Psyllid ID: psy407

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGGVANDPQYSGT
Secondary Structure (PSIPRED)
cccEEEEEEEcccccccccEEEEEEEEccEEEEEEccccccccccEEcEEEEccccEEEEcccccccccccEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccHHHHHHHHHEEHHcccEEEEEEccccccccHHHHcccEccccEEEEEcccccccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDHVCFLIILNDNMASTLCHNVYLLLATHVMvfspeisglgfeeEKLLgsillpsykispcssddkvFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILqnsstgwedrrlnnedndsgfhgtygrssnrakpnnaeqqylggvandpqysgt
Flexible Loop (DISEMBL)
MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGtygrssnrakpnnaeqqylggvandpqysgt
Low Complexity Region (SEG)
MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGGVANDPQYSGT
Disordered region (IsUnstruct)
**HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ*****************************************************
Disordered Region (DISOPRED)
*DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEIS******EKLLGSILLPSYKISPC****KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS***********************************************************
Disordered Region (DISEMBL)
MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGGVANDPQYSGT
Disordered Region (DISPRO)
**HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNS***************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGGVANDPQYSGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
B6RSP1	1197	Pleckstrin homology domai	yes	N/A	0.418	0.055	0.522	8e-16
Q9HAU0	1116	Pleckstrin homology domai	yes	N/A	0.462	0.066	0.472	9e-14
Q3UIL6	1118	Pleckstrin homology domai	no	N/A	0.418	0.059	0.448	3e-12
Q6IQ23	1121	Pleckstrin homology domai	no	N/A	0.418	0.059	0.436	1e-11
Q9H4M7	779	Pleckstrin homology domai	no	N/A	0.431	0.088	0.478	6e-11
Q8VC98	588	Pleckstrin homology domai	no	N/A	0.431	0.117	0.463	7e-11
P60669	779	Pleckstrin homology domai	no	N/A	0.431	0.088	0.463	9e-11
Q9Y2H5	1048	Pleckstrin homology domai	no	N/A	0.406	0.062	0.415	2e-09
Q7TQG1	1173	Pleckstrin homology domai	no	N/A	0.406	0.055	0.4	6e-09
Q80YA9	1032	Connector enhancer of kin	no	N/A	0.456	0.070	0.304	6e-05

>sp|B6RSP1|PKHA7_DANRE Pleckstrin homology domain-containing family A member 7 OS=Danio rerio GN=plekha7 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           EE +LGSI LPSY I+P   +D + RK++FKAEH  MRTYYF+ADT+E M  W+ A++ A
Sbjct: 196 EESVLGSIPLPSYTIAPVGPEDHISRKYAFKAEHTGMRTYYFSADTQEDMNGWVRAMNQA 255

Query: 104 SILQNSS 110
           +++Q  +
Sbjct: 256 ALMQTHT 262

Required for zonula adherens biogenesis and maintenance.
Danio rerio (taxid: 7955)

>sp|Q9HAU0|PKHA5_HUMAN Pleckstrin homology domain-containing family A member 5 OS=Homo sapiens GN=PLEKHA5 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct: 206 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 265

Query: 103 ASILQNSSTGWEDR 116
           A+++Q       D+
Sbjct: 266 AALVQTEPVKRVDK 279

Homo sapiens (taxid: 9606)

>sp|Q3UIL6|PKHA7_MOUSE Pleckstrin homology domain-containing family A member 7 OS=Mus musculus GN=Plekha7 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 20/87 (22%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKA-------------------EHANMRTYY 84
           EE +LGSI LPSY ISP + +D++ RK+SFKA                   EH+ MRTYY
Sbjct: 201 EEAVLGSIPLPSYVISPVAPEDRISRKYSFKAVHTGMRALIYSTTTAGSQMEHSGMRTYY 260

Query: 85  FAADTRESMIQWMNALSLAS-ILQNSS 110
           F+ADT E M  W+ A++ A+ +L  SS
Sbjct: 261 FSADTLEDMNAWVRAMNQAAQVLSRSS 287

Required for zonula adherens biogenesis and maintenance. Acts via its interaction with KIAA1543/Nezha, which anchors microtubules at their minus-ends to zonula adherens, leading to recruit KIFC3 kinesin to junctional site.

Mus musculus (taxid: 10090)

>sp|Q6IQ23|PKHA7_HUMAN Pleckstrin homology domain-containing family A member 7 OS=Homo sapiens GN=PLEKHA7 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 20/87 (22%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------------------AEHANMRTYY 84
           EE +LGSI LPSY ISP + +D++ RK+SFK                   AE + MRTYY
Sbjct: 202 EEAVLGSIPLPSYVISPVAPEDRISRKYSFKAVHTGMRALIYNSSTAGSQAEQSGMRTYY 261

Query: 85  FAADTRESMIQWMNALSLAS-ILQNSS 110
           F+ADT+E M  W+ A++ A+ +L  SS
Sbjct: 262 FSADTQEDMNAWVRAMNQAAQVLSRSS 288

Required for zonula adherens biogenesis and maintenance. Acts via its interaction with KIAA1543/Nezha, which anchors microtubules at their minus-ends to zonula adherens, leading to recruit KIFC3 kinesin to junctional site.

Homo sapiens (taxid: 9606)

>sp|Q9H4M7|PKHA4_HUMAN Pleckstrin homology domain-containing family A member 4 OS=Homo sapiens GN=PLEKHA4 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 40/69 (57%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  A
Sbjct: 92  EESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 151

Query: 104 SILQNSSTG 112
           S  +    G
Sbjct: 152 SRAEGDDYG 160

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.

Homo sapiens (taxid: 9606)

>sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing family A member 4 OS=Mus musculus GN=Plekha4 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           EE +LGS+LLPSY + P        R+F+F AEH  MRTY  AADT E +  W+ AL  A
Sbjct: 92  EESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 151

Query: 104 SILQNSSTG 112
           S  +    G
Sbjct: 152 SRAEGEDCG 160

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.

Mus musculus (taxid: 10090)

>sp|P60669|PKHA4_RAT Pleckstrin homology domain-containing family A member 4 OS=Rattus norvegicus GN=Plekha4 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           EE +LGS+LLPSY + P        R+F+F AEH  MRTY  AADT E +  W+ AL  A
Sbjct: 92  EESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGKA 151

Query: 104 SILQNSSTG 112
           S  +    G
Sbjct: 152 SRAEGEDCG 160

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2H5|PKHA6_HUMAN Pleckstrin homology domain-containing family A member 6 OS=Homo sapiens GN=PLEKHA6 PE=1 SV=4

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 96  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 155

Query: 103 ASILQ 107
           A+ +Q
Sbjct: 156 AARVQ 160

Homo sapiens (taxid: 9606)

>sp|Q7TQG1|PKHA6_MOUSE Pleckstrin homology domain-containing family A member 6 OS=Mus musculus GN=Plekha6 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 44/65 (67%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           ++E +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 96  KQESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 155

Query: 103 ASILQ 107
           A+ +Q
Sbjct: 156 AARVQ 160

Mus musculus (taxid: 10090)

>sp|Q80YA9|CNKR2_MOUSE Connector enhancer of kinase suppressor of ras 2 OS=Mus musculus GN=Cnksr2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 9/82 (10%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           E+EK  G I LP +KI   S   +  +K++FKA H  ++++YFAA+  + M +W+N +++
Sbjct: 610 EDEKAEGFISLPEFKIDRAS---ECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINM 666

Query: 103 ASILQNSSTGWEDRRLNNEDND 124
                  + G+ +R    ++ D
Sbjct: 667 L------TAGYAERERIKQEQD 682

May function as an adapter protein or regulator of Ras signaling pathways.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
328719136	1931	PREDICTED: hypothetical protein LOC10015	0.625	0.051	0.642	3e-27
328719138	1955	PREDICTED: hypothetical protein LOC10015	0.625	0.051	0.642	3e-27
328719132	1925	PREDICTED: hypothetical protein LOC10015	0.625	0.051	0.642	3e-27
328719140	1876	PREDICTED: hypothetical protein LOC10015	0.625	0.053	0.642	3e-27
328719134	1950	PREDICTED: hypothetical protein LOC10015	0.625	0.051	0.642	3e-27
242011727	752	phosphoinositol 3-phosphate-binding prot	0.418	0.089	0.805	1e-25
350417736	1986	PREDICTED: hypothetical protein LOC10074	0.45	0.036	0.722	9e-25
340729380	2148	PREDICTED: hypothetical protein LOC10064	0.45	0.033	0.722	9e-25
328791467	1021	PREDICTED: hypothetical protein LOC10057	0.581	0.091	0.528	1e-24
345492005	2706	PREDICTED: hypothetical protein LOC10067	0.581	0.034	0.484	1e-24

>gi|328719136|ref|XP_003246673.1| PREDICTED: hypothetical protein LOC100159827 isoform 4 [Acyrthosiphon pisum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 9/109 (8%)

Query: 43  EEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 102 LASILQNSSTGWEDR------RLNN--EDNDSGFHGTYGRSSNRAKPNN 142
           LASILQ +   + +R      + NN  +D DSGF  +   S+ R+  NN
Sbjct: 134 LASILQQNYGRYNERNNIKRSQYNNKLDDMDSGFLSSSFYSTPRSYYNN 182

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719138|ref|XP_001942884.2| PREDICTED: hypothetical protein LOC100159827 isoform 1 [Acyrthosiphon pisum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 9/109 (8%)

Query: 43  EEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 102 LASILQNSSTGWEDR------RLNN--EDNDSGFHGTYGRSSNRAKPNN 142
           LASILQ +   + +R      + NN  +D DSGF  +   S+ R+  NN
Sbjct: 134 LASILQQNYGRYNERNNIKRSQYNNKLDDMDSGFLSSSFYSTPRSYYNN 182

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719132|ref|XP_003246671.1| PREDICTED: hypothetical protein LOC100159827 isoform 2 [Acyrthosiphon pisum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 9/109 (8%)

Query: 43  EEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 102 LASILQNSSTGWEDR------RLNN--EDNDSGFHGTYGRSSNRAKPNN 142
           LASILQ +   + +R      + NN  +D DSGF  +   S+ R+  NN
Sbjct: 134 LASILQQNYGRYNERNNIKRSQYNNKLDDMDSGFLSSSFYSTPRSYYNN 182

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719140|ref|XP_003246674.1| PREDICTED: hypothetical protein LOC100159827 isoform 5 [Acyrthosiphon pisum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 9/109 (8%)

Query: 43  EEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 102 LASILQNSSTGWEDR------RLNN--EDNDSGFHGTYGRSSNRAKPNN 142
           LASILQ +   + +R      + NN  +D DSGF  +   S+ R+  NN
Sbjct: 134 LASILQQNYGRYNERNNIKRSQYNNKLDDMDSGFLSSSFYSTPRSYYNN 182

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719134|ref|XP_003246672.1| PREDICTED: hypothetical protein LOC100159827 isoform 3 [Acyrthosiphon pisum]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 9/109 (8%)

Query: 43  EEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 99  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 158

Query: 102 LASILQNSSTGWEDR------RLNN--EDNDSGFHGTYGRSSNRAKPNN 142
           LASILQ +   + +R      + NN  +D DSGF  +   S+ R+  NN
Sbjct: 159 LASILQQNYGRYNERNNIKRSQYNNKLDDMDSGFLSSSFYSTPRSYYNN 207

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011727|ref|XP_002426598.1| phosphoinositol 3-phosphate-binding protein, putative [Pediculus humanus corporis] gi|212510747|gb|EEB13860.1| phosphoinositol 3-phosphate-binding protein, putative [Pediculus humanus corporis]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 63/67 (94%)

Query: 41  GFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
           G EEEKLLGSILLPSYK+SPC+++DKV+RK++FKAEHANMRTYYFAA+TRE M +W NAL
Sbjct: 109 GPEEEKLLGSILLPSYKVSPCTAEDKVYRKYAFKAEHANMRTYYFAAETRELMTEWTNAL 168

Query: 101 SLASILQ 107
           SLASILQ
Sbjct: 169 SLASILQ 175

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417736|ref|XP_003491569.1| PREDICTED: hypothetical protein LOC100742314 [Bombus impatiens]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 64/72 (88%)

Query: 41  GFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
           G EEEKLLGSILLPSY+++ C  +DKV RKF+FKAEHANMRTY+FAAD+RESM QW+NAL
Sbjct: 183 GPEEEKLLGSILLPSYRVTVCKPEDKVNRKFAFKAEHANMRTYHFAADSRESMNQWVNAL 242

Query: 101 SLASILQNSSTG 112
           +LA++LQ+ S G
Sbjct: 243 TLATLLQDPSPG 254

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729380|ref|XP_003402982.1| PREDICTED: hypothetical protein LOC100645228 [Bombus terrestris]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 64/72 (88%)

Query: 41  GFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
           G EEEKLLGSILLPSY+++ C  +DKV RKF+FKAEHANMRTY+FAAD+RESM QW+NAL
Sbjct: 183 GPEEEKLLGSILLPSYRVTVCKPEDKVNRKFAFKAEHANMRTYHFAADSRESMNQWVNAL 242

Query: 101 SLASILQNSSTG 112
           +LA++LQ+ S G
Sbjct: 243 TLATLLQDPSPG 254

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791467|ref|XP_003251574.1| PREDICTED: hypothetical protein LOC100576695 [Apis mellifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 78/121 (64%), Gaps = 28/121 (23%)

Query: 41  GFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
           G EEEKLLGSILLPSY+++ C  +DKV RKF+FKAEHANMRTY+FAAD+RESM QW+NAL
Sbjct: 184 GPEEEKLLGSILLPSYRVTVCKPEDKVNRKFAFKAEHANMRTYHFAADSRESMNQWVNAL 243

Query: 101 SLASILQNSSTG--------------WEDRR------------LNN--EDNDSGFHGTYG 132
           +LA++LQ+ S G               E  R            LN   +D+DSGFHG   
Sbjct: 244 TLATLLQDPSPGGGEAAVVIEIGGGQQEGERSARPSVSSISSILNQSADDSDSGFHGFQS 303

Query: 133 R 133
           R
Sbjct: 304 R 304

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492005|ref|XP_003426754.1| PREDICTED: hypothetical protein LOC100678498 [Nasonia vitripennis]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 80/126 (63%), Gaps = 33/126 (26%)

Query: 41  GFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
           G EEEKLLGSILLPSY+++ C  +DK+ +KF+FKAEHANMRTY+FAADTRESM QW+NAL
Sbjct: 283 GPEEEKLLGSILLPSYRVTVCRPEDKINKKFAFKAEHANMRTYHFAADTRESMNQWVNAL 342

Query: 101 SLASILQNSSTG-------------WEDRRLNN--------------------EDNDSGF 127
           +LAS+LQ+ + G              + ++LN+                    +D+DSGF
Sbjct: 343 TLASLLQDPNPGGGEIVLAADGNVAQQQQQLNDGDRSARPSVSSISSIMNQSADDSDSGF 402

Query: 128 HGTYGR 133
           HG   R
Sbjct: 403 HGFQSR 408

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
FB|FBgn0085412	3022	CG34383 [Drosophila melanogast	0.65	0.034	0.480	3e-21
ZFIN|ZDB-GENE-050419-75	1208	plekha7a "pleckstrin homology	0.4	0.052	0.546	4.5e-14
UNIPROTKB|I3LDM9	168	I3LDM9 "Uncharacterized protei	0.406	0.386	0.523	4.9e-14
UNIPROTKB|F1NQ91	1019	F1NQ91 "Uncharacterized protei	0.406	0.063	0.538	4.2e-13
UNIPROTKB|F1MAH4	1204	Plekha5 "Protein Plekha5" [Rat	0.406	0.053	0.507	4.8e-13
UNIPROTKB|E9PTG5	1215	Plekha5 "Protein Plekha5" [Rat	0.406	0.053	0.507	4.9e-13
ZFIN|ZDB-GENE-041210-25	1237	plekha5 "pleckstrin homology d	0.493	0.063	0.481	6.9e-13
UNIPROTKB|F1SQZ2	1040	F1SQZ2 "Uncharacterized protei	0.406	0.062	0.523	1.2e-12
UNIPROTKB|E2RD14	1118	PLEKHA5 "Uncharacterized prote	0.406	0.058	0.523	1.3e-12
UNIPROTKB|B4DJX4	977	PLEKHA5 "cDNA FLJ59284, highly	0.406	0.066	0.523	1.4e-12

FB|FBgn0085412 CG34383 [Drosophila melanogaster (taxid:7227)]

 Score = 267 (99.0 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/104 (48%), Positives = 73/104 (70%)

Query:    41 GFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
             G EEEKLLGS+LLPSY++S C  +DK++RKF+FK EH NMRTY+ AAD  E+M+QW+ AL
Sbjct:   406 GPEEEKLLGSVLLPSYRVSACLPEDKIYRKFAFKCEHQNMRTYWLAADNSEAMMQWVRAL 465

Query:   101 SLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAE 144
             + AS++Q  S+G  +  +N+  N SG +   G  + ++ P   +
Sbjct:   466 AAASLMQAPSSGESEPSVNSSLNHSGENSDSGIHTLQSHPGKGQ 509

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-050419-75 plekha7a "pleckstrin homology domain containing, family A member 7a" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query:    44 EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
             EE +LGSI LPSY I+P   +D + RK++FKAEH  MRTYYF+ADT+E M  W+ A++ A
Sbjct:   196 EESVLGSIPLPSYTIAPVGPEDHISRKYAFKAEHTGMRTYYFSADTQEDMNGWVRAMNQA 255

Query:   104 SILQ 107
             +++Q
Sbjct:   256 ALMQ 259

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005813 "centrosome" evidence=ISS

GO:0045218 "zonula adherens maintenance" evidence=ISS

GO:0090136 "epithelial cell-cell adhesion" evidence=ISS

GO:0070097 "delta-catenin binding" evidence=ISS

GO:0005915 "zonula adherens" evidence=ISS

GO:0055007 "cardiac muscle cell differentiation" evidence=IMP

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|I3LDM9 I3LDM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:    98 KEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 157

Query:   103 ASILQ 107
             A+++Q
Sbjct:   158 AALVQ 162

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1NQ91 F1NQ91 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++IS  S +D + RK++FKA H NMRTYYF  DT + M  WM A++ 
Sbjct:   131 KEEGILGSILLPSFQISVLSPEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMTD 190

Query:   103 ASILQ 107
             A+++Q
Sbjct:   191 AALVQ 195

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1MAH4 Plekha5 "Protein Plekha5" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++I+  +++D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:   141 KEEGILGSILLPSFQIAMLTAEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 200

Query:   103 ASILQ 107
             A+++Q
Sbjct:   201 AALVQ 205

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E9PTG5 Plekha5 "Protein Plekha5" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++I+  +++D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:   141 KEEGILGSILLPSFQIAMLTAEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 200

Query:   103 ASILQ 107
             A+++Q
Sbjct:   201 AALVQ 205

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-041210-25 plekha5 "pleckstrin homology domain containing, family A member 5" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 40/83 (48%), Positives = 52/83 (62%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS+ IS  S DD + RK++FKA H NMRTYYF+ DT + M  WM  +S 
Sbjct:   205 KEEGILGSILLPSFHISMLSVDDHITRKYAFKATHPNMRTYYFSTDTAKDMESWMKVMSD 264

Query:   103 ASILQNSSTGWEDRRLNNEDNDS 125
             A++  +       RRL     DS
Sbjct:   265 AAMAHSEPI----RRLEKVKLDS 283

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1SQZ2 F1SQZ2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:   140 KEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 199

Query:   103 ASILQ 107
             A+++Q
Sbjct:   200 AALVQ 204

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2RD14 PLEKHA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:   207 KEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 266

Query:   103 ASILQ 107
             A+++Q
Sbjct:   267 AALVQ 271

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|B4DJX4 PLEKHA5 "cDNA FLJ59284, highly similar to Pleckstrin homology domain-containing family A member 5" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:    98 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 157

Query:   103 ASILQ 107
             A+++Q
Sbjct:   158 AALVQ 162

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6RSP1	PKHA7_DANRE	No assigned EC number	0.5223	0.4187	0.0559	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	8e-37
pfam00169	101	pfam00169, PH, PH domain	2e-10
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-10
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	3e-09
cd13236	105	cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain co	8e-08
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	3e-07
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	2e-05
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	4e-05
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	5e-05
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	8e-05
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	0.002
cd13235	113	cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstr	0.003
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	0.003

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score =  121 bits (307), Expect = 8e-37
 Identities = 47/62 (75%), Positives = 52/62 (83%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           EEEK LGSILLPSY ISP S  D++ RKF+FKAEHA MRTYYFAADT+E M QWM ALSL
Sbjct: 43  EEEKALGSILLPSYTISPASPSDEINRKFAFKAEHAGMRTYYFAADTQEEMEQWMKALSL 102

Query: 103 AS 104
           A+
Sbjct: 103 AA 104

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 20  HNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN 79
              Y +L   V+++  +         +  GSI L   +++     +   RK  F+    +
Sbjct: 19  KKRYFVLFDGVLLYYKDSKK---SSSRPKGSIPLSGCQVTKVPDSEDGKRKNCFEIRTGD 75

Query: 80  MRTYYFAADTRESMIQWMNALSLAS 104
             T+   A++ E   +W+ A+  A 
Sbjct: 76  RETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 20  HNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN 79
              Y +L    +++          + K  GSI L    +      D   +   F+ + ++
Sbjct: 19  KKRYFVLFNSTLLYYKSKKDKKSYKPK--GSIDLSGCTVREAPDPDSSKKPHCFEIKTSD 76

Query: 80  MRTYYFAADTRESMIQWMNALSLAS 104
            +T    A++ E   +W+ AL  A 
Sbjct: 77  RKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           ++EK  G I LP +KI   S   K   K++FKA H  ++T+YFAA+  + M +W++ L  
Sbjct: 52  QDEKAEGFINLPDFKIERASECKK---KYAFKASHPKIKTFYFAAENLDDMNKWLSKLIT 108

Query: 103 ASILQ 107
           A    
Sbjct: 109 AINKY 113

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241390 cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus

 Score = 47.3 bits (113), Expect = 8e-08
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 46  KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 104
           +   +I LP Y++S    ++++  K  FK   +  +++YF+A++ E   +W+ ALS A+
Sbjct: 48  RAPRTIPLPGYEVSVPPPEERLDGKHVFKLSQSK-QSHYFSAESEELQQRWLEALSRAA 105

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Not much is known about FGD2. FGD1 is the best characterized member of the group with mutations here leading to the X-linked disorder known as faciogenital dysplasia (FGDY). Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALS 101
            + K  G I L  ++++   S+ K   ++ FK    A  + +YFA D +E + +WM AL 
Sbjct: 34  NDSKEKGLIDLTGHRVTVDDSNSKP-GRYGFKLVPPAVEKVHYFAVDEKEVLREWMKALM 92

Query: 102 LAS 104
            A+
Sbjct: 93  KAT 95

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 48  LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 105
           LG I+L    +     ++     F+ + +    R+Y  AA+++E M  WM ALS AS 
Sbjct: 48  LGVIVLEGCTVELSEDEEPY--AFAIRFDGPGSRSYVLAAESQEDMESWMKALSRASY 103

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)

Query: 51 ILLPSYKISP---CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
          I LP + +SP     S     RK++FK  H     +YFAA+++E M +W++ 
Sbjct: 45 IFLPGFTVSPAPEVKS-----RKYAFKVYHTGT-VFYFAAESQEDMKKWLDL 90

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 45  EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 104
            +  G I L S  ++  S+++   ++F+F+      RT+Y  AD+ +   +W++A+   +
Sbjct: 45  SEPRGVIDL-SDCLTVKSAEEATNKEFAFEVSTPE-RTFYLIADSEKEKEEWISAI-GRA 101

Query: 105 ILQNSSTG 112
           I++ S + 
Sbjct: 102 IVKLSRSK 109

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 67  VFRKFSFKAEH--ANMRTYYFAADTRESMIQWM 97
             +KF FK  H   + RT+YF+A + + M +WM
Sbjct: 70  SKKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWM 102

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 43 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNA 99
          ++       L+P              +   F+    +  RTYY  A++ E   +W+ A
Sbjct: 35 KDSSKKPKGLIPLSDGLEVELVSSSGKPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
            ++E  L S+ L  Y +   S  D + + + FK +  +   Y+F A++  +  +WM  + 
Sbjct: 52  HQDEFPLASLPLLGYSVGLPSEADNIDKDYVFKLQFKS-HVYFFRAESEYTFERWMEVIR 110

Query: 102 LAS 104
            A+
Sbjct: 111 SAT 113

Members here include FARP1 (also called Chondrocyte-derived ezrin-like protein; PH domain-containing family C member 2), FARP2 (also called FIR/FERM domain including RhoGEF; FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc finger FYVE domain-containing protein 24). They are members of the Dbl family guanine nucleotide exchange factors (GEFs) which are upstream positive regulators of Rho GTPases. Little is known about FARP1 and FARP6, though FARP1 has increased expression in differentiated chondrocytes. FARP2 is thought to regulate neurite remodeling by mediating the signaling pathways from membrane proteins to Rac. It is found in brain, lung, and testis, as well as embryonic hippocampal and cortical neurons. FARP1 and FARP2 are composed of a N-terminal FERM domain, a proline-rich (PR) domain, Dbl-homology (DH), and two C-terminal PH domains. FARP6 is composed of Dbl-homology (DH), and two C-terminal PH domains separated by a FYVE domain. This hierarchy contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 69  RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRR 117
           RKF F+    + ++Y  AA++   M  W++ L+   ILQ  +   E++R
Sbjct: 77  RKFCFELRMQDGKSYVLAAESESEMDDWISKLN--KILQ-INKEQEEQR 122

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.92
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.89
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.89
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.87
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.87
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.86
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.85
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.85
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.85
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.84
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.84
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.83
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.83
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.83
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.82
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.82
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.82
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.82
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.82
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.76
KOG0930|consensus	395		99.71
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.69
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.67
PF15409	89	PH_8: Pleckstrin homology domain	99.65
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.65
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.64
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.55
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.54
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.54
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.53
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.52
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.48
KOG3640|consensus	1116		99.47
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.4
KOG3727|consensus	664		99.26
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	99.24
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	99.09
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.05
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.94
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.87
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.8
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.76
KOG2059|consensus	800		98.7
KOG0521|consensus	785		98.68
KOG3531|consensus	1036		98.67
KOG1090|consensus	1732		98.6
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.59
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	98.55
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	98.42
PTZ00267	478	NIMA-related protein kinase; Provisional	98.39
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.35
KOG3751|consensus	622		98.34
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.28
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	98.22
KOG0932|consensus	774		98.21
PLN02866	1068	phospholipase D	98.15
KOG0690|consensus	516		98.05
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.99
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	97.96
KOG1117|consensus	1186		97.93
KOG1739|consensus	611		97.93
KOG4424|consensus	623		97.91
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	97.8
KOG3543|consensus	1218		97.79
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.77
KOG0248|consensus	936		97.76
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.75
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.74
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.71
PTZ00283	496	serine/threonine protein kinase; Provisional	97.59
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.52
PF15406	112	PH_6: Pleckstrin homology domain	97.4
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	97.34
KOG1738|consensus	638		97.27
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	97.12
KOG4807|consensus	593		97.01
KOG1117|consensus	1186		96.97
KOG3723|consensus	851		96.87
KOG2070|consensus	661		96.56
KOG1737|consensus	799		96.53
KOG1451|consensus	812		96.39
KOG4424|consensus	623		95.6
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	95.5
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	95.46
KOG3549|consensus	505		95.35
PF15408	104	PH_7: Pleckstrin homology domain	95.16
KOG2996|consensus	865		95.13
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	94.49
PF15411	116	PH_10: Pleckstrin homology domain	94.11
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	93.95
KOG0705|consensus	749		93.44
KOG1264|consensus	1267		92.82
PF15404	185	PH_4: Pleckstrin homology domain	92.45
KOG0517|consensus	2473		91.74
KOG4407|consensus	1973		91.29
KOG3551|consensus	506		91.04
KOG4236|consensus	888		90.06
KOG0248|consensus	936		89.9
KOG3523|consensus	695		89.3
KOG4047|consensus	429		87.57
KOG1170|consensus	1099		85.96
KOG3531|consensus	1036		81.64

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.92  E-value=2.2e-24  Score=151.31  Aligned_cols=94  Identities=24%  Similarity=0.390  Sum_probs=81.4

Q ss_pred             CccceEEEEecCCC--CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            2 DHVCFLIILNDNMA--STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         2 ~~~~~~~~~~~~~~--~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      |+.|.|..-....|  .+.|++|||||++++|+|     |+++.+..+.|.|+|.+++|..+.+.   +++++|+|.+++
T Consensus         1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~y-----yk~~~~~~~~~~I~L~~~~v~~~~~~---~k~~~F~I~~~~   72 (96)
T cd01260           1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYW-----YRSKQDEKAEGLIFLSGFTIESAKEV---KKKYAFKVCHPV   72 (96)
T ss_pred             CceeEEEEecCCCCccccCceeEEEEEECCEEEE-----ECCCCCCccceEEEccCCEEEEchhc---CCceEEEECCCC
Confidence            67777766544433  668999999999999999     99999999999999999998776442   578999999887


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      .++|+|+|+|++|+++||++|++|
T Consensus        73 ~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          73 YKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHhC
Confidence            799999999999999999999986

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.89  E-value=3.3e-23  Score=152.51  Aligned_cols=98  Identities=20%  Similarity=0.251  Sum_probs=82.2

Q ss_pred             CCccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeEEEecC--CCCccCceeeEEE
Q psy407            1 MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYKISPCS--SDDKVFRKFSFKA   75 (160)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~~~--~~~~~~~~~~F~i   75 (160)
                      .||.|||.++.+.++.+.|+||||||++++|+|     |+.+++   ..|+|.|+|.+|.+..+.  +.+.+.|++.|.|
T Consensus         1 ~~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y-----~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i   75 (122)
T cd01263           1 VEYHGFLTMFEDTSGFGAWHRRWCALEGGEIKY-----WKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHL   75 (122)
T ss_pred             CccceeEEEEeccCCCCCceEEEEEEeCCEEEE-----EcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence            479999999999999999999999999999999     887666   679999999999876653  3345689999998


Q ss_pred             ee--CCc----------------e-EEEEEcCCHHHHHHHHHHHHHh
Q psy407           76 EH--ANM----------------R-TYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        76 ~~--~~~----------------r-~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      ..  +.+                + -++|+|||.+|+++||+||+.|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence            53  221                1 2689999999999999999874

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.89  E-value=1.1e-22  Score=143.40  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=76.0

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeC--CeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            5 CFLIILNDNMASTLCHNVYLLLAT--HVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~--~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      |+|..+..++..+.|+||||||++  +.|+|     |+++.+..|+|.|+|.++.+...+.    .+++.|.|.++ .|+
T Consensus         3 GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Y-----yk~~~d~~p~G~I~L~~~~~~~~~~----~~~~~F~i~t~-~r~   72 (95)
T cd01265           3 GYLHKIEGKGPLRGRRSRWFALDDRTCYLYY-----YKDSQDAKPLGRVDLSGAAFTYDPR----EEKGRFEIHSN-NEV   72 (95)
T ss_pred             ccEEEecCCCCCcCceeEEEEEcCCCcEEEE-----ECCCCcccccceEECCccEEEcCCC----CCCCEEEEEcC-CcE
Confidence            667777766668999999999984  47998     9999999999999999987765433    23679999876 589


Q ss_pred             EEEEcCCHHHHHHHHHHHHHh
Q psy407           83 YYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      |+|+|+|++||++||++|+.+
T Consensus        73 y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          73 IALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             EEEECCCHHHHHHHHHHHHhh
Confidence            999999999999999999986

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.87  E-value=2e-21  Score=142.84  Aligned_cols=95  Identities=15%  Similarity=0.232  Sum_probs=80.6

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc-
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-   80 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~-   80 (160)
                      |..|+|.  +..+..+.|++|||||.+++|+|     |+++++.++.|.|+|.+|.|..+...   .++++|+|..++. 
T Consensus         1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~y-----yk~~~~~~~~g~I~L~~~~v~~~~~~---~~~~~F~i~~~~~~   70 (125)
T cd01252           1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYY-----FEYTTDKEPRGIIPLENVSIREVEDP---SKPFCFELFSPSDK   70 (125)
T ss_pred             CcEEEEE--EeCCCCCCeEeEEEEEECCEEEE-----EcCCCCCCceEEEECCCcEEEEcccC---CCCeeEEEECCccc
Confidence            5667776  45556789999999999999999     99999999999999999998877442   5788999876553 


Q ss_pred             -------------------eEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           81 -------------------RTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        81 -------------------r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                                         ++|+|+|+|++|+.+||+||+.++..
T Consensus        71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~  115 (125)
T cd01252          71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP  115 (125)
T ss_pred             cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                               68999999999999999999998643

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.87  E-value=1.5e-21  Score=138.60  Aligned_cols=94  Identities=16%  Similarity=0.191  Sum_probs=77.1

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCC-ccCceeeEEEeeCCce
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDD-KVFRKFSFKAEHANMR   81 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~-~~~~~~~F~i~~~~~r   81 (160)
                      +.|.|..  .....+.|+||||||++++|+|     |+++.+..+.|.|+|.+|.|...+... ..+++++|.|.++ .|
T Consensus         4 k~G~L~K--kg~~~k~WkkRwfvL~~~~L~y-----yk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~-~r   75 (100)
T cd01233           4 KKGYLNF--PEETNSGWTRRFVVVRRPYLHI-----YRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTK-HR   75 (100)
T ss_pred             eeEEEEe--eCCCCCCcEEEEEEEECCEEEE-----EccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECC-CC
Confidence            3466644  3334588999999999999999     999999999999999999887764321 1246789999876 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|+|+|+|++|+.+||.+|+...
T Consensus        76 t~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          76 GYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             EEEEEcCCHHHHHHHHHHhhhhh
Confidence            99999999999999999998753

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.86  E-value=3.1e-21  Score=137.90  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=68.1

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC----eEEEec-CCCCccCceeeEEEeeCCceEEEEEcCCH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS----YKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTR   90 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~----~~V~~~-~~~~~~~~~~~F~i~~~~~r~~~l~Aese   90 (160)
                      .+.||||||||+++.|+|     |+++.+..+.|.|+|..    +.|... ++....+..++|.|.++ .|+|+|+|+|+
T Consensus        13 ~k~wkkRwFvL~~~~L~Y-----yk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-~Rty~l~a~s~   86 (103)
T cd01251          13 TEGFKKRWFTLDDRRLMY-----FKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-ERKFLFACETE   86 (103)
T ss_pred             CCCceeEEEEEeCCEEEE-----ECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-CeEEEEECCCH
Confidence            578999999999999999     99999999999999965    445432 22111133469999987 58999999999


Q ss_pred             HHHHHHHHHHHHhH
Q psy407           91 ESMIQWMNALSLAS  104 (160)
Q Consensus        91 ~e~~~Wi~aL~~a~  104 (160)
                      +|+.+||+||+.|.
T Consensus        87 ~e~~~Wi~ai~~v~  100 (103)
T cd01251          87 QDRREWIAAFQNVL  100 (103)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999985

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.85  E-value=7.1e-21  Score=135.89  Aligned_cols=83  Identities=18%  Similarity=0.275  Sum_probs=68.7

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCccCccc-eEEEcCCeE-EEecCCC-CccCceeeEEEeeCCceEEEEEcCCHH
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLL-GSILLPSYK-ISPCSSD-DKVFRKFSFKAEHANMRTYYFAADTRE   91 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~-g~I~L~~~~-V~~~~~~-~~~~~~~~F~i~~~~~r~~~l~Aese~   91 (160)
                      .+|.|+||||||+++.|+|     ||+..+.++. |.|+|..|. |..+... ...+++++|+|.+++ |+|||+|+|++
T Consensus        15 ~~K~WkrRwF~L~~~~L~y-----~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt~~l~A~se~   88 (101)
T cd01264          15 FIKRWKTRYFTLSGAQLLF-----QKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEK   88 (101)
T ss_pred             eeecceeEEEEEeCCEEEE-----EeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC-ceEEEEeCCHH
Confidence            5789999999999999999     9988665566 999999986 4444321 112457999999875 89999999999


Q ss_pred             HHHHHHHHHHHh
Q psy407           92 SMIQWMNALSLA  103 (160)
Q Consensus        92 e~~~Wi~aL~~a  103 (160)
                      ++++||++|+.|
T Consensus        89 e~e~WI~~i~~a  100 (101)
T cd01264          89 NAEEWLQCLNIA  100 (101)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999987

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.85  E-value=7.1e-21  Score=136.41  Aligned_cols=87  Identities=17%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeC---CceEEEEEc
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---NMRTYYFAA   87 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~---~~r~~~l~A   87 (160)
                      +-..|.||||||+|++..|+|     ||++++  ..+.+.|+|.+|+|.+....  .+++|+|++.+|   ++++|+|+|
T Consensus        14 ~~~~K~~KrrwF~lk~~~L~Y-----yK~kee~~~~p~i~lnl~gcev~~dv~~--~~~kf~I~l~~ps~~~~r~y~l~c   86 (106)
T cd01237          14 KLTLKGYKQYWFTFRDTSISY-----YKSKEDSNGAPIGQLNLKGCEVTPDVNV--AQQKFHIKLLIPTAEGMNEVWLRC   86 (106)
T ss_pred             hhhhhhheeEEEEEeCCEEEE-----EccchhcCCCCeEEEecCceEEcccccc--cccceEEEEecCCccCCeEEEEEC
Confidence            445788999999999999999     998877  45777888899998774321  256799999854   468999999


Q ss_pred             CCHHHHHHHHHHHHHhHhh
Q psy407           88 DTRESMIQWMNALSLASIL  106 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~~~  106 (160)
                      +||+++++||+||+.|+++
T Consensus        87 dsEeqya~Wmaa~rlas~g  105 (106)
T cd01237          87 DNEKQYAKWMAACRLASKG  105 (106)
T ss_pred             CCHHHHHHHHHHHHHhhCC
Confidence            9999999999999999865

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.85  E-value=1.7e-20  Score=131.46  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             ecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcC
Q psy407           11 NDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   88 (160)
Q Consensus        11 ~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Ae   88 (160)
                      |..+-.+.|++|||||+++.|+|     |+++.+  ..++|.|+|.+|.|...+     .+++.|.|.....++|+|.|+
T Consensus         7 K~~~~~k~Wk~RwFvL~~g~L~Y-----yk~~~~~~~~~~G~I~L~~~~i~~~~-----~~~~~F~i~~~~~r~~~L~A~   76 (91)
T cd01247           7 KWTNYINGWQDRYFVLKEGNLSY-----YKSEAEKSHGCRGSIFLKKAIIAAHE-----FDENRFDISVNENVVWYLRAE   76 (91)
T ss_pred             EeccccCCCceEEEEEECCEEEE-----EecCccCcCCCcEEEECcccEEEcCC-----CCCCEEEEEeCCCeEEEEEeC
Confidence            33456889999999999999999     999877  448999999999876542     235689997666699999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy407           89 TRESMIQWMNALSL  102 (160)
Q Consensus        89 se~e~~~Wi~aL~~  102 (160)
                      |++|+++||+||++
T Consensus        77 s~~e~~~Wi~al~~   90 (91)
T cd01247          77 NSQSRLLWMDSVVR   90 (91)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999999986

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.84  E-value=1.7e-20  Score=134.70  Aligned_cols=82  Identities=23%  Similarity=0.288  Sum_probs=67.6

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeE-EEecCCCCc----cCceeeEEEeeCCceEEEEEc
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYK-ISPCSSDDK----VFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~-V~~~~~~~~----~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      +.+.||+|||||++++|+|     |+++.+  ..++|.|+|.++. |+.+.+...    .+++++|+|.+++ ++|||.|
T Consensus        17 ~~~nwKkRwFvL~~~~L~Y-----yk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A   90 (106)
T cd01238          17 SPLNYKERLFVLTKSKLSY-----YEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFA   90 (106)
T ss_pred             CCCCceeEEEEEcCCEEEE-----ECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEc
Confidence            3458999999999999999     999876  4799999999976 444443221    2467899999864 7999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy407           88 DTRESMIQWMNALSL  102 (160)
Q Consensus        88 ese~e~~~Wi~aL~~  102 (160)
                      +|++|+++||.||++
T Consensus        91 ~s~~er~~WI~ai~~  105 (106)
T cd01238          91 PTEELRKRWIKALKQ  105 (106)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999986

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.84  E-value=3.7e-20  Score=130.24  Aligned_cols=93  Identities=19%  Similarity=0.255  Sum_probs=72.6

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeC--CeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCC----CccCceeeEEE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLAT--HVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSD----DKVFRKFSFKA   75 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~--~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~----~~~~~~~~F~i   75 (160)
                      |.|+|..  .....+.||+|||||++  ..|+|     |+++.+..|.|.|+|..++ |....+.    +...+.+.|.|
T Consensus         1 ~~G~L~K--~g~~~k~WkkRwFvL~~~~~~L~Y-----y~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i   73 (101)
T cd01235           1 CEGYLYK--RGALLKGWKPRWFVLDPDKHQLRY-----YDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDL   73 (101)
T ss_pred             CeEEEEE--cCCCCCCccceEEEEECCCCEEEE-----ecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEE
Confidence            4577764  44467899999999994  59999     9999999999999999865 4432211    11135678988


Q ss_pred             eeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           76 EHANMRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        76 ~~~~~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      .++ .|+|+|.|+|++|+.+||.+|+++
T Consensus        74 ~t~-~r~~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          74 KTS-KRTYNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             EeC-CceEEEECCCHHHHHHHHHHHHhh
Confidence            764 589999999999999999999986

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.83  E-value=4.7e-20  Score=132.38  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=65.0

Q ss_pred             CCCCceEEEEEEeC-CeEEEcccCCCCCC-ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           15 ASTLCHNVYLLLAT-HVMVFSPEISGLGF-EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        15 ~~k~WkkRWFVL~~-~~L~y~~~~yYk~~-~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      ..|.||||||||++ +.|+|     |+++ .+..|+|.|+|..|....... +..+++++|.|.+++ |+|||.|+|++|
T Consensus        20 ~~K~WkrRWFvL~~~~~L~y-----~~d~~~~~~p~G~IdL~~~~~V~~~~-~~~~~~~~f~I~tp~-R~f~l~Aete~E   92 (104)
T cd01236          20 RSKRWQRRWFILYDHGLLTY-----ALDEMPTTLPQGTIDMNQCTDVVDAE-ARTGQKFSICILTPD-KEHFIKAETKEE   92 (104)
T ss_pred             eeccccceEEEEeCCCEEEE-----eeCCCCCcccceEEEccceEEEeecc-cccCCccEEEEECCC-ceEEEEeCCHHH
Confidence            46789999999985 67777     7765 467899999998886433222 223567899999875 899999999999


Q ss_pred             HHHHHHHHHH
Q psy407           93 MIQWMNALSL  102 (160)
Q Consensus        93 ~~~Wi~aL~~  102 (160)
                      +++||++|..
T Consensus        93 ~~~Wi~~l~~  102 (104)
T cd01236          93 ISWWLNMLMV  102 (104)
T ss_pred             HHHHHHHHHh
Confidence            9999999974

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.83  E-value=5.8e-20  Score=130.59  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=74.1

Q ss_pred             ceEEEEecCCC----CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCC
Q psy407            5 CFLIILNDNMA----STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         5 ~~~~~~~~~~~----~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      |++++++..-+    .+.||+|||||++..|+|     |+++. ..+.|+|+|..+. |+.+.+ +..+++|+|+|.+++
T Consensus         3 ~~~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y-----~k~~~-~~~~g~I~L~~i~~ve~v~~-~~~~~~~~fqivt~~   75 (98)
T cd01244           3 GNLQQVDRSRLAWKKVLHFKKRYFQLTTTHLSW-----AKDVQ-CKKSALIKLAAIKGTEPLSD-KSFVNVDIITIVCED   75 (98)
T ss_pred             cccEEEEcccCCCccCcCCceeEEEECCCEEEE-----ECCCC-CceeeeEEccceEEEEEcCC-cccCCCceEEEEeCC
Confidence            56677776422    257999999999999999     99876 6799999999865 444544 334667999999875


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                       ++|||.|+|++|+++||.||+.+
T Consensus        76 -r~~yi~a~s~~E~~~Wi~al~k~   98 (98)
T cd01244          76 -DTMQLQFEAPVEATDWLNALEKQ   98 (98)
T ss_pred             -CeEEEECCCHHHHHHHHHHHhcC
Confidence             89999999999999999999864

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.83  E-value=4.4e-20  Score=131.18  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             ccceEEEEecCCC-CCCceEEEEEEeC----CeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEee
Q psy407            3 HVCFLIILNDNMA-STLCHNVYLLLAT----HVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~-~k~WkkRWFVL~~----~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~   77 (160)
                      |.|+|+  |..++ .|.||+|||+|.+    .+|+|     |+++.+.+|+|.|+|..+.|.++.+. ..+++|||+|.+
T Consensus         1 ~~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~y-----f~~~~~~~p~gli~l~~~~V~~v~ds-~~~r~~cFel~~   72 (98)
T cd01245           1 KKGNLL--KRTKSVTKLWKTLYFALILDGSRSHESL-----LSSPKKTKPIGLIDLSDAYLYPVHDS-LFGRPNCFQIVE   72 (98)
T ss_pred             CCCccc--cCCCCcccccceeEEEEecCCCCceEEE-----EcCCCCCCccceeeccccEEEEcccc-ccCCCeEEEEec
Confidence            356655  44445 8999999999986    89999     99999999999999999988887652 247889999998


Q ss_pred             CCc-eEEEEEcCCHHHHHHHHHHHHH
Q psy407           78 ANM-RTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        78 ~~~-r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                      +.. .+|+++|++ +|+++||++|+.
T Consensus        73 ~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          73 RALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            754 689999999 999999999985

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.82  E-value=1.2e-19  Score=129.62  Aligned_cols=84  Identities=13%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCC------eEEEcccCCCCCCcc-----CccceEEEcCCeEE-EecCCCCccCcee
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATH------VMVFSPEISGLGFEE-----EKLLGSILLPSYKI-SPCSSDDKVFRKF   71 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~------~L~y~~~~yYk~~~e-----~~~~g~I~L~~~~V-~~~~~~~~~~~~~   71 (160)
                      .|+|...      |.||||||||++.      .|.|     |+++.+     ..|.|+|+|.+|.. ...++   .+++|
T Consensus         5 ~GyL~K~------K~~kkRwFVLr~~~~~~p~~Ley-----yk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d---~k~~~   70 (101)
T cd01257           5 SGYLRKQ------KSMHKRFFVLRAESSGGPARLEY-----YENEKKFLQKGSAPKRVIPLESCFNINKRAD---AKHRH   70 (101)
T ss_pred             EEEEeEe------cCcEeEEEEEecCCCCCCceEEE-----ECChhhccccCCCceEEEEccceEEEeeccc---cccCe
Confidence            5777764      8999999999987      6999     999875     67999999999974 33322   25679


Q ss_pred             eEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy407           72 SFKAEHANMRTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        72 ~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                      +|.|.+++ ++|+|+|+|++|+++||.+|..
T Consensus        71 ~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          71 LIALYTRD-EYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             EEEEEeCC-ceEEEEeCCHHHHHHHHHHHhh
Confidence            99999876 7999999999999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.82  E-value=1.9e-19  Score=124.15  Aligned_cols=90  Identities=16%  Similarity=0.306  Sum_probs=74.0

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      |+|.. +...+.+.|++|||||+++.|.|     |+++.+  ..+.+.|+|.+|.|..+...  ..++++|.|.+++ ++
T Consensus         3 G~L~k-k~~~~~~~W~kr~~~L~~~~l~~-----y~~~~~~~~~~~~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~-~~   73 (94)
T cd01250           3 GYLYK-RSSKSNKEWKKRWFVLKNGQLTY-----HHRLKDYDNAHVKEIDLRRCTVRHNGKQ--PDRRFCFEVISPT-KT   73 (94)
T ss_pred             ceEEE-ECCCcCCCceEEEEEEeCCeEEE-----EcCCcccccccceEEeccceEEecCccc--cCCceEEEEEcCC-cE
Confidence            45544 33333688999999999999999     998876  67889999999988776542  1378999999876 89


Q ss_pred             EEEEcCCHHHHHHHHHHHHHh
Q psy407           83 YYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      |+|+|+|++++.+||.||+++
T Consensus        74 ~~f~a~s~~~~~~Wi~al~~~   94 (94)
T cd01250          74 WHFQADSEEERDDWISAIQES   94 (94)
T ss_pred             EEEECCCHHHHHHHHHHHhcC
Confidence            999999999999999999864

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.82  E-value=5.3e-19  Score=121.61  Aligned_cols=95  Identities=23%  Similarity=0.369  Sum_probs=83.3

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc---cCccceEEEcCCeEEEecCCCC---ccCceeeEEEe
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE---EEKLLGSILLPSYKISPCSSDD---KVFRKFSFKAE   76 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~---e~~~~g~I~L~~~~V~~~~~~~---~~~~~~~F~i~   76 (160)
                      |.|+|....  ...+.|++|||||.++.|+|     |+++.   ...+.+.|+|.++.|......+   ....+++|.|.
T Consensus         3 ~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~-----~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~   75 (104)
T PF00169_consen    3 KEGWLLKKS--SSRKKWKKRYFVLRDSYLLY-----YKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEIT   75 (104)
T ss_dssp             EEEEEEEEE--SSSSSEEEEEEEEETTEEEE-----ESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEE
T ss_pred             EEEEEEEEC--CCCCCeEEEEEEEECCEEEE-----EecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEE
Confidence            568888777  67789999999999999999     99988   6889999999999988865532   23678999999


Q ss_pred             eCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           77 HANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        77 ~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +++.++|+|+|+|++++.+||.+|+.|.
T Consensus        76 ~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   76 TPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             ETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            9887799999999999999999999985

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.82  E-value=1.6e-19  Score=129.84  Aligned_cols=82  Identities=21%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             CCCceEEEEEEeCCe-------EEEcccCCCCCCccCccceEEEcCCeEEEecCC---CCccCceeeEEEeeCCceEEEE
Q psy407           16 STLCHNVYLLLATHV-------MVFSPEISGLGFEEEKLLGSILLPSYKISPCSS---DDKVFRKFSFKAEHANMRTYYF   85 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~-------L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~---~~~~~~~~~F~i~~~~~r~~~l   85 (160)
                      .+.||||||||++..       |+|     |+++.+.+|.|.|+|..|.+.....   .......|.|.|.++ .|+|||
T Consensus        16 ~~~WkrRwFvL~~~~l~~~~~~L~Y-----yk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~-~r~y~l   89 (108)
T cd01266          16 RTKWVRRYFVLHCGDRERNLFALEY-----YKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETI-VRDLYL   89 (108)
T ss_pred             ccCcEEEEEEEeccccCCCcceEEE-----ECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeC-CccEEE
Confidence            458999999999875       588     9999999999999999987643321   111234678999876 589999


Q ss_pred             EcCCHHHHHHHHHHHHHh
Q psy407           86 AADTRESMIQWMNALSLA  103 (160)
Q Consensus        86 ~Aese~e~~~Wi~aL~~a  103 (160)
                      +|+|++||++||.+|++.
T Consensus        90 ~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          90 VAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EECCHHHHHHHHHHHHhh
Confidence            999999999999999874

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.82  E-value=2.4e-19  Score=122.95  Aligned_cols=88  Identities=20%  Similarity=0.245  Sum_probs=74.1

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccC--ccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~--~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      .|+|....  ...+.|++|||||+++.|+|     |+++.+.  .+.|.|+|.+|.|....     .++++|.|.+++.+
T Consensus         2 ~G~L~k~~--~~~~~W~~r~~vl~~~~L~~-----~~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~F~i~~~~~~   69 (91)
T cd01246           2 EGWLLKWT--NYLKGWQKRWFVLDNGLLSY-----YKNKSSMRGKPRGTILLSGAVISEDD-----SDDKCFTIDTGGDK   69 (91)
T ss_pred             eEEEEEec--ccCCCceeeEEEEECCEEEE-----EecCccCCCCceEEEEeceEEEEECC-----CCCcEEEEEcCCCC
Confidence            35554443  34588999999999999999     9999877  89999999999876532     34789999987778


