Psyllid ID: psy4082


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80------
MRAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDFR
cccccEEEEEEEEEcccccEEEEEEcccccHHHHHHHHccccccccccccccEEEccccccccccccccEEEEEcccccccccccc
cccHHHHHHHHHHHHHHHHHHEEEEEcccccEEEEEccccccccccccccccEEcccccccccccccccEEEEccccHHHHHHHcc
MRAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMdgrkmgygsmqgipmvasspvrhdspigmnalevtsyqppwkalsdfr
MRAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNAlevtsyqppwkalsdfr
MRAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDFR
***AGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSM**************************************
****GYYQLLWHRVSVHFLARVGIM************************GIPM********************SYQPPWKALSDFR
MRAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDFR
*RAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDFR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooo
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRAAGYYQLLWHRVSVHFLARVGIMVNAPLRTLLFISMDGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query86 2.2.26 [Sep-21-2011]
P53405349 Insulin gene enhancer pro yes N/A 0.441 0.108 0.657 3e-09
P61374349 Insulin gene enhancer pro yes N/A 0.441 0.108 0.657 4e-09
P61372349 Insulin gene enhancer pro yes N/A 0.441 0.108 0.657 4e-09
P61373349 Insulin gene enhancer pro N/A N/A 0.441 0.108 0.657 4e-09
P61371349 Insulin gene enhancer pro yes N/A 0.441 0.108 0.657 4e-09
P50211349 Insulin gene enhancer pro yes N/A 0.441 0.108 0.657 4e-09
P53410319 Insulin gene enhancer pro no N/A 0.511 0.137 0.568 5e-09
P50212340 Insulin gene enhancer pro N/A N/A 0.511 0.129 0.545 6e-09
P53409363 Insulin gene enhancer pro N/A N/A 0.441 0.104 0.578 6e-09
P53408358 Insulin gene enhancer pro N/A N/A 0.511 0.122 0.522 9e-09
>sp|P53405|ISL1_DANRE Insulin gene enhancer protein isl-1 OS=Danio rerio GN=isl1 PE=2 SV=1 Back     alignment and function desciption
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 48  MQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDF 85
           M G PMVA+SP RHD  +  N +EV SYQPPWK LSDF
Sbjct: 260 MTGTPMVATSPERHDGGLQANQVEVQSYQPPWKVLSDF 297




Binds to one of the cis-acting domain of the insulin gene enhancer. May be involved in subtype specialization of primary motoneurons.
Danio rerio (taxid: 7955)
>sp|P61374|ISL1_RAT Insulin gene enhancer protein ISL-1 OS=Rattus norvegicus GN=Isl1 PE=2 SV=1 Back     alignment and function description
>sp|P61372|ISL1_MOUSE Insulin gene enhancer protein ISL-1 OS=Mus musculus GN=Isl1 PE=1 SV=1 Back     alignment and function description
>sp|P61373|ISL1_MESAU Insulin gene enhancer protein ISL-1 OS=Mesocricetus auratus GN=ISL1 PE=2 SV=1 Back     alignment and function description
>sp|P61371|ISL1_HUMAN Insulin gene enhancer protein ISL-1 OS=Homo sapiens GN=ISL1 PE=1 SV=1 Back     alignment and function description
>sp|P50211|ISL1_CHICK Insulin gene enhancer protein ISL-1 OS=Gallus gallus GN=ISL1 PE=2 SV=1 Back     alignment and function description
>sp|P53410|ISL2_CHICK Insulin gene enhancer protein ISL-2 (Fragment) OS=Gallus gallus GN=ISL2 PE=2 SV=1 Back     alignment and function description
>sp|P50212|ISL2B_ONCTS Insulin gene enhancer protein ISL-2B (Fragment) OS=Oncorhynchus tschawytscha GN=isl2b PE=2 SV=1 Back     alignment and function description
>sp|P53409|ISL3_ONCTS Insulin gene enhancer protein ISL-3 OS=Oncorhynchus tschawytscha GN=isl3 PE=2 SV=1 Back     alignment and function description
>sp|P53408|ISL2A_ONCTS Insulin gene enhancer protein ISL-2A OS=Oncorhynchus tschawytscha GN=isl2a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
328707559 513 PREDICTED: insulin gene enhancer protein 0.546 0.091 0.851 2e-18
328707561 487 PREDICTED: insulin gene enhancer protein 0.546 0.096 0.851 2e-18
242009361 433 LIM/homeobox protein Lhx9, putative [Ped 0.546 0.108 0.829 2e-18
270011029 411 tailup [Tribolium castaneum] 0.546 0.114 0.851 5e-18
258645165 431 tailup [Tribolium castaneum] 0.546 0.109 0.851 1e-17
156552953 458 PREDICTED: insulin gene enhancer protein 0.546 0.102 0.808 5e-17
332023208 432 Insulin gene enhancer protein ISL-1 [Acr 0.546 0.108 0.787 8e-17
157119485 398 insulinprotein enhancer protein isl [Aed 0.534 0.115 0.829 8e-17
293339636 348 tailup [Megaselia abdita] 0.546 0.135 0.744 1e-16
195386470 529 GJ24442 [Drosophila virilis] gi|19414838 0.546 0.088 0.744 1e-16
>gi|328707559|ref|XP_001944557.2| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/47 (85%), Positives = 45/47 (95%)

