Psyllid ID: psy4101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MGMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQNRLQVSL
Secondary Structure (PSIPRED)
cccEEEEEcccEEEEcccccccHHHHHHcccccHHHHHHcccccEEEccccccccccccccEEEEEEcccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEEccHHHHHHHHHHcccEccHHHHHHccccccEcccccEEEEcHHccccEEEEEcccEEEEEccccccc
Coil and Loop (DISEMBL)
mgmlrhrpqasnvilsagtigspqilmisgigpkdhlqdmgipvihdlrvgdnlqdhvgmagltflvdkpvsiVQNRLQVSL
Flexible Loop (DISEMBL)
MGMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTflvdkpvsiVQNRLQVSL
Low Complexity Region (SEG)
MGMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQNRLQVSL
Disordered region (IsUnstruct)
************VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQ*******
Disordered Region (DISOPRED)
*G*LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQ*RLQVS*
Disordered Region (DISEMBL)
********QASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQNRLQVSL
Disordered Region (DISPRO)
*GMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQNRL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVSIVQNRLQVSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
C6DKY4	559	Choline dehydrogenase OS=	yes	N/A	0.731	0.107	0.580	1e-11
Q6D6D9	559	Choline dehydrogenase OS=	yes	N/A	0.731	0.107	0.564	1e-10
Q47944	531	L-sorbose 1-dehydrogenase	yes	N/A	0.719	0.111	0.466	1e-10
Q1QXE1	560	Choline dehydrogenase OS=	yes	N/A	0.731	0.107	0.5	9e-10
Q6LGH5	568	Choline dehydrogenase OS=	yes	N/A	0.585	0.084	0.612	9e-10
Q1IG70	565	Choline dehydrogenase OS=	yes	N/A	0.731	0.106	0.5	1e-09
A5WA97	565	Choline dehydrogenase OS=	yes	N/A	0.731	0.106	0.5	2e-09
Q88CW6	565	Choline dehydrogenase OS=	yes	N/A	0.731	0.106	0.5	2e-09
Q4K4K7	567	Choline dehydrogenase OS=	yes	N/A	0.731	0.105	0.5	2e-09
B0KN19	565	Choline dehydrogenase OS=	yes	N/A	0.731	0.106	0.5	2e-09

>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betA PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           V+L AG I SPQIL  SG+GPKD LQ + IPV+HDL  VG+NLQDH+ M  L +   +PV
Sbjct: 252 VLLCAGAIASPQILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEMY-LQYACKEPV 310

Query: 72  SI 73
           S+
Sbjct: 311 SL 312

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.
Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1

>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           V+L AG I SPQIL  SG+GPKD LQ + I V+HDL  VG+NLQDH+ M  L +   +PV
Sbjct: 252 VLLCAGAIASPQILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMY-LQYACKEPV 310

Query: 72  SI 73
           S+
Sbjct: 311 SL 312

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 2   GMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM 60
           G L     +  ++++AG IG+P+++M+SG+GP  HL++ GIPV+ DL  VG+NLQDH G+
Sbjct: 237 GTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGV 296

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           V+L AG I SPQIL  SG+G  +HL++  IPV+H+L  VG+NLQDH+ M  + +   KP+
Sbjct: 256 VLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHLEMY-IQYECKKPI 314

Query: 72  SI 73
           S+
Sbjct: 315 SL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 11  SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHV 58
           + V+LSAG++GSPQ+L +SGIGPK  L+  GI V HDL  VG+NLQDH+
Sbjct: 249 TEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHL 297

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Photobacterium profundum (taxid: 74109)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betA PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+S+G I SPQ+L  SG+GP+  L+ + IPV+HDL  VG+NLQDH+ +  L +   +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314

Query: 72  SI 73
           S+
Sbjct: 315 SL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betA PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+S+G I SPQ+L  SG+GP+  L+ + IPV+HDL  VG+NLQDH+ +  L +   +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314

Query: 72  SI 73
           S+
Sbjct: 315 SL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain F1 / ATCC 700007) (taxid: 351746)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+S+G I SPQ+L  SG+GP+  L+ + IPV+HDL  VG+NLQDH+ +  L +   +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314

Query: 72  SI 73
           S+
Sbjct: 315 SL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain KT2440) (taxid: 160488)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betA PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+S+G I SPQ+L  SG+GP+  L+ + IPV+HDL  VG+NLQDH+ +  L +   +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314

Query: 72  SI 73
           S+
Sbjct: 315 SL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) (taxid: 220664)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+S+G I SPQ+L  SG+GP+  L+ + IPV+HDL  VG+NLQDH+ +  L +   +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314

Query: 72  SI 73
           S+
Sbjct: 315 SL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
156551708	624	PREDICTED: glucose dehydrogenase [accept	0.926	0.121	0.708	3e-24
307206069	618	Glucose dehydrogenase [acceptor] [Harpeg	0.865	0.114	0.746	6e-24
340720647	626	PREDICTED: glucose dehydrogenase [accept	0.926	0.121	0.708	9e-24
350401264	627	PREDICTED: glucose dehydrogenase [accept	0.926	0.121	0.708	9e-24
383860470	624	PREDICTED: glucose dehydrogenase [accept	0.865	0.113	0.746	3e-23
193664531	628	PREDICTED: glucose dehydrogenase [accept	0.829	0.108	0.764	3e-23
328785230	625	PREDICTED: glucose dehydrogenase [accept	0.865	0.113	0.746	3e-23
322796401	624	hypothetical protein SINV_00375 [Solenop	0.829	0.108	0.75	1e-22
357631699	1227	glucose dehydrogenase [Danaus plexippus]	0.817	0.054	0.776	2e-22
307172021	630	Glucose dehydrogenase [acceptor] [Campon	0.902	0.117	0.714	2e-22

>gi|156551708|ref|XP_001600419.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 3/79 (3%)

Query: 6   HRPQA---SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAG 62
           HR Q      VILSAG I S QILM+SGIGP++HLQ+MGIPV+ DLRVGDN+QDHVGM G
Sbjct: 297 HRQQVRARKEVILSAGAINSAQILMLSGIGPREHLQEMGIPVLKDLRVGDNMQDHVGMGG 356