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHh
Q psy407           82 TYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      +|+|+|+|++|+.+||.||+.|
T Consensus        70 ~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          70 TLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             EEEEECCCHHHHHHHHHHHHhC
Confidence            9999999999999999999875

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.76  E-value=5.1e-18  Score=120.53  Aligned_cols=85  Identities=21%  Similarity=0.285  Sum_probs=70.3

Q ss_pred             cCCCCCCceEEEEEEeCCeEEEcccCCCCCCccC--ccce--EEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEc
Q psy407           12 DNMASTLCHNVYLLLATHVMVFSPEISGLGFEEE--KLLG--SILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        12 ~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~--~~~g--~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      .+.+.+.|++|||||+++.|+|     |+++...  ...+  .|+|.++.|..+.+.  .+++++|.|..++.++|+|+|
T Consensus        16 ~~~~~~~Wk~r~~vL~~~~L~~-----ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~--~k~~~~F~l~~~~~~~~~f~a   88 (104)
T cd01253          16 KKASNRSWDNVYGVLCGQSLSF-----YKDEKMAAENVHGEPPVDLTGAQCEVASDY--TKKKHVFRLRLPDGAEFLFQA   88 (104)
T ss_pred             cccCCCCcceEEEEEeCCEEEE-----EecCcccccCCCCCCcEeccCCEEEecCCc--ccCceEEEEEecCCCEEEEEC
Confidence            3556778999999999999999     9987653  3444  788889888777542  267899999887779999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy407           88 DTRESMIQWMNALSLA  103 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a  103 (160)
                      +|+++|.+||++|+.|
T Consensus        89 ~s~e~~~~Wi~aL~~~  104 (104)
T cd01253          89 PDEEEMSSWVRALKSA  104 (104)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999999864

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0930|consensus

Probab=99.71  E-value=4.2e-17  Score=134.08  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=81.9

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC--
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--   79 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~--   79 (160)
                      |+-|.|+.+. .++.+.||||||||.++||||     |.--.+++|+|.|+|....|..+.+   ..++|||+|..+.  
T Consensus       261 dREGWLlKlg-g~rvktWKrRWFiLtdNCLYY-----Fe~tTDKEPrGIIpLeNlsir~Ved---P~kP~cfEly~ps~~  331 (395)
T KOG0930|consen  261 DREGWLLKLG-GNRVKTWKRRWFILTDNCLYY-----FEYTTDKEPRGIIPLENLSIREVED---PKKPNCFELYIPSNK  331 (395)
T ss_pred             cccceeeeec-CCcccchhheeEEeecceeee-----eeeccCCCCCcceeccccceeeccC---CCCCCeEEEecCCCC
Confidence            7789999984 347889999999999999999     8878889999999999988888854   2789999986442  


Q ss_pred             -------------------ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 -------------------MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 -------------------~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                                         +..|-++|.+.+|+.+||++|+.+..
T Consensus       332 gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  332 GQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             cCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                               45799999999999999999999864

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.69  E-value=2.2e-16  Score=115.53  Aligned_cols=83  Identities=13%  Similarity=0.237  Sum_probs=72.5

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCcc-------CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcC
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEE-------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   88 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Ae   88 (160)
                      .+.|+++||||+++.|++     ||++..       ......|.|.++.+.++.+.  .+|+++|+|.+++.+.|.|+|.
T Consensus        23 ~R~Wk~~y~vL~g~~L~~-----yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy--~Kr~~VF~L~~~~g~~~lfqA~   95 (117)
T cd01230          23 KRSWKMFYGILRGLVLYL-----QKDEHKPGKSLSETELKNAISIHHALATRASDY--SKKPHVFRLRTADWREFLFQTS   95 (117)
T ss_pred             CCcceEEEEEEECCEEEE-----EccCcccccccccccccceEEeccceeEeeccc--cCCCcEEEEEcCCCCEEEEECC
Confidence            578999999999999999     999864       45678999999887665543  3899999999988899999999


Q ss_pred             CHHHHHHHHHHHHHhHh
Q psy407           89 TRESMIQWMNALSLASI  105 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~~  105 (160)
                      +++||++||++|+.|+.
T Consensus        96 ~~ee~~~Wi~~I~~~~~  112 (117)
T cd01230          96 SLKELQSWIERINVVAA  112 (117)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999999873

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.67  E-value=4.4e-16  Score=110.99  Aligned_cols=91  Identities=16%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             cceEEEEecCCCCCCceEEEEEEe-CCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCC-CccCceeeEEEeeC---
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLA-THVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHA---   78 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~-~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~-~~~~~~~~F~i~~~---   78 (160)
                      .|.|..  .....+.|++|||||+ ++.|.|     |+++......|.|+|.++.|..+... ....+++.|.|...   
T Consensus         4 ~G~L~K--~g~~~~~Wk~R~f~L~~~~~l~~-----yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~   76 (102)
T cd01241           4 EGWLHK--RGEYIKTWRPRYFLLKSDGSFIG-----YKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWT   76 (102)
T ss_pred             EEEEEe--ecCCCCCCeeEEEEEeCCCeEEE-----EecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCC
Confidence            344443  4456789999999999 788887     77765544557888877765443210 01256689999721   


Q ss_pred             --CceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           79 --NMRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        79 --~~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                        ..|+  |.|+|++|+++||+||+.+
T Consensus        77 ~~~~r~--f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          77 TVIERT--FHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             cccCEE--EEeCCHHHHHHHHHHHHhh
Confidence              2344  4699999999999999876

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.65  E-value=1.5e-15  Score=105.97  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=67.7

Q ss_pred             CCCCCCceEEEEEE--eCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCH
Q psy407           13 NMASTLCHNVYLLL--ATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTR   90 (160)
Q Consensus        13 ~~~~k~WkkRWFVL--~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese   90 (160)
                      +.-.++|+||||||  ..+.|.|     |+++.+..+.|.|+|..+.|..-.      +...|.|.+ +...|+|.|.|+
T Consensus         8 r~~lqG~~kRyFvL~~~~G~LsY-----y~~~~~~~~rGsi~v~~a~is~~~------~~~~I~ids-g~~i~hLKa~s~   75 (89)
T PF15409_consen    8 RKPLQGWHKRYFVLDFEKGTLSY-----YRNQNSGKLRGSIDVSLAVISANK------KSRRIDIDS-GDEIWHLKAKSQ   75 (89)
T ss_pred             cccCCCceeEEEEEEcCCcEEEE-----EecCCCCeeEeEEEccceEEEecC------CCCEEEEEc-CCeEEEEEcCCH
Confidence            44578999999999  7899999     999988899999999998775542      223788876 467999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy407           91 ESMIQWMNALSLA  103 (160)
Q Consensus        91 ~e~~~Wi~aL~~a  103 (160)
                      ++.+.|++||+.|
T Consensus        76 ~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   76 EDFQRWVSALQKA   88 (89)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999986

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.65  E-value=1.2e-15  Score=111.95  Aligned_cols=80  Identities=14%  Similarity=0.282  Sum_probs=68.2

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCccCccceEEEc-CCeEEEecCCC---------CccCceeeEEEeeCCceEEEEEc
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILL-PSYKISPCSSD---------DKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L-~~~~V~~~~~~---------~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      .|++|||||++..|.|     |+++.+..++|.|.| .++.|......         +...+.+.|+|.++ .|+|.|.|
T Consensus        32 ~w~kRWFvlr~s~L~Y-----~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~-~R~~~l~a  105 (121)
T cd01254          32 RWQKRWFIVKESFLAY-----MDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNS-NRSLKLKC  105 (121)
T ss_pred             CCcceeEEEeCCEEEE-----EcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcC-CcEEEEEe
Confidence            6999999999999999     999999999999999 55777754331         22356799999886 58999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy407           88 DTRESMIQWMNALSLA  103 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a  103 (160)
                      +|+.++.+||++|+.|
T Consensus       106 ~s~~~~~~Wi~~i~~a  121 (121)
T cd01254         106 KSSRKLKQWMASIEDA  121 (121)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999999875

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=99.64  E-value=8.7e-15  Score=98.66  Aligned_cols=96  Identities=20%  Similarity=0.298  Sum_probs=77.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|...... +...|++|||+|.+++|.|     |+++..   ..+.+.|+|.++.|............++|.|..++
T Consensus         3 ~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~-----~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~   76 (102)
T smart00233        3 KEGWLYKKSGG-KKKSWKKRYFVLFNSTLLY-----YKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTAD   76 (102)
T ss_pred             eeEEEEEeCCC-ccCCceEEEEEEECCEEEE-----EeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecC
Confidence            45666554443 6678999999999999999     988766   57899999999988776543212467899999876


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           80 MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ..+|+|+|+|++++.+|+.+|+.++
T Consensus        77 ~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       77 RRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHhh
Confidence            5599999999999999999999874

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.55  E-value=1.5e-13  Score=92.55  Aligned_cols=93  Identities=18%  Similarity=0.278  Sum_probs=75.0

Q ss_pred             cceEEEEecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCccCccc-eEEEcCCeEEEecCCCCccCceeeEEEeeCC-
Q psy407            4 VCFLIILNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLL-GSILLPSYKISPCSSDDKVFRKFSFKAEHAN-   79 (160)
Q Consensus         4 ~~~~~~~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~-g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-   79 (160)
                      .|+|..+....  +.+.|++|||+|.+..|+|     |+++.+..+. +.++|.+..|......  ...+++|.|.... 
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~-----~~~~~~~~~~~~~~~l~~~~v~~~~~~--~~~~~~F~i~~~~~   74 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLL-----YKSDDKKEIKPGSIPLSEISVEEDPDG--SDDPNCFAIVTKDR   74 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEE-----EEcCCCCcCCCCEEEccceEEEECCCC--CCCCceEEEECCCC
Confidence            35566555554  3578999999999999999     9988776666 7999999877665432  1467899998874 


Q ss_pred             -ceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           80 -MRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        80 -~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                       .+.++|+|+|+++++.||++|+.|
T Consensus        75 ~~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          75 GRRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             CcEEEEEEcCCHHHHHHHHHHHhcC
Confidence             789999999999999999999875

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.54  E-value=5.7e-14  Score=93.84  Aligned_cols=81  Identities=22%  Similarity=0.322  Sum_probs=69.0

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      .+.|++|||+|.+..|.+     |+....   ..+.+.|+|.++.|......  .+..++|.|...+.+.|+|+|+|++|
T Consensus        13 ~~~w~~~~~~L~~~~l~~-----~~~~~~~~~~~~~~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~~~~~~~~~~s~~~   85 (96)
T cd00821          13 RKGWKRRWFVLFNDLLLY-----YKKKSSKKSYKPKGSIPLSGAEVEESPDD--SGRKNCFEIRTPDGRSYLLQAESEEE   85 (96)
T ss_pred             hCCccEEEEEEECCEEEE-----EECCCCCcCCCCcceEEcCCCEEEECCCc--CCCCcEEEEecCCCcEEEEEeCCHHH
Confidence            378999999999999998     877765   68999999999888776542  13578999987665899999999999


Q ss_pred             HHHHHHHHHHh
Q psy407           93 MIQWMNALSLA  103 (160)
Q Consensus        93 ~~~Wi~aL~~a  103 (160)
                      +.+|+++|+.|
T Consensus        86 ~~~W~~~l~~~   96 (96)
T cd00821          86 REEWIEALQSA   96 (96)
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.54  E-value=6.8e-14  Score=98.87  Aligned_cols=90  Identities=12%  Similarity=0.133  Sum_probs=74.3

Q ss_pred             EEecCCCCC-CceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-------c
Q psy407            9 ILNDNMAST-LCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------M   80 (160)
Q Consensus         9 ~~~~~~~~k-~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-------~   80 (160)
                      .++.-+-++ .=|+|||||.+.||+|     |++.++++++|.|+|.+..|..+... -..++|+|.|.+++       .
T Consensus         8 ~~~n~~~m~ggsK~~WFVLt~~~L~w-----ykd~eeKE~kyilpLdnLk~Rdve~g-f~sk~~~FeLfnpd~rnvykd~   81 (110)
T cd01256           8 SISNVGIMKGGSKDYWFVLTSESLSW-----YKDDEEKEKKYMLPLDGLKLRDIEGG-FMSRNHKFALFYPDGRNVYKDY   81 (110)
T ss_pred             EeeccceecCCCcceEEEEecceeee-----ecccccccccceeeccccEEEeeccc-ccCCCcEEEEEcCcccccccch
Confidence            344444433 3799999999999999     99999999999999999999888652 24788999998764       4


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           81 RTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ++.-|+|+|.+++..|.+.+-.|.
T Consensus        82 k~lel~~~~~e~vdswkasflrag  105 (110)
T cd01256          82 KQLELGCETLEEVDSWKASFLRAG  105 (110)
T ss_pred             heeeecCCCHHHHHHHHHHHHhcc
Confidence            667899999999999999988873

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.53  E-value=8.3e-14  Score=101.86  Aligned_cols=83  Identities=25%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCcc--------------CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEE--------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM   80 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--------------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~   80 (160)
                      +.+.|+..|+||++..|++     ||++..              ..|.+.|.|.++....+.+-  .+|+|+|+|.+++.
T Consensus        22 ~~R~Wk~~y~vL~g~~L~~-----~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY--~Kr~~VFrL~~~dg   94 (119)
T PF15410_consen   22 SKRSWKQVYAVLQGGQLYF-----YKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY--TKRKNVFRLRTADG   94 (119)
T ss_dssp             S---EEEEEEEEETTEEEE-----ESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB--TTCSSEEEEE-TTS
T ss_pred             CCCCccEEeEEEECCEEEE-----EccCcccccCCcccccccccCcceeEEEecceEEEeCccc--ccCCeEEEEEeCCC
Confidence            5678999999999999999     998432              23567799999888775442  47999999999888


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           81 RTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ..|.|+|.|++||++||.+|+.++
T Consensus        95 ~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   95 SEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             -EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhc
Confidence            999999999999999999999875

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.52  E-value=2e-13  Score=97.05  Aligned_cols=83  Identities=16%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCC-----ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEc
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGF-----EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~-----~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      ....+.|+.|||+|-+..|.|     ++..     ..-.+++.|+|.++.|....+   ...+|+|.|.... ++|+|+|
T Consensus        12 ~~~~~~~k~RyffLFnd~Ll~-----~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~---~~~~~~F~I~~~~-rsf~l~A   82 (101)
T cd01219          12 SSTTEKTEERYLFLFNDLLLY-----CVPRKMIGGSKFKVRARIDVSGMQVCEGDN---LERPHSFLVSGKQ-RCLELQA   82 (101)
T ss_pred             ecCCCCceeEEEEEeCCEEEE-----EEcccccCCCcEEEEEEEecccEEEEeCCC---CCcCceEEEecCC-cEEEEEc
Confidence            344578999999998888888     7742     124578999999999876532   2578999998765 8999999


Q ss_pred             CCHHHHHHHHHHHHHhH
Q psy407           88 DTRESMIQWMNALSLAS  104 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~  104 (160)
                      +|++|+.+||.||+.|+
T Consensus        83 ~s~eEk~~W~~ai~~~i   99 (101)
T cd01219          83 RTQKEKNDWVQAIFSII   99 (101)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999986

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.48  E-value=6.9e-13  Score=94.35  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccC---ccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEE---KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~---~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      |-|+.+-.+   +.|+|+||.+.|..||+     .+.....   ++.|.|+|.++.|..+.+.  .+.+|+|+|.++ .+
T Consensus         6 G~L~K~~~k---~~~~R~~FLFnD~LlY~-----~~~~~~~~~y~~~~~i~L~~~~V~~~~~~--~~~~~~F~I~~~-~k   74 (99)
T cd01220           6 GCLLKLSKK---GLQQRMFFLFSDLLLYT-----SKSPTDQNSFRILGHLPLRGMLTEESEHE--WGVPHCFTIFGG-QC   74 (99)
T ss_pred             EEEEEEeCC---CCceEEEEEccceEEEE-----EeecCCCceEEEEEEEEcCceEEeeccCC--cCCceeEEEEcC-Ce
Confidence            455555443   46889999999988887     5443332   5899999999998876542  256789999976 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|.|+|.|++|+.+||.+|+.|+
T Consensus        75 s~~l~A~s~~Ek~~Wi~~i~~aI   97 (99)
T cd01220          75 AITVAASTRAEKEKWLADLSKAI   97 (99)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999986

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3640|consensus

Probab=99.47  E-value=5.8e-14  Score=129.26  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeEEEecCC--CCccCceeeEEEe
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYKISPCSS--DDKVFRKFSFKAE   76 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~~~~--~~~~~~~~~F~i~   76 (160)
                      -..|||+|+++..|++.|+||||+|.++++.|     .|.+.+   +.|.|.|+|..|+=..+.+  ++-+.+.+.|.|+
T Consensus       991 EYrGFLtmfed~sgfGaWhRyWc~L~gg~I~f-----Wk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie 1065 (1116)
T KOG3640|consen  991 EYRGFLTMFEDGSGFGAWHRYWCALHGGEIKF-----WKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIE 1065 (1116)
T ss_pred             eeeeeeeeeeccCCCchhhhhhHHhcCCeeee-----ecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEE
Confidence            36799999999999999999999999999999     555544   5699999999997433322  2446888999987


Q ss_pred             eC------------Cce-EEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           77 HA------------NMR-TYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        77 ~~------------~~r-~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      ..            ..| ..+|+|++.++++.|+++|..+...
T Consensus      1066 ~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1066 VWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred             eecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence            21            123 6899999999999999999998643

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.40  E-value=6.3e-12  Score=91.09  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=50.6

Q ss_pred             ceEEEEecCCCCCCceEEEEEEe-CCeEEEcccCCCCCCcc-------------CccceEEEc--CCeEEEe---cCCCC
Q psy407            5 CFLIILNDNMASTLCHNVYLLLA-THVMVFSPEISGLGFEE-------------EKLLGSILL--PSYKISP---CSSDD   65 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~-~~~L~y~~~~yYk~~~e-------------~~~~g~I~L--~~~~V~~---~~~~~   65 (160)
                      |+|-....+ -.+.||+|||||+ ++.|.|     ||.+.+             ....|.+..  ....+..   ....+
T Consensus         3 G~l~K~~~~-~~kgWk~RwFiL~k~~~L~Y-----yK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (112)
T PF15413_consen    3 GYLYKWGNK-FGKGWKKRWFILRKDGVLSY-----YKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFG   76 (112)
T ss_dssp             EEEEE--TT-S-S--EEEEEEEE-TTEEEE-----ESS-------------TT-SB-SEEEE---GGGT-EEEES-T--S
T ss_pred             ceEEEecCC-CCcCccccEEEEEeCCEEEE-----eecccccccccccccchhceEeecccCcccccccccccccCCccc
Confidence            444444444 3679999999999 999999     998322             222333332  1111211   11111


Q ss_pred             ccCceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           66 KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        66 ~~~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                       ..-...|.|.++ .++|+|.|+|.+|+.+||.||+.|
T Consensus        77 -~~~~~~~~i~T~-~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   77 -EIHLKVFSIFTP-TKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             -S-SSEEEEEE-S-S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             -CcCCCCcEEECC-CcEEEEEECCHHHHHHHHHHHHhC
Confidence             112346777665 589999999999999999999876

>KOG3727|consensus

Probab=99.26  E-value=1.6e-13  Score=120.94  Aligned_cols=109  Identities=16%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEec-CCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~-~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      +.|...|++.....+.|     |++.  ..|-+.|+|.||+|.++ +.......+++.+...+++..+||+|++|+++.+
T Consensus       377 r~f~t~~dl~~~~~~s~-----~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~  449 (664)
T KOG3727|consen  377 RYFFTFRDLHLSLYKSS-----EDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYAR  449 (664)
T ss_pred             hHHHHHHHHHHHHHhhH-----hhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHH
Confidence            33444455555556665     6655  67999999999999774 4432223444555555778999999999999999


Q ss_pred             HHHHHHHhHhhccCCCcccccccccC-CCCCCCCCcCCCCCC
Q psy407           96 WMNALSLASILQNSSTGWEDRRLNNE-DNDSGFHGTYGRSSN  136 (160)
Q Consensus        96 Wi~aL~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~  136 (160)
                      ||+||+.|+++.++    +|.+|.+| +++.++..||++.+.
T Consensus       450 WMAaCrLASKGktM----ADSSY~sEV~sIlsfL~MQ~~n~g  487 (664)
T KOG3727|consen  450 WMAACRLASKGKTM----ADSSYQSEVQSILSFLKMQRPNSG  487 (664)
T ss_pred             HHHHhhHhhcCCcc----ccccccHHHHHHHHHHHhcCCCCC
Confidence            99999999999999    88889888 888999999998774

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=99.24  E-value=1.1e-11  Score=88.48  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             CCccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCC--------ccCceee
Q psy407            1 MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDD--------KVFRKFS   72 (160)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~--------~~~~~~~   72 (160)
                      |.|.|||.... ...+|.||||||||.+=.-|-+-.+.|+.++ ..|...|.|.|++|.-+++..        ....+|-
T Consensus         2 mk~sGyL~k~G-g~~~KkWKKRwFvL~qvsQYtfamcsy~ekk-s~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~f   79 (117)
T cd01234           2 MKHCGYLYAIG-KNVWKKWKKRFFVLVQVSQYTFAMCSYREKK-AEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHF   79 (117)
T ss_pred             CceeEEEEecc-chhhhhhheeEEEEEchhHHHHHHHhhhhhc-CCchhheeecceEEeccCCCCCCcccccccccchhh
Confidence            55777766543 3467999999999997443333344476444 569999999999998765432        1145677


Q ss_pred             EEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           73 FKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        73 F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      |+..-. ..+..|++++|.|+.-||.||-.|.
T Consensus        80 f~avke-gd~~~fa~~de~~r~lwvqa~yrat  110 (117)
T cd01234          80 FNAVKE-GDELKFATDDENERHLWVQAMYRAT  110 (117)
T ss_pred             hheecc-CcEEEEeccchHHHHHHHHHHHHHc
Confidence            877654 4689999999999999999999986

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=99.09  E-value=4e-10  Score=81.44  Aligned_cols=98  Identities=14%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             EEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CC--ccCceeeEEEeeCC----
Q psy407            7 LIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DD--KVFRKFSFKAEHAN----   79 (160)
Q Consensus         7 ~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~--~~~~~~~F~i~~~~----   79 (160)
                      ++.|++ .|-|.||||||+|+...|||+|-+--|+  .........+.+..|-..-. ..  ..--.|+|.|.++.    
T Consensus         5 ~LylK~-~gkKsWKk~~f~LR~SGLYy~~Kgksk~--srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~   81 (114)
T cd01259           5 PLYLKA-DGKKSWKKYYFVLRSSGLYYFPKEKTKN--TRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSK   81 (114)
T ss_pred             eEEEcc-CCCccceEEEEEEeCCeeEEccCCCcCC--HHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcc
Confidence            344443 3558999999999999999833221111  12233445666665543211 10  00124677775432    


Q ss_pred             --ceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           80 --MRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        80 --~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                        ...-+|+||+++.+..||.|||.|..+.
T Consensus        82 ~s~~ik~lCaeDe~t~~~W~ta~Ri~KyG~  111 (114)
T cd01259          82 GSQSIKYLCAEDLPTLDRWLTAIRIAKYGK  111 (114)
T ss_pred             cchhheeeccCCHHHHHHHHHHHHHHhhhh
Confidence              2346999999999999999999987654

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.05  E-value=4.6e-09  Score=75.41  Aligned_cols=89  Identities=11%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCC---CccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLG---FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~---~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      |-|+.+-    -+.-+.|+|.|-...|.|     -+-   ...-+..+.|+|.++.|..+.+.  ..-+++|+|.++. +
T Consensus         8 G~L~K~~----rk~~~~R~ffLFnD~LvY-----~~~~~~~~~~~~~~~i~L~~~~v~~~~d~--~~~~n~f~I~~~~-k   75 (104)
T cd01218           8 GVLTKMC----RKKPKQRQFFLFNDILVY-----GNIVISKKKYNKQHILPLEGVQVESIEDD--GIERNGWIIKTPT-K   75 (104)
T ss_pred             CcEEEee----cCCCceEEEEEecCEEEE-----EEeecCCceeeEeeEEEccceEEEecCCc--ccccceEEEecCC-e
Confidence            4455444    345677999999989987     321   11235678999999998877543  2457899999864 8


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           82 TYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|.+.|+|++|..+||.+|..|+.
T Consensus        76 Sf~v~A~s~~eK~eWl~~i~~ai~   99 (104)
T cd01218          76 SFAVYAATETEKREWMLHINKCVT   99 (104)
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999974

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.94  E-value=1.9e-08  Score=72.59  Aligned_cols=93  Identities=12%  Similarity=0.159  Sum_probs=70.4

Q ss_pred             eEEEEecCCCC---CCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCC-eEEEecCCC-----CccCceeeE
Q psy407            6 FLIILNDNMAS---TLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPS-YKISPCSSD-----DKVFRKFSF   73 (160)
Q Consensus         6 ~~~~~~~~~~~---k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~-~~V~~~~~~-----~~~~~~~~F   73 (160)
                      +.+.+-++++.   ++|+|+|+||.+..|++     |..+.+   ..|...|.|.. +.|..+...     +...-++.|
T Consensus         4 GwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~l-----Yd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF   78 (112)
T cd01242           4 GWLSLPNRTNKSRKPGWKKQYVVVSSRKILF-----YNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIF   78 (112)
T ss_pred             eeEEccCCCCccccCCceEEEEEEeCCEEEE-----EecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEE
Confidence            34556666554   58999999999999998     887665   34778888865 555555322     223568899


Q ss_pred             EEeeC-CceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           74 KAEHA-NMRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        74 ~i~~~-~~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      +|... ..++.+|-|+++.|.+.|+.+|..-
T Consensus        79 ~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~  109 (112)
T cd01242          79 QILYANEARDLLLLAPQTDEQNKWVSRLVKK  109 (112)
T ss_pred             EEEeCCccceEEEEeCCchHHHHHHHHHHHh
Confidence            99864 3589999999999999999999874

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.87  E-value=3e-08  Score=71.02  Aligned_cols=91  Identities=12%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             ceEEEEecCCCCC-CceEEEEEEeCC--eEEEcccCCCCCC----c-cCccceEEEcCCeEEEecCCCCccCceeeEEEe
Q psy407            5 CFLIILNDNMAST-LCHNVYLLLATH--VMVFSPEISGLGF----E-EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE   76 (160)
Q Consensus         5 ~~~~~~~~~~~~k-~WkkRWFVL~~~--~L~y~~~~yYk~~----~-e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~   76 (160)
                      |.|-+-+ +.+.+ .|.+.||.....  .+.+.  .+....    . ...---.|.|..|.+...+..   .|+|||.|.
T Consensus         3 GYLy~~~-k~~~~~~Wvk~y~~~~~~~~~f~m~--~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~---dRRFCFei~   76 (104)
T cd01249           3 GYLYMQE-KSKFGGSWTKYYCTYSKETRIFTMV--PFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI---DKRFCFDVE   76 (104)
T ss_pred             ceEEEEc-CCCCCCeEEEEEEEEEcCCcEEEEE--ecccccccccCcccccceEEeeeeccccccCCc---cceeeEeee
Confidence            4444444 55555 799999998853  32110  002110    1 111223578888998887664   789999998


Q ss_pred             eCCc-eEEEEEcCCHHHHHHHHHHHH
Q psy407           77 HANM-RTYYFAADTRESMIQWMNALS  101 (160)
Q Consensus        77 ~~~~-r~~~l~Aese~e~~~Wi~aL~  101 (160)
                      .+.. .++.|+|+|++++..||.|+.
T Consensus        77 ~~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          77 VEEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             ecCCCCeEEEEecCHHHHHHHHHhhc
Confidence            7642 389999999999999999984

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.80  E-value=1e-07  Score=69.77  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             EEEecCCC-CCCceEEEEEEeCCeEEEcccCCCCCCccC------ccceEEEcC--CeEEEecCCC-----CccCceeeE
Q psy407            8 IILNDNMA-STLCHNVYLLLATHVMVFSPEISGLGFEEE------KLLGSILLP--SYKISPCSSD-----DKVFRKFSF   73 (160)
Q Consensus         8 ~~~~~~~~-~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~------~~~g~I~L~--~~~V~~~~~~-----~~~~~~~~F   73 (160)
                      +.+-++++ -++|+|+|+||.+..|++     |..+.+.      .+.-.|.|+  .+.|..|...     +...-++.|
T Consensus         8 vkvP~~~~~krGW~r~~vVv~~~Kl~l-----Yd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           8 VKIPKPGGVKKGWQRALVVVCDFKLFL-----YDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             EeccCCCCcccCceEEEEEEeCCEEEE-----EeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            34444444 357999999999999998     8866542      355667884  3777765432     233568899


Q ss_pred             EEeeC------CceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           74 KAEHA------NMRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        74 ~i~~~------~~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      +|+..      ...+.+|-|+|+.|.++|+.||..-
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            99752      3478999999999999999999863

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.76  E-value=1.6e-07  Score=68.33  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=67.5

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc-----------cCccceEEEcCCeEEEecCCCCccCceeeE
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE-----------EEKLLGSILLPSYKISPCSSDDKVFRKFSF   73 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~-----------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F   73 (160)
                      |-|+.+-.+  -+..+.|+|.|-++.|.|     =|...           .-..++.|+|..+.|...++.+  .-+++|
T Consensus         8 G~L~ki~~~--~~~~q~R~~FLFd~~Li~-----CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~--~~knaF   78 (112)
T cd01261           8 GTLTRVGPS--KKAKHERHVFLFDGLMVL-----CKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS--EYKNAF   78 (112)
T ss_pred             CcEEEEecc--cCCcceEEEEEecCeEEE-----EEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc--ccCceE
Confidence            445555432  257889999999988876     44211           2345677999998887665432  348899


Q ss_pred             EEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           74 KAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        74 ~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|.+.+.+.|.|+|.|++|..+||.+|..+.
T Consensus        79 ~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~  109 (112)
T cd01261          79 EIILKDGNSVIFSAKNAEEKNNWMAALISVQ  109 (112)
T ss_pred             EEEcCCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence            9987556789999999999999999999875

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=98.70  E-value=3.2e-08  Score=89.80  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=69.3

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      +.+|||||.|....|.|     -|++. ..+.+.|+|.++. |+.+.+ ...+.+++|+|++++ |+.||+|.+-.|.++
T Consensus       584 ~~FKKryf~LT~~~Ls~-----~Ksp~-~q~~~~Ipl~nI~avEklee-~sF~~knv~qVV~~d-rtly~Q~~n~vEand  655 (800)
T KOG2059|consen  584 KNFKKRYFRLTTEELSY-----AKSPG-KQPIYTIPLSNIRAVEKLEE-KSFKMKNVFQVVHTD-RTLYVQAKNCVEAND  655 (800)
T ss_pred             hhhhheEEEeccceeEE-----ecCCc-cCcccceeHHHHHHHHHhhh-hccCCCceEEEEecC-cceeEecCCchHHHH
Confidence            46999999999999998     77765 5699999999854 333433 345789999999987 799999999999999


Q ss_pred             HHHHHHHhHhhc
Q psy407           96 WMNALSLASILQ  107 (160)
Q Consensus        96 Wi~aL~~a~~~~  107 (160)
                      |+++|+.++...
T Consensus       656 WldaL~kvs~~N  667 (800)
T KOG2059|consen  656 WLDALRKVSCCN  667 (800)
T ss_pred             HHHHHHHHhccC
Confidence            999999987654

>KOG0521|consensus

Probab=98.68  E-value=9.9e-09  Score=95.44  Aligned_cols=86  Identities=14%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      .+..+.|+||||-..++.+.|     ++.-........++|..|.|.++...  ..++|||+|+++ .++|.|+||++.+
T Consensus       285 ~~~~~tw~r~~f~~q~~~l~~-----~~r~~~~~~~~~~dL~~csvk~~~~~--~drr~CF~iiS~-tks~~lQAes~~d  356 (785)
T KOG0521|consen  285 SNASKTWKRRWFSIQDGQLGY-----QHRGADAENVLIEDLRTCSVKPDAEQ--RDRRFCFEIISP-TKSYLLQAESEKD  356 (785)
T ss_pred             ccchhhHHhhhhhhhcccccc-----ccccccccccccccchhccccCCccc--ccceeeEEEecC-CcceEEecCchhH
Confidence            345788999999999988887     54443333377889999999888653  368999999985 5899999999999


Q ss_pred             HHHHHHHHHHhHhh
Q psy407           93 MIQWMNALSLASIL  106 (160)
Q Consensus        93 ~~~Wi~aL~~a~~~  106 (160)
                      .++||.+|+..+..
T Consensus       357 ~~~Wi~~i~nsi~s  370 (785)
T KOG0521|consen  357 CQDWISALQNSILS  370 (785)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>KOG3531|consensus

Probab=98.67  E-value=6.6e-09  Score=95.56  Aligned_cols=83  Identities=19%  Similarity=0.430  Sum_probs=75.8

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      ...|+|-|+|+...||++     ||+-++..++.+++|-|++|.+-...++..|.|+|++...+ ..|+|+||+.-..++
T Consensus       937 ssgwqkLwvvft~fcl~f-----yKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~-hvyffraes~yt~~r 1010 (1036)
T KOG3531|consen  937 SSGWQKLWVVFTNFCLFF-----YKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKS-HVYFFRAESYYTFER 1010 (1036)
T ss_pred             cccceeeeeeecceeeEe-----ecccccccccccccccccccCCCCCCCCcchhheeeeehhh-hHHHHhhhhhhhhhh
Confidence            448999999999999999     99999999999999999999887666778999999998865 579999999999999


Q ss_pred             HHHHHHHhH
Q psy407           96 WMNALSLAS  104 (160)
Q Consensus        96 Wi~aL~~a~  104 (160)
                      ||.+|+.|.
T Consensus      1011 w~evi~~a~ 1019 (1036)
T KOG3531|consen 1011 WMEVITDAP 1019 (1036)
T ss_pred             HHHHhhcCC
Confidence            999999874

>KOG1090|consensus

Probab=98.60  E-value=1.8e-08  Score=94.26  Aligned_cols=85  Identities=21%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             CCCCCCceEEEEEEe--CCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCceEEEEEcCC
Q psy407           13 NMASTLCHNVYLLLA--THVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADT   89 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~--~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aes   89 (160)
                      .-..|.||.|||||.  .+.|+|     |.+.++++|.|.|.|.+.+ |....++. ..++--|.+.+. .|+|-|+|+|
T Consensus      1644 GA~lK~Wk~RwFVLd~~khqlrY-----Yd~~edt~pkG~IdLaevesv~~~~~k~-vdekgffdlktt-~rvynf~a~n 1716 (1732)
T KOG1090|consen 1644 GAKLKLWKPRWFVLDPDKHQLRY-----YDDFEDTKPKGCIDLAEVESVALIGPKT-VDEKGFFDLKTT-NRVYNFCAQN 1716 (1732)
T ss_pred             chhhcccccceeEecCCccceee-----ecccccccccchhhhhhhhhhcccCccc-cCccceeeeehh-hHHHHHHhcc
Confidence            344678999999998  469999     9999999999999998864 44433332 345556888765 5899999999


Q ss_pred             HHHHHHHHHHHHHhH
Q psy407           90 RESMIQWMNALSLAS  104 (160)
Q Consensus        90 e~e~~~Wi~aL~~a~  104 (160)
                      ....++|+..|+.+.
T Consensus      1717 in~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1717 INLAQQWVECIQSCL 1731 (1732)
T ss_pred             chHHHHHHHHHHHhh
Confidence            999999999999864

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.59  E-value=4.2e-07  Score=65.25  Aligned_cols=73  Identities=19%  Similarity=0.295  Sum_probs=53.7

Q ss_pred             ceEEEEEEeCC-eEEEcccCCCCCCccCccceEEEcCC-eEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy407           19 CHNVYLLLATH-VMVFSPEISGLGFEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   96 (160)
Q Consensus        19 WkkRWFVL~~~-~L~y~~~~yYk~~~e~~~~g~I~L~~-~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~W   96 (160)
                      .|+|||+|++. .|+|      -++.....+|.|+++. .+|+..+..       .|.|.++ .|+|+|.. .+.+..+|
T Consensus        27 ~kkR~liLTd~PrL~Y------vdp~~~~~KGeI~~~~~l~v~~k~~~-------~F~I~tp-~RtY~l~d-~~~~A~~W   91 (104)
T PF14593_consen   27 AKKRQLILTDGPRLFY------VDPKKMVLKGEIPWSKELSVEVKSFK-------TFFIHTP-KRTYYLED-PEGNAQQW   91 (104)
T ss_dssp             EEEEEEEEETTTEEEE------EETTTTEEEEEE--STT-EEEECSSS-------EEEEEET-TEEEEEE--TTS-HHHH
T ss_pred             EEEEEEEEccCCEEEE------EECCCCeECcEEecCCceEEEEccCC-------EEEEECC-CcEEEEEC-CCCCHHHH
Confidence            99999999987 7775      4566677899999986 466665432       7999888 58999988 66668899


Q ss_pred             HHHHHHhHhh
Q psy407           97 MNALSLASIL  106 (160)
Q Consensus        97 i~aL~~a~~~  106 (160)
                      +++|..+...
T Consensus        92 ~~~I~~~~~~  101 (104)
T PF14593_consen   92 VEAIEEVKKQ  101 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987643

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=98.55  E-value=6.2e-07  Score=65.23  Aligned_cols=82  Identities=13%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCe-EEEecCCC--CccCceeeEEEeeCCceEEEEEcC----
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSY-KISPCSSD--DKVFRKFSFKAEHANMRTYYFAAD----   88 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~-~V~~~~~~--~~~~~~~~F~i~~~~~r~~~l~Ae----   88 (160)
                      -+.|||+|++|+..+|.+     |+++...++.-.|+|.+. .|......  ......|+|+|.+. ..+||...+    
T Consensus        13 d~~rKRhYWrLDsK~Itl-----f~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~-~~vY~VG~~~~~~   86 (117)
T cd01239          13 DNRRKKHYWRLDSKAITL-----YQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTT-TNVYFVGGEDYHA   86 (117)
T ss_pred             ccceeeeEEEecCCeEEE-----EEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEec-CEEEEeccccccc
Confidence            378999999999999999     999999999999999885 45543221  11257899999985 478988664    


Q ss_pred             ----------------CHHHHHHHHHHHHHh
Q psy407           89 ----------------TRESMIQWMNALSLA  103 (160)
Q Consensus        89 ----------------se~e~~~Wi~aL~~a  103 (160)
                                      ..+..+-|-.||++|
T Consensus        87 ~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          87 FSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             CCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence                            234557888888875

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=98.42  E-value=8.9e-06  Score=58.82  Aligned_cols=94  Identities=19%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCC----ccCccceEEEcCCeEEEecCCCCc----cCceeeEE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGF----EEEKLLGSILLPSYKISPCSSDDK----VFRKFSFK   74 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~----~e~~~~g~I~L~~~~V~~~~~~~~----~~~~~~F~   74 (160)
                      |.|=|+++....|.  =+.|.|-|-|+.|.|     =|..    ..-..+|.|+|..|.|..+++.+.    ..-+++|+
T Consensus         4 ~~Gel~~~s~~~g~--~q~R~~FLFD~~LI~-----CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafk   76 (109)
T cd01224           4 LQGEATRQKQNKGW--NSSRVLFLFDHQMVL-----CKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLK   76 (109)
T ss_pred             EeeeEEEEecccCC--cccEEEEEecceEEE-----EecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEE
Confidence            55666666643222  236888888888887     5632    124578999999999988765321    12478999


Q ss_pred             EeeCC-ceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           75 AEHAN-MRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        75 i~~~~-~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      |.+.. ...|.|+|.|.++..+||+||..-
T Consensus        77 l~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~e  106 (109)
T cd01224          77 IYSESTDEWYLFSFKSAERKHRWLSAFALE  106 (109)
T ss_pred             EEEcCCCeEEEEEECCHHHHHHHHHHHHHh
Confidence            98754 578999999999999999999763

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.39  E-value=7.1e-07  Score=78.34  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=59.5

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCC-CCcc-CccceEEEcCCe-EEEecCCCCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGL-GFEE-EKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk-~~~e-~~~~g~I~L~~~-~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|....   ....|++|||.+.++.+..    .|+ +++. ......++|... .|.++......+++++|.|.+.+
T Consensus       379 ~~G~l~k~~---~~~~wk~ry~~l~~~~l~~----~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~  451 (478)
T PTZ00267        379 HGGYLYKYS---SDMRWKKRYFYIGNGQLRI----SLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNN  451 (478)
T ss_pred             cceEEeccC---CCcchhhheEEecCCceEE----EeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecC
Confidence            445555442   2336999999999776655    133 2221 222233334221 13333211123678899997766


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           80 MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .+.++|.|+|++++.+||.+|+.|.
T Consensus       452 ~~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        452 GQKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             CcEEEEecCChHHHHHHHHHHHHHh
Confidence            6789999999999999999999985

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.35  E-value=2e-06  Score=62.15  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCcc-----CccceEEEcC--CeEEEecCC-CC-ccCceeeEEEeeCCc-eEEE
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEE-----EKLLGSILLP--SYKISPCSS-DD-KVFRKFSFKAEHANM-RTYY   84 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-----~~~~g~I~L~--~~~V~~~~~-~~-~~~~~~~F~i~~~~~-r~~~   84 (160)
                      +.+.||.||++|++..|+.     |+..--     .+|....+|-  -+++....+ .+ ..++.++|.|.+... .+.+
T Consensus        15 ~~~~wrP~F~aL~~~dl~l-----y~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~vesh~   89 (108)
T cd01258          15 SSQRWRPRFLALKGSEFLF-----FETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQVENHY   89 (108)
T ss_pred             cccccceEEEEEcCCcEEE-----EeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCceeeEE
Confidence            4588999999999999888     876543     4566666766  344322221 11 126789999998776 8999


Q ss_pred             EEcCCHHHHHHHHHHHHH
Q psy407           85 FAADTRESMIQWMNALSL  102 (160)
Q Consensus        85 l~Aese~e~~~Wi~aL~~  102 (160)
                      |+.|+..|+..|..||.+
T Consensus        90 fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          90 LRVETHRDLASWERALVR  107 (108)
T ss_pred             EEecCHHHHHHHHHHHhc
Confidence            999999999999999975

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3751|consensus

Probab=98.34  E-value=1.7e-06  Score=76.63  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccce---EEEcCCeEEEe--cCCC---CccCceeeEEEe
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLG---SILLPSYKISP--CSSD---DKVFRKFSFKAE   76 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g---~I~L~~~~V~~--~~~~---~~~~~~~~F~i~   76 (160)
                      ||| ++|.- |-|.|||.||||+...|||+     -..+..+++.   ..+|.+-.|-.  ...+   .+..-.|+||..
T Consensus       321 GfL-~~K~d-gkKsWKk~yf~LR~SGLYys-----~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~  393 (622)
T KOG3751|consen  321 GFL-YLKED-GKKSWKKHYFVLRRSGLYYS-----TKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPN  393 (622)
T ss_pred             cee-eeccc-ccccceeEEEEEecCcceEc-----cCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeec
Confidence            444 44443 44789999999999999994     3333333332   23444433332  1110   011223455543


Q ss_pred             e---CCceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           77 H---ANMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        77 ~---~~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      -   ...--=+|+||++..+..|+.|||.+..+
T Consensus       394 ~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG  426 (622)
T KOG3751|consen  394 KLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYG  426 (622)
T ss_pred             cccCcccceeeeecccchhHHHHHHHHHHHHHH
Confidence            2   11223489999999999999999998765

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.28  E-value=1.2e-05  Score=57.27  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             EEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy407           23 YLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        23 WFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                      .|.+.| +|.|   +....+..-+....++|.+..|..+.+.+  .-+++|+|.++. +++.++|+|.++..+||..|..
T Consensus        24 ~FLfND-~Lvv---a~~~~~~ky~~~~~~~L~~i~V~ni~D~~--~~kNafki~t~~-~s~i~qaes~~~K~eWl~~le~   96 (100)
T cd01226          24 LFLLND-RLIV---GNINAAGKYVMESTYSLNSVAVVNVKDRE--NAKKVLKLLIFP-ESRIYQCESARIKTEWFEELEQ   96 (100)
T ss_pred             EEEecc-EEEE---EEecccceEEEEEEEehHHeEEEecCCCc--CcCceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHH
Confidence            455555 4444   12223333557788999998887776543  458899999875 6899999999999999999999


Q ss_pred             hH
Q psy407          103 AS  104 (160)
Q Consensus       103 a~  104 (160)
                      |.
T Consensus        97 a~   98 (100)
T cd01226          97 AK   98 (100)
T ss_pred             Hh
Confidence            85

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=98.22  E-value=7.5e-06  Score=59.21  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCC-C--ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLG-F--EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM   93 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~-~--~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~   93 (160)
                      ..=+.||+||-.++|.+     .+- +  ..-...|.++|.+.+|....+.+  +.+++|+|..+-.....+.|.+.+|+
T Consensus        26 qe~~eRyLvLFp~~Lli-----lS~s~r~sGf~yqGkLPL~~i~v~~lEd~e--~~~~aFeI~G~li~~i~v~C~~~~e~   98 (111)
T cd01225          26 EEKRERYLVLFPNVLLM-----LSASPRMSGFIYQGKLPLTGIIVTRLEDTE--ALKNAFEISGPLIERIVVVCNNPQDA   98 (111)
T ss_pred             cccceeEEEEcCceEEE-----EEcCCCccceEEeeeecccccEEechHhcc--CccceEEEeccCcCcEEEEeCCHHHH
Confidence            34567999999999887     443 2  22457799999999988765432  66899999877656799999999999


Q ss_pred             HHHHHHHHHh
Q psy407           94 IQWMNALSLA  103 (160)
Q Consensus        94 ~~Wi~aL~~a  103 (160)
                      .+||..|+.-
T Consensus        99 ~~Wl~hL~~~  108 (111)
T cd01225          99 QEWVELLNAN  108 (111)
T ss_pred             HHHHHHHHhh
Confidence            9999999874

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0932|consensus

Probab=98.21  E-value=1.1e-06  Score=78.59  Aligned_cols=86  Identities=17%  Similarity=0.274  Sum_probs=61.8

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCcc-------CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEc
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEE-------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      |-+.||.-|-||++..||+     -|++--       ......|.+--.-.+++.+  =.+|+|+|++.+.+-|.|.|+|
T Consensus       528 GkRgWk~fya~LkG~vLYl-----qkDey~p~kalse~~lknavsvHHALAt~Atd--Y~KKp~Vf~lrtAdwrv~LFQa  600 (774)
T KOG0932|consen  528 GKRGWKMFYAVLKGMVLYL-----QKDEYKPGKALSESDLKNAVSVHHALATPATD--YSKKPHVFKLRTADWRVFLFQA  600 (774)
T ss_pred             cchhHHHHHHHHhhheEEe-----eccccCcccchhhhhhhhhhhhhhhhcCCCcc--cccCCceEEEEeccceeEEEeC
Confidence            3456999999999999998     443211       1133333332222223322  2478999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhHhhc
Q psy407           88 DTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~~~~  107 (160)
                      .+.+||+.||..|+.++..-
T Consensus       601 ps~eEmqsWi~rIN~vAA~f  620 (774)
T KOG0932|consen  601 PSQEEMQSWIERINLVAAAF  620 (774)
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987554

>PLN02866 phospholipase D

Probab=98.15  E-value=1.3e-05  Score=76.27  Aligned_cols=81  Identities=17%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC-e--------EEEecCC-CCccCceeeEEEeeCCceEEEEEc
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS-Y--------KISPCSS-DDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~-~--------~V~~~~~-~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      .|.||||||++.+|.|     .+++.+.+++..|.+.- .        .|..... .+...-+|.|+|... .|+..|.|
T Consensus       217 ~w~k~w~v~k~~~l~~-----~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~-~r~l~l~~  290 (1068)
T PLN02866        217 NWQKVWAVLKPGFLAL-----LEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG-NRSIRLRT  290 (1068)
T ss_pred             chheeEEEEeccEEEE-----EecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecC-ceEEEEEE
Confidence            6999999999999998     88898888888887641 1        2222211 111234789999874 58999999


Q ss_pred             CCHHHHHHHHHHHHHhH
Q psy407           88 DTRESMIQWMNALSLAS  104 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~  104 (160)
                      .|...+.+|+++|+.+.
T Consensus       291 ~s~~~~~~w~~ai~~~~  307 (1068)
T PLN02866        291 KSSAKVKDWVAAINDAG  307 (1068)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999999996

>KOG0690|consensus

Probab=98.05  E-value=2.5e-05  Score=66.87  Aligned_cols=86  Identities=15%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCCCCceEEEEEEe-CCeEEEcccCCCCCC-ccCccceEEEcCCeEEEecCCC-CccCceeeEEEeeCC---ceEEEEEc
Q psy407           14 MASTLCHNVYLLLA-THVMVFSPEISGLGF-EEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHAN---MRTYYFAA   87 (160)
Q Consensus        14 ~~~k~WkkRWFVL~-~~~L~y~~~~yYk~~-~e~~~~g~I~L~~~~V~~~~~~-~~~~~~~~F~i~~~~---~r~~~l~A   87 (160)
                      .-+|.|+.|||+|. ++.|.-     |+.. ++..+ ---+|.++.|..+..- ...-|++.|-|..-.   --.-.|.+
T Consensus        26 E~IknWRpRYF~l~~DG~~~G-----yr~kP~~~~~-~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~v   99 (516)
T KOG0690|consen   26 EHIKNWRPRYFLLFNDGTLLG-----YRSKPKEVQP-TPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTTVIERTFYV   99 (516)
T ss_pred             hhhhcccceEEEEeeCCceEe-----eccCCccCCC-CcccccchhhhhhhhhhccCCCCceEEEEeeeeeeeeeeeeec
Confidence            34688999999998 566666     6643 33221 1245555555443320 001467788775321   12235679


Q ss_pred             CCHHHHHHHHHHHHHhHh
Q psy407           88 DTRESMIQWMNALSLASI  105 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~~  105 (160)
                      ++.+++++|+.||+..+.
T Consensus       100 es~~eRq~W~~AIq~vsn  117 (516)
T KOG0690|consen  100 ESAEERQEWIEAIQAVSN  117 (516)
T ss_pred             CCHHHHHHHHHHHHHHhh
Confidence            999999999999999874

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=97.99  E-value=0.00021  Score=52.45  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             EEEEecCC---CCCCceEEEEEEeC--CeEEEcccCCCCC-CccC----ccceEEEcCCeE-EEecCCCCccC----cee
Q psy407            7 LIILNDNM---ASTLCHNVYLLLAT--HVMVFSPEISGLG-FEEE----KLLGSILLPSYK-ISPCSSDDKVF----RKF   71 (160)
Q Consensus         7 ~~~~~~~~---~~k~WkkRWFVL~~--~~L~y~~~~yYk~-~~e~----~~~g~I~L~~~~-V~~~~~~~~~~----~~~   71 (160)
                      |.....+.   +.+..++|||-|..  .+|++     ... +...    .-.+.|.|.+.. |.+-.......    -.+
T Consensus        15 l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~W-----s~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~   89 (123)
T PF12814_consen   15 LYKYTRKGRSGISEKPHRRYFWVDPYTRTLYW-----SSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNK   89 (123)
T ss_pred             EEEEcccccCccCCCcEEEEEEEeCCCCEEEe-----cCCCCCccccccccccceEEeeeEEecCCCCCCccccccccce
Confidence            44444444   34589999999996  58887     442 2111    123567777744 22211111111    246


