Psyllid ID: psy4087

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MSALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPSYE
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msalesdeWFTTALHYLVLISEVDEVEIFKICLEYWNALSsdlyrespymssasglpimdlpnnkshtMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGsisgamheeDEKRFLVTVIKDLLGLceqkkgkdnkaiiASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEfmhgpsye
Flexible Loop (DISEMBL)
MSALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVRefmkdtdsinlYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLceqkkgkdnkaiiasNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPSYE
Low Complexity Region (SEG)
MSALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPeevlvvenengevvREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPSYE
Disordered region (IsUnstruct)
*******EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYR**************************AVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM******
Disordered Region (DISOPRED)
**ALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESP***************************RQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGP***
Disordered Region (DISEMBL)
MSALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPSYE
Disordered Region (DISPRO)
*SALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPSYE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q80U96	1071	Exportin-1 OS=Rattus norv	yes	N/A	0.907	0.211	0.775	1e-108
Q6P5F9	1071	Exportin-1 OS=Mus musculu	yes	N/A	0.907	0.211	0.775	1e-107
O14980	1071	Exportin-1 OS=Homo sapien	yes	N/A	0.923	0.214	0.784	1e-107
Q9TVM2	1063	Exportin-1 OS=Drosophila	yes	N/A	0.907	0.212	0.738	1e-101
P14068	1078	Exportin-1 OS=Schizosacch	yes	N/A	0.963	0.222	0.617	1e-85
Q54EV7	1057	Exportin-1 OS=Dictyosteli	yes	N/A	0.887	0.209	0.588	1e-78
P30822	1084	Exportin-1 OS=Saccharomyc	yes	N/A	0.967	0.222	0.515	7e-73

>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/241 (77%), Positives = 206/241 (85%), Gaps = 15/241 (6%)

Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSAS----GLPIMDLPN 63
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS    G    D+P 
Sbjct: 345 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP- 403

Query: 64  NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINL 123
                      RRQ Y  VL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINL
Sbjct: 404 ----------PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINL 453

Query: 124 YKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 183
           YKNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDE
Sbjct: 454 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 513

Query: 184 KRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243
           KRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 514 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 573

Query: 244 H 244
           H
Sbjct: 574 H 574

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap.
Rattus norvegicus (taxid: 10116)

>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/241 (77%), Positives = 206/241 (85%), Gaps = 15/241 (6%)

Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSAS----GLPIMDLPN 63
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS    G    D+P 
Sbjct: 345 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP- 403

Query: 64  NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINL 123
                      RRQ Y  VL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINL
Sbjct: 404 ----------PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINL 453

Query: 124 YKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 183
           YKNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDE
Sbjct: 454 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 513

Query: 184 KRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243
           KRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 514 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 573

Query: 244 H 244
           H
Sbjct: 574 H 574

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap.

Mus musculus (taxid: 10090)

>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/237 (78%), Positives = 208/237 (87%), Gaps = 7/237 (2%)

Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++    + S 
Sbjct: 345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL----SGSQ 398

Query: 68  TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNM 127
             D    RRQ Y P+L K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINLYKNM
Sbjct: 399 HFD-VPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
           RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct: 458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase RAN in its active GTP-bound form (Ran-GTP). Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap. Several viruses, among them HIV-1, HTLV-1 and influenza A use it to export their unspliced or incompletely spliced RNAs out of the nucleus. Interacts with, and mediates the nuclear export of HIV-1 Rev and HTLV-1 Rex proteins. Involved in HTLV-1 Rex multimerization.

Homo sapiens (taxid: 9606)

>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 199/237 (83%), Gaps = 11/237 (4%)

Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
           ++   AL YLV+ISEV++VE+FKICLEYWN+L  DLY    +            P  +S 
Sbjct: 341 DYLNQALMYLVMISEVEDVEVFKICLEYWNSLVEDLYNSEFFH-----------PTLEST 389

Query: 68  TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNM 127
              +   RR+FYAP+L+K+R+IM+SRMAKPEEVLVVENENGEVVREFMKDT+SINLYKNM
Sbjct: 390 KRQQVYPRRRFYAPILSKVRFIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNM 449

Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
           RETLV+LTHL+  DT+++MT KL  QVNG+E+SWKNLNTLCWAIGSISGA  EEDEKRFL
Sbjct: 450 RETLVFLTHLDSVDTDRIMTLKLLNQVNGSEFSWKNLNTLCWAIGSISGAFCEEDEKRFL 509

Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 510 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 566

Receptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form. Required for the function or maintenance of certain tissues such as brain and gut. Involved in the export of dl from the nucleus to the cytoplasm.

Drosophila melanogaster (taxid: 7227)

>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xpo1 PE=1 SV=3

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 188/246 (76%), Gaps = 6/246 (2%)

Query: 5   ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNN 64
           E+ E    A  YL+ IS ++E EIFKICLEYW+ L + LY E   +  +   P+++L + 
Sbjct: 330 ENQEVLLNAHSYLLNISRINEREIFKICLEYWSKLVAQLYEEMQQIPMSEMNPLLNLSSP 389

Query: 65  KS------HTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDT 118
            S      + +     R+  Y  +L+ +R +M+  M KPEEVL+VEN+ GE+VREF+K+T
Sbjct: 390 TSLISSNPNMLANLPLRKHIYKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVKET 449

Query: 119 DSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAM 178
           D+I LYK+MRE LVYLTHL+  DTE VMT+KL + V GTEWSW+NLNTLCWAIGSISGAM
Sbjct: 450 DTITLYKSMREVLVYLTHLDVVDTEIVMTEKLARIVVGTEWSWQNLNTLCWAIGSISGAM 509

Query: 179 HEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNK 238
           +EE EKRFLV VIKDLLGLCE K+GKDNKA++ASNIMYVVGQYPRFL+AHWKFLKTVVNK
Sbjct: 510 NEEMEKRFLVNVIKDLLGLCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWKFLKTVVNK 569

Query: 239 LFEFMH 244
           LFEFMH
Sbjct: 570 LFEFMH 575

Receptor for the leucine-rich nuclear export signal (NES).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2

 Score =  293 bits (749), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 179/236 (75%), Gaps = 15/236 (6%)

Query: 9   WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHT 68
           + T A   LV IS +DE+E+FKICLEYWN LSS+LY +    ++               T
Sbjct: 345 YLTLAHEILVNISNIDELELFKICLEYWNFLSSNLYSDIATFTT---------------T 389

Query: 69  MDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMR 128
           +     R Q Y  VL+K+R +++  MAKPEEV+VVE+ENG +VRE  KDTDS+ LY++MR
Sbjct: 390 LLSTPPRLQLYKSVLSKVRVVLIDHMAKPEEVIVVEDENGNIVRETTKDTDSLTLYESMR 449

Query: 129 ETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 188
           ETL++LTHL+  +T+ +M +KLQ  ++G E++++ LNTLCWAIGSISGA ++E EKRFLV
Sbjct: 450 ETLIFLTHLDSENTQHIMLEKLQTLISGREFTFQRLNTLCWAIGSISGAQNKEQEKRFLV 509

Query: 189 TVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           TVIKDLL LC+ KKGKDNKA+IAS+IMY+VGQYPRFL+ HWKFLKTVVNKLFEFMH
Sbjct: 510 TVIKDLLELCQNKKGKDNKAVIASDIMYIVGQYPRFLKDHWKFLKTVVNKLFEFMH 565

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES).

Dictyostelium discoideum (taxid: 44689)

>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRM1 PE=1 SV=1

 Score =  273 bits (699), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 132/256 (51%), Positives = 182/256 (71%), Gaps = 15/256 (5%)

Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E   + +    P++
Sbjct: 330 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEVQRLPATEMSPLI 389

Query: 60  DLP------NNKSHTMDEAVARR-----QFYAPVLTKIRYIMVSRMAKPEEVLVVENENG 108
            L       +  S  ++    +R       Y  + +++R +++  M +PEEVLVVEN+ G
Sbjct: 390 QLSVGSQAISTGSGALNPEYMKRFPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 449

Query: 109 EVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLC 168
           E+VREF+K++D+I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL 
Sbjct: 450 EIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 509

Query: 169 WAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH 228
           WAIGSISG M E+ EKRF+VTVIKDLL L  +K+GKDNKA++AS+IMYVVGQYPRFL+AH
Sbjct: 510 WAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 569

Query: 229 WKFLKTVVNKLFEFMH 244
           W FL+TV+ KLFEFMH
Sbjct: 570 WNFLRTVILKLFEFMH 585

Receptor for the leucine-rich nuclear export signal (NES).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
332024051	1093	Exportin-1 [Acromyrmex echinatior]	0.927	0.211	0.816	1e-111
380027108	895	PREDICTED: exportin-1-like [Apis florea]	0.911	0.253	0.804	1e-110
48120807	1062	PREDICTED: exportin-1 [Apis mellifera]	0.911	0.213	0.804	1e-110
340709138	1062	PREDICTED: exportin-1-like [Bombus terre	0.911	0.213	0.808	1e-110
156543308	1060	PREDICTED: exportin-1-like [Nasonia vitr	0.887	0.208	0.844	1e-110
350413068	1062	PREDICTED: exportin-1-like [Bombus impat	0.887	0.208	0.824	1e-109
260830375	1069	hypothetical protein BRAFLDRAFT_264300 [	0.903	0.210	0.810	1e-108
156392524	1076	predicted protein [Nematostella vectensi	0.907	0.210	0.799	1e-107
395829712	1071	PREDICTED: exportin-1 isoform 1 [Otolemu	0.923	0.214	0.789	1e-107
350582355	1006	PREDICTED: exportin-1 [Sus scrofa]	0.923	0.228	0.789	1e-107

>gi|332024051|gb|EGI64269.1| Exportin-1 [Acromyrmex echinatior]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/240 (81%), Positives = 214/240 (89%), Gaps = 9/240 (3%)

Query: 5   ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNN 64
           + +E    ALHYLVLISEVDEVEIFKICLEYWN L++DLY+E+P+++S+       L  +
Sbjct: 367 QMNEILVKALHYLVLISEVDEVEIFKICLEYWNGLAADLYKENPFVTSSP------LFMS 420

Query: 65  KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY 124
           K+ T+     RR FY  VLTK+RYIM+SRMAKPEEVLVVENENGEVVREFMKDTDSINLY
Sbjct: 421 KNMTVP---PRRLFYGQVLTKVRYIMISRMAKPEEVLVVENENGEVVREFMKDTDSINLY 477

Query: 125 KNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 184
           KNMRETLVYLTHL+Y DTE+VMT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK
Sbjct: 478 KNMRETLVYLTHLDYLDTERVMTEKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 537

Query: 185 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 538 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 597

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027108|ref|XP_003697274.1| PREDICTED: exportin-1-like [Apis florea]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 209/240 (87%), Gaps = 13/240 (5%)

Query: 7   DEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPI--MDLPNN 64
           +E    ALHYLVLISEV+EVEIFKICLEYWNAL+ DLYR +P++S      +  + LP  
Sbjct: 171 NELLLKALHYLVLISEVEEVEIFKICLEYWNALAMDLYRANPFVSPTPLFVVKNITLP-- 228