Query: 63  LTFLVDKPVSIVQNRLQVS 81
           LTFLVDKPV+IVQ+R Q +
Sbjct: 357 LTFLVDKPVAIVQDRFQAA 375

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307206069|gb|EFN84162.1| Glucose dehydrogenase [acceptor] [Harpegnathos saltator]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 63/71 (88%)

Query: 11  SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70
             V+LSAG I SPQILM+SGIGP++HL+ +GIPVI DLRVGDNLQDHVGM GLTFL+DKP
Sbjct: 305 KEVVLSAGAINSPQILMLSGIGPREHLRHVGIPVIKDLRVGDNLQDHVGMGGLTFLIDKP 364

Query: 71  VSIVQNRLQVS 81
           V+IVQ+R QV+
Sbjct: 365 VAIVQSRFQVT 375

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340720647|ref|XP_003398745.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 67/79 (84%), Gaps = 3/79 (3%)

Query: 3   MLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAG 62
           M+R R +   VILSAG I S QILM+SG+GPK+HL+ +GIPVI DLRVGDNLQDHVGM G
Sbjct: 300 MVRARKE---VILSAGAINSAQILMLSGVGPKEHLRHVGIPVIKDLRVGDNLQDHVGMGG 356

Query: 63  LTFLVDKPVSIVQNRLQVS 81
           LTFL+DKPV+IVQ+RLQ +
Sbjct: 357 LTFLIDKPVAIVQDRLQAA 375

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350401264|ref|XP_003486103.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 67/79 (84%), Gaps = 3/79 (3%)

Query: 3   MLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAG 62
           M+R R +   VILSAG I S QILM+SG+GPK+HL+ +GIPVI DLRVGDNLQDHVGM G
Sbjct: 300 MVRARKE---VILSAGAINSAQILMLSGVGPKEHLRHVGIPVIKDLRVGDNLQDHVGMGG 356

Query: 63  LTFLVDKPVSIVQNRLQVS 81
           LTFL+DKPV+IVQ+RLQ +
Sbjct: 357 LTFLIDKPVAIVQDRLQAA 375

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383860470|ref|XP_003705712.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 11  SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70
             VILSAG I SPQILM+SGIGPK+HL+ MGI VI DL+VGDNLQDHVGM GLTFL+DKP
Sbjct: 305 KEVILSAGAINSPQILMLSGIGPKEHLRQMGIRVIKDLKVGDNLQDHVGMGGLTFLIDKP 364

Query: 71  VSIVQNRLQVS 81
           V+IVQ+R Q +
Sbjct: 365 VAIVQDRFQAA 375

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|193664531|ref|XP_001948787.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 63/68 (92%)

Query: 12  NVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPV 71
            VILS+G+IGS Q+LM+SGIGP++HLQ +GIPV+ DLRVGDNLQDHVGM GLTF+VDKPV
Sbjct: 309 EVILSSGSIGSAQLLMLSGIGPREHLQRLGIPVLQDLRVGDNLQDHVGMFGLTFIVDKPV 368

Query: 72  SIVQNRLQ 79
           +IVQNRL+
Sbjct: 369 AIVQNRLR 376

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|328785230|ref|XP_003250566.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Apis mellifera] gi|328785232|ref|XP_003250567.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Apis mellifera] gi|328785234|ref|XP_003250568.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 3 [Apis mellifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 11  SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70
             VILSAG I S QILM+SGIGPK+HL+ +GIPVI DLRVGDNLQDHVGM GLTFL+DKP
Sbjct: 305 KEVILSAGAINSAQILMLSGIGPKEHLRHIGIPVIKDLRVGDNLQDHVGMGGLTFLIDKP 364

Query: 71  VSIVQNRLQVS 81
           V+IVQ+R Q +
Sbjct: 365 VAIVQDRFQAA 375

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|322796401|gb|EFZ18935.1| hypothetical protein SINV_00375 [Solenopsis invicta]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 60/68 (88%)

Query: 11  SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70
             +ILSAG I SPQILM+SGIGPK+HLQ +GIPVI DL+VGDNLQDH+GM GLTFL+DKP
Sbjct: 305 KEIILSAGAINSPQILMLSGIGPKEHLQHIGIPVIKDLQVGDNLQDHIGMGGLTFLIDKP 364

Query: 71  VSIVQNRL 78
           V+IVQ+R 
Sbjct: 365 VAIVQDRF 372

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631699|gb|EHJ79168.1| glucose dehydrogenase [Danaus plexippus]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/67 (77%), Positives = 58/67 (86%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
           VILSAG I SPQ+LM+SGIGPKDHLQ +GI V+ DL VG+NL DHVG+ GLTFLVDKPV 
Sbjct: 303 VILSAGAINSPQLLMLSGIGPKDHLQSVGIKVLKDLPVGENLMDHVGVGGLTFLVDKPVG 362

Query: 73  IVQNRLQ 79
           IVQNRLQ
Sbjct: 363 IVQNRLQ 369

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172021|gb|EFN63615.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 3/77 (3%)

Query: 3   MLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAG 62
           M+R R +   VILSAG I SPQILM+SGIGPK+HL+ +GIPVI DLRVGDNLQD VGM G
Sbjct: 300 MVRARKE---VILSAGAINSPQILMLSGIGPKEHLRHIGIPVIEDLRVGDNLQDDVGMGG 356

Query: 63  LTFLVDKPVSIVQNRLQ 79
           L FL+DKPV IVQ+R Q
Sbjct: 357 LAFLIDKPVVIVQDRFQ 373

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.792	0.092	0.661	8.3e-19
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.817	0.077	0.582	1.8e-17
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.902	0.118	0.554	2.1e-17
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.939	0.106	0.487	7.6e-14
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.817	0.107	0.550	5.5e-13
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.817	0.105	0.507	5.7e-13
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.682	0.090	0.625	6.9e-13
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.731	0.096	0.555	6.1e-11
UNIPROTKB|Q488U4	534	CPS_0670 "Oxidoreductase, GMC	0.560	0.086	0.617	1.6e-10
TIGR_CMR|CPS_0670	534	CPS_0670 "oxidoreductase, GMC	0.560	0.086	0.617	1.6e-10