Q ss_pred             eEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           72 SFKAEHANMRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        72 ~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      +|.|.++ .|+.-|.|+|.++.+-|+++|+.-
T Consensus        90 si~i~t~-~R~L~l~a~s~~~~~~W~~aL~~L  120 (123)
T PF12814_consen   90 SIIIVTP-DRSLDLTAPSRERHEIWFNALRYL  120 (123)
T ss_pred             EEEEEcC-CeEEEEEeCCHHHHHHHHHHHHHH
Confidence            7777765 589999999999999999999864

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=97.96  E-value=6.2e-05  Score=52.53  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=58.6

Q ss_pred             EecCCCCCCceEEEEEEeCC-eEEEcccCCCCCCccCccceEEEcCC-e-EEEecCCCCccCceeeEEEeeCCceEEEEE
Q psy407           10 LNDNMASTLCHNVYLLLATH-VMVFSPEISGLGFEEEKLLGSILLPS-Y-KISPCSSDDKVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus        10 ~~~~~~~k~WkkRWFVL~~~-~L~y~~~~yYk~~~e~~~~g~I~L~~-~-~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      ++.+.|. .+|+|=++|.+. .|+      |-|+.....+|.|+++. . .|+..+.       ..|.|.+|+ |+|+|.
T Consensus         7 v~Kr~gl-f~kkR~LiLTd~PrL~------yvdp~~~~~KgeIp~s~~~l~v~~~~~-------~~F~I~Tp~-rty~le   71 (89)
T cd01262           7 VKKRKGL-FAKKRQLILTNGPRLI------YVDPVKKVVKGEIPWSDVELRVEVKNS-------SHFFVHTPN-KVYSFE   71 (89)
T ss_pred             eeehhcc-ccceeeEEEecCceEE------EEcCCcCeEEeEecccccceEEEEecC-------ccEEEECCC-ceEEEE
Confidence            3445555 789999999975 555      45777888999999977 2 3444332       379998775 899994


Q ss_pred             cCCHHHHHHHHHHHHHhH
Q psy407           87 ADTRESMIQWMNALSLAS  104 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~  104 (160)
                       +-+....+|+.+|..+.
T Consensus        72 -D~~~~a~~W~~~I~~~~   88 (89)
T cd01262          72 -DPKGRASQWKKAIEDLQ   88 (89)
T ss_pred             -CCCCCHHHHHHHHHHHh
Confidence             66789999999998763

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117|consensus

Probab=97.93  E-value=3e-05  Score=72.33  Aligned_cols=97  Identities=13%  Similarity=0.142  Sum_probs=74.0

Q ss_pred             ccceEEEEecCCC--------CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecC-CCCc--cCcee
Q psy407            3 HVCFLIILNDNMA--------STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCS-SDDK--VFRKF   71 (160)
Q Consensus         3 ~~~~~~~~~~~~~--------~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~-~~~~--~~~~~   71 (160)
                      |.+||-+--..+.        -..-.++||||-++.|+|     |.++...+|.|.|++....--.+. +++.  ..-.|
T Consensus       494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~-----fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f  568 (1186)
T KOG1117|consen  494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSY-----FENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIF  568 (1186)
T ss_pred             ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhh-----hhhcCCCCCCceeeccceEEEeecCCCCCCCcCcee
Confidence            3466665544432        123778999999999999     999999999999999884322221 2121  24578


Q ss_pred             eEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           72 SFKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        72 ~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .|+|..+..|.|.|.+++.+++..|..++.++-
T Consensus       569 ~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf  601 (1186)
T KOG1117|consen  569 IFEIYLPGERVFLFGLETADALRKWTEAIAKHF  601 (1186)
T ss_pred             EEEEeecccceEEeecccHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999998864

>KOG1739|consensus

Probab=97.93  E-value=2.6e-05  Score=68.78  Aligned_cols=82  Identities=20%  Similarity=0.252  Sum_probs=66.0

Q ss_pred             CCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHH
Q psy407           14 MASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRE   91 (160)
Q Consensus        14 ~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~   91 (160)
                      +-+..|+-|||||+++.|.|     |+++.+  .-++|.|.|....|..-.. |.    ..|.|... ...+||.|++..
T Consensus        35 nyi~gwqdRyv~lk~g~Lsy-----ykse~E~~hGcRgsi~l~ka~i~ahEf-De----~rfdIsvn-~nv~~lra~~~~  103 (611)
T KOG1739|consen   35 NYIHGWQDRYVVLKNGALSY-----YKSEDETEHGCRGSICLSKAVITAHEF-DE----CRFDISVN-DNVWYLRAQDPD  103 (611)
T ss_pred             cccccccceEEEEcccchhh-----hhhhhhhhcccceeeEeccCCcccccc-hh----heeeeEec-cceeeehhcCcH
Confidence            44568999999999999999     998766  4599999998877766543 22    26888765 457999999999


Q ss_pred             HHHHHHHHHHHhHhh
Q psy407           92 SMIQWMNALSLASIL  106 (160)
Q Consensus        92 e~~~Wi~aL~~a~~~  106 (160)
                      ..+.|+.+|..-...
T Consensus       104 hr~~w~d~L~wmk~e  118 (611)
T KOG1739|consen  104 HRQQWIDALEWMKTE  118 (611)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999986543

>KOG4424|consensus

Probab=97.91  E-value=8.4e-06  Score=72.99  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=78.1

Q ss_pred             cceEEEEecCCCCCCceEEEEEEe---CCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLA---THVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM   80 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~---~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~   80 (160)
                      +|+++.+.+. +.+.|++-|++.-   +.+++.     |..+++......|+|.||.|.+-.........++|++.. ..
T Consensus       499 ~~s~l~~~~~-~~~~g~~a~~~vP~~d~~~~~~-----Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~-s~  571 (623)
T KOG4424|consen  499 ICSHLKYMEA-AGKTGILAWSVVPKSDPLVDYS-----YGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQ-SH  571 (623)
T ss_pred             ehhhHHHHhh-cCccceeeeeeccCCCCccccc-----cCCccccccccccccCccccCCCcccccchhcchhhhhh-hc
Confidence            5666666666 5578999999886   348887     999999999999999999987543332234566788865 45


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           81 RTYYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      ..++|+|++++-.++|+..|..|..+...
T Consensus       572 ~~~~~~a~~~q~qq~wl~~l~~A~~~d~~  600 (623)
T KOG4424|consen  572 LSWHLAADDEQLQQRWLEVLLLAVSGDLK  600 (623)
T ss_pred             ceeeeccCCHHHHHHHHHHHHhhhccccc
Confidence            68999999999999999999999866554

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=97.80  E-value=0.00016  Score=66.57  Aligned_cols=98  Identities=7%  Similarity=0.162  Sum_probs=69.7

Q ss_pred             ceEEEEec-CCCCCCceEEEEEEeCCeEEEcccCCCCCCc--cCccceEEEcCC-eEEEecCCCCc-cCceeeEEEeeC-
Q psy407            5 CFLIILND-NMASTLCHNVYLLLATHVMVFSPEISGLGFE--EEKLLGSILLPS-YKISPCSSDDK-VFRKFSFKAEHA-   78 (160)
Q Consensus         5 ~~~~~~~~-~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~--e~~~~g~I~L~~-~~V~~~~~~~~-~~~~~~F~i~~~-   78 (160)
                      |-+.-+.. +-|...-++|||||.++.|.|     ||.+-  ...|+-+..|.+ |.|+..+-+.- -+--|+|.|... 
T Consensus         8 GW~y~~g~~kig~~~~~~Ry~vl~~~~~~~-----yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~   82 (719)
T PLN00188          8 GWMVRYGRRKIGRSYIHMRYFVLESRLLAY-----YKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   82 (719)
T ss_pred             eEEEEEcccccccccceeEEEEEecchhhh-----cccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCC
Confidence            44445544 344456899999999999999     98632  245666666655 67777654211 123578888753 


Q ss_pred             -CceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           79 -NMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        79 -~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                       ..+..-|.|-|.+|..+||.||+.|+.+.
T Consensus        83 ~~~~~~~~~a~~~eea~~W~~a~~~a~~q~  112 (719)
T PLN00188         83 EKYHRITMAAFNIQEALIWKEKIESVIDQH  112 (719)
T ss_pred             CccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence             34678999999999999999999998643

>KOG3543|consensus

Probab=97.79  E-value=4.6e-06  Score=75.74  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             CCccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCcc-CceeeEEEeeCC
Q psy407            1 MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKV-FRKFSFKAEHAN   79 (160)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~-~~~~~F~i~~~~   79 (160)
                      |-|.|.|-++.+ +.+|.||||||||-.-.-|-+-.+.|+..+ ..|...|.|.|++|.-.++.+.. +.++-|...- .
T Consensus       464 mkhsgylyaig~-nvwkrwkkrffvlvqvsqytfamcsyrekk-aepqel~qldgytvdytdp~pglqgg~~ffnavk-e  540 (1218)
T KOG3543|consen  464 MKHSGYLYAIGR-NVWKRWKKRFFVLVQVSQYTFAMCSYREKK-AEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVK-E  540 (1218)
T ss_pred             cccceeehhhhh-HHHHHhHhhEEEEEEhhhhhhHhhhhhhcc-cChHHHhhccCeeeccCCCCCccccchHHHHHhc-c
Confidence            457777776655 467899999999975433322334466443 46889999999999876553322 3455565543 3


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      ..+..|+.++++++.-|+.|+-.|.-+
T Consensus       541 gdtvifasddeqdr~lwvqamyratgq  567 (1218)
T KOG3543|consen  541 GDTVIFASDDEQDRHLWVQAMYRATGQ  567 (1218)
T ss_pred             CceEEeccCchhhhhHHHHHHHHhhCC
Confidence            468999999999999999999999743

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.77  E-value=0.00017  Score=52.71  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             ceEEEEEEeCCeEEEcccCCCCCCcc------CccceEEEcCCeEEEecCCCCcc----CceeeEEEeeCC-ceEEEEEc
Q psy407           19 CHNVYLLLATHVMVFSPEISGLGFEE------EKLLGSILLPSYKISPCSSDDKV----FRKFSFKAEHAN-MRTYYFAA   87 (160)
Q Consensus        19 WkkRWFVL~~~~L~y~~~~yYk~~~e------~~~~g~I~L~~~~V~~~~~~~~~----~~~~~F~i~~~~-~r~~~l~A   87 (160)
                      =+.|+.-|-+..|..     -|...+      -..+..+.|..+.|+.....|+.    .-+|+|.|.+.+ ...|.|.|
T Consensus        20 ~k~RyiFLFDk~lI~-----CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~   94 (116)
T cd01223          20 TKLRYIFLFDKAVIV-----CKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYF   94 (116)
T ss_pred             CceeEEEEecceEEE-----EEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEe
Confidence            457886666665544     343222      34667788889888875432322    467899998754 36899999


Q ss_pred             CCHHHHHHHHHHHHHhH
Q psy407           88 DTRESMIQWMNALSLAS  104 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~  104 (160)
                      -|+++...||.+|..|.
T Consensus        95 Ktee~K~kWm~al~~a~  111 (116)
T cd01223          95 KTEHLRKKWLKALEMAM  111 (116)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999999985

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0248|consensus

Probab=97.76  E-value=1.3e-05  Score=73.23  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             CCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCC-eEEEecCCCCccCceeeEEEeeCCceEEEEEcCCH
Q psy407           14 MASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTR   90 (160)
Q Consensus        14 ~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~-~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese   90 (160)
                      .-.|.|+||||||+.+.+.|     |+.+.+  ..+.+.|.++. |.+...      .-.+.|.++.. ..+|+|-++++
T Consensus       260 s~~k~lkrr~~v~k~gqi~~-----y~~~~~~~~~p~s~~d~~s~~~~~~~------~~s~~fqli~~-t~~~~~~~~s~  327 (936)
T KOG0248|consen  260 SRIKSLKRRYVVFKNGQISF-----YRKHNNRDEEPASKIDIRSVTKLEQQ------GAAYAFQLITS-TDKMNFMTESE  327 (936)
T ss_pred             HHHHHHHhHheeeccceEEE-----EEcCCCccccccCcccccccceeecc------chhHHhhhhhh-ceeEEEeccCh
Confidence            33567999999999999988     876554  67999999966 443333      22457888754 57899999999


Q ss_pred             HHHHHHHHHHHHhHhhcc
Q psy407           91 ESMIQWMNALSLASILQN  108 (160)
Q Consensus        91 ~e~~~Wi~aL~~a~~~~~  108 (160)
                      --..+|++.|..+++.+.
T Consensus       328 ~lt~dw~~iL~~~iKv~~  345 (936)
T KOG0248|consen  328 RTTHDWVTILSAAIKATT  345 (936)
T ss_pred             hhhhhhHHHHHHHHHHHh
Confidence            999999999999988753

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=97.75  E-value=0.00032  Score=49.69  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             eEEEEEEeCCeEEEcccCCCCCCc-cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC--ceEEEEEcCCHHHHHHH
Q psy407           20 HNVYLLLATHVMVFSPEISGLGFE-EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRESMIQW   96 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~~~-e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~--~r~~~l~Aese~e~~~W   96 (160)
                      +.|++-|-+..|.|     -|-.. .-..+..|.+.+..|..-.+.|    +++|.|.+.+  .+.|.|+|.|.++.+.|
T Consensus        17 ~eR~vFLFe~~ll~-----~K~~~~~y~~K~~i~~~~l~i~e~~~~d----~~~F~v~~~~~p~~~~~l~A~s~e~K~~W   87 (97)
T cd01222          17 KPRLLFLFQTMLLI-----AKPRGDKYQFKAYIPCKNLMLVEHLPGE----PLCFRVIPFDDPKGALQLTARNREEKRIW   87 (97)
T ss_pred             CceEEEEecccEEE-----EEecCCeeEEEEEEEecceEEecCCCCC----CcEEEEEecCCCceEEEEEecCHHHHHHH
Confidence            35777777776665     33222 2457788999998876643332    5789997642  25899999999999999


Q ss_pred             HHHHHHhH
Q psy407           97 MNALSLAS  104 (160)
Q Consensus        97 i~aL~~a~  104 (160)
                      |++|+.+.
T Consensus        88 ~~~i~~~i   95 (97)
T cd01222          88 TQQLKRAM   95 (97)
T ss_pred             HHHHHHHh
Confidence            99999875

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.74  E-value=0.00014  Score=51.88  Aligned_cols=83  Identities=13%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             CCCCCceEEEEEEeC----CeEEEcccCCCCC--CccCccceEEEcCCeE-EEecC-CCCccCceeeEEEeeCCceEEEE
Q psy407           14 MASTLCHNVYLLLAT----HVMVFSPEISGLG--FEEEKLLGSILLPSYK-ISPCS-SDDKVFRKFSFKAEHANMRTYYF   85 (160)
Q Consensus        14 ~~~k~WkkRWFVL~~----~~L~y~~~~yYk~--~~e~~~~g~I~L~~~~-V~~~~-~~~~~~~~~~F~i~~~~~r~~~l   85 (160)
                      .|...|+|.=.+|+.    ..|.+     |.-  ++..+|+-.|....+. |.... .+- ..+.+.|.|...+...|+|
T Consensus        16 ~~~~~WqkcRl~L~~~~gg~~le~-----~~~~pPKssrpk~~v~C~~I~EvR~tt~LEm-PD~~nTFvLK~~~~~eyI~   89 (107)
T cd01231          16 DSGARWQRGRLVLRKAVGGYMLEF-----YLPLPPKSSKPKLQVACSSISEVRECTRLEM-PDNLYTFVLKVDDNTDIIF   89 (107)
T ss_pred             CCccccceeeEEEEecCCCceEEE-----EccCCCCCCCCccccchhhhhhhhhcccccc-cCcccEEEEEecCCceEEE
Confidence            455579999998873    34444     443  6777888777654421 22211 111 1456788887766779999


Q ss_pred             EcCCHHHHHHHHHHHHH
Q psy407           86 AADTRESMIQWMNALSL  102 (160)
Q Consensus        86 ~Aese~e~~~Wi~aL~~  102 (160)
                      -|.++++|+.||+.|+.
T Consensus        90 Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          90 EVGDEQQLNSWLAELRY  106 (107)
T ss_pred             EcCCHHHHHHHHHHHhc
Confidence            99999999999999985

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.71  E-value=0.00048  Score=51.02  Aligned_cols=93  Identities=16%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             ceEEEEecCCCCC------CceEEEEEEeCCeEEEcccCCCCCCccCc--cceEEEcCCeEEEecCCCCc--------cC
Q psy407            5 CFLIILNDNMAST------LCHNVYLLLATHVMVFSPEISGLGFEEEK--LLGSILLPSYKISPCSSDDK--------VF   68 (160)
Q Consensus         5 ~~~~~~~~~~~~k------~WkkRWFVL~~~~L~y~~~~yYk~~~e~~--~~g~I~L~~~~V~~~~~~~~--------~~   68 (160)
                      |=|+.+.......      .-+.+|+.|-..+|.|     -|...+.+  .....+...+.|+.+.....        ..
T Consensus         7 GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~-----tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~   81 (125)
T cd01221           7 GELTQLEERGSSNILRKKLKARTIYLFLFNDLLLI-----TKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVG   81 (125)
T ss_pred             eeEEEEeccCCcchhcccccCCcEEEEEecceEEE-----EEecCCCeEEEEeeccccceEEeecccccccccccccccC
Confidence            4566665543332      2456788888877776     55433221  21222334444554432111        13


Q ss_pred             ceeeEEEe-----eCCceEEEEEcCCHHHHHHHHHHHHH
Q psy407           69 RKFSFKAE-----HANMRTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        69 ~~~~F~i~-----~~~~r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                      .++.|.|+     ....+++.|+|+|+.|+.+||.||.-
T Consensus        82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~~  120 (125)
T cd01221          82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALAP  120 (125)
T ss_pred             CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcCC
Confidence            57889985     23457899999999999999999853

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.59  E-value=0.00015  Score=64.31  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=34.3

Q ss_pred             CceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           68 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        68 ~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +.+|+|.+...+.+.++|.|.+++++..||.+|+++.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (496)
T PTZ00283        453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVL  489 (496)
T ss_pred             CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhc
Confidence            5799999988778999999999999999999999985

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.52  E-value=0.00038  Score=49.09  Aligned_cols=82  Identities=17%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCC----C-ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLG----F-EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~----~-~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      |||+.+-++    .=|.|-|-|-+..|.|   ..|+.    . ..-+....|+|.+..+..+          .|++.+..
T Consensus         7 g~lvel~~~----~rK~R~~FLFnDlLvc---~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~----------~~~~~~~~   69 (96)
T cd01228           7 SFLVELVEG----SRKLRHLFLFTDVLLC---AKLKKTSRGKHQQYDCKWYIPLADLSFPSE----------PFRIHNKN   69 (96)
T ss_pred             ceeeeehhC----CCcceEEEeeccEEEE---EEeeeccCccccccceeEEEEhHHheecch----------hhhccccC
Confidence            677766643    3355666666665655   23431    1 2245677899999776555          25665555


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      .++|.|.|.|..|..+||.+|..-
T Consensus        70 ~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          70 GKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             CceEEEEecCHHHHHHHHHHHHHH
Confidence            789999999999999999999763

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15406 PH_6: Pleckstrin homology domain

Probab=97.40  E-value=0.00051  Score=49.58  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             CCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy407           39 GLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        39 Yk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                      -|.+....|-|.|+|.+.+  .+..+  ...+|.|++  .+ ....|.|.|..|+..||.+|..
T Consensus        55 ~K~~dka~P~GiinLadas--e~~~~--g~~kF~f~~--~G-~khtF~A~s~aERD~Wv~~lk~  111 (112)
T PF15406_consen   55 SKAEDKASPSGIINLADAS--EPEKD--GSNKFHFKI--KG-HKHTFEAASAAERDNWVAQLKA  111 (112)
T ss_pred             eccccccCCcceEehhhcc--ccccC--CCceEEEEe--CC-ceeeeecCCHHHhccHHHHhhc
Confidence            4433346799999998833  32221  145777877  23 5689999999999999999863

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=97.34  E-value=0.0004  Score=50.22  Aligned_cols=82  Identities=11%  Similarity=0.037  Sum_probs=58.8

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      ..|++|||-|-.+-|-+     |....+ .....|.+...  ..+.. ....+...|+.|...+.+.|+|.++++-+..+
T Consensus        18 s~WQ~Ry~~LfPNRLE~-----~~~~~~-~~~eLi~M~~i--~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~q   89 (116)
T cd01240          18 SQWQTRYFKLYPNRLEL-----YGESEA-NKPELITMDQI--EDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQ   89 (116)
T ss_pred             HHHHHHHheeCcceeee-----cccccc-cCCcEEEeehh--hhcchhheeeccCceEEEEEcCCceEEEecCCcHHHHH
Confidence            35999999999999997     644333 34455665552  22221 11124556888887777889999999999999


Q ss_pred             HHHHHHHhHhh
Q psy407           96 WMNALSLASIL  106 (160)
Q Consensus        96 Wi~aL~~a~~~  106 (160)
                      |...|+.|-+.
T Consensus        90 W~~elr~a~r~  100 (116)
T cd01240          90 WKKELRDAHRE  100 (116)
T ss_pred             HHHHHHHHHHH
Confidence            99999998643

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>KOG1738|consensus

Probab=97.27  E-value=2.6e-05  Score=70.49  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             CccceEEEEecCCC-CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC
Q psy407            2 DHVCFLIILNDNMA-STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS   63 (160)
Q Consensus         2 ~~~~~~~~~~~~~~-~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~   63 (160)
                      |.+|.|+-++++.. ...|+|-||||++..|+.     |.+++...+.++|.|.+++|..+.+
T Consensus       563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~-----y~n~~~~~~e~~i~l~~~~i~~a~e  620 (638)
T KOG1738|consen  563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLN-----YRNHRVRAAESVIKLPLFTISVAEE  620 (638)
T ss_pred             hhhccchhhccchHHHHHhhhheeeecCchhhh-----hhhhhhhchhheeeccchhhhhHHH
Confidence            67788888888733 335999999999999999     9999999999999999999988755

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=97.12  E-value=0.011  Score=43.14  Aligned_cols=93  Identities=8%  Similarity=0.144  Sum_probs=56.2

Q ss_pred             ceEEEEecCCC-CCCceEEEEEEeCCeEEEcccCCCCCCcc--------CccceEEEcCCeEEEecCCCCccCceeeEEE
Q psy407            5 CFLIILNDNMA-STLCHNVYLLLATHVMVFSPEISGLGFEE--------EKLLGSILLPSYKISPCSSDDKVFRKFSFKA   75 (160)
Q Consensus         5 ~~~~~~~~~~~-~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i   75 (160)
                      +-++....+.+ .+.=+.|-+-|-+..|.|     -|-..+        -..+..|.|....++.....|+  .+|.+.+
T Consensus         9 ~~f~v~~~~~~~~~K~~eR~vFLFe~~lvf-----sk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~--~kF~i~~   81 (114)
T cd01232           9 DTFQVWDPKAGLIQKGRERRVFLFEQSIIF-----AKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDP--CRFALWS   81 (114)
T ss_pred             ccEEEEeCCccccCCCceeEEEEeeceEEE-----EEEeccCCCCCceeEEEecceeeeeeEeEEccCCCC--ceEEEEe
Confidence            34455555432 223344555555555555     221111        2245788898888877544332  3444444


Q ss_pred             eeCC--ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           76 EHAN--MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        76 ~~~~--~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ..+.  ..+|.|+|.|.++.+.||..|+.+.
T Consensus        82 ~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          82 GDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             CCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            4332  3689999999999999999999863

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4807|consensus

Probab=97.01  E-value=4.3e-06  Score=72.21  Aligned_cols=78  Identities=19%  Similarity=0.317  Sum_probs=64.8

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      -.|++.||||.+..+.|     |.++..   ....|.|.|.+|+ |..+.    ..+.|.|.|-+.+ ..|.|.|.+.--
T Consensus        33 ~~~~k~~~~~~~~~~~~-----~~d~~A~~~~~L~~~~~LR~C~~v~e~a----~q~nY~~~i~~~~-~~~tL~~~~s~I  102 (593)
T KOG4807|consen   33 SQWKKHWFVLTDSSLKY-----YRDSTAEEADELDGEIDLRSCTDVTEYA----VQRNYGFQIHTKD-AVYTLSAMTSGI  102 (593)
T ss_pred             HHHHHHHHHHhHHHHHH-----HHHHHHHhcccCCccccHHHHHHHHHHH----HHhccceeecccc-hhhhhHHHHHHH
Confidence            36999999999999998     887654   5688999999997 44443    2788999997654 689999999999


Q ss_pred             HHHHHHHHHHhH
Q psy407           93 MIQWMNALSLAS  104 (160)
Q Consensus        93 ~~~Wi~aL~~a~  104 (160)
                      +..|+.|+++..
T Consensus       103 r~~~~~A~~kT~  114 (593)
T KOG4807|consen  103 RRNWIEALRKTV  114 (593)
T ss_pred             HHHHHHHHHhcc
Confidence            999999999754

>KOG1117|consensus

Probab=96.97  E-value=0.0028  Score=59.63  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccC--ceeeEEEeeCCceEEEEEcCCHHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVF--RKFSFKAEHANMRTYYFAADTRESMI   94 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~--~~~~F~i~~~~~r~~~l~Aese~e~~   94 (160)
                      ..++-|||+|+++||..     ||+.+..+....-+|.+.++-.. .+.+.+  ..+.|.++... ..+||+|++..++.
T Consensus      1049 ~~fqdryfilng~~l~l-----yke~KssKhek~wpl~s~k~Y~G-vkkklKpPt~wg~T~i~ek-hh~~l~cd~s~~~~ 1121 (1186)
T KOG1117|consen 1049 NKFQDRYFILNGGCLFL-----YKEVKSSKHEKEWPLSSMKVYLG-VKKKLKPPTSWGFTAISEK-HHWYLCCDSSSEQT 1121 (1186)
T ss_pred             CccceEEEEecCcEEEE-----eehhhccccccccccccceEEec-cccccCCCCccceeeeeec-ceEEEecCCccccc
Confidence            46999999999999999     99988877677788888776542 221222  23577777655 46999999999999


Q ss_pred             HHHHHHHHhH
Q psy407           95 QWMNALSLAS  104 (160)
Q Consensus        95 ~Wi~aL~~a~  104 (160)
                      +|+..+-.|-
T Consensus      1122 ewfts~fkaq 1131 (1186)
T KOG1117|consen 1122 EWFTSIFKAQ 1131 (1186)
T ss_pred             hhhhhhhhhh
Confidence            9999998874

>KOG3723|consensus

Probab=96.87  E-value=0.00039  Score=62.85  Aligned_cols=85  Identities=16%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCcc-CccceEEEcCCeE-EEecCCCC-ccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEE-EKLLGSILLPSYK-ISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-~~~~g~I~L~~~~-V~~~~~~~-~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      +|.|+-|||.|.+-.|.|     -|.... ..-.-.|+|.... |..+.... ..+-+-.|+|-+.+ ++|+|.|.+++.
T Consensus       751 ~kRW~TrYFTLSgA~L~~-----~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD-~T~ILKaKDeKN  824 (851)
T KOG3723|consen  751 IKRWKTRYFTLSGAQLLF-----QKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKN  824 (851)
T ss_pred             hhhhccceEEecchhhhc-----ccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC-ceEEeecccccC
Confidence            457999999999999997     343221 1222568887643 44343110 00123379998876 689999999999


Q ss_pred             HHHHHHHHHHhHhh
Q psy407           93 MIQWMNALSLASIL  106 (160)
Q Consensus        93 ~~~Wi~aL~~a~~~  106 (160)
                      .++|+.-|.-|...
T Consensus       825 AEEWlqCL~IavAH  838 (851)
T KOG3723|consen  825 AEEWLQCLNIAVAH  838 (851)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887643

>KOG2070|consensus

Probab=96.56  E-value=0.01  Score=53.01  Aligned_cols=77  Identities=13%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             ceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           19 CHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        19 WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      =+.|||+|-.+.|.+     +.-...   .--.|.+++.|+.|....+.+  ..+..|.|...--......|+++.+.++
T Consensus       325 ~~dRy~~LF~~~llf-----lsvs~rMs~fIyegKlp~tG~iV~klEdte--~~~nafeis~~ti~rIv~~c~~~~~l~~  397 (661)
T KOG2070|consen  325 EKDRYLLLFPNVLLF-----LSVSPRMSGFIYEGKLPTTGMIVTKLEDTE--NHRNAFEISGSTIERIVVSCNNQQDLQE  397 (661)
T ss_pred             hhhheeeeccceeee-----eEeccccchhhhccccccceeEEeehhhhh--cccccccccccchhheeeccCChHHHHH
Confidence            458999999887776     443222   234578999999988875432  4566899976544458899999999999


Q ss_pred             HHHHHHH
Q psy407           96 WMNALSL  102 (160)
Q Consensus        96 Wi~aL~~  102 (160)
                      |+.+|..
T Consensus       398 wve~ln~  404 (661)
T KOG2070|consen  398 WVEHLNK  404 (661)
T ss_pred             HHHHhhh
Confidence            9999996

>KOG1737|consensus

Probab=96.53  E-value=0.0015  Score=61.15  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=61.6

Q ss_pred             EEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEE
Q psy407            9 ILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus         9 ~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      .++-..-.+.|.+|||+|.++.|.|     |++...  ..+.|.|++....|.....       ..+.+...+.+.|++.
T Consensus        83 l~k~~n~~~~~~~r~f~l~~g~ls~-----~~~~~~~~~~~~~~~~~~~a~i~~~~~-------~~~~~~~~~~q~~~~~  150 (799)
T KOG1737|consen   83 LLKWRNYSKGPSSRWFVLSGGLLSY-----YFDNSFSKTTCGGGINLVTAWIQNGER-------MDICSVDGSCQIYLVE  150 (799)
T ss_pred             eeccccccCCcccceEEecCcceee-----eccCCccccCCCCcccccccccccCCC-------cccchhhcccchhhhh
Confidence            3445556689999999999888888     665444  6788999987655543322       1233333336789999


Q ss_pred             cCCHHHHHHHHHHHHHhH
Q psy407           87 ADTRESMIQWMNALSLAS  104 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~  104 (160)
                      +-++.+.+.|+.+++.+.
T Consensus       151 ~~~~~~~~~~~~~~~l~~  168 (799)
T KOG1737|consen  151 LSKKLQRQGWLHALELAP  168 (799)
T ss_pred             hhHHHhhcchhhhhhhcc
Confidence            999999999999999984

>KOG1451|consensus

Probab=96.39  E-value=0.0081  Score=54.65  Aligned_cols=95  Identities=14%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCC--eEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-ce
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATH--VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MR   81 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~--~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-~r   81 (160)
                      |.|.+-++..-.+.|.|.|||....  .+..-|- --|......+..++.|..|.=...+   .+.++|||.|...+ .-
T Consensus       269 GYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~-~qk~g~k~g~~~~~~lKsC~RRktd---SIdKRFCFDve~~erpg  344 (812)
T KOG1451|consen  269 GYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPA-NQKTGTKMGQTATFKLKSCSRRKTD---SIDKRFCFDVEVEERPG  344 (812)
T ss_pred             eeeeehhhhhccchhhhheeEeecccceEEEeec-ccCCCCcCCCcceEEehhhccCccc---ccccceeeeeeecccCC
Confidence            4455555555566899999999853  2222000 0111112335556788888754443   35789999998642 34


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHh
Q psy407           82 TYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      +..++|-+|+++..||.|+.-+
T Consensus       345 viTmQALSE~drrlWmeAMDG~  366 (812)
T KOG1451|consen  345 VITMQALSEKDRRLWMEAMDGA  366 (812)
T ss_pred             eeehHhhhhhHHHHHHHHhcCC
Confidence            7899999999999999999876

>KOG4424|consensus

Probab=95.60  E-value=0.036  Score=50.24  Aligned_cols=91  Identities=12%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc-----cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE-----EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~-----e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      |-+..+.-+  ...-..||++|-...|.|     -+...     .-+....+.+.++.|.....   ....+.|.+..+ 
T Consensus       276 G~l~Kis~k--~~~~qeRylfLFNd~~ly-----c~~r~~~~~~k~~~r~~~s~~~~~v~~~~~---~~~~~tF~~~G~-  344 (623)
T KOG4424|consen  276 GQLQKISAK--NGTTQERYLFLFNDILLY-----CKPRKRLPGSKYEVRARCSISHMQVQEDDN---EELPHTFILTGK-  344 (623)
T ss_pred             cceeeeecc--CCCcceeEEEEehhHHHh-----hhhhhhcccceeccceeeccCcchhccccc---ccCCceEEEecc-
Confidence            455566555  346789998888765554     22211     02233445555655443322   256889999754 


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .|...|.|-|+++..+||++|+.|+-.
T Consensus       345 ~r~vel~a~t~~ek~eWv~~I~~~Id~  371 (623)
T KOG4424|consen  345 KRGVELQARTEQEKKEWVQAIQDAIDK  371 (623)
T ss_pred             cceEEeecCchhhHHHHHHHHHHHHHH
Confidence            589999999999999999999998754

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=95.50  E-value=0.32  Score=36.35  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             eEEEEEEeCCeEEEcccCCCCCCc---------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeC-CceEEEEEcCC
Q psy407           20 HNVYLLLATHVMVFSPEISGLGFE---------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-NMRTYYFAADT   89 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~~~---------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~-~~r~~~l~Aes   89 (160)
                      +.|.+-|-+..+.+     -|-..         .-..+..|.|....++.-...|    ...|.|.+. ....|.|.|.|
T Consensus        30 ~eRhVFLFE~~viF-----~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd----~~kFeiw~~~~~~~yilqA~t  100 (133)
T cd01227          30 MQRHIFLHEKAVLF-----CKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGD----TKKFEIWYNAREEVYILQAPT  100 (133)
T ss_pred             ceeEEEEecceEEE-----EEEeccCCCCCcceeEEEeeeEEeecccccccCCCC----ccEEEEEeCCCCcEEEEEcCC
Confidence            46777777766665     22211         1234567777776665532222    235666542 24689999999


Q ss_pred             HHHHHHHHHHHHHhHhhc
Q psy407           90 RESMIQWMNALSLASILQ  107 (160)
Q Consensus        90 e~e~~~Wi~aL~~a~~~~  107 (160)
                      .+..+.||..|+.....|
T Consensus       101 ~e~K~~Wv~~I~~iL~~Q  118 (133)
T cd01227         101 PEIKAAWVNEIRKVLTSQ  118 (133)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999977655

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=95.46  E-value=0.15  Score=36.47  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=48.2

Q ss_pred             CCc-eEEEEEEe--CCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCC-CC-------c---cCceeeEEEeeCC--
Q psy407           17 TLC-HNVYLLLA--THVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSS-DD-------K---VFRKFSFKAEHAN--   79 (160)
Q Consensus        17 k~W-kkRWFVL~--~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~-~~-------~---~~~~~~F~i~~~~--   79 (160)
                      +.+ ++|.|.|+  +..|++      ++... ...+.|.|.... |..... .+       .   .....+|.|....  
T Consensus        18 ~~~~~~~~f~ld~~~~~l~W------~~~~~-~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~   90 (115)
T cd01248          18 TSRERRRLFRLDEKGFFLYW------KDEGK-KEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDL   90 (115)
T ss_pred             CCceeeEEEEEcCCCcEEEE------eCCCC-ccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCC
Confidence            344 45668886  446665      33221 155677776632 222111 00       0   1223588887653  


Q ss_pred             -ceEEEEEcCCHHHHHHHHHHHHH
Q psy407           80 -MRTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        80 -~r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                       .++..|.|+|.++.+.|+..|+.
T Consensus        91 ~~k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          91 NLKSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             CeeEEEEEECCHHHHHHHHHHHhh
Confidence             47899999999999999999874

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3549|consensus

Probab=95.35  E-value=0.021  Score=49.18  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEE-----EecCCCC-ccCceeeEEEeeCCceEEEEE
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKI-----SPCSSDD-KVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V-----~~~~~~~-~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      +-..+.++.||..|++.++|.     |..+--.....+-.+.-+.|     .++.+.| .-.|++||.|...+....||+
T Consensus       294 ~~s~q~y~P~FLaLkG~~~y~-----F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~ge~~yfs  368 (505)
T KOG3549|consen  294 NISWQSYKPRFLALKGTEVYL-----FETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSGGEPRYFS  368 (505)
T ss_pred             cccccccCceeEEecCcEEEE-----EcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccceEEEEcCCCCceEEE
Confidence            345667999999999999998     77654322211111111111     1111111 126899999998878889999


Q ss_pred             cCCHHHHHHHHHHHHHhHh
Q psy407           87 ADTRESMIQWMNALSLASI  105 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~  105 (160)
                      .|.+.|+.+|=++.+.|.-
T Consensus       369 VEl~seLa~wE~sfq~Atf  387 (505)
T KOG3549|consen  369 VELRSELARWENSFQAATF  387 (505)
T ss_pred             EehhhHHHHHHHHHhhHHh
Confidence            9999999999999999874

>PF15408 PH_7: Pleckstrin homology domain

Probab=95.16  E-value=0.0084  Score=41.79  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=53.5

Q ss_pred             ceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEe--cCCCCc-cC---ceeeEEEeeCCceEEEEEcCCHHH
Q psy407           19 CHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISP--CSSDDK-VF---RKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        19 WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~--~~~~~~-~~---~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      -+|||.||++..+.+     |.++. ..-+.++.|+...+..  ++-... .+   .-|.|-...++.+..-+-|++.+-
T Consensus        12 i~rRF~~L~~K~~~~-----~~~KG-G~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~FA~S~~~   85 (104)
T PF15408_consen   12 IQRRFVMLRSKQFNM-----YEDKG-GQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCFASSKKV   85 (104)
T ss_pred             HHHHHHhhhhceeEE-----ecccC-CceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhhhhHHHH
Confidence            478999999999998     76543 4455666665533322  111000 01   235677777777888899999999


Q ss_pred             HHHHHHHHHHh
Q psy407           93 MIQWMNALSLA  103 (160)
Q Consensus        93 ~~~Wi~aL~~a  103 (160)
                      |+.||.++..-
T Consensus        86 ~~~Wi~~mN~~   96 (104)
T PF15408_consen   86 CQSWIQVMNSP   96 (104)
T ss_pred             HHHHHHHhcCh
Confidence            99999999763

>KOG2996|consensus

Probab=95.13  E-value=0.035  Score=50.64  Aligned_cols=117  Identities=20%  Similarity=0.222  Sum_probs=77.8

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCcc-CccceEEEcCCeEEEecCCCCcc--C-----ceeeEEEeeC-CceEEEEEcC
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFEE-EKLLGSILLPSYKISPCSSDDKV--F-----RKFSFKAEHA-NMRTYYFAAD   88 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~e-~~~~g~I~L~~~~V~~~~~~~~~--~-----~~~~F~i~~~-~~r~~~l~Ae   88 (160)
                      .=+.||..|-+..+..     -|-..+ .+....|.|..+.+...+..+.-  +     ..|.|-|++. +..-|-|-+.
T Consensus       421 tkqdRyiFLfDkvviV-----CKrkG~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~ngl~fy~K  495 (865)
T KOG2996|consen  421 TKQDRYIFLFDKVVIV-----CKRKGDSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQGRNGLEFYCK  495 (865)
T ss_pred             CccceEEeEecceEEE-----eeccCcchhHHHHHHHHhhccccCCCCchhhhhccceeeeeeEEEEEEcCCcceEEEEe
Confidence            3467887777765555     443332 45666788888888775443221  2     5688888764 4557888899


Q ss_pred             CHHHHHHHHHHHHHhHhhccCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCccccccCc
Q psy407           89 TRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGG  150 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~  150 (160)
                      |++-...||.++..|...-.+           |-.+...|..+--....+.-|.+|+-.|-|
T Consensus       496 te~~kkkWmeqfema~SNi~P-----------dya~an~H~fqmhtF~~~tsCkvC~mllrG  546 (865)
T KOG2996|consen  496 TEDLKKKWMEQFEMAKSNISP-----------DYARANNHDFQMHTFKNTTSCKVCQMLLRG  546 (865)
T ss_pred             cHHHHHHHHHHHHHHHhcCCc-----------ccccccCcceEEEeccCCcchHHHHHHhhh
Confidence            999999999999998632222           112233444444455888899999998877

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=94.49  E-value=0.37  Score=36.60  Aligned_cols=90  Identities=13%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             EecCCCCCCceE----EEEEEeCCeEEEcccCCCCCCcc--Cc-----------------cceEEEcCCeEEEecCCCCc
Q psy407           10 LNDNMASTLCHN----VYLLLATHVMVFSPEISGLGFEE--EK-----------------LLGSILLPSYKISPCSSDDK   66 (160)
Q Consensus        10 ~~~~~~~k~Wkk----RWFVL~~~~L~y~~~~yYk~~~e--~~-----------------~~g~I~L~~~~V~~~~~~~~   66 (160)
                      ||-..+.+.|||    -=||++.-....     ||+...  .+                 .+..|++....|...+..+ 
T Consensus        36 LNp~~slgk~kKe~e~~~FVFK~AVVlv-----~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad-  109 (160)
T cd01255          36 LNPSDSLGKIKKELELMCFVFKSAVVLV-----YKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAAD-  109 (160)
T ss_pred             ecCChhhccccCCceEEEEEecceEEEE-----EcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcC-
Confidence            444445555665    348888887776     765433  12                 2336777777777665544 


Q ss_pred             cCceeeEEEeeC-------CceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           67 VFRKFSFKAEHA-------NMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        67 ~~~~~~F~i~~~-------~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      ....+.++|+|.       ..++|.|+|.+.+..+..|++|++..+
T Consensus       110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilr  155 (160)
T cd01255         110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILR  155 (160)
T ss_pred             cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence            367889999874       257999999999999999999998654

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>PF15411 PH_10: Pleckstrin homology domain

Probab=94.11  E-value=0.73  Score=33.55  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCcc-------------------CccceEEEcCCeE-EEecCCCCccCceeeEEEe
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEE-------------------EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAE   76 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e-------------------~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~   76 (160)
                      ..|+.+.+-|-+..|.+     .|....                   -.++|.|.+...+ |...+.    ...|...|.
T Consensus        19 ~~erE~~vYLFe~illc-----~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~----~g~~~L~i~   89 (116)
T PF15411_consen   19 DSEREYEVYLFEKILLC-----CKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSK----PGSYSLQIS   89 (116)
T ss_pred             CcceeeeeeeeeeeEEE-----EecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCC----CCceEEEEE
Confidence            56999999998887777     443221                   1245777776422 222221    235667776


Q ss_pred             e---CCceEEEEEcCCHHHHHHHHHHH
Q psy407           77 H---ANMRTYYFAADTRESMIQWMNAL  100 (160)
Q Consensus        77 ~---~~~r~~~l~Aese~e~~~Wi~aL  100 (160)
                      -   ++.-.|.|...|+++|..|-++|
T Consensus        90 w~~d~e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   90 WKGDPELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             EcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence            4   35678999999999999998875

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=93.95  E-value=0.11  Score=38.68  Aligned_cols=36  Identities=14%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             CceeeEEEeeCCc--eEEEEEcCCHHHHHHHHHHHHHh
Q psy407           68 FRKFSFKAEHANM--RTYYFAADTRESMIQWMNALSLA  103 (160)
Q Consensus        68 ~~~~~F~i~~~~~--r~~~l~Aese~e~~~Wi~aL~~a  103 (160)
                      +..|.|+|.+-+.  .+|.|.|+|+.++++|+++|..+
T Consensus        97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            5678888877543  35799999999999999999875

>KOG0705|consensus

Probab=93.44  E-value=0.057  Score=49.22  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           71 FSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        71 ~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      ++|.|...-..+++|.|.+.+|+..||.||..-+.
T Consensus       446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIl  480 (749)
T KOG0705|consen  446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQIL  480 (749)
T ss_pred             ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHH
Confidence            59999876667999999999999999999987553

>KOG1264|consensus

Probab=92.82  E-value=0.2  Score=47.51  Aligned_cols=59  Identities=20%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             cceEEEcCCeEEEecCCCCccCceeeEEEeeC--CceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           47 LLGSILLPSYKISPCSSDDKVFRKFSFKAEHA--NMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        47 ~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~--~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .+|..++.-|.|...+.+. .++.|+|.|...  +...|.|+|++.++..+|+++|+.++..
T Consensus       852 ~rgi~d~~~~nvv~~~q~~-n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~  912 (1267)
T KOG1264|consen  852 CRGILDLNTYNVVKAPQGK-NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK  912 (1267)
T ss_pred             hhccccccccceeeccccc-CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence            4456677777776655432 367899998742  4567999999999999999999998743

>PF15404 PH_4: Pleckstrin homology domain

Probab=92.45  E-value=0.71  Score=36.38  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             eEEEEEcCCHHHHHHHHHHHHH
Q psy407           81 RTYYFAADTRESMIQWMNALSL  102 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~  102 (160)
                      +.++|.|-|.+|+..||-+|..
T Consensus       162 ks~VF~ARSRqERD~WV~~I~~  183 (185)
T PF15404_consen  162 KSMVFMARSRQERDLWVLAINT  183 (185)
T ss_pred             cEEEEEeccHHHHHHHHHHHHh
Confidence            6789999999999999999975

>KOG0517|consensus

Probab=91.74  E-value=0.0033  Score=62.92  Aligned_cols=88  Identities=19%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             EecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCc------cceEE--EcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407           10 LNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEK------LLGSI--LLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus        10 ~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~------~~g~I--~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      ++.+...+.|..-|+|+..+.|.+     |+|.....      ..|.-  .|..+.|....+  -.++++.|++..+...
T Consensus      2314 ~e~k~~nRsw~~vy~~i~e~el~f-----ykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~d--y~kkk~v~~l~~~~ga 2386 (2473)
T KOG0517|consen 2314 LEIKASNRSWDNVYCRIREKELGF-----YKDAKKDLASVELLVRGEPPLELDMAAIEVASD--YHKKKHVFLLQLPPGA 2386 (2473)
T ss_pred             hhhhhhcccHHHHHHHHHhccchh-----hcccCcccccchhhccCCcchhcchhHHHHHHH--HHHHhHhhhhcCCchH
Confidence            455778889999999999999998     88865421      12222  223333433222  2378899999988888


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .|.|.|.++++|..|+.++..+.
T Consensus      2387 e~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2387 EHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHH
Confidence            99999999999999999988875

>KOG4407|consensus

Probab=91.29  E-value=0.017  Score=56.59  Aligned_cols=82  Identities=18%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCccC--------------ccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEEE--------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~--------------~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      .+.|++-|.+|.++.|+.     |++..+.              ..--.+.|.+|.+.+.-.+  .+++.+|++.+.+..
T Consensus       946 Lr~wk~~y~~l~ghsl~L-----~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~yse--tkrn~vfRLTt~d~c 1018 (1973)
T KOG4407|consen  946 LREWKLSYTGLHGHSLVL-----NSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSE--TKRNQVFRLTTNDLC 1018 (1973)
T ss_pred             hhhhhhHHHHhcccccee-----cccccccCcchhhhhcccccccccCccccccchhhhhhhh--hhhhhHHHhHHHHHH
Confidence            456999999999999998     8887762              1223567778877664332  378889999887767


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .+.|.||+.++|..|+......+
T Consensus      1019 e~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 1019 EGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred             hHhhccCccccccchhhhhhhcc
Confidence            89999999999999999886544

>KOG3551|consensus

Probab=91.04  E-value=0.36  Score=42.30  Aligned_cols=97  Identities=12%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc-----CccceEEEcCCeEEEecCCCC---ccCceeeEE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE-----EKLLGSILLPSYKISPCSSDD---KVFRKFSFK   74 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-----~~~~g~I~L~~~~V~~~~~~~---~~~~~~~F~   74 (160)
                      |+|.|.-=-..+|.+.|+.-+.+|.+..|.+     |.+--.     .+|..+-+|-...+....+..   ..+-..+|.
T Consensus       294 HiGWLaeq~~~~G~~~w~P~l~~lTekelli-----Yes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa  368 (506)
T KOG3551|consen  294 HIGWLAEQVSGGGISQWKPKLMALTEKELLI-----YESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFA  368 (506)
T ss_pred             hhhhHHhhccCCChhhhhhheeeechhhhhh-----hhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEE
Confidence            5565554445566778999999999987777     665322     457777777554443332211   012234777


Q ss_pred             EeeC---CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           75 AEHA---NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        75 i~~~---~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +.+.   +-.+++|++||..|+..|...|-+.+
T Consensus       369 ~RtGTrqGV~thlfrvEThrdLa~WtRslVqGc  401 (506)
T KOG3551|consen  369 TRTGTRQGVETHLFRVETHRELAAWTRSLVQGC  401 (506)
T ss_pred             EecccccceEEEEEEeccHHHHHHHHHHHHHHH
Confidence            7653   34799999999999999999887644

>KOG4236|consensus

Probab=90.06  E-value=0.38  Score=44.16  Aligned_cols=84  Identities=15%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             ceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCe-EEEecCCC---CccCceeeEEEeeCCceEEEEEcCC-----
Q psy407           19 CHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSY-KISPCSSD---DKVFRKFSFKAEHANMRTYYFAADT-----   89 (160)
Q Consensus        19 WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~-~V~~~~~~---~~~~~~~~F~i~~~~~r~~~l~Aes-----   89 (160)
                      -||.|..|+..|+..     |.++...+-...|+|... .|+.....   -....+|+|+|.+..  +.||.-|+     
T Consensus       429 RkrHYWrldsk~itl-----fqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~--~vyfVge~p~~~~  501 (888)
T KOG4236|consen  429 RKRHYWRLDSKCITL-----FQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT--TVYFVGENPSSTP  501 (888)
T ss_pred             hhhhhheeccceeEe-----eecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee--EEEEecCCCCCCc
Confidence            366677888899999     999988888899999874 45444311   112468999999754  67888888     


Q ss_pred             -------HHHHHHHHHHHHHhHhhccC
Q psy407           90 -------RESMIQWMNALSLASILQNS  109 (160)
Q Consensus        90 -------e~e~~~Wi~aL~~a~~~~~~  109 (160)
                             .+-.+-|-.||++|.+.-.+
T Consensus       502 ~~~~g~g~d~a~~w~~ai~~alMpV~p  528 (888)
T KOG4236|consen  502 GGESGVGLDAAQGWETAIQQALMPVTP  528 (888)
T ss_pred             cccccccchhhccCchhhhhccccccc
Confidence                   56689999999999865443

>KOG0248|consensus

Probab=89.90  E-value=0.26  Score=45.88  Aligned_cols=80  Identities=8%  Similarity=-0.147  Sum_probs=58.1

Q ss_pred             CCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC-eEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           14 MASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        14 ~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~-~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      .-+|.|++|||++.++.+.|     |+++-+ .+.+.|.+.+ |.+.--...  ...++.|.-     .++++-+|...-
T Consensus       270 ~v~k~gqi~~y~~~~~~~~~-----p~s~~d-~~s~~~~~~~~~s~~fqli~--~t~~~~~~~-----~s~~lt~dw~~i  336 (936)
T KOG0248|consen  270 VVFKNGQISFYRKHNNRDEE-----PASKID-IRSVTKLEQQGAAYAFQLIT--STDKMNFMT-----ESERTTHDWVTI  336 (936)
T ss_pred             eeeccceEEEEEcCCCcccc-----ccCccc-ccccceeeccchhHHhhhhh--hceeEEEec-----cChhhhhhhHHH
Confidence            34688999999999999998     998874 5778887755 665432221  133443422     368999999999


Q ss_pred             HHHHHHHHHHhHhh
Q psy407           93 MIQWMNALSLASIL  106 (160)
Q Consensus        93 ~~~Wi~aL~~a~~~  106 (160)
                      +++||+++...-..
T Consensus       337 L~~~iKv~~~~~~a  350 (936)
T KOG0248|consen  337 LSAAIKATTLREMA  350 (936)
T ss_pred             HHHHHHHHhccchh
Confidence            99999999876543