Query: 65  KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY 124
                    +RR FY PVLTK+RYIM+SRMAKPEEVLVVENENGEVVREFMKDTDSINLY
Sbjct: 229 ---------SRRLFYCPVLTKVRYIMISRMAKPEEVLVVENENGEVVREFMKDTDSINLY 279

Query: 125 KNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 184
           KNMRETLVYLTHL+Y DTE++MT+KLQ QVNG+EWSWKNLN LCWAIGSISGAMHEEDEK
Sbjct: 280 KNMRETLVYLTHLDYIDTERIMTEKLQNQVNGSEWSWKNLNALCWAIGSISGAMHEEDEK 339

Query: 185 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 340 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 399

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48120807|ref|XP_396469.1| PREDICTED: exportin-1 [Apis mellifera]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 209/240 (87%), Gaps = 13/240 (5%)

Query: 7   DEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPI--MDLPNN 64
           +E    ALHYLVLISEV+EVEIFKICLEYWNAL+ DLYR +P++S      +  + LP  
Sbjct: 338 NELLLKALHYLVLISEVEEVEIFKICLEYWNALAMDLYRANPFVSPTPLFVVKNITLP-- 395

Query: 65  KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY 124
                    +RR FY PVLTK+RYIM+SRMAKPEEVLVVENENGEVVREFMKDTDSINLY
Sbjct: 396 ---------SRRLFYCPVLTKVRYIMISRMAKPEEVLVVENENGEVVREFMKDTDSINLY 446

Query: 125 KNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 184
           KNMRETLVYLTHL+Y DTE++MT+KLQ QVNG+EWSWKNLN LCWAIGSISGAMHEEDEK
Sbjct: 447 KNMRETLVYLTHLDYIDTERIMTEKLQNQVNGSEWSWKNLNALCWAIGSISGAMHEEDEK 506

Query: 185 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 507 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 566

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709138|ref|XP_003393170.1| PREDICTED: exportin-1-like [Bombus terrestris]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/240 (80%), Positives = 207/240 (86%), Gaps = 13/240 (5%)

Query: 7   DEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPI--MDLPNN 64
           +E    ALHYLVLISEV+EVEIFKICLEYWNAL+ DLYR +P+        +  M LP  
Sbjct: 338 NELLLKALHYLVLISEVEEVEIFKICLEYWNALAMDLYRANPFAPPTPLFMVKNMTLP-- 395

Query: 65  KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY 124
                    +RR FY PVLTK+RYIM+SRMAKPEEVLVVENENGEVVREFMKDTDSINLY
Sbjct: 396 ---------SRRLFYCPVLTKVRYIMISRMAKPEEVLVVENENGEVVREFMKDTDSINLY 446

Query: 125 KNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 184
           KNMRETLVYLTHL+Y DTE++MT+KLQ QVNGTEWSWKNLN LCWAIGSISGAMHEEDEK
Sbjct: 447 KNMRETLVYLTHLDYMDTERIMTEKLQNQVNGTEWSWKNLNALCWAIGSISGAMHEEDEK 506

Query: 185 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 507 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 566

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543308|ref|XP_001604619.1| PREDICTED: exportin-1-like [Nasonia vitripennis]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/232 (84%), Positives = 209/232 (90%), Gaps = 11/232 (4%)

Query: 13  ALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEA 72
           ALHYLVLISEV+EVEIFKICLEYWN L+SDLYRE+P++      PI+    NK+  +   
Sbjct: 344 ALHYLVLISEVEEVEIFKICLEYWNGLASDLYRENPFVP-----PILI---NKNIAVP-- 393

Query: 73  VARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLV 132
             RR FY  VLTK+RYIM+SRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLV
Sbjct: 394 -PRRLFYTQVLTKVRYIMISRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLV 452

Query: 133 YLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 192
           YLTHL+Y DTE+VMT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK
Sbjct: 453 YLTHLDYVDTERVMTEKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 512

Query: 193 DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 513 DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 564

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413068|ref|XP_003489867.1| PREDICTED: exportin-1-like [Bombus impatiens]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/234 (82%), Positives = 205/234 (87%), Gaps = 13/234 (5%)

Query: 13  ALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPI--MDLPNNKSHTMD 70
           ALHYLVLISEV+EVEIFKICLEYWNAL+ DLYR +P+        +  M LP        
Sbjct: 344 ALHYLVLISEVEEVEIFKICLEYWNALAMDLYRANPFAPPTPLFMVKNMTLP-------- 395

Query: 71  EAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRET 130
              +RR FY PVLTK+RYIM+SRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRET
Sbjct: 396 ---SRRLFYCPVLTKVRYIMISRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRET 452

Query: 131 LVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV 190
           LVYLTHL+Y DTE++MT+KLQ QVNGTEWSWKNLN LCWAIGSISGAMHEEDEKRFLVTV
Sbjct: 453 LVYLTHLDYMDTERIMTEKLQNQVNGTEWSWKNLNALCWAIGSISGAMHEEDEKRFLVTV 512

Query: 191 IKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           IKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 513 IKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 566

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260830375|ref|XP_002610136.1| hypothetical protein BRAFLDRAFT_264300 [Branchiostoma floridae] gi|229295500|gb|EEN66146.1| hypothetical protein BRAFLDRAFT_264300 [Branchiostoma floridae]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/232 (81%), Positives = 204/232 (87%), Gaps = 7/232 (3%)

Query: 13  ALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEA 72
           ALHYLVLISEVDE+EIFKICLEYWN L++DLYRESP+ S+ S L +            E 
Sbjct: 347 ALHYLVLISEVDEIEIFKICLEYWNTLAADLYRESPFSSTTSPLLL-------GGQQPEV 399

Query: 73  VARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLV 132
             RRQ Y  VL+K+R +MVSRMAKPEEVLVVENE GEVVREFMKDTDSINLYKNMRETLV
Sbjct: 400 PLRRQLYLQVLSKVRLVMVSRMAKPEEVLVVENEQGEVVREFMKDTDSINLYKNMRETLV 459

Query: 133 YLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 192
           YLTHL+Y DTE++MT+KL +QV+GTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV VIK
Sbjct: 460 YLTHLDYADTERIMTEKLHKQVDGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVAVIK 519

Query: 193 DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           DLLGLCEQK+GKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 520 DLLGLCEQKRGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 571

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156392524|ref|XP_001636098.1| predicted protein [Nematostella vectensis] gi|156223198|gb|EDO44035.1| predicted protein [Nematostella vectensis]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/234 (79%), Positives = 206/234 (88%), Gaps = 8/234 (3%)

Query: 11  TTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMD 70
           T ALHYLVLISEV+E EIFKICLEYWN L+SDLYRE+P+ S++S  P++   N       
Sbjct: 352 TQALHYLVLISEVEETEIFKICLEYWNTLASDLYRENPFSSTSS--PLLIAQNQ------ 403

Query: 71  EAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRET 130
           +   RRQ Y  VL+KIR IM+SRMAKPEEVLVVEN+ GEVVREFMKDTD+INLYKNMRET
Sbjct: 404 QVPPRRQLYLSVLSKIRVIMISRMAKPEEVLVVENDQGEVVREFMKDTDAINLYKNMRET 463

Query: 131 LVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV 190
           LVYLTHL+Y DTE++MT+KLQ QVNG EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV
Sbjct: 464 LVYLTHLDYQDTERIMTEKLQNQVNGIEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV 523

Query: 191 IKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           IKDLLGLCE K+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 524 IKDLLGLCEIKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 577

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|395829712|ref|XP_003787990.1| PREDICTED: exportin-1 isoform 1 [Otolemur garnettii] gi|395829714|ref|XP_003787991.1| PREDICTED: exportin-1 isoform 2 [Otolemur garnettii]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/237 (78%), Positives = 209/237 (88%), Gaps = 7/237 (2%)

Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct: 345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 399

Query: 68  TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNM 127
              E   RRQ Y PVL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINLYKNM
Sbjct: 400 F--EVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
           RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct: 458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350582355|ref|XP_003354851.2| PREDICTED: exportin-1 [Sus scrofa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/237 (78%), Positives = 209/237 (88%), Gaps = 7/237 (2%)

Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++    + S 
Sbjct: 280 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL----SGSQ 333

Query: 68  TMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNM 127
             D    RRQ Y PVL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINLYKNM
Sbjct: 334 HFD-VPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 392

Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
           RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct: 393 RETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 452

Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 453 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 509

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
UNIPROTKB|F1NVE5	1071	XPO1 "Uncharacterized protein"	0.923	0.214	0.734	5.7e-91
UNIPROTKB|E1BE98	1071	XPO1 "Uncharacterized protein"	0.923	0.214	0.734	5.7e-91
UNIPROTKB|E2R9K4	1071	XPO1 "Uncharacterized protein"	0.923	0.214	0.734	5.7e-91
UNIPROTKB|I3LLS7	971	XPO1 "Uncharacterized protein"	0.923	0.236	0.734	5.7e-91
UNIPROTKB|Q9PW90	1071	Q9PW90 "CRM1/XPO1 protein" [Xe	0.923	0.214	0.734	5.7e-91
ZFIN|ZDB-GENE-070530-6	1074	xpo1b "exportin 1 (CRM1 homolo	0.923	0.214	0.729	1.5e-90
UNIPROTKB|O14980	1071	XPO1 "Exportin-1" [Homo sapien	0.923	0.214	0.729	2.5e-90
MGI|MGI:2144013	1071	Xpo1 "exportin 1, CRM1 homolog	0.903	0.210	0.745	6.5e-90
RGD|620517	1071	Xpo1 "exportin 1, CRM1 homolog	0.903	0.210	0.745	6.5e-90
ZFIN|ZDB-GENE-050309-201	1056	xpo1a "exportin 1 (CRM1 homolo	0.923	0.217	0.721	1.1e-89

UNIPROTKB|F1NVE5 XPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 174/237 (73%), Positives = 196/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct:   345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 399

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   400 F--DVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   458 RETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|E1BE98 XPO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 174/237 (73%), Positives = 196/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct:   345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 399

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   400 F--DVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0005642 "annulate lamellae" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E2R9K4 XPO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 174/237 (73%), Positives = 196/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct:   345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 399

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   400 F--DVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|I3LLS7 XPO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 174/237 (73%), Positives = 196/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct:   245 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 299

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   300 F--DVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 357

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   358 RETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 417

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   418 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 474

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0005642 "annulate lamellae" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|Q9PW90 Q9PW90 "CRM1/XPO1 protein" [Xenopus laevis (taxid:8355)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 174/237 (73%), Positives = 196/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct:   345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 399

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   400 F--DVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   458 RETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-070530-6 xpo1b "exportin 1 (CRM1 homolog, yeast) b" [Danio rerio (taxid:7955)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 173/237 (72%), Positives = 195/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +S S  P++   +   H
Sbjct:   347 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSTS--PLL---SGSQH 401

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   402 F--DVPPRRQLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 459

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   460 RETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 519

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 576

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|O14980 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 173/237 (72%), Positives = 195/237 (82%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H
Sbjct:   345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQH 399

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RRQ Y P+L K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   400 F--DVPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0005643 "nuclear pore" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005642 "annulate lamellae" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005215 "transporter activity" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

MGI|MGI:2144013 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 173/232 (74%), Positives = 194/232 (83%)

Query:    13 ALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEA 72
             ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H   + 
Sbjct:   350 ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQHF--DI 402

