Psyllid ID: psy4004

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MKNNISFRPQRSASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDP
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccEEEcccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHcHHHccHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHccccccHHHHHHHHHHHHHHHHcccHHHccccHHEEHHHHHccHHHHHHHHHHHHHHHcHHHHHcHHHccccccHHHHHHHHHHHHHHHHHcccc
mknnisfrpqrsasvGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVisgetlpkpdrgkmrfHKIANVNKALDFIASKGVKLVSIGaeeivdgnlkMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWcqrktapyknvnvqnfhlsFKDGLAFCALIHRhrpelidyhklskdnplqnLNTAFDVAEkyldiprmldpedlintpkpderAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDP
mknnisfrpqrsasvGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISgetlpkpdrgkmRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDP
MKNNISFRPQRSASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDP
**************VGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKV******************
***********************AVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF****************LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF****************TAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLME**ER*****
**********RSASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLM**********
************ASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLA***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKNNISFRPQRSASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKxxxxxxxxxxxxxxxxxxxxxP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
P18091 924 Alpha-actinin, sarcomeric yes N/A 0.912 0.314 0.909 1e-161
Q7PKQ5 922 Alpha-actinin, sarcomeric yes N/A 0.896 0.310 0.842 1e-144
Q0III9 901 Alpha-actinin-3 OS=Bos ta yes N/A 0.821 0.290 0.748 1e-129
O88990 900 Alpha-actinin-3 OS=Mus mu yes N/A 0.821 0.291 0.748 1e-129
Q08043 901 Alpha-actinin-3 OS=Homo s yes N/A 0.821 0.290 0.748 1e-129
P20111 897 Alpha-actinin-2 OS=Gallus yes N/A 0.821 0.292 0.738 1e-128
Q3ZC55 894 Alpha-actinin-2 OS=Bos ta no N/A 0.821 0.293 0.734 1e-127
P35609 894 Alpha-actinin-2 OS=Homo s no N/A 0.821 0.293 0.734 1e-127
Q9JI91 894 Alpha-actinin-2 OS=Mus mu no N/A 0.821 0.293 0.734 1e-127
P05094 893 Alpha-actinin-1 OS=Gallus no N/A 0.821 0.293 0.738 1e-126
>sp|P18091|ACTN_DROME Alpha-actinin, sarcomeric OS=Drosophila melanogaster GN=Actn PE=2 SV=2 Back     alignment and function desciption
 Score =  567 bits (1460), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/298 (90%), Positives = 278/298 (93%), Gaps = 7/298 (2%)

Query: 21  FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRG 80
            L     K    TFTAWCNSHLRKAGTAI+NIEEDFRNGLKLMLLLEVISGETLPKPDRG
Sbjct: 27  LLDPAWEKQQKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRG 86

Query: 81  KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 140
           KMRFHKIANVNKALDFIASKGV LVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE
Sbjct: 87  KMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 146

Query: 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ 200
           MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRP+LIDY KLSKDNPL+
Sbjct: 147 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLE 206

Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHM 260
           NLNTAFDVAEKYLDIPRMLDP+DLINTPKPDERAIMTYVSCYYHAFQGAQQV +      
Sbjct: 207 NLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGN------ 260