>KOG3523|consensus

Probab=89.30  E-value=0.64  Score=42.72  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             ceEEEEEEeCCeEEEcccCCCCCCccC-------ccceEEEcCCeEEEe-cCCC--CccCceeeEEEee----C-CceEE
Q psy407           19 CHNVYLLLATHVMVFSPEISGLGFEEE-------KLLGSILLPSYKISP-CSSD--DKVFRKFSFKAEH----A-NMRTY   83 (160)
Q Consensus        19 WkkRWFVL~~~~L~y~~~~yYk~~~e~-------~~~g~I~L~~~~V~~-~~~~--~~~~~~~~F~i~~----~-~~r~~   83 (160)
                      -|.-|+-|-..+|..     -|...+.       .+.+.|.+..|.-.. .+..  ....+++.|.+.-    . ....|
T Consensus       499 ~~~vylfLFnD~Lli-----tk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~  573 (695)
T KOG3523|consen  499 SKTVYLFLFNDLLLI-----TKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTEL  573 (695)
T ss_pred             cceeeeeeecceeeE-----eeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceee
Confidence            445666666666665     4443332       344455544443101 0000  0123567888752    1 23589


Q ss_pred             EEEcCCHHHHHHHHHHHHH
Q psy407           84 YFAADTRESMIQWMNALSL  102 (160)
Q Consensus        84 ~l~Aese~e~~~Wi~aL~~  102 (160)
                      .|+|+|+.||++||.||.-
T Consensus       574 lL~a~s~Sd~~RWi~Al~p  592 (695)
T KOG3523|consen  574 LLSAESQSDRQRWISALRP  592 (695)
T ss_pred             eecCCchHHHHHHHHhcCC
Confidence            9999999999999999984

>KOG4047|consensus

Probab=87.57  E-value=0.41  Score=42.29  Aligned_cols=99  Identities=15%  Similarity=0.037  Sum_probs=60.0

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEc--ccCCC-CCCcc-----CccceEEEcCCeE-EEecCCCCccCceeeEEE
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFS--PEISG-LGFEE-----EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKA   75 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~--~~~yY-k~~~e-----~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i   75 (160)
                      |++-.-..+-+.|.|.++|.+|..+.+.--  =+.++ +..+.     .-..-.|.|.+|. |+...-+......+.|..
T Consensus        12 g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~i~~~f~   91 (429)
T KOG4047|consen   12 GVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPGITAFFC   91 (429)
T ss_pred             CccchhhhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCCceEEEe
Confidence            333344456677899999999986532210  00002 22222     1123577888864 555543333356677666


Q ss_pred             eeCCceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           76 EHANMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        76 ~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .... .  +|-|+++-+...||++|..-+..
T Consensus        92 ~~a~-e--~~~~~q~l~~~~w~~~i~~~~~~  119 (429)
T KOG4047|consen   92 DRAE-E--LFNMLQDLMQANWINAIEEPAIP  119 (429)
T ss_pred             cchH-H--HHHHHHHHHhhhhhhhhhhcccc
Confidence            5433 2  88899999999999999987765

>KOG1170|consensus

Probab=85.96  E-value=0.031  Score=52.58  Aligned_cols=79  Identities=16%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             CCceEEEEEEeCCe-EEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           17 TLCHNVYLLLATHV-MVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        17 k~WkkRWFVL~~~~-L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      ..|++|++.+++.. ++|     -+.... -..-.+.|....|...   .+.+.++.|.|+++. ++..++|++..+|..
T Consensus        16 Ea~k~r~~~~k~~~~~~v-----akTa~g-~~~~~~d~t~a~~~eS---s~~n~~~sf~vi~~~-rk~r~~adn~ke~e~   85 (1099)
T KOG1170|consen   16 EAWKQSILRAKDRMPEKV-----AKTASG-PLFALLDLTSAHVAES---STNNPRPSFCVITPV-RKHRLCADNRKEMEK   85 (1099)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HhccCC-ccHHHHhccccccccc---ccCCCCCCeeEeccc-HHhhhhccchhHHHH
Confidence            36999999999876 444     333222 2222334444443322   234667789998764 789999999999999


Q ss_pred             HHHHHHHhHh
Q psy407           96 WMNALSLASI  105 (160)
Q Consensus        96 Wi~aL~~a~~  105 (160)
                      ||+++++-.-
T Consensus        86 wi~~~kt~q~   95 (1099)
T KOG1170|consen   86 WINQSKTPQH   95 (1099)
T ss_pred             hhccccchhh
Confidence            9999998643

>KOG3531|consensus

Probab=81.64  E-value=2.1  Score=40.84  Aligned_cols=76  Identities=14%  Similarity=0.185  Sum_probs=53.9

Q ss_pred             eEEEEEEe-CCeEEEcccCCCCCCc---cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           20 HNVYLLLA-THVMVFSPEISGLGFE---EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        20 kkRWFVL~-~~~L~y~~~~yYk~~~---e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      ++|=|.|- +-.||-     -|+..   .-...|.|+|. .+++.++.+  ..-+|+|.|.. ..+..|.+|.+..++..
T Consensus       765 qqrmfFLfsdillyt-----sk~~~~~~~fri~g~lP~~-l~~en~en~--~s~p~~~ti~~-~qk~i~vsast~~~sk~  835 (1036)
T KOG3531|consen  765 QQRMFFLFSDILLYT-----SKGPDVQKCFRINGDLPLT-LTMENSENE--WSVPHCFTISG-AQKQIYVSASTRRESKK  835 (1036)
T ss_pred             hhhhhhhhhhhheec-----cCCCChhheeEeccCCceE-eeeeccccc--ccCCceEEEec-cceEEEEeccchhhhhh
Confidence            45544454 444443     34422   24577889988 666666443  56789999975 46899999999999999


Q ss_pred             HHHHHHHhH
Q psy407           96 WMNALSLAS  104 (160)
Q Consensus        96 Wi~aL~~a~  104 (160)
                      |+..++.|.
T Consensus       836 ~~~~r~~~i  844 (1036)
T KOG3531|consen  836 WEFDRRKAI  844 (1036)
T ss_pred             hhhccchhh
Confidence            999888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		5e-15
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		4e-13
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		1e-10
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		3e-10

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct: 57  KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116
Query: 103 ASILQNS 109
           A+++Q S
Sbjct: 117 AALVQTS 123

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 3   HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCS 62
           H+   +   D+    L    + +L+ H + +  +       EE +LGS+LLPSY I P  
Sbjct: 12  HIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDS-----REESVLGSVLLPSYNIRPDG 66
Query: 63  SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
                 R+F+F AEH  MRTY  AADT E +  W+ AL  AS  +    G
Sbjct: 67  PGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYG 116

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 47  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106
Query: 103 ASILQN 108
           A+ +Q+
Sbjct: 107 AARVQS 112

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 58  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117
Query: 103 ASILQ 107
           A+ +Q
Sbjct: 118 AARVQ 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2dkp_A	128	Pleckstrin homology domain-containing family A mem	2e-22
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	2e-21
2yry_A	122	Pleckstrin homology domain-containing family A mem	2e-21
2d9y_A	117	Pleckstrin homology domain-containing protein fami	6e-21
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	7e-20
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	3e-19
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	2e-18
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	6e-18
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	4e-17
3cxb_B	112	Pleckstrin homology domain-containing family M mem	4e-16
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	3e-15
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	3e-15
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	7e-15
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	8e-15
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	5e-14
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	6e-14
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	2e-12
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	6e-12
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	8e-12
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	1e-11
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	3e-11
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	5e-11
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	5e-11
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	1e-10
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	2e-10
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	7e-10
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	8e-10
2d9v_A	130	Pleckstrin homology domain-containing protein fami	1e-09
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	1e-09
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	1e-09
1wi1_A	126	Calcium-dependent activator protein for secretion,	4e-09
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	5e-09
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	6e-09
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	7e-09
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	1e-08
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	1e-08
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	1e-08
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	2e-08
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	3e-08
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	5e-08
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	8e-08
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	4e-07
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	5e-07
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	7e-07
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	1e-06
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-06
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	2e-06
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	4e-06
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	4e-06
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	5e-06
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	6e-06
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	7e-06
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	9e-06
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	2e-04

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 85.6 bits (212), Expect = 2e-22
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct: 57  KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116

Query: 103 ASILQNSS 110
           A+++Q S 
Sbjct: 117 AALVQTSG 124

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 83.3 bits (206), Expect = 2e-21
 Identities = 33/70 (47%), Positives = 40/70 (57%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  
Sbjct: 47  REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 106

Query: 103 ASILQNSSTG 112
           AS  +    G
Sbjct: 107 ASRAEGDDYG 116

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 82.9 bits (205), Expect = 2e-21
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 58  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117

Query: 103 ASILQ 107
           A+ +Q
Sbjct: 118 AARVQ 122

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 81.3 bits (201), Expect = 6e-21
 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 47  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106

Query: 103 ASILQ-NSSTG 112
           A+ +Q   S+G
Sbjct: 107 AARVQSGPSSG 117

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 78.6 bits (194), Expect = 7e-20
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           E+   L S  L  + ++    ++       F+  H  M  Y F AD   S  +W++A   
Sbjct: 43  EDVAALESQPLLGFTVTLVKDENS--ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQE 100

Query: 103 ASILQNSSTG 112
            ++    S+G
Sbjct: 101 GTV-SGPSSG 109

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 76.9 bits (189), Expect = 3e-19
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           ++ +L  +I LPS K+S    ++++     +K + A  +++Y +A + E   QW+  LS 
Sbjct: 45  QDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLST 103

Query: 103 AS 104
           A+
Sbjct: 104 AA 105

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 75.7 bits (186), Expect = 2e-18
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           ++++  G   +  Y +   ++  K  +K   F+    + R Y F A + +   +W+  L 
Sbjct: 56  KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 115

Query: 102 LASILQNSSTGWEDRRLNNEDNDS 125
                  S    ED     E  D 
Sbjct: 116 FILQDLGSDVIPEDDEERGELYDD 139

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 73.6 bits (181), Expect = 6e-18
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVF-RKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           + ++  G+ L+  Y +       +   ++  F+    + RTY F A +      W++ +S
Sbjct: 42  KSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQIS 101

Query: 102 LA 103
             
Sbjct: 102 FL 103

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 71.7 bits (176), Expect = 4e-17
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------AEHANMRTYYFAADTRESMIQ 95
           E+ K  G + LP   I   +++ +   KF F+              +Y   A ++  M +
Sbjct: 43  EDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEE 102

Query: 96  WMNALSLASILQNSSTG 112
           W+  L         S+G
Sbjct: 103 WVKFLRRV-AGSGPSSG 118

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 68.7 bits (168), Expect = 4e-16
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            +   L S+ +   +   C   +   R  +F+   ++      +A++   M +WM  L  
Sbjct: 39  TDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQ 98

Query: 103 A 103
           A
Sbjct: 99  A 99

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 69.0 bits (168), Expect = 3e-15
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           ++++  G   +  Y +   ++  K  +K   F+    + R Y F A + +   +W+  L 
Sbjct: 145 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 204

Query: 102 LA 103
             
Sbjct: 205 FI 206

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 67.1 bits (164), Expect = 3e-15
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 43  EEEKLLGSILLPSYKISPCSSD---DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
             E  LG+I L    ++   S+    K   +  F+   A+   Y+  A T +   +W+ A
Sbjct: 55  GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 114

Query: 100 LSLASILQNSS 110
           + +AS    S 
Sbjct: 115 IQMASRTGKSG 125

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 66.5 bits (162), Expect = 7e-15
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             ++  GSI L S      ++     R+F+F+ +  +  +Y  AAD+   M +W+  L+ 
Sbjct: 65  ISKEPKGSIFLDSCMGVVQNNKV---RRFAFELKMQDKSSYLLAADSEVEMEEWITILNK 121

Query: 103 ASILQNSSTGWEDRRLNNEDNDS 125
              L   +   E R  ++ ++D 
Sbjct: 122 ILQLNFEAAMQEKRNGDSHEDDE 144

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 65.5 bits (160), Expect = 8e-15
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            +    G I L    ++     D   R F FK      + ++F A   E    W+  ++ 
Sbjct: 40  SDNSPKGMIPLKGSTLT-SPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINK 98

Query: 103 A 103
           A
Sbjct: 99  A 99

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 63.2 bits (154), Expect = 5e-14
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 43  EEEKLLGSILLPSYKIS---PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
             E  LG+I L    ++     S+  K   +  F+   A+   Y+  A T +   +W+ A
Sbjct: 44  GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 103

Query: 100 LSLAS 104
           + +AS
Sbjct: 104 IQMAS 108

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 63.6 bits (155), Expect = 6e-14
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 43  EEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
            E++ L  I L   +K+  C   D + R   F+    + RT+Y  AD+ E M  W+ A+S
Sbjct: 49  LEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVS 107

Query: 102 LASILQNSSTGWEDRR 117
             +I+     G     
Sbjct: 108 -GAIVAQRGPGRSASS 122

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            EEKL G++ + S         D   ++       A+ RT++  A++ E   QW + LS 
Sbjct: 98  SEEKLKGTVEVRSA----KEIIDNTNKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQ 152

Query: 103 ASI-----LQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPN 141
                   ++       + +      D G   +   S +  +PN
Sbjct: 153 VHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPDRPN 196

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 58.0 bits (140), Expect = 6e-12
 Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 8/69 (11%)

Query: 43  EEEKLLGSILLPS--------YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 94
             + +   + +P          +       D   +    +    + +T    A++ +  +
Sbjct: 41  TRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCL 100

Query: 95  QWMNALSLA 103
            W   L  +
Sbjct: 101 AWKFTLQDS 109

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 57.5 bits (139), Expect = 8e-12
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +     + L   ++ P  S D     +SF+  H         A + E M  W+  L  
Sbjct: 42  RSKVAQQPLSLVGCEVVPDPSPD---HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLS 98

Query: 103 AS 104
            S
Sbjct: 99  ES 100

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 43  EEEKLLGSILLPSY------KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 96
            +   +G+  + S       K+S  +   K    F F   +A  + Y+  A+ ++ +  W
Sbjct: 53  PQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFV-INALSQRYFLQANDQKDLKDW 111

Query: 97  MNALSLAS 104
           + AL+ AS
Sbjct: 112 VEALNQAS 119

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVF------RKFSFKAEHANMRTYYFAADTRESMIQW 96
           EE + +G   L    +S    +          +   FK    +   YY  A ++    +W
Sbjct: 56  EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEW 115

Query: 97  MNALSLASILQNSSTG 112
           + A+    +    S+G
Sbjct: 116 IEAIK--KLTSGPSSG 129

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 43  EEEKLLGSILLPS-----YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM 97
            + +  G I L              +   V  K  F  +    R Y F A    S  QW+
Sbjct: 45  MDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYNFCAQDVPSAQQWV 103

Query: 98  NALSLASILQNSSTG 112
           + +  + +    S+G
Sbjct: 104 DRIQ-SCLSSGPSSG 117

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           ++   L SI L S      +       +  F+      R     A T+++M+ W+  L +
Sbjct: 47  QDANPLDSIDLSSAVFDCKADA----EEGIFEI-KTPSRVITLKAATKQAMLYWLQQLQM 101

Query: 103 ASILQNSST 111
                ++S 
Sbjct: 102 KRWEFHNSP 110

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           + +   G ILL        S  DK  +K  F       +T+  +A  ++   +W+ A+  
Sbjct: 43  DLKDKKGDILL-DENCCVESLPDKDGKKCLFLV-KCFDKTFEISASDKKKKQEWIQAIHS 100

Query: 103 A-SILQNSSTG 112
              +L+  S+G
Sbjct: 101 TIHLLKLGSSG 111

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 19/85 (22%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVF------------------RKFSFKAEHANMRTYY 84
            +++  G I L +  I       K                     +   +    N   Y 
Sbjct: 40  TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 99

Query: 85  FAADTRESMIQWMNALSLASILQNS 109
            +A + E   +WM ++  ASI ++ 
Sbjct: 100 ISAPSPEEKEEWMKSIK-ASISRDP 123

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 52.8 bits (127), Expect = 7e-10
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
              + +  + L     S    D    R   F       RT+Y  A T     +W+  L  
Sbjct: 53  MSPEPIRILDLTE--CSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRW 109

Query: 103 A 103
            
Sbjct: 110 K 110

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 52.4 bits (126), Expect = 8e-10
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           +E    G I L +  IS             F+      RT+ F  +  E    W++ L  
Sbjct: 44  KEMYSKGIIPLSA--ISTVRVQ----GDNKFEVVT-TQRTFVFRVEKEEERNDWISILLN 96

Query: 103 ASILQNSS 110
           A   Q+ +
Sbjct: 97  ALKSQSLT 104

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 8/78 (10%)

Query: 43  EEEKLLGSILLPSYKIS--------PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 94
             +     +++                   +   R              +  A+TR+  I
Sbjct: 44  TAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAI 103

Query: 95  QWMNALSLASILQNSSTG 112
            W  AL  A+     +  
Sbjct: 104 AWKTALMEANSTPAPAGA 121

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 20  HNVYLLLATHVMVF--SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH 77
             +Y++L  H +             EEE     I + +  I    S+ K  RK  F+   
Sbjct: 30  KQMYVVLRGHSLYLYKDKREQTTPSEEE---QPISVNACLIDISYSETK--RKNVFRLTT 84

Query: 78  ANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNEDNDS 125
           ++     F A+ R+ M+ W+  +  +S L    TG  +R L +     
Sbjct: 85  SD-CECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLISRRIKE 131

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 21/82 (25%)

Query: 43  EEEKLLGSILLPSYKISPC--SSDDKVFRKFSF-------------------KAEHANMR 81
           + +  +G I L +        ++ +   R+ +F                     +   + 
Sbjct: 45  KRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVT 104

Query: 82  TYYFAADTRESMIQWMNALSLA 103
             + +ADT+E    WM  L+  
Sbjct: 105 KNWLSADTKEERDLWMQKLNQV 126

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
           ++ +    + L  Y +        +    +F        T  FA+D  +  I W+ A+  
Sbjct: 48  KKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYR 107

Query: 103 AS 104
           A+
Sbjct: 108 AT 109

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 8/91 (8%)

Query: 20  HNVYLLLATHVMVF-------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFS 72
              + +L   V+ F       +        +      ++ L    +S    D    RK  
Sbjct: 32  SASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKS-SRKNV 90

Query: 73  FKAEHANMRTYYFAADTRESMIQWMNALSLA 103
            +    +   Y    D+   +  W  A++  
Sbjct: 91  LELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 20  HNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN 79
            NVY +L    + F  + +          G + +   +     + D   RK  FK    +
Sbjct: 33  QNVYCVLRRGSLGFYKD-AKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQD 91

Query: 80  MRTYYFAADTRESMIQWMNALSLAS 104
            + Y F A     M  W+  ++ A 
Sbjct: 92  GKEYLFQAKDEAEMSSWLRVVNAAI 116

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 49.8 bits (119), Expect = 7e-09
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             +   GSI +   +I   S+D+        +      + +Y  A       +W+ AL  
Sbjct: 36  VCKGSKGSIKMAVCEIKVHSADNT-----RMELIIPGEQHFYMKAVNAAERQRWLVALGS 90

Query: 103 AS 104
           + 
Sbjct: 91  SK 92

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 20  HNVYLLLATHVMVF---SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE 76
             VY+      + F               +   S  L +  I   S   K  +K   + +
Sbjct: 33  DKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTK--KKHVLRVK 90

Query: 77  HANMRTYYFAADTRESMIQWMNALSLAS 104
            AN   +   A     M QW+ +L   S
Sbjct: 91  LANGALFLLQAHDDTEMSQWVTSLKAQS 118

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            E    GSI L    I+P   D+    +F       N   +Y  A   +   QW++A+  
Sbjct: 38  TEYGCRGSICLSKAVITPHDFDEC---RFDI---SVNDSVWYLRAQDPDHRQQWIDAIEQ 91

Query: 103 A 103
            
Sbjct: 92  H 92

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY-------FAADTRESMIQ 95
           EE++    + + + K+        +  K  F   +   R  Y        A +T+E +  
Sbjct: 49  EEKEKKYMLSVDNLKLRDVE-KGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDS 107

Query: 96  WMNALSLASILQNSST 111
           W  +   A +      
Sbjct: 108 WKASFLRAGVYPERVG 123

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
              +K  G++ L    ISP   D       +F    A+   Y   A   +    W++ L 
Sbjct: 46  SRNQKPRGTLQLAGAVISPSDED-----SHTFTVNAASGEQYKLRATDAKERQHWVSRLQ 100

Query: 102 LASILQNSSTGWED 115
           + +     + G  +
Sbjct: 101 ICTQHHTEAIGKNN 114

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 20  HNVYLLLATHVMVF------SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSF 73
              +++L  + +VF      +   SG G    +   S+ L    ++         R+   
Sbjct: 35  GPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSS--RRNVL 92

Query: 74  KAEHANMRTYYFAADTRESMIQWMNALSLA 103
                    +   +D    +  W  AL   
Sbjct: 93  HIRTIPGHEFLLQSDHETELRAWHRALRTV 122

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 20  HNVYLLLATHVM-VFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA 78
           HNVY ++    M  +    S            + L            K  +K  FK   +
Sbjct: 24  HNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKK--KKHVFKLRLS 81

Query: 79  NMRTYYFAADTRESMIQWMNALSLA 103
           +   Y F A   E M  W+ A+S A
Sbjct: 82  DGNEYLFQAKDDEEMNTWIQAISSA 106

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 20  HNVYLLLATHVMVF--SPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH 77
            + ++ L    + F  +   SG+         ++ + +  +       K  + F F   +
Sbjct: 40  KHYWVSLKGCTLFFYETDGRSGID-HNSVPKHAVWVENSIVQAVPEHPK--KDFVFCLSN 96

Query: 78  ANMRTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRL 118
           +    + F   ++  +  W+ A+  A     +    ++  L
Sbjct: 97  SLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTL 137

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 48  LGSILLPSYKISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNALSLAS 104
           +  + L   ++ P  +     +KF  K        M   Y      +   +WM    LAS
Sbjct: 54  IQQLNLKGCEVVPDVNVSG--QKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111

Query: 105 ILQNSSTGWEDRRLNN 120
             +  +       +  
Sbjct: 112 KGRTMADSSYTSEVQA 127

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 45.4 bits (107), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 48  LGSILLPSYKISPCSSDDKVFR--------KFSFKAEHANM----RTYYFAADTRESMIQ 95
           + S+ L    ++  S  +            KF   A+   +      + F AD+ ESM+ 
Sbjct: 49  VMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMS 108

Query: 96  WMNAL 100
           W + L
Sbjct: 109 WFDNL 113

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 46.5 bits (109), Expect = 7e-07
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 61  CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 110
            S  +   ++  F   ++    Y F A ++  +  W+ A+  A     + 
Sbjct: 80  QSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAK 129

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---HANMRTYYFAADTRESMIQWMNA 99
                   + L   +++P  +     +KF+ K        M   +   D  +    WM A
Sbjct: 87  SSGTPAHQMNLRGCEVTPDVNISG--QKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAA 144

Query: 100 LSLASILQ 107
             LAS  +
Sbjct: 145 CRLASKGK 152

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 43  EEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 100
           +    +  + +     ++  +S +K   KF+               +  ES  +W   +
Sbjct: 53  KSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK---EEVQLKTENTESGEEWRGFI 108

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 43  EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTY---YFAADTRESMIQWMN 98
            ++       L ++ ++ C     +  R  +F        T     F  +T E   +W  
Sbjct: 44  PQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTT 103

Query: 99  ALSLAS 104
           A+   +
Sbjct: 104 AIQTVA 109

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 44  EEKLLGSILLPSYKI----SPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 99
           ++   G I +   K                K+ F+  H    T Y  A + +S   W+  
Sbjct: 57  KKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKK 115

Query: 100 LSLA 103
           L   
Sbjct: 116 LKEE 119

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 23  YLLLATHVMVFSPEISGLGFEEEKLLGSIL-----LPSYKISPCSSDDKVFRKFSFKAEH 77
           +  +A   + FS +I     EE+  LGS+      L +Y +       K  + F F  E 
Sbjct: 32  FCAIADAKLSFSDDIE-QTMEEDNPLGSLCRGILDLNTYNVVKAP-QGKNQKSFVFILEP 89

Query: 78  ANM--RTYYFAADTRESMIQWMNAL 100
                    FA D  E + +W  ++
Sbjct: 90  KQQGDPPVEFATDKVEELFEWFQSI 114

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVF-------------RKFSFKAEH------ANMRTY 83
           +  + +G++LL + +I    S    F                  K E           +Y
Sbjct: 42  KNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSY 101

Query: 84  Y-FAADTRESMIQWMNALSLASILQNSSTG 112
               A +      WM+AL LA +    S+G
Sbjct: 102 LIIRATSESDGRCWMDALELA-LKSGPSSG 130

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 6/65 (9%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 49  GSILLPSYKISPCSSDDKVFRKFSFKAE-HANMRTYYFAADTRESMIQWMNAL--SLASI 105
            ++ + +  +     +D   R++ F+       ++    A++++   +W+  +      I
Sbjct: 321 LAMDIDNCSVMAVDCED---RRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQI 377

Query: 106 LQNSS 110
             + +
Sbjct: 378 YLSEN 382

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL-- 100
              +    + L + ++ P +       K SF     + RTY+F A+  +  + W++ L  
Sbjct: 45  TSNRQPAKLNLLTCQVKPNAE-----DKKSFDLIS-HNRTYHFQAEDEQDYVAWISVLTN 98

Query: 101 SLASILQNSSTG 112
           S    L  + +G
Sbjct: 99  SKEEALTMAFSG 110

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 20  HNVYLLLATHVMVFSPEISGLGFEEEKL----LGSILLPSYKISPCSSDDKVFRKFSFKA 75
              +++L+   +++    S  G + +         + +  + +      +       F+ 
Sbjct: 25  TRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEH---PDIFQL 81

Query: 76  EHANM-RTYYFAADTRESMIQWMNALSLAS 104
            + +    Y F   +R   I W   L  A 
Sbjct: 82  NNPDKGNVYKFQTGSRFHAILWHKHLDDAC 111

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 10/89 (11%)

Query: 23  YLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFR---KFSFKAEHAN 79
           Y+ L    +  S +  G       L     L    I    +  K +          +   
Sbjct: 152 YVCLRRSGLYCSTK--GTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNK 209

Query: 80  MRT-----YYFAADTRESMIQWMNALSLA 103
           +R          A+  ++   WM A  L 
Sbjct: 210 VRNETKELRLLCAEDEQTRTSWMTAFRLL 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.93
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.92
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.91
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.91
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.91
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.9
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.9
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.9
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.9
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.89
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.89
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.89
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.89
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.89
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.89
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.89
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.88
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.88
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.88
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.88
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.88
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.88
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.88
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.87
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.87
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.87
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.86
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.86
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.86
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.86
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.86
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.86
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.85
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.85
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.85
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.85
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.85
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.85
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.85
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.85
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.85
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.84
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.84
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.83
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.83
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.83
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.83
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.83
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.82
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.82
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.82
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.82
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.81
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.8
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.77
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.77
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.77
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.76
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.75
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.75
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.73
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.69
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.68
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.68
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.57
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.56
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.54
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.38
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.26
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.97
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.89
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.77
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.76
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	98.56
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.54
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.53
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.52
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.33
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.33
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	98.26
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	98.12
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.1
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	98.04
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	98.04
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.97
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	97.95
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	97.95
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.88
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.86
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.85
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.78
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.72
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.71
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.65
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.6
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.59
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	97.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.43
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.96
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	96.11
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	95.57
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	94.95
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	87.82
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	85.54
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	82.36

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.93  E-value=4.8e-26  Score=167.28  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=85.3

Q ss_pred             CCccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCC----CCccCccceEEEcCCeEEEecCC-CCccCceeeEEE
Q psy407            1 MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGL----GFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKA   75 (160)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk----~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i   75 (160)
                      |||.|+|.....+ +.|.||||||||++.+|||     |+    ++.+.+|.|.|.|.+|+|..+.+ .+..+++|+|+|
T Consensus         8 ~~~~G~L~KqG~~-~~K~WKrRwFVL~~~~LyY-----fk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~   81 (126)
T 1wi1_A            8 MKHSGYLWAIGKN-VWKRWKKRFFVLVQVSQYT-----FAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNA   81 (126)
T ss_dssp             EEEEEEEEEECSS-SCCSCEEEEEEEEEEETTE-----EEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEE
T ss_pred             CceeEEEEEeCCC-cccccceEEEEEeCCEEEE-----EEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEE
Confidence            5899999877543 5599999999999999999     99    88899999999999999987633 233478999999


Q ss_pred             eeCCceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           76 EHANMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        76 ~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .+++ ++|+|+|+|++||.+||.||..|+..
T Consensus        82 v~~~-~ty~~~Adseee~~~WikAi~~A~~~  111 (126)
T 1wi1_A           82 VKEG-DTVIFASDDEQDRILWVQAMYRATGQ  111 (126)
T ss_dssp             ECSS-CEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             ecCC-ceEEEEcCCHHHHHHHHHHHHHHhcc
Confidence            9875 57999999999999999999999743

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=3.4e-25  Score=159.63  Aligned_cols=98  Identities=22%  Similarity=0.318  Sum_probs=82.3

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCC---eEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATH---VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~---~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      ..|+|... ++  .+.|+||||||+++   +|||     |+++++.+|.|.|+|.||+|..+.+.+..+++|+|+|.++ 
T Consensus        10 ~~G~L~k~-~~--~~~WkkrWfVL~~~~~~~Ly~-----Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~-   80 (112)
T 2coc_A           10 LCGPLRLS-ES--GETWSEVWAAIPMSDPQVLHL-----QGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWA-   80 (112)
T ss_dssp             SEEEEEEE-SS--SSCEEEEEEECCTTCTTCEEE-----ECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEET-
T ss_pred             EEEEEEec-CC--CCCceEEEEEEECCCccEEEE-----ECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEecC-
Confidence            34666663 33  78999999999984   8999     9999999999999999999986544333468999999976 


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      .++|+|+|+|+++|++||.+|+.|+.+..+
T Consensus        81 ~~~y~f~A~s~e~~~~Wl~al~~A~~~~~~  110 (112)
T 2coc_A           81 KQSWYLSASSAELQQQWLETLSTAAHSGPS  110 (112)
T ss_dssp             TEEEEEEESSHHHHHHHHHHHHHHHSCCSS
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHhcCCCC
Confidence            579999999999999999999999866544

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=3.2e-24  Score=157.97  Aligned_cols=95  Identities=21%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc--
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM--   80 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~--   80 (160)
                      ..|+|..   ++..+.|+||||||++++|+|     |+++++..|+|.|+|.+|+|.....   .+++|+|+|.++..  
T Consensus        10 k~GwL~K---~g~~k~WkrRWfVLk~~~L~y-----yk~~~~~~p~G~I~L~~~~v~~~~~---~~~~~~F~i~~~~~~~   78 (130)
T 1v88_A           10 MADWLKI---RGTLKSWTKLWCVLKPGVLLI-----YKTQKNGQWVGTVLLNACEIIERPS---KKDGFCFKLFHPLEQS   78 (130)
T ss_dssp             EEEEEEE---CCSSSSCEEEEEEEETTEEEE-----ESCSSSCCCCEEEECSSCEECCCCT---TTSSCEEEEECTTCCC
T ss_pred             EEeEEEE---eCCCCCceEEEEEEECCEEEE-----ECCCCCCCceEEEEcCCCEEEECCC---CCCCeEEEEEcCCccc
Confidence            4566654   448899999999999999999     9999999999999999999855433   25679999987643  


Q ss_pred             ---------------------eEEEEEcCCHHHHHHHHHHHHHhHhhcc
Q psy407           81 ---------------------RTYYFAADTRESMIQWMNALSLASILQN  108 (160)
Q Consensus        81 ---------------------r~~~l~Aese~e~~~Wi~aL~~a~~~~~  108 (160)
                                           ++|+|+|+|++|+++||+||+.|+....
T Consensus        79 i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~  127 (130)
T 1v88_A           79 IWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP  127 (130)
T ss_dssp             CSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred             cccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence                                 3499999999999999999999975443

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.91  E-value=1.6e-23  Score=147.45  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      ++.|+|..  ...+.+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.+....+.  .+++++|+|.+++.+
T Consensus         9 ~~~G~L~K--~~~~~~~Wk~RwfvL~~~~L~y-----yk~~~~~~~~~~i~L~~~~~~~~~~~--~~~~~~F~i~~~~~~   79 (109)
T 1wgq_A            9 TMSGYLYR--SKGSKKPWKHLWFVIKNKVLYT-----YAASEDVAALESQPLLGFTVTLVKDE--NSESKVFQLLHKGMV   79 (109)
T ss_dssp             SCEEEEEE--ESSTTSCCEEEEEEEETTEEEE-----ESCTTCSSCSEEEECSSEEEEECCCS--SCSSSEEEEEETTEE
T ss_pred             eEEEEEEe--CCCCCCCceeEEEEEeCCEEEE-----ECCCCcCccCceEECCCCEEEECCCC--CCCCcEEEEEeCCCe
Confidence            45677774  3556789999999999999999     99999999999999999998776543  256799999988778


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           82 TYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      +|+|+|+|++|+.+||++|+.|+...
T Consensus        80 ~~~~~a~s~~e~~~Wi~al~~a~~~~  105 (109)
T 1wgq_A           80 FYVFKADDAHSTQRWIDAFQEGTVSG  105 (109)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999997443

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.8e-25  Score=165.78  Aligned_cols=104  Identities=16%  Similarity=0.245  Sum_probs=86.3

Q ss_pred             EEEEec-CCCCCCceEEEEEEeCCeEEEcccCCCCCCccC--ccceEEEcCCeEEEecCCCCccCceeeEEEeeC---Cc
Q psy407            7 LIILND-NMASTLCHNVYLLLATHVMVFSPEISGLGFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---NM   80 (160)
Q Consensus         7 ~~~~~~-~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~--~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~---~~   80 (160)
                      |-+++- +...|.||+|||||+++.|+|     ||++++.  +|.|.|+|+||+|++....  .+++|+|++..|   ++
T Consensus        15 l~~~~pkk~tlK~~KrrWFvlk~~~L~Y-----yK~kee~~~ePig~I~L~gceV~pd~~~--~~~kf~ikl~iPs~~g~   87 (137)
T 2ys3_A           15 LRIFRPRKLTLKGYRQHWVVFKETTLSY-----YKSQDEAPGDPIQQLNLKGCEVVPDVNV--SGQKFCIKLLVPSPEGM   87 (137)
T ss_dssp             CEECCTTSCCSSSSCCCEEEECSSCEEE-----ESSTTTTTSCCSCCBCTTTCEEEECCBG--GGTBEEEEEEEECSSSE
T ss_pred             HHhhCccccccccceeEEEEEeCCEEEE-----ECCchhccCCCceEEECCCCEEeccccc--cCCceEEEEEccCCCCc
Confidence            344443 556789999999999999999     9988885  8999999999999886322  367999998765   56


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhHhhccCCCcccccccccC
Q psy407           81 RTYYFAADTRESMIQWMNALSLASILQNSSTGWEDRRLNNE  121 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~~~~~~~~~~~~~~~~~~  121 (160)
                      ++|+|.|+|++++++||+||+.|++++.+    ++.++.+|
T Consensus        88 r~y~l~cdsEeqy~~WMaA~rlAskgktm----a~~sy~~e  124 (137)
T 2ys3_A           88 SEIYLRCQDEQQYARWMAGCRLASKGRTM----ADSSYTSE  124 (137)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHTSCCT----TSTHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHHhccCcch----hhhhhHHH
Confidence            99999999999999999999999999888    44455555

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.90  E-value=3e-24  Score=163.41  Aligned_cols=106  Identities=19%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEe-cCCCCccCceeeEEEeeC---CceEEEEE
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEHA---NMRTYYFA   86 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~-~~~~~~~~~~~~F~i~~~---~~r~~~l~   86 (160)
                      +-..|.||+||||+++..|+|     ||++++  ..|.|.|+|+||+|++ ++..   +.+|.|++..|   +++.|||+
T Consensus        60 ~~tLKgyKryWFv~kd~~Lsy-----YKskEe~~geP~~~I~LrGCEVtpDVnva---~~Kf~IkL~vP~~~gm~e~~Lr  131 (173)
T 4f7h_A           60 KLTLKGYKQYWCTFKDTSISC-----YKSKEESSGTPAHQMNLRGCEVTPDVNIS---GQKFNIKLLIPVAEGMNEIWLR  131 (173)
T ss_dssp             TTBCCCCEEEEEEEETTEEEE-----ESCGGGCSSCCSEEEECTTCEEEEEEETT---TTEEEEEEEEEETTEEEEEEEE
T ss_pred             hcccccceeEEEEEeCCEEEE-----EcCHhHhcCCCceEEecCceEEecccccc---ccceeEEEeccCCCCcceeeee
Confidence            566889999999999999999     999998  7899999999999988 4443   67888888665   78999999


Q ss_pred             cCCHHHHHHHHHHHHHhHhhccCCCcccccccccC-CCCCCCCCc
Q psy407           87 ADTRESMIQWMNALSLASILQNSSTGWEDRRLNNE-DNDSGFHGT  130 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~~  130 (160)
                      |+|++++.+||+||+.|++++++    +|.++.+| +++..+..|
T Consensus       132 cd~E~qya~WMAAcrLAskGktm----Adssy~~Ev~~i~~~L~m  172 (173)
T 4f7h_A          132 CDNEKQYAHWMAACRLASKGKTM----ADSSYNLEVQNILSFLKM  172 (173)
T ss_dssp             ESSHHHHHHHHHHHHHHHTTCCT----TSTHHHHHHHHHHHHTSC
T ss_pred             cCCHHHHHHHHHHhhhhccCCcc----ccccchHHHHHHHHHHcc
Confidence            99999999999999999999988    66666655 444444444

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=7.7e-23  Score=144.78  Aligned_cols=101  Identities=29%  Similarity=0.516  Sum_probs=85.6

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      +.|+|.... ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+...+..+++|+|.|.+++.++
T Consensus        13 ~~G~L~K~~-~~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~   86 (117)
T 2d9y_A           13 KAGWLFKQA-SSGVKQWNKRWFVLVDRCLFY-----YKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRT   86 (117)
T ss_dssp             EEEEEEEEC-TTSSSCEEEEEEEEETTEEEE-----ESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCE
T ss_pred             EEEEEEEeC-CCCCCCceEEEEEECCCEEEE-----ECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcE
Confidence            557766543 235789999999999999999     99999999999999999998777554445788999998777799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           83 YYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      |+|+|+|++|+.+||.+|+.|+..+.+
T Consensus        87 ~~l~a~s~~e~~~Wi~al~~~~~~~~~  113 (117)
T 2d9y_A           87 YFFSAESPEEQEAWIQAMGEAARVQSG  113 (117)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTCCTTC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999866554

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.90  E-value=1.8e-24  Score=163.22  Aligned_cols=109  Identities=20%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEe-cCCCCccCceeeEEEeeC---CceEEEEE
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEHA---NMRTYYFA   86 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~-~~~~~~~~~~~~F~i~~~---~~r~~~l~   86 (160)
                      +-..|.||+||||++|..|+|     ||++++  ..|.+.|+|+||+|.+ |+..   +.+|.|++..+   ++.++||+
T Consensus        39 rltLKgfKryWfv~kDt~Lsy-----YKSkEe~~geP~~~inLrGCEVtPDVnva---~~Kf~ikL~ip~~~gm~e~~Lr  110 (165)
T 4bbk_A           39 KLMLKACKQYWFVFKDTSIAY-----FKNKELEQGEPIEKLNLRGCEIVPDVNVS---GRKFGIKLLIPVADGMNEVYLR  110 (165)
T ss_dssp             -----CCEEEEEEEETTEEEE-----ESSGGGTTSCCSEEEECTTCEEEEEEETT---TTEEEEEEEEEETTEEEEEEEE
T ss_pred             ccccccceeEEEEEeCCEEEE-----EcCHHHhcCCCceEEecCccEEecccccc---cceeeEEEecCCCCcceeeeee
Confidence            566889999999999999999     999998  7899999999999987 5543   67999998654   67899999


Q ss_pred             cCCHHHHHHHHHHHHHhHhhccCCCcccccccccC-CCCCCCCCcCCC
Q psy407           87 ADTRESMIQWMNALSLASILQNSSTGWEDRRLNNE-DNDSGFHGTYGR  133 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~  133 (160)
                      |+||+++.+||+||+.|++++++    +|.++.+| +++.++..||++
T Consensus       111 cdsE~QYa~WMAAcrLAskGkTm----ADsSy~sEv~~il~fL~mq~~  154 (165)
T 4bbk_A          111 CDHEDQYARWMAACILASKGKTM----ADSSYQPEVISILSFLKMKNR  154 (165)
T ss_dssp             ESSHHHHHHHHHHHHHHHTTCCT----TSTTHHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHhhhcccccch----hhhhhhHHHHHHHHHHhccCC
Confidence            99999999999999999999988    67777777 677888889885

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.90  E-value=7.5e-23  Score=149.78  Aligned_cols=98  Identities=22%  Similarity=0.288  Sum_probs=78.3

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEe---CCeEEEcccCCCCC----CccCccceEEEcCC-eEEEecCCCCccCceeeEE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLA---THVMVFSPEISGLG----FEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFK   74 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~---~~~L~y~~~~yYk~----~~e~~~~g~I~L~~-~~V~~~~~~~~~~~~~~F~   74 (160)
                      +.|+|..-. ....+.||||||||+   +..|+|     |++    +.+.+++|.|+|.. ++|..+......+++|+|.
T Consensus        17 ~~G~L~K~g-~~~~k~WkrRwFvL~~~~~~~L~Y-----~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~   90 (126)
T 1v5p_A           17 ICGFLDIED-NENSGKFLRRYFILDTQANCLLWY-----MDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFV   90 (126)
T ss_dssp             EECCEEEEC-TTCSSCEEEEEEEEETTTTEEEEE-----SSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEE
T ss_pred             eEEEEEEeC-CCCCCCccceEEEEecCCCCEEEE-----ECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEE
Confidence            347766543 345789999999999   668888     999    56789999999998 5787765333346789998


Q ss_pred             EeeCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           75 AEHANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        75 i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      |.+ ..|+|+|+|+|++||++||++|+.|+...
T Consensus        91 i~t-~~r~y~l~A~s~~e~~~Wi~al~~a~~~~  122 (126)
T 1v5p_A           91 INA-LSQRYFLQANDQKDLKDWVEALNQASKSG  122 (126)
T ss_dssp             EEC-SSCEEEEECSSHHHHHHHHHHHHHTTTTS
T ss_pred             EEC-CCEEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            865 56999999999999999999999997554

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.89  E-value=3.8e-23  Score=148.72  Aligned_cols=100  Identities=37%  Similarity=0.621  Sum_probs=85.2

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      +.|+|..... ...+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+...+..+++|+|.|.+++.++
T Consensus        23 ~~G~L~K~~~-~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~   96 (128)
T 2dkp_A           23 RRGWLYKQDS-TGMKLWKKRWFVLSDLCLFY-----YRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRT   96 (128)
T ss_dssp             EEEEEEEECC-SSSCCEEEEEEEEETTEEEE-----ESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCC
T ss_pred             EEEEEEEeCC-CCCCCceeEEEEEeCCEEEE-----ECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCE
Confidence            5677765433 25788999999999999999     99999999999999999998876543334788999999877789


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhhcc
Q psy407           83 YYFAADTRESMIQWMNALSLASILQN  108 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~~~  108 (160)
                      |+|+|+|++|+++||.+|+.|+..+.
T Consensus        97 ~~l~a~s~~e~~~Wi~al~~a~~~~~  122 (128)
T 2dkp_A           97 YYFCTDTGKEMELWMKAMLDAALVQT  122 (128)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999987554

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=7.2e-23  Score=146.15  Aligned_cols=98  Identities=29%  Similarity=0.518  Sum_probs=83.1

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      +.|+|.... ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+...+..+++|+|.|.+++.++
T Consensus        24 ~~G~L~K~~-~~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~   97 (122)
T 2yry_A           24 KAGWLFKQA-SSGVKQWNKRWFVLVDRCLFY-----YKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRT   97 (122)
T ss_dssp             EEEEEEEEC-CSSSCCEEEEEEEEETTEEEE-----ESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCE
T ss_pred             EEEEEEEEC-CCCCCCcEEEEEEEeCCEEEE-----ECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcE
Confidence            456666443 235689999999999999999     99999999999999999988777544445788999998777799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           83 YYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      |+|+|+|++|+.+||.+|+.|+..
T Consensus        98 ~~l~a~s~~e~~~Wi~al~~a~~~  121 (122)
T 2yry_A           98 YFFSAESPEEQEAWIQAMGEAARV  121 (122)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999754

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.89  E-value=6.8e-23  Score=146.44  Aligned_cols=86  Identities=13%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEE--ecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKIS--PCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~--~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      +.+.||+|||||++++|+|     |+++++..|.|.|+|.++.+.  ....  ..+++|+|+|.+++.++|+|+|+|++|
T Consensus        16 ~~k~Wk~rwfvL~~~~L~~-----yk~~~~~~p~~~i~l~~~~~~~~~~~~--~~~r~~~F~l~~~~~~~y~f~A~s~ee   88 (112)
T 3cxb_B           16 GKEHWKTCFVVLSNGILYQ-----YPDRTDVIPLLSVNMGGEQCGGCRRAN--TTDRPHAFQVILSDRPCLELSAESEAE   88 (112)
T ss_dssp             SCCCCEEEEEEEETTEEEE-----ESSSSCCSCSEEEETTC-CEEEEEECC--CSSCTTEEEEEETTSCCEEEECSSHHH
T ss_pred             CCCCceEEEEEEECCEEEE-----ECCCCCCCccceEEecCCEEEeeeccC--CCCCCeEEEEEcCCCCEEEEEcCCHHH
Confidence            5788999999999999999     999999999999999986554  2222  237899999998777899999999999


Q ss_pred             HHHHHHHHHHhHhhc
Q psy407           93 MIQWMNALSLASILQ  107 (160)
Q Consensus        93 ~~~Wi~aL~~a~~~~  107 (160)
                      |++||++|+.|+...
T Consensus        89 ~~~Wi~ai~~~~~~~  103 (112)
T 3cxb_B           89 MAEWMQHLCQAVSKG  103 (112)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999999987543

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.89  E-value=7.3e-23  Score=149.61  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=78.1

Q ss_pred             EecCCCCCC-ceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc-------e
Q psy407           10 LNDNMASTL-CHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-------R   81 (160)
Q Consensus        10 ~~~~~~~k~-WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~-------r   81 (160)
                      .++.+..+. ||+|||||++.||+|     ||++++.+++|.|+|.++.|..+.+. ...++|+|+|.+++.       +
T Consensus        20 k~~~g~~k~~wk~rWFVLt~~~L~y-----yKd~~eke~~G~IpL~~~~vr~v~~~-~~~rk~~F~l~~~d~r~v~~~h~   93 (125)
T 1dyn_A           20 INNIGIMKGGSKEYWFVLTAENLSW-----YKDDEEKEKKYMLSVDNLKLRDVEKG-FMSSKHIFALFNTEQRNVYKDYR   93 (125)
T ss_dssp             ESCCCGGGTSSEEEEEEEESSEEEE-----ESSTTCSCEEEEEECTTEEEEECCSC-SSSSCEEEEEEETTSSCSSTTCS
T ss_pred             EecCccccCCceeeEEEEeccceee-----ecCCcccccceEEECCCceEeccCCC-CCCCceEEEEECCCCccccccce
Confidence            344567775 999999999999999     99999999999999999999887653 237899999998753       5


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|.|+|+|.+||.+||++|.+|.
T Consensus        94 ~y~LsA~t~ee~~~Wi~s~~ra~  116 (125)
T 1dyn_A           94 QLELACETQEEVDSWKASFLRAG  116 (125)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCc
Confidence            99999999999999999998875

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=1.1e-22  Score=143.22  Aligned_cols=91  Identities=16%  Similarity=0.216  Sum_probs=79.1

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc-CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE-EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM   80 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~   80 (160)
                      ++.|+|...    ..+.|++|||||+++.|+|     |+++.+ ..+.+.|+|.+|.|.....   .+++|+|+|.+++.
T Consensus         9 ~~~G~L~K~----~~k~Wk~RwfvL~~~~L~y-----yk~~~~~~~~~~~i~l~~~~v~~~~~---~~~~~~F~i~~~~~   76 (107)
T 2cof_A            9 ETSSYLNVL----VNSQWKSRWCSVRDNHLHF-----YQDRNRSKVAQQPLSLVGCEVVPDPS---PDHLYSFRILHKGE   76 (107)
T ss_dssp             TTCCEEEEE----ETTEEEEEEEEECSSCEEE-----ECSSTTCSEEEEEECTTTCEEECCCB---TTBSCEEEEEETTE
T ss_pred             cEeEEEEEe----cCCCcceEEEEEECCEEEE-----EeCCcccCCCeeEEeccceEEEECCC---CCCCeEEEEEeCCC
Confidence            577888876    6789999999999999999     998864 5677888889998877643   36789999998878


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           81 RTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ++|+|+|+|++|+.+||.+|+.|+
T Consensus        77 r~~~l~A~s~~e~~~Wi~al~~~~  100 (107)
T 2cof_A           77 ELAKLEAKSSEEMGHWLGLLLSES  100 (107)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999986

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.89  E-value=1.9e-22  Score=144.11  Aligned_cols=98  Identities=37%  Similarity=0.542  Sum_probs=83.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      +.|+|.... ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+......+++|+|.|.+++.++
T Consensus        13 ~~G~L~K~~-~~~~~~WkkR~fvL~~~~L~y-----y~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~   86 (123)
T 1upq_A           13 IRGWLHKQD-SSGLRLWKRRWFVLSGHCLFY-----YKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRT   86 (123)
T ss_dssp             EEEEEEEEC-SSSSCCEEEEEEEEETTEEEE-----ESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCC
T ss_pred             EEEEEEeeC-CCCCCCceeEEEEEeCCEEEE-----ECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeE
Confidence            457776654 235689999999999999999     99999999999999999999887543334689999999877789


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           83 YYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      |+|+|+|++|+.+||.+|+.|+..
T Consensus        87 ~~l~a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           87 YVLAADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999754

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=5.4e-22  Score=140.20  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      +.|+|..  .....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.+...... ..+++|+|+|.+++.++
T Consensus         7 ~~G~L~K--~g~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~~~~~~~~-~~~~~~~F~i~~~~~r~   78 (113)
T 1pls_A            7 REGYLVK--KGSVFNTWKPMWVVLLEDGIEF-----YKKKSDNSPKGMIPLKGSTLTSPCQD-FGKRMFVFKITTTKQQD   78 (113)
T ss_dssp             EEEEEEE--ESSSSSCCEEEEEEEETTEEEE-----ESSTTCSSCSEEEESSSCCEESSCCS-SCCSSSEEEEEETTTEE
T ss_pred             EEEEEEE--eCCCCCCceEEEEEEECCEEEE-----EeCCCCCCcceEEEcCCCEEEEecCC-CCCCccEEEEEcCCCCE
Confidence            4577753  3446789999999999999999     99998899999999999987652221 23678999999887799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           83 YYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      |+|+|+|++|+.+||.+|+.|+.....
T Consensus        79 ~~l~a~s~~e~~~Wi~ai~~~~~~~~~  105 (113)
T 1pls_A           79 HFFQAAFLEERDAWVRDINKAIKCIEG  105 (113)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhccch
Confidence            999999999999999999999865543

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=4.2e-22  Score=140.72  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=81.1