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 43/65 (66%), Positives = 56/65 (86%)

Query:    13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
             VI+SAG I +PQ++M+SG+GP+ HL+  GI V+ DL VG+N+QDHVGM GLTFLVDKPV+
Sbjct:   307 VIISAGAINTPQLMMLSGLGPRKHLEKHGIRVLQDLPVGENMQDHVGMGGLTFLVDKPVA 366

Query:    73 IVQNR 77
             IVQ+R
Sbjct:   367 IVQDR 371

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 39/67 (58%), Positives = 55/67 (82%)

Query:    13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
             VI SAG + +P++LM+SG+GP +HLQ+  IPVI DL VG+N+QDHVG+ GLTF+VD P++
Sbjct:   547 VIASAGALNTPKLLMLSGVGPAEHLQEHNIPVISDLPVGNNMQDHVGLGGLTFVVDAPLT 606

Query:    73 IVQNRLQ 79
             + +NR Q
Sbjct:   607 VTRNRFQ 613

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 41/74 (55%), Positives = 56/74 (75%)

Query:     4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGL 63
             L H      V+LS G++ SPQ+LM+SG+GP+  L    IP+I +L VG+NLQDH+G+ GL
Sbjct:   301 LYHVRATKEVVLSGGSVNSPQLLMLSGVGPRKELAKHRIPLIKELSVGENLQDHIGLGGL 360

Query:    64 TFLVDKPVSIVQNR 77
             TFLV++PVSIV+NR
Sbjct:   361 TFLVNQPVSIVENR 374

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 38/78 (48%), Positives = 53/78 (67%)

Query:     2 GMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM 60
             G L++      VILSAG IGSP ++M+SGIG  + L  +GIP++  L  VG NLQDH+ +
Sbjct:   335 GRLQNVYATREVILSAGAIGSPHLMMLSGIGHGEELGRVGIPLVQHLPGVGQNLQDHIAV 394

Query:    61 AGLTFLVDKPVSIVQNRL 78
              G+ FL+D P+SIV  R+
Sbjct:   395 GGIAFLIDYPISIVMKRM 412

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 38/69 (55%), Positives = 50/69 (72%)

Query:     2 GMLRHRPQASN-VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGM 60
             G   +  +AS  VI+SAG IGSPQIL++SGIGP DHL+ +GIPV  DL VG+NL+DH  +
Sbjct:   296 GKKEYTVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIPVKLDLPVGENLKDHASL 355

Query:    61 AGLTFLVDK 69
               + F +DK
Sbjct:   356 P-MIFQIDK 363

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     2 GMLRHRPQASN-VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVG 59
             G+L+H  +A   VILSAG++ SPQ+LM+SG+GP+D L+  GIPV+  L  VG NLQDH+ 
Sbjct:   297 GLLKHTVRAKREVILSAGSLASPQLLMVSGVGPRDQLEPQGIPVVQHLPGVGGNLQDHIS 356

Query:    60 MAGLTFLVD 68
              +G  +  D
Sbjct:   357 TSGAIYTFD 365

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query:    13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVD 68
             VILSAGTI SPQ+LM+SGIGP +HL++  I V+ DL VG NLQDH+ + GL F+V+
Sbjct:   298 VILSAGTIASPQLLMLSGIGPAEHLREHNITVMQDLPVGYNLQDHITLNGLVFVVN 353

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 162 (62.1 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 35/63 (55%), Positives = 47/63 (74%)

Query:    13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
             VILSAG I +PQ+LM+SG+GP  HL++MGI  + DL VG NLQDH+  A ++FL +  VS
Sbjct:   312 VILSAGAINTPQLLMLSGVGPAKHLREMGIKPLADLAVGYNLQDHIAPA-ISFLCN--VS 368

Query:    73 IVQ 75
              +Q
Sbjct:   369 SLQ 371

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|Q488U4 CPS_0670 "Oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query:    13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHV 58
             VILS G  GSPQ+LM+SG+GPK+HL D  I ++H L  VG NLQDH+
Sbjct:   246 VILSGGAFGSPQVLMLSGVGPKEHLSDKNISLVHHLPGVGQNLQDHI 292

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0670 CPS_0670 "oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query:    13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHV 58
             VILS G  GSPQ+LM+SG+GPK+HL D  I ++H L  VG NLQDH+
Sbjct:   246 VILSGGAFGSPQVLMLSGVGPKEHLSDKNISLVHHLPGVGQNLQDHI 292

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7GYG5	BETA_ACIB3	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1086	yes	N/A
Q6LGH5	BETA_PHOPR	1, ., 1, ., 9, 9, ., 1	0.6122	0.5853	0.0845	yes	N/A
B0V945	BETA_ACIBY	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1086	yes	N/A
A7MFA8	BETA_CROS8	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1073	yes	N/A
B0VST3	BETA_ACIBS	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1086	yes	N/A
Q6UPE0	CHDH_RAT	1, ., 1, ., 9, 9, ., 1	0.56	0.5975	0.0818	yes	N/A
Q4ZM63	BETA_PSEU2	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1056	yes	N/A
Q8NE62	CHDH_HUMAN	1, ., 1, ., 9, 9, ., 1	0.6	0.6463	0.0892	yes	N/A
Q8UH55	BETA_AGRT5	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1092	yes	N/A
B7I895	BETA_ACIB5	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1086	yes	N/A
C6DKY4	BETA_PECCP	1, ., 1, ., 9, 9, ., 1	0.5806	0.7317	0.1073	yes	N/A
Q88AE7	BETA_PSESM	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1056	yes	N/A
B2HV79	BETA_ACIBC	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1086	yes	N/A
Q6FDF9	BETA_ACIAD	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1084	yes	N/A
Q8BJ64	CHDH_MOUSE	1, ., 1, ., 9, 9, ., 1	0.5357	0.6585	0.0906	yes	N/A
Q4A0Q1	BETA_STAS1	1, ., 1, ., 9, 9, ., 1	0.5185	0.6463	0.0946	yes	N/A
Q48CM7	BETA_PSE14	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1056	yes	N/A
A6T613	BETA_KLEP7	1, ., 1, ., 9, 9, ., 1	0.5161	0.7317	0.1083	yes	N/A
Q6D6D9	BETA_ERWCT	1, ., 1, ., 9, 9, ., 1	0.5645	0.7317	0.1073	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-21
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	6e-17
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	2e-16
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	3e-13
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	4e-12
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	6e-08

