Psyllid ID: psy4009

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
ISPDKVQFKEDKEEGGVQTWRLLLCLKSSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNADISVSPGDAPSNARNLSSDDANNNSNNKPEGVKQGSELSPGNGSCVVQLLPGPESNL
cccccccEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcEEEccccEEEEccccEEEEEcccccccccccHHHHHcccEEEEEEEEEEEccccEEEEEEEEEEcccEEcccEEcccEEEEccccEEEEEccccccEEEEccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEEEccccccccccccHHHHHHcccccHHHHcccccccccccccccEEEEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccHHHEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccEEEEEcccccccccccEEEEEEcEEEEEEEccccccHcccHHHHHHcccEEEEEEEEEEEcccccccccccccHHHEEcccccEEEEEEEccccEEEEEcccccccEEcccccccHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccHcccccccccccccccccccc
ispdkvqfkedkeeggvQTWRLLLCLKSSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYThgdldkvnlgnatwtpcvtsihsftscflfsvetqhtigygakqvteecPEAIFILCLQSIVGVMIQAFMVGIVFAklsrpkkrtQTLLFSRINclqtsvedkiffiwpttivhkinpmsplytlSAADMLRERFEIVVILEGViestgmttqarssylpneilwgHRFETLVSFKKEtgehevnyglfnntyevhtplcsAQALDQLLAIHgttksnadisvspgdapsnarnlssddannnsnnkpegvkqgselspgngscvvqllpgpesnl
ispdkvqfkedkeeggvqtWRLLLCLksssqtklvyslyrqtrfssrrirrrvvfkhgdcnvvqenvakrrrRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSrinclqtsvedKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGviestgmttqARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNADISVSPGDAPSNARnlssddannnsNNKPEGVKqgselspgngscvvqllpgpesnl
ISPDKVQFKEDKEEGGVQTWRLLLCLKSSSQTKLVYSLYRQTrfssrrirrrvvfKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNADISVSPGDAPsnarnlssddannnsnnKPEGVKQGSELSPGNGSCVVQLLPGPESNL
***************GVQTWRLLLCLKSSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGT**************************************************************
********************************************************HGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQ*************************************************************************
***************GVQTWRLLLCLKSSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNADISVSPGDAPSNARNLSSDDANNN***************PGNGSCVVQLLPGPESNL
***DKVQFKEDKEEGGVQTWRLLLCLKSSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH****************************************************************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ISPDKVQFKEDKEEGGVQTWRLLLCLKSSSQTKLVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRINCLQTSVEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNADISVSPGDAPSNARNLSSDDANNNSNNKPEGVKQGSELSPGNGSCVVQLLPGPESNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q14500433 ATP-sensitive inward rect yes N/A 0.695 0.628 0.449 1e-74
P52187427 ATP-sensitive inward rect yes N/A 0.695 0.637 0.449 1e-74
P52188427 ATP-sensitive inward rect yes N/A 0.695 0.637 0.449 2e-74
Q4TZY1427 ATP-sensitive inward rect yes N/A 0.695 0.637 0.446 3e-74
P63253427 Inward rectifier potassiu no N/A 0.780 0.714 0.434 2e-73
P63252427 Inward rectifier potassiu no N/A 0.780 0.714 0.434 2e-73
P49656427 Inward rectifier potassiu no N/A 0.780 0.714 0.434 3e-73
P35561428 Inward rectifier potassiu no N/A 0.815 0.745 0.417 6e-73
Q64273427 Inward rectifier potassiu no N/A 0.833 0.763 0.421 7e-73
Q9MYY9427 Inward rectifier potassiu no N/A 0.780 0.714 0.431 8e-73
>sp|Q14500|IRK12_HUMAN ATP-sensitive inward rectifier potassium channel 12 OS=Homo sapiens GN=KCNJ12 PE=2 SV=2 Back     alignment and function desciption
 Score =  280 bits (716), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 57/329 (17%)

Query: 45  SSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLM 104
           + RR R R V K+G CN+   N+ ++ +RYL D+FTT VD +WR+ LL+F+L FL SWL+
Sbjct: 38  TRRRCRNRFVKKNGQCNIEFANMDEKSQRYLADMFTTCVDIRWRYMLLIFSLAFLASWLL 97

Query: 105 FAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEEC 164
           F I++W+I   HGDL+         TPCV  +H F + FLFS+ETQ TIGYG + VTEEC
Sbjct: 98  FGIIFWVIAVAHGDLEPAE--GRGRTPCVMQVHGFMAAFLFSIETQTTIGYGLRCVTEEC 155

Query: 165 PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RI 208
           P A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS                R+
Sbjct: 156 PVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALRDGKLCLMWRV 215