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeC----
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA----   78 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~----   78 (160)
                      +.|+|...  ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+.......++|+|+|.++    
T Consensus        10 ~~G~L~K~--g~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~   82 (118)
T 1v89_A           10 KMGWLKKQ--RSIVKNWQQRYFVLRAQQLYY-----YKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQ   82 (118)
T ss_dssp             EEEEEEEE--CSSSSCEEEEEEEEETTEEEE-----ESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSS
T ss_pred             EEEEEEec--CCCCCCccEEEEEEECCEEEE-----EeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCcccc
Confidence            56777654  345678999999999999999     9999999999999999999876543323367899999873    


Q ss_pred             ---CceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           79 ---NMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        79 ---~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                         ..++|+|+|+|++|+.+||.+|+.|+.
T Consensus        83 ~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           83 NRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence               568999999999999999999999974

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=3.4e-22  Score=138.97  Aligned_cols=98  Identities=12%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             ccceEEEEecCCC--CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNMA--STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~~--~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|.....+.+  .+.|++|||||+++.|+|     |+++.+..|.|.|+|.+|.|..++. ....+++|+|.|.+++
T Consensus         5 ~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~   79 (108)
T 1u5d_A            5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYY-----YANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQD   79 (108)
T ss_dssp             EEEEEEEEEECSSSSCEEEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSS
T ss_pred             EEEEEEEcCCCCCccccCceeeEEEEeCCEEEE-----ecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCC
Confidence            5678877766543  289999999999999999     9999999999999999999877532 1123678999999877


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .++|+|+|+|++|+.+||.+|+.|+.
T Consensus        80 ~r~~~l~a~s~~e~~~Wi~ai~~~i~  105 (108)
T 1u5d_A           80 RRTYEFTATSPAEARDWVDQISFLLK  105 (108)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999864

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.88  E-value=3.2e-22  Score=146.29  Aligned_cols=97  Identities=11%  Similarity=0.103  Sum_probs=78.3

Q ss_pred             CccceEEEEe--cCC--CCCCceEEEEEEeCCeEEEcccCCCCCCc-----------cCccceEEEcCCeEEEecCCCCc
Q psy407            2 DHVCFLIILN--DNM--ASTLCHNVYLLLATHVMVFSPEISGLGFE-----------EEKLLGSILLPSYKISPCSSDDK   66 (160)
Q Consensus         2 ~~~~~~~~~~--~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~-----------e~~~~g~I~L~~~~V~~~~~~~~   66 (160)
                      ++.|+|..-+  +.+  ..+.|++|||||+++.|+|     ||++.           +..|.|.|+|.+|.|..+.+  .
T Consensus        13 ~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~y-----ykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~--~   85 (129)
T 2p0d_A           13 EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVF-----YREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRH--L   85 (129)
T ss_dssp             EEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEE-----ESCC--------------CCSEEEECTTCEEEECTT--S
T ss_pred             eEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEE-----EcCcccccccccccccCCCCccEEEeCCcEEEECCC--C
Confidence            3567776521  111  2389999999999999999     99984           56899999999999877533  2


Q ss_pred             cCceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           67 VFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        67 ~~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .+++|+|+|.+++.++|+|+|+|++||++||.+|+.|+.
T Consensus        86 ~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~  124 (129)
T 2p0d_A           86 SSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE  124 (129)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            478899999988778999999999999999999999874

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=3.2e-22  Score=143.58  Aligned_cols=96  Identities=14%  Similarity=0.165  Sum_probs=81.4

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCC--eEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATH--VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~--~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      ++.|+|.....+...+.||+|||||+++  .|+|     |+++.+..++|.|+|.++.+.....    .++++|+|.++ 
T Consensus         9 ~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Y-----y~~~~~~~~~g~I~L~~~~~~~~~~----~~~~~F~i~~~-   78 (119)
T 2dhk_A            9 KLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYY-----SRTAQDANPLDSIDLSSAVFDCKAD----AEEGIFEIKTP-   78 (119)
T ss_dssp             CCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEE-----ESSTTCCSCSEEEEGGGCEEEECTT----GGGCEEEEECS-
T ss_pred             cEEEEEEecCCCCCCCCceeEEEEEECCccEEEE-----ECCCCCcccccEEECCCCEEEecCC----CCCCEEEEEeC-
Confidence            4677877665545678999999999998  9999     9999998999999999988765322    56789999876 


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .|+|+|+|+|++|+++||.+|+.|+...
T Consensus        79 ~r~~~l~a~s~~e~~~Wi~al~~~~~~~  106 (119)
T 2dhk_A           79 SRVITLKAATKQAMLYWLQQLQMKRWEF  106 (119)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999997543

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.88  E-value=6.5e-22  Score=141.63  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=81.4

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC--
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--   79 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~--   79 (160)
                      ++.|+|...  ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+...   +++++|.|.+++  
T Consensus         6 ~~~G~L~K~--g~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~---~~~~~f~i~~~~~~   75 (127)
T 1fgy_A            6 DREGWLLKL--GGRVKTWKRRWFILTDNCLYY-----FEYTTDKEPRGIIPLENLSIREVLDP---RKPNCFELYNPSHK   75 (127)
T ss_dssp             SEEEEEEEE--CSSSCCEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEEECCS---SCSSEEEEECSSST
T ss_pred             ceEeEEEEE--CCCCCCeEEEEEEEECCEEEE-----eCCCCCCCcceEEECCceEEEEccCC---CCCceEEEecCCcc
Confidence            567888655  445788999999999999999     99998899999999999998877542   678999998653  


Q ss_pred             -------------------ceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           80 -------------------MRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        80 -------------------~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                                         .++|+|+|+|++|+.+||.+|+.|+..
T Consensus        76 ~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  121 (127)
T 1fgy_A           76 GQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             TCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence                               369999999999999999999998743

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.88  E-value=7.6e-22  Score=138.01  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=78.2

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCC--eEEEcccCCCCCCccCccceEEEcCCeEEEecCCCC---ccCceeeEEEee
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATH--VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDD---KVFRKFSFKAEH   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~--~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~---~~~~~~~F~i~~   77 (160)
                      +.|+|...  ....+.|++|||||+++  .|+|     |+++.+..|.|.|+|.+|.|..+....   ..+++++|.|.+
T Consensus         9 ~~G~L~K~--g~~~~~Wk~R~fvL~~~~~~L~y-----yk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~   81 (109)
T 2i5f_A            9 KQGCLLKQ--GHRRKNWKVRKFILREDPAYLHY-----YDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIIT   81 (109)
T ss_dssp             EEEEEEEE--CTTTCCEEEEEEEEETTTTEEEE-----ECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEEC
T ss_pred             EEEEEEEc--CCCCCCceEEEEEEeCCCcEEEE-----ECCCCCCCccEEEECCCCEEEEccCCcccccCCCceEEEEEe
Confidence            56777653  33567899999999986  9999     999988999999999999887654310   124789999998


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ++.++|+|+|+|++|+.+||.+|+.|+
T Consensus        82 ~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           82 ADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             TTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            877889999999999999999999986

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=3.9e-22  Score=150.18  Aligned_cols=99  Identities=10%  Similarity=0.037  Sum_probs=80.7

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      ++.|+|..  ...+.+.||+|||||++++|+|     |+++.+..+.|.|+|.++++..+.... .++.++|+|.++ .+
T Consensus        19 ~keG~L~K--kg~~~k~WkrRWFvLk~~~L~Y-----yk~~~d~~~~g~I~L~~~~~~~~~~~~-~~~~~~F~I~t~-~r   89 (149)
T 1x1f_A           19 YFEGFLLI--KRSGYREYEHYWTELRGTTLFF-----YTDKKSIIYVDKLDIVDLTCLTEQNST-EKNCAKFTLVLP-KE   89 (149)
T ss_dssp             EEEEEEEE--ECTTCCSCEEEEEEEETTEEEE-----ESCSSCSSCSEECCCSSCCEEEECCCT-TSCCCEEEEECS-SC
T ss_pred             cEEEEEEE--eCCCCCCceeEEEEEcCCEEEE-----EeCCCccccCcEEECCCceEEeeccCC-CCcCcEEEEEcC-CC
Confidence            35677764  4467799999999999999999     999999999999999998765332211 145789999876 48


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           82 TYYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      +|+|+|+|++||++||.||+.++....+
T Consensus        90 ~~~f~A~s~ee~~eWi~aI~~v~~~~~p  117 (149)
T 1x1f_A           90 EVQLKTENTESGEEWRGFILTVTELSVP  117 (149)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHcccCC
Confidence            9999999999999999999998765443

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.87  E-value=2.2e-22  Score=146.16  Aligned_cols=96  Identities=17%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc---------CccceEEEcCCeEEEecCCCCccCceee
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE---------EKLLGSILLPSYKISPCSSDDKVFRKFS   72 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---------~~~~g~I~L~~~~V~~~~~~~~~~~~~~   72 (160)
                      ++.|.|....  ...+.||+|||||++++|+|     |+++.+         ..+.|.|+|.+|+|..+.+ +..+++|+
T Consensus        13 ~k~G~L~K~g--~~~k~Wk~RwfVL~~~~L~y-----yk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~-~~~~k~~~   84 (124)
T 2w2x_D           13 KQQGELYMWD--SIDQKWTRHFCAIADAKLSF-----SDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQ-GKNQKSFV   84 (124)
T ss_dssp             CCEEEEEEEE--TTTTEEEEEEEEEETTEEEE-----EEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTT-CBTTBSEE
T ss_pred             ceeEEEEEEC--CCCCCceEeEEEEECCEEEE-----EcccccccccccccCCccccEEECCCCEEEEccC-CcCCCCEE
Confidence            5778887643  46789999999999999999     997543         2358999999999988754 23478999


Q ss_pred             EEEeeCC--ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           73 FKAEHAN--MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        73 F~i~~~~--~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      |+|.+++  .++|+|+|+|++|+.+||+||+.|+.
T Consensus        85 F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~  119 (124)
T 2w2x_D           85 FILEPKQQGDPPVEFATDKVEELFEWFQSIREITW  119 (124)
T ss_dssp             EEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence            9998864  47899999999999999999999863

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.87  E-value=2.4e-22  Score=145.73  Aligned_cols=98  Identities=20%  Similarity=0.341  Sum_probs=80.9

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeE---EEecCCCCccCceeeEEE
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYK---ISPCSSDDKVFRKFSFKA   75 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~---V~~~~~~~~~~~~~~F~i   75 (160)
                      ++.|+|.......+.+.|++|||||++++|+|     |+++.+   ..|.|.|+|.+|.   |...+. +..+++|+|+|
T Consensus         6 ~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~y-----yk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~-~~~~~~~~F~i   79 (134)
T 2y7b_A            6 EERGFLTIFEDVSGFGAWHRRWCVLSGNCISY-----WTYPDDEKRKNPIGRINLANCTSRQIEPANR-EFCARRNTFEL   79 (134)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTEEEE-----ESSHHHHTTSCCSEEEEGGGBCSSSCEECCT-TTCCCTTEEEE
T ss_pred             eEEeeEEEEcCCCCCCCcEEEEEEEECCEEEE-----ECCCCcccccCceEEEEhhhCccccccccch-hhccCCCEEEE
Confidence            57899998866677889999999999999999     997655   7899999999988   444432 22468899999


Q ss_pred             ee--CC-----------------ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           76 EH--AN-----------------MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        76 ~~--~~-----------------~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .+  +.                 .++|+|+|+|++|+.+||.+|+.|+.
T Consensus        80 ~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~  128 (134)
T 2y7b_A           80 ITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV  128 (134)
T ss_dssp             EEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            86  32                 15899999999999999999999874

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.87  E-value=1.2e-21  Score=145.21  Aligned_cols=99  Identities=12%  Similarity=0.176  Sum_probs=82.4

Q ss_pred             ccceEEEEecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCC-CccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~-~~~~~~~~F~i~~~~   79 (160)
                      +.|+|.....+.  ..+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|+|..+... ...++.|+|.|.+++
T Consensus        19 ~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~y-----yk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~   93 (148)
T 1u5f_A           19 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYY-----YGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD   93 (148)
T ss_dssp             EEEEEEEECCCSSCSSCSEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTT
T ss_pred             EEEEEEEeCCCCCCcCCCceeEEEEEECCEEEE-----EcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEECCC
Confidence            567777765543  3478999999999999999     99999999999999999998765421 123567999999877


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .++|+|+|+|++|+.+||.+|+.|+..
T Consensus        94 ~r~~~l~a~s~~e~~~Wi~al~~~i~~  120 (148)
T 1u5f_A           94 KRIYQFTAASPKDAEEWVQQLKFILQD  120 (148)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred             CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999743

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.86  E-value=6.6e-22  Score=146.52  Aligned_cols=96  Identities=21%  Similarity=0.245  Sum_probs=81.8

Q ss_pred             CccceEEEEecC----CCCCCceEEEEEEeCC-----eEEEcccCCCCCCc-cCccceEEEcCCeEEEecCCCCccCcee
Q psy407            2 DHVCFLIILNDN----MASTLCHNVYLLLATH-----VMVFSPEISGLGFE-EEKLLGSILLPSYKISPCSSDDKVFRKF   71 (160)
Q Consensus         2 ~~~~~~~~~~~~----~~~k~WkkRWFVL~~~-----~L~y~~~~yYk~~~-e~~~~g~I~L~~~~V~~~~~~~~~~~~~   71 (160)
                      .+.|+|.....+    ...+.|++|||||++.     .|+|     |+++. +..|.|.|+|.+|.+.....   .+++|
T Consensus        19 ~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~y-----y~~~~~~~~~~g~I~L~~~~~~~~~~---~~~~~   90 (150)
T 1wg7_A           19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNF-----YKDEKISKEPKGSIFLDSCMGVVQNN---KVRRF   90 (150)
T ss_dssp             CCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEE-----ESSSCCSSCCSEEECTTTCCEECCCC---SSCTT
T ss_pred             eEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEE-----ECCCCCCCCcCcEEecccCEEEecCC---CCCce
Confidence            467888776543    3457899999999986     9999     99887 78899999999998876543   36789


Q ss_pred             eEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           72 SFKAEHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        72 ~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|.|.+++.++|+|+|+|++|+.+||.+|+.|+.
T Consensus        91 ~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~  124 (150)
T 1wg7_A           91 AFELKMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            9999988778999999999999999999999875

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.86  E-value=2.7e-21  Score=139.57  Aligned_cols=97  Identities=19%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCC--eEEEcccCCCCCCccCccceEEEcCCeEEEecCCC-C--ccCceeeEEEee
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATH--VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSD-D--KVFRKFSFKAEH   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~--~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~-~--~~~~~~~F~i~~   77 (160)
                      +.|+|..  .....+.|++|||||+++  +|+|     |+++.+..|.|.|+|.+|.|..+... +  ..+++++|.|.+
T Consensus        20 ~~G~L~K--~g~~~~~Wk~R~fvL~~~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~   92 (129)
T 1x05_A           20 KQGCLLK--QGHRRKNWKVRKFILREDPAYLHY-----YDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIIT   92 (129)
T ss_dssp             EEEEEEE--CCSSCCCCEEEEEEEEETTTEEEE-----ECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEEC
T ss_pred             EEEEEEe--cCCCCCCCeeEEEEEeCCCCEEEE-----ECCCCCCcceeEEEccCCEEEEccCCccccccCCCeEEEEEc
Confidence            5677765  333567899999999975  8999     99998899999999999998775432 1  124789999998


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      ++.++|+|+|+|++|+.+||.+|+.|+..
T Consensus        93 ~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           93 ADEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             TTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence            87788999999999999999999999753

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.86  E-value=2.1e-21  Score=133.35  Aligned_cols=91  Identities=18%  Similarity=0.270  Sum_probs=75.8

Q ss_pred             CCccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeC
Q psy407            1 MDHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA   78 (160)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~   78 (160)
                      ++..|+|...  ....+.||+|||||+++.|+|     |+++.+  ..+.|.|+|.+|.+....     ..+++|.|.++
T Consensus         1 V~k~G~L~K~--g~~~k~WkkR~FvL~~~~L~Y-----y~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~F~i~~~   68 (94)
T 2rsg_A            1 VERCGVLSKW--TNYIHGWQDRWVVLKNNALSY-----YKSEDETEYGCRGSICLSKAVITPHD-----FDECRFDISVN   68 (94)
T ss_dssp             CCEEEEEEEE--SSSTTCEEEEEEEEETTEEEE-----ESSTTGGGTCCSEEEETTTCEEEECS-----SCSSEEEEEET
T ss_pred             CCEEEEEEEe--CCCCCCceEEEEEEECCEEEE-----EEecccccccceeeEecceeeeecCc-----ccceeEEEEeC
Confidence            3567887653  456789999999999999999     987765  458999999999876643     34679999886


Q ss_pred             CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           79 NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        79 ~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                       .++|+|+|+|++|+++||+||++|.
T Consensus        69 -~r~~~l~A~s~~e~~~Wi~aLq~Ak   93 (94)
T 2rsg_A           69 -DSVWYLRAQDPDHRQQWIDAIEQHK   93 (94)
T ss_dssp             -TEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred             -CeEEEEECCCHHHHHHHHHHHHhhc
Confidence             4899999999999999999999873

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.86  E-value=3.8e-21  Score=139.88  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=74.9

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc---cCccceEEEcCCeEEEecCCCCc------cCceeeE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE---EEKLLGSILLPSYKISPCSSDDK------VFRKFSF   73 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~---e~~~~g~I~L~~~~V~~~~~~~~------~~~~~~F   73 (160)
                      +.|+|..  +....+.|++|||||++++|+|     ||+++   +..|+|+|+|.+|+|..+..++.      ..+.+.|
T Consensus         8 k~G~L~K--k~~~~k~W~~rwfVL~~~~L~y-----yK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F   80 (120)
T 4a6h_A            8 KSGFLER--RSKFLKSYSKGYYVLTPNFLHE-----FKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKF   80 (120)
T ss_dssp             EEEEEEE--EETTTTEEEEEEEEECSSEEEE-----ESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEE
T ss_pred             EEEEEEE--cCCCCCCCccEEEEEeCCEEEE-----EcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEE
Confidence            3466654  3336789999999999999999     99875   56699999999999988654321      0156778


Q ss_pred             EEeeCC------ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           74 KAEHAN------MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        74 ~i~~~~------~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .|...+      .++|+|+|+|.+||++||++|+.++
T Consensus        81 ~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           81 VLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             EEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            877654      3699999999999999999999986

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=2.1e-21  Score=141.60  Aligned_cols=96  Identities=13%  Similarity=0.072  Sum_probs=76.7

Q ss_pred             ccceEEEEecCCCCCCceEEEEEE-eCCeEEEcccCCCCCCccCccceEEEcCC-e-EEEe------cCCCCccCceeeE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLL-ATHVMVFSPEISGLGFEEEKLLGSILLPS-Y-KISP------CSSDDKVFRKFSF   73 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL-~~~~L~y~~~~yYk~~~e~~~~g~I~L~~-~-~V~~------~~~~~~~~~~~~F   73 (160)
                      +.|+|...  ....+.|||||||| ++++|+|     |+++.+..+.|.|.|.. | .|..      +...+..+++++|
T Consensus        10 ~~G~L~K~--g~~~k~WkkRwFVL~~~~~L~Y-----yk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F   82 (130)
T 2d9v_A           10 RGGWLWRQ--SSILRRWKRNWFALWLDGTLGY-----YHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLL   82 (130)
T ss_dssp             EEEEEEEE--CSSSCCEEEEEEEEETTTEEEE-----ESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEE
T ss_pred             EEEEEEee--cCccCCceeeEEEEccCCEEEE-----EeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcEE
Confidence            45777654  44678999999999 7999999     99998888999998863 3 3332      2222223678999


Q ss_pred             EEeeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           74 KAEHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        74 ~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|.+++.|+|+|+|+|++||++||+||+.|..
T Consensus        83 ~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           83 TVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             EEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            99987678999999999999999999999964

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=139.13  Aligned_cols=94  Identities=16%  Similarity=0.253  Sum_probs=78.8

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEe--CCeEEEcccCCCCCCccC--ccceEEEcCCeEEEecCCCCccCceeeEEEee
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLA--THVMVFSPEISGLGFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEH   77 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~--~~~L~y~~~~yYk~~~e~--~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~   77 (160)
                      .+.|+|....  ...+.||+|||||+  ++.|+|     |+++.+.  .++|.|+|.+|.|....     .++++|.|.+
T Consensus         9 ~~~G~L~K~~--~~~~~Wk~R~fvL~~~~~~L~Y-----yk~~~~~~~~~~g~I~L~~~~v~~~~-----~~~~~F~i~~   76 (120)
T 2d9x_A            9 NVYGYLMKYT--NLVTGWQYRFFVLNNEAGLLEY-----FVNEQSRNQKPRGTLQLAGAVISPSD-----EDSHTFTVNA   76 (120)
T ss_dssp             CCEEEEEEEE--ETTTEEEEEEEEECTTTCEEEE-----ESSGGGSSSCCSEEEECTTCCEECCS-----SSSSCEEECC
T ss_pred             cEEEEEEecC--CCCCCceEEEEEEECCCCEEEE-----EecCcccCCCccceEEcceEEEEecC-----CCCCEEEEEc
Confidence            4567777654  36789999999999  579999     9998874  79999999999876542     4568999998


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      ++.++|+|+|+|++|+++||.+|+.|+...
T Consensus        77 ~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~  106 (120)
T 2d9x_A           77 ASGEQYKLRATDAKERQHWVSRLQICTQHH  106 (120)
T ss_dssp             SSSCCEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            766899999999999999999999987554

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.85  E-value=3.9e-21  Score=135.53  Aligned_cols=96  Identities=10%  Similarity=0.159  Sum_probs=77.6

Q ss_pred             CccceEEEEecCCCCCCceEEEEEE-eCCeEEEcccCCCCCCccCccceEEEcCCeEEEe-----cC---CCCccCceee
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLL-ATHVMVFSPEISGLGFEEEKLLGSILLPSYKISP-----CS---SDDKVFRKFS   72 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL-~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~-----~~---~~~~~~~~~~   72 (160)
                      .+.|+|...  ....+.||+||||| .++.|+|     |+++.+..+.|.|+|....|..     +.   ..+...++++
T Consensus         6 ~~~G~L~K~--g~~~k~WkkR~fvL~~~~~L~y-----yk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~   78 (112)
T 3aj4_A            6 VKSGWLLRQ--STILKRWKKNWFDLWSDGHLIY-----YDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCM   78 (112)
T ss_dssp             SEEEEEEEE--CSSSCCEEEEEEEECTTSEEEE-----ESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred             eEEEEEEee--CCCCCCeeceEEEEeeCCEEEE-----EcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcE
Confidence            467888765  33678999999999 7889999     9999989999999998755431     11   2222245789


Q ss_pred             EEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           73 FKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        73 F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      |.|.+++.++|+|+|+|++|+.+||.+|+.|.
T Consensus        79 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           79 LQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             EEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            99998778999999999999999999999985

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.85  E-value=4.6e-21  Score=133.40  Aligned_cols=83  Identities=24%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             CCCCCceEEEEEEeCCeEEEcccCCCCCCcc----C--ccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEc
Q psy407           14 MASTLCHNVYLLLATHVMVFSPEISGLGFEE----E--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        14 ~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e----~--~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      ...+.|++|||||++++|+|     |+++.+    .  .+.+.|+|.+|.|......  .+++|+|+|.+++.++|+|+|
T Consensus        18 ~~~~~Wk~rwfvL~~~~L~y-----yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~~F~i~~~~~~~~~~~A   90 (106)
T 1btn_A           18 ASSRSWHNVYCVINNQEMGF-----YKDAKSAASGIPYHSEVPVSLKEAICEVALDY--KKKKHVFKLRLSDGNEYLFQA   90 (106)
T ss_dssp             CSCCCCEEEEEEEETTEEEE-----ESSHHHHHHTCCSSSCCCEECTTCEEEECSSC--CSSSSEEEEECTTSCEEEEEC
T ss_pred             CCCCChhEEEEEEECCEEEE-----EeCCcccccCCCCCCcceEECCCCEEEEcccc--cCCccEEEEEecCCCEEEEEC
Confidence            56788999999999999999     998874    1  3677899999988765432  368899999987779999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy407           88 DTRESMIQWMNALSLA  103 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a  103 (160)
                      +|++||.+||.+|+.|
T Consensus        91 ~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           91 KDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SSHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999999975

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.85  E-value=3.6e-21  Score=147.17  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             ccceEEEEecC---CCCCCceEEEEEEeCCeEEEcccCCCCC----CccCccceEEEcCCeE-EEecC--CCCccCce--
Q psy407            3 HVCFLIILNDN---MASTLCHNVYLLLATHVMVFSPEISGLG----FEEEKLLGSILLPSYK-ISPCS--SDDKVFRK--   70 (160)
Q Consensus         3 ~~~~~~~~~~~---~~~k~WkkRWFVL~~~~L~y~~~~yYk~----~~e~~~~g~I~L~~~~-V~~~~--~~~~~~~~--   70 (160)
                      +.|+|+.-...   .+.+.||+|||||++++|+|     |++    +.+.+++|.|+|.++. |+.+.  +....+++  
T Consensus         5 keG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Y-----yk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~   79 (169)
T 1btk_A            5 LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSY-----YEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIP   79 (169)
T ss_dssp             EEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEE-----EEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC-
T ss_pred             EEEEEEEecCCCCCcccCCCceEEEEEcCCEEEE-----EecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccc
Confidence            45777764322   34578999999999999999     998    5678999999999976 45552  11222333  


Q ss_pred             -------------------eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           71 -------------------FSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        71 -------------------~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                                         |+|+|.+++ ++|||+|+|++|+++||++|+.++..
T Consensus        80 ~~~~~~~~~~~~~i~~~~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~aI~~~i~~  133 (169)
T 1btk_A           80 RRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             --------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             cccCcccccccccccccccccEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence                               899999875 79999999999999999999999753

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=6.7e-21  Score=136.93  Aligned_cols=99  Identities=19%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             CccceEEEEec------CCCCCCceEEEEEEeCCeEEEcccCCCCCCccCc------cceEEEcCCeEEEecCCCCccCc
Q psy407            2 DHVCFLIILND------NMASTLCHNVYLLLATHVMVFSPEISGLGFEEEK------LLGSILLPSYKISPCSSDDKVFR   69 (160)
Q Consensus         2 ~~~~~~~~~~~------~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~------~~g~I~L~~~~V~~~~~~~~~~~   69 (160)
                      ++.|+|..-..      +.+.+.|++|||||++++|+|     |+++.+..      +...|+|.+|.|..+.+.  .++
T Consensus         9 ~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~y-----yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~r   81 (123)
T 1wjm_A            9 QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGF-----YKDAKAASAGVPYHGEVPVSLARAQGSVAFDY--RKR   81 (123)
T ss_dssp             CEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEE-----ESSHHHHTTTCBSSSCCCEECTTCEEEECTTC--SSC
T ss_pred             EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEE-----EEcccccccCcccCCCceEEccCcEEeecccc--cCC
Confidence            35677765332      224789999999999999999     99987642      345789999988776442  378


Q ss_pred             eeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           70 KFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        70 ~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      +|+|+|.+++.++|+|+|+|++||++||.+|+.|+...
T Consensus        82 ~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~  119 (123)
T 1wjm_A           82 KHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             SSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            99999998777899999999999999999999997543

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.85  E-value=5.3e-21  Score=132.99  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=74.2

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      |+|...  ....+.|++|||||+++.|+|     |+++.+  ..+.|.|+|.+|.|...+.     .+++|.|.+++.++
T Consensus         3 G~L~K~--g~~~k~Wk~R~fvL~~~~L~Y-----y~~~~~~~~~~~g~i~L~~~~v~~~~~-----~~~~F~i~~~~~r~   70 (103)
T 3rcp_A            3 GVLYKW--TNYLTGWQPRWFVLDNGILSY-----YDSQDDVCKGSKGSIKMAVCEIKVHSA-----DNTRMELIIPGEQH   70 (103)
T ss_dssp             EEEEEE--CCTTTCEEEEEEEEETTEEEE-----ESSCC---CCCSCEEEGGGCEEECCTT-----CSSEEEEEETTTEE
T ss_pred             eEEEEc--cCCCCCeeceEEEEECCEEEE-----EecCCcccCCcccEEEeeeeEEEEcCC-----CCceEEEEeCCCCE
Confidence            555443  345688999999999999999     999885  4699999999999876533     36789999887799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhH
Q psy407           83 YYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      |+|+|+|++|+++||.+|+.|.
T Consensus        71 ~~l~a~s~~e~~~Wi~al~~a~   92 (103)
T 3rcp_A           71 FYMKAVNAAERQRWLVALGSSK   92 (103)
T ss_dssp             EEEECSSHHHHHHHHHHHHTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999986

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=7.9e-21  Score=135.80  Aligned_cols=99  Identities=22%  Similarity=0.303  Sum_probs=80.6

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCc
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANM   80 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~   80 (160)
                      .+.|+|...  ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|. |..+...+...++++|.|.++ .
T Consensus        15 ~~~G~L~K~--g~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~-~   86 (125)
T 1eaz_A           15 IKAGYCVKQ--GAVMKNWKRRYFQLDENTIGY-----FKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTT-S   86 (125)
T ss_dssp             SEEEEEEEE--CTTTCCEEEEEEEECSSEEEE-----ESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECS-S
T ss_pred             cEEEEEEEe--CCCCCCcceEEEEEeCCEEEE-----EcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEeC-C
Confidence            356777654  345688999999999999999     9999999999999999975 544432222357899999875 5


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhHhhcc
Q psy407           81 RTYYFAADTRESMIQWMNALSLASILQN  108 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~~~~~  108 (160)
                      ++|+|+|+|++|+.+||.+|+.|+....
T Consensus        87 r~~~l~a~s~~e~~~W~~al~~~i~~~~  114 (125)
T 1eaz_A           87 RTFYVQADSPEEMHSWIKAVSGAIVAQR  114 (125)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            8999999999999999999999986543

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.4e-20  Score=132.75  Aligned_cols=95  Identities=13%  Similarity=0.206  Sum_probs=79.5

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC-eEEEecCCCCccCceeeEEEeeCCce
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~-~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      +.|+|...  ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+ +.|..++..  ..++++|.|.++ .+
T Consensus        10 ~~G~L~K~--~~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~~v~~~~~~--~~~~~~F~i~~~-~r   79 (115)
T 2dn6_A           10 KQGYMMKK--GHRRKNWTERWFVLKPNIISY-----YVSEDLKDKKGDILLDENCCVESLPDK--DGKKCLFLVKCF-DK   79 (115)
T ss_dssp             EEEEEEEE--CTTSSCEEEEEEEECSSCEEE-----ESSTTCSSEEEEECCCTTCEEEEECCC--TTCCSEEEEECS-SC
T ss_pred             EEEEEEec--CCCCCCcEEeEEEEECCEEEE-----eCCCCCcccCcEEEecCcEEEEECCCC--CCCeeEEEEEeC-CC
Confidence            56777653  336788999999999999999     99998899999999998 467666442  257899999876 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           82 TYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      +|+|+|+|++|+.+||.+|+.|+...
T Consensus        80 ~~~l~a~s~~e~~~Wi~ai~~~~~~~  105 (115)
T 2dn6_A           80 TFEISASDKKKKQEWIQAIHSTIHLL  105 (115)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998654

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.85  E-value=1.3e-20  Score=135.41  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=78.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCce
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      +.|+|....  ...+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|. |.....   .+++|+|.|.++ .+
T Consensus        20 ~~G~L~K~g--~~~~~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~~v~~~~~---~~~~~~F~i~~~-~r   88 (126)
T 1fao_A           20 KEGYLTKQG--GLVKTWKTRWFTLHRNELKY-----FKDQMSPEPIRILDLTECSAVQFDYS---QERVNCFCLVFP-FR   88 (126)
T ss_dssp             EEEEEEEEC--SSSCCEEEEEEEEETTEEEE-----ESSTTCSSCSEEEEGGGCCEEEEECS---SSSSSEEEEEET-TE
T ss_pred             EEEEEEEcC--CCCCCcccEEEEEECCEEEE-----eCCCCCCCceeEEEccceEEEEeccc---CCCCCEEEEEeC-Cc
Confidence            457776543  45788999999999999999     9999989999999999988 444332   367899999986 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           82 TYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      +|+|+|+|++|+.+||.+|+.|+..
T Consensus        89 ~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           89 TFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=3.6e-21  Score=138.67  Aligned_cols=95  Identities=15%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEe--CCeEEEcccCCCCCC-ccCccceEEEcCCeEEEecCCCC-cc-----CceeeE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLA--THVMVFSPEISGLGF-EEEKLLGSILLPSYKISPCSSDD-KV-----FRKFSF   73 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~--~~~L~y~~~~yYk~~-~e~~~~g~I~L~~~~V~~~~~~~-~~-----~~~~~F   73 (160)
                      +.|+|...  ....+.||+|||||+  +..|+|     |+++ .+..++|.|+|.+|.|..+...+ +.     .++++|
T Consensus        20 ~~G~L~K~--g~~~~~Wk~R~fvL~~d~~~L~y-----y~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F   92 (129)
T 1x1g_A           20 KQGYLAKQ--GHKRKNWKVRRFVLRKDPAFLHY-----YDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLF   92 (129)
T ss_dssp             EEEEEEEE--CSSSSSEEEEEEEEEESSCEEEE-----ECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCE
T ss_pred             EEEEEEEE--CCCCCCeeeEEEEEeCCCCeEEE-----eCCCCcCCccceEEECcCCEEEEeCCCCCcccccCCCCCceE
Confidence            46777654  333789999999999  469999     9987 67889999999999887664320 11     167999


Q ss_pred             EEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           74 KAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        74 ~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|.+++.++|+|+|+|++|+.+||.+|+.|+
T Consensus        93 ~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~  123 (129)
T 1x1g_A           93 KVITKDDTHYYIQASSKAERAEWIEAIKKLT  123 (129)
T ss_dssp             EECCTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             EEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            9998877889999999999999999999986

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.84  E-value=1.4e-20  Score=133.08  Aligned_cols=94  Identities=17%  Similarity=0.158  Sum_probs=76.1

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEe--CCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-C----CccCceeeEEE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLA--THVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-D----DKVFRKFSFKA   75 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~--~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~----~~~~~~~~F~i   75 (160)
                      +.|+|....  ...+.|++|||||+  ++.|+|     |+++.+..+.|.|+|.+|.+..... .    +...++++|.|
T Consensus        10 ~~G~L~K~g--~~~~~Wk~R~fvL~~~~~~L~y-----y~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i   82 (117)
T 1v5u_A           10 YEGILYKKG--AFMKPWKARWFVLDKTKHQLRY-----YDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDV   82 (117)
T ss_dssp             EEEEEEECC--CSSSCCEEEEEEEETTTTEEEE-----ESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEE
T ss_pred             EEEEEEecC--CCCCCceeeEEEEECCCCEEEE-----eecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEE
Confidence            567776543  34689999999999  889999     9999989999999999987544221 1    11356689999


Q ss_pred             eeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           76 EHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        76 ~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .++ .++|+|+|+|++|+++||.+|+.|+
T Consensus        83 ~~~-~r~~~l~a~s~~e~~~Wi~al~~~i  110 (117)
T 1v5u_A           83 KTT-RRVYNFCAQDVPSAQQWVDRIQSCL  110 (117)
T ss_dssp             EES-SCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             ECC-CceEEEECCCHHHHHHHHHHHHHHh
Confidence            875 5899999999999999999999986

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.84  E-value=4.1e-20  Score=131.00  Aligned_cols=92  Identities=16%  Similarity=0.179  Sum_probs=75.7

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCce
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      +.|+|.... ....+.||+|||||+++.|+|     |+++.+..+.|.|+|.++. |...+       +++|.|.++ .+
T Consensus        10 ~~G~L~K~~-~~~~~~WkkR~fvL~~~~L~y-----y~~~~~~~~~g~i~l~~~~~v~~~~-------~~~F~i~~~-~r   75 (115)
T 2cod_A           10 KSGWLDKLS-PQGKRMFQKRWVKFDGLSISY-----YNNEKEMYSKGIIPLSAISTVRVQG-------DNKFEVVTT-QR   75 (115)
T ss_dssp             EEEEEEECC-SSSSSCCEEEEEEECSSEEEE-----EESSCCSSCCCEEETTTEEEEEEET-------TTEEEEEES-SC
T ss_pred             EEEEEEEcC-CCCCCCCceEEEEEECCEEEE-----EcCCCCcccCCEEECCcceEEEeCC-------CCEEEEEeC-Cc
Confidence            567766332 125688999999999999999     9999988999999999975 44332       579999865 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhhcc
Q psy407           82 TYYFAADTRESMIQWMNALSLASILQN  108 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~~~  108 (160)
                      +|+|+|+|++|+.+||.+|+.|+..+.
T Consensus        76 ~~~l~a~s~~e~~~Wi~~l~~~~~~~~  102 (115)
T 2cod_A           76 TFVFRVEKEEERNDWISILLNALKSQS  102 (115)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999985554

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.83  E-value=6.8e-21  Score=137.18  Aligned_cols=96  Identities=19%  Similarity=0.195  Sum_probs=78.0

Q ss_pred             CccceEEEEec------CCCCCCceEEEEEEeCCeEEEcccCCCCCCccCcc--------ceEEEcCCeEEEecCCCCcc
Q psy407            2 DHVCFLIILND------NMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKL--------LGSILLPSYKISPCSSDDKV   67 (160)
Q Consensus         2 ~~~~~~~~~~~------~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~--------~g~I~L~~~~V~~~~~~~~~   67 (160)
                      ++.|+|..=..      +.+.+.|++|||||+++.|+|     |+++.+..+        .+.|+|.+|.|..+.+.  .
T Consensus         9 ~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~-----yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~--~   81 (122)
T 1dro_A            9 GHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISF-----YKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDY--T   81 (122)
T ss_dssp             SEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBE-----ESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSS--S
T ss_pred             EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEE-----EeCCcccccCCCcccCCCceEECCCCEEEeCCCC--C
Confidence            45667654221      225788999999999999999     999887544        37899999988766432  4


Q ss_pred             CceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           68 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        68 ~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +++|+|+|.+.+.++|+|+|+|++||++||.+|+.|+
T Consensus        82 kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i  118 (122)
T 1dro_A           82 KKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS  118 (122)
T ss_dssp             SSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            7899999997777899999999999999999999986

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.83  E-value=4.1e-20  Score=134.21  Aligned_cols=85  Identities=15%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             CCCCCceEEEEEEeCCeEEEcccCCCCCCccC------------ccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407           14 MASTLCHNVYLLLATHVMVFSPEISGLGFEEE------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus        14 ~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~------------~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      .+.+.|++|||||+++.|+|     ||++.+.            .+.+.|+|.+|.|..+.. +..+++|+|+|.+++.+
T Consensus        26 ~~~r~W~~~w~VL~~~~L~~-----yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~-d~~krk~vF~l~t~~~~   99 (124)
T 3pp2_A           26 LRKKHWSASWTVLEGGVLTF-----FKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPK-DKSSRKNVLELRSRDGS   99 (124)
T ss_dssp             CSSCCCEEEEEEEETTEEEE-----ESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCG-GGCSSSSEEEEECTTSC
T ss_pred             CCCCCceEEEEEEECCEEEE-----EecCccccccCccCcccccCCcceEEcCCCEEEeccc-ccCCCceEEEEECCCCC
Confidence            34568999999999999999     9998764            578999999999988741 22478999999987778


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|+|+|+|++||++||.+|+.|+
T Consensus       100 ~ylfqA~s~~e~~~Wi~aI~~aI  122 (124)
T 3pp2_A          100 EYLIQHDSEAIISTWHKAIAQGI  122 (124)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999986

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.83  E-value=2.4e-20  Score=147.25  Aligned_cols=98  Identities=12%  Similarity=0.203  Sum_probs=82.2

Q ss_pred             ccceEEEEecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|.....+.  ..+.||+|||||+++.|+|     |+++.+..+.|.|+|.+|.+..... ....+++|+|.|.+++
T Consensus       108 k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Y-----yk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~  182 (211)
T 1u5e_A          108 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYY-----YGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD  182 (211)
T ss_dssp             EEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSS
T ss_pred             EEEEEEEECCCCCcCCCCcEeEEEEEECCEEEE-----EcCCCCccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCC
Confidence            567777766543  3679999999999999999     9999999999999999998876432 1112568999999877


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .|+|+|+|+|++++.+||.+|+.|+.
T Consensus       183 ~r~~~l~A~s~~e~~~Wi~aL~~ai~  208 (211)
T 1u5e_A          183 KRIYQFTAASPKDAEEWVQQLKFILQ  208 (211)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999874

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-19  Score=137.20  Aligned_cols=97  Identities=20%  Similarity=0.242  Sum_probs=75.5

Q ss_pred             ceEEEEec---CCCCCCceEEEEEEeCCeEEEcccCCCCCCcc-CccceEEEcCCeE-EEecCCCC---ccCceeeEEEe
Q psy407            5 CFLIILND---NMASTLCHNVYLLLATHVMVFSPEISGLGFEE-EKLLGSILLPSYK-ISPCSSDD---KVFRKFSFKAE   76 (160)
Q Consensus         5 ~~~~~~~~---~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-~~~~g~I~L~~~~-V~~~~~~~---~~~~~~~F~i~   76 (160)
                      |+|+.-..   +.+.+.||+|||||+++.|+|     |+++.+ ..+.|.|+|.++. |..+...+   ...++++|.|.
T Consensus        19 G~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Y-----yk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~   93 (164)
T 2lul_A           19 EILIKRSQQKKKTSPLNYKERLFVLTKSMLTY-----YEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVV   93 (164)
T ss_dssp             EEEEEECCCCSSSCCCCEEEEEEEEESSEEEE-----ECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEE
T ss_pred             EEEEEecCCCCCCCCCCceeEEEEEECCEEEE-----EeccCcccccccEEEEeeeEEEEeccccccCcccccceeEEEe
Confidence            55554322   234567999999999999999     998765 5689999998865 55544322   23568899999


Q ss_pred             eCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           77 HANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        77 ~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      +++ |+|||+|+|++|+++||.+|+.++...
T Consensus        94 t~~-rt~~l~A~s~~e~~~Wi~aL~~~i~~n  123 (164)
T 2lul_A           94 HDA-NTLYIFAPSPQSRDLWVKKLKEEIKNN  123 (164)
T ss_dssp             CSS-CEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred             cCC-cEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence            864 899999999999999999999997543

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.83  E-value=2.9e-20  Score=140.35  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             CccceEEEE--------ecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc--CccceEEEcCC--eEEEecCCCCccCc
Q psy407            2 DHVCFLIIL--------NDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE--EKLLGSILLPS--YKISPCSSDDKVFR   69 (160)
Q Consensus         2 ~~~~~~~~~--------~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e--~~~~g~I~L~~--~~V~~~~~~~~~~~   69 (160)
                      ++.|+|..-        +.....+.|++|||||+++.|+|     |+++.+  ..+.|.|+|..  |.+......  .++
T Consensus         4 ~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~y-----yk~~~~~~~~~~g~i~l~~~~~~~~~~~~~--~~~   76 (168)
T 2j59_M            4 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYL-----YKDKREQTTPSEEEQPISVNACLIDISYSE--TKR   76 (168)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEE-----ESCTTCC--------CEECSSCEEEECSSS--CSC
T ss_pred             cEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEE-----EECCcccccccCCceEecccceEEEecccc--CCC
Confidence            356777643        22246788999999999999999     999865  67899988866  666554332  367


Q ss_pred             eeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           70 KFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        70 ~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|+|+|.+++ ++|+|+|+|++||.+||.+|+.|+.
T Consensus        77 ~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           77 KNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             SSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            8999999876 8999999999999999999999874

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.8e-19  Score=128.09  Aligned_cols=92  Identities=15%  Similarity=0.255  Sum_probs=75.2

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      ++.|+|...... ..+.|++|||||+++.|+|     |+++.+ .+.+.|.|.+|.|.+..     .++++|.|.++ .+
T Consensus        11 ~~~G~L~K~~~~-~~k~WkkR~fvL~~~~L~y-----yk~~~~-~~~~~i~l~~~~v~~~~-----~~~~~F~I~~~-~r   77 (114)
T 2da0_A           11 EKKGYLLKKSDG-IRKVWQRRKCSVKNGILTI-----SHATSN-RQPAKLNLLTCQVKPNA-----EDKKSFDLISH-NR   77 (114)
T ss_dssp             CEEEEEEEECSS-SCCCEEEEEEEEETTEEEE-----CCSSCC-SCCEEEETTTSEEEECS-----SSSSCEEEEET-TE
T ss_pred             cEEEEEEEeCCC-CCCCceeEEEEEeCCEEEE-----EcCCCC-CCCCEEEeeeeEEEECC-----CCCCEEEEEcC-Cc
Confidence            467777765532 2389999999999999999     998655 57788999888877432     35689999976 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           82 TYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      +|+|+|+|++|+.+||.+|+.|+..
T Consensus        78 ~~~l~a~s~~e~~~Wi~al~~~~~~  102 (114)
T 2da0_A           78 TYHFQAEDEQDYVAWISVLTNSKEE  102 (114)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.82  E-value=7.4e-21  Score=136.69  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=76.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeC-CeEEEcccCCCCCCccCccceEEEcCCeEEEecC--CCCccCceeeEEEee--
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLAT-HVMVFSPEISGLGFEEEKLLGSILLPSYKISPCS--SDDKVFRKFSFKAEH--   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~-~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~--~~~~~~~~~~F~i~~--   77 (160)
                      +.|+|..  .....+.||+|||||++ +.|+|     |+++.+..+.|.|+|.++.|..+.  ..+ .+++++|+|.+  
T Consensus        10 ~~G~L~K--~g~~~k~WkkRwfvL~~~~~L~y-----y~~~~~~~~~g~i~L~~~~~~~~~~~~~~-~~~~~~F~I~~~~   81 (125)
T 1unq_A           10 KEGWLHK--RGEYIKTWRPRYFLLKNDGTFIG-----YKERPQDVDQREAPLNNFSVAQCQLMKTE-RPRPNTFIIRCLQ   81 (125)
T ss_dssp             EEEEEEE--ECSSSCCEEEEEEEEETTSEEEE-----ESSCCCSHHHHTSCSEEEECTTCEEEEEC-SSSTTEEEEEEEE
T ss_pred             EEeeEEe--ccCCccCccCcEEEEecCCEEEE-----EeCCCCCCCCceeEccceeEEeeeecccc-cCCCCEEEEEecC
Confidence            6778764  34467899999999995 69999     999988888999998877643221  011 26789999986  


Q ss_pred             -CCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           78 -ANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        78 -~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                       ...++|+|+|+|++|+.+||.+|+.|+...
T Consensus        82 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  112 (125)
T 1unq_A           82 WTTVIERTFHVETPEEREEWTTAIQTVADGL  112 (125)
T ss_dssp             TTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence             356899999999999999999999997543

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.82  E-value=1.1e-19  Score=133.47  Aligned_cols=98  Identities=12%  Similarity=0.089  Sum_probs=77.7

Q ss_pred             CccceEEE---EecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCc---------cCccceEEEcCCeEEEecCCCCcc
Q psy407            2 DHVCFLII---LNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFE---------EEKLLGSILLPSYKISPCSSDDKV   67 (160)
Q Consensus         2 ~~~~~~~~---~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~---------e~~~~g~I~L~~~~V~~~~~~~~~   67 (160)
                      +..|||-.   +++..  ..+.|+||||||.+++|+|     |+...         +.+|.|.|+|.|+.|...+.   .
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~y-----f~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~---~   73 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLY-----YGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDD---P   73 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEE-----EEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCC---T
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEE-----EcccccccccccccccCCCceEEeCCCEEEecCC---C
Confidence            34566543   33322  2577999999999999999     88553         45799999999999984433   3


Q ss_pred             CceeeEEEeeC-CceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           68 FRKFSFKAEHA-NMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        68 ~~~~~F~i~~~-~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      +++++|+|.++ ....|.|+|+|++++.+||+||+.|+...
T Consensus        74 ~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~  114 (126)
T 2dtc_A           74 EHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS  114 (126)
T ss_dssp             TSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence            68999999976 56789999999999999999999998533

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.82  E-value=5.8e-20  Score=149.61  Aligned_cols=85  Identities=11%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCC------ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCC
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGF------EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADT   89 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~------~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aes   89 (160)
                      .+.|++|||||++++|+|     |+++      .+..|.|.|+|.+|.|..+.+.  .+++|+|+|.+++.++|+|+|+|
T Consensus        36 ~K~WkrRWfVL~~~~L~y-----yK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~--~kk~~~F~I~t~~~r~y~f~A~s  108 (263)
T 3a8p_A           36 RRKWKQYWVTLKGCTLLF-----YETYGKNSTEQNSAPRCALFAEDSIVQSVPEH--PKKEHVFCLSNSCGDVYLFQATS  108 (263)
T ss_dssp             TCCCEEEEEEEETTEEEE-----ESSCCC------CCCSEEEECTTCEEEECTTC--SSCSSEEEEECTTSCEEEEECSS
T ss_pred             CCCceEEEEEEcCCEEEE-----EecCcccccccccCccceEEcCCcEEEECCcC--CCCCCEEEEEcCCCcEEEEEcCC
Confidence            789999999999999999     9984      4578999999999998876442  36799999998677899999999


Q ss_pred             HHHHHHHHHHHHHhHhhc
Q psy407           90 RESMIQWMNALSLASILQ  107 (160)
Q Consensus        90 e~e~~~Wi~aL~~a~~~~  107 (160)
                      ++||++||++|+.|+...
T Consensus       109 ~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A          109 QTDLENWVTAIHSACASL  126 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999987543

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.81  E-value=5.6e-20  Score=133.37  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=68.0

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeC-CeEEEcccCCCCCCcc---CccceEEEcCCeEEEe--------------cCC-
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLAT-HVMVFSPEISGLGFEE---EKLLGSILLPSYKISP--------------CSS-   63 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~-~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~--------------~~~-   63 (160)
                      +.|+|..-..+...+.||+|||||++ +.|+|     |++..+   ....+.|+|..+++..              ++. 
T Consensus         6 k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y-----~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~   80 (128)
T 2rlo_A            6 KQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLY-----HPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG   80 (128)
T ss_dssp             EEEEEEEECSCSTTCCEEEEEEEEETTTEEEE-----ESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCC
T ss_pred             eEEEEEEecCCCccCCccEEEEEEeCCCEEEE-----ecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccc
Confidence            45777764333457899999999996 68887     876332   1122345555544432              110 


Q ss_pred             --CCccCceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           64 --DDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        64 --~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                        .....++|+|.|.+++.++|+|+|+|++|+++||.||+.|+.
T Consensus        81 ~~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           81 SAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             CCSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence              000156899999988768999999999999999999999864

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.80  E-value=3.6e-19  Score=149.76  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=80.5

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC--
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--   79 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~--   79 (160)
                      .+.|+|...  ....+.||+|||||++++|+|     |+++.+..|.|.|+|.+|.|..+..   .+++++|+|.+++  
T Consensus       214 ~k~G~L~K~--g~~~k~WkkRwFVL~~~~L~Y-----yk~~~~~~p~G~I~L~~~~v~~~~~---~~~~~~F~I~~~~~~  283 (347)
T 2r09_A          214 DREGWLLKL--GGRVKTWKRRWFILTDNCLYY-----FEYTTDKEPRGIIPLENLSIREVED---PRKPNCFELYNPSHK  283 (347)
T ss_dssp             CEEEEEEEE--CSSSCCEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEEECC---SSCSSEEEEECSSST
T ss_pred             ccCCeeEec--CCCcccceeEEEEEcCCEEEE-----EcCCCccCCcEEEEcCCeEEEEccC---CCCCCEEEEEeCCcc
Confidence            356777543  344789999999999999999     9999999999999999999887754   3788999998763  


Q ss_pred             -------------------ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 -------------------MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 -------------------~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                                         .|+|+|+|+|++|+.+||.+|+.|+.
T Consensus       284 ~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          284 GQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             TCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                               48999999999999999999999874