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 86.4 bits (215), Expect = 1e-21
 Identities = 35/62 (56%), Positives = 49/62 (79%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VILSAG I SPQ+L +SGIGP +HL+++GIPV+HDL  VG+NLQDH+ +  + +   +PV
Sbjct: 254 VILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYECKQPV 312

Query: 72  SI 73
           S+
Sbjct: 313 SL 314

Length = 560

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 73.0 bits (179), Expect = 6e-17
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 2   GMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM 60
           G   H      VILSAG I SPQ+L +SGIG  +HL+++GI     L  VG+NLQDH+ +
Sbjct: 236 GRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV 295

Query: 61  AGLTFLVDKPVSI 73
             +     +PVS+
Sbjct: 296 Y-VQHACKQPVSL 307

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 10  ASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVD 68
           A  V+L+AG I SP++L++SGIGP DHL + GI V+  L  VG NLQDH+ +  + F   
Sbjct: 255 AREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEAT 313

Query: 69  KPVS 72
           +P +
Sbjct: 314 EPTN 317

Length = 542

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 7   RPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVI-HDLRVGDNLQD 56
             + S +ILSAG IGSPQ+L++SGIGPK  L+   IPV+ H+  VG  + D
Sbjct: 276 NNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMAD 326

Length = 587

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 59.5 bits (144), Expect = 4e-12
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 10  ASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDH 57
           A  V+L AG + S  +L++SGIGP + L+  GI V+ DL VG +  DH
Sbjct: 244 ADRVVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVGSDFVDH 291

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 1   MGMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDH 57
            G+ R    A  V+++AG + +P +L+ SG+G   H             VG NLQ H
Sbjct: 172 GGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLH 216

This family of proteins bind FAD as a cofactor. Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG1238|consensus	623		99.9
PRK02106	560	choline dehydrogenase; Validated	99.84
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.83
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.82
PLN02785	587	Protein HOTHEAD	99.81
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.56
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.09

>KOG1238|consensus

Probab=99.90  E-value=1.9e-24  Score=174.58  Aligned_cols=72  Identities=54%  Similarity=0.863  Sum_probs=63.2

Q ss_pred             ceeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCccccc
Q psy4101           3 MLRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPVSIVQ   75 (82)
Q Consensus         3 ~~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~~~~~   75 (82)
                      .+.++++| ||||||||||+||||||+|||||+++|+++|||++.|+| ||+|||||+..+.+++..+ +.+..+
T Consensus       299 ~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~~  372 (623)
T KOG1238|consen  299 GKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELSL  372 (623)
T ss_pred             ceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCC-Cccccc
Confidence            46789999 999999999999999999999999999999999999999 9999999999954555443 555444

>PRK02106 choline dehydrogenase; Validated

Probab=99.84  E-value=3.6e-21  Score=151.33  Aligned_cols=64  Identities=53%  Similarity=0.950  Sum_probs=58.8

Q ss_pred             EEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101           7 RPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV   71 (82)
Q Consensus         7 ~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~   71 (82)
                      .+.|||||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+.. .+.|+++++.
T Consensus       248 ~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~  312 (560)
T PRK02106        248 ARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPV  312 (560)
T ss_pred             EEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCc
Confidence            3445999999999999999999999999999999999999999 99999999998 6888887654

>TIGR01810 betA choline dehydrogenase

Probab=99.83  E-value=7.9e-21  Score=148.44  Aligned_cols=65  Identities=46%  Similarity=0.749  Sum_probs=59.1

Q ss_pred             EEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101           6 HRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV   71 (82)
Q Consensus         6 ~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~   71 (82)
                      .++.+ |||||||||++||+||++|||||+++|+++||+++.|+| ||+|||||+.+ .+.|+++++.
T Consensus       239 ~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~  305 (532)
T TIGR01810       239 EHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPV  305 (532)
T ss_pred             EEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCc
Confidence            34444 999999999999999999999999999999999999999 99999999998 6888887653

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.82  E-value=1.2e-21  Score=140.86  Aligned_cols=54  Identities=61%  Similarity=1.003  Sum_probs=45.6

Q ss_pred             eEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCCCccccccCc
Q psy4101           5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHV   58 (82)
Q Consensus         5 ~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlpVG~nl~DH~   58 (82)
                      .+.+.||+|||||||++||+|||+|||||.++|+++||+++.|+|||+||||||
T Consensus       242 ~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~  295 (296)
T PF00732_consen  242 RRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP  295 (296)
T ss_dssp             EEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred             eeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence            345555999999999999999999999999999999999999999999999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02785 Protein HOTHEAD

Probab=99.81  E-value=1.8e-20  Score=150.10  Aligned_cols=60  Identities=43%  Similarity=0.705  Sum_probs=56.4

Q ss_pred             e-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101          10 A-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus        10 A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~   70 (82)
                      + +|||||||+++||+|||+|||||+++|+++|||++.|+| ||+|||||+.. .+.+..+.+
T Consensus       278 ~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~~~~~  339 (587)
T PLN02785        278 KGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVPSKAP  339 (587)
T ss_pred             cCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEEEeCCC
Confidence            5 899999999999999999999999999999999999999 99999999998 688877654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.56  E-value=1.6e-15  Score=120.49  Aligned_cols=65  Identities=46%  Similarity=0.807  Sum_probs=58.7

Q ss_pred             EEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101           6 HRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV   71 (82)
Q Consensus         6 ~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~   71 (82)
                      ....+ +|||||||+|+||+|||+||||+.+.+..+|++++.++| ||+|||||... .+.+..+.+.
T Consensus       250 ~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~  316 (542)
T COG2303         250 ETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPT  316 (542)
T ss_pred             EEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCcc
Confidence            34444 999999999999999999999999999999999999999 99999999998 6888876654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.09  E-value=1.9e-10  Score=92.41  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=46.1

Q ss_pred             eeEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101           4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus         4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~   70 (82)
                      ..++++|+.||||||+|+||+||++|+++....  .-|+..-...+ ||||||||+.. ...+.++++
T Consensus       262 ~~~~v~A~~vVLAagaIetpRLLL~S~~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~  326 (544)
T TIGR02462       262 DRFEIKADVYVLACGAVHNPQILVNSGFGQLGR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTE  326 (544)
T ss_pred             cEEEEECCEEEEccCchhhHHHHHhCCCCCCcC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence            356799999999999999999999999985332  11221100125 99999999987 566666544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		3e-08
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		3e-08
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		3e-08
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		2e-07
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		5e-07
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		5e-07
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		1e-06
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		1e-06
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		1e-05
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		2e-05

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6   HRPQASN-VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDH 57
           HR  A N V+LS G I +P++LM+SGIGP  HL + GI V+ D   VG++LQDH
Sbjct: 257 HRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6   HRPQASN-VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDH 57
           HR  A N V+LS G I +P++LM+SGIGP  HL + GI V+ D   VG++LQDH
Sbjct: 257 HRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6   HRPQASN-VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDH 57
           HR  A N V+LS G I +P++LM+SGIGP  HL + GI V+ D   VG++LQDH
Sbjct: 257 HRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH 310

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 10  ASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDL-RVGDNLQDHVGMAGLTFLVD 68
           A  ++L AG + SP +LM SGIGP D L   G+  + D+  +G NLQDH+  AG  +   
Sbjct: 260 ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAAR 319
Query: 69  KPVSIVQNRLQVS 81
           KPV    +RLQ S
Sbjct: 320 KPVP--PSRLQHS 330

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVI 45
           VI+SAGTIG+PQ+L++SG+GP+ +L  + IPV+
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVI 45
           VI+SAGTIG+PQ+L++SG+GP+ +L  + IPV+
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVV 285

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM 60
           VILS G   +P++LM+SGIGP   L   GI  I D R VG NL DH G+
Sbjct: 262 VILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV 310

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVI 45
           VI+SAG IGSPQ+L++SG+GP+ +L  + IPV+
Sbjct: 254 VIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVV 286

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDH 57
           V+L+AG+  SP IL  SGIG K  L+ +GI  + DL VG NLQD 
Sbjct: 285 VLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQ 329

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGI-PVIHDLRVGDNLQDHVGMAGLTFL 66
           V+LSAG++G+P +L +SGIG ++ L  +GI  ++++  VG NL DH+ +    F+
Sbjct: 268 VVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFV 322

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	7e-30
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	8e-30
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-29
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	5e-29
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	3e-28
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	1e-27
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	3e-26
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	3e-24
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	9e-08

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  109 bits (274), Expect = 7e-30
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VILS G   +P++LM+SGIGP   L   GI  I D R VG NL DH G+      V    
Sbjct: 262 VILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV-PFVLRVKDGF 320

Query: 72  SIVQNRLQ 79
            +    L+
Sbjct: 321 GMDDVLLR 328

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  108 bits (273), Expect = 8e-30
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
           V+L+AG+  SP IL  SGIG K  L+ +GI  + DL VG NLQD      +   +    +
Sbjct: 285 VLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSAGA 343

Query: 73  I 73
            
Sbjct: 344 G 344

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  108 bits (272), Expect = 1e-29
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
           V+L+AG+  SP IL  SGIG K  L    +  + DL VG N+QD      ++       +
Sbjct: 289 VLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQT-TTTVSSRASSAGA 347

Query: 73  I 73
            
Sbjct: 348 G 348

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  106 bits (267), Expect = 5e-29
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           V+LSAG++G+P +L +SGIG ++ L  +GI  I +   VG NL DH+ +    F V+   
Sbjct: 268 VVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQ 326

Query: 72  SI 73
           + 
Sbjct: 327 TF 328

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  104 bits (261), Expect = 3e-28
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+SAGTIG+PQ+L++SG+GP+ +L  + IPV+     VG  L D+     +  L   P+
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP-RNFINILPPNPI 311

Query: 72  S 72
            
Sbjct: 312 E 312

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  102 bits (257), Expect = 1e-27
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 5   RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGL 63
                A  ++L AG + SP +LM SGIGP D L   G+  + D+  +G NLQDH+  AG 
Sbjct: 255 SAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGN 314

Query: 64  TFLVDKPVS 72
            +   KPV 
Sbjct: 315 LYAARKPVP 323

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 98.8 bits (247), Expect = 3e-26
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           V+LS G I +P++LM+SGIGP  HL + GI V+ D   VG++LQDH     + F   +P+
Sbjct: 265 VVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEG-VVQFEAKQPM 323

Query: 72  SI 73
             
Sbjct: 324 VA 325

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score = 93.4 bits (233), Expect = 3e-24
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-----------VGDNLQDHVGMA 61
           VILSAG  G+ +IL  SGIGP D +Q +                    VG N QD+  + 
Sbjct: 253 VILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI- 311

Query: 62  GLTFLVDKPVSI 73
            L F      + 
Sbjct: 312 NLVFTHPSIDAY 323

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 46.4 bits (109), Expect = 9e-08
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 5   RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLT 64
           R   +A   +L+AG + + Q+L+ SG G          P +    +G  + +   +   T
Sbjct: 308 RFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQSLVFCQT 366

Query: 65  FLVDKPVS 72
            +  + + 
Sbjct: 367 VMSTELID 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.89
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.89
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.86
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.8
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.78
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.74
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.73
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.61
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.53
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.27
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.97

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.89  E-value=4.1e-24  Score=168.97  Aligned_cols=66  Identities=39%  Similarity=0.507  Sum_probs=61.6

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCCCccccccCcCCceeEEEecCC
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~~~~~   70 (82)
                      +.++++| ||||||||+|+||||||+|||||+++|+++||+++.|+|||+|||||+.+ .+.|+++.+
T Consensus       275 ~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLPVG~NLqDH~~~-~~~~~~~~~  341 (583)
T 3qvp_A          275 NTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSA  341 (583)
T ss_dssp             CEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCCBBCCEEE-EEEEEECGG
T ss_pred             cEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCccccchhhCccc-eEEEEecCC
Confidence            4578999 89999999999999999999999999999999999999999999999998 688988653

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.89  E-value=2.3e-24  Score=169.64  Aligned_cols=68  Identities=37%  Similarity=0.609  Sum_probs=63.2

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCcc
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPVS   72 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~~   72 (82)
                      +.++++| ||||||||+|+||+|||+|||||+++|+++||++++|+| ||+|||||+.+ .+.|+.+.+.+
T Consensus       258 ~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~~-~~~~~~~~~~~  327 (566)
T 3fim_B          258 PTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQT  327 (566)
T ss_dssp             CCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEE-CCEEEESCSCS
T ss_pred             eEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCccc-eEEEEeCCCcc
Confidence            5688999 999999999999999999999999999999999999999 99999999998 68888876543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.86  E-value=3.8e-23  Score=162.99  Aligned_cols=67  Identities=42%  Similarity=0.617  Sum_probs=62.5

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV   71 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~   71 (82)
                      +.++++| ||||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|||||+.+ .+.|+++++.
T Consensus       252 ~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~~-~~~~~~~~~~  320 (577)
T 3q9t_A          252 NELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV-PFVLRVKDGF  320 (577)
T ss_dssp             CEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCEEE-EEEEEECTTS
T ss_pred             cEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCcce-eEEEEeCCCC
Confidence            4578999 999999999999999999999999999999999999999 99999999998 6889987654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.80  E-value=1.3e-20  Score=147.84  Aligned_cols=66  Identities=33%  Similarity=0.420  Sum_probs=61.6

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCCCccccccCcCCceeEEEecCC
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~~~~~   70 (82)
                      +.++++| |+||||||+++||+||++|||||+++|+++||+++.|+|||+|||||+.. .+.+.++++
T Consensus       279 ~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlPVG~nL~DH~~~-~~~~~~~~~  345 (587)
T 1gpe_A          279 VNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTT-TVSSRASSA  345 (587)
T ss_dssp             EEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCSBBCCEEE-EEEEEECGG
T ss_pred             cEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCCCCcchhcCccc-ceEEEeCCC
Confidence            4578999 99999999999999999999999999999999999999999999999998 688888654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.78  E-value=3e-20  Score=140.46  Aligned_cols=68  Identities=41%  Similarity=0.643  Sum_probs=59.5

Q ss_pred             eeEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101           4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV   71 (82)
Q Consensus         4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~   71 (82)
                      ....++|||||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|||||+......+..+++.
T Consensus       254 ~~~~~~a~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~~  322 (526)
T 3t37_A          254 GSAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV  322 (526)
T ss_dssp             EEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSCC
T ss_pred             ceEEEeecceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccCCc
Confidence            3467778999999999999999999999999999999999999999 9999999997644555555543

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.74  E-value=4.6e-19  Score=137.62  Aligned_cols=65  Identities=46%  Similarity=0.782  Sum_probs=60.4

Q ss_pred             eEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101           5 RHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus         5 ~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~   70 (82)
                      .++++| |+||||||+++||+||++|||||+++|+++||+++.|+| ||+|||||+.+ .+.|.++++
T Consensus       256 ~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~-~~~~~~~~~  322 (546)
T 2jbv_A          256 THRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEG-VVQFEAKQP  322 (546)
T ss_dssp             EEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEC-CEEEEESSC
T ss_pred             EEEEEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccc-eEEEEecCC
Confidence            468899 699999999999999999999999999999999999999 99999999998 588887654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.73  E-value=5e-19  Score=137.15  Aligned_cols=60  Identities=42%  Similarity=0.725  Sum_probs=55.9

Q ss_pred             e-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101          10 A-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus        10 A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~   70 (82)
                      | |+||||||+++||+||++|||||+++|+++||+++.|+| ||+|||||+.. .+.+.++++
T Consensus       249 a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~-~~~~~~~~~  310 (536)
T 1ju2_A          249 SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRN-FINILPPNP  310 (536)
T ss_dssp             EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEE-EEEECCSSC
T ss_pred             cCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcce-eEEEEeCCC
Confidence            6 999999999999999999999999999999999999999 99999999987 677777654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.61  E-value=6.1e-17  Score=124.37  Aligned_cols=60  Identities=40%  Similarity=0.597  Sum_probs=53.9

Q ss_pred             EEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccC------CCCee-----eeCCCccccccCcCCceeEEE
Q psy4101           6 HRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDM------GIPVI-----HDLRVGDNLQDHVGMAGLTFL   66 (82)
Q Consensus         6 ~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~------gI~~~-----~dlpVG~nl~DH~~~~~~~~~   66 (82)
                      .++++ ++||||||+++||++|++|||||+++|+++      ||+++     .|+|||+|||||+.+ .+.|.
T Consensus       245 ~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlpVG~nL~DH~~~-~~~~~  316 (546)
T 1kdg_A          245 IPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVFT  316 (546)
T ss_dssp             EEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTBBCCCCE-EEEEE
T ss_pred             EEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCCcccCcccCcce-eEEEe
Confidence            35655 999999999999999999999999999999      59885     899999999999988 57776

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.53  E-value=5.9e-15  Score=116.66  Aligned_cols=63  Identities=21%  Similarity=0.277  Sum_probs=58.2

Q ss_pred             eEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101           5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP   70 (82)
Q Consensus         5 ~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~   70 (82)
                      .++++|++||+|+|++.||++|++|||||+.+++.+||++  |+| ||+|||||+.. .+.|.++++
T Consensus       308 ~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~--~l~~vG~nl~dh~~~-~~~~~~~~~  371 (623)
T 3pl8_A          308 RFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE--LLPSLGSYITEQSLV-FCQTVMSTE  371 (623)
T ss_dssp             EEEECEEEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS--SCTTTTBSCBCCCEE-EEEEEECHH
T ss_pred             EEEEECCEEEEcCCCcCCHHHHHhcCCCccccccccCCCC--CCcccccchhhCcCc-eEEEEECCc
Confidence            4578889999999999999999999999999999999999  999 99999999998 688888654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.27  E-value=2.1e-12  Score=98.92  Aligned_cols=53  Identities=19%  Similarity=0.323  Sum_probs=43.5

Q ss_pred             eeEEEEecEEEEcCCCcchHHHHHHcC-CCCCCccccCCCCeeeeCCCccccccCcCCceeEEE
Q psy4101           4 LRHRPQASNVILSAGTIGSPQILMISG-IGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFL   66 (82)
Q Consensus         4 ~~~~v~A~eVILsaGa~~sP~lL~~SG-ig~~~~l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~   66 (82)
                      +.++++|++||||||+++||++|++|| ||        ||+++.| .||+|||||+.. .+.+.
T Consensus       271 ~~~~v~A~~VIlaaG~~~s~~lL~~Sg~ig--------~i~~~~~-~VG~nl~dh~~~-~~~~~  324 (504)
T 1n4w_A          271 ATKEISCRYLFLGAGSLGSTELLVRARDTG--------TLPNLNS-EVGAGWGPNGNI-MTARA  324 (504)
T ss_dssp             EEEEEEEEEEEECSHHHHHHHHHHHHHHTT--------SSTTCCT-TTTCCBBCTTCE-EEEEE
T ss_pred             eeEEEeeCEEEEccCCCCCHHHHHhccccC--------CCCCCCh-hhccccccCCcc-eeeec
Confidence            356788999999999999999999999 98        6776532 399999999977 34443

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.97  E-value=2e-10  Score=88.09  Aligned_cols=46  Identities=22%  Similarity=0.424  Sum_probs=38.6

Q ss_pred             eEEEEecEEEEcCCCcchHHHHHHcC-CCCCCccccCCCCeeeeCC-CccccccCcCC
Q psy4101           5 RHRPQASNVILSAGTIGSPQILMISG-IGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM   60 (82)
Q Consensus         5 ~~~v~A~eVILsaGa~~sP~lL~~SG-ig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~   60 (82)
                      .++++|++||||||+++||++|++|| ||.        +|  ...+ ||+||+||+..
T Consensus       277 ~~~~~A~~VIlaaGa~~sp~lL~~Sg~iG~--------lp--nl~d~VG~~l~~h~~~  324 (507)
T 1coy_A          277 TKVVTADRVFFAAGSVGTSKLLVSMKAQGH--------LP--NLSSQVGEGWGNNGNI  324 (507)
T ss_dssp             EEEEEEEEEEECSHHHHHHHHHHHHHHTTS--------ST--TSCTTTTCCBBCTTEE
T ss_pred             cEEEEeCEEEEccCccCCHHHHHhcccCCC--------CC--ccChhhCCccccCCcc
Confidence            57888999999999999999999999 982        33  1234 99999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	4e-23
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-19
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	7e-19
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	6e-11
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	3e-08
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-06

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 88.0 bits (217), Expect = 4e-23
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
           VI+SAGTIG+PQ+L++SG+GP+ +L  + IPV+     VG  L   V            +
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGDFRVTGINAL 312

Query: 72  SIVQNRL 78
            +V    
Sbjct: 313 RVVDGST 319

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 77.6 bits (190), Expect = 3e-19
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR--VGDNLQDHVG 59
           V+L+AG+  SP IL  SGIG K  L    +  + DL   +   +   +G
Sbjct: 289 VLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSRELG 337

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 76.5 bits (187), Expect = 7e-19
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVG--DNLQDHVG 59
           V+L+AG+  SP IL  SGIG K  L+ +GI  + DL VG    +   +G
Sbjct: 283 VLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPKEMG 331

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 54.3 bits (129), Expect = 6e-11
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 13  VILSAGTIGSPQILMISGIGPKDHLQDMGI-PVIHDLRVGDNLQDHVGMAGLTFLVDKPV 71
           VILSAG  G+ +IL  SGIGP D +Q +   P         N   ++ +   T       
Sbjct: 248 VILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQS 307

Query: 72  SIVQNRLQV 80
           ++V + ++V
Sbjct: 308 AVVDSNVKV 316

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 46.8 bits (110), Expect = 3e-08
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 5   RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMA 61
                A  V  +AG++G+ ++L+              +P +   +VG+     +  A
Sbjct: 273 TKVVTADRVFFAAGSVGTSKLLVSMK-------AQGHLPNLSS-QVGEGWGVLLNKA 321

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 5   RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMA 61
                   + L AG++GS ++L+ +            +P ++   VG      +G A
Sbjct: 269 TKEISCRYLFLGAGSLGSTELLVRAR-------DTGTLPNLNS-EVGAGWGCVLGKA 317

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.88
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.84
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.77
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.5
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.97
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.75
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.59
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	89.44
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	80.4

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.88  E-value=2.1e-24  Score=157.20  Aligned_cols=57  Identities=40%  Similarity=0.650  Sum_probs=53.8

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCC
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM   60 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~   60 (82)
                      +++.++| +|||||||||+||+|||+|||||+++|+++||+++.|+| ||+|||||+..
T Consensus       243 ~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~  301 (351)
T d1ju2a1         243 HQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLD  301 (351)
T ss_dssp             EEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBC
T ss_pred             EEEEeecCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCc
Confidence            3456888 899999999999999999999999999999999999999 99999999876

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.84  E-value=2e-22  Score=148.38  Aligned_cols=57  Identities=32%  Similarity=0.425  Sum_probs=53.9

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC--CccccccCcCC
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR--VGDNLQDHVGM   60 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp--VG~nl~DH~~~   60 (82)
                      .+++++| ||||||||+|+||+|||+|||||+++|+++||++++|+|  ||+|||||+..
T Consensus       279 ~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~Gvg~nl~dh~~~  338 (391)
T d1gpea1         279 VNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSRELGG  338 (391)
T ss_dssp             EEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCTCBSCGGGTC
T ss_pred             eEEEEEeCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCcccccccccCccc
Confidence            4578999 899999999999999999999999999999999999998  99999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.77  E-value=5.7e-20  Score=134.24  Aligned_cols=56  Identities=36%  Similarity=0.399  Sum_probs=48.9

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcC
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVG   59 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~   59 (82)
                      +.++++| ||||||||||+||+|||+|||||+++|+++||+++.|+| ++.+++||+.
T Consensus       273 ~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~g~~~~~~~~~  330 (385)
T d1cf3a1         273 NTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPKEM  330 (385)
T ss_dssp             EEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCTCBSCGGG
T ss_pred             CEEEEEeCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCCeEEECCcchhccCCCCc
Confidence            4578999 899999999999999999999999999999999999999 4445555443

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.50  E-value=4.6e-16  Score=112.59  Aligned_cols=41  Identities=39%  Similarity=0.509  Sum_probs=37.6

Q ss_pred             eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCe
Q psy4101           4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPV   44 (82)
Q Consensus         4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~   44 (82)
                      +..+++| +|||||||||+||+|||+|||||+++|+++||.+
T Consensus       238 ~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~p  279 (360)
T d1kdga1         238 GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNP  279 (360)
T ss_dssp             GEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSH
T ss_pred             eEEEEEECCEEEEechhHhChHHHHhcCCCchhhhHHhhcCc
Confidence            4567888 9999999999999999999999999999999964

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.97  E-value=1.6e-10  Score=81.68  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             eEEEEecEEEEcCCCcchHHHHHHc
Q psy4101           5 RHRPQASNVILSAGTIGSPQILMIS   29 (82)
Q Consensus         5 ~~~v~A~eVILsaGa~~sP~lL~~S   29 (82)
                      .++++||+||||||+++||+|||+|
T Consensus       273 ~~~~~A~~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         273 TKVVTADRVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             EEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEeeCHHHhHHHHHhC
Confidence            3578899999999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.75  E-value=2.7e-09  Score=74.93  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=34.2

Q ss_pred             eeEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCC
Q psy4101           4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM   60 (82)
Q Consensus         4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~   60 (82)
                      .+++++||+||||||+++||+|||+|.-.       -++|-  -++ ||+|+.||...
T Consensus       268 ~~~~i~Ak~VVLaAGai~Tp~LLl~S~~~-------g~l~~--~s~~lG~~~~~~l~~  316 (367)
T d1n4wa1         268 ATKEISCRYLFLGAGSLGSTELLVRARDT-------GTLPN--LNSEVGAGWGCVLGK  316 (367)
T ss_dssp             EEEEEEEEEEEECSHHHHHHHHHHHHHHT-------TSSTT--CCTTTTCCBSSCTTT
T ss_pred             eEEEEecCEEEEecchhcCHHHHHhCCCC-------CCCCC--ccHhhcCCccccccc
Confidence            34678899999999999999999999310       01110  123 89988888654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.59  E-value=2.4e-08  Score=68.74  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=36.5

Q ss_pred             eeEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCee
Q psy4101           4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVI   45 (82)
Q Consensus         4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~   45 (82)
                      +.++++|++||||||+++||+||+.|||++........++..
T Consensus       265 ~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~  306 (379)
T d2f5va1         265 DRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPEL  306 (379)
T ss_dssp             CEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSS
T ss_pred             EEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccc
Confidence            457788999999999999999999999999888877766543

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=89.44  E-value=0.084  Score=33.53  Aligned_cols=21  Identities=24%  Similarity=0.205  Sum_probs=16.5

Q ss_pred             ccccCcCCceeEEEecCCcccc
Q psy4101          53 NLQDHVGMAGLTFLVDKPVSIV   74 (82)
Q Consensus        53 nl~DH~~~~~~~~~~~~~~~~~   74 (82)
                      ||||||.+ .+.|..++..+.+
T Consensus         1 NLQDHp~~-~~~f~~~~~~~~~   21 (181)
T d1kdga2           1 NAQDNPSI-NLVFTHPSIDAYE   21 (181)
T ss_dssp             TBBCCCCE-EEEEECTTCCCGG
T ss_pred             CCCCCCCe-eEEEEECCcccHH
Confidence            89999999 7899987654443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.46  E-value=0.46  Score=29.01  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.6

Q ss_pred             eEEEEecEEEEcCCCcchHHHHH
Q psy4101           5 RHRPQASNVILSAGTIGSPQILM   27 (82)
Q Consensus         5 ~~~v~A~eVILsaGa~~sP~lL~   27 (82)
                      ..++.|+.||+|+++..+++||.
T Consensus       262 ~~~~~ad~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         262 RAELSVAQVVLAAPAHATAKLLR  284 (347)
T ss_dssp             EEEEECSEEEECSCHHHHHHHHT
T ss_pred             EEEEECCEEEECCCHHHHHHhcc
Confidence            45678899999999999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=80.40  E-value=0.59  Score=30.27  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=20.7

Q ss_pred             EEEEecEEEEcCCCcchHHHHHHcCC
Q psy4101           6 HRPQASNVILSAGTIGSPQILMISGI   31 (82)
Q Consensus         6 ~~v~A~eVILsaGa~~sP~lL~~SGi   31 (82)
                      .+++|+.||+|+|+. |++++..-|+
T Consensus       189 g~i~a~~VV~aaG~~-s~~l~~~~g~  213 (305)
T d1pj5a2         189 GVIPADIVVSCAGFW-GAKIGAMIGM  213 (305)
T ss_dssp             EEEECSEEEECCGGG-HHHHHHTTTC
T ss_pred             eeEECCEEEEecchh-HHHHHHHcCC
Confidence            357889999999975 8999888765