Query: 261 TNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 318
            NTA+PDERA+MTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD
Sbjct: 261 -NTALPDERAVMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 317
F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.
Drosophila melanogaster (taxid: 7227)
>sp|Q7PKQ5|ACTN_ANOGA Alpha-actinin, sarcomeric OS=Anopheles gambiae GN=Actn PE=3 SV=2 Back     alignment and function description
>sp|Q0III9|ACTN3_BOVIN Alpha-actinin-3 OS=Bos taurus GN=ACTN3 PE=2 SV=1 Back     alignment and function description
>sp|O88990|ACTN3_MOUSE Alpha-actinin-3 OS=Mus musculus GN=Actn3 PE=2 SV=1 Back     alignment and function description
>sp|Q08043|ACTN3_HUMAN Alpha-actinin-3 OS=Homo sapiens GN=ACTN3 PE=1 SV=2 Back     alignment and function description
>sp|P20111|ACTN2_CHICK Alpha-actinin-2 OS=Gallus gallus GN=ACTN2 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZC55|ACTN2_BOVIN Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2 SV=1 Back     alignment and function description
>sp|P35609|ACTN2_HUMAN Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JI91|ACTN2_MOUSE Alpha-actinin-2 OS=Mus musculus GN=Actn2 PE=1 SV=2 Back     alignment and function description
>sp|P05094|ACTN1_CHICK Alpha-actinin-1 OS=Gallus gallus GN=ACTN1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
350407892 937 PREDICTED: alpha-actinin, sarcomeric-lik 0.934 0.318 0.886 1e-160
340721947 937 PREDICTED: alpha-actinin, sarcomeric-lik 0.934 0.318 0.886 1e-160
322786960 899 hypothetical protein SINV_01199 [Solenop 0.905 0.321 0.924 1e-160
270005784 923 hypothetical protein TcasGA2_TC007894 [T 0.902 0.312 0.916 1e-160
328791347 885 PREDICTED: alpha-actinin, sarcomeric [Ap 0.934 0.336 0.897 1e-159
383847237 934 PREDICTED: alpha-actinin, sarcomeric-lik 0.934 0.319 0.898 1e-159
13124689 924 RecName: Full=Alpha-actinin, sarcomeric; 0.912 0.314 0.909 1e-159
194912870 921 GG12661 [Drosophila erecta] gi|190648258 0.902 0.312 0.906 1e-158
194768725 921 GF21987 [Drosophila ananassae] gi|190617 0.902 0.312 0.906 1e-158
195130251 921 GI15429 [Drosophila mojavensis] gi|19390 0.902 0.312 0.906 1e-158
>gi|350407892|ref|XP_003488231.1| PREDICTED: alpha-actinin, sarcomeric-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/308 (88%), Positives = 283/308 (91%), Gaps = 10/308 (3%)

Query: 21  FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRG 80
            L     K    TFTAWCNSHLRKAGTAIE+IEEDFRNGLKLMLLLEVISGETLP+PDRG
Sbjct: 23  LLDPAWEKQQKKTFTAWCNSHLRKAGTAIESIEEDFRNGLKLMLLLEVISGETLPRPDRG 82

Query: 81  KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 140
           KMRFHKIANVNKALD+IASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE
Sbjct: 83  KMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 142

Query: 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ 200
           MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRP+LIDY+KLSKDNPL+
Sbjct: 143 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYNKLSKDNPLE 202

Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV-------- 252
           NLNTAFDVAEKYLDIPRMLDP+DLINTPKPDERAIMTYVSCYYHAFQGAQQV        
Sbjct: 203 NLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVSVKKCVLF 262

Query: 253 --FHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLME 310
             F  +  +M NTAMPDERA+MTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLME
Sbjct: 263 PYFGYKTTYMRNTAMPDERAVMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLME 322

Query: 311 EYERLASD 318
           EYERLASD
Sbjct: 323 EYERLASD 330

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340721947|ref|XP_003399374.1| PREDICTED: alpha-actinin, sarcomeric-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|322786960|gb|EFZ13184.1| hypothetical protein SINV_01199 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|270005784|gb|EFA02232.1| hypothetical protein TcasGA2_TC007894 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328791347|ref|XP_001121589.2| PREDICTED: alpha-actinin, sarcomeric [Apis mellifera] Back     alignment and taxonomy information
>gi|383847237|ref|XP_003699261.1| PREDICTED: alpha-actinin, sarcomeric-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|13124689|sp|P18091.2|ACTN_DROME RecName: Full=Alpha-actinin, sarcomeric; AltName: Full=F-actin cross-linking protein gi|3702109|emb|CAA21121.1| EG:133E12.1 [Drosophila melanogaster] gi|3702125|emb|CAA15689.1| EG:133E12.1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194912870|ref|XP_001982582.1| GG12661 [Drosophila erecta] gi|190648258|gb|EDV45551.1| GG12661 [Drosophila erecta] Back     alignment and taxonomy information
>gi|194768725|ref|XP_001966462.1| GF21987 [Drosophila ananassae] gi|190617226|gb|EDV32750.1| GF21987 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195130251|ref|XP_002009566.1| GI15429 [Drosophila mojavensis] gi|193908016|gb|EDW06883.1| GI15429 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
FB|FBgn0000667 924 Actn "alpha actinin" [Drosophi 0.890 0.307 0.927 1.1e-142
ZFIN|ZDB-GENE-000329-9 896 actn3a "actinin alpha 3a" [Dan 0.937 0.333 0.673 2.2e-105
UNIPROTKB|E2RIM9 1041 ACTN3 "Uncharacterized protein 0.702 0.215 0.875 2.8e-105
ZFIN|ZDB-GENE-030131-2040 898 actn3b "actinin alpha 3b" [Dan 0.702 0.249 0.866 5.8e-105
UNIPROTKB|Q0III9 901 ACTN3 "Alpha-actinin-3" [Bos t 0.702 0.248 0.870 5.8e-105
UNIPROTKB|Q08043 901 ACTN3 "Alpha-actinin-3" [Homo 0.702 0.248 0.870 5.8e-105
UNIPROTKB|F1RU49 903 LOC100519531 "Uncharacterized 0.702 0.248 0.870 5.8e-105
UNIPROTKB|I3LCP0 913 LOC100519531 "Uncharacterized 0.702 0.245 0.870 5.8e-105
MGI|MGI:99678 900 Actn3 "actinin alpha 3" [Mus m 0.702 0.248 0.870 5.8e-105
RGD|621792 900 Actn3 "actinin alpha 3" [Rattu 0.702 0.248 0.870 5.8e-105
FB|FBgn0000667 Actn "alpha actinin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
 Identities = 270/291 (92%), Positives = 277/291 (95%)