Query: 39  DGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDF 85
           DGRKMGYGSMQGIPMVASSPVRHDSP+GMN ++V S+QPPWKALS+F
Sbjct: 394 DGRKMGYGSMQGIPMVASSPVRHDSPLGMNQIDVQSFQPPWKALSEF 440




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707561|ref|XP_003243430.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242009361|ref|XP_002425456.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis] gi|212509292|gb|EEB12718.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|270011029|gb|EFA07477.1| tailup [Tribolium castaneum] Back     alignment and taxonomy information
>gi|258645165|ref|NP_001158279.1| tailup [Tribolium castaneum] Back     alignment and taxonomy information
>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332023208|gb|EGI63464.1| Insulin gene enhancer protein ISL-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|157119485|ref|XP_001653405.1| insulinprotein enhancer protein isl [Aedes aegypti] gi|108883188|gb|EAT47413.1| AAEL001500-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|293339636|gb|ADE44110.1| tailup [Megaselia abdita] Back     alignment and taxonomy information
>gi|195386470|ref|XP_002051927.1| GJ24442 [Drosophila virilis] gi|194148384|gb|EDW64082.1| GJ24442 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
FB|FBgn0003896 534 tup "tailup" [Drosophila melan 0.546 0.088 0.744 5.1e-16
UNIPROTKB|D6RAK3260 ISL1 "Insulin gene enhancer pr 0.511 0.169 0.590 6.4e-09
UNIPROTKB|J9P914113 ISL2 "Uncharacterized protein" 0.511 0.389 0.522 9.7e-09
UNIPROTKB|F1N959303 F1N959 "Uncharacterized protei 0.511 0.145 0.590 1e-08
UNIPROTKB|P53410319 ISL2 "Insulin gene enhancer pr 0.511 0.137 0.568 1.1e-08
UNIPROTKB|E1BWH2339 E1BWH2 "Uncharacterized protei 0.511 0.129 0.590 1.3e-08
UNIPROTKB|P50211349 ISL1 "Insulin gene enhancer pr 0.511 0.126 0.590 1.4e-08
UNIPROTKB|A6H796349 ISL1 "ISL1 protein" [Bos tauru 0.511 0.126 0.590 1.4e-08
UNIPROTKB|P61371349 ISL1 "Insulin gene enhancer pr 0.511 0.126 0.590 1.4e-08
MGI|MGI:101791349 Isl1 "ISL1 transcription facto 0.511 0.126 0.590 1.4e-08
FB|FBgn0003896 tup "tailup" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 208 (78.3 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 35/47 (74%), Positives = 43/47 (91%)

Query:    39 DGRKMGYGSMQGIPMVASSPVRHDSPIGMNALEVTSYQPPWKALSDF 85
             +GRK+GYG+MQGIPM+ASSPVRHDSP+ +  L+V +YQPPWKALSDF
Sbjct:   312 EGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQPPWKALSDF 358




GO:0008293 "torso signaling pathway" evidence=IGI
GO:0007362 "terminal region determination" evidence=IGI
GO:0007390 "germ-band shortening" evidence=IMP
GO:0008258 "head involution" evidence=NAS
GO:0046665 "amnioserosa maintenance" evidence=IMP
GO:0007411 "axon guidance" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008045 "motor neuron axon guidance" evidence=IMP
GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA
GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI
GO:0007391 "dorsal closure" evidence=IMP
GO:0008407 "chaeta morphogenesis" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA
GO:0070983 "dendrite guidance" evidence=IMP
GO:0035310 "notum cell fate specification" evidence=IMP
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0007507 "heart development" evidence=IMP
GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA
GO:0048542 "lymph gland development" evidence=IMP
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA
GO:0022416 "chaeta development" evidence=IMP
GO:0007521 "muscle cell fate determination" evidence=IMP
UNIPROTKB|D6RAK3 ISL1 "Insulin gene enhancer protein ISL-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P914 ISL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N959 F1N959 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P53410 ISL2 "Insulin gene enhancer protein ISL-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWH2 E1BWH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P50211 ISL1 "Insulin gene enhancer protein ISL-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A6H796 ISL1 "ISL1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61371 ISL1 "Insulin gene enhancer protein ISL-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:101791 Isl1 "ISL1 transcription factor, LIM/homeodomain" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53405ISL1_DANRENo assigned EC number0.65780.44180.1088yesN/A
P50211ISL1_CHICKNo assigned EC number0.65780.44180.1088yesN/A
P61374ISL1_RATNo assigned EC number0.65780.44180.1088yesN/A
P61371ISL1_HUMANNo assigned EC number0.65780.44180.1088yesN/A
P61372ISL1_MOUSENo assigned EC number0.65780.44180.1088yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
2rgt_A169 Crystal Structure Of Lhx3 Lim Domains 1 And 2 With 2e-05
3mmk_A169 The Structural Basis For Partial Redundancy In A Cl 4e-04
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The Binding Domain Of Isl1 Length = 169 Back     alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 18/28 (64%), Positives = 21/28 (75%) Query: 52 PMVASSPVRHDSPIGMNALEVTSYQPPW 79 PMVA+SP RHD + N +EV SYQPPW Sbjct: 142 PMVAASPERHDGGLQANPVEVQSYQPPW 169
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of Transcription Factors, The Lim-Homeodomain Proteins, In Neural Cell Type Specification Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
2rgt_A169 Fusion of LIM/homeobox protein LHX3, linker, INSU 5e-04
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169 Back     alignment and structure
 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 50  GIPMVASSPVRHDSPIGMNALEVTSYQPPW 79
           G PMVA+SP RHD  +  N +EV SYQPPW
Sbjct: 140 GTPMVAASPERHDGGLQANPVEVQSYQPPW 169


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
2rgt_A169 Fusion of LIM/homeobox protein LHX3, linker, INSU 94.24
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Back     alignment and structure
Probab=94.24  E-value=0.016  Score=39.18  Aligned_cols=32  Identities=59%  Similarity=1.025  Sum_probs=21.8

Q ss_pred             ccccceeeeccCcCCCCCCCCcceeeecCCCc
Q psy4082          48 MQGIPMVASSPVRHDSPIGMNALEVTSYQPPW   79 (86)
Q Consensus        48 mtG~PmVAsSPvrhes~i~~~pveVqsyqpPW   79 (86)
                      +..+.+-+..+..++...+.++.++++|||||
T Consensus       138 rprt~~~~~q~~~l~~~f~~~~~~~~~~~~~~  169 (169)
T 2rgt_A          138 GGGTPMVAASPERHDGGLQANPVEVQSYQPPW  169 (169)
T ss_dssp             ---EEEECCCCEECCSSCCCCCCCCCC-----
T ss_pred             CCCCcccHHHHHHHHHHHhCCCCcccccCCCC
Confidence            44457778889999999999999999999999




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00