Query: 209 NCLQTS--VE----------------------------------DKIFFIWPTTIVHKIN 232
             L+ S  VE                                  D+IF + P TI+H+I+
Sbjct: 216 GNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEID 275

Query: 233 PMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKK 292
             SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGHRFE ++   +
Sbjct: 276 EASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGHRFEPVLF--E 333

Query: 293 ETGEHEVNYGLFNNTYEV-HTPLCSAQAL 320
           E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct: 334 EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362
Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.
Homo sapiens (taxid: 9606)
>sp|P52187|IRK12_MOUSE ATP-sensitive inward rectifier potassium channel 12 OS=Mus musculus GN=Kcnj12 PE=2 SV=2 Back     alignment and function description
>sp|P52188|IRK12_RAT ATP-sensitive inward rectifier potassium channel 12 OS=Rattus norvegicus GN=Kcnj12 PE=1 SV=1 Back     alignment and function description
>sp|Q4TZY1|IRK12_BOVIN ATP-sensitive inward rectifier potassium channel 12 OS=Bos taurus GN=KCNJ12 PE=2 SV=1 Back     alignment and function description
>sp|P63253|IRK2_MACMU Inward rectifier potassium channel 2 OS=Macaca mulatta GN=KCNJ2 PE=2 SV=1 Back     alignment and function description
>sp|P63252|IRK2_HUMAN Inward rectifier potassium channel 2 OS=Homo sapiens GN=KCNJ2 PE=1 SV=1 Back     alignment and function description
>sp|P49656|IRK2_RABIT Inward rectifier potassium channel 2 OS=Oryctolagus cuniculus GN=KCNJ2 PE=2 SV=1 Back     alignment and function description
>sp|P35561|IRK2_MOUSE Inward rectifier potassium channel 2 OS=Mus musculus GN=Kcnj2 PE=1 SV=1 Back     alignment and function description
>sp|Q64273|IRK2_RAT Inward rectifier potassium channel 2 OS=Rattus norvegicus GN=Kcnj2 PE=1 SV=1 Back     alignment and function description
>sp|Q9MYY9|IRK2_CANFA Inward rectifier potassium channel 2 OS=Canis familiaris GN=KCNJ2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
156549109 643 PREDICTED: ATP-sensitive inward rectifie 0.751 0.457 0.675 1e-132
328719111489 PREDICTED: inward rectifier potassium ch 0.918 0.734 0.595 1e-132
328719109 503 PREDICTED: inward rectifier potassium ch 0.895 0.695 0.605 1e-132
328719113431 PREDICTED: inward rectifier potassium ch 0.895 0.812 0.605 1e-132
307207102434 ATP-sensitive inward rectifier potassium 0.751 0.677 0.676 1e-131
383865735 736 PREDICTED: inward rectifier potassium ch 0.808 0.429 0.632 1e-131
322798060 510 hypothetical protein SINV_01399 [Solenop 0.739 0.566 0.686 1e-130
307183920 616 Inward rectifier potassium channel 2 [Ca 0.739 0.469 0.674 1e-130
328782854 739 PREDICTED: hypothetical protein LOC40846 0.808 0.427 0.627 1e-130
340724660 703 PREDICTED: hypothetical protein LOC10064 0.749 0.416 0.659 1e-129
>gi|156549109|ref|XP_001607604.1| PREDICTED: ATP-sensitive inward rectifier potassium channel 12-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/351 (67%), Positives = 264/351 (75%), Gaps = 57/351 (16%)

Query: 34  LVYSLYRQTRFSSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLV 93
           LV + YRQTRFSSRR+R+RVVFKHGDCNVVQ NVAKRRRRYLQDIFTTLVDAQWRWTLLV
Sbjct: 53  LVANRYRQTRFSSRRVRKRVVFKHGDCNVVQGNVAKRRRRYLQDIFTTLVDAQWRWTLLV 112

Query: 94  FALNFLLSWLMFAIVWWLIVYTHGDLD-KVNLG----NATWTPCVTSIHSFTSCFLFSVE 148
           FA+ FLLSWL FA+VWWL+VY HGDL+ K+  G    N ++TPCV  IH FTSCFLFSVE
Sbjct: 113 FAMTFLLSWLGFALVWWLVVYAHGDLEAKIAAGEPGSNVSFTPCVEDIHGFTSCFLFSVE 172

Query: 149 TQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR- 207
           TQHTIGYG+K  TEECPEAIFI+C+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSR 
Sbjct: 173 TQHTIGYGSKHTTEECPEAIFIMCIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRN 232

Query: 208 --------INCLQTSV-------------------------------------------E 216
                     CL   V                                           E
Sbjct: 233 AVICQRDGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTREGELLPFFQTELKVGGDGEE 292

Query: 217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPN 276
           DKIFFIWPTTIVHKIN  SPLY LSA+DMLRERFEI+V+LEGVIESTGMTTQARSSYLP+
Sbjct: 293 DKIFFIWPTTIVHKINEQSPLYHLSASDMLRERFEIIVMLEGVIESTGMTTQARSSYLPS 352

Query: 277 EILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH 327
           EILWGHRFE +++F+KETGE+EVNY LFNNTYEV TPLCSA  LD + A+H
Sbjct: 353 EILWGHRFEHIITFRKETGEYEVNYTLFNNTYEVDTPLCSAAELDHVRAMH 403

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328719111|ref|XP_003246667.1| PREDICTED: inward rectifier potassium channel 2-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328719109|ref|XP_003246666.1| PREDICTED: inward rectifier potassium channel 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328719113|ref|XP_001949404.2| PREDICTED: inward rectifier potassium channel 2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307207102|gb|EFN84911.1| ATP-sensitive inward rectifier potassium channel 12 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383865735|ref|XP_003708328.1| PREDICTED: inward rectifier potassium channel 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322798060|gb|EFZ19899.1| hypothetical protein SINV_01399 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307183920|gb|EFN70510.1| Inward rectifier potassium channel 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328782854|ref|XP_392010.4| PREDICTED: hypothetical protein LOC408462 [Apis mellifera] Back     alignment and taxonomy information
>gi|340724660|ref|XP_003400699.1| PREDICTED: hypothetical protein LOC100647117 isoform 1 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
WB|WBGene00002150463 irk-2 [Caenorhabditis elegans 0.391 0.330 0.490 2e-75
UNIPROTKB|F1NK63421 KCNJ8 "Uncharacterized protein 0.386 0.358 0.535 6e-72
UNIPROTKB|F1PH46390 KCNJ11 "Uncharacterized protei 0.378 0.379 0.559 1.4e-70
UNIPROTKB|F1S9A5388 KCNJ11 "Uncharacterized protei 0.378 0.381 0.552 1.4e-70
WB|WBGene00002149505 irk-1 [Caenorhabditis elegans 0.396 0.306 0.509 1.4e-70
RGD|69247390 Kcnj11 "potassium inwardly rec 0.378 0.379 0.559 2.9e-70
MGI|MGI:107501390 Kcnj11 "potassium inwardly rec 0.378 0.379 0.559 3.7e-70
UNIPROTKB|A2VDS4388 KCNJ11 "Potassium inwardly-rec 0.378 0.381 0.552 6e-70
ZFIN|ZDB-GENE-060308-2381 kcnj11 "potassium inwardly-rec 0.416 0.427 0.488 1.6e-69
UNIPROTKB|F1NI76424 KCNJ4 "Uncharacterized protein 0.424 0.391 0.491 1.6e-69
WB|WBGene00002150 irk-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 431 (156.8 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
 Identities = 77/157 (49%), Positives = 111/157 (70%)

Query:    58 GDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHG 117
             G CN+  +NV K+RR+Y  DIFTT+++ +WRW LL F+L+F++SW  FA V++LI   HG
Sbjct:    39 GLCNISLKNVPKQRRKYFSDIFTTVIEMKWRWCLLYFSLSFMISWSFFATVYFLIAKQHG 98

Query:   118 DLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIV 177
             D++++   NATWTPC+ ++H+  + FLFS  TQ TIGYG +  T+ CP  I  +C Q + 
Sbjct:    99 DIEQI--ANATWTPCIVNVHNELNAFLFSFTTQTTIGYGFRYPTDACPLTIVTMCFQFMW 156

Query:   178 GVMIQAFMVGIVFAKLSRPKKRTQTLLFSR--INCLQ 212
             GVM Q  M GI+F+KL+RP KR  TL+FS+  + CL+
Sbjct:   157 GVMTQTLMAGIIFSKLARPIKRAATLIFSKNAVICLR 193
GO:0005242 "inward rectifier potassium channel activity" evidence=IEA
GO:0006813 "potassium ion transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
UNIPROTKB|F1NK63 KCNJ8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PH46 KCNJ11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9A5 KCNJ11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00002149 irk-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|69247 Kcnj11 "potassium inwardly rectifying channel, subfamily J, member 11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107501 Kcnj11 "potassium inwardly rectifying channel, subfamily J, member 11" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDS4 KCNJ11 "Potassium inwardly-rectifying channel, subfamily J, member 11" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060308-2 kcnj11 "potassium inwardly-rectifying channel, subfamily J, member 11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NI76 KCNJ4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P52188IRK12_RATNo assigned EC number0.44980.69560.6370yesN/A
P52187IRK12_MOUSENo assigned EC number0.44980.69560.6370yesN/A
O18839IRK2_PIGNo assigned EC number0.43160.78000.7142yesN/A
B7U540IRK18_HUMANNo assigned EC number0.43760.69560.6281yesN/A
Q4TZY1IRK12_BOVINNo assigned EC number0.44680.69560.6370yesN/A
Q14500IRK12_HUMANNo assigned EC number0.44980.69560.6281yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 1e-139
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information 
 Score =  398 bits (1026), Expect = e-139
 Identities = 163/325 (50%), Positives = 204/325 (62%), Gaps = 56/325 (17%)

Query: 54  VFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIV 113
           V K G CNV  +NV   R RYLQDIFTTLVD +WR+ LL+F+L FLLSWL F  +WWLI 
Sbjct: 1   VSKDGRCNVYFKNVRGERGRYLQDIFTTLVDLKWRYMLLIFSLAFLLSWLFFGTIWWLIA 60

Query: 114 YTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCL 173
           + HGDL+     +A  TPCV ++HSFTS FLFS+ETQ TIGYG + +TEECP AIF+L L
Sbjct: 61  FAHGDLEP--APDANHTPCVMNVHSFTSAFLFSIETQTTIGYGFRCITEECPLAIFLLIL 118

Query: 174 QSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS--------------------------- 206
           QSI+G +I AFM+G +FAK++RPKKR +TL+FS                           
Sbjct: 119 QSILGCIINAFMIGCIFAKMARPKKRAETLIFSHHAVIALRDGKLCLMFRVGDLRKSHLV 178

Query: 207 ----RINCLQTSV---------------------EDKIFFIWPTTIVHKINPMSPLYTLS 241
               R   L++ V                      D+IF + P TI H I+  SPLY LS
Sbjct: 179 EAHVRAQLLKSRVTPEGEFIPLHQIDIKVGFDTGSDRIFLVSPLTICHVIDERSPLYDLS 238

Query: 242 AADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNY 301
           A D+    FEIVVILEG +ESTGMT QAR+SYLP EILWGHRFE +VS +   G+++V+Y
Sbjct: 239 AQDLKSADFEIVVILEGTVESTGMTCQARTSYLPEEILWGHRFEPVVSLEN--GKYKVDY 296

Query: 302 GLFNNTYEVHTPLCSAQALDQLLAI 326
             F+ TYEV TP CSA+ LD+  +I
Sbjct: 297 SQFHKTYEVPTPDCSARELDEEKSI 321

Length = 336

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
KOG3827|consensus400 100.0
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 100.0
KOG3713|consensus477 99.28
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.15
KOG1545|consensus507 99.06
KOG4390|consensus632 98.68
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.61
PRK10537393 voltage-gated potassium channel; Provisional 98.59
KOG0498|consensus 727 98.38
KOG1419|consensus 654 98.34
KOG1418|consensus433 97.64
KOG3684|consensus489 97.15
KOG1420|consensus 1103 96.96
KOG0501|consensus 971 96.84
KOG4404|consensus350 96.67
PF00520200 Ion_trans: Ion transport protein calcium channel s 96.66
KOG0500|consensus 536 96.55
KOG4404|consensus350 96.48
KOG1418|consensus433 96.35
KOG0499|consensus 815 94.23
KOG3193|consensus 1087 94.14
PF07077180 DUF1345: Protein of unknown function (DUF1345); In 93.66
>KOG3827|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-98  Score=743.63  Aligned_cols=275  Identities=61%  Similarity=1.099  Sum_probs=265.3

Q ss_pred             cccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCC
Q psy4009          48 RIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGNA  127 (391)
Q Consensus        48 ~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~~  127 (391)
                      |.|+|+|.|||+|||.++|+++++.||++|+|||++|++|||.+++|+++|+++|++||++||+||+.||||+..+ ++.
T Consensus        23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~-~~~  101 (400)
T KOG3827|consen   23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDP-PGE  101 (400)
T ss_pred             hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCC-CCc
Confidence            6799999999999999999988899999999999999999999999999999999999999999999999998654 467


Q ss_pred             CCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeecc
Q psy4009         128 TWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR  207 (391)
Q Consensus       128 ~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~FS~  207 (391)
                      +|+||+.++++|++||+||+|||||||||.|+++++||.|++++++|+|+|++++|||+|++|||++||||||+||+||+
T Consensus       102 ~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeTl~FS~  181 (400)
T KOG3827|consen  102 NHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAETLIFSD  181 (400)
T ss_pred             CCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhheeeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ---------ceeEee-------------------------------------------ccCcceeeccCeeEEeecCCCC
Q psy4009         208 ---------INCLQT-------------------------------------------SVEDKIFFIWPTTIVHKINPMS  235 (391)
Q Consensus       208 ---------~lcLmf-------------------------------------------~~~~~~fl~~p~tv~H~IDe~S  235 (391)
                               |+||||                                           .|.|++||+||+||+|+|||+|
T Consensus       182 ~AVI~~RDGkLCLmfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~S  261 (400)
T KOG3827|consen  182 HAVIALRDGKLCLMFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDETS  261 (400)
T ss_pred             ceEEEeeCCceEEEEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCCC
Confidence                     899999                                           4457999999999999999999


Q ss_pred             CCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecCCCC
Q psy4009         236 PLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC  315 (391)
Q Consensus       236 PLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~P~c  315 (391)
                      |||++++++|.++||||||+|+|++|+||+|+|||+||+|+||+|||||+|+++++ ++|+|.|||++||+|++|+||.|
T Consensus       262 PLy~l~~~~l~~~~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWGhRF~pvv~~~-~~g~Y~VDy~~F~~T~~V~tP~c  340 (400)
T KOG3827|consen  262 PLYDLSRQDLAKADFEIVVILEGTVEATGMTTQARTSYLPSEILWGHRFVPVVTLE-KNGKYEVDYSNFHKTYEVPTPLC  340 (400)
T ss_pred             chhhhChhhhhhcceEEEEEEEeEEecccceeecccccchHHhhhccccceeeEec-cCCcEEEEhHHcCceeeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999975 79999999999999999999999


Q ss_pred             CHHhHHHHh
Q psy4009         316 SAQALDQLL  324 (391)
Q Consensus       316 sa~~l~~~~  324 (391)
                      ||++++|.+
T Consensus       341 sa~~l~E~~  349 (400)
T KOG3827|consen  341 SAKELDELK  349 (400)
T ss_pred             Chhhhhhhh
Confidence            999999833

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
3jyc_A343 Crystal Structure Of The Eukaryotic Strong Inward-R 2e-72
3sph_A343 Inward Rectifier Potassium Channel Kir2.2 I223l Mut 2e-72
3spg_A343 Inward Rectifier Potassium Channel Kir2.2 R186a Mut 1e-71
3syc_A340 Crystal Structure Of The G Protein-Gated Inward Rec 1e-69
3sya_A340 Crystal Structure Of The G Protein-Gated Inward Rec 1e-69
3syp_A340 Crystal Structure Of The G Protein-Gated Inward Rec 9e-69
2qks_A321 Crystal Structure Of A Kir3.1-Prokaryotic Kir Chann 4e-42
2xky_I309 Single Particle Analysis Of Kir2.1nc_4 In Negative 3e-27
1u4f_A270 Crystal Structure Of Cytoplasmic Domains Of Irk1 (K 4e-27
2gix_A208 Cytoplasmic Domain Structure Of Kir2.1 Containing A 1e-26
3agw_A208 Crystal Structure Of The Cytoplasmic Domain Of G-Pr 7e-26
2e4f_A208 Crystal Structure Of The Cytoplasmic Domain Of G-Pr 7e-26
3auw_B182 Cytoplasmic Domain Of Inward Rectifier Potassium Ch 8e-26
3k6n_A207 Crystal Structure Of The S225e Mutant Kir3.1 Cytopl 1e-23
1u4e_A212 Crystal Structure Of Cytoplasmic Domains Of Girk1 C 1e-23
1n9p_A207 Crystal Structure Of The Cytoplasmic Domain Of G-pr 7e-22
2wll_A333 Potassium Channel From Burkholderia Pseudomallei Le 1e-12
1p7b_A333 Crystal Structure Of An Inward Rectifier Potassium 1e-12
2wln_A301 Potassium Channel From Magnetospirillum Magnetotact 1e-08
2wli_A301 Potassium Channel From Magnetospirillum Magnetotact 2e-08
2x6a_A301 Potassium Channel From Magnetospirillum Magnetotact 2e-08
1xl4_A301 Intermediate Gating Structure 1 Of The Inwardly Rec 2e-08
2x6b_A301 Potassium Channel From Magnetospirillum Magnetotact 2e-08
3zrs_A301 X-Ray Crystal Structure Of A Kirbac Potassium Chann 4e-08
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom Resolution Length = 343 Back     alignment and structure 
Iteration: 1

 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/318 (45%), Positives = 200/318 (62%), Gaps = 56/318 (17%)
Query: 56  KHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYT 115
           K+G CNV   N+  + +RY+ D+FTT VD +WR+ LL+F+L FL+SWL+F +++WLI   
Sbjct: 13  KNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLLFGLIFWLIALI 72
Query: 116 HGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQS 175
           HGDL+    G+ T+ PCV  ++ F + FLFS+ETQ TIGYG + VTEECP A+F++ +QS
Sbjct: 73  HGDLENPG-GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQS 131
Query: 176 IVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS----------------RINCLQTS--VE- 216
           IVG +I +FM+G + AK++RPKKR QTLLFS                R+  L+ S  VE 
Sbjct: 132 IVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNLRKSHIVEA 191
Query: 217 ---------------------------------DKIFFIWPTTIVHKINPMSPLYTLSAA 243
                                            D+IF + P TI+H+IN  SPL+ +S  
Sbjct: 192 HVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDSPLFGISRQ 251
Query: 244 DMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL 303
           D+  + FEIVVILEG++E+T MTTQARSSYL +EILWGHRFE ++   +E  +++V+Y  
Sbjct: 252 DLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSH 309
Query: 304 FNNTYEV-HTPLCSAQAL 320
           F+ TYEV  TP CSA+ L
Sbjct: 310 FHKTYEVPSTPRCSAKDL 327
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) D228n Mutant Length = 340 Back     alignment and structure
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) In Complex With Sodium And Pip2 Length = 340 Back     alignment and structure
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) R201a Mutant Length = 340 Back     alignment and structure
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel Chimera Length = 321 Back     alignment and structure
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain Length = 309 Back     alignment and structure
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1) Channel Length = 270 Back     alignment and structure
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's Mutation R218q And Rescue Mutation T309k Length = 208 Back     alignment and structure
>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 In The Absence Of Na+ Length = 208 Back     alignment and structure
>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 Length = 208 Back     alignment and structure
>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel Kir3.2 In Complex With Cadmium Length = 182 Back     alignment and structure
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic Pore Domain Length = 207 Back     alignment and structure
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel Length = 212 Back     alignment and structure
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein Activated Inward Rectifier Potassium Channel 1 Length = 207 Back     alignment and structure
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei Length = 333 Back     alignment and structure
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel Length = 333 Back     alignment and structure
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying K+ Channel Kirbac3.1 Length = 301 Back     alignment and structure
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel Highlights A Mechanism Of Channel Opening At The Bundle-Crossing Gate Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 1e-102
3sya_A340 G protein-activated inward rectifier potassium CH; 1e-102
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 3e-89
1p7b_A333 Integral membrane channel and cytosolic domains; t 5e-84
1xl4_A301 Inward rectifier potassium channel; integral membr 3e-79
2xky_I309 Inward rectifier potassium channel 2; ION channel, 1e-48
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 3e-43
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 8e-42
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 3e-41
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 3e-41
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
 Score =  306 bits (784), Expect = e-102
 Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 56/342 (16%)

Query: 45  SSRRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLM 104
           + R+ R R V K+G CNV   N+  + +RY+ D+FTT VD +WR+ LL+F+L FL+SWL+
Sbjct: 2   ARRKCRNRFVKKNGQCNVEFTNMDDKPQRYIADMFTTCVDIRWRYMLLLFSLAFLVSWLL 61

Query: 105 FAIVWWLIVYTHGDLDKVNLGNATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEEC 164
           F +++WLI   HGDL+    G+ T+ PCV  ++ F + FLFS+ETQ TIGYG + VTEEC
Sbjct: 62  FGLIFWLIALIHGDLENPG-GDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120

Query: 165 PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSR---------INCL---- 211
           P A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS            CL    
Sbjct: 121 PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180

Query: 212 --------------------------------QTSVE-------DKIFFIWPTTIVHKIN 232
                                           Q  ++       D+IF + P TI+H+IN
Sbjct: 181 GNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEIN 240

Query: 233 PMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKK 292
             SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWGHRFE ++  +K
Sbjct: 241 EDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLFEEK 300

Query: 293 ETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAIHGTTKSN 333
              +++V+Y  F+ TYEV  TP CSA+ L +   +   +   
Sbjct: 301 --NQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSNSLEV 340
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Length = 309 Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Length = 208 Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Length = 207 Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Length = 208 Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Length = 270 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3sya_A340 G protein-activated inward rectifier potassium CH; 100.0
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 100.0
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 100.0
1xl4_A301 Inward rectifier potassium channel; integral membr 100.0
1p7b_A333 Integral membrane channel and cytosolic domains; t 100.0
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 100.0
2xky_I309 Inward rectifier potassium channel 2; ION channel, 100.0
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 100.0
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 100.0
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 100.0
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.51
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.45
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.41
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.37
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.32
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.25
2q67_A114 Potassium channel protein; inverted teepee, helix 99.16
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.15
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.15
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.09
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.09
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.06
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.87
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.85
1lnq_A336 MTHK channels, potassium channel related protein; 98.55
3um7_A309 Potassium channel subfamily K member 4; potassium 98.48
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.46
3um7_A309 Potassium channel subfamily K member 4; potassium 98.45
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.37
3rvy_A285 ION transport protein; tetrameric ION channel, vol 98.02
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 93.04
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-86  Score=658.55  Aligned_cols=274  Identities=50%  Similarity=0.955  Sum_probs=257.6

Q ss_pred             ccccCceEeeCCceeEEecCchhhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy4009          47 RRIRRRVVFKHGDCNVVQENVAKRRRRYLQDIFTTLVDAQWRWTLLVFALNFLLSWLMFAIVWWLIVYTHGDLDKVNLGN  126 (391)
Q Consensus        47 ~~~~~Rlv~K~G~~NV~~~~~~~~~~ryl~DlfttLv~~~Wr~~llif~~~yl~~~llFA~ly~li~~~~gdl~~~~~~~  126 (391)
                      |++|+|+|+|||+|||+++|+ +++.+|++|+||++++++|++++++|+++|+++|++||++||++++.|||+.+.+  +
T Consensus         3 ~~~~~R~v~k~G~~nv~~~~~-~~~~~~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~--~   79 (340)
T 3sya_A            3 KRKIQRYVRKDGKCNVHHGNV-RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIE--D   79 (340)
T ss_dssp             ---CCCSBCTTSCBCCCCCCC-CCTHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSS--C
T ss_pred             CcccceEEecCCcEEEEEcCc-ccchHHHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--c
Confidence            667889999999999999988 5688999999999999999999999999999999999999999999999986432  4


Q ss_pred             CCCCCcccCCCchhhhhheeeeccccccCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccceeeec
Q psy4009         127 ATWTPCVTSIHSFTSCFLFSVETQHTIGYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFS  206 (391)
Q Consensus       127 ~~~~pCv~~~~sF~~AF~FSveT~TTIGYGd~~Pt~~Cp~g~~l~~iq~l~Glll~A~~~GivfaK~SRP~~Ra~TI~FS  206 (391)
                      .+|+||+.++.+|.+|||||++|+|||||||++|+++||.|++++++|+++|++++|+++|++|+|++||++|++||+||
T Consensus        80 ~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra~ti~FS  159 (340)
T 3sya_A           80 PSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFS  159 (340)
T ss_dssp             SSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEC
T ss_pred             ccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCceEEec
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c---------ceeEee-------------------------------------------ccCcceeeccCeeEEeecCCC
Q psy4009         207 R---------INCLQT-------------------------------------------SVEDKIFFIWPTTIVHKINPM  234 (391)
Q Consensus       207 ~---------~lcLmf-------------------------------------------~~~~~~fl~~p~tv~H~IDe~  234 (391)
                      +         ++||||                                           .+.+++||.+||||+|+|||+
T Consensus       160 ~~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~Ide~  239 (340)
T 3sya_A          160 THAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQ  239 (340)
T ss_dssp             SCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEECCTT
T ss_pred             ceEEEeccCCeEEEEEEEecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEECCCC
Confidence            9         799999                                           123466899999999999999


Q ss_pred             CCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCeEEEecCCCCceeeecCCC
Q psy4009         235 SPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPL  314 (391)
Q Consensus       235 SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~~~VD~~~F~~t~~v~~P~  314 (391)
                      ||||++++++|+++++||+|+++|+||+|||++|||+||.++||+|||||+||++.  ++|+|.|||++||+|+|++||.
T Consensus       240 SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~~--~~g~~~vD~s~F~~~~~v~~p~  317 (340)
T 3sya_A          240 SPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNSFHETYETSTPS  317 (340)
T ss_dssp             STTTTCCTTTGGGCCCEEEEEEEEEESSSCCEEEEEEEEEGGGEEETEEECCCEEE--ETTEEEECGGGSSCEEECCCCC
T ss_pred             CCccccChhHHhhCCeEEEEEEEEEeccccceEEEEEEEcHHHEecCCEeceeEEc--CCCeEEEEhHHcCcceEcCCCC
Confidence            99999999999999999999999999999999999999999999999999999983  5899999999999999999999


Q ss_pred             CCHHhHHHHhh
Q psy4009         315 CSAQALDQLLA  325 (391)
Q Consensus       315 csa~~l~~~~~  325 (391)
                      |||+|++|.++
T Consensus       318 csa~~~~~~~~  328 (340)
T 3sya_A          318 LSAKELAELAN  328 (340)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHh
Confidence            99999998874
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d1n9pa_202 b.1.18.16 (A:) G protein-gated inward rectifier Gi 9e-42
d1p7ba1158 b.1.18.16 (A:152-309) Inward rectifier potassium c 3e-37
d1xl4a1161 b.1.18.16 (A:139-299) Inward rectifier potassium c 7e-37
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 2e-24
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 2e-23
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 202 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  143 bits (363), Expect = 9e-42
 Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 56/191 (29%)

Query: 188 IVFAKLSRPKKRTQTLLFSR---------INCLQTSV----------------------- 215
           +    L    +R +TL+FS             L   V                       
Sbjct: 13  VQHGNLG--SERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQT 70

Query: 216 --------------------EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVI 255
                                D++F + P TI H I+  SP Y LS   M  E+FE+VVI
Sbjct: 71  PEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVI 130

Query: 256 LEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 315
           LEG++E+TGMT QAR+SY  +E+LWGHRF  ++S ++  G  +V+Y  F+ T+EV TP  
Sbjct: 131 LEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHATFEVPTPPY 188

Query: 316 SAQALDQLLAI 326
           S +  +++L +
Sbjct: 189 SVKEQEEMLLM 199
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 158 Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 161 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d1n9pa_202 G protein-gated inward rectifier Girk1 {Mouse (Mus 100.0
d1p7ba1158 Inward rectifier potassium channel Kirbac1.1 {Burk 100.0
d1xl4a1161 Inward rectifier potassium channel kirbac3.1 {Magn 100.0
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.91
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.9
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.48
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.56
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 98.13
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-42  Score=319.59  Aligned_cols=135  Identities=44%  Similarity=0.743  Sum_probs=119.5

Q ss_pred             HHHHHhCcccccceeeecc---------ceeEee--------------------------c-----------------cC
Q psy4009         189 VFAKLSRPKKRTQTLLFSR---------INCLQT--------------------------S-----------------VE  216 (391)
Q Consensus       189 vfaK~SRP~~Ra~TI~FS~---------~lcLmf--------------------------~-----------------~~  216 (391)
                      .|++|+  ++||+||+||+         ++||||                          +                 ++
T Consensus        14 ~~~r~~--~kRa~tI~FS~~AVI~~~dG~~~LmfRvan~R~~~liea~vr~~L~~~~~t~EGe~~~~~~~~l~l~~~~~~   91 (202)
T d1n9pa_          14 QHGNLG--SERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGA   91 (202)
T ss_dssp             EC-------CCSCCSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTTTTT
T ss_pred             EEeecC--CCCcceEEEcccEEEEEECCEEEEEEEEecCcCCeEEeEEEEEEEEEeeecCCCceEEEEEEEeeccccCCC
Confidence            456666  46777999999         799999                          1                 12


Q ss_pred             cceeeccCeeEEeecCCCCCCCCCCHhhhccCCEEEEEEEEEeeccccceEEEEEeecCCceecCCeeccceeeecCCCe
Q psy4009         217 DKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGE  296 (391)
Q Consensus       217 ~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~EivV~l~G~destg~tvqaR~SY~~~EI~wg~rF~~~i~~~~~~g~  296 (391)
                      +++||.+||||+|+|||+||||++++++|++.++||+|+|+|+||+|||++||||||.++||+|||||+||++.  ++|+
T Consensus        92 ~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~ElvV~l~G~de~t~~~v~aR~sY~~~eI~wg~rF~div~~--~~g~  169 (202)
T d1n9pa_          92 DQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISL--EEGF  169 (202)
T ss_dssp             TEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEE--SSSC
T ss_pred             CccEEcccEEEEEECCCCCCCcccchhhhhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEeeCCEEeeeEEe--cCCE
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999984  5799


Q ss_pred             EEEecCCCCceeeecCCCCCHHhHHHHhhhc
Q psy4009         297 HEVNYGLFNNTYEVHTPLCSAQALDQLLAIH  327 (391)
Q Consensus       297 ~~VD~~~F~~t~~v~~P~csa~~l~~~~~~~  327 (391)
                      |.|||++||+|+|+++|.|||+|++|...++
T Consensus       170 ~~VD~s~F~~t~pv~~P~~sa~~~~~~~~~~  200 (202)
T d1n9pa_         170 FKVDYSQFHATFEVPTPPYSVKEQEEMLLMS  200 (202)
T ss_dssp             EEECGGGSSCEEECCCCCSCHHHHHHHHHHH
T ss_pred             EEEEHHHCCcceECCCCCcCHHHHHHHhhcc
Confidence            9999999999999999999999999987664
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure