRGEDKTFYPEEIS 140
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVL+KM+E AE YLG  V  AVITVPAYFNDSQRQATKDAG
Sbjct: 141 SMVLSKMKETAEAYLGQPVKHAVITVPAYFNDSQRQATKDAG 182

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 86/102 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP+NTVFDAKRLIGRKF D  +Q D+K WPF V+++GGKPK+ V YKGE K F PEEIS
Sbjct: 85  MNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEIS 144
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTK++E AE +LG  V+ AVITVPAYFNDSQRQATKDAG
Sbjct: 145 SMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAG 186

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 86/102 (84%)
Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           +NP+NTVFDAKRLIGR+F+D+ +Q+D+K WPF V+   G P I+V+Y  E K F+P+EIS
Sbjct: 66  LNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGNPVIEVQYLEETKTFSPQEIS 125
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +MVLTKM+EIAE  +G KV +AVITVPAYFND+QRQATKDAG
Sbjct: 126 AMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAG 167

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 82/101 (81%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISS 61
           NP+NT+FD KRLIG K+ D+ +Q+DIKH PF VV+  GKP ++V  KGE K F PEEIS 
Sbjct: 72  NPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISG 131
Query: 62  MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           M+L KM++IAE YLG KV+ AV+TVPAYFND+QRQATKDAG
Sbjct: 132 MILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAG 172

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score =  145 bits (365), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEIS 60
           NP+NTVFDAKRLIGRKF+DQ +Q D+ HWPF VV     KP I V Y GE K+F  EEIS
Sbjct: 77  NPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEIS 136
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +MVL KM+EI+E YLG ++  AV+TVPAYFNDSQRQATKDAG
Sbjct: 137 AMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAG 178

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score =  140 bits (354), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKG-EIKKFAPEEIS 60
           NP+NTVFDAKRLIGR + D  +Q+DIK  PF VV    KP IQV+  G + K FAPEEIS
Sbjct: 85  NPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEIS 144
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +MVLTKM+E AE YLG KV+ AV+TVPAYFND+QRQATKDAG
Sbjct: 145 AMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 186

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKG-EIKKFAPEEIS 60
           NP+NTVFDAKRLIGR + D  +Q+DIK  PF VV    KP IQV+  G + K FAPEEIS
Sbjct: 64  NPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEIS 123
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +MVLTKM+E AE YLG KV+ AV+TVPAYFND+QRQATKDAG
Sbjct: 124 AMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 165

>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 77/102 (75%), Gaps = 5/102 (4%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           NP+NT+F  KRLIGR+F+D+++Q D+   PF +++ D G     VE KG+  K AP +IS
Sbjct: 61  NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDA--WVEVKGQ--KMAPPQIS 116
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           + VL KM++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 117 AEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158

>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 77/102 (75%), Gaps = 5/102 (4%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           NP+NT+F  KRLIGR+F+D+++Q D+   PF +++ D G     VE KG+  K AP +IS
Sbjct: 61  NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDA--WVEVKGQ--KMAPPQIS 116
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           + VL KM++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 117 AEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158

>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 76/102 (74%), Gaps = 5/102 (4%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           NP+NT+F  KRLIGR+F+D+++Q D+   PF +++ D G     VE KG+  K AP +IS
Sbjct: 61  NPQNTLFAIKRLIGRRFQDEEVQRDVSIXPFKIIAADNGDA--WVEVKGQ--KXAPPQIS 116
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           + VL K ++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 117 AEVLKKXKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158

>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 9/96 (9%)
Query: 9   DAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEI--KKFAPEEISSMVLTK 66
           + +RL+G   + Q I       P T++S   K  +  +YK EI  K++ P+EIS+++L  
Sbjct: 44  NGERLVGEVAKRQAITN-----PNTIISI--KRHMGTDYKVEIEGKQYTPQEISAIILQY 96
Query: 67  MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           ++  AE YLG  V+ AVITVPAYFND+QRQATKDAG
Sbjct: 97  LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAG 132

>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           N KNTV + KR+IG  +     +++ KH+   +V  D  K   +V + GE   F+  +++
Sbjct: 60  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 119
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +M + K+++  +      +++  I VP ++ + QR    DA 
Sbjct: 120 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161

>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           N KNTV + KR+IG  +     +++ KH+   +V  D  K   +V + GE   F+  +++
Sbjct: 62  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 121
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +M + K+++  +      +++  I VP ++ + QR    DA 
Sbjct: 122 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 163

>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           N KNTV + KR+IG  +     +++ KH+   +V  D  K   +V + GE   F+  +++
Sbjct: 59  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 118
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +M + K+++  +      +++  I VP ++ + QR    DA 
Sbjct: 119 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 160

>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 2   NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEIS 60
           N KNTV + KR+IG  +     +++ KH+   +V  D  K   +V + GE   F+  +++
Sbjct: 60  NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 119
Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +  + K+++  +      +++  I VP ++ + QR    DA 
Sbjct: 120 AXFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161

>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 2   NPKNTVFDAKRLIGRKFED---------QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIK 52
           NPKNTV   + ++G+ F+             QE   +  FT+       K + E   E  
Sbjct: 71  NPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTI-------KDKAEEDAEPS 123
Query: 53  KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQR 95
                EI++  L ++   A  YLG KV+ AVIT+P  F + Q+
Sbjct: 124 TLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQK 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	1e-76
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	1e-76
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	3e-74
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	1e-65
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	6e-49
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	6e-45
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	7e-32
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	6e-04

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404

 Score =  230 bits (588), Expect = 1e-76
 Identities = 85/102 (83%), Positives = 91/102 (89%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NT+FDAKRLIGRKFED  +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEEIS
Sbjct: 80  MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLGGKV  AVITVPAYFNDSQRQATKDAG
Sbjct: 140 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAG 181

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554

 Score =  227 bits (582), Expect = 3e-74
 Identities = 78/102 (76%), Positives = 89/102 (87%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675

 Score =  207 bits (530), Expect = 1e-65
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEI 59
            N KNTV + KR+IG  +     +++ KH+   +V  D  K   +V + GE   F+  ++
Sbjct: 59  SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           ++M + K+++  +      +++  I VP ++ + QR    DA 
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383

 Score =  158 bits (401), Expect = 6e-49
 Identities = 58/103 (56%), Positives = 78/103 (75%), Gaps = 5/103 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
            NP+NT+F  KRLIGR+F+D+++Q D+   PF ++ +D G   ++V  KG  +K AP +I
Sbjct: 60  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQI 115

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+ VL KM++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605

 Score =  151 bits (384), Expect = 6e-45
 Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 5/103 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
            NP+NT+F  KRLIGR+F+D+++Q D+   PF ++ +D G   ++V+ +    K AP +I
Sbjct: 60  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQI 115

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+ VL KM++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509

 Score =  114 bits (289), Expect = 7e-32
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 28/102 (27%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
            NP NT+   KR +G  ++                         VE +G  K++ P+EIS
Sbjct: 59  TNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEIS 90

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           +++L  ++  AE YLG  V+ AVITVPAYFND+QRQATKDAG
Sbjct: 91  AIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAG 132

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 6/45 (13%), Positives = 17/45 (37%)

Query: 58  EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             +  ++ +++   E  LG ++ +A   +P        +A     
Sbjct: 71  IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVV 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.92
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.91
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.89
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.89
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.88
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.87
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.81
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.78
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.63
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	97.91
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	97.35
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	96.83
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	93.89
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	92.49

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.92  E-value=1.5e-24  Score=158.05  Aligned_cols=102  Identities=76%  Similarity=1.217  Sum_probs=96.4

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS   80 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~   80 (102)
                      +||.||++++|||||++++|+.++..++++||+++..+|.+.+.+.+.++.+.++|+++++++|++|++.|+.++|.++.
T Consensus        61 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~  140 (554)
T 1yuw_A           61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVT  140 (554)
T ss_dssp             TCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999999999999999999998778888899988887889999999999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          81 EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        81 ~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ++|||||++|++.||+++++||
T Consensus       141 ~~VitVPa~f~~~qr~a~~~A~  162 (554)
T 1yuw_A          141 NAVVTVPAYFNDSQRQATKDAG  162 (554)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHH
Confidence            9999999999999999999985

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.91  E-value=1.9e-24  Score=160.51  Aligned_cols=102  Identities=26%  Similarity=0.511  Sum_probs=95.2

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||+.++|+.++...+++||+++. .+|.+.+.+.+.|+.+.++|+++++|+|++|++.|+.++|.++
T Consensus        59 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v  138 (675)
T 3d2f_A           59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANI  138 (675)
T ss_dssp             TCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred             hChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            589999999999999999999999999999999876 4688888888887778999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       139 ~~~VITVPa~f~~~qR~a~~~Aa  161 (675)
T 3d2f_A          139 TDVCIAVPPWYTEEQRYNIADAA  161 (675)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999985

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.89  E-value=4.8e-23  Score=151.48  Aligned_cols=98  Identities=59%  Similarity=0.966  Sum_probs=89.2

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++|||||+.++++.++...+++||+++. ++|.+.+.+  .+  ..++|+++++++|++|++.|+.++|.++
T Consensus        60 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v  135 (605)
T 4b9q_A           60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV  135 (605)
T ss_dssp             TCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             hCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEECHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999999876 456555544  33  7899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       136 ~~~VITVPa~f~~~qr~a~~~Aa  158 (605)
T 4b9q_A          136 TEAVITVPAYFNDAQRQATKDAG  158 (605)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999985

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.89  E-value=1.1e-22  Score=142.59  Aligned_cols=102  Identities=83%  Similarity=1.280  Sum_probs=97.0

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS   80 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~   80 (102)
                      ++|.++++.+||+||++++++.++...+.|||.++.++|.+.+.+.+.++...++|+++++++|++|++.++.++|.++.
T Consensus        80 ~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~  159 (404)
T 3i33_A           80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVH  159 (404)
T ss_dssp             TCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            47999999999999999999999999999999998888999999999888889999999999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          81 EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        81 ~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ++|||||++|++.||+++++||
T Consensus       160 ~~vitvPa~~~~~~r~~~~~a~  181 (404)
T 3i33_A          160 SAVITVPAYFNDSQRQATKDAG  181 (404)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHH
Confidence            9999999999999999999985

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.87  E-value=3.6e-22  Score=146.80  Aligned_cols=98  Identities=59%  Similarity=0.966  Sum_probs=88.5

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||.||++++||+||+.++|+.++...+.+||+++. .+|.+.+.+  +|  +.++|+|+++++|++|++.|+.++|.++
T Consensus        60 ~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~v  135 (605)
T 2kho_A           60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV  135 (605)
T ss_dssp             TCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred             hCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            489999999999999999999999888899999864 566666555  44  6899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       136 ~~~VitVPa~f~d~qr~a~~~A~  158 (605)
T 2kho_A          136 TEAVITVPAYFNDAQRQATKDAG  158 (605)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999985

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.81  E-value=1.9e-19  Score=125.46  Aligned_cols=98  Identities=59%  Similarity=0.966  Sum_probs=86.8

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      ++|.++++++||+||+.++++.++...+.+|++++. .+|...+.+  ++  +.++|+++++++|+++++.|+.+++.++
T Consensus        60 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~~a~~~~~~~~  135 (383)
T 1dkg_D           60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV  135 (383)
T ss_dssp             TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            479999999999999999999898888889999764 456555554  43  5889999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++|||||++|++.||+++++||
T Consensus       136 ~~~vitvP~~~~~~~r~~~~~a~  158 (383)
T 1dkg_D          136 TEAVITVPAYFNDAQRQATKDAG  158 (383)
T ss_dssp             CEEEECBCTTCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999874

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.78  E-value=2.8e-19  Score=125.66  Aligned_cols=100  Identities=30%  Similarity=0.421  Sum_probs=85.2

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEc----CceeeechhhhHHHHHHHHHHHHHHHhC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK----GEIKKFAPEEISSMVLTKMREIAEVYLG   76 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~ev~~~il~~l~~~ae~~~~   76 (102)
                      +||.|++.++|++||++++++.++.  ..+++.+...+|.+.+.+...    ++.+.++|+||++++|++|++.|+.+++
T Consensus        70 ~~~~~~i~~~K~llg~~~~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~  147 (409)
T 4gni_A           70 RNPKNTVAYFRDILGQDFKSVDPTH--NHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLG  147 (409)
T ss_dssp             HCGGGEEESCGGGTTCCGGGCCCGG--GTTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hChHhhHHHHHHHhCCCccchhhhh--hccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhC
Confidence            3799999999999999988865543  344555566677777777654    3567999999999999999999999999


Q ss_pred             CccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          77 GKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        77 ~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++.++|||||++|++.||+++++||
T Consensus       148 ~~~~~~vitvPa~~~~~~r~~~~~a~  173 (409)
T 4gni_A          148 KKVTSAVITIPTNFTEKQKAALIAAA  173 (409)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999999985

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.63  E-value=1.5e-15  Score=109.80  Aligned_cols=74  Identities=57%  Similarity=0.933  Sum_probs=64.7

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS   80 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~   80 (102)
                      +|| |+++.+||+||++|.                         +..+|  ..++|+++++++|++|++.|+.++|.++.
T Consensus        59 ~~p-~~~~~~Kr~lg~p~~-------------------------~~~~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~~~  110 (509)
T 2v7y_A           59 TNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEISAIILQYLKSYAEDYLGEPVT  110 (509)
T ss_dssp             TCS-SEEECGGGTTTSCCC-------------------------EEETT--EEECHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             hCC-CcHHHHHHhcCCCcE-------------------------EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            478 999999999998432                         11233  47899999999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          81 EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        81 ~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ++|||||++|++.||+++++||
T Consensus       111 ~~VitvPa~~~~~qr~a~~~a~  132 (509)
T 2v7y_A          111 RAVITVPAYFNDAQRQATKDAG  132 (509)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHH
Confidence            9999999999999999999985

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=97.91  E-value=7e-06  Score=56.17  Aligned_cols=44  Identities=27%  Similarity=0.276  Sum_probs=33.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .++++.+++|++++..  ..++  ..++|||||++|++.||+++++|+
T Consensus        75 ~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~  118 (344)
T 1jce_A           75 VALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAG  118 (344)
T ss_dssp             HHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHH
Confidence            4677777777776543  1233  378999999999999999999874

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=97.35  E-value=3.4e-05  Score=53.24  Aligned_cols=50  Identities=20%  Similarity=0.145  Sum_probs=38.4

Q ss_pred             eeechhhhHHHHHHHHHHHHHHHhCCccCcEE--EEeCCCCCHHHHHHHHHhC
Q psy3998          52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAV--ITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~V--itVP~~f~~~qr~~~~~Aa  102 (102)
                      ..+++++..+|++..|+..++...+.+ .++|  |+||++|++.||+++++|+
T Consensus        93 ~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~  144 (346)
T 2fsj_A           93 GRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEAL  144 (346)
T ss_dssp             TCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             CcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHH
Confidence            455678899999999988764333444 4699  9999999999999999873

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=96.83  E-value=0.00092  Score=44.03  Aligned_cols=44  Identities=14%  Similarity=0.177  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998          58 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA  101 (102)
Q Consensus        58 ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A  101 (102)
                      +.+..+|+++++.++.+.+.+...+|+|+|++|+..+|+.+.++
T Consensus        71 ~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~  114 (272)
T 3h1q_A           71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHV  114 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHH
Confidence            67889999999999999898899999999999999999988775

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=93.89  E-value=0.09  Score=36.69  Aligned_cols=24  Identities=17%  Similarity=0.104  Sum_probs=21.3

Q ss_pred             cCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          79 VSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        79 ~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ...+|||+|++++..||+++.+++
T Consensus       107 ~~~vvit~p~~~~~~~r~~~~e~~  130 (418)
T 1k8k_A          107 DHYFLLTEPPLNTPENREYTAEIM  130 (418)
T ss_dssp             GCCEEEEECTTCCHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=92.49  E-value=0.2  Score=34.53  Aligned_cols=22  Identities=9%  Similarity=0.148  Sum_probs=19.3

Q ss_pred             CcEEEEeCCCCCHHHHHHHHHh
Q psy3998          80 SEAVITVPAYFNDSQRQATKDA  101 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~A  101 (102)
                      ..+|||+|++++..||+++.++
T Consensus       101 ~~vvit~p~~~~~~~r~~~~e~  122 (375)
T 2fxu_A          101 HPTLLTEAPLNPKANREKMTQI  122 (375)
T ss_dssp             SCEEEEECTTCCHHHHHHHHHH
T ss_pred             CcEEEEeCCCCcHHHHHHHHHH
Confidence            5699999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	1e-43
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	3e-38
d1jcea1	137	c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB	2e-08

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  137 bits (347), Expect = 1e-43
 Identities = 78/102 (76%), Positives = 89/102 (87%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score =  124 bits (312), Expect = 3e-38
 Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 5/103 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
            NP+NT+F  KRLIGR+F+D+++Q D+   PF ++ +D G   ++V+ +    K AP +I
Sbjct: 58  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQI 113

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+ VL KM++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 114 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 156

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.7 bits (110), Expect = 2e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 53  KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             A   ++ ++L      A+  +       VI VP    D +R+A  DAG
Sbjct: 66  VIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.95
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.94
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	99.25
d1jjcb2	75	Domains B1 and B5 of PheRS-beta, PheT {Thermus the	80.23

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.1e-27  Score=150.81  Aligned_cols=102  Identities=76%  Similarity=1.217  Sum_probs=97.0

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS   80 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~   80 (102)
                      +||+++++++|||||++++|+.++...+.+++.++.+++.....+...++.+.++|+||++|+|++|++.|+.++|.++.
T Consensus        58 ~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~  137 (185)
T d1bupa1          58 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVT  137 (185)
T ss_dssp             TCGGGEECCHHHHTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             cCcccchhHHHHHhCCCCccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            58999999999999999999999999999999988888888888888888899999999999999999999999999999


Q ss_pred             cEEEEeCCCCCHHHHHHHHHhC
Q psy3998          81 EAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        81 ~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ++|||||++|++.||+++++||
T Consensus       138 ~~VitvPa~f~~~qr~~~~~Aa  159 (185)
T d1bupa1         138 NAVVTVPAYFNDSQRQATKDAG  159 (185)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHH
Confidence            9999999999999999999986

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.94  E-value=1.1e-26  Score=147.32  Aligned_cols=98  Identities=57%  Similarity=0.913  Sum_probs=87.9

Q ss_pred             CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998           1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV   79 (102)
Q Consensus         1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~   79 (102)
                      +||+|+++++|||||+.++|+.++.....+||+++. ++|...+.  ..  .+.++|++|++++|++|++.|++++|.++
T Consensus        58 ~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~s~~~l~a~~L~~l~~~a~~~~~~~~  133 (183)
T d1dkgd1          58 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVE--VK--GQKMAPPQISAEVLKKMKKTAEDYLGEPV  133 (183)
T ss_dssp             TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEE--ET--TEEECHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cCCccEEeeeHHHcCCCCCcHHHHhhhhcCCEEEEEcCCCcEEEE--EC--CEEECHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999998999999876 45554433  33  37799999999999999999999999999


Q ss_pred             CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          80 SEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        80 ~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      .+||||||++|++.||+++++||
T Consensus       134 ~~~VitVPa~f~~~~r~~l~~Aa  156 (183)
T d1dkgd1         134 TEAVITVPAYFNDAQRQATKDAG  156 (183)
T ss_dssp             CEEEECBCTTCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999999996

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=4.4e-12  Score=75.85  Aligned_cols=52  Identities=25%  Similarity=0.183  Sum_probs=48.9

Q ss_pred             eeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998          51 IKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG  102 (102)
Q Consensus        51 ~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa  102 (102)
                      ...+++.++..+++.+++..++...+.++.++|||||++|++.||+++++||
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa  115 (137)
T d1jcea1          64 DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG  115 (137)
T ss_dssp             TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999986

>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: Domains B1 and B5 of PheRS-beta, PheT
domain: Domains B1 and B5 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=80.23  E-value=0.78  Score=23.26  Aligned_cols=56  Identities=18%  Similarity=0.164  Sum_probs=36.0

Q ss_pred             cccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCce-eeechhhhHHHHH
Q psy3998           7 VFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEI-KKFAPEEISSMVL   64 (102)
Q Consensus         7 i~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~ev~~~il   64 (102)
                      ...+++++|..++..++.....++.|++..+++.  +.+..-... -...+++++-.++
T Consensus         9 ~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~~~~~~--~~V~vPs~R~Di~~~~DliEEi~   65 (75)
T d1jjcb2           9 PEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPT--YRVTPPSHRLDLRLEEDLVEEVA   65 (75)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHTTCEEECSSSS--EEEECCTTCTTCCSHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHcCCceEecCCc--EEEecchhccccCCcchHHHHHH
Confidence            3467899999999999999999999996544332  334321111 1235566665554