Query:    73 VARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNMRETLV 132
               RRQ Y  VL+K+R +MVSRMAKP              REFMKDTDSINLYKNMRETLV
Sbjct:   403 PPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLV 462

Query:   133 YLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 192
             YLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK
Sbjct:   463 YLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 522

Query:   193 DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             DLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   523 DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000776 "kinetochore" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005642 "annulate lamellae" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=ISO;IMP;IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IDA

GO:0010824 "regulation of centrosome duplication" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0034504 "protein localization to nucleus" evidence=IMP

GO:0042176 "regulation of protein catabolic process" evidence=IMP

GO:0046825 "regulation of protein export from nucleus" evidence=IMP

GO:0051028 "mRNA transport" evidence=IEA

RGD|620517 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 173/232 (74%), Positives = 194/232 (83%)

Query:    13 ALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEA 72
             ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++   +   H   + 
Sbjct:   350 ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL---SGSQHF--DI 402

Query:    73 VARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNMRETLV 132
               RRQ Y  VL+K+R +MVSRMAKP              REFMKDTDSINLYKNMRETLV
Sbjct:   403 PPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLV 462

Query:   133 YLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 192
             YLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK
Sbjct:   463 YLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIK 522

Query:   193 DLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             DLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   523 DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000776 "kinetochore" evidence=ISO;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005642 "annulate lamellae" evidence=IEA;ISO

GO:0005643 "nuclear pore" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=ISO;IDA

GO:0008565 "protein transporter activity" evidence=IEA;ISO

GO:0010824 "regulation of centrosome duplication" evidence=IEA;ISO

GO:0015030 "Cajal body" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030529 "ribonucleoprotein complex" evidence=IEA;ISO

GO:0034504 "protein localization to nucleus" evidence=IEA;ISO

GO:0042176 "regulation of protein catabolic process" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0046825 "regulation of protein export from nucleus" evidence=IEA;ISO

GO:0051028 "mRNA transport" evidence=IEA

ZFIN|ZDB-GENE-050309-201 xpo1a "exportin 1 (CRM1 homolog, yeast) a" [Danio rerio (taxid:7955)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 171/237 (72%), Positives = 194/237 (81%)

Query:     8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
             E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +S S  P++   +   H
Sbjct:   345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSTS--PLL---STSQH 399

Query:    68 TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
                +   RR  Y PVL+K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct:   400 F--DVPPRRHLYLPVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457

Query:   128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
             RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSW+NLNTLCWAIGSISGAMHEEDEKRFL
Sbjct:   458 RETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWRNLNTLCWAIGSISGAMHEEDEKRFL 517

Query:   188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct:   518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14068	XPO1_SCHPO	No assigned EC number	0.6178	0.9638	0.2226	yes	N/A
Q54EV7	XPO1_DICDI	No assigned EC number	0.5889	0.8875	0.2090	yes	N/A
Q9TVM2	XPO1_DROME	No assigned EC number	0.7383	0.9076	0.2126	yes	N/A
O14980	XPO1_HUMAN	No assigned EC number	0.7848	0.9236	0.2147	yes	N/A
Q80U96	XPO1_RAT	No assigned EC number	0.7759	0.9076	0.2110	yes	N/A
P30822	XPO1_YEAST	No assigned EC number	0.5156	0.9678	0.2223	yes	N/A
Q6P5F9	XPO1_MOUSE	No assigned EC number	0.7759	0.9076	0.2110	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	249
COG5101	1053	COG5101, CRM1, Importin beta-related nuclear trans	1e-102

>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

 Score =  319 bits (819), Expect = e-102
 Identities = 142/250 (56%), Positives = 177/250 (70%), Gaps = 6/250 (2%)

Query: 1   MSALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMD 60
           + A E  E    A  YL+ IS ++E EIFK  LEYWN L +DLY E   + +    P++ 
Sbjct: 331 LEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQ 390

Query: 61  LPNNKS------HTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREF 114
           L           +       R+  Y  +L+++R +++  M +PEEVL+VEN+ GE+VREF
Sbjct: 391 LSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREF 450

Query: 115 MKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSI 174
           +K+TD+I LYK+MRE LVYLTHL   DTE+ M  KL +Q++G EWSW NLNTLCWAIGSI
Sbjct: 451 VKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSI 510

Query: 175 SGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKT 234
           SGAM E +EKRF V VIKDLL LCE K+GKDNKA++ASNIMYVVGQYPRFL+AHW FLKT
Sbjct: 511 SGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKT 570

Query: 235 VVNKLFEFMH 244
           VV KLFEFMH
Sbjct: 571 VVKKLFEFMH 580

Length = 1053

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2020|consensus	1041		100.0
KOG2023|consensus	885		96.09
KOG2081|consensus	559		94.37
KOG2022|consensus	982		89.56

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=100.00  E-value=2.1e-94  Score=704.77  Aligned_cols=245  Identities=58%  Similarity=0.975  Sum_probs=223.9

Q ss_pred             chhhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-CccC---C---CCCCCccchhHHHH
Q psy4087           3 ALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGL-PIMD---L---PNNKSHTMDEAVAR   75 (249)
Q Consensus         3 ~~~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~-~~~~---~---~~~~~~~~~~~~~r   75 (249)
                      .+++++.++.||.||++||+|+++|+||+|+|||+.++.+||.|.+.-.. +.+ |++.   |   .+..+..++..|.|
T Consensus       333 ~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~-tem~Pli~ls~~s~~istnpn~~~~~pLr  411 (1053)
T COG5101         333 AREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPA-TEMSPLIQLSVGSQAISTNPNQDSTKPLR  411 (1053)
T ss_pred             ChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cccCcchhccccchhccCCcchhcccchH
Confidence            47788899999999999999999999999999999999999988752111 111 2221   1   00112333447899


Q ss_pred             HHhhHHHHHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhc
Q psy4087          76 RQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVN  155 (249)
Q Consensus        76 ~~~Y~~il~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~  155 (249)
                      ++.|.+|||+||.+||++|+|||||+||+||+||||||+++|||+|++||+|||+|+|||||+..||+.+|.+|+.+|++
T Consensus       412 khiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d  491 (1053)
T COG5101         412 KHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD  491 (1053)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHH
Q psy4087         156 GTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTV  235 (249)
Q Consensus       156 ~~~ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktV  235 (249)
                      |++|||++||+||||||||||||+|+.||||+|+|||+||+|||+|+|||||||||||||||||||||||++||+|||||
T Consensus       492 g~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTV  571 (1053)
T COG5101         492 GKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTV  571 (1053)
T ss_pred             CCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCC
Q psy4087         236 VNKLFEFMHGPSY  248 (249)
Q Consensus       236 v~KLfEFM~e~~~  248 (249)
                      |+||||||||.|.
T Consensus       572 v~KLFEFMhE~HE  584 (1053)
T COG5101         572 VKKLFEFMHEDHE  584 (1053)
T ss_pred             HHHHHHHHhhhhh
Confidence            9999999999994

>KOG2020|consensus

Probab=100.00  E-value=2.3e-60  Score=490.35  Aligned_cols=237  Identities=60%  Similarity=0.999  Sum_probs=218.3

Q ss_pred             hhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhh-CCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHH
Q psy4087           5 ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRE-SPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVL   83 (249)
Q Consensus         5 ~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il   83 (249)
                      ..++.+..|+.|++.+|.+++.|+||+|+|||+.+++++|.+ .|+-+.+..+|..       .++.+.+.|+..|..++
T Consensus       327 ~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~-------~~~~ri~~rk~~y~~~~  399 (1041)
T KOG2020|consen  327 SQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSI-------SDYSRIDFRKSIYQEFL  399 (1041)
T ss_pred             hhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccccccccccccccc-------cchhccchHHHHHHHHH
Confidence            346788899999999999999999999999999999999986 2221111111111       11344678999999999


Q ss_pred             HHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCccc
Q psy4087          84 TKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKN  163 (249)
Q Consensus        84 ~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~  163 (249)
                      +++|.+++.+|+||+||+|++|+.|++|||.++|++.+.+|+.||++++|++|||..||+.+|.++++.+++|.+|+|++
T Consensus       400 ~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~~~~~~~~  479 (1041)
T KOG2020|consen  400 SKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDGDEWSLHN  479 (1041)
T ss_pred             HHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhh
Q psy4087         164 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM  243 (249)
Q Consensus       164 lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM  243 (249)
                      +|++|||||||||+|.|+.|++|++.+++|+|++||.++||+|||+|||||||+|||||||+++||+|||||++||||||
T Consensus       480 ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lkt~~~~L~efm  559 (1041)
T KOG2020|consen  480 LNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVHKLFEFM  559 (1041)
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q psy4087         244 HGPSY  248 (249)
Q Consensus       244 ~e~~~  248 (249)
                      ||+|.
T Consensus       560 he~h~  564 (1041)
T KOG2020|consen  560 HETHE  564 (1041)
T ss_pred             hhhhH
Confidence            99996

>KOG2023|consensus

Probab=96.09  E-value=0.061  Score=55.50  Aligned_cols=193  Identities=23%  Similarity=0.398  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHH
Q psy4087           9 WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRY   88 (249)
Q Consensus         9 ~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~   88 (249)
                      -|-...+||++..+=.|++|=--+.|||..++.+     |.                         -+..-.|.|.+|..
T Consensus       253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeq-----pi-------------------------~~~~L~p~l~kliP  302 (885)
T KOG2023|consen  253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-----PI-------------------------CKEVLQPYLDKLIP  302 (885)
T ss_pred             chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-----cC-------------------------cHHHHHHHHHHHHH
Confidence            3456789999999889999999999999987742     21                         12344788999999


Q ss_pred             HHHhhcCCCceEEEe-e-cCCCchh--hhh---------------------------hcchhhH---HHHHHHHHHHHHH
Q psy4087          89 IMVSRMAKPEEVLVV-E-NENGEVV--REF---------------------------MKDTDSI---NLYKNMRETLVYL  134 (249)
Q Consensus        89 v~I~~M~kPeEVlIv-e-~e~Geiv--re~---------------------------~~dtd~i---~lYk~mretLvyL  134 (249)
                      ++++.|+=-++=++. + +|+.+-|  ||.                           ..|.|..   +|=|.--.+|--|
T Consensus       303 vLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL  382 (885)
T KOG2023|consen  303 VLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL  382 (885)
T ss_pred             HHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH
Confidence            999999987765442 2 3443222  110                           1122222   3445556789999


Q ss_pred             hcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhc-cCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhc
Q psy4087         135 THLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASN  213 (249)
Q Consensus       135 t~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSIS-Gam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASn  213 (249)
                      ++.-.++...++...|...+...+|-...  +=.-|.|||+ |+|.-  =-..|...|-.|+.+-..|     ||.|-|=
T Consensus       383 anvf~~elL~~l~PlLk~~L~~~~W~vrE--agvLAlGAIAEGcM~g--~~p~LpeLip~l~~~L~DK-----kplVRsI  453 (885)
T KOG2023|consen  383 ANVFGDELLPILLPLLKEHLSSEEWKVRE--AGVLALGAIAEGCMQG--FVPHLPELIPFLLSLLDDK-----KPLVRSI  453 (885)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCcchhhhhh--hhHHHHHHHHHHHhhh--cccchHHHHHHHHHHhccC-----ccceeee
Confidence            99999999999999999988777776654  3456899998 77742  2233455677777777644     8999999