Query:    28 KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
             K    TFTAWCNSHLRKAGTAI+NIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI
Sbjct:    34 KQQKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 93

Query:    88 ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 147
             ANVNKALDFIASKGV LVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGL
Sbjct:    94 ANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 153

Query:   148 LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFD 207
             LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRP+LIDY KLSKDNPL+NLNTAFD
Sbjct:   154 LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFD 213

Query:   208 VAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPD 267
             VAEKYLDIPRMLDP+DLINTPKPDERAIMTYVSCYYHAFQGAQQV +       NTA+PD
Sbjct:   214 VAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGN-------NTALPD 266

Query:   268 ERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 318
             ERA+MTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD
Sbjct:   267 ERAVMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 317
GO:0007629 "flight behavior" evidence=IMP
GO:0051017 "actin filament bundle assembly" evidence=ISS;NAS
GO:0051015 "actin filament binding" evidence=ISS
GO:0005509 "calcium ion binding" evidence=ISS
GO:0003779 "actin binding" evidence=ISS
GO:0005925 "focal adhesion" evidence=ISS
GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=ISS
GO:0051764 "actin crosslink formation" evidence=IEA
GO:0031532 "actin cytoskeleton reorganization" evidence=IMP
GO:0030018 "Z disc" evidence=IDA
GO:0045214 "sarcomere organization" evidence=IMP
ZFIN|ZDB-GENE-000329-9 actn3a "actinin alpha 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIM9 ACTN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2040 actn3b "actinin alpha 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0III9 ACTN3 "Alpha-actinin-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q08043 ACTN3 "Alpha-actinin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RU49 LOC100519531 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LCP0 LOC100519531 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:99678 Actn3 "actinin alpha 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621792 Actn3 "actinin alpha 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7PKQ5ACTN_ANOGANo assigned EC number0.84280.89650.3101yesN/A
Q08043ACTN3_HUMANNo assigned EC number0.74830.82130.2907yesN/A
P20111ACTN2_CHICKNo assigned EC number0.73820.82130.2920yesN/A
O88990ACTN3_MOUSENo assigned EC number0.74830.82130.2911yesN/A
Q0III9ACTN3_BOVINNo assigned EC number0.74830.82130.2907yesN/A
P18091ACTN_DROMENo assigned EC number0.90930.91220.3149yesN/A
P05095ACTNA_DICDINo assigned EC number0.63180.68650.2543yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
COG5069 612 COG5069, SAC6, Ca2+-binding actin-bundling protein 4e-62
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 1e-32
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 2e-27
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 2e-23
smart00033101 smart00033, CH, Calponin homology domain 2e-23
smart00033101 smart00033, CH, Calponin homology domain 3e-23
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 6e-23
pfam1197185 pfam11971, CAMSAP_CH, CAMSAP CH domain 1e-14
COG5069612 COG5069, SAC6, Ca2+-binding actin-bundling protein 2e-04
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information 
 Score =  207 bits (528), Expect = 4e-62
 Identities = 96/231 (41%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 22  LQAVHAKSHLLTFTAWCNSHLRKAGT-AIENIEEDFRNGLKLMLLLEVISGETLPKPDRG 80
            Q V  K    TFT W N  L   G     +++ D ++G+KL  LLE +  +   + +  
Sbjct: 6   WQKVQKK----TFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNET 61

Query: 81  K-MRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE 139
              R H + NV+  L+FI  KGVKL +IG ++IVDGN K+ LG+IW++I R  I  I+ E
Sbjct: 62  PETRIHVMENVSGRLEFIKGKGVKLFNIGPQDIVDGNPKLILGLIWSLISRLTIATINEE 121

Query: 140 -EMTAKEGLLLWCQRKTAPYKN-VNVQNFHLSFKDGLAFCALIHRHRPELIDY--HKLSK 195
            E+T    LLLWC   T  YK  V+  +F  S++DGLAF ALIH  RP+ +D     L K
Sbjct: 122 GELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQK 181

Query: 196 DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
            N   N   AF+ A K + I R++  ED++N   PDER+IMTYVS Y   F
Sbjct: 182 KNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRF 232

Length = 612
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain Back     alignment and domain information
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
KOG0517|consensus 2473 100.0
KOG0035|consensus 890 100.0
COG5069 612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 100.0
KOG0046|consensus627 99.97
KOG0046|consensus 627 99.97
cd00014107 CH Calponin homology domain; actin-binding domain 99.76
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.74
smart00033103 CH Calponin homology domain. Actin binding domains 99.74
cd00014107 CH Calponin homology domain; actin-binding domain 99.68
KOG3631|consensus365 99.66
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.64
smart00033103 CH Calponin homology domain. Actin binding domains 99.58
KOG3631|consensus365 99.3
COG5069612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 99.27
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 99.26
KOG0518|consensus 1113 99.05
KOG2046|consensus193 98.83
KOG0035|consensus 890 98.45
KOG0517|consensus 2473 98.2
KOG0516|consensus 1047 98.13
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 97.97
COG5199178 SCP1 Calponin [Cytoskeleton] 97.85
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 97.48
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 97.26
KOG0532|consensus722 95.35
KOG2046|consensus193 95.09
KOG2996|consensus 865 94.56
KOG2996|consensus 865 92.68
KOG2128|consensus 1401 92.3
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 87.83
KOG0532|consensus722 87.62
COG5261 1054 IQG1 Protein involved in regulation of cellular mo 87.4
KOG3000|consensus 295 81.69
COG5199178 SCP1 Calponin [Cytoskeleton] 81.48
>KOG0517|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-80  Score=642.63  Aligned_cols=268  Identities=53%  Similarity=0.879  Sum_probs=258.7

Q ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHH
Q psy4004          13 ASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK   92 (319)
Q Consensus        13 ~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~   92 (319)
                      =+.+||+. |+++++.+||||||+|||+||...++.|.|||+||+||+.|++|||+|||+.+|+|.+++||+|++||+++
T Consensus        33 FErsRIKa-LadERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdK  111 (2473)
T KOG0517|consen   33 FERSRIKA-LADEREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDK  111 (2473)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHH
Confidence            46788954 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh------hhhhhhHHHHHHHhhhCCCCCcccccC
Q psy4004          93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE------EMTAKEGLLLWCQRKTAPYKNVNVQNF  166 (319)
Q Consensus        93 aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~------~~~~k~~LL~W~q~~~~~~~~v~V~nf  166 (319)
                      ||+|++...|.+.|||++||||||..+||||||+||++|||++|+++      ..|+|++||.|||.+|+|||+|+|+||
T Consensus       112 aLqFLkeqkVhLEniGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nF  191 (2473)
T KOG0517|consen  112 ALQFLKEQKVHLENIGSHDIVDGNHRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNF  191 (2473)
T ss_pred             HHHHHHhcccccccCCcccccCCcchhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccC
Confidence            99999999999999999999999999999999999999999999875      578999999999999999999999999


Q ss_pred             CCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHh
Q psy4004         167 HLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF  246 (319)
Q Consensus       167 s~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f  246 (319)
                      |+||+||++|+||||+||||++||+++.++++.+|++.||++|+++|||++||||||+ ++..||||||||||+.|||||
T Consensus       192 TtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV-~v~~PDEKSIITYV~~YYHyF  270 (2473)
T KOG0517|consen  192 TTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDV-NVEQPDEKSIITYVVTYYHYF  270 (2473)
T ss_pred             ccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhc-CccCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999996 788999999999999999999


Q ss_pred             cccchhhhhhhccccCCCCCcchhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4004         247 QGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD  318 (319)
Q Consensus       247 ~~~~~~~~~~~~~~~n~~~~de~~i~~yv~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
                      +                                    ++....+.++||+||++.++++++|+++||.++||
T Consensus       271 s------------------------------------KmK~~~v~gKRIgkVl~~lme~ekm~~~YE~Lasd  306 (2473)
T KOG0517|consen  271 S------------------------------------KMKQLAVEGKRIGKVLDQLMETEKMIEQYEGLASD  306 (2473)
T ss_pred             H------------------------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9                                    66666688999999999999999999999999986