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.77  E-value=8.7e-19  Score=139.40  Aligned_cols=93  Identities=19%  Similarity=0.185  Sum_probs=76.2

Q ss_pred             ccceEEEEecCC---CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNM---ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~---~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|.....+.   +.+.|++|||||+++.|+|     |+++.+..++|.|+|.+|.+.....    +++++|.|.++ 
T Consensus        60 k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Y-----yk~~~~~~~~g~I~L~~~~~v~~~~----~k~~~F~I~t~-  129 (228)
T 3tfm_A           60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMY-----FENDSEEKLKGTVEVRSAKEIIDNT----NKENGIDIIMA-  129 (228)
T ss_dssp             EEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEE-----ESSTTCCSEEEEEEGGGCSEEEEET----TTTSEEEEECS-
T ss_pred             eEEEEEEECCCcCCcccCCceEEEEEEeCCEEEE-----EeCCCCcceeEEEEcCCCEEeccCC----CCCcEEEEEcC-
Confidence            345665443322   2388999999999999999     9999988999999999987643322    56889999875 


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .++|+|+|+|++|+.+||.+|+.++.
T Consensus       130 ~r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          130 DRTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999975

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.77  E-value=1.2e-18  Score=147.59  Aligned_cols=95  Identities=7%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             CccceEEEEecCCCC-CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc
Q psy407            2 DHVCFLIILNDNMAS-TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM   80 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~-k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~   80 (160)
                      .+.|+|..-..++.. +.|+||||||++++|+|     |++ .+..+.|.|+|.+|.|..+...   +++|+|+|.+++.
T Consensus       279 ~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y-----~k~-~~~~~~~~i~l~~~~v~~~~~~---~r~~~F~i~t~~~  349 (385)
T 2q13_A          279 RKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMS-----QAR-GDVAGGLAMDIDNCSVMAVDCE---DRRYCFQITSFDG  349 (385)
T ss_dssp             CCEEEEEEC--------CCEEEEEEEETTEEEE-----ECS-SCSSCEEEEECTTCEEEEECCT---TCSSEEEEECTTS
T ss_pred             cEEEEEEEecCCCCCcCCceeEEEEEECCEEEE-----ecC-CCcCCCceEEccceEEEecccc---CCCceEEEEeCCC
Confidence            345777654332212 36999999999999999     998 4566889999999999887543   7889999998754


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           81 -RTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        81 -r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                       ++|+|+|+|++||.+||.||+.|+.
T Consensus       350 ~~~~~l~A~s~~e~~~Wi~ai~~~~~  375 (385)
T 2q13_A          350 KKSSILQAESKKDHEEWICTINNISK  375 (385)
T ss_dssp             CBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence             8999999999999999999999864

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.77  E-value=1.1e-18  Score=142.14  Aligned_cols=91  Identities=18%  Similarity=0.111  Sum_probs=74.2

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCC-------eEEEcccCCCCCCcc-----CccceEEEcCCeE-EEecCCCCccCc
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATH-------VMVFSPEISGLGFEE-----EKLLGSILLPSYK-ISPCSSDDKVFR   69 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~-------~L~y~~~~yYk~~~e-----~~~~g~I~L~~~~-V~~~~~~~~~~~   69 (160)
                      +.|+|...      |.||||||||++.       .|+|     |+++.+     .+++|.|+|.+|. |.....   .++
T Consensus        12 k~G~L~K~------K~WkkRwFVL~~~~~~G~~~~L~Y-----Yk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~---~~~   77 (264)
T 1qqg_A           12 KVGYLRKP------KSMHKRFFVLRAASEAGGPARLEY-----YENEKKWRHKSSAPKRSIPLESCFNINKRAD---SKN   77 (264)
T ss_dssp             EEEEEECT------TTCCEEEEEEECCBTTTBSSEEEE-----ESSHHHHHTTCSCCSEEEEGGGEEEEEEECC---SSC
T ss_pred             EEEEEEEC------CCCEeEEEEEECCCCCCCCCEEEE-----ECCCccccccccCcceEEEeeceEEEEeccC---CCC
Confidence            45666432      8999999999988       9999     999987     6899999999986 555433   367


Q ss_pred             eeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHhhcc
Q psy407           70 KFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQN  108 (160)
Q Consensus        70 ~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~~  108 (160)
                      +|+|.|.++ .|+|+|+|+|++|+++||.+|+.++....
T Consensus        78 ~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~k  115 (264)
T 1qqg_A           78 KHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRAK  115 (264)
T ss_dssp             SSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC----
T ss_pred             CcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence            899999987 58999999999999999999999875543

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=147.65  Aligned_cols=93  Identities=14%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             cceEEEEecCCC-CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-ce
Q psy407            4 VCFLIILNDNMA-STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MR   81 (160)
Q Consensus         4 ~~~~~~~~~~~~-~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-~r   81 (160)
                      .|+|.+-.++++ .+.|+||||||++++|+|     |+... ..+.+.|+|.+|+|.+++..   .|+|||+|.+++ .+
T Consensus       304 ~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y-----~~~~~-~~~~~~~~l~~~~v~~~~~~---~r~~cF~i~~~~~~~  374 (407)
T 4h8s_A          304 AGYLNLRNKTGLVTTTWERLYFFTQGGNLMC-----QPRGA-VAGGLIQDLDNCSVMAVDCE---DRRYCFQITTPNGKS  374 (407)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEECSSCEEC-----CCTTC-SSCCCCBCSSCCEEEEECCT---TCSSEEEEECTTSSC
T ss_pred             eceeeeeccCCCCCCCceEEEEEEECCEEEE-----EeCCC-CCCCeEEECCceEEEECCCC---CCCceEEEEecCCCc
Confidence            477766655544 467999999999999998     88654 45889999999999887654   678999999875 47


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           82 TYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|+|+|+|++||.+||.||+.|+.
T Consensus       375 ~~~l~A~s~~e~~~Wi~ai~~a~~  398 (407)
T 4h8s_A          375 GIILQAESRKENEEWICAINNISR  398 (407)
T ss_dssp             CEEEECSSSHHHHHHHHHHHHHHS
T ss_pred             eEEEEcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999874

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.75  E-value=1e-17  Score=142.82  Aligned_cols=95  Identities=11%  Similarity=0.137  Sum_probs=75.3

Q ss_pred             ccceEEEEecCCCC-CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC----eEEEecCCCCccC--ceeeEEE
Q psy407            3 HVCFLIILNDNMAS-TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS----YKISPCSSDDKVF--RKFSFKA   75 (160)
Q Consensus         3 ~~~~~~~~~~~~~~-k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~----~~V~~~~~~~~~~--~~~~F~i   75 (160)
                      +.|+|...  .... +.||+|||||+++.|+|     |+++.+..++|.|+|..    +.|....+.+..+  ++|+|.|
T Consensus       271 k~G~L~K~--g~~~~k~WKkRwFVL~~~~L~Y-----Yk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I  343 (386)
T 3lju_X          271 KEGYMEKT--GPKQTEGFRKRWFTMDDRRLMY-----FKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITI  343 (386)
T ss_dssp             EEEEEEEC--CTTSCSCCEEEEEEEETTEEEE-----ESSTTCSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEE
T ss_pred             eeeeEEEE--CCCCCCCCcccEEEEECCEEEE-----EecCCCcccceEEEeecceeeeeecccCCccccccCCCcEEEE
Confidence            56777643  3334 78999999999999999     99999999999999965    3454432222112  2699999


Q ss_pred             eeCCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           76 EHANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        76 ~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .+++ |+|+|+|+|++|+++||.||+.++.
T Consensus       344 ~t~~-rty~l~A~s~~e~~~Wi~aL~~~i~  372 (386)
T 3lju_X          344 VTPD-RKFLFACETESDQREWVAAFQKAVD  372 (386)
T ss_dssp             ECSS-CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            9875 8999999999999999999999864

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.75  E-value=1.1e-18  Score=141.18  Aligned_cols=99  Identities=13%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcC---CeEEEecCCC---CccCceeeEEE
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLP---SYKISPCSSD---DKVFRKFSFKA   75 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~---~~~V~~~~~~---~~~~~~~~F~i   75 (160)
                      ++.|+|..-  ..+.+.|++|||||++++|+|     |+++.+..+.|.|.|.   ++.|......   ....++|+|.|
T Consensus       169 ~~~G~L~k~--~~~~k~WkkR~fvL~~~~L~y-----yk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i  241 (291)
T 3tca_A          169 ELEGALYLK--EDGKKSWKRRYFLLRASGIYY-----VPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVL  241 (291)
T ss_dssp             CCEEEEEEE--CTTSSCEEEEEEEECSSEEEE-----CCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEE
T ss_pred             ceEEEEEEe--CCCCCCceEEEEEEeCCEEEE-----EecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEE
Confidence            577888754  445689999999999999999     9999998888887764   4555443221   01246899999


Q ss_pred             eeCC-----ceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           76 EHAN-----MRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        76 ~~~~-----~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .+++     .++|||+|+|++++.+||+||+.|..+.
T Consensus       242 ~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g~  278 (291)
T 3tca_A          242 KHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKYGK  278 (291)
T ss_dssp             ECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHHTH
T ss_pred             EcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhcch
Confidence            8753     3679999999999999999999997543

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.73  E-value=4.8e-17  Score=122.39  Aligned_cols=92  Identities=20%  Similarity=0.300  Sum_probs=73.8

Q ss_pred             eEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCC---------CCcc-------------------------Cc-----
Q psy407            6 FLIILNDNMASTLCHNVYLLLATHVMVFSPEISGL---------GFEE-------------------------EK-----   46 (160)
Q Consensus         6 ~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk---------~~~e-------------------------~~-----   46 (160)
                      ++|+++++ -.+.|++|||||.+..|+|     ++         ++++                         ..     
T Consensus         5 G~L~~~~~-~~~~w~~~~fvL~~~~L~y-----~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~   78 (150)
T 2fjl_A            5 GILYLEDP-VNHEWYPHYFVLTSSKIYY-----SEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREH   78 (150)
T ss_dssp             EEEEEEET-TTTEEEEEEEEEETTEEEE-----CCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSS
T ss_pred             eEEEeecC-CCCCceEeEEEEECCEEEE-----EeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhc
Confidence            56778875 4579999999999999999     55         1100                         11     


Q ss_pred             ----------cceEEEcCCeEEEecCCCCccCceeeEEEeeCC--ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           47 ----------LLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        47 ----------~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~--~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                                ..|.|+|.||.|....... .+++|+|+|.+++  .++|+|+|+|.++|.+||.+|+.|+
T Consensus        79 l~E~~~lG~l~kG~IdL~gc~V~~~~~~~-~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa  147 (150)
T 2fjl_A           79 LDENSPLGDLLRGVLDVPACQIAIRPEGK-NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA  147 (150)
T ss_dssp             SCTTTTTTTCCCEEECSTTCEEEEETTCS-SSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccceEecCccEEEeccCCC-CCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence                      1799999999998875432 3689999998763  4689999999999999999999986

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.69  E-value=4.1e-17  Score=139.09  Aligned_cols=93  Identities=11%  Similarity=0.155  Sum_probs=71.7

Q ss_pred             ccceEEEEecCCCCCCceEEEEEE--eCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEe---e
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLL--ATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---H   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL--~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~---~   77 (160)
                      ..|+|..  +....+.||||||||  ++++|+|     |+++.+.+|+|.|.|.++++...+.  ..+++++|.|.   .
T Consensus       148 keG~L~K--rG~~~k~WkrRwFVL~~~~~~L~Y-----y~~~~~~~p~g~I~L~~~~~~~~~~--~~~~~~~f~I~~~~~  218 (386)
T 3lju_X          148 REGFLWK--RGRDNGQFLSRKFVLTEREGALKY-----FNRNDAKEPKAVMKIEHLNATFQPA--KIGHPHGLQVTYLKD  218 (386)
T ss_dssp             EEEEEEE--ECSSSCCEEEEEEEEETTTTEEEE-----EC-----CCSEEEEGGGEEEEECHH--HHTSTTCEEEEEEET
T ss_pred             cccceee--eccccCCceEEEEEEEcCCCEEEE-----ECCCCccCcccEEEeeccEEEEccc--ccCCCceEEEEEecC
Confidence            3566654  344468999999999  8999999     9999999999999999987655321  23678899987   2


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ...|+|+|+|+|.+||.+||++|+.|.
T Consensus       219 ~~~R~y~l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          219 NSTRNIFIYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             TEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence            456999999999999999999999885

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.68  E-value=5.6e-17  Score=133.19  Aligned_cols=85  Identities=9%  Similarity=0.156  Sum_probs=73.3

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCcc------CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcC
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEE------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   88 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Ae   88 (160)
                      +.+.|++|||||+++.|+|     |+++..      ..+.+.|.|.+|.|..+.+.  .+++|+|+|.+++.++|+|+|+
T Consensus        35 ~~r~Wkk~w~VLkg~~L~f-----YKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~--~kKk~vF~L~t~~g~~yLFQA~  107 (279)
T 3a8n_A           35 TRRKWKHYWVSLKGCTLFF-----YETDGRSGIDHNSVPKHAVWVENSIVQAVPEH--PKKDFVFCLSNSLGDAFLFQTT  107 (279)
T ss_dssp             CCCCCEEEEEEEETTEECC-----BCCC--------CCCSSCCBCCSCEECCCTTS--SSSCSCCCEEETTTEEEECCCS
T ss_pred             cCCCCeEEEEEEeCCEEEE-----EecccccccccccCCCceEeccCcEEEecccc--CCCCcEEEEEcCCCCEEEEeCC
Confidence            5689999999999999999     998763      35788999999999865432  3788999999888899999999


Q ss_pred             CHHHHHHHHHHHHHhHhh
Q psy407           89 TRESMIQWMNALSLASIL  106 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~~~  106 (160)
                      |++||++||.+|+.|+..
T Consensus       108 s~eEm~~WI~aI~~a~~~  125 (279)
T 3a8n_A          108 SQTELENWITAIHSACAA  125 (279)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999998863

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.68  E-value=2.8e-16  Score=113.57  Aligned_cols=95  Identities=13%  Similarity=0.165  Sum_probs=71.8

Q ss_pred             ceEEEEecCCCCC-CceEEEEEEeCCeEEEcccCCCCCCccC---ccceEEEcCCe-EEEecCCCCc-----cCceeeEE
Q psy407            5 CFLIILNDNMAST-LCHNVYLLLATHVMVFSPEISGLGFEEE---KLLGSILLPSY-KISPCSSDDK-----VFRKFSFK   74 (160)
Q Consensus         5 ~~~~~~~~~~~~k-~WkkRWFVL~~~~L~y~~~~yYk~~~e~---~~~g~I~L~~~-~V~~~~~~~~-----~~~~~~F~   74 (160)
                      |.|..=+..+..+ .|++|||||.+..|+|     |+++.+.   .|.|.|+|..+ .|+.+...|.     ...++.|+
T Consensus         5 Gwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~-----y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~   79 (117)
T 2rov_A            5 GWLSLPVRNNTKKFGWVKKYVIVSSKKILF-----YDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQ   79 (117)
T ss_dssp             EEEECCCCSSSSCCCCCEEEEEEETTEEEE-----ESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEE
T ss_pred             EEEEeecCCCccCCCcEEEEEEEECCEEEE-----EECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEE
Confidence            4443323334445 7999999999999999     9987654   78999999664 5666644321     13467899


Q ss_pred             EeeC-----CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           75 AEHA-----NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        75 i~~~-----~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      |...     ..+++||.|+|++|+++||.+|+.++
T Consensus        80 I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i  114 (117)
T 2rov_A           80 ILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKI  114 (117)
T ss_dssp             EEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            9763     35899999999999999999999875

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.57  E-value=8e-15  Score=120.50  Aligned_cols=99  Identities=14%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCc---cceEEEcCCeEEEecCCCC---ccCceeeEEE
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEK---LLGSILLPSYKISPCSSDD---KVFRKFSFKA   75 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~---~~g~I~L~~~~V~~~~~~~---~~~~~~~F~i   75 (160)
                      |+.|||..-  ..+.+.|+||||||++++|||     |++.+...   +.+.+.|.+|.|-.+....   ..-.+|+|.|
T Consensus       159 e~~G~L~~k--~~~~k~WkkRyfvLr~sgLyy-----~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~i  231 (281)
T 4gmv_A          159 EIEGVLWLK--DDGKKSWKKRYFLLRASGIYY-----VPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVL  231 (281)
T ss_dssp             CCEEEEEEE--CTTSSCEEEEEEEECSSCEEE-----C---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEE
T ss_pred             ccEEEEEEE--CCCCCCCeEEEEEEeCCEEEE-----EeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEE
Confidence            567776332  234589999999999999999     77654433   4567799999887753210   1135789999


Q ss_pred             eeCC-----ceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           76 EHAN-----MRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        76 ~~~~-----~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .++.     ...+||+|+|++++..||+||+.|..+.
T Consensus       232 k~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~g~  268 (281)
T 4gmv_A          232 KHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGK  268 (281)
T ss_dssp             ECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHHTH
T ss_pred             ecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhhCc
Confidence            8643     3579999999999999999999997553

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.56  E-value=2.1e-14  Score=116.59  Aligned_cols=97  Identities=11%  Similarity=0.097  Sum_probs=71.8

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceE---EEcCCeEEEecCCCC---ccCceeeEEEee
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGS---ILLPSYKISPCSSDD---KVFRKFSFKAEH   77 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~---I~L~~~~V~~~~~~~---~~~~~~~F~i~~   77 (160)
                      .|+|. ++ ..+.|.||||||||++++|||     |++.+...+++.   +.|.++.|-.+....   ..-.+|+|.|.+
T Consensus       135 ~G~L~-~k-e~~~K~WkkRyfvLr~sgLy~-----~~k~~sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~  207 (256)
T 3hk0_A          135 QGFLH-VK-ELGKKSWKKLYVCLRRSGLYC-----STKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKP  207 (256)
T ss_dssp             EEEEE-EE-CTTSSCEEEEEEEEETTEEEE-----ESSTTCCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEE
T ss_pred             eeEEE-Ee-cCCCCcceEEEEEEeCCEEEE-----EecCCCCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEc
Confidence            45553 22 234589999999999999999     877665556554   799999886654311   011368999986


Q ss_pred             CCc-----eEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           78 ANM-----RTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        78 ~~~-----r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      ...     ..+||+|++++++.+||+||+.|..+.
T Consensus       208 ~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g~  242 (256)
T 3hk0_A          208 NKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYGM  242 (256)
T ss_dssp             TTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHTH
T ss_pred             ccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhhH
Confidence            532     369999999999999999999997654

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=7.3e-14  Score=101.95  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCC------eEEEcccCCCCCCcc----CccceEEEcCCe-EEEecCCC-CccCce
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATH------VMVFSPEISGLGFEE----EKLLGSILLPSY-KISPCSSD-DKVFRK   70 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~------~L~y~~~~yYk~~~e----~~~~g~I~L~~~-~V~~~~~~-~~~~~~   70 (160)
                      +.|+|..=..-.-.|.||||||||...      -|-|     |.+++.    ..++.+|.|.+| .|.+++.+ ...+..
T Consensus        14 k~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~-----yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~   88 (127)
T 2d9w_A           14 KQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLEL-----QEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDT   88 (127)
T ss_dssp             EEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEE-----ECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSC
T ss_pred             cceEEEecccchhhhhhheeEEEEecCCCCCceeeee-----eeccCccccCCCCceEEEhhhCCeEecccCccCCCCcc
Confidence            456666655523346799999999853      6777     777655    367899999998 48777654 333667


Q ss_pred             eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           71 FSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        71 ~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      ++|.|++++ ++|+|+|+++ |+.+||.+|...+-..
T Consensus        89 ~aF~l~T~e-r~~~laAe~~-E~~~Wi~~ic~~aF~~  123 (127)
T 2d9w_A           89 SAFFLETKE-RLYLLAAPAA-ERGDWVQAICLLAFSG  123 (127)
T ss_dssp             EEEEEEESS-CEEEEEECHH-HHHHHHHHHHHHHTSS
T ss_pred             eEEEEEeCC-cEEEEEeCcH-HHHHHHHHHHHHhcCC
Confidence            899999875 8999999975 8999999999976443

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.38  E-value=6.6e-13  Score=112.91  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             cceEEEEecCCCCCCceEEEEEEe-CCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeCCce
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLA-THVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~-~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~~~r   81 (160)
                      .|+|.  |.....|.||+|||||+ +++|+|     ||++.+..+.|.|+|.++++..+.. .....++++|.|...+.+
T Consensus         9 eG~L~--K~g~~~k~Wk~r~fvL~~~~~l~y-----yk~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~~   81 (446)
T 4ejn_A            9 EGWLH--KRGEYIKTWRPRYFLLKNDGTFIG-----YKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWT   81 (446)
T ss_dssp             EEEEE--EEETTTTEEEEEEEEEETTSBEEE-----ESSCC-------CCCGGGBCTTCEEEEECSSSTTEEEEEEEETT
T ss_pred             EeeEE--eeccccccccceEEEEeeCCEEEE-----EecCCCCCccCcccccCccccceeecCCCCCCCceeEEEcCCCc
Confidence            35554  44556789999999997 899999     9999999999999998865432110 001256789999876555


Q ss_pred             EE---EEEcCCHHHHHHHHHHHHHhHhh
Q psy407           82 TY---YFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        82 ~~---~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .+   .|.+++++++.+|+.||+.++..
T Consensus        82 ~~~~r~~~~~~~ee~e~W~~ai~~~i~~  109 (446)
T 4ejn_A           82 TVIERTFHVETPEEREEWTTAIQTVADG  109 (446)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             eeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence            55   79999999999999999998643

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.26  E-value=1.4e-11  Score=92.59  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=65.1

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC-eEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   96 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~-~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~W   96 (160)
                      .|++|||+|++....|     |-++.....+|.|+|.. |.|+..+..       .|.|.+++ |+|+|.+. ..+.++|
T Consensus        65 ~~kkR~liLT~~PrL~-----Yvdp~~~~~KGeIpls~~l~ve~k~~~-------~F~I~Tp~-RtY~~~d~-~~~AqeW  130 (151)
T 1w1g_A           65 FARRRQLLLTEGPHLY-----YVDPVNKVLKGEIPWSQELRPEAKNFK-------TFFVHTPN-RTYYLMDP-SGNAHKW  130 (151)
T ss_dssp             EEEEEEEEEETTTEEE-----EEETTTTEEEEEECCCTTCEEEESSSS-------EEEEEETT-EEEEEECT-TSCHHHH
T ss_pred             cceeEEEEEcCCceEE-----EEcCccccccceEecCCCeeEEEcCCC-------EEEEECCC-ceEEEEcC-ccCHHHH
Confidence            4999999999987777     88999999999999976 567666431       79998887 99999997 8999999


Q ss_pred             HHHHHHhHhhc
Q psy407           97 MNALSLASILQ  107 (160)
Q Consensus        97 i~aL~~a~~~~  107 (160)
                      ++||..+....
T Consensus       131 v~aI~~~~~~~  141 (151)
T 1w1g_A          131 CRKIQEVWRQR  141 (151)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999997554

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.97  E-value=5.5e-09  Score=76.01  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             ecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCe-EEEecCCCC---ccCceeeEEEeeCCceEEEEE
Q psy407           11 NDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSY-KISPCSSDD---KVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus        11 ~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~-~V~~~~~~~---~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      +-...-+.|||+|++|+..+|.+     |+++.+.++.-.|+|.+. .|+.+....   .....++|+|.+. ..+||+.
T Consensus        16 H~t~~d~~rKRHYWrLD~K~Itl-----f~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~-~~~yyVg   89 (125)
T 2coa_A           16 HYSNKDTLRKRHYWRLDCKCITL-----FQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTA-NATYFVG   89 (125)
T ss_dssp             ECCSSSCCCEEEEEEECSSEEEE-----ESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECS-SCCCCEE
T ss_pred             EEccCCccccceeeEecCCeEEE-----EecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEEeC-CeEEEEc
Confidence            44444567999999999999999     999999999999999884 577764321   1246799999985 5789998


Q ss_pred             cC-----------CHHHHHHHHHHHHHhHhhc
Q psy407           87 AD-----------TRESMIQWMNALSLASILQ  107 (160)
Q Consensus        87 Ae-----------se~e~~~Wi~aL~~a~~~~  107 (160)
                      ++           -.+.+..|..||++|...-
T Consensus        90 ~~~~~~p~~~sg~g~~~a~~W~~aIrqALmPv  121 (125)
T 2coa_A           90 EMPGGTPGGPSGQGAEAARGWETAIRQALMSG  121 (125)
T ss_dssp             CCSCCCSSSCCCCCSHHHHHHHHHHHHHGGGS
T ss_pred             cCCCCCCCCcCccccHHHHHHHHHHHhhccCC
Confidence            73           1367999999999997553

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.3e-08  Score=73.00  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCe-EEEecCCCC---ccCceeeEEEeeCCc
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSY-KISPCSSDD---KVFRKFSFKAEHANM   80 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~-~V~~~~~~~---~~~~~~~F~i~~~~~   80 (160)
                      |.++-..++.  +.|||+|++|+..+|.+     |+++.+.++.-.|+|.+. .|+++....   .....+||+|.+. .
T Consensus        12 GWmVH~t~~d--~~rKRHYWrLD~K~Itl-----f~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~-~   83 (129)
T 2d9z_A           12 GWMVHYTSRD--NLRKRHYWRLDSKCLTL-----FQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITD-T   83 (129)
T ss_dssp             EEEEEEESSC--CCCEEEEEEEESSCEEE-----ESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECS-S
T ss_pred             ceEEEEccCC--ccccceeeEecCCeEEE-----EecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEEEEC-C
Confidence            4444444444  56999999999999999     999999999999999885 566653221   1135699999975 5


Q ss_pred             eEEEEEcCC---------------HHHHHHHHHHHHHhHhhcc
Q psy407           81 RTYYFAADT---------------RESMIQWMNALSLASILQN  108 (160)
Q Consensus        81 r~~~l~Aes---------------e~e~~~Wi~aL~~a~~~~~  108 (160)
                      .+||..++.               .+.++.|..||++|...-.
T Consensus        84 ~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALmP~~  126 (129)
T 2d9z_A           84 MVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMSGP  126 (129)
T ss_dssp             CEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhccCCC
Confidence            788887743               6999999999999975543

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.77  E-value=1.8e-08  Score=73.91  Aligned_cols=86  Identities=13%  Similarity=0.073  Sum_probs=66.6

Q ss_pred             CCCCceEEEEEEeC------CeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCceEEEEEc
Q psy407           15 ASTLCHNVYLLLAT------HVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        15 ~~k~WkkRWFVL~~------~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      +...|+|+|+||+.      ..|-|     |..++..+|+..|.+..+. |.....-+-..+.|.|.|...+.-.|+|.|
T Consensus        38 ~~~~W~k~RLvL~k~g~G~~y~LEf-----y~PPkssKpK~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~n~~eyi~ea  112 (136)
T 1v5m_A           38 GTAQWQKCRLLLRRAVAGERFRLEF-----FVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILET  112 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEE-----ESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEEC
T ss_pred             cccchhheeeEEEEccCCCceEEEE-----ecCCcccCCccccchhhhhhhhhccccccCCccceEEEEecCCcEEEEEc
Confidence            55689999999983      35666     9999999999999998852 433222111246678988877666899999


Q ss_pred             CCHHHHHHHHHHHHHhHh
Q psy407           88 DTRESMIQWMNALSLASI  105 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~~  105 (160)
                      .++++|+.|++.|+.+..
T Consensus       113 ~d~~q~~sWla~Ir~C~~  130 (136)
T 1v5m_A          113 IDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcC
Confidence            999999999999998753

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.76  E-value=1.9e-08  Score=74.05  Aligned_cols=84  Identities=12%  Similarity=0.145  Sum_probs=66.0

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCC-C--ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLG-F--EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM   93 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~-~--~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~   93 (160)
                      +.=+.|+|+|-++.|.|     .+. +  ..-...|.|+|.+..|....+  ....+++|+|..+..+++.++|.|.+|+
T Consensus        42 ~~~~eR~l~LF~~~Ll~-----~s~~~~~~~f~~kgklPL~g~~V~~~ed--~~~~~~aFeI~g~~~~~i~v~~~s~eE~  114 (132)
T 1v61_A           42 EEKEERYFLLFSSVLIM-----LSASPRMSGFMYQGKIPIAGMVVNRLDE--IEGSDCMFEITGSTVERIVVHCNNNQDF  114 (132)
T ss_dssp             SCCCEEEEEECSSCEEE-----EECSSSSSCCEEEEEECTTTCBCSTTCS--SSSSCCCEEEECSSSCEEEECCCCSHHH
T ss_pred             CcceEEEEEEcCCeEEE-----EEecCCCceEEEEEEEecceeEEEeccc--cccCccEEEEecCCCceEEEEeCCHHHH
Confidence            44578999999888776     442 2  234678999999988776543  2367899999976658899999999999


Q ss_pred             HHHHHHHHHhHhhc
Q psy407           94 IQWMNALSLASILQ  107 (160)
Q Consensus        94 ~~Wi~aL~~a~~~~  107 (160)
                      ++||.+|+.++...
T Consensus       115 ~~Wl~~L~~~i~~~  128 (132)
T 1v61_A          115 QEWMEQLNRLTKSG  128 (132)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999987543

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=98.56  E-value=8.5e-07  Score=74.94  Aligned_cols=121  Identities=18%  Similarity=0.128  Sum_probs=85.2

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCc-cCccceEEEcCCeEEEecCCCC--ccCceeeEEEeeC-CceEEEEEcCCHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFE-EEKLLGSILLPSYKISPCSSDD--KVFRKFSFKAEHA-NMRTYYFAADTRES   92 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~-e~~~~g~I~L~~~~V~~~~~~~--~~~~~~~F~i~~~-~~r~~~l~Aese~e   92 (160)
                      +.++.|++.|-+..|.+     -+... .-..++.|+|.++.|...+..+  ...-++.|.|.+. +.+.|.|.|.|+++
T Consensus       248 ~~~~~~~~fLF~d~Ll~-----~k~k~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~e  322 (406)
T 2vrw_B          248 RSKTDRYAFLLDKALLI-----CKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTREL  322 (406)
T ss_dssp             CSCEEEEEEEESSEEEE-----EEEETTEEEEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHH
T ss_pred             CccceEEEEecCCEEEE-----EEecCCceEEEEEecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHH
Confidence            46799999999888877     44322 2346789999999987764421  1134689999864 45789999999999


Q ss_pred             HHHHHHHHHHhHhhccCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCccccccCcccC
Q psy407           93 MIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGGVAN  153 (160)
Q Consensus        93 ~~~Wi~aL~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  153 (160)
                      +++||++|+.|.........           ....|.++..+...++.|..|+..+.|+..
T Consensus       323 k~~W~~~i~~ai~~~~~~~~-----------~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~  372 (406)
T 2vrw_B          323 KKKWMEQFEMAISNIYPENA-----------TANGHDFQMFSFEETTSCKACQMLLRGTFY  372 (406)
T ss_dssp             HHHHHHHHHHHHHHHSCTTT-----------TGGGCCEEEECCSSCCBCTTTCCBCCSSSS
T ss_pred             HHHHHHHHHHHHhhhhhccc-----------cCCCCCCccccCCCCCCCccccchhceeCC
Confidence            99999999999755443111           112355666677888999999999988643

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.54  E-value=6.5e-07  Score=79.37  Aligned_cols=121  Identities=18%  Similarity=0.119  Sum_probs=87.2

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCc-cCccceEEEcCCeEEEecCCCC--ccCceeeEEEeeCC-ceEEEEEcCCHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFE-EEKLLGSILLPSYKISPCSSDD--KVFRKFSFKAEHAN-MRTYYFAADTRES   92 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~-e~~~~g~I~L~~~~V~~~~~~~--~~~~~~~F~i~~~~-~r~~~l~Aese~e   92 (160)
                      +.++.|+|.|-+..|.|     -|... .-..++.|+|.++.|......+  ...-++.|.|.+.. .++|.|.|.|+++
T Consensus       420 ~~~~~r~~fLF~d~Ll~-----~k~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~ee  494 (587)
T 3ky9_A          420 RSKMDRYAFLLDKALLI-----CKRRGDSYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTREL  494 (587)
T ss_dssp             CSCEEEEEEEETTEEEE-----EEEETTEEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHH
T ss_pred             CCcceEEEEEECCEEEE-----EEecCCEEEeeeeechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHH
Confidence            57899999999998887     44322 2457899999999988764321  22356789998753 3789999999999


Q ss_pred             HHHHHHHHHHhHhhccCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCccccccCcccC
Q psy407           93 MIQWMNALSLASILQNSSTGWEDRRLNNEDNDSGFHGTYGRSSNRAKPNNAEQQYLGGVAN  153 (160)
Q Consensus        93 ~~~Wi~aL~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  153 (160)
                      +++||++|+.|.....+.           ......|.++..+...++.|..|+..+.|+..
T Consensus       495 K~~Wi~~I~~ai~~~~~~-----------~~~~~~H~F~~~~~~~~t~C~~C~~~l~gl~~  544 (587)
T 3ky9_A          495 KKKWMEQFEMAISNIYPE-----------NATANGHDFQMFSFEETTSCKACQMLLRGTFY  544 (587)
T ss_dssp             HHHHHHHHHHHHHHHSCT-----------TTTGGGCCEEEECCSSCCBCTTTCSBCCSSSC
T ss_pred             HHHHHHHHHHHhhhhccc-----------cccccCCceeEEeCCCCccccccccccccccc
Confidence            999999999998554431           11223466777788999999999999988653

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.53  E-value=4.4e-07  Score=71.88  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             CCceEEEEEEeC-----C--eEEEcccCCCCCCcc----CccceEEEcCCe-EEEecCCCCccCceeeEEEeeCCceEEE
Q psy407           17 TLCHNVYLLLAT-----H--VMVFSPEISGLGFEE----EKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYY   84 (160)
Q Consensus        17 k~WkkRWFVL~~-----~--~L~y~~~~yYk~~~e----~~~~g~I~L~~~-~V~~~~~~~~~~~~~~F~i~~~~~r~~~   84 (160)
                      |.||+||+||+.     .  .|..     |||..+    ...+.+|.|..+ -++....-  .++.+.+.|+..+ .++.
T Consensus        21 KkWk~rw~vlrk~s~~adcl~L~v-----Ykd~~dr~k~~~~KaslsL~~~~GlE~g~~l--dk~s~TlAIIc~d-~~~v   92 (224)
T 3ml4_A           21 KKWKSRWLVLRKPSPVADCLLMLV-----YKDKCERSKGLRERSSLTLEDICGLEPALPY--EGLAHTLAIICLS-QAVM   92 (224)
T ss_dssp             -CCEEEEEEEECSSTTSSCEEEEE-----ESSSHHHHSCCCCSEEEEECCEEEEEEEEEE--TTEEEEEEEEESS-CEEE
T ss_pred             CceeeEEEEEEcCCCchheEEEEE-----EcChhhhhcCCcccceeehHHhcCccccccc--cCcccEEEEEecC-cEEE
Confidence            589999999995     2  4566     998877    567899999885 46664321  1678899999875 5789


Q ss_pred             EEcCCHHHHHHHHHHHHHh
Q psy407           85 FAADTRESMIQWMNALSLA  103 (160)
Q Consensus        85 l~Aese~e~~~Wi~aL~~a  103 (160)
                      |++|++++|.+|-..|+..
T Consensus        93 LAFds~e~l~~W~~~l~~s  111 (224)
T 3ml4_A           93 LGFDSHEAMCAWDTRIRYA  111 (224)
T ss_dssp             EECSSHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHhhc
Confidence            9999999999999999874

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.52  E-value=1.2e-06  Score=62.49  Aligned_cols=93  Identities=12%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc-c--CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE-E--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~-e--~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      |-|+.|..+.. +.=++++|.|-+.+|.|.    .+... .  -+....++|.+..|..+.+.+  .-+++|+|... .+
T Consensus        12 G~l~el~~~~~-k~~~~v~~FLfND~Ll~a----~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~--~~~n~f~i~~~-~~   83 (113)
T 1zc3_B           12 GDLVEYEADHM-AQLQRVHGFLMNDCLLVA----TWLPQRRGMYRYNALYPLDRLAVVNVKDNP--PMKDMFKLLMF-PE   83 (113)
T ss_dssp             EEEEEEETTTC-CEEEEEEEEEESSEEEEE----EEECCTTSCEEEEEEEETTTCEEEEECCBT--TBSSEEEEEET-TE
T ss_pred             CcEEEEccccC-CCCccEEEEecCCEEEEE----EEeccCcccEEEEEEEEcccCEEEECCCCc--ccceEEEEEeC-Cc
Confidence            66666654433 334557777776677761    11111 1  255667899999888775432  46889999875 47


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           82 TYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|.|+|+|.+|..+||.+|+.|..
T Consensus        84 s~~~~aes~~eK~~Wl~~~~~a~~  107 (113)
T 1zc3_B           84 SRIFQAENAKIKREWLEVLEETKR  107 (113)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999863

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.33  E-value=8.5e-06  Score=60.35  Aligned_cols=90  Identities=9%  Similarity=0.005  Sum_probs=65.4

Q ss_pred             CCCCCCceEEEEEEeCCeEEEc-ccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-----ceEEEEE
Q psy407           13 NMASTLCHNVYLLLATHVMVFS-PEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-----MRTYYFA   86 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~-~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-----~r~~~l~   86 (160)
                      |..-++=++|+|-|-...|.|. |...-+....-..++.++|.|..|.....+   .-+|+|.|.+..     .+++.|+
T Consensus        27 K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e---~~p~~~~l~s~~~G~~~k~~i~~~  103 (140)
T 3qwm_A           27 KPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ---YYPNGIRLTSSVPGADIKVLINFN  103 (140)
T ss_dssp             SCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS---SCTTEEEEEECCTTSCCEEEEEEE
T ss_pred             ccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC---CCceEEEEEecCCCCcceEEEEEE
Confidence            3334456899988887777761 000011122256889999999999887654   468899998642     4789999


Q ss_pred             cCCHHHHHHHHHHHHHhHh
Q psy407           87 ADTRESMIQWMNALSLASI  105 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~  105 (160)
                      |.|..|+.+||.+|+.|+.
T Consensus       104 A~s~~ER~rwi~dL~esI~  122 (140)
T 3qwm_A          104 APNPQDRKKFTDDLRESIA  122 (140)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999874

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.33  E-value=2e-06  Score=72.98  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc--cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE--EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~--e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      -|.|+.+..    +.++.|||.|-+..|.|     -+...  .-...+.|+|.++.|.....+   ..+|.|.|.++. +
T Consensus       247 ~g~l~~~~~----~~~~~r~~fLF~d~Ll~-----~k~~~~~~y~~k~~i~L~~l~v~~~~~~---~~~~~f~i~~~~-~  313 (434)
T 3mpx_A          247 EGTLMKVTG----KNRRPRHLFLMNDVLLY-----TYPQKDGKYRLKNTLAVANMKVSRPVME---KVPYALKIETSE-S  313 (434)
T ss_dssp             CCEEEEEET----TEEEEEEEEEESSEEEE-----EEECTTSCEEEEEEEEC-----CCCCCT---TSCSEEEEECSS-C
T ss_pred             cceEEEEeC----CCceEEEEEEECCEEEE-----EEecCCCeEEEEEEEEcCCcEEEecCCC---CCCeeEEEecCC-e
Confidence            355555543    35889999999998887     54322  234778999999888654332   468899998754 6


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           82 TYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      +|.|.|.|++++++||++|+.|+..
T Consensus       314 ~~~l~a~s~~ek~~W~~~i~~ai~e  338 (434)
T 3mpx_A          314 CLMLSASSCAERDEWYGCLSRALPE  338 (434)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHC---
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999754

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=98.26  E-value=4.5e-06  Score=69.07  Aligned_cols=81  Identities=19%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCc-----------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEE
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFE-----------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~-----------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      .++.|+|.|-+..|.+     -|...           .-..++.|+|.++.|....+.+  .-+++|.|.+.+...|.|.
T Consensus       258 ~~~~~~~fLF~d~Ll~-----~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~--~~~~~F~i~~~~~~~~~l~  330 (354)
T 1dbh_A          258 AKHERHIFLFDGLMIC-----CKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN--EYKHAFEIILKDENSVIFS  330 (354)
T ss_dssp             CSSCEEEEEESSEEEE-----EEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSS--SCCSEEEECCTTSCCEEEE
T ss_pred             cCceEEEEEeCCEEEE-----EecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCccc--ccCccEEEecCCCCEEEEE
Confidence            6789999999888876     33221           1235689999999988865432  4578999987655789999


Q ss_pred             cCCHHHHHHHHHHHHHhHh
Q psy407           87 ADTRESMIQWMNALSLASI  105 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~  105 (160)
                      |.|++++++||.+|+.|..
T Consensus       331 a~s~~ek~~W~~~i~~~~~  349 (354)
T 1dbh_A          331 AKSAEEKNNWMAALISLQY  349 (354)
T ss_dssp             CSSHHHHHHHHHHHHHHHT
T ss_pred             eCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999863

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=98.12  E-value=2e-05  Score=64.21  Aligned_cols=92  Identities=9%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeC
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA   78 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~   78 (160)
                      |-++.+......+..+.|+|.|-+..|.+     -+...      .-..++.|+|.++.|....+.    .++.|.|...
T Consensus       207 ~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~-----~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~----~~~~F~i~~~  277 (311)
T 1nty_A          207 ESFQVWDPKTLIRKGRERHLFLFEMSLVF-----SKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG----DPCKFALWVG  277 (311)
T ss_dssp             EEEEEECSSSSSCCEEEEEEEEESSEEEE-----EEEEECTTCCEEEEEEEEEEGGGEEEECCCTT----CTTEEEEEES
T ss_pred             eeEEEEcCcccccccceeEEEeccCeEEE-----EEeeccCCCCceeEEeeeeeccceeeEEccCC----CCceEEEEeC
Confidence            33444443333456799999999988887     43221      123578899999988765432    3457888752


Q ss_pred             ----CceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           79 ----NMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        79 ----~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                          ....|.|+|.|++++++||.+|+.|..
T Consensus       278 ~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~  308 (311)
T 1nty_A          278 RTPTSDNKIVLKASSIENKQDWIKHIREVIQ  308 (311)
T ss_dssp             SSCCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEECCCHHHHHHHHHHHHHHHh
Confidence                246799999999999999999999864

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.10  E-value=3.2e-05  Score=66.35  Aligned_cols=96  Identities=10%  Similarity=0.108  Sum_probs=68.8

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc----cCccceEEEcCCeEEEecCCCCc----cCceeeEEE
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE----EEKLLGSILLPSYKISPCSSDDK----VFRKFSFKA   75 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~----e~~~~g~I~L~~~~V~~~~~~~~----~~~~~~F~i   75 (160)
                      .|.|+.+..+  .+..+.|+|.|-+..|.+     -|...    .-..++.|+|.++.|....+.+.    ..-+++|+|
T Consensus       337 ~G~l~~~~~~--~~~~~~r~~fLF~d~Ll~-----~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i  409 (466)
T 2pz1_A          337 SGELTRVTQP--QAKSQQRMFFLFDHQLIY-----CKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRL  409 (466)
T ss_dssp             EEEEEEECTT--TCCEEEEEEEEETTEEEE-----EEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEE
T ss_pred             eeeEEEEecC--CCCeeEEEEEEECCEEEE-----EEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEE
Confidence            3555555432  235789999999988887     44221    13467899999999887654211    123579999


Q ss_pred             eeCC-ceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           76 EHAN-MRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        76 ~~~~-~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .+.. .+.|.|+|.|.++..+||++|+.|...
T Consensus       410 ~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~  441 (466)
T 2pz1_A          410 HRGATGDSHLLCTRKPEQKQRWLKAFAREREQ  441 (466)
T ss_dssp             ECSSSCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            8643 468999999999999999999999754

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.04  E-value=3e-05  Score=56.14  Aligned_cols=81  Identities=7%  Similarity=0.048  Sum_probs=55.7

Q ss_pred             eEEEEEEeCCeEEEcccCCCCC--CccCccceEEEcCCeE-EEecCCC-C------ccCceeeEEEeeCC-ceEEEEEcC
Q psy407           20 HNVYLLLATHVMVFSPEISGLG--FEEEKLLGSILLPSYK-ISPCSSD-D------KVFRKFSFKAEHAN-MRTYYFAAD   88 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~--~~e~~~~g~I~L~~~~-V~~~~~~-~------~~~~~~~F~i~~~~-~r~~~l~Ae   88 (160)
                      |.|+|+|.+....+    ||.+  .......+.|.|.... |...... +      ......+|.|...+ .++.+|.|+
T Consensus        29 k~r~f~l~~~~~~~----w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~  104 (131)
T 1mai_A           29 RERFYKLQEDCKTI----WQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAP  104 (131)
T ss_dssp             EEEEEEECTTSSEE----EECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECS
T ss_pred             eeEEEEECCCCCEE----EeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeC
Confidence            67889998653333    1532  1134478999999964 4443211 0      11245699998865 379999999


Q ss_pred             CHHHHHHHHHHHHHhH
Q psy407           89 TRESMIQWMNALSLAS  104 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~  104 (160)
                      |+++.+.|+..|+...
T Consensus       105 s~~e~~~Wv~gL~~L~  120 (131)
T 1mai_A          105 SPADAQHWVQGLRKII  120 (131)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999999865

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=98.04  E-value=3e-05  Score=65.55  Aligned_cols=96  Identities=18%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCc----cCccceEEEcCCeEEEecCCCCc----cCceeeEEE
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFE----EEKLLGSILLPSYKISPCSSDDK----VFRKFSFKA   75 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~----e~~~~g~I~L~~~~V~~~~~~~~----~~~~~~F~i   75 (160)
                      .|.|+.+..+  .+..+.|+|.|-+..|.+     -+...    .-...+.|+|.++.|....+.+.    ..-+++|+|
T Consensus       260 ~G~l~~~~~~--~~k~~~r~~fLF~d~Ll~-----~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i  332 (402)
T 2dfk_A          260 TGEMAWIYQP--YGRNQQRVFFLFDHQMVL-----CKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKL  332 (402)
T ss_dssp             EEEEEEESST--TCCCEEEEEEEETTEEEE-----EEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEE
T ss_pred             eceEEEEecc--CCceEEEEEEeeCCEEEE-----EEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEE
Confidence            3455554432  235789999999988887     44221    12467899999999877644211    123578999


Q ss_pred             eeCC-ceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           76 EHAN-MRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        76 ~~~~-~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                      .+.. ...|.|+|.|+++...||.+|+.|...
T Consensus       333 ~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~  364 (402)
T 2dfk_A          333 HNKETEEVHLFFAKKLEEKIRWLRAFREERKM  364 (402)
T ss_dssp             EESSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            8753 468999999999999999999998653

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.97  E-value=6.6e-05  Score=63.35  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCCCccCceeeEEEee
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH   77 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~   77 (160)
                      .+.++.|+|.|-++.|.+     -+...+                  ....+.|.|.++.|..+...     ...|.|.+
T Consensus       307 ~~~~~~~~~fLF~d~Ll~-----~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~-----~~~f~l~~  376 (418)
T 3t06_A          307 KDKTLDLHVLLLEDLLVL-----LQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD-----KRAFFIIC  376 (418)
T ss_dssp             TTBCCEEEEEEESSEEEE-----EEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC-----SSEEEEEE
T ss_pred             CCCeEEEEEEecCCEEEE-----EEEcCCceEEeecccccccCCCcccccCCceechhceecccccc-----CceEEEEe
Confidence            346889999999988887     432211                  12357899999998865432     33677765


Q ss_pred             CC----ceEEEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           78 AN----MRTYYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        78 ~~----~r~~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      ..    .++|.|.|.|.++.+.||++|+.|+....+
T Consensus       377 ~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~  412 (418)
T 3t06_A          377 TSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHH  412 (418)
T ss_dssp             CCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred             cCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCcc
Confidence            32    269999999999999999999999755443

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=97.95  E-value=7e-05  Score=57.46  Aligned_cols=81  Identities=17%  Similarity=0.159  Sum_probs=57.3

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCccCc--------cceEEEcCCeEEEecCCCCccCceeeEEEee--CCceEEEEEc
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFEEEK--------LLGSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAA   87 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~e~~--------~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~--~~~r~~~l~A   87 (160)
                      .|+.+|++|-+..|.|     -+ +.+.+        ....|.|.++.|..+..+    .+-.|-|.+  .+.+.|-|.|
T Consensus        85 ~~~d~~~fLf~D~Ll~-----~~-~~~~ky~~~~~~~~~pvi~L~~~~vre~a~d----~~~~fli~~~~~g~~~yel~a  154 (185)
T 2lg1_A           85 RLKEVQAVLLTDILVF-----LQ-EKDQKYIFASLDQKSTVISLKKLIVREVAHE----EKGLFLISMGMTDPEMVEVHA  154 (185)
T ss_dssp             CEEEEEEEEESSEEEC-----CE-EETTEEECCCCSSSCSEEESSSCEEECCSSC----SSEEEEECCSSSCCCCEEEEC
T ss_pred             CeeeEEEEeecCEEEE-----EE-ecCCEEEEEcccCCCCeEeecceEEeccCCC----CCeEEEEEecCCCCeEEEEEc
Confidence            7899999999888876     22 11211        236789999998776442    122344432  2357899999


Q ss_pred             CCHHHHHHHHHHHHHhHhhcc
Q psy407           88 DTRESMIQWMNALSLASILQN  108 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~~~~~  108 (160)
                      .|.+|++.||.+|+.|+..-.
T Consensus       155 ~s~~er~~W~~~I~~Ai~~~~  175 (185)
T 2lg1_A          155 SSKEERNSWIQIIQDTINTLN  175 (185)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999985543

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=97.95  E-value=8.1e-05  Score=61.80  Aligned_cols=81  Identities=19%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCc----------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeC-CceEEEEE
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFE----------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-NMRTYYFA   86 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~----------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~-~~r~~~l~   86 (160)
                      .++.|+|.|-+..|.+     -|...          .-..++.|+|..+.|.....    +.++.|.|... ....|.|.
T Consensus       236 k~~~r~~fLF~d~Ll~-----~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~----~~~~~F~i~~~~~~~~~~l~  306 (353)
T 1kz7_A          236 KPMQRHLFLHEKAVLF-----CKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK----GDTKKFEIWYNAREEVYIIQ  306 (353)
T ss_dssp             SCEEEEEEEESSEEEE-----EEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT----TBTTEEEEEETTTTEEEEEE
T ss_pred             CcceeEEEEECCEEEE-----EEeccccccCCCCCCeEEEEEEeEcccceeeEcCC----CCCceEEEEECCCCcEEEEE
Confidence            4789999999888877     43221          12356789999988866433    23568998763 35789999


Q ss_pred             cCCHHHHHHHHHHHHHhHhhc
Q psy407           87 ADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      |.|++++++||.+|+.|...+
T Consensus       307 a~s~~ek~~W~~~i~~ai~~~  327 (353)
T 1kz7_A          307 APTPEIKAAWVNAIRKVLTSQ  327 (353)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987554

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=97.88  E-value=0.0001  Score=61.03  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCCCccCceeeEEEee
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH   77 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~   77 (160)
                      .+.++.|+|.|-++.|.+     -+...+                  ....+.|+|.++.|..+..     .+.+|.|.+
T Consensus       265 ~~~~~~~~~fLF~d~Ll~-----~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~-----~~~~f~i~~  334 (368)
T 1xcg_A          265 KDKTLDLHVLLLEDLLVL-----LQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT-----DKRAFFIIC  334 (368)
T ss_dssp             SSCCCEEEEEEESSEEEE-----EEECSSCEECCC-------------CCCSEEEGGGEEEEECSS-----CSSEEEEEE
T ss_pred             CCCeeEEEEEcccccHHH-----hhcccccceeeeccccccCCCCcccCcCCceEccceeeecccC-----CCceEEEEE
Confidence            356899999999888877     332211                  1236789999998877532     134677765


Q ss_pred             CC----ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           78 AN----MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        78 ~~----~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      ..    .+.|.|+|.|+++++.||.+|+.|..
T Consensus       335 ~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~  366 (368)
T 1xcg_A          335 TSKLGPPQIYELVALTSSDKNTWMELLEEAVR  366 (368)
T ss_dssp             CCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            32    47899999999999999999999863

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.86  E-value=9.5e-05  Score=61.78  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=58.8

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCCCccCceeeEEEee-
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH-   77 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~-   77 (160)
                      +.++.|+|.|-+..|.+     -+...+                  ....+.|+|.++.|..+..+    .+..|.|.. 
T Consensus       270 ~~~~~~~~fLF~d~Ll~-----~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d----~~~~f~i~~~  340 (385)
T 1txd_A          270 DKTIDLYTLLLEDILVL-----LQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD----NKALFVISMS  340 (385)
T ss_dssp             SCBCCEEEEEESSEEEE-----EEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-----CCEEEEEEEC
T ss_pred             CCeEEEEEEecCCeeEE-----EEecCCeeEEeeccccccccCCCCcCCCCceecccccccccccC----CceEEEEEEc
Confidence            46889999999888876     332111                  12468899999988775432    233565553 


Q ss_pred             -CCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           78 -ANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        78 -~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                       .+.+.|.|.|.|.++.++||++|+.|....
T Consensus       341 ~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~  371 (385)
T 1txd_A          341 DNGAQIYELVAQTVSEKTVWQDLICRMAASV  371 (385)
T ss_dssp             SSCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence             235789999999999999999999997544

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.85  E-value=8.3e-05  Score=61.74  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=61.2

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCc---------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeC----CceEE
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFE---------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA----NMRTY   83 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~---------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~----~~r~~   83 (160)
                      +..+.|+|.|-+..|.+     -+...         .-...+.|+|..+.|.....    +.++.|.|.+.    ....|
T Consensus       226 ~~~~~r~~fLF~d~Ll~-----~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~----~~~~~F~i~~~~~~~~~~~~  296 (354)
T 2rgn_B          226 SRGRERRVFLFEQIIIF-----SEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQ----GDPCRFALTSRGPEGGIQRY  296 (354)
T ss_dssp             CCCCEEEEEEESSEEEE-----EEECC--------CCEEEEEEEEGGGEEEEESGG----GCTTEEEEEEECSSSCEEEE
T ss_pred             CCCceEEEEEeCCcEEE-----EEeccCCCCCCCCCceEEcceeeccceeeeeccC----CCCceEEEEecCCCCCceEE
Confidence            46789999999888877     33221         12456789999988876432    23467888752    24789


Q ss_pred             EEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           84 YFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        84 ~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .|.|.|.++.++||.+|+.|...+
T Consensus       297 ~l~a~s~~ek~~W~~~i~~ai~~~  320 (354)
T 2rgn_B          297 VLQAADPAISQAWIKHVAQILESQ  320 (354)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997654

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.78  E-value=0.00016  Score=59.95  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=56.6

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCCCccCceeeEEEee-
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH-   77 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~-   77 (160)
                      +.++.|+|.|-++.|.|     -+...+                  ......|.|.++.|..+..+    .+..|.|.. 
T Consensus       272 ~~~~~~~~fLF~d~Ll~-----~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~----~~~~~~i~~~  342 (377)
T 3p6a_A          272 DKAVEVHVLLLDDLLLL-----LQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD----HKAFYVLFTW  342 (377)
T ss_dssp             SCEEEEEEEEESSEEEE-----EEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTTC----TTEEEEEETT
T ss_pred             CCeEEEEEEeeCCEEEE-----EEEcCceeEEeecccccccCccccCCCCCeEechhhhccccccc----cceeEEEecC
Confidence            47899999999988887     332211                  01234799999888876442    222344433 


Q ss_pred             -CCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           78 -ANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        78 -~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                       .+...|.|.|.|.+|++.||+.|+.|+.
T Consensus       343 ~~~~~~~~l~A~s~~ek~~W~~~I~~ai~  371 (377)
T 3p6a_A          343 DQEAQIYELVAQTVSERKNWCALITETAG  371 (377)
T ss_dssp             CTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence             2457899999999999999999999974

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.72  E-value=0.00014  Score=59.77  Aligned_cols=80  Identities=16%  Similarity=0.198  Sum_probs=59.2

Q ss_pred             eEEEEEEeCCeEEEcccCCCCCCcc-C----c-cceEEEcCCeEEEecCCCCc-------------cCceeeEEEeeC--
Q psy407           20 HNVYLLLATHVMVFSPEISGLGFEE-E----K-LLGSILLPSYKISPCSSDDK-------------VFRKFSFKAEHA--   78 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~~~e-~----~-~~g~I~L~~~~V~~~~~~~~-------------~~~~~~F~i~~~--   78 (160)
                      +.|+|.|-+..|.+     -+.... .    . .++.|+|.++.|....+.+.             ...++.|.|.+.  
T Consensus       244 ~~~~~fLF~d~Ll~-----~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~  318 (346)
T 2z0q_A          244 VKLHVFLFQEVLVI-----TRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNG  318 (346)
T ss_dssp             CEEEEEEESSEEEE-----EEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCG
T ss_pred             cEEEEEECCCcEEE-----EEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccCCcccccceEEEEecC
Confidence            78999999888877     443211 1    1 46789999999988654210             023678999753  


Q ss_pred             -CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           79 -NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        79 -~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                       ...+|.|.|.|+++.++||.+|+.|.
T Consensus       319 ~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          319 SQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             GGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHhh
Confidence             24799999999999999999999985

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.71  E-value=0.00022  Score=62.72  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCCCccCceeeEEEeeC
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA   78 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~   78 (160)
                      +.++.|||+|-++.|.|     -+...+                  ......|.|.++.|..+..+     ...|.+...
T Consensus       425 ~k~~~r~~fLF~D~LL~-----~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d-----~~~ffli~~  494 (536)
T 3odw_A          425 DKAVEVHVLLLDDLLLL-----LQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD-----HKAFYVLFT  494 (536)
T ss_dssp             ---CEEEEEEESSEEEE-----EEEETTEEECCCC------------CCCSEEEGGGEEEEECTTC-----TTEEEEEEC
T ss_pred             CCeeEEEEEEcCCEEEE-----EEEcCCeEEEeecccccccccccccccCceeecccceeeccccc-----CCceEEEec
Confidence            46899999999888877     332111                  11234799999988886542     124444432


Q ss_pred             ---CceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           79 ---NMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        79 ---~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                         +...|.|.|.|.+|++.||+.|+.|+...
T Consensus       495 ~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~  526 (536)
T 3odw_A          495 WDQEAQIYELVAQTVSERKNWCALITETAGSL  526 (536)
T ss_dssp             ---CCCEEEEECSSHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCceEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence               45789999999999999999999997443

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.65  E-value=6e-05  Score=59.24  Aligned_cols=45  Identities=11%  Similarity=0.030  Sum_probs=33.1

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCC
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPS   55 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~   55 (160)
                      .|+|.+-  .+-.+.||||||||++++|.|     |+...+....|.+.-.+
T Consensus        24 ~g~l~~~--~~~~~~w~~rw~vl~~~~~~~-----~~~~~~~~k~G~L~K~g   68 (228)
T 3tfm_A           24 HSFLYMN--GGLMNSWKRRWCVLKDETFLW-----FRSKQEALKQGWLHNNG   68 (228)
T ss_dssp             EEEEEEC--CTTTCCCEEEEEEEETTEEEE-----ESSCCCSSEEEEEEECG
T ss_pred             EEEEeec--CcccccceEEEEEEeCCEEEE-----eccCCCcceEEEEEEEC
Confidence            3555443  455678999999999999999     88877666666665444

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.60  E-value=0.00013  Score=68.79  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             eEEEEEEeCCeEEEcccCCCCCCc-----------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcC
Q psy407           20 HNVYLLLATHVMVFSPEISGLGFE-----------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   88 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~~~-----------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Ae   88 (160)
                      +.|+|.|-++.|.+     -|...           .-..++.|+|.++.|....+.+  .-++.|.|.+.+...|.|.|.
T Consensus       457 ~~r~~FLF~D~Ll~-----~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~--~~~~~F~I~~~~~~~~~L~A~  529 (1049)
T 3ksy_A          457 HERHIFLFDGLMIC-----CKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN--EYKHAFEIILKDENSVIFSAK  529 (1049)
T ss_dssp             SCEEEEEETTEEEE-----EECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSS--SCCSEEEECCTTSCCEEEECS
T ss_pred             ceEEEEeeCCeEEE-----EEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCc--cccceEEEEcCCCCEEEEeCC
Confidence            78999999888887     44331           1356789999998887665432  457899998766568999999


Q ss_pred             CHHHHHHHHHHHHHhHh
Q psy407           89 TRESMIQWMNALSLASI  105 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~~  105 (160)
                      |++++++||++|+.+..
T Consensus       530 S~eeK~~Wi~~I~~~q~  546 (1049)
T 3ksy_A          530 SAEEKNNWMAALISLQY  546 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988753

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.59  E-value=9e-06  Score=69.95  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccC-------------------ccceEEEcCCeEEEecCCCCccCceeeEEEee
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEE-------------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEH   77 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~-------------------~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~   77 (160)
                      +.++.|||.|-+..|.+     .+-....                   -.++.|+|.++.|....+.  ...+++|.|.+
T Consensus       263 ~~~~~~~~fLF~d~Ll~-----~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~--~~~~~~F~i~~  335 (510)
T 3jzy_A          263 KSNKELHGFLFNDFLLL-----TYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDP--SSDEPVFHISH  335 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccceeEE-----eeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCC--Cccccceeeec
Confidence            45789999999888887     4422111                   1256788888887765332  24678999987


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .+ ++|.|+|.|++++.+||++|+.|....
T Consensus       336 ~~-~~~~l~a~s~~ek~~W~~~i~~ai~~~  364 (510)
T 3jzy_A          336 ID-RVYTLRTDNINERTAWVQKIKAASEQY  364 (510)
T ss_dssp             ------------------------------
T ss_pred             cc-eeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            64 789999999999999999999987544

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=97.52  E-value=0.0004  Score=57.77  Aligned_cols=84  Identities=10%  Similarity=0.023  Sum_probs=57.8

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCC-------------------ccCccceEEEcCCeEEEecCCCCccCceeeEEEeeC
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGF-------------------EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA   78 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~-------------------~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~   78 (160)
                      .-+.|++.|-++.|.+.    .|..                   ..-...+.|+|.++.|....+.+. .....|.|.+-
T Consensus       258 k~~~~~~fLF~d~lll~----~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~~~~~~~-~~~~~f~i~~~  332 (377)
T 1foe_A          258 KEPELAAFVFKTAVVLV----YKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADA-EANAVCEIVHV  332 (377)
T ss_dssp             SSCEEEEEEETTEEEEE----ECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTT-TSCCEEEEEEC
T ss_pred             ccceEEEEEcCCeEEEE----eccccccccccccccccccccCCCceeEeeeccccceEEEecCCCcc-chhhHHHHHhc
Confidence            45678888887765431    2321                   122467899999999988655332 22334777521


Q ss_pred             -------CceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           79 -------NMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        79 -------~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                             ..+.|.|+|.|.++.++||++|+.|...
T Consensus       333 ~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~  367 (377)
T 1foe_A          333 KSESEGRPERVFHLCCSSPESRKDFLKSVHSILRD  367 (377)
T ss_dssp             CBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhH
Confidence                   2478999999999999999999998754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.43  E-value=0.0011  Score=60.90  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=66.8

Q ss_pred             EEecCCCCC-CceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCc-------
Q psy407            9 ILNDNMAST-LCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-------   80 (160)
Q Consensus         9 ~~~~~~~~k-~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~-------   80 (160)
                      .++..++++ +=|..||||.-..|.+     ||++++..-+-.++|.+..+...... -..+++.|.|-.++.       
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  620 (772)
T 3zvr_A          547 TINNIGIMKGGSKEYWFVLTAENLSW-----YKDDEEKEKKYMLSVDNLKLRDVEKG-FMSSKHIFALFNTEQRNVYKDY  620 (772)
T ss_dssp             EESSSCCC---CCEEEEEEESSEEEE-----ESSTTCCCEEEEEECTTEEEEEC--------CEEEEEEETTSSCSBTTB
T ss_pred             eecccccccCCCccceeecccccccc-----ccchhhhcccccccccccccchhhhc-cccccccccccCCccccccchh
Confidence            333344433 4688999999999999     99988888888999999887766432 235788999987644       


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           81 RTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +..-|+|+|.++...|.+.+-.|.
T Consensus       621 ~~~~l~~~~~~~~~~~~~~~~~~~  644 (772)
T 3zvr_A          621 RQLELACETQEEVDSWKASFLRAG  644 (772)
T ss_dssp             SEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccccccchhhHHhhhhcc
Confidence            467899999999999999998873

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=96.96  E-value=0.0035  Score=50.60  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=45.0

Q ss_pred             ceEEEcCCeEEEecC-CCCccCceeeEEEeeC-CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           48 LGSILLPSYKISPCS-SDDKVFRKFSFKAEHA-NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        48 ~g~I~L~~~~V~~~~-~~~~~~~~~~F~i~~~-~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .+.|+|.-|.|+..- ..|  .++++|+|..+ +..+++|+|++.+++.+|+++|..++
T Consensus       205 ~~~ipL~m~~~tR~~~~~d--~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i  261 (263)
T 1z87_A          205 AKHVSLKMAYVSRRCTPTD--PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI  261 (263)
T ss_dssp             CEEEESSSEEEEEECCSSC--SSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccCcceeeeeeeccccC--CCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHh
Confidence            378999999887732 222  47899999887 45679999999999999999999875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=96.11  E-value=0.034  Score=50.47  Aligned_cols=78  Identities=12%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      ..|++|+|.|....+..     .- +. ..+...+.+.... |....    ....++|.+...+.++|++.+.|+.++.+
T Consensus       574 ~~~~rR~~~l~p~r~e~-----~~-e~-~~~~~l~~~~~v~~v~k~~----i~~~~~l~~~~k~~k~f~~~t~~~~~~~~  642 (689)
T 3v5w_A          574 TQWQRRYFYLFPNRLEW-----RG-EG-EAPQSLLTMEEIQSVEETQ----IKERKCLLLKIRGGKQFILQCDSDPELVQ  642 (689)
T ss_dssp             --CEEEEEEEETTEEEE-----EC-TT-SCCCEEEEGGGEEEEEEEE----SSSCEEEEEEETTTEEEEEECSSHHHHHH
T ss_pred             chhhhhccccCCCcccc-----cc-cC-CCCcceeeeccccccccCc----CCCCcceeeeecCCcEEEEECCChHHHHH
Confidence            47999999999988886     32 22 3455667777733 32221    24567899988888999999999999999


Q ss_pred             HHHHHHHhHh
Q psy407           96 WMNALSLASI  105 (160)
Q Consensus        96 Wi~aL~~a~~  105 (160)
                      |..+|+.+-.
T Consensus       643 W~~~i~~~~~  652 (689)
T 3v5w_A          643 WKKELRDAYR  652 (689)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999997654

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=95.57  E-value=0.053  Score=41.37  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=43.6

Q ss_pred             eEEEcCCeEEEe-cCCCCccCceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           49 GSILLPSYKISP-CSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        49 g~I~L~~~~V~~-~~~~~~~~~~~~F~i~~~~-~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ..|+|.=|.|+. ....|  .+...|+|..++ ..+.+|.|.+..+..+|+++|..++
T Consensus       121 ~~IPLkMayvtR~~~~tD--~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni  176 (178)
T 2adz_A          121 KHVSLKMAYVSRRCTPTD--PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI  176 (178)
T ss_dssp             EEEETTTCEEEEECCSSC--CSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHhccCCC--CCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence            579999998877 32223  367799998864 5689999999999999999999865

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=94.95  E-value=0.084  Score=37.51  Aligned_cols=84  Identities=14%  Similarity=0.169  Sum_probs=55.8

Q ss_pred             CCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-ceEEEE--EcCCHH-H
Q psy407           17 TLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYF--AADTRE-S   92 (160)
Q Consensus        17 k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-~r~~~l--~Aese~-e   92 (160)
                      +.=+.|++-|-+..|.+.+.---.+...-..+..|.|..+.|+....+   +.+..|+|..++ ...|.+  .|.|.+ .
T Consensus        23 ~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~---~d~~kFeiw~~~~~~~~il~~qA~s~e~~   99 (119)
T 1fho_A           23 EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD---EDTIVLQPQEPGLPSFRIKPKDFETSEYV   99 (119)
T ss_dssp             CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT---CCEEEEECCSTTCCCBCCCCCSSSSCSHH
T ss_pred             CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC---CCCcEEEEccCCCCceEEEeeecCCcHHH
Confidence            345678888887777763111000011134677999999999885431   223468987654 356777  899999 9


Q ss_pred             HHHHHHHHHHh
Q psy407           93 MIQWMNALSLA  103 (160)
Q Consensus        93 ~~~Wi~aL~~a  103 (160)
                      .+.||+.|+..
T Consensus       100 K~~Wv~~I~~~  110 (119)
T 1fho_A          100 RKAWLRDIAEE  110 (119)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999999983

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=87.82  E-value=4.1  Score=37.57  Aligned_cols=90  Identities=9%  Similarity=0.075  Sum_probs=55.9

Q ss_pred             eEEEEecCCCCCCceEEEEEEeC--CeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCC----C-------------
Q psy407            6 FLIILNDNMASTLCHNVYLLLAT--HVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSD----D-------------   65 (160)
Q Consensus         6 ~~~~~~~~~~~k~WkkRWFVL~~--~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~----~-------------   65 (160)
                      -|+.+.+++..  .++|.|.|+.  ..|+|     ....++.  ...|.|.... |......    +             
T Consensus        27 ~~~K~~~~s~~--~~~~~f~lD~d~~~L~W-----~~~~k~~--~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~   97 (816)
T 3qr0_A           27 KFLKWEEGSSG--FIEILLRVDPKGYFLYW-----KIEGKED--TQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSS   97 (816)
T ss_dssp             EEEEECTTCCC--CEEEEEEECTTSCEEEE-----CCTTCSS--CEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCT
T ss_pred             eEEEECCCCCc--ceeEEEEEcCCCCEEEE-----eCCCCCc--CcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCC
Confidence            45666665542  3789999995  46776     4322222  3678887743 4332211    0             


Q ss_pred             -ccCceeeEEEeeCCc----eEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           66 -KVFRKFSFKAEHANM----RTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        66 -~~~~~~~F~i~~~~~----r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                       .....-+|.|.....    +...|.|.++++.+.|+..|+.-+
T Consensus        98 ~~~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~  141 (816)
T 3qr0_A           98 NIPLQDKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYA  141 (816)
T ss_dssp             TSCHHHHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cccccccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHH
Confidence             000234788877532    345999999999999999998854

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A

Probab=85.54  E-value=4.8  Score=30.89  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           71 FSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        71 ~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ..|.|........-|.|.|+.+...|+..|+.-.
T Consensus       116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~Ll  149 (203)
T 3a98_B          116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALL  149 (203)
T ss_dssp             GEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEecCCCceEEEecCCHHHHHHHHHHHHHHh
Confidence            4899887655789999999999999999999875

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=82.36  E-value=5.6  Score=36.51  Aligned_cols=78  Identities=9%  Similarity=0.007  Sum_probs=48.9

Q ss_pred             eEEEEEEeCC--eEEEcccCCCCCCccCccceEEEcCCeE-EEecCCC----C-------------ccCceeeEEEeeCC
Q psy407           20 HNVYLLLATH--VMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSD----D-------------KVFRKFSFKAEHAN   79 (160)
Q Consensus        20 kkRWFVL~~~--~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~----~-------------~~~~~~~F~i~~~~   79 (160)
                      ++|.|.|+..  .|+|     +...   +..+.|.|.... |......    +             ......+|.|....
T Consensus        34 k~~~frLd~d~~~l~W-----~~~~---k~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~~~e~~~fTIvyg~  105 (799)
T 2zkm_X           34 SPVILRVDPKGYYLYW-----TYQS---KEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGP  105 (799)
T ss_dssp             EEEEEEECTTSCEEEE-----EETT---SCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTEEEEEECS
T ss_pred             eEEEEEEcCCCCEEEE-----ccCC---CcCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCcccccccceEEEEECC
Confidence            5788999743  5666     3211   224688887753 4332100    0             00122378887753


Q ss_pred             c----eEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 M----RTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 ~----r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .    +...|.|.++++.+.|+..|+.-..
T Consensus       106 ~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~  135 (799)
T 2zkm_X          106 DMVDLTFHNFVSYKENVGKAWAEDVLALVK  135 (799)
T ss_dssp             SSSSCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             CccceeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            2    3689999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	2e-11
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	7e-09
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	2e-08
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	6e-08
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	4e-07
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	4e-07
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	6e-07
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	1e-06
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-06
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	2e-06
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	2e-06
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	8e-06
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	1e-05
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	1e-05
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	2e-05
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	2e-05
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-05
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	3e-05
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	4e-05
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	4e-05
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	4e-05
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	6e-05
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	1e-04
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	1e-04
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-04
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	3e-04
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	5e-04
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	6e-04
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	0.002
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	0.003

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 2e-11
 Identities = 32/62 (51%), Positives = 38/62 (61%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  
Sbjct: 45  REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 104

Query: 103 AS 104
           AS
Sbjct: 105 AS 106

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 7e-09
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 48  LGSILLPSYKISPCSSDDKV---FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 104
           LG+I L    ++   S+        +  F+   A+   Y+  A T +   +W+ A+ +AS
Sbjct: 44  LGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 103

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 3/105 (2%)

Query: 10  LNDNMASTLCHNVYLLLATHVMVFSPEIS-GLGFEEEKLLGSILLPSYKISPC-SSDDKV 67
            +    +       LLL   V      +   +  +  +   SI L +          +  
Sbjct: 33  ASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMP 92

Query: 68  FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
            +  +F  +  N   Y            W+  +    +    S+G
Sbjct: 93  EKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC-VDSGPSSG 136

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVF-RKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
           ++++  G   +  Y +   ++  K   +   F+    + R Y F A + +   +W+  L 
Sbjct: 143 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 202

Query: 102 LA 103
             
Sbjct: 203 FI 204

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-07
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
            ++ +L  +I LPS K+S    ++++     +K + A   ++Y +A + E   QW+  LS
Sbjct: 37  SQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQ-SWYLSASSAELQQQWLETLS 95

Query: 102 LAS 104
            A+
Sbjct: 96  TAA 98

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 4e-07
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVF------RKFSFKAEHANMRTYYFAADTRESMIQ 95
            EE + +G   L    +S    +          +   FK    +   YY  A ++    +
Sbjct: 48  KEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAE 107

Query: 96  WMNALSLAS 104
           W+ A+   +
Sbjct: 108 WIEAIKKLT 116

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.7 bits (102), Expect = 6e-07
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 43  EEEKLLGSILLPSYKISPCS------SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 96
           +  K    +                 + D   +K   + + AN   +   A     M QW
Sbjct: 51  KGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQW 110

Query: 97  MNALSLAS 104
           + +L   S
Sbjct: 111 VTSLKAQS 118

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 27/93 (29%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN----------------------- 79
           +  + +G++LL + +I    S       F FK  H                         
Sbjct: 42  KNGQWVGTVLLNACEIIERPSKK---DGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLP 98

Query: 80  MRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
                  A +      WM+AL LA +    S+G
Sbjct: 99  SSYLIIRATSESDGRCWMDALELA-LKSGPSSG 130

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 49  GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ 107
             I L             +  + +        RT+Y  AD+ E M  W+ A+S A + Q
Sbjct: 44  RVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 102

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 47  LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
               + L            K  +K  FK   ++   Y F A   E M  W+ A+S A
Sbjct: 52  SEVPVSLKEAICEVALDYKK--KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------AEHANMRTYYFAADTRESMI 94
            E+ K  G + LP   I   +++ +   KF F+              +Y   A ++  M 
Sbjct: 42  EEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEME 101

Query: 95  QWMNALSLASILQNSSTG 112
           +W+  L         S+G
Sbjct: 102 EWVKFLRRV-AGSGPSSG 118

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 8e-06
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 45  EKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           ++  G   +  Y +   ++  K  +K   F+    + R Y F A + +   +W+  L   
Sbjct: 50  KQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 109

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 53  LPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           L   + S    D    R   F       RT+Y  A T     +W+  L   
Sbjct: 47  LDLTECSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWK 96

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 19/85 (22%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVF------------------RKFSFKAEHANMRTYY 84
            +++  G I L +  I       K                     +   +    N   Y 
Sbjct: 40  TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 99

Query: 85  FAADTRESMIQWMNALSLASILQNS 109
            +A + E   +WM ++  ASI ++ 
Sbjct: 100 ISAPSPEEKEEWMKSIK-ASISRDP 123

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
             ++  GSI L S      ++     R+F+F+ +  +  +Y  AAD+   M +W+  L+ 
Sbjct: 65  ISKEPKGSIFLDSCMGVVQNNKV---RRFAFELKMQDKSSYLLAADSEVEMEEWITILNK 121

Query: 103 ASILQNSSTGWEDRRLNNEDNDS 125
              L   +   E R  ++ ++D 
Sbjct: 122 ILQLNFEAAMQEKRNGDSHEDDE 144

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-05
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 7/53 (13%)

Query: 61  CSSDDKVFRKFSFKAEHANM-------RTYYFAADTRESMIQWMNALSLASIL 106
                 +  K  F   +          R    A +T+E +  W  +   A + 
Sbjct: 57  DVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVY 109

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 44  EEKLLGSILLPSYKISPCSSDDKVFRK----FSFKAEHANMRTYYFAADTRESMIQWMNA 99
           + +  G I L   +     +      K     +F       R Y F A    S  QW++ 
Sbjct: 46  DTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDR 105

Query: 100 LSLASILQNSSTG 112
           +  + +    S+G
Sbjct: 106 IQ-SCLSSGPSSG 117

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 43  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 102
            +    G I L    ++     D   R F FK      + ++F A   E    W+  ++ 
Sbjct: 40  SDNSPKGMIPLKGSTLT-SPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINK 98

Query: 103 A 103
           A
Sbjct: 99  A 99

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 23/63 (36%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
            ++ +    + L  Y +        +    +F        T  FA+D  +  I W+ A+ 
Sbjct: 47  EKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMY 106

Query: 102 LAS 104
            A+
Sbjct: 107 RAT 109

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 11/57 (19%), Positives = 26/57 (45%)

Query: 48  LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 104
           +GS+ L        ++  +  +       +A  + Y+  A+ ++ +  W+ AL+ AS
Sbjct: 63  VGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 49  GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
            SI L S       +D K   K      +     +  AAD+      W  AL 
Sbjct: 51  RSIPLESCFNINKRADSK--NKHLVA-LYTRDEHFAIAADSEAEQDSWYQALL 100

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-05
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 56  YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
            +     + D   RK  FK    + + Y F A     M  W+  ++ A I    S+G
Sbjct: 68  ARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA-IASGPSSG 123

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 69  RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 103
           ++  F+    + RTY F A +      W++ +S  
Sbjct: 67  KESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 101

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 45  EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 104
            +    I + +  I    S+ K    F             F A+ R+ M+ W+  +  +S
Sbjct: 52  SEEEQPISVNACLIDISYSETKRKNVFRLTTSD---CECLFQAEDRDDMLAWIKTIQESS 108

Query: 105 ILQNSSTGWE-----DRRLNNEDN 123
            L    TG        RR+   +N
Sbjct: 109 NLNEEDTGVTNRDLISRRIKEYNN 132

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 69  RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 110
             + F+  +      Y  + T E   +W++ L    I  NS 
Sbjct: 97  FPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLK-NVIRYNSD 136

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNAL 100
              + L G + +P+ +I+            FS         +   AAD++E +  W+  +
Sbjct: 35  TSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKI 94

Query: 101 SLAS 104
              +
Sbjct: 95  REVA 98

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 54  PSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG 112
           P    +     D+      F+  H  M  Y F AD   S  +W++A      +   S+G
Sbjct: 52  PLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG-TVSGPSSG 109

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 6e-04
 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 44  EEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANM---RTYYFAADTRESMIQWMNA 99
           ++       L ++          +  R  +F              F  +T E   +W  A
Sbjct: 44  QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTA 103

Query: 100 LSLAS 104
           +   +
Sbjct: 104 IQTVA 108

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 5/63 (7%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 42  FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 101
             +     ++ + +  +     +D+  R           ++    A++++   +W+  ++
Sbjct: 41  RGDVAGGLAMDIDNCSVMAVDCEDR--RYCFQITSFDGKKSSILQAESKKDHEEWICTIN 98

Query: 102 LAS 104
             S
Sbjct: 99  NIS 101

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 77  HANMRTYYFAADTRESMIQWMNALSLASILQNSST 111
               RT+ F  +  E    W++ L  A   Q+ ++
Sbjct: 64  VTTQRTFVFRVEKEEERNDWISILLNALKSQSLTS 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.9
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.88
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.87
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.87
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.86
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.86
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.86
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.85
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.85
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.84
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.84
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.83
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.83
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.82
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.81
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.81
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.81
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.8
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.8
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.78
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.78
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.77
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.76
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.74
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.73
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.72
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.72
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.3
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	99.01
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	99.01
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.89
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.86
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.74
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.35
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.2
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.08
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.89
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	97.55
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.53
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	93.65
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	93.35
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	80.01

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-23  Score=143.56  Aligned_cols=92  Identities=24%  Similarity=0.414  Sum_probs=78.2

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCC---eEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATH---VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~---~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      |+++...++  .+.|+||||||+++   .|+|     |+++++..+.|.|+|.+|.|.........+++|+|+|.+++ +
T Consensus         4 ~G~L~~~~~--~k~W~krwfvL~~~~~~~ly~-----~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~-r   75 (99)
T d2coca1           4 CGPLRLSES--GETWSEVWAAIPMSDPQVLHL-----QGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-Q   75 (99)
T ss_dssp             EEEEEEESS--SSCEEEEEEECCTTCTTCEEE-----ECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT-E
T ss_pred             EEEEEccCC--CCCccEEEEEEecCCccEEEE-----ECcCccccccccccccceeeeecccccccCCceEEEEEcCC-c
Confidence            555555543  47899999999976   5888     99999999999999999998776554445789999998864 8


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|+|+|+|++|+++||++|++|+
T Consensus        76 ~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          76 SWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999986

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.7e-23  Score=145.15  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeC----
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA----   78 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~----   78 (160)
                      +.|+|.+.+.+...+.||+|||||++++|+|     |+++++..+.|.|+|.+|.|..+.. +..+++|+|+|.++    
T Consensus         5 k~GwL~k~~~~~~~~~WkkRwFvL~~~~L~y-----yk~~~~~~~~~~i~l~~~~v~~~~~-~~~~~~~~F~l~~~~~~~   78 (111)
T d2dyna_           5 RKGWLTINNIGIMKGGSKEYWFVLTAENLSW-----YKDDEEKEKKYMLSVDNLKLRDVEK-GFMSSKHIFALFNTEQRN   78 (111)
T ss_dssp             EEEEEEETTCCTTTTSSEEEEEEEESSEEEE-----ESSTTCCCEEEEEECTTEEEEEECC-CSTTCSEEEEEEESSCSC
T ss_pred             EEeeEEEECCCCCcCCceEEEEEEECCEEEE-----EcchhhcccccccccccceeEeecc-ccccccccEEeeeccccc
Confidence            5688886544444567999999999999999     9999999999999999999888754 33578999999764    


Q ss_pred             ---CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           79 ---NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        79 ---~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                         +.++|+|+|+|++|+.+||+||.+|+
T Consensus        79 ~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          79 VYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             SBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence               34789999999999999999999986

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=138.95  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=77.2

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEE
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTY   83 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~   83 (160)
                      .|+|.  +.....+.|++|||||++++|+|     |+++.+..|.|.|+|.+|.+......  .+++++|+|.+++ ++|
T Consensus         7 eG~L~--K~~~~~k~Wk~R~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~~v~~~~~--~~~~~~F~i~~~~-r~~   76 (100)
T d1faoa_           7 EGYLT--KQGGLVKTWKTRWFTLHRNELKY-----FKDQMSPEPIRILDLTECSAVQFDYS--QERVNCFCLVFPF-RTF   76 (100)
T ss_dssp             EEEEE--EECSSSCCEEEEEEEEETTEEEE-----ESSTTCSSCSEEEEGGGCCEEEEECS--SSSSSEEEEEETT-EEE
T ss_pred             EEEEE--EeCCCCCCceEEEEEEECCEEEE-----EeccCCccCceEEechheEEEEeccc--cccccccccccCC-eEE
Confidence            46665  34455778999999999999999     99999999999999999875443322  2678999999875 899


Q ss_pred             EEEcCCHHHHHHHHHHHHHhHh
Q psy407           84 YFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        84 ~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      +|+|+|++++++||++|++++.
T Consensus        77 ~l~a~s~~~~~~Wi~ai~~~i~   98 (100)
T d1faoa_          77 YLCAKTGVEADEWIKILRWKLS   98 (100)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999863

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.8e-22  Score=135.46  Aligned_cols=96  Identities=39%  Similarity=0.583  Sum_probs=82.5

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      ..|+|.. +...+.+.|++|||||+++.|+|     |+++.+..+.+.|+|.+|.|..+......+++|+|.|.+++.++
T Consensus        11 ~~G~L~k-~~~~~~k~W~kr~~vL~~~~L~~-----y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~   84 (107)
T d1upqa_          11 IRGWLHK-QDSSGLRLWKRRWFVLSGHCLFY-----YKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRT   84 (107)
T ss_dssp             EEEEEEE-ECSSSSCCEEEEEEEEETTEEEE-----ESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCC
T ss_pred             EEEEEEE-eCCCCCCCeeEEEEEEECCEEEE-----ecCcccccccceecccceEEEEeccCcccCcceEEEEEcCCCeE
Confidence            4566654 34455688999999999999999     99999999999999999998876544445778999999888889


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhH
Q psy407           83 YYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      |+|+|+|++|+.+||.+|++|+
T Consensus        85 ~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          85 YVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999996

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.2e-22  Score=140.97  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=74.2

Q ss_pred             ecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-----------
Q psy407           11 NDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-----------   79 (160)
Q Consensus        11 ~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-----------   79 (160)
                      +.++..+.||+|||||++++|+|     |+++.+.++.|.|+|.+|.|...+..   +++++|+|.++.           
T Consensus        15 kk~~~~k~WkkRwfvL~~~~L~y-----yk~~~~~~~~g~i~L~~~~v~~~~~~---~~~~~f~i~~~~~~~~~~~~~~~   86 (130)
T d1v88a_          15 KIRGTLKSWTKLWCVLKPGVLLI-----YKTQKNGQWVGTVLLNACEIIERPSK---KDGFCFKLFHPLEQSIWAVKGPK   86 (130)
T ss_dssp             EECCSSSSCEEEEEEEETTEEEE-----ESCSSSCCCCEEEECSSCEECCCCTT---TSSCEEEEECTTCCCCSCSSCTT
T ss_pred             EeCCCCCCceEEEEEEeCCEEEE-----EcCCCCCcceeEEECCCeEEEEcccc---CCCceEEEEcCCCcceecccCcc
Confidence            55667889999999999999999     99999999999999999998776543   568899986532           


Q ss_pred             ------------ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 ------------MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 ------------~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                                  .+.|+|+|+|++|+.+||++|+.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~  124 (130)
T d1v88a_          87 GEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             SCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhh
Confidence                        23478999999999999999999974

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-22  Score=134.49  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=76.1

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc-CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE-EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e-~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      +.|+|-.+.+    +.|++|||||+++.|+|     |+++.+ ..+.|.|+|.+|.|.....   .+++|+|.|.+++.+
T Consensus         3 ~s~yl~~~~~----~~WkkR~fvL~~~~L~y-----yk~~~~~~~~~~~i~l~~~~v~~~~~---~~~~~~f~~~~~~~~   70 (95)
T d2cofa1           3 TSSYLNVLVN----SQWKSRWCSVRDNHLHF-----YQDRNRSKVAQQPLSLVGCEVVPDPS---PDHLYSFRILHKGEE   70 (95)
T ss_dssp             TCCEEEEEET----TEEEEEEEEECSSCEEE-----ECSSTTCSEEEEEECTTTCEEECCCB---TTBSCEEEEEETTEE
T ss_pred             cccchhhhcC----CCceEEEEEEECCEEEE-----EecccccccccccccccceEEEeccc---ccceecceeccccce
Confidence            4566644432    57999999999999999     998755 5689999999999876544   267899999988889


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhH
Q psy407           82 TYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      +|+|+|+|++|+++||.+|+.|+
T Consensus        71 ~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          71 LAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHS
T ss_pred             eEEeeCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999984

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.8e-21  Score=133.98  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      .+.|+|...  ....+.|++|||||+++.|+|     |+++++..+.+.|+|.++.+..+.+.  .+++|+|.|.+++.+
T Consensus         9 ~~~G~L~k~--~~~~~~W~kr~~vL~~~~L~~-----~k~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~~F~i~~~~~~   79 (109)
T d1wgqa_           9 TMSGYLYRS--KGSKKPWKHLWFVIKNKVLYT-----YAASEDVAALESQPLLGFTVTLVKDE--NSESKVFQLLHKGMV   79 (109)
T ss_dssp             SCEEEEEEE--SSTTSCCEEEEEEEETTEEEE-----ESCTTCSSCSEEEECSSEEEEECCCS--SCSSSEEEEEETTEE
T ss_pred             cEEEEEEEE--CCCCCCceEEEEEEeCCEEEE-----eccccccccccccccceeeeeecccc--cccceeeeeecccce
Confidence            356777543  455578999999999999999     99999999999999999987776543  367899999988888


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           82 TYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .|+|+|++++++++||.+|+.|+...
T Consensus        80 ~~~f~a~s~~~~~~Wi~ai~~a~~~~  105 (109)
T d1wgqa_          80 FYVFKADDAHSTQRWIDAFQEGTVSG  105 (109)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999997433

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.7e-22  Score=143.32  Aligned_cols=99  Identities=9%  Similarity=0.022  Sum_probs=82.7

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCce
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR   81 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r   81 (160)
                      +|-|||.  +.+.+.+.|++|||||++++|+|     |+++.+..+.|.|+|.+|.+...... ..+.+++|.|.+++ +
T Consensus        12 ~~eG~L~--k~~~~~k~WkkrwfvL~~~~L~y-----Y~~~~d~~~~~~i~L~~~~~~~~~~~-~~~~~~~F~i~~~~-~   82 (136)
T d1x1fa1          12 YFEGFLL--IKRSGYREYEHYWTELRGTTLFF-----YTDKKSIIYVDKLDIVDLTCLTEQNS-TEKNCAKFTLVLPK-E   82 (136)
T ss_dssp             EEEEEEE--EECTTCCSCEEEEEEEETTEEEE-----ESCSSCSSCSEECCCSSCCEEEECCC-TTSCCCEEEEECSS-C
T ss_pred             cEEEEEE--EECCCCCCeEEEEEEEcCCEeEE-----Eeecccccccccccccceeeeeeecc-cccccceeeecCCC-c
Confidence            5789995  56677889999999999999999     99999999999999999864443221 23568999998765 7


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           82 TYYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        82 ~~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      +|+|+|+|++++++|+++|+.++....+
T Consensus        83 ~~~f~Aes~~e~~~Wi~~I~~v~~~~~p  110 (136)
T d1x1fa1          83 EVQLKTENTESGEEWRGFILTVTELSVP  110 (136)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHHSSCC
T ss_pred             eEEEEeCCHHHHHHHHHHHHHHHhccCC
Confidence            8999999999999999999999865544

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.5e-21  Score=132.87  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=77.6

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeC--CceE
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA--NMRT   82 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~--~~r~   82 (160)
                      |+|-...  ...+.|++|||||.++.|+|     |+++++..+.|.|+|.+|+|...+.. ..+++|+|.|..+  +.++
T Consensus         5 G~L~k~~--~~~k~W~kR~fvL~~~~L~y-----y~~~~~~~~~~~i~l~~~~v~~~~~~-~~~~~~~f~i~~~~~~~~~   76 (101)
T d2fjla1           5 GILYLED--PVNHEWYPHYFVLTSSKIYY-----SEETSSDLLRGVLDVPACQIAIRPEG-KNNRLFVFSISMPSVAQWS   76 (101)
T ss_dssp             EEEEEEE--TTTTEEEEEEEEEETTEEEE-----CCCCSCTCCCEEECSTTCEEEEETTC-SSSCSCEEEEECTTTSSCC
T ss_pred             EEEEEEc--CCCCCCeEEEEEEECCEEEE-----EeccccceecceEEcCCceeEeeeee-cccccceeEEeccccccEE
Confidence            4444433  34578999999999999999     99999999999999999998876543 2367899999875  3578


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhH
Q psy407           83 YYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      |+|+|+|++|+.+||.||+.|+
T Consensus        77 ~~~~a~s~~e~~~Wi~ai~~~~   98 (101)
T d2fjla1          77 LDVAADSQEELQDWVKKIREVA   98 (101)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999986

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.8e-21  Score=133.00  Aligned_cols=97  Identities=12%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             ccceEEEEecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecC-CCCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~-~~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|....++.  ..+.|++|||||+++.|+|     |+++.+..|.|.|+|.++.+.... .....+++|+|.|.+++
T Consensus        11 k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~-----y~~~~~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~   85 (111)
T d1u5fa1          11 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYY-----YGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD   85 (111)
T ss_dssp             EEEEEEEECCCSSCSSCSEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTT
T ss_pred             EEEEEEEECCCCCCCcCCceEEEEEEECCEEEe-----eccccccCcceEEEecccEEEeeccccccccccceEEEEccC
Confidence            357777666554  3568999999999999999     999999999999999998876543 22334678999999888


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           80 MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .++|+|+|+|++|+++||+||+.+.
T Consensus        86 ~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          86 KRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            8899999999999999999999874

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.2e-21  Score=130.93  Aligned_cols=98  Identities=12%  Similarity=0.241  Sum_probs=82.0

Q ss_pred             ccceEEEEecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeCC
Q psy407            3 HVCFLIILNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHAN   79 (160)
Q Consensus         3 ~~~~~~~~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~~   79 (160)
                      +.|+|.....+.  ..+.|++|||||+++.|+|     |+++.+..|.|.|+|.+|.+..+.. .+...++|+|.|.+.+
T Consensus         3 k~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y-----~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~   77 (106)
T d1u5da1           3 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYY-----YANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQD   77 (106)
T ss_dssp             EEEEEEEEEECSSSSCEEEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSS
T ss_pred             EEEEEEEECCCCCCCcCCcEEEEEEEECCEEEE-----EecccccccccccccCCceEeeccccccccCCceeEEEEcCC
Confidence            357776666544  3467999999999999999     9999999999999999998766532 2334678999999877


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           80 MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        80 ~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .++|+|+|+|++|+.+||.+|+.++.
T Consensus        78 ~~~~~f~a~s~~e~~~W~~ai~~~i~  103 (106)
T d1u5da1          78 RRTYEFTATSPAEARDWVDQISFLLK  103 (106)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999863

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-20  Score=130.19  Aligned_cols=98  Identities=16%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEE
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTY   83 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~   83 (160)
                      .|+|..  .....+.|++|||||.++.|+|     |+++++..|.|.|+|.+|.+...... ...++++|.|.+.+.++|
T Consensus         8 eG~L~k--~~~~~k~WkkryfvL~~~~L~~-----y~~~~~~~p~~~i~l~~~~~~~~~~~-~~~~~~~f~l~~~~~~~~   79 (113)
T d1plsa_           8 EGYLVK--KGSVFNTWKPMWVVLLEDGIEF-----YKKKSDNSPKGMIPLKGSTLTSPCQD-FGKRMFVFKITTTKQQDH   79 (113)
T ss_dssp             EEEEEE--ESSSSSCCEEEEEEEETTEEEE-----ESSTTCSSCSEEEESSSCCEESSCCS-SCCSSSEEEEEETTTEEE
T ss_pred             EEEEEE--eCCCCCCceEEEEEEECCEEEE-----EecCCccccceEEECccCeEEeeecc-cCCcceEEEEecCCCeEE
Confidence            366643  4456789999999999999999     99999999999999999876655432 236788999998888999


Q ss_pred             EEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           84 YFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        84 ~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      +|+|+|++|+.+||.+|+.|+.....
T Consensus        80 ~~~a~s~~e~~~Wi~ai~~ai~~~~~  105 (113)
T d1plsa_          80 FFQAAFLEERDAWVRDINKAIKCIEG  105 (113)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999866544

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.7e-20  Score=131.16  Aligned_cols=98  Identities=18%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC---
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN---   79 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~---   79 (160)
                      +.|+|.  +.....+.|++|||||+++.|+|     |+++++.++.+.|+|.+|.|..+........+|+|+|....   
T Consensus        10 k~G~L~--K~~~~~k~WkkR~fvL~~~~l~y-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~   82 (118)
T d1v89a_          10 KMGWLK--KQRSIVKNWQQRYFVLRAQQLYY-----YKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQ   82 (118)
T ss_dssp             EEEEEE--EECSSSSCEEEEEEEEETTEEEE-----ESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSS
T ss_pred             EEEEEE--EECCCCCCcEEEEEEEECCEEEE-----ecccCcccccceeccCceEEEEeccccccCCCcEEEEecCCCcc
Confidence            467776  34555688999999999999999     99999999999999999998876544445678999997643   


Q ss_pred             ----ceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           80 ----MRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        80 ----~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                          .++|+|+|++++|+.+||.||++|+...
T Consensus        83 ~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~  114 (118)
T d1v89a_          83 NRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG  114 (118)
T ss_dssp             CCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred             eecCCcEEEEEcCCHHHHHHHHHHHHHHHccC
Confidence                3679999999999999999999996443

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.7e-21  Score=133.33  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCC---CccCceeeEEEeeCCc
Q psy407            5 CFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSD---DKVFRKFSFKAEHANM   80 (160)
Q Consensus         5 ~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~---~~~~~~~~F~i~~~~~   80 (160)
                      |.|+  +..+..+.||||||||++++|+|     |+++.+.+|.|.|+|.++. |..+.+.   ....++|+|+|.+++ 
T Consensus         5 GwL~--k~~~~~~~wkkRwFvL~~~~L~Y-----Yk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~-   76 (112)
T d2coaa1           5 GWVV--HYSNKDTLRKRHYWRLDCKCITL-----FQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN-   76 (112)
T ss_dssp             EEEE--ECCSSSCCCEEEEEEECSSEEEE-----ESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS-
T ss_pred             EEEE--EECCCCCCeeEEEEEEEcceEEE-----EeccCCCccceEEeeeccccccccccccccccCCCccEEEEEeCC-
Confidence            4444  44556688999999999999999     9999999999999998864 4444331   112577999999875 


Q ss_pred             eEEEEEc-----------CCHHHHHHHHHHHHHhH
Q psy407           81 RTYYFAA-----------DTRESMIQWMNALSLAS  104 (160)
Q Consensus        81 r~~~l~A-----------ese~e~~~Wi~aL~~a~  104 (160)
                      |+|||.|           ++++++++||.||++|.
T Consensus        77 rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          77 ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             eEEEEecCCccccccccccChHHHHHHHHHHHHhh
Confidence            8999955           77889999999999985

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=6.2e-21  Score=135.39  Aligned_cols=95  Identities=21%  Similarity=0.403  Sum_probs=70.8

Q ss_pred             cceEEEEecCCCCCCceEEEEEEe--CCeEEEcccCCCCCCccCccce-----EEEcCCeE-EEecCCCCccCceeeEEE
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLA--THVMVFSPEISGLGFEEEKLLG-----SILLPSYK-ISPCSSDDKVFRKFSFKA   75 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~--~~~L~y~~~~yYk~~~e~~~~g-----~I~L~~~~-V~~~~~~~~~~~~~~F~i   75 (160)
                      .|+++..+.+.+.+.|+||||||.  ++.|+|     |+++.+..+.|     .|.|..+. +..+......+..++|.+
T Consensus        17 ~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~y-----y~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (126)
T d1v5pa_          17 ICGFLDIEDNENSGKFLRRYFILDTQANCLLW-----YMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVI   91 (126)
T ss_dssp             EECCEEEECTTCSSCEEEEEEEEETTTTEEEE-----ESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEE
T ss_pred             eeeeEEEECCCCCCCeeEEEEEEEcCCCeEEE-----eeccccccccceeecccceeeeeeccccccccccccccceEEE
Confidence            455556777788899999999995  678999     88877655555     55555543 222322222355688988


Q ss_pred             eeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           76 EHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        76 ~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .++ .+.|+|+|+|++|+.+||+||+.|+
T Consensus        92 ~~~-~r~~~l~Aes~~e~~~Wi~aL~~A~  119 (126)
T d1v5pa_          92 NAL-SQRYFLQANDQKDLKDWVEALNQAS  119 (126)
T ss_dssp             ECS-SCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             cCC-CeeEEEECCCHHHHHHHHHHHHHHh
Confidence            765 5899999999999999999999996

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=134.84  Aligned_cols=86  Identities=19%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             cCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc----CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEc
Q psy407           12 DNMASTLCHNVYLLLATHVMVFSPEISGLGFEE----EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAA   87 (160)
Q Consensus        12 ~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e----~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~A   87 (160)
                      ...+.+.|++|||||+++.|+|     |+++.+    ..+.+.|+|.+|.|....+.  .+++|+|.|.+++ ++|+|+|
T Consensus        20 ~~~~~k~Wkkr~fvL~~~~L~~-----y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~--~~r~~~F~i~~~~-~~~~f~A   91 (133)
T d2j59m1          20 VGGSIRPWKQMYVVLRGHSLYL-----YKDKREQTTPSEEEQPISVNACLIDISYSE--TKRKNVFRLTTSD-CECLFQA   91 (133)
T ss_dssp             ------CCEEEEEEEETTEEEE-----ESCTTCC--------CEECSSCEEEECSSS--CSCSSEEEEECSS-CEEEEEC
T ss_pred             cCCCCCCceEEEEEEeCCEEEE-----EeccccccccccccccceecceEEEEcccc--cccCceeEEecCC-CEEEEEe
Confidence            3455678999999999999999     988655    35789999999999876543  3789999999875 6899999


Q ss_pred             CCHHHHHHHHHHHHHhHh
Q psy407           88 DTRESMIQWMNALSLASI  105 (160)
Q Consensus        88 ese~e~~~Wi~aL~~a~~  105 (160)
                      +|++|+.+||.+|+.|+.
T Consensus        92 ~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          92 EDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             SSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999998863

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.6e-20  Score=142.76  Aligned_cols=97  Identities=12%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             cceEEEEecCC--CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeCCc
Q psy407            4 VCFLIILNDNM--ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANM   80 (160)
Q Consensus         4 ~~~~~~~~~~~--~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~~~   80 (160)
                      .|+|.....+.  ..+.|++|||||+++.|+|     |+++++..+.|.|+|.+|.+..+.. ....+++|+|.|.+++.
T Consensus       107 ~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~y-----y~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~  181 (209)
T d1u5ea1         107 AGYLEKRRKDHSFLGFEWQKRWCALSKTVFYY-----YGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  181 (209)
T ss_dssp             EEEEEEEEHHHHTTTCCCEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             EEEEEEecCCCCCccccceEEEEEEECCEEEE-----EecCCCCccceEEEecceeeeeccccccccCCCcEEEEEcCCC
Confidence            47776665443  3578999999999999999     9999999999999999998876543 22236789999998888


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           81 RTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      |+|+|+|+|++++.+||.+|+.++.
T Consensus       182 r~~~f~a~s~~e~~~Wi~al~~~i~  206 (209)
T d1u5ea1         182 RIYQFTAASPKDAEEWVQQLKFILQ  206 (209)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999863

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=6.6e-20  Score=129.20  Aligned_cols=96  Identities=16%  Similarity=0.200  Sum_probs=78.2

Q ss_pred             CccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEe-----
Q psy407            2 DHVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE-----   76 (160)
Q Consensus         2 ~~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~-----   76 (160)
                      ++.|+|...  ....+.|++|||||+++.|+|     |+++.+..+.|.|+|.+|.|..+...   +++++|.+.     
T Consensus         6 ~keG~L~K~--~~~~k~WkrR~fvL~~~~L~y-----y~~~~~~~~~g~i~L~~~~v~~~~~~---~~~~~~~~~~~~~~   75 (127)
T d1fgya_           6 DREGWLLKL--GGRVKTWKRRWFILTDNCLYY-----FEYTTDKEPRGIIPLENLSIREVLDP---RKPNCFELYNPSHK   75 (127)
T ss_dssp             SEEEEEEEE--CSSSCCEEEEEEEEETTEEEE-----ESSTTCSSCSEEEECTTCEEEEECCS---SCSSEEEEECSSST
T ss_pred             ceEEEEEEE--CCCCCCcEEEEEEEECCEEEE-----EccCCCccccceEeCCCeEEEEccCC---CCCceEEEeccccc
Confidence            467888654  455788999999999999999     99999999999999999988776543   445666553     


Q ss_pred             ----------------eCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           77 ----------------HANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        77 ----------------~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                                      ....++|+|+|+|++|+.+||.||+.|+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~  122 (127)
T d1fgya_          76 GQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  122 (127)
T ss_dssp             TCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHccC
Confidence                            2235789999999999999999999997543

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6e-20  Score=126.38  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             cceEEEEecC-CCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407            4 VCFLIILNDN-MASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         4 ~~~~~~~~~~-~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      .|+|.  +.. .+.+.|++|||||+++.|+|     |+++++..|.|.|+|.++.+...      .+.++|.|.+++ ++
T Consensus         4 ~G~L~--K~~~~~~~~W~kr~fvL~~~~L~~-----~~~~~~~~~~~~i~L~~~~~~~~------~~~~~f~i~~~~-~~   69 (102)
T d2coda1           4 SGWLD--KLSPQGKRMFQKRWVKFDGLSISY-----YNNEKEMYSKGIIPLSAISTVRV------QGDNKFEVVTTQ-RT   69 (102)
T ss_dssp             EEEEE--ECCSSSSSCCEEEEEEECSSEEEE-----EESSCCSSCCCEEETTTEEEEEE------ETTTEEEEEESS-CC
T ss_pred             EEEEE--EECCCCCCCceEEEEEEECCEEEE-----EeccCcceeEEEEEchhceeecc------ccceeEEEEcCC-cE
Confidence            35664  333 34578999999999999999     99999999999999999876544      346799999875 78


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhhccC
Q psy407           83 YYFAADTRESMIQWMNALSLASILQNS  109 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~~~~  109 (160)
                      |+|+|+|++|+.+||++|+.|+..+..
T Consensus        70 ~~l~a~s~~e~~~Wi~ai~~~i~~~~~   96 (102)
T d2coda1          70 FVFRVEKEEERNDWISILLNALKSQSL   96 (102)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHST
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999999999999766543

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-19  Score=123.79  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=74.9

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCC--eEEEcccCCCCCCccCccceEEEcCCeEEEecCCC---CccCceeeEEEee
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATH--VMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSD---DKVFRKFSFKAEH   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~--~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~---~~~~~~~~F~i~~   77 (160)
                      +.|+|...  ....+.|++|||||.++  .|+|     |+++.+..+.|.|++.+|.+..+...   ......++|.|.+
T Consensus         4 k~G~L~k~--~~~~k~WkkR~fvL~~~~~~l~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (104)
T d2i5fa1           4 KQGCLLKQ--GHRRKNWKVRKFILREDPAYLHY-----YDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIIT   76 (104)
T ss_dssp             EEEEEEEE--CTTTCCEEEEEEEEETTTTEEEE-----ECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEEC
T ss_pred             EEEEEEEE--CCCCCCcEEEEEEEECCeeEEEE-----EcCccccCccceEeecceEEEEeccCcccccccCccEEEEEC
Confidence            35666543  34567899999999976  4555     78888889999999999987765431   2235678999998


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ++.+.|+|+|+|++|+.+||+||+.|+
T Consensus        77 ~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          77 ADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             TTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            888999999999999999999999986

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.2e-20  Score=135.77  Aligned_cols=97  Identities=22%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             ccceEEEEecCC----CCCCceEEEEEEeCC-----eEEEcccCCCCCCc-cCccceEEEcCCeEEEecCCCCccCceee
Q psy407            3 HVCFLIILNDNM----ASTLCHNVYLLLATH-----VMVFSPEISGLGFE-EEKLLGSILLPSYKISPCSSDDKVFRKFS   72 (160)
Q Consensus         3 ~~~~~~~~~~~~----~~k~WkkRWFVL~~~-----~L~y~~~~yYk~~~-e~~~~g~I~L~~~~V~~~~~~~~~~~~~~   72 (160)
                      +.|+|..-..+.    ..+.|++|||||++.     .|.|     |+++. +..+.|.|+|.+|.+......   .++|+
T Consensus        20 k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~y-----y~~~~~~~~~~g~i~l~~~~~~~~~~~---~~~~~   91 (150)
T d1wg7a_          20 KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNF-----YKDEKISKEPKGSIFLDSCMGVVQNNK---VRRFA   91 (150)
T ss_dssp             CEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEE-----ESSSCCSSCCSEEECTTTCCEECCCCS---SCTTE
T ss_pred             EEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEE-----EeccccccccccccccccccccccCcc---ccceE
Confidence            456665432221    236799999999854     4666     66554 578999999999987665442   67899


Q ss_pred             EEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           73 FKAEHANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        73 F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      |.|.+++.++|+|+|+|++|+++||.+|+.|+...
T Consensus        92 F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~  126 (150)
T d1wg7a_          92 FELKMQDKSSYLLAADSEVEMEEWITILNKILQLN  126 (150)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            99998877899999999999999999999987543

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.8e-21  Score=131.00  Aligned_cols=93  Identities=9%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             ccceEEEEecCC-CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCC-c
Q psy407            3 HVCFLIILNDNM-ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-M   80 (160)
Q Consensus         3 ~~~~~~~~~~~~-~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-~   80 (160)
                      ..|+|.+-..++ ..+.|+||||||+++.|+|     |++. +..+.+.|+|.+|.|..+...   .++|+|.|.+++ .
T Consensus         7 k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y-----~~~~-~~~~~~~i~l~~~~v~~~~~~---~~~~~f~i~~~~~~   77 (101)
T d2elba2           7 KAGYLNARNKTGLVSSTWDRQFYFTQGGNLMS-----QARG-DVAGGLAMDIDNCSVMAVDCE---DRRYCFQITSFDGK   77 (101)
T ss_dssp             CEEEEEECSCCC----CCCEEEEEEETTEEEE-----ECTT-CCCE----EEEECCCCCCCCC---CSSSSSEECCCSSS
T ss_pred             EeEEEEEeccCCCCccccEEEEEEEeCCEEEE-----EccC-CcccceEEEeccccccccccc---CCcceEEEEeeccc
Confidence            456666554433 2567999999999999998     8865 456899999999998776553   678999998654 4


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           81 RTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        81 r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ++|+|+|+|++|+.+||.||+.++
T Consensus        78 ~~~~l~A~s~~e~~~Wi~al~~vs  101 (101)
T d2elba2          78 KSSILQAESKKDHEEWICTINNIS  101 (101)
T ss_dssp             CCCCEECSSHHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhcC
Confidence            789999999999999999999863

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=127.73  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCe--EEEcccCCCCC--CccCccceEEEcCCeEEEecCCCC-ccCceeeEEEee
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHV--MVFSPEISGLG--FEEEKLLGSILLPSYKISPCSSDD-KVFRKFSFKAEH   77 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~--L~y~~~~yYk~--~~e~~~~g~I~L~~~~V~~~~~~~-~~~~~~~F~i~~   77 (160)
                      |.|+|... .+...+.||||||||+++.  +||     |++  +.+..++|.|.|.++.+....... ...+.+.|.|.+
T Consensus        10 ~~G~L~K~-g~~~~k~WkkRwfvL~~~~~~~yy-----~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~   83 (126)
T d1wi1a_          10 HSGYLWAI-GKNVWKRWKKRFFVLVQVSQYTFA-----MCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVK   83 (126)
T ss_dssp             EEEEEEEE-CSSSCCSCEEEEEEEEEEETTEEE-----EEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEEC
T ss_pred             EEEEEEEE-CCCCCCCceEEEEEEeCCceEEEE-----EcccccccccceeeeeeceeeeeeccccccccccceeEEecc
Confidence            55666544 4455689999999998653  444     433  334678999999999876654322 224455666665


Q ss_pred             CCceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           78 ANMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        78 ~~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                       ..++|+|+|+|++|+.+||.+|..|+.
T Consensus        84 -~~r~~~f~A~s~~e~~~Wv~al~~a~~  110 (126)
T d1wi1a_          84 -EGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             -SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             -CCeEEEEEECCHHHHHHHHHHHHHHHH
Confidence             468999999999999999999999873

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=123.90  Aligned_cols=96  Identities=23%  Similarity=0.327  Sum_probs=77.5

Q ss_pred             cceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEE-ecCCCCccCceeeEEEeeCCceE
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKIS-PCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~-~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      .|+|.  +.....+.|++|||||.+..|+|     |+++.+..+.|.|+|.+|.+. .+...+.....++|.|.+++ ++
T Consensus         6 ~G~L~--K~~~~~~~Wkkr~fvL~~~~l~y-----y~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~-~~   77 (103)
T d1eaza_           6 AGYCV--KQGAVMKNWKRRYFQLDENTIGY-----FKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RT   77 (103)
T ss_dssp             EEEEE--EECTTTCCEEEEEEEECSSEEEE-----ESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS-CE
T ss_pred             EEEEE--EECCCCCCeeEEEEEEECCEEEE-----EecccCcccceEEEccceEEeeccccccccccceEEEEEeCC-EE
Confidence            35654  34456778999999999999999     999998899999999987643 33332233567899999764 79


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           83 YYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      |+|+|+|++|+.+||.+|+.|+..+
T Consensus        78 ~~~~a~s~~e~~~W~~aI~~ai~~~  102 (103)
T d1eaza_          78 FYVQADSPEEMHSWIKAVSGAIVAQ  102 (103)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999997543

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.8e-20  Score=133.10  Aligned_cols=91  Identities=12%  Similarity=0.028  Sum_probs=74.2

Q ss_pred             EecCCCCCCceEEEEEEeCC------eEEEcccCCCCCCccCccceEEEcCCeEE-EecCCCCccCceeeEEEeeCCceE
Q psy407           10 LNDNMASTLCHNVYLLLATH------VMVFSPEISGLGFEEEKLLGSILLPSYKI-SPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus        10 ~~~~~~~k~WkkRWFVL~~~------~L~y~~~~yYk~~~e~~~~g~I~L~~~~V-~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      .+.+.+.+.|+||||||+++      .|+|     |+++++.++.|.|.|.++.. ..+...+..+++|+|.|.+++.+.
T Consensus        33 ~~~~~~~~~WkkrwfvL~~~~~~~~~~L~y-----y~~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~~~~F~l~t~~~~~  107 (136)
T d1v5ma_          33 ASGPGGTAQWQKCRLLLRRAVAGERFRLEF-----FVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAE  107 (136)
T ss_dssp             CSSSCCSCCCEEEEEEEEECSSSCCEEEEE-----ESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCB
T ss_pred             cCCCCCCCCceEEEEEEeCCcccchhhhhh-----hCcccccCcCcceecccceeeeeeccccCCCCCcEEEEEcCCCcE
Confidence            34566778899999999975      4777     99999999999999988653 223222334688999999887778


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHh
Q psy407           83 YYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      |+|+|+|++|+.+||++|+.|+.
T Consensus       108 y~f~A~s~~e~~~Wv~ai~~ai~  130 (136)
T d1v5ma_         108 YILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999864

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.80  E-value=1.3e-19  Score=124.54  Aligned_cols=84  Identities=24%  Similarity=0.254  Sum_probs=72.1

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCcc------CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEE
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEE------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      +.+.+.|++|||||+++.|+|     |+++.+      ..+.+.|+|.+|.+......  .+++|+|.|.+++.++|+|+
T Consensus        17 k~~~~~Wk~r~~vL~~~~L~~-----yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~   89 (106)
T d1btna_          17 KASSRSWHNVYCVINNQEMGF-----YKDAKSAASGIPYHSEVPVSLKEAICEVALDY--KKKKHVFKLRLSDGNEYLFQ   89 (106)
T ss_dssp             BCSCCCCEEEEEEEETTEEEE-----ESSHHHHHHTCCSSSCCCEECTTCEEEECSSC--CSSSSEEEEECTTSCEEEEE
T ss_pred             ccCCCCCcEEEEEEECCEEEE-----EeChhhcccccccCcceeEEeccceeeecccc--ccCcceEeecccCCCEEEEE
Confidence            556678999999999999999     999765      34678899999988776442  36789999999888899999


Q ss_pred             cCCHHHHHHHHHHHHHh
Q psy407           87 ADTRESMIQWMNALSLA  103 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a  103 (160)
                      |+|++|+.+||.+|+.|
T Consensus        90 a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          90 AKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CSSHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhC
Confidence            99999999999999986

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5.6e-19  Score=122.87  Aligned_cols=93  Identities=17%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             cceEEEEecCCCCCCceEEEEEEe--CCeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-C----CccCceeeEEEe
Q psy407            4 VCFLIILNDNMASTLCHNVYLLLA--THVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-D----DKVFRKFSFKAE   76 (160)
Q Consensus         4 ~~~~~~~~~~~~~k~WkkRWFVL~--~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~----~~~~~~~~F~i~   76 (160)
                      .|+|.  +.....+.||+|||||+  +.+|+|     |+++.+.+|+|.|+|.+|.+..+.. .    ......+.|.+.
T Consensus        11 eG~L~--k~~~~~k~WkkR~fvL~~~~~~L~~-----~~~~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~   83 (117)
T d1v5ua_          11 EGILY--KKGAFMKPWKARWFVLDKTKHQLRY-----YDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVK   83 (117)
T ss_dssp             EEEEE--ECCCSSSCCEEEEEEEETTTTEEEE-----ESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEE
T ss_pred             EEEEE--EECCCCCCceEEEEEEeCCCCEEEe-----cccccccCcceEEEecceEEEeecccccccccccccceEEEee
Confidence            46664  44556778999999997  468998     9999999999999999987544321 1    112345678887


Q ss_pred             eCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           77 HANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        77 ~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      ++ .++|+|+|+|++|+++||.+|+.|+
T Consensus        84 ~~-~~~~~~~a~s~~e~~~Wv~~l~~ai  110 (117)
T d1v5ua_          84 TT-RRVYNFCAQDVPSAQQWVDRIQSCL  110 (117)
T ss_dssp             ES-SCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             CC-CcEEEEEeCCHHHHHHHHHHHHHHH
Confidence            65 5899999999999999999999885

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7e-19  Score=131.75  Aligned_cols=87  Identities=15%  Similarity=0.123  Sum_probs=68.9

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCcc----CccceEEEcCCeEEE-ecCCCC-----------------------c
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEE----EKLLGSILLPSYKIS-PCSSDD-----------------------K   66 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e----~~~~g~I~L~~~~V~-~~~~~~-----------------------~   66 (160)
                      ..+.||+|||||+++.|+|     |+++.+    ..+.|.|+|.++.+. .+..+.                       .
T Consensus        20 ~~~~WkrRwFVL~~~~L~Y-----yk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (169)
T d1btka_          20 SPLNFKKCLFLLTVHKLSY-----YEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISII   94 (169)
T ss_dssp             CCCCEEEEEEEECSSEEEE-----EEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHH
T ss_pred             CcCCceEEEEEEECCEEee-----eccccccccccCccceEeccceEEEEeecccCCCCccccccccccccccccccccc
Confidence            3446999999999999999     987654    458999999997643 332211                       0


Q ss_pred             cCceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           67 VFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        67 ~~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      ....++|+|.+++ |+|||+|+|++|+++||.+|+.|+...
T Consensus        95 ~~~~~~F~I~t~~-rt~~l~A~s~eE~~~WI~aL~~~i~~~  134 (169)
T d1btka_          95 ERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIRYN  134 (169)
T ss_dssp             HCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred             cccCcceEEEeCC-cEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            1356899999865 899999999999999999999998543

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.77  E-value=1.6e-18  Score=121.85  Aligned_cols=88  Identities=20%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             CCCCCCceEEEEEEeCCeEEEcccCCCCCCccCc------cceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEE
Q psy407           13 NMASTLCHNVYLLLATHVMVFSPEISGLGFEEEK------LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFA   86 (160)
Q Consensus        13 ~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~------~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~   86 (160)
                      +.+.+.|++|||||+++.|+|     |+++.+..      +.+.|.|..|.+......  ..++|+|.|.+.+.++|+|+
T Consensus        26 r~~~k~Wkkrw~vL~~~~L~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~i~~~~~~~~~l~   98 (123)
T d1wjma_          26 KAANRSWQNVYCVLRRGSLGF-----YKDAKAASAGVPYHGEVPVSLARAQGSVAFDY--RKRKHVFKLGLQDGKEYLFQ   98 (123)
T ss_dssp             ECSCCCCEEEEEEEETTEEEE-----ESSHHHHTTTCBSSSCCCEECTTCEEEECTTC--SSCSSEEEEECSSSCEEEEE
T ss_pred             ccCCCCCcEEEEEEECCEEEE-----EecchhccccccccccccccccceeEEecccc--cccCcEEEEEcCCCcEEEEE
Confidence            345678999999999999999     98865533      445667777877665443  36789999998888899999


Q ss_pred             cCCHHHHHHHHHHHHHhHhhc
Q psy407           87 ADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      |+|++|+++||++|+.|+...
T Consensus        99 a~s~~e~~~Wi~aI~~a~~~~  119 (123)
T d1wjma_          99 AKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999987543

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.3e-19  Score=122.93  Aligned_cols=95  Identities=15%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCe--EEEcccCCCC-CCccCccceEEEcCCeEEEecCCCC------ccCceeeE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHV--MVFSPEISGL-GFEEEKLLGSILLPSYKISPCSSDD------KVFRKFSF   73 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~--L~y~~~~yYk-~~~e~~~~g~I~L~~~~V~~~~~~~------~~~~~~~F   73 (160)
                      +.|+|..  .....+.|+||||||++..  ++|     |. +.....|.|.|+|.+|.|..+....      ...+.++|
T Consensus        13 k~G~L~K--~~~~~k~WkkR~fvL~~~~~~~~~-----~~~~~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f   85 (116)
T d1x1ga1          13 KQGYLAK--QGHKRKNWKVRRFVLRKDPAFLHY-----YDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLF   85 (116)
T ss_dssp             EEEEEEE--ECSSSSSEEEEEEEEEESSCEEEE-----ECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCE
T ss_pred             EEEEEEE--EcCCCCCCceEEEEEECCCcEEEE-----eccccccccceeEEEcCCCEEEEecccCccccccccccccee
Confidence            3566654  3455678999999998754  443     43 4445789999999999876654211      12456789


Q ss_pred             EEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           74 KAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        74 ~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .|.+++.+.|+|+|+|++|+++||+||++++
T Consensus        86 ~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~t  116 (116)
T d1x1ga1          86 KVITKDDTHYYIQASSKAERAEWIEAIKKLT  116 (116)
T ss_dssp             EECCTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             EEEeCCCeEEEEECCCHHHHHHHHHHHHhhC
Confidence            9998888899999999999999999999873

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=118.61  Aligned_cols=79  Identities=18%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             CCceEEEEEEeCC-------eEEEcccCCCCCCcc-----CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEE
Q psy407           17 TLCHNVYLLLATH-------VMVFSPEISGLGFEE-----EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY   84 (160)
Q Consensus        17 k~WkkRWFVL~~~-------~L~y~~~~yYk~~~e-----~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~   84 (160)
                      +.|+||||||++.       .|+|     |+++.+     ..|.|.|+|.+|.+......  ..++|+|.|.+++ ++|+
T Consensus        12 k~WkkR~fvL~~~~~~~~~~~L~y-----y~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~~f~i~t~~-r~~~   83 (103)
T d1qqga1          12 KSMHKRFFVLRAASEAGGPARLEY-----YENEKKWRHKSSAPKRSIPLESCFNINKRAD--SKNKHLVALYTRD-EHFA   83 (103)
T ss_dssp             TTCCEEEEEEECCBTTTBSSEEEE-----ESSHHHHHTTCSCCSEEEEGGGEEEEEEECC--SSCSSEEEEEESS-CEEE
T ss_pred             CCCCEEEEEEecccccCCccEEEE-----EcchhhhhcccccccceEecceeeEEeeccc--CCCceEEEEEeCC-eEEE
Confidence            6799999999975       4787     998643     56899999999864433221  3678999999864 8999


Q ss_pred             EEcCCHHHHHHHHHHHHHh
Q psy407           85 FAADTRESMIQWMNALSLA  103 (160)
Q Consensus        85 l~Aese~e~~~Wi~aL~~a  103 (160)
                      |+|+|++|+.+||.||+..
T Consensus        84 l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          84 IAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             EECSSHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHhh
Confidence            9999999999999999863

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=9.2e-18  Score=118.20  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             CCCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeE-EEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHH
Q psy407           15 ASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM   93 (160)
Q Consensus        15 ~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~   93 (160)
                      +.+.|++|||||++++|+|     |+++.+  +.+.|.|.++. |.....    .++++|.|.+++.++|+|+|+|++|+
T Consensus        23 ~~~~WkkR~fvL~~~~L~y-----y~~~~~--~~~~i~l~~~~~v~~~~~----~~~~~f~i~~~~~~~~~f~a~s~~e~   91 (119)
T d1omwa2          23 FLTQWQRRYFYLFPNRLEW-----RGEGEA--PQSLLTMEEIQSVEETQI----KERKCLLLKIRGGKQFVLQCDSDPEL   91 (119)
T ss_dssp             ----CEEEEEEEETTEEEE-----ECTTSC--CCEEEEGGGEEEEEEEES----SSCEEEEEEETTSCEEEEECSSHHHH
T ss_pred             CCCCeEEEEEEEEcCeEEE-----Eecccc--cCccceeccccccccccc----cccceEEEEcCCCcEEEEECCCHHHH
Confidence            3456999999999999999     987654  56889998754 444332    56778999888778999999999999


Q ss_pred             HHHHHHHHHhHhhc
Q psy407           94 IQWMNALSLASILQ  107 (160)
Q Consensus        94 ~~Wi~aL~~a~~~~  107 (160)
                      .+||++|+.|....
T Consensus        92 ~~W~~al~~a~~~~  105 (119)
T d1omwa2          92 VQWKKELRDAYREA  105 (119)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987543

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=3.3e-18  Score=120.39  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=73.7

Q ss_pred             CccceEEEEe------cCCCCCCceEEEEEEeCCeEEEcccCCCCCCccCccce--------EEEcCCeEEEecCCCCcc
Q psy407            2 DHVCFLIILN------DNMASTLCHNVYLLLATHVMVFSPEISGLGFEEEKLLG--------SILLPSYKISPCSSDDKV   67 (160)
Q Consensus         2 ~~~~~~~~~~------~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g--------~I~L~~~~V~~~~~~~~~   67 (160)
                      .|-|||..=.      ++...+.|+||||||+++.|+|     |+++.+..+.+        .|.+.++.+.....  ..
T Consensus         9 ~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~y-----y~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~   81 (122)
T d1droa_           9 GHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISF-----YKDQKGYKSNPELTFRGEPSYDLQNAAIEIASD--YT   81 (122)
T ss_dssp             SEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBE-----ESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCS--SS
T ss_pred             ceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEE-----EcCcccccccCcccccccceEeccceEEEeccc--cc
Confidence            4667776322      2445667999999999999999     99887755444        45555555544332  23


Q ss_pred             CceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           68 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        68 ~~~~~F~i~~~~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                      .++++|.|.+++.++|+|+|+|++|+++||.+|+.++
T Consensus        82 ~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~  118 (122)
T d1droa_          82 KKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS  118 (122)
T ss_dssp             SSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             cccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            6788999999887899999999999999999999986

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.6e-18  Score=125.89  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   95 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e~~~   95 (160)
                      .+.||||||||++++|.|     |+++.+..+.|.|+|..|.....      +.+++|.|.+++ |+|+|+|++ .|+.+
T Consensus        59 ~~~wkkR~FvL~~~~L~Y-----Ykd~~~~~~kG~I~L~~~~~v~~------~~~~~F~I~t~~-Rty~l~a~~-~d~~~  125 (147)
T d1w1ha_          59 GLFARRRQLLLTEGPHLY-----YVDPVNKVLKGEIPWSQELRPEA------KNFKTFFVHTPN-RTYYLMDPS-GNAHK  125 (147)
T ss_dssp             TTSCEEEEEEEETTTEEE-----EEETTTTEEEEEECCCTTCEEEE------EETTEEEEECSS-CEEEEECTT-SCHHH
T ss_pred             CCcceEEEEEEcCCeeEE-----EeCCCcccccceEEecccccccc------ccCceEEEecCc-eEEEEEcCh-HHHHH
Confidence            457999999999999999     99999999999999988653322      345699999875 899999865 68999


Q ss_pred             HHHHHHHhHhhc
Q psy407           96 WMNALSLASILQ  107 (160)
Q Consensus        96 Wi~aL~~a~~~~  107 (160)
                      ||.||+.+....
T Consensus       126 Wv~aI~~v~~~~  137 (147)
T d1w1ha_         126 WCRKIQEVWRQR  137 (147)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999986544

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.2e-18  Score=119.79  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeC-CeEEEcccCCCCCCccCccceEEEcCCeEEEecCC-CCccCceeeEEEeeC--
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLAT-HVMVFSPEISGLGFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHA--   78 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~-~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~~~~-~~~~~~~~~F~i~~~--   78 (160)
                      +.|+|..  .....+.||+|||||++ +.|+|     |+++.+..+.|.|+|..|.+..+.. .+..+++++|.|...  
T Consensus         9 k~G~L~K--~~~~~k~Wk~RwfvL~~~~~l~~-----~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~   81 (118)
T d1unqa_           9 KEGWLHK--RGEYIKTWRPRYFLLKNDGTFIG-----YKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQW   81 (118)
T ss_dssp             EEEEEEE--ECSSSCCEEEEEEEEETTSEEEE-----ESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEET
T ss_pred             EEEEEEE--ECCCCCCcEEEEEEEeccceeEE-----EeeccCccccccccccceEEeecccccccccCCceEEEEeccc
Confidence            4577764  45557789999999985 57887     8888888888888887665432211 111256788998753  


Q ss_pred             -CceEEEEEcCCHHHHHHHHHHHHHhHhh
Q psy407           79 -NMRTYYFAADTRESMIQWMNALSLASIL  106 (160)
Q Consensus        79 -~~r~~~l~Aese~e~~~Wi~aL~~a~~~  106 (160)
                       ..+.|+|+|+|++|+.+||+||+.|+..
T Consensus        82 ~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~  110 (118)
T d1unqa_          82 TTVIERTFHVETPEEREEWTTAIQTVADG  110 (118)
T ss_dssp             TEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence             2357999999999999999999998743

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.9e-12  Score=90.60  Aligned_cols=82  Identities=12%  Similarity=0.169  Sum_probs=68.0

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCcc---CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcCCHHH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   92 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e---~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Aese~e   92 (160)
                      .+.|+.|||+|-+..|.|     +|....   -...+.|+|.++.|..+...  ...+|+|.|..+..++|+|.|.|++|
T Consensus        41 ~~~~k~R~~fLF~~~Ll~-----~k~~~~~~~~~~k~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~~~~~~l~a~s~ee  113 (132)
T d1v61a_          41 CEEKEERYFLLFSSVLIM-----LSASPRMSGFMYQGKIPIAGMVVNRLDEI--EGSDCMFEITGSTVERIVVHCNNNQD  113 (132)
T ss_dssp             SSCCCEEEEEECSSCEEE-----EECSSSSSCCEEEEEECTTTCBCSTTCSS--SSSCCCEEEECSSSCEEEECCCCSHH
T ss_pred             CCCcceEEEEEeCCEEEE-----EEEcCCCceeEEeeecchhhccccccccc--cCccceEEEeCCCCCEEEEEcCCHHH
Confidence            468999999999999998     774332   34679999999998766443  25678999987766789999999999


Q ss_pred             HHHHHHHHHHhH
Q psy407           93 MIQWMNALSLAS  104 (160)
Q Consensus        93 ~~~Wi~aL~~a~  104 (160)
                      +.+||++|+++.
T Consensus       114 k~~Wv~~L~~~i  125 (132)
T d1v61a_         114 FQEWMEQLNRLT  125 (132)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999985

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2.3e-09  Score=73.47  Aligned_cols=94  Identities=12%  Similarity=0.038  Sum_probs=71.8

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCC--Cc--cCccceEEEcCCeEEEecCCCCccCceeeEEEeeC
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLG--FE--EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA   78 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~--~~--e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~   78 (160)
                      |-|.|+.+..+.. +.-++|++.|-+..|.+     .+.  ..  .-...+.|+|.++.|..+.+.+  ..+++|+|.++
T Consensus         6 ~eG~l~~~~~~~~-k~~~~~~~fLF~d~Ll~-----~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~--~~~n~f~i~~~   77 (109)
T d1zc3b1           6 YNGDLVEYEADHM-AQLQRVHGFLMNDCLLV-----ATWLPQRRGMYRYNALYPLDRLAVVNVKDNP--PMKDMFKLLMF   77 (109)
T ss_dssp             EEEEEEEEETTTC-CEEEEEEEEEESSEEEE-----EEEECCTTSCEEEEEEEETTTCEEEEECCBT--TBSSEEEEEET
T ss_pred             EeeeEEEEccCCC-CcceeEEEEEecCEEEE-----EEEcCCcceEEEeeeEEeccceEEEEeeccc--ccceEEEEccC
Confidence            4577777665543 56778898888887776     432  11  1356789999999998775533  45789999987


Q ss_pred             CceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           79 NMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        79 ~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      . ++|.|+|+|++|..+||.+|+.|..
T Consensus        78 ~-~~~~~~a~s~~eK~~W~~~l~~a~~  103 (109)
T d1zc3b1          78 P-ESRIFQAENAKIKREWLEVLEETKR  103 (109)
T ss_dssp             T-EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             C-CEEEEEECCHHHHHHHHHHHHHHHH
Confidence            5 6899999999999999999999864

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.5e-09  Score=79.53  Aligned_cols=96  Identities=18%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc----CccceEEEcCCeEEEecCCCCc----cCceeeEE
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE----EKLLGSILLPSYKISPCSSDDK----VFRKFSFK   74 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e----~~~~g~I~L~~~~V~~~~~~~~----~~~~~~F~   74 (160)
                      |.|.|+.+..+.  +.|+.|||+|-+..|.|     ++....    -...+.|+|..+.|..+...+.    ..-+++|.
T Consensus        29 ~eG~L~~~~~~~--~k~~~r~~fLF~d~Ll~-----~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~  101 (162)
T d2dfka2          29 YTGEMAWIYQPY--GRNQQRVFFLFDHQMVL-----CKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFK  101 (162)
T ss_dssp             EEEEEEEESSTT--CCCEEEEEEEETTEEEE-----EEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEE
T ss_pred             EEEEEEEEEcCC--CCceeEEEEEeCCeEEE-----EEecCCCCCceEEccccchhhceeeecccccccccCccccceEE
Confidence            457776664333  47999999999999988     653222    3578999999999887643211    12357899


Q ss_pred             EeeC-CceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           75 AEHA-NMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        75 i~~~-~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      |.++ ..+.|.|.|+|++|+.+||++|+.+..
T Consensus       102 i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2         102 LHNKETEEVHLFFAKKLEEKIRWLRAFREERK  133 (162)
T ss_dssp             EEESSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            9764 356899999999999999999998754

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6.5e-09  Score=73.53  Aligned_cols=78  Identities=18%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             eEEEEEEeCCeEEEcccCCCCCCcc-----------CccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcC
Q psy407           20 HNVYLLLATHVMVFSPEISGLGFEE-----------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   88 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~~~e-----------~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Ae   88 (160)
                      +.|||.|-+..|.|     .+....           -..++.|+|.++.|..+.+.  ...+|+|.|..+..+.|.|.|+
T Consensus        40 k~r~~fLF~d~Li~-----~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~~~~~~l~a~  112 (133)
T d1dbha2          40 HERHIFLFDGLMIC-----CKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDT--NEYKHAFEIILKDENSVIFSAK  112 (133)
T ss_dssp             SCEEEEEESSEEEE-----EEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCS--SSCCSEEEECCTTSCCEEEECS
T ss_pred             CeEEEEEecCeEEE-----EEecccccccccCCCccEEEEeeeecccccccccCCC--cccccceeEEcCCCcEEEEEEC
Confidence            68999999998887     542211           23568999999999876543  2567899998776678999999


Q ss_pred             CHHHHHHHHHHHHHhH
Q psy407           89 TRESMIQWMNALSLAS  104 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~  104 (160)
                      |++|+.+||++|..+.
T Consensus       113 s~~eK~~W~~~l~~~~  128 (133)
T d1dbha2         113 SAEEKNNWMAALISLQ  128 (133)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998753

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=8.5e-09  Score=71.65  Aligned_cols=79  Identities=8%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             ceEEEEEEeCC--eEEEcccCCCCCCcc--CccceEEEcCCeE-EEecCCC-------CccCceeeEEEee-CCceEEEE
Q psy407           19 CHNVYLLLATH--VMVFSPEISGLGFEE--EKLLGSILLPSYK-ISPCSSD-------DKVFRKFSFKAEH-ANMRTYYF   85 (160)
Q Consensus        19 WkkRWFVL~~~--~L~y~~~~yYk~~~e--~~~~g~I~L~~~~-V~~~~~~-------~~~~~~~~F~i~~-~~~r~~~l   85 (160)
                      +|+|||+|..+  +|+      |++..+  ....+.|+|..+. |......       .......+|.|.. .+.++++|
T Consensus        26 ~k~R~f~L~~d~~~i~------~~~~~~~~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l   99 (119)
T d1maia_          26 RRERFYKLQEDCKTIW------QESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDL   99 (119)
T ss_dssp             EEEEEEEECTTSSEEE------ECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEE
T ss_pred             CEEEEEEEcCCCCEEE------EeCCCCCCCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEE
Confidence            46799999753  454      443332  4567999999854 4443211       1112346788875 34589999


Q ss_pred             EcCCHHHHHHHHHHHHHh
Q psy407           86 AADTRESMIQWMNALSLA  103 (160)
Q Consensus        86 ~Aese~e~~~Wi~aL~~a  103 (160)
                      .|+|++++..||.+|+..
T Consensus       100 ~a~s~~~~~~Wv~~L~~L  117 (119)
T d1maia_         100 IAPSPADAQHWVQGLRKI  117 (119)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHH
Confidence            999999999999999874

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.4e-08  Score=67.53  Aligned_cols=96  Identities=8%  Similarity=0.032  Sum_probs=70.0

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCC--Cc----cCccceEEEcCCeEEEecCCCCccCceeeEEEe
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLG--FE----EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE   76 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~--~~----e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~   76 (160)
                      |.|-|.+.+.+...+..+.|+|.|-+..|.|     -|-  ..    .......|.+.++.|....+.    ..+.|.|.
T Consensus        15 ~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~-----~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~f~i~   85 (121)
T d1ntya2          15 LQESFQVWDPKTLIRKGRERHLFLFEMSLVF-----SKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG----DPCKFALW   85 (121)
T ss_dssp             EEEEEEEECSSSSSCCEEEEEEEEESSEEEE-----EEEEECTTCCEEEEEEEEEEGGGEEEECCCTT----CTTEEEEE
T ss_pred             EEeEEEEEcccccCCCCcEEEEEeeCCeEEE-----EEEecCCCCCceeEEEeeEEecceEEEEcCCC----CCceEEEE
Confidence            3456667777777778999999999998887     431  11    124667788888887765442    34577774


Q ss_pred             e----CCceEEEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           77 H----ANMRTYYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        77 ~----~~~r~~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      .    .....|.|.|.|++++++||.+|+.+...+
T Consensus        86 ~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~eq  120 (121)
T d1ntya2          86 VGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER  120 (121)
T ss_dssp             ESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             EecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            3    234579999999999999999999987544

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.5e-07  Score=65.05  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             eEEEEEEeCCeEEEcccCCCCCCc-----------------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceE
Q psy407           20 HNVYLLLATHVMVFSPEISGLGFE-----------------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRT   82 (160)
Q Consensus        20 kkRWFVL~~~~L~y~~~~yYk~~~-----------------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~   82 (160)
                      +.|+|.|-+..|.|     -|...                 .......|.|.++.|....+.  ..-.+.|.+.++ .+.
T Consensus        38 k~r~~FLFnD~Ll~-----tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~--~~~~~~~~~~~~-~~~  109 (142)
T d1ki1b2          38 KELYGFLFNDFLLL-----TQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDP--SGDEPIFHISHI-DRV  109 (142)
T ss_dssp             CCCEEEEESSEEEE-----EEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSS--CCC---CEEEET-TEE
T ss_pred             CEEEEEEecCEEEE-----EEeccccceeccccccccCCceeEEEEcccchhhheeeccCCc--ccceeEEEecCC-CEE
Confidence            58899998888886     32211                 123456789999888776442  244567888775 478


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhHhhc
Q psy407           83 YYFAADTRESMIQWMNALSLASILQ  107 (160)
Q Consensus        83 ~~l~Aese~e~~~Wi~aL~~a~~~~  107 (160)
                      |.|.|+|++|..+||++|+.|+...
T Consensus       110 ~~l~a~s~~ek~~W~~~I~~Ai~~~  134 (142)
T d1ki1b2         110 YTLRAESINERTAWVQKIKAASELY  134 (142)
T ss_dssp             EECBCSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997543

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.1e-05  Score=56.75  Aligned_cols=90  Identities=19%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCC
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSD   64 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~   64 (160)
                      |-|.|..   +.+.+..+.|+|.|-+..|.|     -+....                  ....+.+.+....|...+. 
T Consensus        27 ~eG~L~~---k~~~~k~k~r~~FLF~D~Ll~-----tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-   97 (140)
T d1xcga2          27 HEGPLTW---RISKDKTLDLHVLLLEDLLVL-----LQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT-   97 (140)
T ss_dssp             EEEEEEE---CCSSSCCCEEEEEEESSEEEE-----EEECSSCEECCC-------------CCCSEEEGGGEEEEECSS-
T ss_pred             EEeeEEE---EecCCCceEEEEEEecCeEEE-----EEecccceeeccccccccccccceeeecceEecceEEEecCCC-
Confidence            3455543   334467889999999888887     332211                  1122345555555544432 


Q ss_pred             CccCceeeEEEeeC----CceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           65 DKVFRKFSFKAEHA----NMRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        65 ~~~~~~~~F~i~~~----~~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                          .+++|.+.+.    ....|.|.|+|++|..+||++|+.|+.
T Consensus        98 ----~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~  138 (140)
T d1xcga2          98 ----DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  138 (140)
T ss_dssp             ----CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ----CCCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHH
Confidence                2456777542    246899999999999999999999863

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.08  E-value=2.1e-05  Score=53.81  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=60.4

Q ss_pred             ccceEEEEecCCCCCCceEEEEEEeCCeEEEcccCCCCCCcc------------------CccceEEEcCCeEEEecCCC
Q psy407            3 HVCFLIILNDNMASTLCHNVYLLLATHVMVFSPEISGLGFEE------------------EKLLGSILLPSYKISPCSSD   64 (160)
Q Consensus         3 ~~~~~~~~~~~~~~k~WkkRWFVL~~~~L~y~~~~yYk~~~e------------------~~~~g~I~L~~~~V~~~~~~   64 (160)
                      |-|.|+ ++.+  .+.=+.|++.|-+..|.+     -|..++                  ......|.|....|......
T Consensus         3 ~eG~L~-~~~~--~~k~~er~vFLF~d~Ll~-----~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~d   74 (114)
T d1txda2           3 HEGPLV-WKVN--RDKTIDLYTLLLEDILVL-----LQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD   74 (114)
T ss_dssp             EEEEEE-EESS--SSCBCCEEEEEESSEEEE-----EEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-
T ss_pred             eeeeEE-EEec--CCCceEEEEEEecCeEEE-----EEecccccccccccccccccccceeeecCcEEcccEEEEEcCCC
Confidence            567776 3332  223468888888877776     332221                  12234688888888776432


Q ss_pred             CccCceeeEEEeeCC--ceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           65 DKVFRKFSFKAEHAN--MRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        65 ~~~~~~~~F~i~~~~--~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                          .+..|.|.+.+  ...|.|.|.|+++.+.||++|++++
T Consensus        75 ----~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~  112 (114)
T d1txda2          75 ----NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMA  112 (114)
T ss_dssp             ----CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ----CCCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence                24468776542  3579999999999999999999985

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=3.8e-05  Score=54.75  Aligned_cols=81  Identities=21%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             ceEEEEEEeCCeEEEcccCCCCCCc----------cCccceEEEcCCeEEEecCCCCccCceeeEEEeeCCceEEEEEcC
Q psy407           19 CHNVYLLLATHVMVFSPEISGLGFE----------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   88 (160)
Q Consensus        19 WkkRWFVL~~~~L~y~~~~yYk~~~----------e~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~~r~~~l~Ae   88 (160)
                      =+.|+|.|-+..|.|     -|...          .-...+.|.+..+.|......+  ...|.|.+..+ ...|.|.|.
T Consensus        40 ~~~R~~FLF~~~Li~-----cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~~~~~--~~~f~~~~~~~-~~~~~l~a~  111 (147)
T d1kz7a2          40 PMQRHLFLHEKAVLF-----CKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGD--TKKFEIWYNAR-EEVYIIQAP  111 (147)
T ss_dssp             CEEEEEEEESSEEEE-----EEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTTB--TTEEEEEETTT-TEEEEEECS
T ss_pred             CceEEEEEecCcEEE-----EEecccCCcccccCceEEEeeEEecCCceeEecCCCC--cceEEEEeCCC-CcEEEEEeC
Confidence            478999999888887     33211          1235788889998877654422  23444444333 468999999


Q ss_pred             CHHHHHHHHHHHHHhHhhc
Q psy407           89 TRESMIQWMNALSLASILQ  107 (160)
Q Consensus        89 se~e~~~Wi~aL~~a~~~~  107 (160)
                      |+++...||.+|+.+...+
T Consensus       112 s~eeK~~W~~~I~~~l~~q  130 (147)
T d1kz7a2         112 TPEIKAAWVNAIRKVLTSQ  130 (147)
T ss_dssp             SHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986444

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.001  Score=44.70  Aligned_cols=78  Identities=19%  Similarity=0.237  Sum_probs=60.6

Q ss_pred             CCCceEEEEEEeCCeEEEcccCCCCCCccCccceEEEcCCeEEEe-cCCCCccCceeeEEEeeCC-ceEEEEEcCCHHHH
Q psy407           16 STLCHNVYLLLATHVMVFSPEISGLGFEEEKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESM   93 (160)
Q Consensus        16 ~k~WkkRWFVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~~V~~-~~~~~~~~~~~~F~i~~~~-~r~~~l~Aese~e~   93 (160)
                      ...|+|-...|.+..|..+|         .+-...|+|+=|.|+. ....|+-  ...|+|.+++ ..+.+|.|.+..+.
T Consensus        24 ~~rW~rVl~~L~ed~Lt~s~---------~~d~k~IPLKmcyvtR~~~~~D~E--nR~lElhSpDG~~t~iLR~kD~a~A   92 (105)
T d2adza1          24 GERWQRVLLSLAEDALTVSP---------LSEAKHVSLKMAYVSRRCTPTDPE--PRYLEICAADGQDAVFLRAKDEASA   92 (105)
T ss_dssp             CCCCEEEEEEEETTEEEEES---------SCSCEEEETTTCEEEEECCSSCCS--SCEEEEEETTTTEEEEECCSSHHHH
T ss_pred             ccceeeeeeecccceEEeec---------ccccceeeeeeEEeeecccCCCCc--ccEEEEECCCCCceEEEEcCCHHHH
Confidence            34699999999999998844         1245689999999877 3333332  2379998875 45899999999999


Q ss_pred             HHHHHHHHHhH
Q psy407           94 IQWMNALSLAS  104 (160)
Q Consensus        94 ~~Wi~aL~~a~  104 (160)
                      +.|.++|..++
T Consensus        93 ~~WF~Aihs~i  103 (105)
T d2adza1          93 RSWAGAIQAQI  103 (105)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=8.7e-05  Score=51.52  Aligned_cols=77  Identities=13%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             CceEEEEEEeCCeEEEcccCCCCCCcc-----CccceEEEcCCeEEEecCCCCccCceeeEEEeeC--Cc----eEEEEE
Q psy407           18 LCHNVYLLLATHVMVFSPEISGLGFEE-----EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA--NM----RTYYFA   86 (160)
Q Consensus        18 ~WkkRWFVL~~~~L~y~~~~yYk~~~e-----~~~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~--~~----r~~~l~   86 (160)
                      .=+.|+|.|-+..|.|     .|....     -..++.|.|.++.|+.....   .  ..|.|...  +.    ..+.+.
T Consensus        24 k~k~R~vFLF~~~ll~-----~K~~~~~~~~~y~~K~~i~l~~~~v~e~~gd---~--~~F~i~~~~~~~~~~~~~~~~~   93 (119)
T d1fhoa_          24 PPKLRYVFLFRNKIMF-----TEQDASTSPPSYTHYSSIRLDKYNIRQHTTD---E--DTIVLQPQEPGLPSFRIKPKDF   93 (119)
T ss_dssp             SCEEEEEEEETTEEEE-----EEECCSSSSCCCSSCCEEESSSCEEEEECTT---C--CEEEEECCSTTCCCBCCCCCSS
T ss_pred             CceEEEEEEEcCeEEE-----EEeccCCCCceEEEecEEECCceEEEEcCCC---C--cEEEEEeCCCCCCcceEEEEEe
Confidence            3345666666666665     442221     33689999999998775321   2  25777542  21    256678


Q ss_pred             cCCHHHHHHHHHHHHHhH
Q psy407           87 ADTRESMIQWMNALSLAS  104 (160)
Q Consensus        87 Aese~e~~~Wi~aL~~a~  104 (160)
                      |.|+++++.||++|+.+.
T Consensus        94 a~s~~~K~~Wv~~I~e~~  111 (119)
T d1fhoa_          94 ETSEYVRKAWLRDIAEEQ  111 (119)
T ss_dssp             SSCSHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            899999999999999874

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.65  E-value=0.34  Score=34.31  Aligned_cols=58  Identities=12%  Similarity=0.120  Sum_probs=46.5

Q ss_pred             cceEEEcCCeEEEecCCCCccCceeeEEEeeCC-------ceEEEEEcCCHHHHHHHHHHHHHhHh
Q psy407           47 LLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------MRTYYFAADTRESMIQWMNALSLASI  105 (160)
Q Consensus        47 ~~g~I~L~~~~V~~~~~~~~~~~~~~F~i~~~~-------~r~~~l~Aese~e~~~Wi~aL~~a~~  105 (160)
                      .+..|++....|...+..+. ...+.++|+|..       .+.|.|++.+.+..+..|++|++..+
T Consensus        92 Fr~mIP~~alQVR~~~~~~~-es~~vwEiiH~kSe~egRpE~vfqlc~St~E~K~~flK~Ir~ilr  156 (162)
T d1foea2          92 FRHMIPTEALQVRALPSADA-EANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILR  156 (162)
T ss_dssp             CEEEEEGGGEEEECCCCTTT-TSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeeeeEeecccccCC-CcceEEEEEeecccccCCcceEEEEecCCHHHHHHHHHHHHHHHH
Confidence            45689999888877655432 567899998842       48999999999999999999998654

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.56  Score=31.78  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=56.3

Q ss_pred             eEEEEecCCCCCCceEEEEEEeC--CeEEEcccCCCCCCccCccceEEEcCCeE-EEecC-CCCc---------------
Q psy407            6 FLIILNDNMASTLCHNVYLLLAT--HVMVFSPEISGLGFEEEKLLGSILLPSYK-ISPCS-SDDK---------------   66 (160)
Q Consensus         6 ~~~~~~~~~~~k~WkkRWFVL~~--~~L~y~~~~yYk~~~e~~~~g~I~L~~~~-V~~~~-~~~~---------------   66 (160)
                      .++.+.+.  .+.-+.+.|.|+.  ..|+|      +++  .+....|.|.... |.... ..+.               
T Consensus        12 ~f~K~~~~--~~~~~~~~frlD~~g~~L~W------~~~--~k~~~~l~i~~I~evR~G~~~~~~k~~kl~~~~~~~~~~   81 (131)
T d2zkmx3          12 RFIKWDDE--TTVASPVILRVDPKGYYLYW------TYQ--SKEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPD   81 (131)
T ss_dssp             EEEEECTT--TCCEEEEEEEECTTSCEEEE------EET--TSCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTT
T ss_pred             eEEEEcCC--CCccceEEEEECCCCCEEEE------ECC--CCceeEEEecceeeEEeccccCCccHHHHhhhhhccCcC
Confidence            34555443  3456788899984  35554      433  2345678887754 43321 1110               


Q ss_pred             -cCceeeEEEeeC----CceEEEEEcCCHHHHHHHHHHHHHhH
Q psy407           67 -VFRKFSFKAEHA----NMRTYYFAADTRESMIQWMNALSLAS  104 (160)
Q Consensus        67 -~~~~~~F~i~~~----~~r~~~l~Aese~e~~~Wi~aL~~a~  104 (160)
                       .-...+|.|...    +.+..+|.|.|+++.+.|+..|+..+
T Consensus        82 ~~~e~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~  124 (131)
T d2zkmx3          82 NSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALV  124 (131)
T ss_dssp             CCGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred             CCccccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHH
Confidence             011238998874    24788999999999999999999865

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=5.7  Score=26.18  Aligned_cols=77  Identities=9%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             EEEeCCeEEEcccCCCCCCccCccceEEEcCCe-EEEecCCCC-ccCceeeEEEeeCCceEEEEEcC-CHHHHHHHHHHH
Q psy407           24 LLLATHVMVFSPEISGLGFEEEKLLGSILLPSY-KISPCSSDD-KVFRKFSFKAEHANMRTYYFAAD-TRESMIQWMNAL  100 (160)
Q Consensus        24 FVL~~~~L~y~~~~yYk~~~e~~~~g~I~L~~~-~V~~~~~~~-~~~~~~~F~i~~~~~r~~~l~Ae-se~e~~~Wi~aL  100 (160)
                      ..|....|.+     -..+.+......|+|... .|+.+.... .....+.+.|...+.|.+-|+-. +.++..+|..+|
T Consensus        32 L~lTnyrliF-----~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDfr~~~f~f~~e~~~~~~v~~~L  106 (125)
T d1zsqa1          32 LTVTNYRLYF-----KSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENL  106 (125)
T ss_dssp             EEEESSEEEE-----EESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHH
T ss_pred             EEEEeeEEEE-----EcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEeccCeEEEEEEcCCccHHHHHHHHH
Confidence            5667777775     333344444566777653 344432211 12345689999999999999874 446778999999


Q ss_pred             HHhHh
Q psy407          101 SLASI  105 (160)
Q Consensus       101 ~~a~~  105 (160)
                      ...+.
T Consensus       107 ~~~a~  111 (125)
T d1zsqa1         107 MKYAF  111 (125)
T ss_dssp             HHHSC
T ss_pred             HHhCc
Confidence            99864