Q ss_pred             ceeeeccchHhHH--hhHHHHHHHHHHHH
Q psy4087         214 IMYVVGQYPRFLR--AHWKFLKTVVNKLF  240 (249)
Q Consensus       214 IMYvvgQYpRFLk--~~w~fLktVv~KLf  240 (249)
                      -..-.|+|..+.-  .+.+||+-|+.-|.
T Consensus       454 TCWTLsRys~wv~~~~~~~~f~pvL~~ll  482 (885)
T KOG2023|consen  454 TCWTLSRYSKWVVQDSRDEYFKPVLEGLL  482 (885)
T ss_pred             eeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence            9999999988776  35578888876654

>KOG2081|consensus

Probab=94.37  E-value=1  Score=45.60  Aligned_cols=189  Identities=15%  Similarity=0.328  Sum_probs=134.7

Q ss_pred             HHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHH
Q psy4087          12 TALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMV   91 (249)
Q Consensus        12 ~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I   91 (249)
                      ...+-|+....=+|.|+-+..+-||+.+...+|...                        ...-+..|+|+..++-..+.
T Consensus       291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~------------------------~~~~~~~frpy~~rLvs~l~  346 (559)
T KOG2081|consen  291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTD------------------------DDEALGIFRPYFLRLVSLLK  346 (559)
T ss_pred             hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccc------------------------cHHHHHHhHHHHHHHHHHHH
Confidence            445556677777888999999999999999888431                        12346689999999999999


Q ss_pred             hhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHhhcCCCCCcccchhHHHh
Q psy4087          92 SRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNY-TDTEQVMTQKLQQQVNGTEWSWKNLNTLCWA  170 (249)
Q Consensus        92 ~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~-~dt~~im~ekL~~q~~~~~ws~~~lN~LCWA  170 (249)
                      .+-.=|+...-.-+|+.+          --.+=-.+-+.|.=.+++-- +.+.++|..++..  +  .=+|.--..--..
T Consensus       347 ~h~qlp~~~~~l~Ee~~~----------f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~--~~~We~~EAaLF~  412 (559)
T KOG2081|consen  347 RHVQLPPDQFDLPEEESE----------FFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--N--NASWEEVEAALFI  412 (559)
T ss_pred             HHccCCCccccCccchhH----------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--C--CCchHHHHHHHHH
Confidence            999988843221111111          11122334455555566544 4667777777765  3  3355555566667


Q ss_pred             hhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhhcCC
Q psy4087         171 IGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGP  246 (249)
Q Consensus       171 IGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM~e~  246 (249)
                      +-++++..+ ..|+.-+..|++-+.+|-|+..      +++..+ -++|.||..+..|..+|.-|.+=++.+|..+
T Consensus       413 l~~~~~~~~-~~e~~i~pevl~~i~nlp~Q~~------~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~  480 (559)
T KOG2081|consen  413 LRAVAKNVS-PEENTIMPEVLKLICNLPEQAP------LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLK  480 (559)
T ss_pred             HHHHhccCC-ccccchHHHHHHHHhCCccchh------HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhc
Confidence            778888887 4688899999999999988764      333332 3789999999999999999999999888654

>KOG2022|consensus

Probab=89.56  E-value=2  Score=45.76  Aligned_cols=201  Identities=15%  Similarity=0.256  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHhhcCcCch----hHH-HHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhH-HH
Q psy4087           9 WFTTALHYLVLISEVDEV----EIF-KICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYA-PV   82 (249)
Q Consensus         9 ~l~~~l~~lv~iS~i~d~----EiF-kicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~-~i   82 (249)
                      ..++-.+.|..+.+++-.    |.+ -..++||..+-.+++....-.                     .+.....|. +|
T Consensus       348 ~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~---------------------~~~~~~i~~~qI  406 (982)
T KOG2022|consen  348 LVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINET---------------------QQIKKQILSQQI  406 (982)
T ss_pred             HHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhcc---------------------CCcchhHHHHHH
Confidence            344445556666666432    444 357999999998877443211                     011344555 77


Q ss_pred             HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHhhc---CCC
Q psy4087          83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY-KNMRETLVYLTHLNYTDTEQVMTQKLQQQVN---GTE  158 (249)
Q Consensus        83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lY-k~mretLvyLt~Ld~~dt~~im~ekL~~q~~---~~~  158 (249)
                      .-+|-.+.+.||+-|-+=.+..   |.     ..+-|+-+-| +..-+++-|.=++--+.+-..+.++|.+.+.   ++.
T Consensus       407 y~qlvei~l~K~~~Ps~e~~~~---W~-----S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p  478 (982)
T KOG2022|consen  407 YAQLVEILLKKLALPSKEIWLS---WS-----SDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDP  478 (982)
T ss_pred             HHHHHHHHHHHhcCCCHHHhcc---CC-----cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Confidence            7789999999999997543322   11     1112222333 3344667777777667778888888887653   445


Q ss_pred             CCcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhh-hhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHH
Q psy4087         159 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC-EQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVN  237 (249)
Q Consensus       159 ws~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~Lc-E~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~  237 (249)
                      -+|+..-+.|+.+-||+-.+.+ .|++-    |..|+..| +.+-++- +.=.++--|..+|-|--||..|.-.|--++.
T Consensus       479 ~s~~~tEaci~~~~sva~~~~~-t~~~~----i~rl~~~~asik~S~~-n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~  552 (982)
T KOG2022|consen  479 DSLNRTEACIFQFQSVAEYLGE-TESTW----IPRLFETSASIKLSAP-NPQLLSTSSDLIGSLSNWLGEHPMYLNPSLP  552 (982)
T ss_pred             hHHHHHHHHHHHHHHHHhhcCc-chhHH----HHHHHHhccccccccC-ChhHHHHHHHHHHHHHHHHhcCCcccCchHH
Confidence            6778888899999999999985 44444    44555444 3334443 5556777889999999999999999999999


Q ss_pred             HHHhhhc
Q psy4087         238 KLFEFMH  244 (249)
Q Consensus       238 KLfEFM~  244 (249)
                      -||.=.|
T Consensus       553 ~L~~~Lh  559 (982)
T KOG2022|consen  553 LLFQGLH  559 (982)
T ss_pred             HHHHHhc
Confidence            8887655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
3gb8_A	1071	Crystal Structure Of Crm1SNURPORTIN-1 Complex Lengt		1e-100
3gjx_A	1073	Crystal Structure Of The Nuclear Export Complex Crm		1e-100
4fgv_A	1086	Crystal Structure Of Free Crm1 (crystal Form 1) Len		2e-74
4hb4_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		1e-67
4gpt_C	1060	Crystal Structure Of Kpt251 In Complex With Crm1-ra		5e-67
4hat_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-65
4hb2_C	1023	Crystal Structure Of Crm1-ran-ranbp1 Length = 1023		3e-65
4hax_C	1023	Crystal Structure Of Crm1 Inhibitor Ratjadone A In		1e-64
4haw_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		1e-64
4hay_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		2e-64
4haz_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		4e-64
3m1i_C	1049	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-64
3vyc_A	1033	Crystal Structure Of Unliganded Saccharomyces Cerev		5e-64
4hb3_C	1023	Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked		5e-64
4hb0_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		7e-64
2l1l_B	127	Nmr Solution Structure Of The Phi0 Pki Nes Peptide		4e-37

>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex Length = 1071

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/237 (73%), Positives = 195/237 (82%), Gaps = 7/237 (2%)
Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSH 67
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS  P++    + S 
Sbjct: 345 ETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLL----SGSQ 398
Query: 68  TMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINLYKNM 127
             D    RRQ Y P+L K+R +MVSRMAKP              REFMKDTDSINLYKNM
Sbjct: 399 HFD-VPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNM 457
Query: 128 RETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 187
           RETLVYLTHL+Y DTE++MT+KL  QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL
Sbjct: 458 RETLVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 517
Query: 188 VTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           VTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 518 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574

>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1- Snurportin1-Rangtp Length = 1073

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/241 (72%), Positives = 193/241 (80%), Gaps = 15/241 (6%)
Query: 8   EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSAS----GLPIMDLPN 63
           E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS    G    D+P 
Sbjct: 347 EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIP- 405
Query: 64  NKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTDSINL 123
                      RRQ Y  VL+K+R +MVSRMAKP              REFMKDTDSINL
Sbjct: 406 ----------PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINL 455
Query: 124 YKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 183
           YKNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDE
Sbjct: 456 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 515
Query: 184 KRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM 243
           KRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFM
Sbjct: 516 KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 575
Query: 244 H 244
           H
Sbjct: 576 H 576

>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1) Length = 1086

Iteration: 1
 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 172/254 (67%), Gaps = 21/254 (8%)
Query: 4   LESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDL-- 61
           L + ++ T    YL+ IS++D+ EIFKICL+YW  L  +LY E         LP+ D+  
Sbjct: 335 LPNRDFLTHGHFYLIRISQIDDREIFKICLDYWLKLVQELYEE------MQSLPLNDMSS 388
Query: 62  -----------PNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXX 110
                      PN     ++    R+  Y  VL+ +R +M+ +M +P             
Sbjct: 389 MGLGMMSGGGAPN--PALLEHYPLRKHKYKEVLSNLRVVMIEKMVRPEEVLIVENDEGEI 446
Query: 111 XREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWA 170
            REF+KDTDS+ LYK +RE LVYLTHL+  D EQ+MT+KL +QV+G+EWSW N N LCWA
Sbjct: 447 VREFVKDTDSVQLYKTIRECLVYLTHLDVVDMEQIMTEKLARQVDGSEWSWHNCNVLCWA 506
Query: 171 IGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWK 230
           IGSIS AM+EE EKRFLVTVIKDLLGL E K+GKDNKA++ASNIMY+VGQYPRFL+AHWK
Sbjct: 507 IGSISMAMNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQYPRFLKAHWK 566
Query: 231 FLKTVVNKLFEFMH 244
           FLKTVVNKLFEFMH
Sbjct: 567 FLKTVVNKLFEFMH 580

>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/245 (49%), Positives = 164/245 (66%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLLGLCEQK+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLGLCEQKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060

Iteration: 1
 Score =  250 bits (639), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/256 (47%), Positives = 170/256 (66%), Gaps = 15/256 (5%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E   + +    P++
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEVQRLPATEMSPLI 391
Query: 60  DLP------NNKSHTMDEAVARR-----QFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXX 108
            L       +  S  ++    +R       Y  + +++R +++  M +P           
Sbjct: 392 QLSVGSQAISTGSGALNPEYMKRFPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 451
Query: 109 XXXREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLC 168
              REF+K++D+I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL 
Sbjct: 452 EIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 511
Query: 169 WAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH 228
           WAIGSISG M E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AH
Sbjct: 512 WAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 571
Query: 229 WKFLKTVVNKLFEFMH 244
           W FL+TV+ KLFEFMH
Sbjct: 572 WNFLRTVILKLFEFMH 587

>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 1023

Iteration: 1
 Score =  244 bits (624), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 162/245 (66%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  244 bits (624), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 162/245 (66%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+  L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILAL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC +K+GKDN A++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNAAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  241 bits (616), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 162/245 (66%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC +K+GKDN+A++AS+IMYVVGQYPRFL+AHW FL+TV+ +L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKRGKDNEAVVASDIMYVVGQYPRFLKAHWNFLRTVILQL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  240 bits (613), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC +K GKDN+A++AS+IMYVVGQYPRFL+AHW FL+TV+ +L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVKKSGKDNEAVVASDIMYVVGQYPRFLKAHWNFLRTVILQL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049

Iteration: 1
 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL L  +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033

Iteration: 1
 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 330 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 378
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 379 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 423
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 424 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 483
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL L  +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 484 EDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 543
Query: 240 FEFMH 244
           FEFMH
Sbjct: 544 FEFMH 548

>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023

Iteration: 1
 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL L  +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KL
Sbjct: 486 EDTEKRFVVTVIKDLLDLSVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023

Iteration: 1
 Score =  240 bits (612), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 30/245 (12%)
Query: 4   LESDE----WFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIM 59
           LESDE        A  YL+ +S+++E E+FK  L+YW+ L +DL+ E          P+ 
Sbjct: 332 LESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------PL- 380
Query: 60  DLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPXXXXXXXXXXXXXXREFMKDTD 119
                          ++  Y  + +++R +++  M +P              REF+K++D
Sbjct: 381 ---------------KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425
Query: 120 SINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMH 179
           +I LYK+ RE LVYLTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M 
Sbjct: 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS 485
Query: 180 EEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
           E+ EKRF+VTVIKDLL LC Q+ G+DN+A++AS+IMYVVGQYPRFL+AHW FL+TV+ +L
Sbjct: 486 EDTEKRFVVTVIKDLLDLCVQQSGQDNQAVVASDIMYVVGQYPRFLKAHWNFLRTVILQL 545
Query: 240 FEFMH 244
           FEFMH
Sbjct: 546 FEFMH 550

>pdb|2L1L|B Chain B, Nmr Solution Structure Of The Phi0 Pki Nes Peptide In Complex With Crm1-Rangtp Length = 127

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/71 (97%), Positives = 71/71 (100%)
Query: 174 ISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLK 233
           ISGAMHEEDEKRFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLK
Sbjct: 1   ISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK 60
Query: 234 TVVNKLFEFMH 244
           TVVNKLFEFMH
Sbjct: 61  TVVNKLFEFMH 71
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	4e-72
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-57
2x19_B	963	Importin-13; nuclear transport, protein transport;	4e-33
2x1g_F	971	Cadmus; transport protein, developmental protein,	5e-30
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	4e-29
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073

 Score =  237 bits (605), Expect = 4e-72
 Identities = 185/243 (76%), Positives = 204/243 (83%), Gaps = 7/243 (2%)

Query: 5   ESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNN 64
              E    ALHY++L+SEV+E EIFKICLEYWN L+++LYRESP+ +SAS L       +
Sbjct: 344 NLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFD 403

Query: 65  KSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLY 124
                     RRQ Y  VL+K+R +MVSRMAKPEEVLVVEN+ GEVVREFMKDTDSINLY
Sbjct: 404 IPP-------RRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLY 456

Query: 125 KNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 184
           KNMRETLVYLTHL+Y DTE +MT+KLQ QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK
Sbjct: 457 KNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 516

Query: 185 RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
           RFLVTVIKDLLGLCEQK+GKDNKAIIASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMH
Sbjct: 517 RFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 576

Query: 245 GPS 247
              
Sbjct: 577 ETH 579

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049

 Score =  196 bits (498), Expect = 1e-57
 Identities = 122/234 (52%), Positives = 166/234 (70%), Gaps = 26/234 (11%)

Query: 14  LHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAV 73
             YL+ +S+++E E+FK  L+YW+ L +DL+ E                           
Sbjct: 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL------------------------- 380

Query: 74  ARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVY 133
            ++  Y  + +++R +++  M +PEEVLVVEN+ GE+VREF+K++D+I LYK+ RE LVY
Sbjct: 381 -KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439

Query: 134 LTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKD 193
           LTHLN  DTE++M  KL +Q++G+EWSW N+NTL WAIGSISG M E+ EKRF+VTVIKD
Sbjct: 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499

Query: 194 LLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHGPS 247
           LL L  +K+GKDNKA++AS+IMYVVGQYPRFL+AHW FL+TV+ KLFEFMH   
Sbjct: 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH 553

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963

 Score =  126 bits (316), Expect = 4e-33
 Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 46/256 (17%)

Query: 1   MSALESDEWFTTALHYLVLISEVD-----EVEIFKICLEYWNALSSDLYRESPYMSSASG 55
           +  +E  + F   ++ ++  + +            + L +W  L  D+        +   
Sbjct: 324 LDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAV-- 381

Query: 56  LPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKP--EEVLVVENENGEVVRE 113
                               +Q Y PV  ++  +++ +   P  EE     ++  E  R 
Sbjct: 382 -------------------YQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRI 422

Query: 114 FMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTE--WSWKNLNTLCWAI 171
           +  D         + +TL+Y+  +   +    +  KL + +  +E  +SW++   L +  
Sbjct: 423 YRVD---------ISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473

Query: 172 GSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKF 231
            SI+  +           V+  L+GL  +     +   +A  +M+ +G    +L  H   
Sbjct: 474 QSIAETIDVNYS-----DVVPGLIGLIPRIS--ISNVQLADTVMFTIGALSEWLADHPVM 526

Query: 232 LKTVVNKLFEFMHGPS 247
           + +V+  +   +  P 
Sbjct: 527 INSVLPLVLHALGNPE 542

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971

 Score =  117 bits (292), Expect = 5e-30
 Identities = 26/227 (11%), Positives = 75/227 (33%), Gaps = 35/227 (15%)

Query: 21  SEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYA 80
               E     + L +W  L  +++  S                             ++  
Sbjct: 362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK--------------------CWEYIK 401

Query: 81  PVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYT 140
           P+   +  I+V +  +P+E  + +  + ++              +++ +T +Y   +   
Sbjct: 402 PLYAHLTRILVRKSEQPDEKSLAKWSSDDLE-------CFRCYRQDISDTFMYCYDVLND 454

Query: 141 DTEQVMTQKLQQ---QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGL 197
              +++   L +    +      W  L    ++  S++     E EKR +  +++ L  +
Sbjct: 455 YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-EKRQIPRLMRVLAEI 513

Query: 198 CEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 244
             +         +    +  +G Y  +L  +  ++   +N L   ++
Sbjct: 514 PYE----KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN 556

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980

 Score =  114 bits (285), Expect = 4e-29
 Identities = 28/250 (11%), Positives = 68/250 (27%), Gaps = 41/250 (16%)

Query: 10  FTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTM 69
                 YL+     D  E       + + L   L +ES                      
Sbjct: 330 LYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL----------------- 372

Query: 70  DEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRE 129
                        L  +   ++ +M   E     ++ + E   EF        + K ++ 
Sbjct: 373 ------SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQ------EMRKKLKI 420

Query: 130 TLVYLTHLNYTDTEQVMTQKLQQQV-----NGTEWSWKNLNTLCWAIG----SISGAMHE 180
               +  ++ +     M   +   +        E SW+ +    +        + G    
Sbjct: 421 FQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAF 480

Query: 181 EDEKRFLVTVIKDLLG-LCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 239
            +E     TV+  +L  +   +  +    ++    M ++ +Y  F       +  ++   
Sbjct: 481 FNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYF 540

Query: 240 F--EFMHGPS 247
                +H  +
Sbjct: 541 VGPRGIHNTN 550

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204

 Score = 98.6 bits (244), Expect = 1e-23
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 13/252 (5%)

Query: 2   SALESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDL 61
           S +E+   F   L   +  +      +       W AL          +  A     +  
Sbjct: 341 SDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400

Query: 62  PNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSI 121
                  + +     +  +P     R+   S             + GEV+R   +     
Sbjct: 401 SMTN---LVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457

Query: 122 NLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAI------GSIS 175
           +           L+   + D   V +        G+  S  + + + W          I+
Sbjct: 458 SFQMAGEWLKYQLST--FLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVIT 515

Query: 176 GAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTV 235
                 + +   V    +LL +      KD   +I S ++  V     F+    +FL  V
Sbjct: 516 QMFRTLNREEIPVNDGIELLQMVLNFDTKDP--LILSCVLTNVSALFPFVTYRPEFLPQV 573

Query: 236 VNKLFEFMHGPS 247
            +KLF  +   +
Sbjct: 574 FSKLFSSVTFET 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 46/263 (17%)

Query: 25  EVEIFKICLEYWNALSSDLYRE----SPYMSSASGLPIMDLPN---NKSHTMDEAVAR-- 75
             E+  + L+Y +    DL RE    +P   S     I D      N  H   + +    
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 76  RQFYA---PVLTKIRYIMVSRMAK----PEEVLVV------ENENGEVVREFMKDTDSIN 122
                   P   +  +  +S        P  +L +      +++   VV +  K +    
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--- 416

Query: 123 LYKNMRETLVYLTHLNYTDT------EQVMTQKLQQQVNGTE-WSWKNL------NTLCW 169
           + K  +E+ + +    Y +       E  + + +    N  + +   +L           
Sbjct: 417 VEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 170 AIGS-ISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIAS----NIMYVVGQYPRF 224
            IG  +    H E    F   V  D     EQK   D+ A  AS    N +  +  Y  +
Sbjct: 476 HIGHHLKNIEHPERMTLF-RMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 225 LRAHWKFLKTVVNKLFEFMHGPS 247
           +  +    + +VN + +F+    
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIE 556

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.97
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.72
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.16
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.34
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.79
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.66
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	97.19
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.68
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.4
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	94.29

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=100.00  E-value=3.8e-63  Score=515.64  Aligned_cols=238  Identities=78%  Similarity=1.230  Sum_probs=220.6

Q ss_pred             hhhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHH
Q psy4087           4 LESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVL   83 (249)
Q Consensus         4 ~~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il   83 (249)
                      |+.++.+..||+||+++|.++|.|+||+|+|||+.|+.+||++.+++...+  |++.|+     .+++.+.|+..|.+++
T Consensus       343 p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~--~~~~~~-----~~~~~~~~~~~y~~i~  415 (1073)
T 3gjx_A          343 LNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSAS--PLLSGS-----QHFDIPPRRQLYLTVL  415 (1073)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCS--SCTTSS-----CCSCSCHHHHTTHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc-----ccccchhHHHHHHHHH
Confidence            566889999999999999999999999999999999999999876431111  332221     1233567999999999


Q ss_pred             HHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCccc
Q psy4087          84 TKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKN  163 (249)
Q Consensus        84 ~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~  163 (249)
                      ++||.+||+||+||+||+++|||+||++||+++|||++++||.||+||+||||+++++|+.+|.++|+++++|++|+|.+
T Consensus       416 ~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~  495 (1073)
T 3gjx_A          416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKN  495 (1073)
T ss_dssp             HHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred             HHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhh
Q psy4087         164 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM  243 (249)
Q Consensus       164 lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM  243 (249)
                      +|++|||+|||||+|.++.|++||++||+.|++|||.++||||||+|||+|||++|||||||++||+||++|++||||||
T Consensus       496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m  575 (1073)
T 3gjx_A          496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM  575 (1073)
T ss_dssp             HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q psy4087         244 HGPSY  248 (249)
Q Consensus       244 ~e~~~  248 (249)
                      ||+|.
T Consensus       576 ~~~~~  580 (1073)
T 3gjx_A          576 HETHD  580 (1073)
T ss_dssp             TCCST
T ss_pred             hcCCH
Confidence            99875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=100.00  E-value=3.7e-48  Score=401.06  Aligned_cols=218  Identities=58%  Similarity=1.054  Sum_probs=209.5

Q ss_pred             hhhHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHH
Q psy4087           4 LESDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVL   83 (249)
Q Consensus         4 ~~~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il   83 (249)
                      |+.++.+..+|+||+.++.++|.|+|++|+|||+.++.++|.+ +                         .|+..|.+++
T Consensus       336 ~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e-~-------------------------~~~~~~~~~~  389 (1023)
T 4hat_C          336 ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE-P-------------------------LKKHIYEEIC  389 (1023)
T ss_dssp             GGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS-T-------------------------TTGGGGHHHH
T ss_pred             cchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc-h-------------------------HHHHHHHHHH
Confidence            5668888899999999999999999999999999999999864 1                         1567899999


Q ss_pred             HHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCccc
Q psy4087          84 TKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKN  163 (249)
Q Consensus        84 ~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~  163 (249)
                      ++|+.++|+||++|+||+|++||+|+++||+++|+|+++.|+.||++|+|+|+++.+||..+|.++|.+++++++|+|..
T Consensus       390 ~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~  469 (1023)
T 4hat_C          390 SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHN  469 (1023)
T ss_dssp             HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHH
T ss_pred             HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             chhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhh
Q psy4087         164 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFM  243 (249)
Q Consensus       164 lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM  243 (249)
                      +++.|||+|||||++.++.|++|++++++.|++||+.++|||+|++||+++||++||||+|++.||+||++|+++||++|
T Consensus       470 ~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l  549 (1023)
T 4hat_C          470 INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM  549 (1023)
T ss_dssp             HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q psy4087         244 HGPS  247 (249)
Q Consensus       244 ~e~~  247 (249)
                      +++|
T Consensus       550 ~~~~  553 (1023)
T 4hat_C          550 HETH  553 (1023)
T ss_dssp             TCSC
T ss_pred             hcCC
Confidence            9876

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.97  E-value=1.8e-31  Score=272.96  Aligned_cols=216  Identities=58%  Similarity=1.049  Sum_probs=200.8

Q ss_pred             hHHHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHH
Q psy4087           6 SDEWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTK   85 (249)
Q Consensus         6 ~~~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~   85 (249)
                      ..+.+...+++|+.++..+|.++++.|++||..++.++|.. +                         .+...|.+++.+
T Consensus       338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~-~-------------------------~~~~~~~~~l~~  391 (1049)
T 3m1i_C          338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE-P-------------------------LKKHIYEEICSQ  391 (1049)
T ss_dssp             GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS-T-------------------------TCGGGGHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc-h-------------------------hHHHHHHHHHHH
Confidence            45567778999999999999999999999999999987651 1                         023467899999


Q ss_pred             HHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccch
Q psy4087          86 IRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLN  165 (249)
Q Consensus        86 lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN  165 (249)
                      |..+++.+|..|+|+...+||+||.+|++.+|+|+.+.|+.++++|.+|+++.++++..++.+.+.+.++++.|+|...+
T Consensus       392 Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~e  471 (1049)
T 3m1i_C          392 LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNIN  471 (1049)
T ss_dssp             HHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred             HHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence            99999999999999888889999999999999999999999999999999999999999999999999988899999999


Q ss_pred             hHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHHhhhcC
Q psy4087         166 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHG  245 (249)
Q Consensus       166 ~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLfEFM~e  245 (249)
                      +.|||+|||||++.++.|++|+..|++.|+++|+.+.|+++++++++.+||++|||++|++.||++|.+|+++||++|++
T Consensus       472 aal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~  551 (1049)
T 3m1i_C          472 TLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE  551 (1049)
T ss_dssp             HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy4087         246 PS  247 (249)
Q Consensus       246 ~~  247 (249)
                      ++
T Consensus       552 ~~  553 (1049)
T 3m1i_C          552 TH  553 (1049)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.72  E-value=4.9e-18  Score=170.05  Aligned_cols=202  Identities=14%  Similarity=0.300  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHhhcCc-----CchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHH
Q psy4087           8 EWFTTALHYLVLISEV-----DEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPV   82 (249)
Q Consensus         8 ~~l~~~l~~lv~iS~i-----~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~i   82 (249)
                      +.+...+++|+.++..     .|.++...|++||..++.+++.- +   .                 ...+.....|.++
T Consensus       331 ~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~-~---~-----------------~~~~~~~~~~~~~  389 (963)
T 2x19_B          331 QSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSF-E---A-----------------EKQAVYQQVYRPV  389 (963)
T ss_dssp             HHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTS-C---H-----------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhh-h---h-----------------hhhHHHHHHHHHH
Confidence            4566778899988875     46789999999999999865421 0   0                 0124567889999


Q ss_pred             HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhh-HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcC--CCC
Q psy4087          83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDS-INLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNG--TEW  159 (249)
Q Consensus        83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~-i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~--~~w  159 (249)
                      +.+|..+++.+|.+|++.-. ++.+.    +   |.+. -+.-+.+.++|..++++.++++...+.+.+...++.  ..-
T Consensus       390 l~~l~~~ll~~~~~p~~~~~-~~~~~----d---e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~  461 (963)
T 2x19_B          390 YFQLVDVLLHKAQFPSDEEY-GFWSS----D---EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPY  461 (963)
T ss_dssp             HHHHHHHHHHHHSCCCHHHH-HTSCH----H---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHHHHHHHHcCCCcccc-cCCCh----h---HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999987521 11000    0   1111 133467889999999999999999999999887721  124


Q ss_pred             CcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHH
Q psy4087         160 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL  239 (249)
Q Consensus       160 s~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KL  239 (249)
                      +|......|||+|+|++.+.+ .+++++.+++..|+++++     ++++ |.+.+++++|||++|+..|+++|.+|+++|
T Consensus       462 ~w~~~eaal~al~~i~~~~~~-~~~~~l~~l~~~l~~l~~-----~~~~-vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l  534 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDV-NYSDVVPGLIGLIPRISI-----SNVQ-LADTVMFTIGALSEWLADHPVMINSVLPLV  534 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCS-SCCSHHHHHHHHGGGSCC-----CSHH-HHHHHHHHHHHTHHHHHHCHHHHTTTHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHhCCC-----CcHH-HHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            789999999999999999876 568899999998888887     3455 899999999999999999999999999999


Q ss_pred             HhhhcC
Q psy4087         240 FEFMHG  245 (249)
Q Consensus       240 fEFM~e  245 (249)
                      |++|++
T Consensus       535 ~~~l~~  540 (963)
T 2x19_B          535 LHALGN  540 (963)
T ss_dssp             HHHTTC
T ss_pred             HHHhCC
Confidence            999975

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.16  E-value=3.6e-10  Score=113.85  Aligned_cols=205  Identities=12%  Similarity=0.215  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHhhcCc-----CchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHH
Q psy4087           8 EWFTTALHYLVLISEV-----DEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPV   82 (249)
Q Consensus         8 ~~l~~~l~~lv~iS~i-----~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~i   82 (249)
                      +.+...++.|+.++..     +|.++...|++||..++.+..... ...                   ....+...|.++
T Consensus       344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~-~~~-------------------~~~~~~~~~~~~  403 (971)
T 2x1g_F          344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS-NDE-------------------QKHKCWEYIKPL  403 (971)
T ss_dssp             HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc-ccc-------------------chHHHHHHHHHH
Confidence            4566677788887643     588999999999999987654211 000                   012356778999


Q ss_pred             HHHHHHHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcC---CCC
Q psy4087          83 LTKIRYIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNG---TEW  159 (249)
Q Consensus        83 l~~lr~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~---~~w  159 (249)
                      +.+|..+++.+|..|++.   +.++++.-  .  +.+--+.-+.+.++|..++++.++++...+.+.+...+..   ...
T Consensus       404 ~~~ll~~l~~~~~~p~~~---~~~~~d~~--e--~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~  476 (971)
T 2x1g_F          404 YAHLTRILVRKSEQPDEK---SLAKWSSD--D--LECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPT  476 (971)
T ss_dssp             HHHHHHHHHHHTSCCCTT---TTSCSCHH--H--HHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCCCcc---cccccCHh--H--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999999999999753   11223211  0  1122234467888999999999988888888877765431   237


Q ss_pred             CcccchhHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHH
Q psy4087         160 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKL  239 (249)
Q Consensus       160 s~~~lN~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KL  239 (249)
                      +|......++|+|+|+..+.++. +..+..++.-|..|+..    |....|....++++|+|..|+..|+++|.+|+..|
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-~~~l~~l~~~l~~l~~~----d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l  551 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-KRQIPRLMRVLAEIPYE----KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLL  551 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTT----TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHhcCcc----ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            89999999999999998887644 57888888866666641    33577899999999999999999999999999999


Q ss_pred             Hhhhc
Q psy4087         240 FEFMH  244 (249)
Q Consensus       240 fEFM~  244 (249)
                      +..|+
T Consensus       552 ~~~l~  556 (971)
T 2x1g_F          552 VRGLN  556 (971)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99873

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.34  E-value=1.6e-06  Score=89.70  Aligned_cols=211  Identities=10%  Similarity=0.116  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHH
Q psy4087           8 EWFTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIR   87 (249)
Q Consensus         8 ~~l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr   87 (249)
                      +.+..-++++++...-++.|+...+++||..++..+-.....    .  +                 -...|.+++.+|-
T Consensus       328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~----~--~-----------------~~~~~~~~l~~Ll  384 (980)
T 3ibv_A          328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS----K--E-----------------LSASLKEFLKSLL  384 (980)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS----C--C-----------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc----c--c-----------------ccHHHHHHHHHHH
Confidence            455567888888888899999999999999988754322110    0  0                 0124789999999


Q ss_pred             HHHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHH----HHHHHHHHhhc-CCCCCcc
Q psy4087          88 YIMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQ----VMTQKLQQQVN-GTEWSWK  162 (249)
Q Consensus        88 ~v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~----im~ekL~~q~~-~~~ws~~  162 (249)
                      .+++.||.-|++--  .+++|+    .-.+.+-.++=+.++..+--++.++++.+..    .+...+++.+. ++.-+|.
T Consensus       385 ~~li~k~~yp~d~~--~~~~~d----~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~  458 (980)
T 3ibv_A          385 EAIIKKMKYDESQE--WDDDPD----SEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQ  458 (980)
T ss_dssp             HHHHHTTSCCTTCC--CCCCSS----SSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHccCCCccc--cccccc----hhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence            99999999998731  111111    0011122234466774444566778888788    45544444332 2345789


Q ss_pred             cchhHHHhhhhhccCCChh-----hhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHH
Q psy4087         163 NLNTLCWAIGSISGAMHEE-----DEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVN  237 (249)
Q Consensus       163 ~lN~LCWAIGSISGam~ee-----~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~  237 (249)
                      .+-.--.|+|+++=++...     .+..-+..++.-|..|.+..-..+....|..-.+.++|+|.+|+..|.++|..|++
T Consensus       459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~  538 (980)
T 3ibv_A          459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIE  538 (980)
T ss_dssp             HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence            9999999999999887652     23444555666666666655666778889999999999999999999999999999


Q ss_pred             HHHh--hhcCCC
Q psy4087         238 KLFE--FMHGPS  247 (249)
Q Consensus       238 KLfE--FM~e~~  247 (249)
                      -++.  -+|.++
T Consensus       539 ~ll~~~gl~~~~  550 (980)
T 3ibv_A          539 YFVGPRGIHNTN  550 (980)
T ss_dssp             HHTSTTTTTCCC
T ss_pred             HHhccccccCCC
Confidence            9888  776554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.79  E-value=0.00071  Score=65.71  Aligned_cols=192  Identities=11%  Similarity=0.219  Sum_probs=127.1

Q ss_pred             HHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHHhhcCC
Q psy4087          17 LVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAK   96 (249)
Q Consensus        17 lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I~~M~k   96 (249)
                      ++....-.+.++...|+++|..++.....-.......+..|..               ......+++..+...++..|.+
T Consensus       271 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~il~~ll~~l~~  335 (861)
T 2bpt_A          271 TIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQ---------------SYNFALSSIKDVVPNLLNLLTR  335 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCC---------------CCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh---------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344677999999999999987642100000000000100               0112356678888899999988


Q ss_pred             CceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhcc
Q psy4087          97 PEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISG  176 (249)
Q Consensus        97 PeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISG  176 (249)
                      ++|     |+          |.|+-+..+...++|..|+.-..+++...+.+.+...+++.  +|..-..-||++|+|+.
T Consensus       336 ~~~-----d~----------~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          336 QNE-----DP----------EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD--NWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             CCC-----C-----------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSS
T ss_pred             ccc-----cc----------ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHc
Confidence            753     11          11223556677788887776555666667777777766554  46677888999999998


Q ss_pred             CCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhh---HHHHHHHHHHHHhhhcC
Q psy4087         177 AMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH---WKFLKTVVNKLFEFMHG  245 (249)
Q Consensus       177 am~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~---w~fLktVv~KLfEFM~e  245 (249)
                      ...++.-+.++..++..|+..+..     ....|....++.+|++.+++..+   .+++..++..|++.+++
T Consensus       399 ~~~~~~~~~~l~~il~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~  465 (861)
T 2bpt_A          399 GPDKVQRTYYVHQALPSILNLMND-----QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD  465 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence            776455567788888888877642     24556667788999999999875   67899999999988865

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.66  E-value=0.0002  Score=71.05  Aligned_cols=192  Identities=17%  Similarity=0.291  Sum_probs=132.7

Q ss_pred             HHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHH
Q psy4087          12 TALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMV   91 (249)
Q Consensus        12 ~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I   91 (249)
                      ..+.+++....-+|.++=..+++||..++..     +.                         -+....+.+.++..+++
T Consensus       256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-----~~-------------------------~~~~~~~~~~~l~p~ll  305 (852)
T 4fdd_A          256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQ-----PI-------------------------CKDVLVRHLPKLIPVLV  305 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-----TT-------------------------HHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-----hh-------------------------HHHHHHHHHHHHHHHHH
Confidence            3455566665557788999999999775531     00                         11223556778888888


Q ss_pred             hhcCCCceEEE-e----ecCCCchhhhhhcch-hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccch
Q psy4087          92 SRMAKPEEVLV-V----ENENGEVVREFMKDT-DSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLN  165 (249)
Q Consensus        92 ~~M~kPeEVlI-v----e~e~Geivre~~~dt-d~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN  165 (249)
                      ..|.-+++=.. .    ++|+++      .|. +.-.+.+..-.+|-.|+...++++...+...+...++++  +|..-.
T Consensus       306 ~~l~~~e~d~~~~~~d~~ed~~~------dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~--~~~~R~  377 (852)
T 4fdd_A          306 NGMKYSDIDIILLKGDVEGGSGG------DDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--EWVVKE  377 (852)
T ss_dssp             HHTSCCHHHHHHHHC------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS--SHHHHH
T ss_pred             HHcCCcHhHHHHhcCCccccccc------ccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--CHHHHH
Confidence            88854431100 0    001110      000 223456677788888888777787888888888777554  577778


Q ss_pred             hHHHhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHh--hHHHHHHHHHHHHhhh
Q psy4087         166 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFM  243 (249)
Q Consensus       166 ~LCWAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~--~w~fLktVv~KLfEFM  243 (249)
                      .-+||+|+|+....+..+ .++..++..|+.+..     |....|.+..++.+|++..++..  +..++..++..|++.+
T Consensus       378 aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L  451 (852)
T 4fdd_A          378 SGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLS-----DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI  451 (852)
T ss_dssp             HHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            899999999998876555 588888888888773     45677888888999999998864  6889999999999988


Q ss_pred             cCCC
Q psy4087         244 HGPS  247 (249)
Q Consensus       244 ~e~~  247 (249)
                      ++.+
T Consensus       452 ~d~~  455 (852)
T 4fdd_A          452 LDSN  455 (852)
T ss_dssp             TCSS
T ss_pred             hCCC
Confidence            7653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=97.19  E-value=0.00039  Score=73.13  Aligned_cols=201  Identities=17%  Similarity=0.129  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHH
Q psy4087          10 FTTALHYLVLISEVDEVEIFKICLEYWNALSSDLYRESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYI   89 (249)
Q Consensus        10 l~~~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v   89 (249)
                      +..-+++|+.+..-++.++...+++||..++++.    ..    .                    +...|.+++.+|..+
T Consensus       349 l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~----~~----~--------------------~~~~~~~~l~~Ll~v  400 (1204)
T 3a6p_A          349 FGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE----IL----S--------------------RDPLLLAIIPKYLRA  400 (1204)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT----TT----T--------------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc----cc----c--------------------ccHHHHHHHHHHHHH
Confidence            3345777887877899999999999998766431    00    0                    112378899999999


Q ss_pred             H---HhhcCCCceEE------EeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcC----
Q psy4087          90 M---VSRMAKPEEVL------VVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNG----  156 (249)
Q Consensus        90 ~---I~~M~kPeEVl------Ive~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~----  156 (249)
                      +   +.||.=|++--      .-+|++|+  .|.  +.+--++=+.+.++|.-++.+.++++...+.+.+..++..    
T Consensus       401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~--~E~--~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~  476 (1204)
T 3a6p_A          401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSD--EDF--NAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDA  476 (1204)
T ss_dssp             HHHHHSCCCCSSCCSSTHHHHHHHHCSSH--HHH--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC---
T ss_pred             HHHHHHHhcCccccCCcchhhhhcccCCc--HHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcc
Confidence            9   99998887421      00111111  000  0122344467888999999999999998777777655431    


Q ss_pred             C-CCC---cc---------------cchhHHHhhhhhccCCChhhhh-HhHHHHHHHHHhhhhhccCCcchHHhhhccee
Q psy4087         157 T-EWS---WK---------------NLNTLCWAIGSISGAMHEEDEK-RFLVTVIKDLLGLCEQKKGKDNKAIIASNIMY  216 (249)
Q Consensus       157 ~-~ws---~~---------------~lN~LCWAIGSISGam~ee~Ek-~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMY  216 (249)
                      . .|.   +.               ...+.--+++|+...+..-.|+ .....++..|+.+|-.-..++-+  +..-.+.
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~--l~~~~i~  554 (1204)
T 3a6p_A          477 GSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPL--ILSCVLT  554 (1204)
T ss_dssp             --------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHH--HHHHHHH
T ss_pred             cccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChH--HHHHHHH
Confidence            1 221   11               1111222566665444111111 01112344555544332233444  4455567


Q ss_pred             eeccchHhHHhhHHHHHHHHHHHHhhhc
Q psy4087         217 VVGQYPRFLRAHWKFLKTVVNKLFEFMH  244 (249)
Q Consensus       217 vvgQYpRFLk~~w~fLktVv~KLfEFM~  244 (249)
                      ++|.|.+|+..|..+|..|++++|.-+.
T Consensus       555 ~l~~l~~~~~~~p~~L~~vL~~ll~~l~  582 (1204)
T 3a6p_A          555 NVSALFPFVTYRPEFLPQVFSKLFSSVT  582 (1204)
T ss_dssp             HHHHHGGGGGTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHhhc
Confidence            7888999999999999999999997654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.68  E-value=0.02  Score=55.64  Aligned_cols=196  Identities=16%  Similarity=0.256  Sum_probs=115.2

Q ss_pred             HHHHHHhhcCcCchhHHHHHHHHHHHHHHHHHh----hCCCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHH
Q psy4087          13 ALHYLVLISEVDEVEIFKICLEYWNALSSDLYR----ESPYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRY   88 (249)
Q Consensus        13 ~l~~lv~iS~i~d~EiFkicleyW~~~~~~ly~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~   88 (249)
                      .+..++....-++.++-..+++||..++.....    ..+.... ...|...              ......+.+.++..
T Consensus       260 l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~ll~  324 (876)
T 1qgr_A          260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ-GRPPEHT--------------SKFYAKGALQYLVP  324 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCSSC--------------CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcccccc-CCCccch--------------hHHHHHHHHHHHhH
Confidence            344444444456778999999999999875321    0000000 0001000              00011234566667


Q ss_pred             HHHhhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHH
Q psy4087          89 IMVSRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLC  168 (249)
Q Consensus        89 v~I~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LC  168 (249)
                      .++..|.+.+|     |+          |.+.-..-+..-.+|..|+....++....+...+...+...  +|..-..-|
T Consensus       325 ~ll~~l~~~~~-----d~----------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~--~~~~r~~a~  387 (876)
T 1qgr_A          325 ILTQTLTKQDE-----ND----------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAV  387 (876)
T ss_dssp             HHHHHTTCCCS-----SC----------CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred             HHHHHhhcccc-----cc----------cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC--ChHHHHHHH
Confidence            77777876643     11          01111223344455666655444555556666776666543  567778899


Q ss_pred             HhhhhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHh---hHHHHHHHHHHHHhhhcC
Q psy4087         169 WAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRA---HWKFLKTVVNKLFEFMHG  245 (249)
Q Consensus       169 WAIGSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~---~w~fLktVv~KLfEFM~e  245 (249)
                      |++|+|+....++.=..++..++..|+.+..     |....|-...+..+|++-..+..   +..++..++..|+..+++
T Consensus       388 ~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~  462 (876)
T 1qgr_A          388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMK-----DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA  462 (876)
T ss_dssp             HHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC
Confidence            9999999888744334577888888887663     22344555556677877777665   568899999999988764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.40  E-value=0.077  Score=53.66  Aligned_cols=158  Identities=15%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             HHHHHHH-HHHHhhcCCCce-EEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhc---
Q psy4087          81 PVLTKIR-YIMVSRMAKPEE-VLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVN---  155 (249)
Q Consensus        81 ~il~~lr-~v~I~~M~kPeE-VlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~---  155 (249)
                      +++.++- .+++..|.=+++ .-.-++|.-|-+|+...++|.-+..+..-++|.-|+.-..+.+...+.+.+...+.   
T Consensus       333 ~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~  412 (960)
T 1wa5_C          333 SAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYM  412 (960)
T ss_dssp             HHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhc
Confidence            7788888 788888864433 21123333445665554555556777888888888887776666666665544332   


Q ss_pred             -CCCCCcccchhHHHhhhhhccC--CChh-hh--------hHhHHH-HHHHHHhhhhhccCCcchHHhhhcceeeeccch
Q psy4087         156 -GTEWSWKNLNTLCWAIGSISGA--MHEE-DE--------KRFLVT-VIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYP  222 (249)
Q Consensus       156 -~~~ws~~~lN~LCWAIGSISGa--m~ee-~E--------k~Flv~-vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYp  222 (249)
                       +..-+|..--.-..|+|||+..  .... .+        ..|+++ |+.+| .   .. + +...++-.-.+..+|||.
T Consensus       413 ~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~---~~-~-~~~p~vr~~a~~~lg~~~  486 (960)
T 1wa5_C          413 SDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-T---SN-N-IPHIILRVDAIKYIYTFR  486 (960)
T ss_dssp             C----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-H---CS-S-CSCHHHHHHHHHHHHHTG
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh-c---CC-C-CCCceehHHHHHHHHHHH
Confidence             1233577778889999999832  1211 11        134444 33333 1   11 1 225566666778999998


Q ss_pred             HhHHhhHHHHHHHHHHHHhhhcCC
Q psy4087         223 RFLRAHWKFLKTVVNKLFEFMHGP  246 (249)
Q Consensus       223 RFLk~~w~fLktVv~KLfEFM~e~  246 (249)
                      .++  +.+++..++.-++..++.+
T Consensus       487 ~~~--~~~~l~~~l~~l~~~L~d~  508 (960)
T 1wa5_C          487 NQL--TKAQLIELMPILATFLQTD  508 (960)
T ss_dssp             GGS--CHHHHHHHHHHHHHHTTCS
T ss_pred             hhC--CHHHHHHHHHHHHHHhCCC
Confidence            876  5678999999888887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=94.29  E-value=0.17  Score=44.87  Aligned_cols=186  Identities=16%  Similarity=0.269  Sum_probs=109.1

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHHhhcCCCceE
Q psy4087          23 VDEVEIFKICLEYWNALSSDLYRESPYMS--SASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKPEEV  100 (249)
Q Consensus        23 i~d~EiFkicleyW~~~~~~ly~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I~~M~kPeEV  100 (249)
                      -.+.++-..+++||..++...........  ...+.|...             ....+..+.+..+...++..|.+.+| 
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~p~l~~~l~~~d~-  335 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH-------------TSKFYAKGALQYLVPILTQTLTKQDE-  335 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC-------------CCCCHHHHHHHHHHHHHHHHTTCCCS-
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc-------------hhHHHHHHHhhhccHHHHHHHHhccc-
Confidence            35678899999999999876431100000  000001000             01112244566777777887876542 


Q ss_pred             EEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhccCCCh
Q psy4087         101 LVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGAMHE  180 (249)
Q Consensus       101 lIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISGam~e  180 (249)
                         ++++           +.-..-...-.+|-.|+..-.+.....+...+...++..  +|..--.-|+|+|+++....+
T Consensus       336 ---d~~~-----------~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~  399 (462)
T 1ibr_B          336 ---NDDD-----------DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEP  399 (462)
T ss_dssp             ---SCCT-----------TCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCT
T ss_pred             ---cccc-----------ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcH
Confidence               1111           111223445567777776655667777777777766544  566777889999999976653


Q ss_pred             hhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHh---hHHHHHHHHHHHHhhh
Q psy4087         181 EDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRA---HWKFLKTVVNKLFEFM  243 (249)
Q Consensus       181 e~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~---~w~fLktVv~KLfEFM  243 (249)
                      +.=+..+..++..|+.+...     ....|-......+|++-..+..   +-.++..++..|+.-+
T Consensus       400 ~~~~~~l~~~~~~l~~~l~d-----~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L  460 (462)
T 1ibr_B          400 SQLKPLVIQAMPTLIELMKD-----PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL  460 (462)
T ss_dssp             TTTCTTTTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence            32233455666666666542     2244556666677777776665   3578999999888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.62
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	80.54

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.036  Score=50.11  Aligned_cols=191  Identities=16%  Similarity=0.257  Sum_probs=126.0

Q ss_pred             HHhhcCcCchhHHHHHHHHHHHHHHHHHhhCCC-----CCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHH
Q psy4087          17 LVLISEVDEVEIFKICLEYWNALSSDLYRESPY-----MSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMV   91 (249)
Q Consensus        17 lv~iS~i~d~EiFkicleyW~~~~~~ly~e~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I   91 (249)
                      +.....-+++++.+.++++|..++..-+.....     .....  +...              ........+..+..++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~l~~~l~  327 (876)
T d1qgra_         264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP--PEHT--------------SKFYAKGALQYLVPILT  327 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--CSSC--------------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh--HHHH--------------HHHHHHHHHHHHHHhhH
Confidence            334444567789999999999987643311100     00000  0000              01122455666666777


Q ss_pred             hhcCCCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhh
Q psy4087          92 SRMAKPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAI  171 (249)
Q Consensus        92 ~~M~kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAI  171 (249)
                      ..|...++     + +         +.+.....+..-++|..+++..+.++...+.+.+...++...|  ..-...++++
T Consensus       328 ~~~~~~~~-----~-~---------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~--~~r~~~~~~l  390 (876)
T d1qgra_         328 QTLTKQDE-----N-D---------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVMAF  390 (876)
T ss_dssp             HHTTCCCS-----S-C---------CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH--HHHHHHHHHH
T ss_pred             HHHHhccc-----c-c---------ccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchH--HHHHHHHHHH
Confidence            77766543     1 1         1133345666778888888888888888899999888776555  4445679999


Q ss_pred             hhhccCCChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHH---hhHHHHHHHHHHHHhhhcC
Q psy4087         172 GSISGAMHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLR---AHWKFLKTVVNKLFEFMHG  245 (249)
Q Consensus       172 GSISGam~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk---~~w~fLktVv~KLfEFM~e  245 (249)
                      |+++.....+.-+.++..++..++....     |....|.+..++.+|++..++.   .++.++..++..+++.+..
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  462 (876)
T d1qgra_         391 GCILEGPEPSQLKPLVIQAMPTLIELMK-----DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA  462 (876)
T ss_dssp             HHTSSSSCHHHHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHhhc-----CCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC
Confidence            9999888888888999999998887764     3344566667788888877664   4567788888888877653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.019  Score=53.48  Aligned_cols=145  Identities=13%  Similarity=0.164  Sum_probs=93.9

Q ss_pred             CCceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHh----hcCCCCCcccchhHHHhh
Q psy4087          96 KPEEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQ----VNGTEWSWKNLNTLCWAI  171 (249)
Q Consensus        96 kPeEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q----~~~~~ws~~~lN~LCWAI  171 (249)
                      .|+++-..+++..+-+++...+++.-......-+.+.-+++-..+.+...+.+.+...    .++...+|......+.++
T Consensus       350 ~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~  429 (959)
T d1wa5c_         350 REEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLF  429 (959)
T ss_dssp             CGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred             CHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHH
Confidence            5666555566666777777777777677788888899999888887776666655443    345567888888899999


Q ss_pred             hhhccC--CCh---------hhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhhHHHHHHHHHHHH
Q psy4087         172 GSISGA--MHE---------EDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLF  240 (249)
Q Consensus       172 GSISGa--m~e---------e~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~w~fLktVv~KLf  240 (249)
                      ||++..  ...         .+-..|+..++...|.     .+.++..++.+.++..+|+|..++..  +++..++..++
T Consensus       430 ~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~-----~~~~~~~~lr~~~~~~i~~~~~~~~~--~~~~~~~~~l~  502 (959)
T d1wa5c_         430 TALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-----SNNIPHIILRVDAIKYIYTFRNQLTK--AQLIELMPILA  502 (959)
T ss_dssp             HHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-----CSSCSCHHHHHHHHHHHHHTGGGSCH--HHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHc-----cCCCchHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHH
Confidence            987621  111         1123445555444443     23445566777888999999988753  57889999999


Q ss_pred             hhhcCCC
Q psy4087         241 EFMHGPS  247 (249)
Q Consensus       241 EFM~e~~  247 (249)
                      .++..++
T Consensus       503 ~~L~~~~  509 (959)
T d1wa5c_         503 TFLQTDE  509 (959)
T ss_dssp             HHTTCSC
T ss_pred             HHhCCCc
Confidence            9987653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.54  E-value=3.4  Score=36.26  Aligned_cols=181  Identities=13%  Similarity=0.251  Sum_probs=106.1

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHhhC----CCCCCCCCCCccCCCCCCCccchhHHHHHHhhHHHHHHHHHHHHhhcCCC
Q psy4087          22 EVDEVEIFKICLEYWNALSSDLYRES----PYMSSASGLPIMDLPNNKSHTMDEAVARRQFYAPVLTKIRYIMVSRMAKP   97 (249)
Q Consensus        22 ~i~d~EiFkicleyW~~~~~~ly~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~Y~~il~~lr~v~I~~M~kP   97 (249)
                      +-.+.++-+.++++|..++.......    ....  .  +..               ......+.+.++...+..-+.++
T Consensus       276 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~--~--~~~---------------~~~~~~~~l~~i~~~l~~~l~~~  336 (861)
T d2bpta1         276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQ--S--PLQ---------------SYNFALSSIKDVVPNLLNLLTRQ  336 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--C--SCC---------------CCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h--HHH---------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            44677899999999998876532110    0000  0  000               01123455666667777777766


Q ss_pred             ceEEEeecCCCchhhhhhcchhhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhhcCCCCCcccchhHHHhhhhhccC
Q psy4087          98 EEVLVVENENGEVVREFMKDTDSINLYKNMRETLVYLTHLNYTDTEQVMTQKLQQQVNGTEWSWKNLNTLCWAIGSISGA  177 (249)
Q Consensus        98 eEVlIve~e~Geivre~~~dtd~i~lYk~mretLvyLt~Ld~~dt~~im~ekL~~q~~~~~ws~~~lN~LCWAIGSISGa  177 (249)
                      .+-    +++           +..........+|-.++...+++....+.+.+....+..  +|.....-+.++|+++..
T Consensus       337 ~~~----~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~l~~i~~~  399 (861)
T d2bpta1         337 NED----PED-----------DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDG  399 (861)
T ss_dssp             CCC-----CC-----------CCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS
T ss_pred             hcc----ccc-----------hhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhH--HHHHHHHHHHHHHHHHhh
Confidence            541    111           122334455666777777667777777777776655433  566677788999999998


Q ss_pred             CChhhhhHhHHHHHHHHHhhhhhccCCcchHHhhhcceeeeccchHhHHhh---HHHHHHHHHHHHhhh
Q psy4087         178 MHEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH---WKFLKTVVNKLFEFM  243 (249)
Q Consensus       178 m~ee~Ek~Flv~vIk~LL~LcE~k~gk~nKAvIASnIMYvvgQYpRFLk~~---w~fLktVv~KLfEFM  243 (249)
                      ..++.-+.++..++..++++....     ...|-....+.+|++-..+...   ...+..++..++...
T Consensus       400 ~~~~~~~~~l~~~l~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~  463 (861)
T d2bpta1         400 PDKVQRTYYVHQALPSILNLMNDQ-----SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL  463 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCc-----chhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcc
Confidence            888877888888888887765422     2233344445555554444322   234555666655544