>KOG0035|consensus Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0046|consensus Back     alignment and domain information
>KOG0046|consensus Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>KOG3631|consensus Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>KOG3631|consensus Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>KOG0518|consensus Back     alignment and domain information
>KOG2046|consensus Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>KOG0517|consensus Back     alignment and domain information
>KOG0516|consensus Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>COG5199 SCP1 Calponin [Cytoskeleton] Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG0532|consensus Back     alignment and domain information
>KOG2046|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG2128|consensus Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0532|consensus Back     alignment and domain information
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] Back     alignment and domain information
>KOG3000|consensus Back     alignment and domain information
>COG5199 SCP1 Calponin [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1sjj_A 863 Cryo-Em Structure Of Chicken Gizzard Smooth Muscle 1e-125
1tjt_A250 X-Ray Structure Of The Human Alpha-Actinin Isoform 1e-118
1wku_A254 High Resolution Structure Of The Human Alpha-Actini 1e-118
2eyi_A234 Crystal Structure Of The Actin-Binding Domain Of Hu 1e-114
2r0o_A237 Crystal Structure Of The Actin-Binding Domain Of Hu 1e-111
3f7p_A296 Crystal Structure Of A Complex Between Integrin Bet 3e-60
1sh5_A245 Crystal Structure Of Actin-Binding Domain Of Mouse 1e-58
1mb8_A243 Crystal Structure Of The Actin Binding Domain Of Pl 3e-58
3lue_K109 Model Of Alpha-Actinin Ch1 Bound To F-Actin Length 1e-52
1qag_A226 Actin Binding Region Of The Dystrophin Homologue Ut 9e-46
1dxx_A246 N-Terminal Actin-Binding Domain Of Human Dystrophin 7e-45
4b7l_A347 Crystal Structure Of Human Filamin B Actin Binding 3e-35
2wa5_A245 Crystal Structure Of Human Filamin B Actin Binding 1e-34
2wa7_A245 Structure Of The M202v Mutant Of Human Filamin B Ac 1e-34
3hop_A272 Structure Of The Actin-Binding Domain Of Human Fila 2e-33
3fer_A262 Crystal Structure Of N-Terminal Actin-Binding Domai 2e-33
2wfn_A278 Filamin A Actin Binding Domain Length = 278 2e-33
2wa6_A245 Structure Of The W148r Mutant Of Human Filamin B Ac 5e-33
3hoc_A272 Structure Of The Actin-Binding Domain Of Human Fila 6e-33
1bkr_A109 Calponin Homology (Ch) Domain From Human Beta-Spect 7e-31
1aa2_A108 Calponin Homology (Ch) Domain From Human Beta-Spect 7e-31
1wyq_A127 Solution Structure Of The Second Ch Domain Of Human 8e-31
2d87_A128 Solution Structure Of The Ch Domain From Human Smoo 1e-22
2d88_A121 Solution Structure Of The Ch Domain From Human Mica 3e-21
2e9k_A121 Solution Structure Of The Ch Domain From Human Mica 3e-21
1bhd_A118 Second Calponin Homology Domain From Utrophin Lengt 5e-20
2jv9_A119 The Solution Structure Of Calponin Homology Domain 3e-17
2d89_A119 Solution Structure Of The Ch Domain From Human Eh D 8e-17
2dk9_A118 Solution Structure Of Calponin Homology Domain Of H 1e-12
1wyl_A116 Solution Structure Of The Ch Domain Of Human Nedd9 1e-12
3byh_B231 Model Of Actin-Fimbrin Abd2 Complex Length = 231 3e-10
2yrn_A129 Solution Structure Of The Ch Domain From Human Neur 7e-10
1pxy_A506 Crystal Structure Of The Actin-Crosslinking Core Of 2e-09
1rt8_A513 Crystal Structure Of The Actin-Crosslinking Core Of 3e-08
1rt8_A 513 Crystal Structure Of The Actin-Crosslinking Core Of 2e-04
2k2r_A129 The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 C 4e-05
2vzc_A131 Crystal Structure Of The C-Terminal Calponin Homolo 5e-05
3kmw_B129 Crystal Structure Of The IlkALPHA-Parvin Core Compl 5e-05
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863 Back     alignment and structure 
Iteration: 1

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/291 (74%), Positives = 236/291 (81%), Gaps = 36/291 (12%)
Query: 28  KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
           K    TFTAWCNSHLRKAGT IENIEEDFR+GLKLMLLLEVISGE L KP+RGKMR HKI
Sbjct: 7   KQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKI 66
Query: 88  ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 147
           +NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTIILRFAIQDISVEE +AKEGL
Sbjct: 67  SNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGL 126
Query: 148 LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFD 207
           LLW QRKTAPYKNVN+QNFH+S+KDGL FCALIHRHRPELIDY KL KD+PL NLNTAFD
Sbjct: 127 LLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFD 186
Query: 208 VAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPD 267
           VAEKYLDIP+MLD ED++ T +PDE+AIMTYVS +YHAF                     
Sbjct: 187 VAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAF--------------------- 225
Query: 268 ERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 318
                          SGAQKAETAANRICKVL VNQENE+LME+YE+LASD
Sbjct: 226 ---------------SGAQKAETAANRICKVLAVNQENEQLMEDYEKLASD 261
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250 Back     alignment and structure
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254 Back     alignment and structure
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234 Back     alignment and structure
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237 Back     alignment and structure
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296 Back     alignment and structure
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245 Back     alignment and structure
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243 Back     alignment and structure
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin Length = 109 Back     alignment and structure
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226 Back     alignment and structure
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246 Back     alignment and structure
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain With 1st Filamin Repeat Length = 347 Back     alignment and structure
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain At 1.9 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin Binding Domain At 1.85 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Length = 272 Back     alignment and structure
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From Human Filamin B (Tandem Ch-Domains). Northeast Structural Genomics Consortium Target Hr5571a. Length = 262 Back     alignment and structure
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain Length = 278 Back     alignment and structure
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin Binding Domain At 1.95 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Mutant E254k Length = 272 Back     alignment and structure
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109 Back     alignment and structure
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108 Back     alignment and structure
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127 Back     alignment and structure
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128 Back     alignment and structure
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121 Back     alignment and structure
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121 Back     alignment and structure
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin Length = 118 Back     alignment and structure
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From Smoothelin-Like 1 Length = 119 Back     alignment and structure
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain Binding Protein 1 Length = 119 Back     alignment and structure
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human Mical-1 Length = 118 Back     alignment and structure
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9 Interacting Protein With Calponin Homology And Lim Domains Length = 116 Back     alignment and structure
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex Length = 231 Back     alignment and structure
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron Navigator 2 Length = 129 Back     alignment and structure
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Arabidopsis Fimbrin Length = 506 Back     alignment and structure
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Schizosaccharomyces Pombe Fimbrin Length = 513 Back     alignment and structure
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Schizosaccharomyces Pombe Fimbrin Length = 513 Back     alignment and structure
>pdb|2K2R|A Chain A, The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 COMPLEX Length = 129 Back     alignment and structure
>pdb|2VZC|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology Domain Of Alpha Parvin Length = 131 Back     alignment and structure
>pdb|3KMW|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 129 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 1e-114
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 1e-102
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 1e-100
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 6e-96
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 3e-90
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 7e-90
3hoc_A272 Filamin-A; calponin homology domain, actin binding 3e-89
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 4e-83
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 3e-04
1pxy_A 506 Fimbrin-like protein; calponin homology, F-actin-b 4e-76
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 1e-69
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 8e-09
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 2e-69
1rt8_A 513 Fimbrin; filamentous actin binding domain (ABD), c 3e-68
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 3e-10
2d88_A121 Protein mical-3; all alpha, calponin homology doma 2e-69
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 4e-69
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 2e-67
1wyl_A116 NEDD9 interacting protein with calponin homology a 6e-67
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 2e-66
1bhd_A118 Utrophin; calponin homology, actin binding, struct 3e-66
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 2e-64
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 7e-46
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 6e-44
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
 Score =  329 bits (844), Expect = e-114
 Identities = 194/220 (88%), Positives = 209/220 (95%)

Query: 33  TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
           TFTAWCNSHLRKAGT IENIEEDFRNGLKLMLLLEVISGE LP+PD+GKMRFHKIANVNK
Sbjct: 31  TFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNK 90

Query: 93  ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQ 152
           ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE +AKEGLLLWCQ
Sbjct: 91  ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQ 150

Query: 153 RKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKY 212
           RKTAPY+NVNVQNFH S+KDGLA CALIHRHRP+LIDY KL KD+P+ NLNTAF+VAEKY
Sbjct: 151 RKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKY 210

Query: 213 LDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
           LDIP+MLD ED++NTPKPDE+AIMTYVSC+YHAF GA+Q 
Sbjct: 211 LDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQA 250
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121 Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128 Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 100.0
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 100.0
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 100.0
3hoc_A272 Filamin-A; calponin homology domain, actin binding 100.0
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 100.0
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 100.0
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 100.0
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 100.0
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 100.0
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 100.0
1rt8_A 513 Fimbrin; filamentous actin binding domain (ABD), c 100.0
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 100.0
1pxy_A 506 Fimbrin-like protein; calponin homology, F-actin-b 100.0
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 100.0
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 100.0
2d88_A121 Protein mical-3; all alpha, calponin homology doma 100.0
1wyl_A116 NEDD9 interacting protein with calponin homology a 100.0
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 100.0
1bhd_A118 Utrophin; calponin homology, actin binding, struct 100.0
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 100.0
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 100.0
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.96
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 99.89
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 99.64
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 99.31
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 99.3
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 99.24
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 99.21
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 99.2
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 99.14
1ujo_A144 Transgelin; CH domain, actin binding, structural g 99.09
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.05
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.04
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 99.02
1wyl_A116 NEDD9 interacting protein with calponin homology a 98.99
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 98.96
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 98.95
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 98.94
2d88_A121 Protein mical-3; all alpha, calponin homology doma 98.94
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 98.91
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 98.88
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 98.82
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 98.82
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 98.76
1bhd_A118 Utrophin; calponin homology, actin binding, struct 98.76
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 98.64
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 98.62
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 98.57
3hoc_A272 Filamin-A; calponin homology domain, actin binding 98.52
2qjz_A123 Microtubule-associated protein RP/EB family member 98.51
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 98.51
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 98.47
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 98.46
4b7l_A 347 Filamin-B; structural protein, FR 1 filamin hinge 98.41
2qjz_A123 Microtubule-associated protein RP/EB family member 98.09
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 98.07
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 97.99
1ujo_A144 Transgelin; CH domain, actin binding, structural g 97.82
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 97.79
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 97.76
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 97.76
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 97.75
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 97.73
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 97.66
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 97.65
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 97.63
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 97.59
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 97.57
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 97.4
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 97.37
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 97.3
2r8u_A268 Microtubule-associated protein RP/EB family member 97.13
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 96.84
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 96.79
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 96.74
2r8u_A268 Microtubule-associated protein RP/EB family member 96.7
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 96.68
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 95.79
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 94.12
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 86.04
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
Probab=100.00  E-value=3.4e-65  Score=466.06  Aligned_cols=238  Identities=82%  Similarity=1.291  Sum_probs=219.1

Q ss_pred             chhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHH
Q psy4004          12 SASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN   91 (319)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~   91 (319)
                      +.+.++. ..++++|+.+|+++|++|||++|.+.+..|+||++||+||++||+|+|+|+|++++++..+.+|++++||++
T Consensus        11 ~~~~~~~-~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~   89 (254)
T 1wku_A           11 EEDWDRD-LLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVN   89 (254)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHH
T ss_pred             ccccchh-hhhhccchHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHH
Confidence            3444555 457899999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             HHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchhhhhhhhHHHHHHHhhhCCCCCcccccCCCCCc
Q psy4004          92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFK  171 (319)
Q Consensus        92 ~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~  171 (319)
                      .||+|+++.|+++++|+++||+|||+++||||+|+||++|++++++.+..+++++||+|||.++++|++++|+||++||+
T Consensus        90 ~aL~~~k~~gv~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~i~~~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~  169 (254)
T 1wku_A           90 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWK  169 (254)
T ss_dssp             HHHHHHHTTTCCCCSCCHHHHHHCCHHHHHHHHHHHHHHHHTTTCEETTEEHHHHHHHHHHHHHTTCTTCCCCSSSGGGT
T ss_pred             HHHHHHHHcCCCccCCCHHHHhccchHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHccCCCCCcCCCCccchh
Confidence            99999999999999999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcccc
Q psy4004         172 DGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQ  250 (319)
Q Consensus       172 DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~~~  250 (319)
                      ||+|||+|||+|+|+++||+.+.+.++.+|+++||++|++++|||++++|||+++++.||++++||||++||++|++.+
T Consensus       170 DG~a~~aLi~~~~P~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~~~  248 (254)
T 1wku_A          170 DGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAE  248 (254)
T ss_dssp             TSHHHHHHHHHHCTTSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHCCCcccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999988778999999999999999999533
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1pxya_ 500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 5e-78
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 4e-72
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 6e-72
d1rt8a_ 505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-67
d1bhda_108 a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI 2e-48
d1sh5a2110 a.40.1.1 (A:128-237) Actin binding domain of plect 5e-48
d1dxxa2127 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie 6e-43
d1bkra_108 a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) 8e-43
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 2e-36
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 2e-32
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 0.001
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 2e-30
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 5e-23
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 2e-20
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 3e-21
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-18
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 3e-18
d1hcia1 125 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sap 6e-04
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  244 bits (624), Expect = 5e-78
 Identities = 48/275 (17%), Positives = 94/275 (34%), Gaps = 38/275 (13%)

Query: 33  TFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLPK----PDR 79
            F    N +L                  + E  ++G+ L  L+ V    T+ +      R
Sbjct: 5   PFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKR 64

Query: 80  GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--- 136
               + +  N    L+   + G  +V+IG +++ +G   + LG+I  +I    + D+   
Sbjct: 65  VLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLK 124

Query: 137 ----------------SVEEMTAKEGLLLWCQRKTA-PYKNVNVQNFHLSFKDGLAFCAL 179
                            +  +  ++ LL W             V NF    KD  A+  L
Sbjct: 125 KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFL 184

Query: 180 IHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYV 239
           ++   PE  D   L   +PL+        AE+ ++  R L  E+++          + +V
Sbjct: 185 LNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFV 240

Query: 240 SCYYHAFQGAQQV-FHSRVQHMTNTAMPDERAIMT 273
           +  +H   G  +   ++  + MT            
Sbjct: 241 AQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCY 275
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1pxya_ 500 Fimbrin (Plastin), actin-crosslinking domain {Thal 100.0
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 100.0
d1rt8a_ 505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 100.0
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 100.0
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 100.0
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.97
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.95
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.83
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.82
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.81
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 99.81
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.76
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.08
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.04
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 98.95
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 98.93
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 98.92
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 98.88
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 98.83
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 98.77
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 98.19
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 98.18
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 98.05
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 97.75
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 97.73
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 94.58
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-50  Score=398.13  Aligned_cols=218  Identities=21%  Similarity=0.340  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHhhhcccC---------CCccchHHHhhhHHHHHHHHHHhcCCCCCCC----CCCCchhhHhhhHHHHHHH
Q psy4004          30 HLLTFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLPKP----DRGKMRFHKIANVNKALDF   96 (319)
Q Consensus        30 q~~~f~~WiN~~L~~~~---------~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~----~~~~~r~~~ieNv~~aL~~   96 (319)
                      |++|||+|||++|.+.+         ..|+||++||+||++||+|+|.++|++++..    .++.+|+|+++|++.||+|
T Consensus         2 qk~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~~   81 (500)
T d1pxya_           2 EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNS   81 (500)
T ss_dssp             THHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHHH
Confidence            89999999999999864         3689999999999999999999999998642    4577899999999999999


Q ss_pred             HHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh-------------------hhhhhhHHHHHHHhhhC-
Q psy4004          97 IASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-------------------EMTAKEGLLLWCQRKTA-  156 (319)
Q Consensus        97 lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~-------------------~~~~k~~LL~W~q~~~~-  156 (319)
                      ++..|+++++|+++||+|||+++||||+|+||++|++..+...                   ..++++.||+|||.++. 
T Consensus        82 ~k~~gi~lvnI~~~dIvdGn~~liLgLlW~ii~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~LL~W~n~~l~~  161 (500)
T d1pxya_          82 AKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKK  161 (500)
T ss_dssp             HHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEeccChhhhhcCCHHHHHHHHHHHHHHHHHhhhccccCcchhccccCCccchhhccCCHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999876432                   34678999999999885 


Q ss_pred             CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHH
Q psy4004         157 PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIM  236 (319)
Q Consensus       157 ~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~  236 (319)
                      .+.+++|+||++||+||++||+|||+|+|++++++.+...+..+|++.||+.|++ +|||++++|+|++   .++++++|
T Consensus       162 ~~~~~~v~nf~~d~~dG~~~~~Ll~~~~P~~~~~~~~~~~~~~~~~~~a~~~a~~-lgip~~l~peDI~---~~~~k~~l  237 (500)
T d1pxya_         162 GGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIV---EGSSTLNL  237 (500)
T ss_dssp             TTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHHH-TTCCCCCCHHHHH---TTCHHHHH
T ss_pred             cCCCceeecCcCCchhHHHHHHHHHHHCCCccChhhcCcCCHHHHHHHHHHHHHH-hCCCccCCHHHhc---CCcHHHHH
Confidence            4558999999999999999999999999999999999999999999999998876 9999999999997   46789999


Q ss_pred             HHHHHHHHHhcccch
Q psy4004         237 TYVSCYYHAFQGAQQ  251 (319)
Q Consensus       237 ~yls~l~~~f~~~~~  251 (319)
                      +|+++||+.|++..+
T Consensus       238 ~~va~lf~~~p~~~~  252 (500)
T d1pxya_         238 AFVAQIFHERNGLNK  252 (500)
T ss_dssp             HHHHHHHHHCCCCC-
T ss_pred             HHHHHHHHhcccccc
Confidence            999999999997665
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure