Psyllid ID: psy4109

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSLH
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccEEEEccccccccccccccccEEcccccEEEEcccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccccEEEHccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKKNAFYTNVArdrevegdlvlsdlgqgvpfragafdGAISISALQWLcnadktshnpaKRLYKFFSSLFACLWSLH
Flexible Loop (DISEMBL)
mkknafytnvardreveGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSLH
Low Complexity Region (SEG)
MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSLH
Disordered region (IsUnstruct)
*****FYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS**
Disordered Region (DISOPRED)
MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA*****NPAKRLYKFFSSLFACLWSLH
Disordered Region (DISEMBL)
MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSLH
Disordered Region (DISPRO)
*******TNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSL*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSLH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
O43709	281	Uncharacterized methyltra	yes	N/A	0.818	0.224	0.714	6e-23
Q55DA6	287	Probable methyltransferas	yes	N/A	0.844	0.226	0.707	1e-22
Q9CY21	281	Uncharacterized methyltra	yes	N/A	0.844	0.231	0.676	3e-21
Q58DP0	281	Uncharacterized methyltra	yes	N/A	0.818	0.224	0.650	4e-20
P25627	275	Putative methyltransferas	yes	N/A	0.779	0.218	0.633	8e-19
Q10162	268	Putative methyltransferas	yes	N/A	0.740	0.212	0.631	6e-17

>sp|O43709|WBS22_HUMAN Uncharacterized methyltransferase WBSCR22 OS=Homo sapiens GN=WBSCR22 PE=1 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 54/63 (85%)

Query: 11  ARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70
           A DRE+EGDL+L D+GQG+PF+ G FDG ISISA+QWLCNA+K S NPAKRLY FF+SLF
Sbjct: 91  AVDREIEGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLF 150

Query: 71  ACL 73
           + L
Sbjct: 151 SVL 153

Methyltransferase that may act on DNA.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q55DA6|WBS22_DICDI Probable methyltransferase WBSCR22 homolog OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
           +VA DREVEGD++L D+GQG PFRAG+FD AISISA+QWLCNA+K+ HNP KRL+ FF S
Sbjct: 86  DVAIDREVEGDVMLRDIGQGFPFRAGSFDAAISISAIQWLCNAEKSHHNPRKRLHTFFQS 145

Query: 69  LFACL 73
           LF  L
Sbjct: 146 LFNVL 150

Probable DNA methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CY21|WBS22_MOUSE Uncharacterized methyltransferase WBSCR22 OS=Mus musculus GN=Wbscr22 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
           + A DR+ EGDL+L D+GQGVPFR G+FDG ISISA+QWLCNA+K S  PA+RLY FFSS
Sbjct: 89  DAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISISAVQWLCNANKKSDVPARRLYCFFSS 148

Query: 69  LFACL 73
           L++ L
Sbjct: 149 LYSAL 153

Methyltransferase that may act on DNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q58DP0|WBS22_BOVIN Uncharacterized methyltransferase WBSCR22 OS=Bos taurus GN=WBSCR22 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/63 (65%), Positives = 51/63 (80%)

Query: 11  ARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70
           A DRE +GD++L D+GQG+PF+ G FD  ISISA+QWLCNA+K S  PAKRLY FFSSL+
Sbjct: 91  ALDRETQGDVILGDMGQGIPFKPGTFDACISISAVQWLCNANKKSDIPAKRLYCFFSSLY 150

Query: 71  ACL 73
           + L
Sbjct: 151 SVL 153

Methyltransferase that may act on DNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P25627|BUD23_YEAST Putative methyltransferase BUD23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 52/60 (86%)

Query: 14  REVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73
           RE+EGDL+L D+G G+PFRAG+FD AISISA+QWLCNAD + ++P +RL +FF++L+A L
Sbjct: 89  RELEGDLMLQDMGTGIPFRAGSFDAAISISAIQWLCNADTSYNDPKQRLMRFFNTLYAAL 148

Putative methyltransferase involved in positioning the proximal bud pole signal.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q10162|YAU6_SCHPO Putative methyltransferase C26A3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26A3.06 PE=4 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 14  REVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70
           +E+EGDL+L D+G GVPFR G FDG ISISA+QWL NADKT + P +RL +FF +L+
Sbjct: 89  QEIEGDLLLCDMGTGVPFRPGTFDGVISISAIQWLLNADKTCNVPQRRLNRFFQTLY 145

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
242024724	277	conserved hypothetical protein [Pediculu	0.844	0.234	0.738	2e-25
340711706	275	PREDICTED: uncharacterized methyltransfe	0.831	0.232	0.781	2e-25
189238660	274	PREDICTED: similar to CG10903 CG10903-PA	0.844	0.237	0.8	3e-25
380023875	275	PREDICTED: uncharacterized methyltransfe	0.831	0.232	0.75	6e-25
350405932	275	PREDICTED: uncharacterized methyltransfe	0.831	0.232	0.765	6e-25
332372630	272	unknown [Dendroctonus ponderosae]	0.844	0.238	0.8	7e-25
383865385	275	PREDICTED: uncharacterized methyltransfe	0.831	0.232	0.734	1e-24
260834245	278	hypothetical protein BRAFLDRAFT_282951 [	0.948	0.262	0.698	2e-24
307194189	276	Uncharacterized methyltransferase WBSCR2	0.844	0.235	0.753	2e-24
66564535	275	PREDICTED: uncharacterized methyltransfe	0.844	0.236	0.738	3e-24

>gi|242024724|ref|XP_002432776.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518285|gb|EEB20038.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/65 (73%), Positives = 61/65 (93%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
           N+A++RE+EGD++LSDLG+G+PFRAG+FDGAISISALQWLCNADK +H P KRLYKFFS+
Sbjct: 86  NIAKEREIEGDVILSDLGEGIPFRAGSFDGAISISALQWLCNADKATHKPTKRLYKFFST 145

Query: 69  LFACL 73
           LF+ +
Sbjct: 146 LFSAM 150

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711706|ref|XP_003394412.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Bombus terrestris]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/64 (78%), Positives = 60/64 (93%)

Query: 10  VARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL 69
           VA +REVEGDL+L D+GQG+PF+AG FDGAISISALQWLCNADK SH+P++RLYKFFS+L
Sbjct: 87  VALEREVEGDLILGDMGQGMPFKAGCFDGAISISALQWLCNADKNSHDPSRRLYKFFSTL 146

Query: 70  FACL 73
           F+CL
Sbjct: 147 FSCL 150

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238660|ref|XP_972432.2| PREDICTED: similar to CG10903 CG10903-PA [Tribolium castaneum] gi|270008360|gb|EFA04808.1| hypothetical protein TcasGA2_TC014857 [Tribolium castaneum]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 61/65 (93%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
           +VA +REVEGD++LSD+GQG PFRAG+FDGAISISALQWLCNADK SHNP +R+YKFFSS
Sbjct: 85  DVALEREVEGDVLLSDMGQGCPFRAGSFDGAISISALQWLCNADKKSHNPVQRIYKFFSS 144

Query: 69  LFACL 73
           L+ACL
Sbjct: 145 LYACL 149

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023875|ref|XP_003695735.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Apis florea]

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/64 (75%), Positives = 61/64 (95%)

Query: 10  VARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL 69
           +A +REV+GDL+L D+GQG+PF+AG+FDGAISISALQWLCNADK +H+P+KRLYKFFS+L
Sbjct: 87  IALEREVDGDLILGDMGQGMPFKAGSFDGAISISALQWLCNADKNTHDPSKRLYKFFSTL 146

Query: 70  FACL 73
           F+CL
Sbjct: 147 FSCL 150

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405932|ref|XP_003487597.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Bombus impatiens]

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/64 (76%), Positives = 60/64 (93%)

Query: 10  VARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL 69
           VA +REV+GDL+L D+GQG+PF+AG FDGAISISALQWLCNADK SH+P++RLYKFFS+L
Sbjct: 87  VALEREVDGDLILGDMGQGMPFKAGCFDGAISISALQWLCNADKNSHDPSRRLYKFFSTL 146

Query: 70  FACL 73
           F+CL
Sbjct: 147 FSCL 150

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372630|gb|AEE61457.1| unknown [Dendroctonus ponderosae]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 60/65 (92%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
           +VA +REVEGDL+L+D+GQG PFRAGAFDGAISISALQWLCNADK+ H P +RLYKFFS+
Sbjct: 85  DVAVEREVEGDLLLTDMGQGCPFRAGAFDGAISISALQWLCNADKSHHRPVQRLYKFFST 144

Query: 69  LFACL 73
           LFACL
Sbjct: 145 LFACL 149

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865385|ref|XP_003708154.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Megachile rotundata]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/64 (73%), Positives = 62/64 (96%)

Query: 10  VARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL 69
           +A +REVEGDL+L D+G+G+PF+AG+FDGAISISALQWLCNAD++SH+P++RLYKFFS+L
Sbjct: 87  IALEREVEGDLILGDMGEGMPFKAGSFDGAISISALQWLCNADRSSHDPSRRLYKFFSTL 146

Query: 70  FACL 73
           F+CL
Sbjct: 147 FSCL 150

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260834245|ref|XP_002612122.1| hypothetical protein BRAFLDRAFT_282951 [Branchiostoma floridae] gi|229297495|gb|EEN68131.1| hypothetical protein BRAFLDRAFT_282951 [Branchiostoma floridae]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/73 (69%), Positives = 62/73 (84%)

Query: 1   MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAK 60
           M  +A   +VA++REVEGDL+LSD+GQG+ FR G FDG ISISA+QWLCNADK SHNP K
Sbjct: 80  MDISANMLDVAQEREVEGDLLLSDMGQGMCFRPGTFDGVISISAIQWLCNADKKSHNPPK 139

Query: 61  RLYKFFSSLFACL 73
           RLYKFFS+L+AC+
Sbjct: 140 RLYKFFSTLYACM 152

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307194189|gb|EFN76606.1| Uncharacterized methyltransferase WBSCR22 [Harpegnathos saltator]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/65 (75%), Positives = 58/65 (89%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
           +VA++RE +GDL+L D+G G+PFRAG FDGA+SISALQWLC ADKTSHNP KRLY FFS+
Sbjct: 86  DVAKERETDGDLILGDMGNGLPFRAGTFDGAVSISALQWLCYADKTSHNPVKRLYCFFST 145

Query: 69  LFACL 73
           LFACL
Sbjct: 146 LFACL 150

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66564535|ref|XP_623810.1| PREDICTED: uncharacterized methyltransferase WBSCR22-like [Apis mellifera]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 61/65 (93%)

Query: 9   NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
            +A +REV+GDL+L D+GQG+PF+AG+FDGAISISALQWLCNADK +H+P+KRLYKFFS+
Sbjct: 86  EIALEREVDGDLILGDMGQGMPFKAGSFDGAISISALQWLCNADKNTHDPSKRLYKFFST 145

Query: 69  LFACL 73
           LF+CL
Sbjct: 146 LFSCL 150

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
FB|FBgn0037543	276	CG10903 [Drosophila melanogast	0.844	0.235	0.676	1.1e-21
UNIPROTKB|Q5ZI10	282	WBSCR22 "Uncharacterized prote	0.844	0.230	0.692	1.1e-21
ZFIN|ZDB-GENE-070410-68	282	wbscr22 "Williams Beuren syndr	0.844	0.230	0.692	1.5e-21
DICTYBASE|DDB_G0269722	287	DDB_G0269722 "methyltransferas	0.844	0.226	0.707	4.9e-21
UNIPROTKB|C9K060	298	WBSCR22 "Uncharacterized methy	0.818	0.211	0.714	4.9e-21
UNIPROTKB|O43709	281	WBSCR22 "Uncharacterized methy	0.818	0.224	0.714	4.9e-21
MGI|MGI:1913388	281	Wbscr22 "Williams Beuren syndr	0.844	0.231	0.676	7.2e-20
RGD|1589742	281	Wbscr22 "Williams Beuren syndr	0.844	0.231	0.676	7.2e-20
RGD|1597085	281	LOC360830 [Rattus norvegicus (	0.844	0.231	0.676	7.2e-20
UNIPROTKB|E2RFK1	349	WBSCR22 "Uncharacterized prote	0.844	0.186	0.661	9.2e-20

FB|FBgn0037543 CG10903 [Drosophila melanogaster (taxid:7227)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 44/65 (67%), Positives = 57/65 (87%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             ++A +REV GD++L D+G+G+PF+ G FDGAISISALQWLCNADK+ HNP KRL KFF++
Sbjct:    87 DIAVEREVAGDVILGDMGEGMPFKPGTFDGAISISALQWLCNADKSYHNPHKRLLKFFTT 146

Query:    69 LFACL 73
             LF+CL
Sbjct:   147 LFSCL 151

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5ZI10 WBSCR22 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             +VA +REVEGDL+L+D+G G+PFR G FDG ISISA+QWLCNADK SH+P KRLY+FFS+
Sbjct:    89 DVAVEREVEGDLLLADMGDGIPFRPGTFDGCISISAVQWLCNADKKSHSPPKRLYRFFST 148

Query:    69 LFACL 73
             L+  L
Sbjct:   149 LYTAL 153

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-070410-68 wbscr22 "Williams Beuren syndrome chromosome region 22" [Danio rerio (taxid:7955)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/65 (69%), Positives = 57/65 (87%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             +VA +REVEGDL+L D+G+G+PFR G FDG ISISALQWLCNADK +H+P KRLY+FFS+
Sbjct:    89 DVALEREVEGDLLLGDMGEGMPFRPGMFDGCISISALQWLCNADKKTHSPPKRLYRFFST 148

Query:    69 LFACL 73
             L++ L
Sbjct:   149 LYSSL 153

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0269722 DDB_G0269722 "methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             +VA DREVEGD++L D+GQG PFRAG+FD AISISA+QWLCNA+K+ HNP KRL+ FF S
Sbjct:    86 DVAIDREVEGDVMLRDIGQGFPFRAGSFDAAISISAIQWLCNAEKSHHNPRKRLHTFFQS 145

Query:    69 LFACL 73
             LF  L
Sbjct:   146 LFNVL 150

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|C9K060 WBSCR22 "Uncharacterized methyltransferase WBSCR22" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 45/63 (71%), Positives = 54/63 (85%)

Query:    11 ARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70
             A DRE+EGDL+L D+GQG+PF+ G FDG ISISA+QWLCNA+K S NPAKRLY FF+SLF
Sbjct:    91 AVDREIEGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLF 150

Query:    71 ACL 73
             + L
Sbjct:   151 SVL 153

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|O43709 WBSCR22 "Uncharacterized methyltransferase WBSCR22" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 45/63 (71%), Positives = 54/63 (85%)

Query:    11 ARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70
             A DRE+EGDL+L D+GQG+PF+ G FDG ISISA+QWLCNA+K S NPAKRLY FF+SLF
Sbjct:    91 AVDREIEGDLLLGDMGQGIPFKPGTFDGCISISAVQWLCNANKKSENPAKRLYCFFASLF 150

Query:    71 ACL 73
             + L
Sbjct:   151 SVL 153

GO:0005634 "nucleus" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913388 Wbscr22 "Williams Beuren syndrome chromosome region 22" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             + A DR+ EGDL+L D+GQGVPFR G+FDG ISISA+QWLCNA+K S  PA+RLY FFSS
Sbjct:    89 DAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISISAVQWLCNANKKSDVPARRLYCFFSS 148

Query:    69 LFACL 73
             L++ L
Sbjct:   149 LYSAL 153

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1589742 Wbscr22 "Williams Beuren syndrome chromosome region 22" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             + A DR+ EGDL+L D+GQGVPFR G+FDG ISISA+QWLCNA+K S  PA+RLY FFSS
Sbjct:    89 DAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISISAVQWLCNANKKSDIPARRLYCFFSS 148

Query:    69 LFACL 73
             L++ L
Sbjct:   149 LYSAL 153

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1597085 LOC360830 [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             + A DR+ EGDL+L D+GQGVPFR G+FDG ISISA+QWLCNA+K S  PA+RLY FFSS
Sbjct:    89 DAALDRDTEGDLLLGDMGQGVPFRPGSFDGCISISAVQWLCNANKKSDIPARRLYCFFSS 148

Query:    69 LFACL 73
             L++ L
Sbjct:   149 LYSAL 153

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RFK1 WBSCR22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/65 (66%), Positives = 54/65 (83%)

Query:     9 NVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68
             + A DR+ EGDL+L D+GQG+PF+ G+FDG ISISA+QWLCNA+K S  PAKRLY FFSS
Sbjct:   154 DAALDRDTEGDLLLGDMGQGIPFKPGSFDGCISISAIQWLCNANKKSDIPAKRLYCFFSS 213

Query:    69 LFACL 73
             L++ L
Sbjct:   214 LYSVL 218

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55DA6	WBS22_DICDI	2, ., 1, ., 1, ., -	0.7076	0.8441	0.2264	yes	N/A
Q58DP0	WBS22_BOVIN	2, ., 1, ., 1, ., -	0.6507	0.8181	0.2241	yes	N/A
P25627	BUD23_YEAST	2, ., 1, ., 1, ., -	0.6333	0.7792	0.2181	yes	N/A
O43709	WBS22_HUMAN	2, ., 1, ., 1, ., -	0.7142	0.8181	0.2241	yes	N/A
Q10162	YAU6_SCHPO	No assigned EC number	0.6315	0.7402	0.2126	yes	N/A
Q9CY21	WBS22_MOUSE	2, ., 1, ., 1, ., -	0.6769	0.8441	0.2313	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
KOG1541|consensus	270		99.9
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.36
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.33
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.28
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.18
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.13
PRK05785	226	hypothetical protein; Provisional	99.12
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.09
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.01
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.96
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.85
PRK06202	232	hypothetical protein; Provisional	98.74
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.74
KOG1540|consensus	296		98.69
PLN02244	340	tocopherol O-methyltransferase	98.67
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.66
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.62
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.6
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.58
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.58
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.57
PLN02336	475	phosphoethanolamine N-methyltransferase	98.57
PLN02490	340	MPBQ/MSBQ methyltransferase	98.56
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.55
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.54
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.51
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.5
PRK06922	677	hypothetical protein; Provisional	98.5
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.49
PRK11207	197	tellurite resistance protein TehB; Provisional	98.45
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.43
PRK08317	241	hypothetical protein; Provisional	98.41
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.39
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.39
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.37
KOG3010|consensus	261		98.25
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.25
PLN02336	475	phosphoethanolamine N-methyltransferase	98.2
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.19
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.17
PRK12335	287	tellurite resistance protein TehB; Provisional	98.07
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.07
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.07
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.07
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.02
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.99
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.92
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.89
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.84
KOG2940|consensus	325		97.83
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.82
TIGR03438	301	probable methyltransferase. This model represents	97.77
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.76
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.69
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.69
KOG1331|consensus	293		97.49
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.48
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.45
PLN03075	296	nicotianamine synthase; Provisional	97.44
KOG4300|consensus	252		97.44
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.43
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.38
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.37
PRK14967	223	putative methyltransferase; Provisional	97.37
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.35
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.35
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.33
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.27
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.27
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.25
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.22
PHA03411	279	putative methyltransferase; Provisional	97.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.19
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.18
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.16
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.12
PRK14968	188	putative methyltransferase; Provisional	97.11
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.03
PRK00811	283	spermidine synthase; Provisional	97.02
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.99
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.97
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.96
KOG1270|consensus	282		96.94
PHA03412	241	putative methyltransferase; Provisional	96.9
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.9
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.89
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.88
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.88
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.87
PRK01581	374	speE spermidine synthase; Validated	96.83
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.75
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.7
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.66
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.53
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.52
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.48
PRK03612	521	spermidine synthase; Provisional	96.44
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	96.43
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.42
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.36
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.29
PRK04457	262	spermidine synthase; Provisional	96.17
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.11
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.1
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.07
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.02
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	95.91
TIGR00438	188	rrmJ cell division protein FtsJ.	95.91
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.9
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.7
KOG2361|consensus	264		95.64
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.52
PLN02366	308	spermidine synthase	95.4
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.36
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.33
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.2
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	95.13
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	94.98
PRK04266	226	fibrillarin; Provisional	94.73
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.72
KOG1975|consensus	389		94.71
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.58
PRK04148	134	hypothetical protein; Provisional	94.56
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	94.39
PLN02672	1082	methionine S-methyltransferase	94.19
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	94.03
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.0
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	93.86
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	93.82
PLN02823	336	spermine synthase	93.81
PRK14902	444	16S rRNA methyltransferase B; Provisional	93.72
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	93.22
PRK07402	196	precorrin-6B methylase; Provisional	93.22
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	93.12
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	93.09
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.91
KOG2352|consensus	482		92.84
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	92.75
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	92.7
COG2890	280	HemK Methylase of polypeptide chain release factor	92.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	92.37
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	92.25
COG4123	248	Predicted O-methyltransferase [General function pr	92.22
PTZ00146	293	fibrillarin; Provisional	92.09
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	92.01
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.0
KOG3420|consensus	185		91.78
KOG3045|consensus	325		91.22
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	90.98
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	90.45
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	90.39
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	90.23
KOG2899|consensus	288		90.12
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	90.01
COG4122	219	Predicted O-methyltransferase [General function pr	89.94
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	89.9
COG2521	287	Predicted archaeal methyltransferase [General func	89.46
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	89.2
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	89.17
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	88.81
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	88.28
KOG1269|consensus	364		87.54
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	87.47
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	86.78
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	85.48
TIGR02691	129	arsC_pI258_fam arsenate reductase (thioredoxin). T	85.45
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	84.43
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	83.76
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	81.94
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	81.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	81.44
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	81.01
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	80.89
KOG3191|consensus	209		80.65
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	80.53
PLN02476	278	O-methyltransferase	80.49
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	80.47

>KOG1541|consensus

Probab=99.90  E-value=4.5e-24  Score=149.97  Aligned_cols=75  Identities=55%  Similarity=1.026  Sum_probs=72.1

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|||+.||++|.++..+++++.+||++++||++|+||++||++++||++|.+++.|+|.+||.+||..||.+|..
T Consensus        78 vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r  152 (270)
T KOG1541|consen   78 VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR  152 (270)
T ss_pred             ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence            699999999999887778999999999999999999999999999999999999999999999999999999863

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.36  E-value=1e-12  Score=86.36  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHhcCC--------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV--------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+|++||++|++|..        +.+++++|+ +.+|+.+++||+|+++++++|+.|+           .++|++++++
T Consensus         3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~d~-----------~~~l~ei~rv   70 (160)
T PLN02232          3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNVVDR-----------LRAMKEMYRV   70 (160)
T ss_pred             EcCCHHHHHHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcCCCH-----------HHHHHHHHHH
Confidence            6999999999976632        358999997 6899999999999999999998653           4677888887


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus        71 Lkp   73 (160)
T PLN02232         71 LKP   73 (160)
T ss_pred             cCc
Confidence            763

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.33  E-value=1.3e-12  Score=92.08  Aligned_cols=62  Identities=19%  Similarity=0.320  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHhcCCC-----CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVE-----GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~-----~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|++|...     .++++||+ +.|||+|++||++.+++.|+++.|.           .+.++++|++|+
T Consensus        81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA-e~LPf~D~sFD~vt~~fglrnv~d~-----------~~aL~E~~RVlK  147 (238)
T COG2226          81 LDISESMLEVAREKLKKKGVQNVEFVVGDA-ENLPFPDNSFDAVTISFGLRNVTDI-----------DKALKEMYRVLK  147 (238)
T ss_pred             EECCHHHHHHHHHHhhccCccceEEEEech-hhCCCCCCccCEEEeeehhhcCCCH-----------HHHHHHHHHhhc
Confidence            59999999999999743     57999996 7899999999999999999999553           345555666664

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.28  E-value=8.2e-12  Score=72.82  Aligned_cols=63  Identities=21%  Similarity=0.234  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHhcCCC--CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVE--GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++...  ..+.++|+ +.+||++++||.|+++.+++|+++           ..+++++++++|+.
T Consensus        25 ~D~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~~~-----------~~~~l~e~~rvLk~   89 (95)
T PF08241_consen   25 IDISEEMLEQARKRLKNEGVSFRQGDA-EDLPFPDNSFDVVFSNSVLHHLED-----------PEAALREIYRVLKP   89 (95)
T ss_dssp             EES-HHHHHHHHHHTTTSTEEEEESBT-TSSSS-TT-EEEEEEESHGGGSSH-----------HHHHHHHHHHHEEE
T ss_pred             EeCCHHHHHHHHhcccccCchheeehH-HhCccccccccccccccceeeccC-----------HHHHHHHHHHHcCc
Confidence            59999999999998743  35999997 689999999999999999999933           46788888888763

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.18  E-value=1.8e-11  Score=85.31  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|++|..     +.+++++|+ +.+||++++||+|++.+.++.++|+           .+.+++++++|+
T Consensus        78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglrn~~d~-----------~~~l~E~~RVLk  144 (233)
T PF01209_consen   78 VDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLRNFPDR-----------ERALREMYRVLK  144 (233)
T ss_dssp             EES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GGG-SSH-----------HHHHHHHHHHEE
T ss_pred             ecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHHhhCCH-----------HHHHHHHHHHcC
Confidence            5999999999998842     468999996 7899999999999999999888553           346777777775

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.13  E-value=7.4e-11  Score=82.89  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHhcCC--------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV--------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+|++|++.|++|..        +.+++++|+ +.+||.+++||+|+++.++||+.|+           .++++++++.
T Consensus       104 vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~d~-----------~~~l~ei~rv  171 (261)
T PLN02233        104 LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVVDR-----------LKAMQEMYRV  171 (261)
T ss_pred             EECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCCCH-----------HHHHHHHHHH
Confidence            5999999999987632        357899997 6899999999999999999998653           4577777777


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       172 Lk  173 (261)
T PLN02233        172 LK  173 (261)
T ss_pred             cC
Confidence            75

>PRK05785 hypothetical protein; Provisional

Probab=99.12  E-value=1.4e-10  Score=80.18  Aligned_cols=59  Identities=20%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|+++.   ..+++|+ +.+||.+++||+|+++++++|+.|+           .+.+++++++|+
T Consensus        80 vD~S~~Ml~~a~~~~---~~~~~d~-~~lp~~d~sfD~v~~~~~l~~~~d~-----------~~~l~e~~RvLk  138 (226)
T PRK05785         80 LDYAENMLKMNLVAD---DKVVGSF-EALPFRDKSFDVVMSSFALHASDNI-----------EKVIAEFTRVSR  138 (226)
T ss_pred             ECCCHHHHHHHHhcc---ceEEech-hhCCCCCCCEEEEEecChhhccCCH-----------HHHHHHHHHHhc
Confidence            699999999999874   4688997 6899999999999999999998654           335555555554

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.09  E-value=2e-10  Score=79.13  Aligned_cols=62  Identities=21%  Similarity=0.348  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.....++++|+ +.+|+.+++||+|+|+.++||+.|+           ...++++++.|+
T Consensus        70 ~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~d~-----------~~~l~~~~~~Lk  131 (251)
T PRK10258         70 LDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWCGNL-----------STALRELYRVVR  131 (251)
T ss_pred             EECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhcCCH-----------HHHHHHHHHHcC
Confidence            5999999999999876667899997 6799999999999999999998654           345666666665

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.01  E-value=3.1e-10  Score=68.66  Aligned_cols=64  Identities=20%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|+++.    ...+++++|+ ..+|+.+++||.|+++ .+++|+         .++.+.++|+++++.|+
T Consensus        30 vD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~~~---------~~~~~~~ll~~~~~~l~   98 (101)
T PF13649_consen   30 VDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLHHL---------SPEELEALLRRIARLLR   98 (101)
T ss_dssp             EES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGGGS---------SHHHHHHHHHHHHHTEE
T ss_pred             EECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccCCC---------CHHHHHHHHHHHHHHhC
Confidence            599999999999886    4679999998 5799999999999995 558775         35678889999888765

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.96  E-value=1.7e-09  Score=73.81  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.+..++.++|+. . |+.+++||+|+++.+++|+         ++..+.+++++++++++
T Consensus        73 iDiS~~~l~~A~~~~~~~~~~~~d~~-~-~~~~~sfD~V~~~~vL~hl---------~p~~~~~~l~el~r~~~  135 (204)
T TIGR03587        73 VEINEYAVEKAKAYLPNINIIQGSLF-D-PFKDNFFDLVLTKGVLIHI---------NPDNLPTAYRELYRCSN  135 (204)
T ss_pred             EECCHHHHHHHHhhCCCCcEEEeecc-C-CCCCCCEEEEEECChhhhC---------CHHHHHHHHHHHHhhcC
Confidence            69999999999998777789999974 4 8999999999999999765         34678889999998875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.85  E-value=3.6e-09  Score=73.40  Aligned_cols=59  Identities=20%  Similarity=0.203  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|++++  .+++++|+ +.++ .+++||+|+|+.++||+.|+           .++++++++.|+
T Consensus        59 vD~s~~~~~~a~~~~--~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~~~Lk  117 (255)
T PRK14103         59 LDSSPEMVAAARERG--VDARTGDV-RDWK-PKPDTDVVVSNAALQWVPEH-----------ADLLVRWVDELA  117 (255)
T ss_pred             EECCHHHHHHHHhcC--CcEEEcCh-hhCC-CCCCceEEEEehhhhhCCCH-----------HHHHHHHHHhCC
Confidence            699999999998875  67899997 5565 56899999999999999653           346777777765

>PRK06202 hypothetical protein; Provisional

Probab=98.74  E-value=2.6e-08  Score=68.12  Aligned_cols=64  Identities=14%  Similarity=0.051  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..  +.++.++|. +.+|+.+++||+|+|+.++||+.++         .+.++++++++.++
T Consensus        94 vD~s~~~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~~~lhh~~d~---------~~~~~l~~~~r~~~  159 (232)
T PRK06202         94 IDPDPRAVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSNHFLHHLDDA---------EVVRLLADSAALAR  159 (232)
T ss_pred             EcCCHHHHHHHHhccccCCCeEEEEec-ccccccCCCccEEEECCeeecCChH---------HHHHHHHHHHHhcC
Confidence            6999999999998852  356777775 5688888999999999999998542         35677888877664

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.74  E-value=1.8e-08  Score=69.56  Aligned_cols=61  Identities=23%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..+.+++.+|+ ..++ .+++||.|+|+.++||+.|.           .+++++++++|+
T Consensus        61 vD~s~~~i~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~~~Lk  121 (258)
T PRK01683         61 IDSSPAMLAEARSRLPDCQFVEADI-ASWQ-PPQALDLIFANASLQWLPDH-----------LELFPRLVSLLA  121 (258)
T ss_pred             EECCHHHHHHHHHhCCCCeEEECch-hccC-CCCCccEEEEccChhhCCCH-----------HHHHHHHHHhcC
Confidence            5999999999999987788999997 4454 45699999999999999653           457788887776

>KOG1540|consensus

Probab=98.69  E-value=2.4e-08  Score=71.87  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHhcC---CC-----CcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDRE---VE-----GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~-----~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +||||+||+.+++|.   +.     ..++.+|+ +.|||.+++||+....+.|..+.+.
T Consensus       136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA-E~LpFdd~s~D~yTiafGIRN~th~  193 (296)
T KOG1540|consen  136 LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA-EDLPFDDDSFDAYTIAFGIRNVTHI  193 (296)
T ss_pred             EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc-ccCCCCCCcceeEEEecceecCCCH
Confidence            599999999998886   21     46889996 8999999999999999999888554

>PLN02244 tocopherol O-methyltransferase

Probab=98.67  E-value=3.4e-08  Score=71.73  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.      ...+++++|+ ..+||.+++||+|+|+.+++|+.|.           .++|++++++|+
T Consensus       147 vD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~~~~h~~d~-----------~~~l~e~~rvLk  214 (340)
T PLN02244        147 ITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSMESGEHMPDK-----------RKFVQELARVAA  214 (340)
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECCchhccCCH-----------HHHHHHHHHHcC
Confidence            599999999988652      2368899997 6799999999999999999988653           467888888876

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.66  E-value=3e-08  Score=70.17  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|-|++||+.|+++.+..++.++|+.+ .- .+..+|.++||.+|||++|-
T Consensus        60 iDsS~~Mla~Aa~rlp~~~f~~aDl~~-w~-p~~~~dllfaNAvlqWlpdH  108 (257)
T COG4106          60 IDSSPAMLAKAAQRLPDATFEEADLRT-WK-PEQPTDLLFANAVLQWLPDH  108 (257)
T ss_pred             ccCCHHHHHHHHHhCCCCceecccHhh-cC-CCCccchhhhhhhhhhcccc
Confidence            689999999999999999999999853 32 46789999999999999763

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.62  E-value=6.6e-08  Score=67.44  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.+|+.+++||.|+++.+++|+.+.           .+.|+++++.|+
T Consensus       108 vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v~~~~~d~-----------~~~l~~~~r~Lk  174 (272)
T PRK11873        108 VDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCVINLSPDK-----------ERVFKEAFRVLK  174 (272)
T ss_pred             ECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCcccCCCCH-----------HHHHHHHHHHcC
Confidence            699999999999863     2457888997 6799999999999999999987543           356777777775

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.60  E-value=3.7e-08  Score=69.57  Aligned_cols=65  Identities=14%  Similarity=0.039  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHhcC--------------------------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE--------------------------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--------------------------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++||+.|++..                                ...++.++|+. ..|+.++.||+|+|..+++|+
T Consensus       138 ~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~-~~~~~~~~fD~I~crnvl~yf  216 (264)
T smart00138      138 TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL-AESPPLGDFDLIFCRNVLIYF  216 (264)
T ss_pred             EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC-CCCCccCCCCEEEechhHHhC
Confidence            599999999998752                                02478889985 577778999999999999988


Q ss_pred             cccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109          49 CNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus        49 ~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      .+         ...++.+++++++|+.
T Consensus       217 ~~---------~~~~~~l~~l~~~L~p  234 (264)
T smart00138      217 DE---------PTQRKLLNRFAEALKP  234 (264)
T ss_pred             CH---------HHHHHHHHHHHHHhCC
Confidence            43         3456788888888863

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.58  E-value=9.2e-08  Score=63.96  Aligned_cols=48  Identities=23%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCC-CCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGV-PFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~l-Pf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|+|++|++.|++++  .+++++|+.+.+ |+.+++||.|+++.++||+.|
T Consensus        42 iD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d   90 (194)
T TIGR02081        42 IEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN   90 (194)
T ss_pred             EeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence            599999999998775  568889975445 478899999999999999854

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.58  E-value=4e-08  Score=71.60  Aligned_cols=62  Identities=16%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      .+.+++++|+ +.+|+.+++||+|+++.+++|+.|+           ..+++.+++.|+
T Consensus       159 ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~vLeHv~d~-----------~~~L~~l~r~Lk  226 (322)
T PLN02396        159 VDAVDKNVKIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLEVIEHVANP-----------AEFCKSLSALTI  226 (322)
T ss_pred             EeCCHHHHHHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhhHHHhcCCH-----------HHHHHHHHHHcC
Confidence            699999999998763      1357899997 6799989999999999999999764           246666766664

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.57  E-value=1.2e-07  Score=63.51  Aligned_cols=62  Identities=23%  Similarity=0.267  Sum_probs=49.7

Q ss_pred             CCCCHHHHHHHHhcCC-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.++++.. +..++.+|+ +.+|+.+++||+|+++.++||+.++           .+++.++++.|+
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~~~~-----------~~~l~~~~~~L~  126 (240)
T TIGR02072        64 LDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWCDDL-----------SQALSELARVLK  126 (240)
T ss_pred             EeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhccCH-----------HHHHHHHHHHcC
Confidence            5999999999988763 457899998 5789999999999999999998553           345666666554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.57  E-value=1.1e-07  Score=71.12  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..    ..++.++|+ ..+|+++++||+|+|..+++|+.|+           .++|++++++|+
T Consensus       295 vDiS~~~l~~A~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~I~s~~~l~h~~d~-----------~~~l~~~~r~Lk  360 (475)
T PLN02336        295 IDLSVNMISFALERAIGRKCSVEFEVADC-TKKTYPDNSFDVIYSRDTILHIQDK-----------PALFRSFFKWLK  360 (475)
T ss_pred             EECCHHHHHHHHHHhhcCCCceEEEEcCc-ccCCCCCCCEEEEEECCcccccCCH-----------HHHHHHHHHHcC
Confidence            5999999999987642    357889997 5688889999999999999999653           357777777775

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.56  E-value=9.8e-08  Score=70.17  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHHhcC--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.  .+.+++.+|+ +.+|+.+++||.|+++.+++++.++           .+.|+++++.|+
T Consensus       143 VD~S~~mL~~A~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~~d~-----------~~~L~e~~rvLk  206 (340)
T PLN02490        143 LDQSPHQLAKAKQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYWPDP-----------QRGIKEAYRVLK  206 (340)
T ss_pred             EECCHHHHHHHHHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhCCCH-----------HHHHHHHHHhcC
Confidence            599999999999875  2468899997 6799999999999999999998654           235677777665

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.55  E-value=1.4e-07  Score=60.65  Aligned_cols=61  Identities=18%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+ +|  +. +.||.|++..+++|+.++           ..+++++++.|
T Consensus        34 vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I~~~~~l~~~~~~-----------~~~l~~~~~~l  100 (152)
T PF13847_consen   34 VDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDIIISNGVLHHFPDP-----------EKVLKNIIRLL  100 (152)
T ss_dssp             EESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEEEEESTGGGTSHH-----------HHHHHHHHHHE
T ss_pred             EECcHHHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEEEEcCchhhccCH-----------HHHHHHHHHHc
Confidence            599999999999852     246899999854 88  66 899999999999998654           35666766665


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       101 k  101 (152)
T PF13847_consen  101 K  101 (152)
T ss_dssp             E
T ss_pred             C
Confidence            4

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.54  E-value=6.1e-08  Score=67.34  Aligned_cols=62  Identities=11%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCC-CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGV-PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~l-Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++..      +.+++++|+. .+ ++.+++||+|++..+++|+.++           ..+++++++.|
T Consensus        72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~vl~~~~~~-----------~~~l~~~~~~L  139 (255)
T PRK11036         72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAVLEWVADP-----------KSVLQTLWSVL  139 (255)
T ss_pred             EECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhHHHhhCCH-----------HHHHHHHHHHc
Confidence            6999999999987742      3478899974 45 4678999999999999999654           24666777766


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       140 k  140 (255)
T PRK11036        140 R  140 (255)
T ss_pred             C
Confidence            5

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.51  E-value=2.5e-07  Score=65.09  Aligned_cols=64  Identities=20%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..   ...+.++|+ ...|+.+++||+|++..+++|+.         .+...++|+++++.|+
T Consensus        81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~-~~~~~~~~~FD~V~s~~~l~h~~---------~~d~~~~l~~i~r~Lk  147 (263)
T PTZ00098         81 VDICEKMVNIAKLRNSDKNKIEFEANDI-LKKDFPENTFDMIYSRDAILHLS---------YADKKKLFEKCYKWLK  147 (263)
T ss_pred             EECCHHHHHHHHHHcCcCCceEEEECCc-ccCCCCCCCeEEEEEhhhHHhCC---------HHHHHHHHHHHHHHcC
Confidence            5999999999998753   357888997 56899999999999998876652         3345678888888876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.50  E-value=1.7e-07  Score=63.55  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     ...+++++|+ ..+|+.+++||.|+++.+++|+.+.           ..+++++++.|+
T Consensus        76 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~~~-----------~~~l~~~~~~Lk  142 (231)
T TIGR02752        76 LDFSENMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGFGLRNVPDY-----------MQVLREMYRVVK  142 (231)
T ss_pred             EECCHHHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEecccccCCCH-----------HHHHHHHHHHcC
Confidence            599999999998764     2357899997 5688989999999999999998543           245556666554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK06922 hypothetical protein; Provisional

Probab=98.50  E-value=2.4e-07  Score=73.21  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=57.0

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhccc--CCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNA--DKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~--~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+|++|++.|+++.    ...+++++|+ ..+|  |.+++||.|+++.++||+.+.  ....+-..+.+.++|++++++
T Consensus       448 IDIS~~MLe~Ararl~~~g~~ie~I~gDa-~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV  526 (677)
T PRK06922        448 IDISENVIDTLKKKKQNEGRSWNVIKGDA-INLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV  526 (677)
T ss_pred             EECCHHHHHHHHHHhhhcCCCeEEEEcch-HhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence            599999999998764    2346788997 4688  889999999999999987541  112223457888999999999


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus       527 LKP  529 (677)
T PRK06922        527 LKP  529 (677)
T ss_pred             cCC
Confidence            874

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.49  E-value=4.8e-08  Score=67.85  Aligned_cols=63  Identities=11%  Similarity=0.141  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..      ..+++++|+ ..+|+.  .||+|++++++||+.+         ...+.++++++++|+
T Consensus        88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~-~~~~~~--~~D~vv~~~~l~~l~~---------~~~~~~l~~i~~~Lk  155 (247)
T PRK15451         88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-RDIAIE--NASMVVLNFTLQFLEP---------SERQALLDKIYQGLN  155 (247)
T ss_pred             EeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh-hhCCCC--CCCEEehhhHHHhCCH---------HHHHHHHHHHHHhcC
Confidence            6999999999998742      358899997 567764  4999999999998842         235678899999886


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       156 p  156 (247)
T PRK15451        156 P  156 (247)
T ss_pred             C
Confidence            3

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.45  E-value=4.1e-07  Score=61.39  Aligned_cols=64  Identities=20%  Similarity=0.264  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++.     .+.++.++|+ ..+++ +++||+|+|+.++||+.         +..+..+++++++.|+.
T Consensus        58 vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~I~~~~~~~~~~---------~~~~~~~l~~i~~~Lkp  126 (197)
T PRK11207         58 WDKNPMSIANLERIKAAENLDNLHTAVVDL-NNLTF-DGEYDFILSTVVLMFLE---------AKTIPGLIANMQRCTKP  126 (197)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCcceEEecCh-hhCCc-CCCcCEEEEecchhhCC---------HHHHHHHHHHHHHHcCC
Confidence            599999999988653     2356788897 45676 46799999999998872         34567899999988863

>TIGR00740 methyltransferase, putative

Probab=98.43  E-value=1.2e-07  Score=65.09  Aligned_cols=62  Identities=13%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..      +.+++++|+ ..+|+.  .+|+|++++++||+.+         +....++++++++|+
T Consensus        85 vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~--~~d~v~~~~~l~~~~~---------~~~~~~l~~i~~~Lk  152 (239)
T TIGR00740        85 IDNSQPMVERCRQHIAAYHSEIPVEILCNDI-RHVEIK--NASMVILNFTLQFLPP---------EDRIALLTKIYEGLN  152 (239)
T ss_pred             EeCCHHHHHHHHHHHHhcCCCCCeEEEECCh-hhCCCC--CCCEEeeecchhhCCH---------HHHHHHHHHHHHhcC
Confidence            5999999999987731      347899998 568765  4899999999999843         234568888888875

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08317 hypothetical protein; Provisional

Probab=98.41  E-value=6.7e-07  Score=59.60  Aligned_cols=62  Identities=24%  Similarity=0.400  Sum_probs=48.7

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    ...+++.+|+ +.+|+.+++||.|++..+++|+.++           ..+++++++.|+
T Consensus        50 ~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~-----------~~~l~~~~~~L~  115 (241)
T PRK08317         50 IDRSEAMLALAKERAAGLGPNVEFVRGDA-DGLPFPDGSFDAVRSDRVLQHLEDP-----------ARALAEIARVLR  115 (241)
T ss_pred             EeCCHHHHHHHHHHhhCCCCceEEEeccc-ccCCCCCCCceEEEEechhhccCCH-----------HHHHHHHHHHhc
Confidence            589999999998872    3457888997 5788999999999999999998553           335666666654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.39  E-value=5.4e-07  Score=63.29  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.++..+.++|+ ..+||.+++||.|+++.+
T Consensus       118 iD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~~~  160 (272)
T PRK11088        118 LDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIRIYA  160 (272)
T ss_pred             ECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEEecC
Confidence            5999999999999887888999997 579999999999999864

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.39  E-value=1.3e-08  Score=60.89  Aligned_cols=63  Identities=16%  Similarity=0.178  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHhcCCC-----CcEEEccCCCCCCC-CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVE-----GDLVLSDLGQGVPF-RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~-----~~~~~~D~~~~lPf-~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|++|...     ...+..+..+.... ..++||.|+++.++||+++           ++.+++++++.|+
T Consensus        26 ~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~-----------~~~~l~~~~~~L~   94 (99)
T PF08242_consen   26 VDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLED-----------IEAVLRNIYRLLK   94 (99)
T ss_dssp             EESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S------------HHHHHHHHTTT-T
T ss_pred             EECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhh-----------HHHHHHHHHHHcC
Confidence            59999999888877521     12343333221111 2369999999999999933           3567777777665

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.37  E-value=5.1e-07  Score=54.53  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=48.0

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.      .+.+++++|+ ...+-..+.||+|++.. +++++..        .+..+++++++++.|
T Consensus        31 vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~--------~~~~~~~l~~~~~~L  101 (112)
T PF12847_consen   31 VDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTLHFLLP--------LDERRRVLERIRRLL  101 (112)
T ss_dssp             EESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSGGGCCH--------HHHHHHHHHHHHHHE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCccccccc--------hhHHHHHHHHHHHhc
Confidence            599999999999886      3458899997 32333455699999999 5554421        266778888888877


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       102 ~  102 (112)
T PF12847_consen  102 K  102 (112)
T ss_dssp             E
T ss_pred             C
Confidence            5

...

>KOG3010|consensus

Probab=98.25  E-value=1.2e-06  Score=62.52  Aligned_cols=62  Identities=16%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHhcCCCC----cEEEccCCCCCCCC--CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEG----DLVLSDLGQGVPFR--AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~----~~~~~D~~~~lPf~--~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|++..+..    ...-.+ .+..|+.  ++|.|.|++..++||++            |.+|++.+++.|+
T Consensus        61 tD~s~~mL~~a~k~~~~~y~~t~~~ms~-~~~v~L~g~e~SVDlI~~Aqa~HWFd------------le~fy~~~~rvLR  127 (261)
T KOG3010|consen   61 TDVSEAMLKVAKKHPPVTYCHTPSTMSS-DEMVDLLGGEESVDLITAAQAVHWFD------------LERFYKEAYRVLR  127 (261)
T ss_pred             ecCCHHHHHHhhcCCCcccccCCccccc-cccccccCCCcceeeehhhhhHHhhc------------hHHHHHHHHHHcC
Confidence            599999999998776422    111112 1345665  99999999999999994            4689999999998


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      +
T Consensus       128 k  128 (261)
T KOG3010|consen  128 K  128 (261)
T ss_pred             C
Confidence            6

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.25  E-value=1.4e-06  Score=63.16  Aligned_cols=61  Identities=15%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             CCCCHHHHHHHHh--cC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARD--RE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~--r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|+.+++.  +.    .+..++.+|+ +.+|+ +++||.|+|+++++|+.++           ..+|++++++|+
T Consensus       151 iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~-e~lp~-~~~FD~V~s~~vl~H~~dp-----------~~~L~~l~~~Lk  217 (322)
T PRK15068        151 IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI-EQLPA-LKAFDTVFSMGVLYHRRSP-----------LDHLKQLKDQLV  217 (322)
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH-HHCCC-cCCcCEEEECChhhccCCH-----------HHHHHHHHHhcC
Confidence            6999999986542  21    2467899997 67998 8999999999999987543           357788888775

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.20  E-value=3e-06  Score=63.35  Aligned_cols=66  Identities=12%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCC-CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQ-GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~-~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.++++.   .+..++++|+.. .+|+.+++||.|+++.+++|+.+         +.+.++++++++.|+.
T Consensus        65 iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~---------~~~~~~l~~~~r~Lk~  134 (475)
T PLN02336         65 LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSD---------KEVENLAERMVKWLKV  134 (475)
T ss_pred             EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCH---------HHHHHHHHHHHHhcCC
Confidence            599999999987543   246789999742 57888999999999999998843         3456788888888763

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.19  E-value=4e-06  Score=56.46  Aligned_cols=64  Identities=14%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++.    ....+.++|+ ...|+ +++||.|+++.+++|+         +...+..+++++++.|+.
T Consensus        58 iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~I~~~~~~~~~---------~~~~~~~~l~~~~~~Lkp  125 (195)
T TIGR00477        58 WDHNPASIASVLDMKARENLPLRTDAYDI-NAAAL-NEDYDFIFSTVVFMFL---------QAGRVPEIIANMQAHTRP  125 (195)
T ss_pred             EECCHHHHHHHHHHHHHhCCCceeEeccc-hhccc-cCCCCEEEEecccccC---------CHHHHHHHHHHHHHHhCC
Confidence            599999999987553    2356777786 45665 4679999999999876         234667889999988864

Part of a tellurite-reducing operon tehA and tehB

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.17  E-value=2.1e-06  Score=59.13  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~   67 (77)
                      ++++++.+..|-+|+  ..++++|+.+.|+ |+|++||.||.+.++|.+       +.|.+.|++++.
T Consensus        42 vEid~~~v~~cv~rG--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-------~~P~~vL~EmlR  100 (193)
T PF07021_consen   42 VEIDPDNVAACVARG--VSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-------RRPDEVLEEMLR  100 (193)
T ss_pred             EecCHHHHHHHHHcC--CCEEECCHHHhHhhCCCCCccEEehHhHHHhH-------hHHHHHHHHHHH
Confidence            578999999999998  5589999988897 999999999999999998       556777777753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.07  E-value=7.5e-06  Score=58.04  Aligned_cols=64  Identities=13%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++.    ...++..+|+ ...++ +++||.|+|+.+++++.         ++.+..+++++++.|+.
T Consensus       148 vD~s~~ai~~~~~~~~~~~l~v~~~~~D~-~~~~~-~~~fD~I~~~~vl~~l~---------~~~~~~~l~~~~~~Lkp  215 (287)
T PRK12335        148 VDINQQSLENLQEIAEKENLNIRTGLYDI-NSASI-QEEYDFILSTVVLMFLN---------RERIPAIIKNMQEHTNP  215 (287)
T ss_pred             EECCHHHHHHHHHHHHHcCCceEEEEech-hcccc-cCCccEEEEcchhhhCC---------HHHHHHHHHHHHHhcCC
Confidence            699999999987653    3456788887 44555 78899999999998772         35677888998888864

>TIGR00452 methyltransferase, putative

Probab=98.07  E-value=5.5e-06  Score=60.32  Aligned_cols=62  Identities=13%  Similarity=0.045  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHh--cC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARD--RE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~--r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|+.+++.  +.    ....+..+|+ +.+|+. ++||+|+|+++++|+.++           ..+|++++++|+
T Consensus       150 iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i-e~lp~~-~~FD~V~s~gvL~H~~dp-----------~~~L~el~r~Lk  216 (314)
T TIGR00452       150 IDPTVLFLCQFEAVRKLLDNDKRAILEPLGI-EQLHEL-YAFDTVFSMGVLYHRKSP-----------LEHLKQLKHQLV  216 (314)
T ss_pred             EcCCHHHHHHHHHHHHHhccCCCeEEEECCH-HHCCCC-CCcCEEEEcchhhccCCH-----------HHHHHHHHHhcC
Confidence            6999999987532  21    2346777887 568864 489999999999998554           347788888776


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       217 p  217 (314)
T TIGR00452       217 I  217 (314)
T ss_pred             C
Confidence            3

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.07  E-value=5.8e-06  Score=55.81  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..      ..+++.+|+. ..|+ +++||.|+++.+++|+.++           ..+|+++++.|+
T Consensus        29 id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~~-~~~fD~I~~~~~l~~~~~~-----------~~~l~~~~~~Lk   95 (224)
T smart00828       29 YTISPEQAEVGRERIRALGLQGRIRIFYRDSA-KDPF-PDTYDLVFGFEVIHHIKDK-----------MDLFSNISRHLK   95 (224)
T ss_pred             EECCHHHHHHHHHHHHhcCCCcceEEEecccc-cCCC-CCCCCEeehHHHHHhCCCH-----------HHHHHHHHHHcC
Confidence            5899999999988741      2478889974 4566 4589999999999988442           468888888775

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.07  E-value=5.8e-06  Score=56.02  Aligned_cols=61  Identities=21%  Similarity=0.295  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..      ...+.++|+ ..+|   ++||.|+++.+++|+         |.+.+...++++++.++
T Consensus        83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~---~~fD~ii~~~~l~~~---------~~~~~~~~l~~i~~~~~  149 (219)
T TIGR02021        83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDL-LSLC---GEFDIVVCMDVLIHY---------PASDMAKALGHLASLTK  149 (219)
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECCh-hhCC---CCcCEEEEhhHHHhC---------CHHHHHHHHHHHHHHhC
Confidence            5999999999998752      357888997 4565   789999999988765         23456667777776554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.02  E-value=1.2e-05  Score=53.45  Aligned_cols=49  Identities=16%  Similarity=0.314  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|+|++|++.++++..   ..+++.+|+ ..+|+.+++||+|+++.++++..+
T Consensus        70 iD~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~i~~~~~~~~~~~  121 (223)
T TIGR01934        70 VDFSSEMLEVAKKKSELPLNIEFIQADA-EALPFEDNSFDAVTIAFGLRNVTD  121 (223)
T ss_pred             EECCHHHHHHHHHHhccCCCceEEecch-hcCCCCCCcEEEEEEeeeeCCccc
Confidence            5899999999998753   467889998 468888899999999999887744

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.99  E-value=1.6e-05  Score=53.27  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|+|++|++.|+++.      ....++.+|+ ..+|+.+++||+|+++.+++++.+
T Consensus        82 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~I~~~~~l~~~~~  136 (239)
T PRK00216         82 LDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-EALPFPDNSFDAVTIAFGLRNVPD  136 (239)
T ss_pred             EeCCHHHHHHHHHhhcccccccCeEEEeccc-ccCCCCCCCccEEEEecccccCCC
Confidence            589999999998874      2357888997 568888899999999999988754

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.92  E-value=1.7e-05  Score=54.97  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.-|+.||+|..   .+++.++|+.+  ..+++.||.|+.+-++.|+.+        .+.|++++.++.+.|.
T Consensus        71 vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~--~~P~~~FDLIV~SEVlYYL~~--------~~~L~~~l~~l~~~L~  137 (201)
T PF05401_consen   71 VDISPRALARARERLAGLPHVEWIQADVPE--FWPEGRFDLIVLSEVLYYLDD--------AEDLRAALDRLVAALA  137 (201)
T ss_dssp             EES-HHHHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGSSS--------HHHHHHHHHHHHHTEE
T ss_pred             EeCCHHHHHHHHHhcCCCCCeEEEECcCCC--CCCCCCeeEEEEehHhHcCCC--------HHHHHHHHHHHHHHhC
Confidence            5999999999999963   46899999854  457899999999999999954        3567778787777664

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.89  E-value=4.1e-06  Score=56.76  Aligned_cols=71  Identities=14%  Similarity=0.050  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.+|  +.+++||.|+++....|.....   +........+++++++.|
T Consensus        70 VD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~---~~~~~~~~~~l~~i~~~L  146 (202)
T PRK00121         70 IEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRH---HKRRLVQPEFLALYARKL  146 (202)
T ss_pred             EEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccc---cccccCCHHHHHHHHHHc
Confidence            699999999998753     245789999624566  7889999999988777764321   111122466788888877


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       147 k  147 (202)
T PRK00121        147 K  147 (202)
T ss_pred             C
Confidence            5

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.84  E-value=7.9e-06  Score=51.58  Aligned_cols=57  Identities=25%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.   +  ......-+. ...++.+++||+|+|+.+|+|+.|+           ..+++++++.|+
T Consensus        50 ~D~~~~~~~~---~--~~~~~~~~~-~~~~~~~~~fD~i~~~~~l~~~~d~-----------~~~l~~l~~~Lk  106 (161)
T PF13489_consen   50 VDISPQMIEK---R--NVVFDNFDA-QDPPFPDGSFDLIICNDVLEHLPDP-----------EEFLKELSRLLK  106 (161)
T ss_dssp             EESSHHHHHH---T--TSEEEEEEC-HTHHCHSSSEEEEEEESSGGGSSHH-----------HHHHHHHHHCEE
T ss_pred             EECCHHHHhh---h--hhhhhhhhh-hhhhccccchhhHhhHHHHhhcccH-----------HHHHHHHHHhcC
Confidence            5889999887   2  122222232 3456789999999999999999653           467777777664

...

>KOG2940|consensus

Probab=97.83  E-value=1.1e-05  Score=58.02  Aligned_cols=50  Identities=22%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|-|-+|++.|+.-.   .....+++| .+.|||.+++||.++|+..+||.-|+
T Consensus       101 ~DtS~~M~~s~~~~qdp~i~~~~~v~D-EE~Ldf~ens~DLiisSlslHW~NdL  153 (325)
T KOG2940|consen  101 MDTSYDMIKSCRDAQDPSIETSYFVGD-EEFLDFKENSVDLIISSLSLHWTNDL  153 (325)
T ss_pred             eecchHHHHHhhccCCCceEEEEEecc-hhcccccccchhhhhhhhhhhhhccC
Confidence            589999999998653   234778899 58999999999999999999999764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.82  E-value=6.1e-05  Score=49.63  Aligned_cols=72  Identities=22%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCC----------CCChHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKT----------SHNPAKRLYKFF   66 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~----------~~~p~~~l~~~~   66 (77)
                      +|+|++|++.|+++.    ...+++.+|..+ .+  +++||.|+++..++...+..+.          +......+.+++
T Consensus        47 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (179)
T TIGR00537        47 TDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFL  123 (179)
T ss_pred             EECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHH
Confidence            599999999998763    345778888743 32  5689999999887766543221          122345578889


Q ss_pred             HHHHHHHhh
Q psy4109          67 SSLFACLWS   75 (77)
Q Consensus        67 ~~l~~~L~~   75 (77)
                      ..+++.|+.
T Consensus       124 ~~~~~~Lk~  132 (179)
T TIGR00537       124 DELPEILKE  132 (179)
T ss_pred             HhHHHhhCC
Confidence            998888863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03438 probable methyltransferase

Probab=97.77  E-value=5.3e-05  Score=54.25  Aligned_cols=66  Identities=11%  Similarity=-0.002  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHhcC----CC--CcEEEccCCCCCCCCCC----ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----VE--GDLVLSDLGQGVPFRAG----AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~--~~~~~~D~~~~lPf~~~----sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|++||+.|+++.    +.  ...+++|+.+.+++...    ...++++.++++++         ++.....+|++++
T Consensus        94 iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~---------~~~e~~~~L~~i~  164 (301)
T TIGR03438        94 IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF---------TPEEAVAFLRRIR  164 (301)
T ss_pred             EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCC---------CHHHHHHHHHHHH
Confidence            699999999998773    22  35689998654554433    34566666677655         3566788999999


Q ss_pred             HHHhh
Q psy4109          71 ACLWS   75 (77)
Q Consensus        71 ~~L~~   75 (77)
                      +.|+.
T Consensus       165 ~~L~p  169 (301)
T TIGR03438       165 QLLGP  169 (301)
T ss_pred             HhcCC
Confidence            98863

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.76  E-value=4.4e-05  Score=56.66  Aligned_cols=62  Identities=21%  Similarity=0.385  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++..  ..++..+|. ..+   +++||.|+|+.+++|+         +.+.+..+|+.+++.|+.
T Consensus       196 iDlS~~~l~~A~~~~~~l~v~~~~~D~-~~l---~~~fD~Ivs~~~~ehv---------g~~~~~~~l~~i~r~Lkp  259 (383)
T PRK11705        196 VTISAEQQKLAQERCAGLPVEIRLQDY-RDL---NGQFDRIVSVGMFEHV---------GPKNYRTYFEVVRRCLKP  259 (383)
T ss_pred             EeCCHHHHHHHHHHhccCeEEEEECch-hhc---CCCCCEEEEeCchhhC---------ChHHHHHHHHHHHHHcCC
Confidence            5999999999998863  346777786 334   5789999999999876         234566789999988863

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.69  E-value=6.6e-05  Score=54.70  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHHhcCC----------CCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDREV----------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|++||+.|++|..          ..++.++|+ +.+   +++||.|+|+.+++|+.
T Consensus       172 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl-~~l---~~~fD~Vv~~~vL~H~p  226 (315)
T PLN02585        172 SDISAAMVAEAERRAKEALAALPPEVLPKFEANDL-ESL---SGKYDTVTCLDVLIHYP  226 (315)
T ss_pred             EECCHHHHHHHHHHHHhcccccccccceEEEEcch-hhc---CCCcCEEEEcCEEEecC
Confidence            5999999999998742          235677776 323   68999999999987653

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.69  E-value=6.7e-05  Score=50.52  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|++|++.|+++..      ...+.++|+    +..+++||.|++..+++++.+         ..+...++++.+
T Consensus        91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~l~~  154 (230)
T PRK07580         91 SDISPQMVEEARERAPEAGLAGNITFEVGDL----ESLLGRFDTVVCLDVLIHYPQ---------EDAARMLAHLAS  154 (230)
T ss_pred             EECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhccCCcCEEEEcchhhcCCH---------HHHHHHHHHHHh
Confidence            5999999999988742      246777773    445789999999999876532         334555555544

>KOG1331|consensus

Probab=97.49  E-value=7.3e-05  Score=54.38  Aligned_cols=64  Identities=22%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|++.+.+..|++.+.. ...++|+ -.+|+++.+||+++|++++||+.+.        .|-++.++++-++|+
T Consensus        71 ~D~c~~l~~~ak~~~~~-~~~~ad~-l~~p~~~~s~d~~lsiavihhlsT~--------~RR~~~l~e~~r~lr  134 (293)
T KOG1331|consen   71 CDLCTGLLGGAKRSGGD-NVCRADA-LKLPFREESFDAALSIAVIHHLSTR--------ERRERALEELLRVLR  134 (293)
T ss_pred             cchhhhhccccccCCCc-eeehhhh-hcCCCCCCccccchhhhhhhhhhhH--------HHHHHHHHHHHHHhc
Confidence            58889999999888742 5788997 5799999999999999999999653        445556666666664

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.48  E-value=2.5e-05  Score=56.04  Aligned_cols=51  Identities=12%  Similarity=0.124  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCC-CCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|||+.||++|.+|+.|-.+.++|+..-++ ..+..||.|++.-|+-|+-++
T Consensus       153 vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L  204 (287)
T COG4976         153 VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL  204 (287)
T ss_pred             CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch
Confidence            699999999999999988888888632333 468899999999999999554

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.45  E-value=0.00038  Score=42.10  Aligned_cols=60  Identities=10%  Similarity=0.010  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.     ...+++.+|+...++...++||.|++.....              .++++++.+++.|+
T Consensus        49 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--------------~~~~~l~~~~~~Lk  113 (124)
T TIGR02469        49 IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG--------------LLQEILEAIWRRLR  113 (124)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch--------------hHHHHHHHHHHHcC
Confidence            599999999998652     2357788886433555567899999975432              23578888888876

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN03075 nicotianamine synthase; Provisional

Probab=97.44  E-value=0.00015  Score=52.78  Aligned_cols=63  Identities=17%  Similarity=0.051  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHhcC-------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|++++|++.||+..       ...++.++|+.+ ++-..+.||.|++. +++++...++         ++.|.++++.|
T Consensus       155 iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k---------~~vL~~l~~~L  223 (296)
T PLN03075        155 FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFLA-ALVGMDKEEK---------VKVIEHLGKHM  223 (296)
T ss_pred             EeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEEe-cccccccccH---------HHHHHHHHHhc
Confidence            599999999999764       136899999865 43235789999999 8887743322         34677777766


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       224 k  224 (296)
T PLN03075        224 A  224 (296)
T ss_pred             C
Confidence            5

>KOG4300|consensus

Probab=97.44  E-value=0.00018  Score=50.93  Aligned_cols=50  Identities=18%  Similarity=0.389  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCC-cEEEccCCCCCC-CCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDRE-----VEG-DLVLSDLGQGVP-FRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~-~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|.|+.|-+.|.++.     .+. .+++++ ++++| ..++|+|+|++.+++.=.+|+
T Consensus       105 lDpn~~mee~~~ks~~E~k~~~~~~fvva~-ge~l~~l~d~s~DtVV~TlvLCSve~~  161 (252)
T KOG4300|consen  105 LDPNEKMEEIADKSAAEKKPLQVERFVVAD-GENLPQLADGSYDTVVCTLVLCSVEDP  161 (252)
T ss_pred             eCCcHHHHHHHHHHHhhccCcceEEEEeec-hhcCcccccCCeeeEEEEEEEeccCCH
Confidence            589999999987654     233 488899 58999 899999999999999755443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.43  E-value=0.0005  Score=49.65  Aligned_cols=71  Identities=8%  Similarity=-0.025  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+++.|++.|+++.     ....++++|+ ..+|+.+++||+|+++.-+.-  ......+...+-.+++++.+++.|+
T Consensus       210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~-~~l~~~~~~~D~Iv~dPPyg~--~~~~~~~~~~~l~~~~l~~~~r~Lk  285 (329)
T TIGR01177       210 CDIDWKMVAGARINLEHYGIEDFFVKRGDA-TKLPLSSESVDAIATDPPYGR--STTAAGDGLESLYERSLEEFHEVLK  285 (329)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCCCeEEecch-hcCCcccCCCCEEEECCCCcC--cccccCCchHHHHHHHHHHHHHHcc
Confidence            599999999998774     1247889998 579998999999999853311  0111123344556888888888874

This family is found exclusively in the Archaea.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.38  E-value=0.00067  Score=46.72  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHhc-C----------------CCCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109           1 MKKNAFYTNVARDR-E----------------VEGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRL   62 (77)
Q Consensus         1 iDiS~~ML~~A~~r-~----------------~~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l   62 (77)
                      +|+|+.+++.|.++ +                ...+++++|+. .++.. .+.||.|+-..+++         |.|+...
T Consensus        62 vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~fD~i~D~~~~~---------~l~~~~R  131 (213)
T TIGR03840        62 VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF-ALTAADLGPVDAVYDRAALI---------ALPEEMR  131 (213)
T ss_pred             EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC-CCCcccCCCcCEEEechhhc---------cCCHHHH
Confidence            69999999986432 2                23577899984 45542 46799999988775         5567788


Q ss_pred             HHHHHHHHHHHhh
Q psy4109          63 YKFFSSLFACLWS   75 (77)
Q Consensus        63 ~~~~~~l~~~L~~   75 (77)
                      .++++.|++.|+.
T Consensus       132 ~~~~~~l~~lLkp  144 (213)
T TIGR03840       132 QRYAAHLLALLPP  144 (213)
T ss_pred             HHHHHHHHHHcCC
Confidence            8899999998874

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.37  E-value=0.00018  Score=48.35  Aligned_cols=62  Identities=13%  Similarity=0.157  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    . ...+..+|+ ..+|.. +++||.|+++.+++++.++           ..+++++.+.|+
T Consensus        73 iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~  140 (224)
T TIGR01983        73 IDASEENIEVAKLHAKKDPLLKIEYRCTSV-EDLAEKGAKSFDVVTCMEVLEHVPDP-----------QAFIRACAQLLK  140 (224)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhcCCCCCccEEEehhHHHhCCCH-----------HHHHHHHHHhcC
Confidence            589999999998763    2 356777886 445554 4899999999999888543           345566555554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14967 putative methyltransferase; Provisional

Probab=97.37  E-value=0.00048  Score=46.99  Aligned_cols=72  Identities=15%  Similarity=0.031  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCC----------CCCChHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADK----------TSHNPAKRLYKFF   66 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~----------~~~~p~~~l~~~~   66 (77)
                      +|+|+.|++.|+++.    ....++.+|+.+  ++.+++||+|+++.-+........          .+......+.+++
T Consensus        65 vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  142 (223)
T PRK14967         65 VDISRRAVRSARLNALLAGVDVDVRRGDWAR--AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLC  142 (223)
T ss_pred             EECCHHHHHHHHHHHHHhCCeeEEEECchhh--hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHH
Confidence            599999999988763    235778888743  456789999999964322211100          1233455678888


Q ss_pred             HHHHHHHh
Q psy4109          67 SSLFACLW   74 (77)
Q Consensus        67 ~~l~~~L~   74 (77)
                      +.+++.|+
T Consensus       143 ~~a~~~Lk  150 (223)
T PRK14967        143 DAAPALLA  150 (223)
T ss_pred             HHHHHhcC
Confidence            88888775

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.35  E-value=0.00025  Score=48.11  Aligned_cols=58  Identities=12%  Similarity=0.018  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.++. +++||+|+++..               ..+..+++.+++.|+.
T Consensus        75 iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~-~~~~~-~~~fDlV~~~~~---------------~~~~~~l~~~~~~Lkp  137 (187)
T PRK00107         75 VDSLGKKIAFLREVAAELGLKNVTVVHGRA-EEFGQ-EEKFDVVTSRAV---------------ASLSDLVELCLPLLKP  137 (187)
T ss_pred             EeCcHHHHHHHHHHHHHcCCCCEEEEeccH-hhCCC-CCCccEEEEccc---------------cCHHHHHHHHHHhcCC
Confidence            599999999998753     2368899997 45776 889999999741               1235577777777753

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.35  E-value=0.00025  Score=51.44  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +++|++|++.|++|.    .  .+++...|.. .   .++.||.|+|+++|+++         ..+....||+++++.|.
T Consensus       101 vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r-d---~~e~fDrIvSvgmfEhv---------g~~~~~~ff~~~~~~L~  167 (283)
T COG2230         101 VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR-D---FEEPFDRIVSVGMFEHV---------GKENYDDFFKKVYALLK  167 (283)
T ss_pred             eeCCHHHHHHHHHHHHHcCCCcccEEEecccc-c---cccccceeeehhhHHHh---------CcccHHHHHHHHHhhcC
Confidence            589999999998863    2  3567777762 2   34459999999999877         34778899999999986


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       168 ~  168 (283)
T COG2230         168 P  168 (283)
T ss_pred             C
Confidence            3

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.33  E-value=0.00071  Score=49.69  Aligned_cols=66  Identities=18%  Similarity=0.088  Sum_probs=48.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|+.|++.|+++.    ...+++.+|...   ..++.||.|+|+..||+..+      .-.+...++++...+.|+.
T Consensus       226 vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~---~~~~~fDlIvsNPPFH~g~~------~~~~~~~~~i~~a~~~Lkp  295 (342)
T PRK09489        226 SDVSAAALESSRATLAANGLEGEVFASNVFS---DIKGRFDMIISNPPFHDGIQ------TSLDAAQTLIRGAVRHLNS  295 (342)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCEEEEccccc---ccCCCccEEEECCCccCCcc------ccHHHHHHHHHHHHHhcCc
Confidence            599999999998653    345677788632   23688999999999987422      2245677888888888764

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.27  E-value=0.001  Score=37.49  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHhc---C--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDR---E--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r---~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+++++++.++++   .  ...+++.+|..+..+...+.||.++++.+++++          .+....+++.+...|+
T Consensus        27 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~   95 (107)
T cd02440          27 VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL----------VEDLARFLEEARRLLK   95 (107)
T ss_pred             EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcC
Confidence            58999999988722   1  235788889754333367889999999998775          3455667777766654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.27  E-value=0.00019  Score=51.20  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +++|++..+.|+++..      ..++..+|.. .++.   +||.|+|+.++.++         +.+.+..+|+++++.|+
T Consensus        91 itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~-~~~~---~fD~IvSi~~~Ehv---------g~~~~~~~f~~~~~~Lk  157 (273)
T PF02353_consen   91 ITLSEEQAEYARERIREAGLEDRVEVRLQDYR-DLPG---KFDRIVSIEMFEHV---------GRKNYPAFFRKISRLLK  157 (273)
T ss_dssp             EES-HHHHHHHHHHHHCSTSSSTEEEEES-GG-G------S-SEEEEESEGGGT---------CGGGHHHHHHHHHHHSE
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEEeecc-ccCC---CCCEEEEEechhhc---------ChhHHHHHHHHHHHhcC
Confidence            4689999999886642      2467888873 4543   99999999999765         45778899999999886

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.25  E-value=0.00044  Score=46.38  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHhc----C-CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDR----E-VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r----~-~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++    + .+.+++++|+ +.++ .+++||.|+|..
T Consensus        72 iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        72 LESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             EeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhcc-ccCCccEEEehh
Confidence            59999999888754    2 2468899997 4564 367999999986

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.22  E-value=0.00025  Score=47.59  Aligned_cols=70  Identities=13%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC---CCCCceeeeeeccchhhhcccCCCCCChHHH-HHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP---FRAGAFDGAISISALQWLCNADKTSHNPAKR-LYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP---f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~-l~~~~~~l~~   71 (77)
                      +|+|++|++.|+++.     .+.+++++|+. .++   +.+++||.|+.+..-.|...    .|...+. ..++++.+++
T Consensus        46 vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~-~~~~~~~~~~~~d~v~~~~pdpw~k~----~h~~~r~~~~~~l~~~~r  120 (194)
T TIGR00091        46 IEIHTPIVLAANNKANKLGLKNLHVLCGDAN-ELLDKFFPDGSLSKVFLNFPDPWPKK----RHNKRRITQPHFLKEYAN  120 (194)
T ss_pred             EEeeHHHHHHHHHHHHHhCCCCEEEEccCHH-HHHHhhCCCCceeEEEEECCCcCCCC----CccccccCCHHHHHHHHH
Confidence            589999999997663     24688999973 343   45679999999977677533    2222111 2568888888


Q ss_pred             HHhh
Q psy4109          72 CLWS   75 (77)
Q Consensus        72 ~L~~   75 (77)
                      .|+.
T Consensus       121 ~Lkp  124 (194)
T TIGR00091       121 VLKK  124 (194)
T ss_pred             HhCC
Confidence            8863

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PHA03411 putative methyltransferase; Provisional

Probab=97.21  E-value=0.00084  Score=48.61  Aligned_cols=47  Identities=17%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|+.|++.|+++.++.+++++|+. .++ .+++||+|+|+.-+.++.
T Consensus        94 VDisp~al~~Ar~n~~~v~~v~~D~~-e~~-~~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411         94 VELNPEFARIGKRLLPEAEWITSDVF-EFE-SNEKFDVVISNPPFGKIN  140 (279)
T ss_pred             EECCHHHHHHHHHhCcCCEEEECchh-hhc-ccCCCcEEEEcCCccccC
Confidence            59999999999998777889999984 344 467899999999888753

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.19  E-value=0.00047  Score=46.78  Aligned_cols=49  Identities=16%  Similarity=0.173  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|+|++|++.|+++.    ...+++.+|+. .++ ..++.||.|+++.++++..+
T Consensus        76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~Ii~~~~l~~~~~  129 (233)
T PRK05134         76 IDASEENIEVARLHALESGLKIDYRQTTAE-ELAAEHPGQFDVVTCMEMLEHVPD  129 (233)
T ss_pred             EcCCHHHHHHHHHHHHHcCCceEEEecCHH-HhhhhcCCCccEEEEhhHhhccCC
Confidence            589999999998763    23467888864 444 45689999999999888754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.18  E-value=0.00027  Score=50.34  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD   52 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~   52 (77)
                      +|+|++|++.|+.+.    ..+++.+..+ +.+-...++||+|+|+=|++|++|++
T Consensus        87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~-edl~~~~~~FDvV~cmEVlEHv~dp~  141 (243)
T COG2227          87 IDASEKPIEVAKLHALESGVNIDYRQATV-EDLASAGGQFDVVTCMEVLEHVPDPE  141 (243)
T ss_pred             ecCChHHHHHHHHhhhhccccccchhhhH-HHHHhcCCCccEEEEhhHHHccCCHH
Confidence            699999999999664    3345666665 55665668999999999999997764

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.16  E-value=0.0011  Score=49.56  Aligned_cols=67  Identities=9%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHhcC----C----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+|+.|++.|+++.    .    ..+++.+|..+.  +.+++||+|+||.-+|+...      .......++|+..++.
T Consensus       258 vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~~~~fDlIlsNPPfh~~~~------~~~~ia~~l~~~a~~~  329 (378)
T PRK15001        258 VDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFRFNAVLCNPPFHQQHA------LTDNVAWEMFHHARRC  329 (378)
T ss_pred             EECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CCCCCEEEEEECcCcccCcc------CCHHHHHHHHHHHHHh
Confidence            599999999999763    2    236777886432  35678999999998886421      1234557889998888


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus       330 Lkp  332 (378)
T PRK15001        330 LKI  332 (378)
T ss_pred             ccc
Confidence            863

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.12  E-value=0.0011  Score=43.55  Aligned_cols=66  Identities=21%  Similarity=0.186  Sum_probs=46.1

Q ss_pred             CCCCHHHHHHHHhcC----CC-CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VE-GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~-~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.+++.|+++.    .. .+++.+|..+.+  .++.||.|+||.=+++-      .......+++++..-.+.|+
T Consensus        61 vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~~------~~~~~~~~~~~i~~a~~~Lk  131 (170)
T PF05175_consen   61 VDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGKFDLIVSNPPFHAG------GDDGLDLLRDFIEQARRYLK  131 (170)
T ss_dssp             EESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTCEEEEEE---SBTT------SHCHHHHHHHHHHHHHHHEE
T ss_pred             EcCCHHHHHHHHHHHHhcCccccccccccccccc--cccceeEEEEccchhcc------cccchhhHHHHHHHHHHhcc
Confidence            599999999998764    22 578899986544  48999999999764332      23345677888888777765

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14968 putative methyltransferase; Provisional

Probab=97.11  E-value=0.0019  Score=41.91  Aligned_cols=72  Identities=18%  Similarity=0.198  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHHhcC----C-C--CcEEEccCCCCCCCCCCceeeeeeccchhhhc----------ccCCCCCChHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V-E--GDLVLSDLGQGVPFRAGAFDGAISISALQWLC----------NADKTSHNPAKRLY   63 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~----------d~~~~~~~p~~~l~   63 (77)
                      +|+|++|++.|+++.    . .  ..++++|+.+  ++.+++||+|+++..+..-.          -....+......+.
T Consensus        51 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (188)
T PRK14968         51 VDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVID  128 (188)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHH
Confidence            589999999997663    1 1  5678899754  45666899999986543210          00011233456678


Q ss_pred             HHHHHHHHHHh
Q psy4109          64 KFFSSLFACLW   74 (77)
Q Consensus        64 ~~~~~l~~~L~   74 (77)
                      .+++++++.|+
T Consensus       129 ~~i~~~~~~Lk  139 (188)
T PRK14968        129 RFLDEVGRYLK  139 (188)
T ss_pred             HHHHHHHHhcC
Confidence            88888888875

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.03  E-value=0.0011  Score=44.47  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .|++++|++.|+++..      ...+.+.|+ ..+|+.++++|.|+++.=+       +..-.-.+.+++++.++.+.+.
T Consensus        67 ~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~-~~l~~~~~~~d~IvtnPPy-------G~r~~~~~~~~~ly~~~~~~~~  138 (179)
T PF01170_consen   67 SDIDPKAVRGARENLKAAGVEDYIDFIQWDA-RELPLPDGSVDAIVTNPPY-------GRRLGSKKDLEKLYRQFLRELK  138 (179)
T ss_dssp             EESSHHHHHHHHHHHHHTT-CGGEEEEE--G-GGGGGTTSBSCEEEEE--S-------TTSHCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcccCCceEEEecch-hhcccccCCCCEEEECcch-------hhhccCHHHHHHHHHHHHHHHH
Confidence            4899999999998852      236888997 5799889999999999633       2222334567777777777665


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       139 ~  139 (179)
T PF01170_consen  139 R  139 (179)
T ss_dssp             C
T ss_pred             H
Confidence            4

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00811 spermidine synthase; Provisional

Probab=97.02  E-value=0.00084  Score=47.88  Aligned_cols=66  Identities=23%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~   68 (77)
                      +||+++|++.|++..          +..+++.+|+.+-++..+++||+|++.+.-.|         .|...|  ++||+.
T Consensus       106 VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~---------~~~~~l~t~ef~~~  176 (283)
T PRK00811        106 VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV---------GPAEGLFTKEFYEN  176 (283)
T ss_pred             EeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCC---------CchhhhhHHHHHHH
Confidence            589999999999764          23478899964434445789999999754222         222333  778888


Q ss_pred             HHHHHhh
Q psy4109          69 LFACLWS   75 (77)
Q Consensus        69 l~~~L~~   75 (77)
                      +.+.|+.
T Consensus       177 ~~~~L~~  183 (283)
T PRK00811        177 CKRALKE  183 (283)
T ss_pred             HHHhcCC
Confidence            8888763

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.99  E-value=0.0014  Score=44.53  Aligned_cols=73  Identities=18%  Similarity=0.133  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC-----CCCCChHH----------
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD-----KTSHNPAK----------   60 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~-----~~~~~p~~----------   60 (77)
                      +|+|+.|++.|+++.    . +.+++++|+.+  ++.+++||.|+++.-+....+..     ...+.|..          
T Consensus       117 iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  194 (251)
T TIGR03534       117 VDISPEALAVARKNAARLGLDNVTFLQSDWFE--PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLD  194 (251)
T ss_pred             EECCHHHHHHHHHHHHHcCCCeEEEEECchhc--cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHH
Confidence            589999999998763    1 35789999744  56688999999986543222111     11122322          


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4109          61 RLYKFFSSLFACLWS   75 (77)
Q Consensus        61 ~l~~~~~~l~~~L~~   75 (77)
                      .++.+++.+++.|+.
T Consensus       195 ~~~~~i~~~~~~L~~  209 (251)
T TIGR03534       195 FYRRIIAQAPRLLKP  209 (251)
T ss_pred             HHHHHHHHHHHhccc
Confidence            335777777777753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.97  E-value=0.00096  Score=50.22  Aligned_cols=67  Identities=9%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCC--CCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l~~   71 (77)
                      +|++++|++.|.++.     .+..++++|+. .+  ++.+++||.|+.++..-|..    ..|   +||  ..++..+++
T Consensus       152 IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~-~ll~~~~~~s~D~I~lnFPdPW~K----krH---RRlv~~~fL~e~~R  223 (390)
T PRK14121        152 IEIHTPSIEQVLKQIELLNLKNLLIINYDAR-LLLELLPSNSVEKIFVHFPVPWDK----KPH---RRVISEDFLNEALR  223 (390)
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEECCHH-HhhhhCCCCceeEEEEeCCCCccc----cch---hhccHHHHHHHHHH
Confidence            589999999987663     24678999973 33  57899999999887666642    233   454  788999998


Q ss_pred             HHhh
Q psy4109          72 CLWS   75 (77)
Q Consensus        72 ~L~~   75 (77)
                      .|+.
T Consensus       224 vLkp  227 (390)
T PRK14121        224 VLKP  227 (390)
T ss_pred             HcCC
Confidence            8863

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.96  E-value=0.0012  Score=44.38  Aligned_cols=43  Identities=14%  Similarity=0.026  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.      .+..++.+|+.+.++..++.||.|+++.
T Consensus        71 vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377         71 VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG  119 (198)
T ss_pred             EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence            599999999988662      2356788887443554567899999964

>KOG1270|consensus

Probab=96.94  E-value=0.001  Score=48.17  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHhcC---C-------C-CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---V-------E-GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~-------~-~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l   69 (77)
                      +|+|+.|++.|+++.   |       | .++.+.|+ +.+   -+.||+|+|+-+++|+.|+           +.|+..+
T Consensus       117 ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~-E~~---~~~fDaVvcsevleHV~dp-----------~~~l~~l  181 (282)
T KOG1270|consen  117 IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV-EGL---TGKFDAVVCSEVLEHVKDP-----------QEFLNCL  181 (282)
T ss_pred             ecccHHHHHHHHHhhhcCchhccccceeeehhhcch-hhc---ccccceeeeHHHHHHHhCH-----------HHHHHHH
Confidence            699999999999773   1       1 24566675 444   2339999999999999775           3455555


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      .+.|+
T Consensus       182 ~~~lk  186 (282)
T KOG1270|consen  182 SALLK  186 (282)
T ss_pred             HHHhC
Confidence            55554

>PHA03412 putative methyltransferase; Provisional

Probab=96.90  E-value=0.0011  Score=47.11  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +||++.|++.|+++.....++.+|+ ...++ +++||.||||-=+
T Consensus        82 VEID~~Al~~Ar~n~~~~~~~~~D~-~~~~~-~~~FDlIIsNPPY  124 (241)
T PHA03412         82 VELNHTYYKLGKRIVPEATWINADA-LTTEF-DTLFDMAISNPPF  124 (241)
T ss_pred             EECCHHHHHHHHhhccCCEEEEcch-hcccc-cCCccEEEECCCC
Confidence            5899999999998877788999997 44554 6789999999743

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.90  E-value=0.00075  Score=45.70  Aligned_cols=47  Identities=15%  Similarity=0.099  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.    .  ..+++.+|..+.+| .+++||.|+++.++.++
T Consensus       103 iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~~~  155 (205)
T PRK13944        103 VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAASTI  155 (205)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccCcchh
Confidence            589999999998763    1  25788999754344 56799999999887654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.89  E-value=0.0026  Score=43.98  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++..     ..+++.+|+.+  |+.+++||.|+|+.
T Consensus       138 iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~--~~~~~~fD~Iv~np  183 (275)
T PRK09328        138 VDISPEALAVARRNAKHGLGARVEFLQGDWFE--PLPGGRFDLIVSNP  183 (275)
T ss_pred             EECCHHHHHHHHHHHHhCCCCcEEEEEccccC--cCCCCceeEEEECC
Confidence            5999999999998732     45789999744  34478999999974

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.88  E-value=0.0028  Score=45.22  Aligned_cols=41  Identities=20%  Similarity=0.092  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.  +++++||+|+|+.
T Consensus       151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NP  197 (284)
T TIGR03533       151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNP  197 (284)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECC
Confidence            599999999998773    2  257899997543  4567899999983

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.88  E-value=0.0018  Score=44.13  Aligned_cols=44  Identities=9%  Similarity=-0.019  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|++++|++.|+++.     .+.+++++|.. ..+..++.||.|++..++
T Consensus       107 vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~-~~~~~~~~fD~I~~~~~~  155 (212)
T PRK13942        107 IERIPELAEKAKKTLKKLGYDNVEVIVGDGT-LGYEENAPYDRIYVTAAG  155 (212)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCeEEEECCcc-cCCCcCCCcCEEEECCCc
Confidence            589999999998874     23688999974 344567899999998765

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.87  E-value=0.0031  Score=45.61  Aligned_cols=72  Identities=14%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccc------hhhhc-----ccC---CCCCChHH
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISA------LQWLC-----NAD---KTSHNPAK   60 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~------l~w~~-----d~~---~~~~~p~~   60 (77)
                      +|+|+.|++.|+++.    .  ..+++++|+.+.+  .+++||.|+|+.=      +.-+.     .+.   ..+.....
T Consensus       163 vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~  240 (307)
T PRK11805        163 VDISPDALAVAEINIERHGLEDRVTLIESDLFAAL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD  240 (307)
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence            599999999998773    1  2578999975444  4678999999831      11010     010   01223345


Q ss_pred             HHHHHHHHHHHHHh
Q psy4109          61 RLYKFFSSLFACLW   74 (77)
Q Consensus        61 ~l~~~~~~l~~~L~   74 (77)
                      ..+++++...+.|+
T Consensus       241 ~~~~i~~~a~~~L~  254 (307)
T PRK11805        241 LVRRILAEAPDYLT  254 (307)
T ss_pred             HHHHHHHHHHHhcC
Confidence            56778888777775

>PRK01581 speE spermidine synthase; Validated

Probab=96.83  E-value=0.0014  Score=49.17  Aligned_cols=69  Identities=12%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHhc------------CCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDR------------EVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r------------~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~   68 (77)
                      +||+++|++.|++.            .+..+++.+|+.+-++-.++.||+|+...     .|+... +...-.-++||+.
T Consensus       180 VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl-----~DP~~~-~~~~LyT~EFy~~  253 (374)
T PRK01581        180 VDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDF-----PDPATE-LLSTLYTSELFAR  253 (374)
T ss_pred             EeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcC-----CCcccc-chhhhhHHHHHHH
Confidence            58999999999961            13457888997544555678899999984     233211 1222233678888


Q ss_pred             HHHHHhh
Q psy4109          69 LFACLWS   75 (77)
Q Consensus        69 l~~~L~~   75 (77)
                      +++.|+.
T Consensus       254 ~~~~LkP  260 (374)
T PRK01581        254 IATFLTE  260 (374)
T ss_pred             HHHhcCC
Confidence            8888763

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.75  E-value=0.0029  Score=41.40  Aligned_cols=45  Identities=4%  Similarity=-0.057  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+++.|++.++++..   +.+++++|+ ..+++.++.||.|+|+.-++
T Consensus        41 vE~~~~~~~~~~~~~~~~~~v~ii~~D~-~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       41 IEIDPRLAPRLREKFAAADNLTVIHGDA-LKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             EECCHHHHHHHHHHhccCCCEEEEECch-hcCCccccCCCEEEECCCcc
Confidence            5899999999998853   467899997 57888887899999997653

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.70  E-value=0.0055  Score=46.67  Aligned_cols=42  Identities=12%  Similarity=0.070  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCC-CCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPF-RAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf-~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    .+.+++++|+.+ ..+ .+++||.|+||.
T Consensus       281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e-~~l~~~~~FDLIVSNP  327 (423)
T PRK14966        281 SDISPPALETARKNAADLGARVEFAHGSWFD-TDMPSEGKWDIIVSNP  327 (423)
T ss_pred             EECCHHHHHHHHHHHHHcCCcEEEEEcchhc-cccccCCCccEEEECC
Confidence            599999999998773    245789999743 222 356899999986

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.66  E-value=0.0034  Score=46.11  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             CCCCHHHHHHHHhcC---------------CCCcEEEccCCC-----CCCCCCCceeeeeeccchhhhcccCCCCCChHH
Q psy4109           1 MKKNAFYTNVARDRE---------------VEGDLVLSDLGQ-----GVPFRAGAFDGAISISALQWLCNADKTSHNPAK   60 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------------~~~~~~~~D~~~-----~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~   60 (77)
                      +|||++-|+.|++|.               -...++.+|...     .++.....||+|-+-++|||....       .+
T Consensus        91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes-------e~  163 (331)
T PF03291_consen   91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFES-------EE  163 (331)
T ss_dssp             EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS-------HH
T ss_pred             EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCC-------HH
Confidence            599999999999886               123667887532     233334699999999999997543       57


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4109          61 RLYKFFSSLFACLWS   75 (77)
Q Consensus        61 ~l~~~~~~l~~~L~~   75 (77)
                      ..+.++.++.+.|+.
T Consensus       164 ~ar~~l~Nvs~~Lk~  178 (331)
T PF03291_consen  164 KARQFLKNVSSLLKP  178 (331)
T ss_dssp             HHHHHHHHHHHTEEE
T ss_pred             HHHHHHHHHHHhcCC
Confidence            888999999988863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.53  E-value=0.0065  Score=43.05  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+  ++.++.||+|+|+.
T Consensus       144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~--~~~~~~fDlIvsNP  190 (284)
T TIGR00536       144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE--PLAGQKIDIIVSNP  190 (284)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc--cCcCCCccEEEECC
Confidence            599999999999763    2  25789999854  44555899999984

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.52  E-value=0.0046  Score=40.91  Aligned_cols=42  Identities=10%  Similarity=0.134  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+|++|++.|+++.     ...+++.+|+.  .++ +++||+|++....
T Consensus        61 vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~--~~~-~~~~D~v~~~~~~  107 (187)
T PRK08287         61 IERNPDALRLIKENRQRFGCGNIDIIPGEAP--IEL-PGKADAIFIGGSG  107 (187)
T ss_pred             EECCHHHHHHHHHHHHHhCCCCeEEEecCch--hhc-CcCCCEEEECCCc
Confidence            599999999998753     23567888862  344 4679999987643

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.48  E-value=0.0022  Score=43.88  Aligned_cols=54  Identities=9%  Similarity=-0.071  Sum_probs=35.7

Q ss_pred             CCcEEEccCCCCC--------CCCCCceeeeeeccchhhhcccCCCCCChHH---HHHHHHHHHHHHHh
Q psy4109          17 EGDLVLSDLGQGV--------PFRAGAFDGAISISALQWLCNADKTSHNPAK---RLYKFFSSLFACLW   74 (77)
Q Consensus        17 ~~~~~~~D~~~~l--------Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~---~l~~~~~~l~~~L~   74 (77)
                      +..++++|+. ..        ++.+++||.|+|+.+.+|..++.   ...+.   -+...++.+++.|+
T Consensus        92 ~v~~i~~D~~-~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~---~d~~~~~~~~~~~L~~~~~~Lk  156 (209)
T PRK11188         92 GVDFLQGDFR-DELVLKALLERVGDSKVQVVMSDMAPNMSGTPA---VDIPRAMYLVELALDMCRDVLA  156 (209)
T ss_pred             CcEEEecCCC-ChHHHHHHHHHhCCCCCCEEecCCCCccCCChH---HHHHHHHHHHHHHHHHHHHHcC
Confidence            4678999985 43        36789999999999988865432   11111   13456777776664

>PRK03612 spermidine synthase; Provisional

Probab=96.44  E-value=0.0023  Score=49.27  Aligned_cols=68  Identities=18%  Similarity=-0.040  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHhcC------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~   68 (77)
                      +|++++|++.|+++.            +..+++.+|..+-+...+++||.|++...-.+.+..      ..-.-++||+.
T Consensus       327 VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~------~~L~t~ef~~~  400 (521)
T PRK03612        327 VDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPAL------GKLYSVEFYRL  400 (521)
T ss_pred             EECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcch------hccchHHHHHH
Confidence            589999999999831            345788899744344456799999998532221100      00111457777


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      +.+.|+
T Consensus       401 ~~~~L~  406 (521)
T PRK03612        401 LKRRLA  406 (521)
T ss_pred             HHHhcC
Confidence            777765

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=96.43  E-value=0.0056  Score=42.05  Aligned_cols=62  Identities=11%  Similarity=0.145  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHH----hcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVAR----DREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~----~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|+.-++.++    +++...+..+.|+. ...+ ++.||.|+|..|++++.         ++.+...++++-+++
T Consensus        58 vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~~~-~~~yD~I~st~v~~fL~---------~~~~~~i~~~m~~~~  123 (192)
T PF03848_consen   58 VDISPVALEKLQRLAEEEGLDIRTRVADLN-DFDF-PEEYDFIVSTVVFMFLQ---------RELRPQIIENMKAAT  123 (192)
T ss_dssp             EESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CBS--TTTEEEEEEESSGGGS----------GGGHHHHHHHHHHTE
T ss_pred             EECCHHHHHHHHHHHhhcCceeEEEEecch-hccc-cCCcCEEEEEEEeccCC---------HHHHHHHHHHHHhhc
Confidence            588988777654    44555778889984 5666 46899999999998873         334455555554443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.42  E-value=0.013  Score=40.54  Aligned_cols=65  Identities=14%  Similarity=0.086  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHh-cCC----------------CCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109           1 MKKNAFYTNVARD-REV----------------EGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRL   62 (77)
Q Consensus         1 iDiS~~ML~~A~~-r~~----------------~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l   62 (77)
                      +|+|+..++.|.+ ++.                ..++.++|+ ..++.. .+.||.|+-..+++         |-|++..
T Consensus        65 vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-~~l~~~~~~~fd~v~D~~~~~---------~l~~~~R  134 (218)
T PRK13255         65 VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF-FALTAADLADVDAVYDRAALI---------ALPEEMR  134 (218)
T ss_pred             EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc-cCCCcccCCCeeEEEehHhHh---------hCCHHHH
Confidence            6999999998743 321                246788997 455433 36899999998875         4467788


Q ss_pred             HHHHHHHHHHHhh
Q psy4109          63 YKFFSSLFACLWS   75 (77)
Q Consensus        63 ~~~~~~l~~~L~~   75 (77)
                      .++++.|++.|+.
T Consensus       135 ~~~~~~l~~lL~p  147 (218)
T PRK13255        135 ERYVQQLAALLPA  147 (218)
T ss_pred             HHHHHHHHHHcCC
Confidence            8899999998864

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.36  E-value=0.002  Score=38.91  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+++..++.|+++..      ..+++++|.. .++  +.++.||.|+++.-+....   .......+...+++....+.
T Consensus        29 vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~D~Iv~npP~~~~~---~~~~~~~~~~~~~~~~~~~~  104 (117)
T PF13659_consen   29 VDIDPEAVELARRNLPRNGLDDRVEVIVGDAR-DLPEPLPDGKFDLIVTNPPYGPRS---GDKAALRRLYSRFLEAAARL  104 (117)
T ss_dssp             EESSHHHHHHHHHHCHHCTTTTTEEEEESHHH-HHHHTCTTT-EEEEEE--STTSBT---T----GGCHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHccCCceEEEEECchh-hchhhccCceeEEEEECCCCcccc---ccchhhHHHHHHHHHHHHHH
Confidence            5899999999998752      2488999974 454  7899999999997553211   11122233556777777766


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       105 L~  106 (117)
T PF13659_consen  105 LK  106 (117)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.29  E-value=0.0081  Score=42.75  Aligned_cols=58  Identities=10%  Similarity=0.048  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++..      ......+|.   .++.++.||.|+++...+              .+.+++..+++.|+
T Consensus       188 vDid~~al~~a~~n~~~n~~~~~~~~~~~~~---~~~~~~~fDlVvan~~~~--------------~l~~ll~~~~~~Lk  250 (288)
T TIGR00406       188 IDIDPLAVESARKNAELNQVSDRLQVKLIYL---EQPIEGKADVIVANILAE--------------VIKELYPQFSRLVK  250 (288)
T ss_pred             EECCHHHHHHHHHHHHHcCCCcceEEEeccc---ccccCCCceEEEEecCHH--------------HHHHHHHHHHHHcC
Confidence            5999999999988742      123344442   344578999999986543              34567777777765


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       251 p  251 (288)
T TIGR00406       251 P  251 (288)
T ss_pred             C
Confidence            3

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK04457 spermidine synthase; Provisional

Probab=96.17  E-value=0.0041  Score=43.94  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHH--HHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKR--LYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~--l~~~~~~l~~~   72 (77)
                      +|++++|++.|+++.      ...+++.+|+.+-++-.+++||+|+... +    +.    ..++..  ..+||+.+.++
T Consensus        96 VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~----~~----~~~~~~l~t~efl~~~~~~  166 (262)
T PRK04457         96 VEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F----DG----EGIIDALCTQPFFDDCRNA  166 (262)
T ss_pred             EECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C----CC----CCCccccCcHHHHHHHHHh
Confidence            589999999999874      2247888997544444467899999863 1    11    111222  35888888888


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus       167 L~p  169 (262)
T PRK04457        167 LSS  169 (262)
T ss_pred             cCC
Confidence            764

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.11  E-value=0.008  Score=40.48  Aligned_cols=47  Identities=17%  Similarity=0.107  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.     .+.+++.+|..+.+| ..++||.|++..+++++
T Consensus       106 vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~~  157 (212)
T PRK00312        106 VERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAAPEI  157 (212)
T ss_pred             EeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCchhh
Confidence            589999999998763     236788999754333 35789999998766544

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.10  E-value=0.0063  Score=41.25  Aligned_cols=45  Identities=13%  Similarity=-0.033  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|++++|++.|+++.     .+.+++++|+.+ .+...+.||.|++..+..
T Consensus       108 vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Ii~~~~~~  157 (215)
T TIGR00080       108 IERIPELAEKAERRLRKLGLDNVIVIVGDGTQ-GWEPLAPYDRIYVTAAGP  157 (215)
T ss_pred             EeCCHHHHHHHHHHHHHCCCCCeEEEECCccc-CCcccCCCCEEEEcCCcc
Confidence            589999999998774     246789999744 333457899999886543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.07  E-value=0.017  Score=44.43  Aligned_cols=41  Identities=17%  Similarity=0.101  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    .  ...++++|+.+  ++.++.||.|+||.
T Consensus       168 vDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~--~~~~~~fDlIvsNP  214 (506)
T PRK01544        168 TDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE--NIEKQKFDFIVSNP  214 (506)
T ss_pred             EECCHHHHHHHHHHHHHcCCccceeeeecchhh--hCcCCCccEEEECC
Confidence            599999999999873    1  35788899744  33467899999986

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.02  E-value=0.023  Score=42.35  Aligned_cols=72  Identities=10%  Similarity=-0.022  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHhcCCCC-----cEEEc-cCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEG-----DLVLS-DLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~-----~~~~~-D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +||...|++-|+.|..+.     .+..+ |+ ..+|+++.+||+|++=.=.  =.....+.....+=+.++|+.++++|+
T Consensus       225 ~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da-~~lpl~~~~vdaIatDPPY--Grst~~~~~~l~~Ly~~~le~~~evLk  301 (347)
T COG1041         225 SDIDERMVRGAKINLEYYGIEDYPVLKVLDA-TNLPLRDNSVDAIATDPPY--GRSTKIKGEGLDELYEEALESASEVLK  301 (347)
T ss_pred             cchHHHHHhhhhhhhhhhCcCceeEEEeccc-ccCCCCCCccceEEecCCC--CcccccccccHHHHHHHHHHHHHHHhh
Confidence            599999999999886322     24444 97 5799999999999986421  111112333445667888888888886


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      +
T Consensus       302 ~  302 (347)
T COG1041         302 P  302 (347)
T ss_pred             c
Confidence            4

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.00  E-value=0.015  Score=43.79  Aligned_cols=39  Identities=8%  Similarity=0.047  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s   41 (77)
                      +|+|++|++.++++.    . +.+++++|+ ..++ .+++||.|+.
T Consensus       281 vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da-~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        281 VDRYPQKLEKIRSHASALGITIIETIEGDA-RSFS-PEEQPDAILL  324 (445)
T ss_pred             EECCHHHHHHHHHHHHHhCCCeEEEEeCcc-cccc-cCCCCCEEEE
Confidence            599999999998764    1 357888997 4454 5678999994

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=95.91  E-value=0.021  Score=40.55  Aligned_cols=62  Identities=8%  Similarity=0.015  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ |+|++.|+++..      ..+++.+|+ ...++++  +|+++.+.++|.+.         .+...+.|++++++|+
T Consensus       179 ~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~-~~~~~~~--~D~v~~~~~lh~~~---------~~~~~~il~~~~~~L~  245 (306)
T TIGR02716       179 LNL-PGAIDLVNENAAEKGVADRMRGIAVDI-YKESYPE--ADAVLFCRILYSAN---------EQLSTIMCKKAFDAMR  245 (306)
T ss_pred             Eec-HHHHHHHHHHHHhCCccceEEEEecCc-cCCCCCC--CCEEEeEhhhhcCC---------hHHHHHHHHHHHHhcC
Confidence            465 789999986631      247899997 3455543  69999888887542         2345678888988886


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       246 p  246 (306)
T TIGR02716       246 S  246 (306)
T ss_pred             C
Confidence            3

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.91  E-value=0.01  Score=39.33  Aligned_cols=64  Identities=11%  Similarity=0.038  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCC--------CCCCceeeeeeccchh----hhcccCCCCCChHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVP--------FRAGAFDGAISISALQ----WLCNADKTSHNPAKRLYKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lP--------f~~~sFD~v~s~~~l~----w~~d~~~~~~~p~~~l~~~~~~   68 (77)
                      +|+|+.|      +..+.+++++|+.+ .+        +.+++||+|++..+.+    |..+    .+...+.++..++.
T Consensus        63 vDis~~~------~~~~i~~~~~d~~~-~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~----~~~~~~~~~~~l~~  131 (188)
T TIGR00438        63 VDLQPMK------PIENVDFIRGDFTD-EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDID----HLRSIDLVELALDI  131 (188)
T ss_pred             Eeccccc------cCCCceEEEeeCCC-hhHHHHHHHHhCCCCccEEEcCCCCCCCCCcccc----HHHHHHHHHHHHHH
Confidence            4777755      22346788889743 32        4577899999976422    2211    11122345778888


Q ss_pred             HHHHHhh
Q psy4109          69 LFACLWS   75 (77)
Q Consensus        69 l~~~L~~   75 (77)
                      +++.|+.
T Consensus       132 ~~~~Lkp  138 (188)
T TIGR00438       132 AKEVLKP  138 (188)
T ss_pred             HHHHccC
Confidence            8888763

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.90  E-value=0.025  Score=40.93  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=33.8

Q ss_pred             cEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          19 DLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        19 ~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+.+.|+.+ .|+. .+.||+|+|-.++.|+.         ++..++.+.+++.+|+
T Consensus       207 ~F~~~NL~~-~~~~~~~~fD~I~cRNvliyF~---------~~~~~~vl~~l~~~L~  253 (287)
T PRK10611        207 DFQQLNLLA-KQWAVPGPFDAIFCRNVMIYFD---------KTTQERILRRFVPLLK  253 (287)
T ss_pred             EEEcccCCC-CCCccCCCcceeeHhhHHhcCC---------HHHHHHHHHHHHHHhC
Confidence            567778754 3332 68899999999998873         3456678888888875

>TIGR00417 speE spermidine synthase

Probab=95.70  E-value=0.014  Score=41.20  Aligned_cols=67  Identities=15%  Similarity=0.001  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|++++|++.|++..         +..+++.+|..+-+...+++||+|++.....+       +....-.-+++|+.+.+
T Consensus       102 veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~-------~~~~~l~~~ef~~~~~~  174 (270)
T TIGR00417       102 VDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV-------GPAETLFTKEFYELLKK  174 (270)
T ss_pred             EeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC-------CcccchhHHHHHHHHHH
Confidence            589999999998863         12456777753323333679999998754211       11111113577778777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       175 ~L~  177 (270)
T TIGR00417       175 ALN  177 (270)
T ss_pred             HhC
Confidence            775

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2361|consensus

Probab=95.64  E-value=0.037  Score=39.88  Aligned_cols=65  Identities=15%  Similarity=0.066  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHhcCCC----CcEEEccCCC---CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREVE----GDLVLSDLGQ---GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~----~~~~~~D~~~---~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|.||.-++.-+++..+    ....+.|++.   .-|...+++|.++.++||         +..+++.....+.+|++.|
T Consensus       103 cDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---------SAi~pek~~~a~~nl~~ll  173 (264)
T KOG2361|consen  103 CDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---------SAIHPEKMQSVIKNLRTLL  173 (264)
T ss_pred             cCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---------eccChHHHHHHHHHHHHHh
Confidence            58999999998877532    3445567653   346789999999999999         7889999999999999988


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       174 K  174 (264)
T KOG2361|consen  174 K  174 (264)
T ss_pred             C
Confidence            5

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.52  E-value=0.039  Score=38.72  Aligned_cols=43  Identities=19%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCC-CCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPF-RAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf-~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++..  ..+++++|+.+.++- ..+.||.|+++.
T Consensus       116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704       116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECC
Confidence            5999999999997742  247899997544431 246799999995

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PLN02366 spermidine synthase

Probab=95.40  E-value=0.021  Score=41.54  Aligned_cols=66  Identities=21%  Similarity=0.217  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~   68 (77)
                      +||+++|++.|++..         +..+++.+|+.+-+. ..++.||+|++-..-     +    ..|...|  ++||+.
T Consensus       121 VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~d-----p----~~~~~~L~t~ef~~~  191 (308)
T PLN02366        121 CEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSD-----P----VGPAQELFEKPFFES  191 (308)
T ss_pred             EECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCC-----C----CCchhhhhHHHHHHH
Confidence            589999999999864         235788899532222 125789999986432     2    1223333  678888


Q ss_pred             HHHHHhh
Q psy4109          69 LFACLWS   75 (77)
Q Consensus        69 l~~~L~~   75 (77)
                      ++++|+.
T Consensus       192 ~~~~L~p  198 (308)
T PLN02366        192 VARALRP  198 (308)
T ss_pred             HHHhcCC
Confidence            8888763

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.36  E-value=0.069  Score=37.47  Aligned_cols=65  Identities=9%  Similarity=0.004  Sum_probs=48.8

Q ss_pred             CCCCHHHHHHHHhc-----------------CCCCcEEEccCCCCCCCC---CCceeeeeeccchhhhcccCCCCCChHH
Q psy4109           1 MKKNAFYTNVARDR-----------------EVEGDLVLSDLGQGVPFR---AGAFDGAISISALQWLCNADKTSHNPAK   60 (77)
Q Consensus         1 iDiS~~ML~~A~~r-----------------~~~~~~~~~D~~~~lPf~---~~sFD~v~s~~~l~w~~d~~~~~~~p~~   60 (77)
                      +|+|+.-++.+.++                 +..++++++|+ ..++..   -+.||+|+=..+|+         +.|+.
T Consensus        71 vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~-f~l~~~~~~~~~fD~VyDra~~~---------Alpp~  140 (226)
T PRK13256         71 IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI-FNLPKIANNLPVFDIWYDRGAYI---------ALPND  140 (226)
T ss_pred             EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC-cCCCccccccCCcCeeeeehhHh---------cCCHH
Confidence            58999999987552                 23458999998 567642   26899999988885         55677


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4109          61 RLYKFFSSLFACLWS   75 (77)
Q Consensus        61 ~l~~~~~~l~~~L~~   75 (77)
                      ...+..+.+++.|+.
T Consensus       141 ~R~~Y~~~l~~lL~p  155 (226)
T PRK13256        141 LRTNYAKMMLEVCSN  155 (226)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            788888888887763

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.33  E-value=0.056  Score=40.52  Aligned_cols=40  Identities=13%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC--CCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP--FRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP--f~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.    ....++++|+. .++  +.+++||.|++
T Consensus       274 ~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~-~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        274 LDIDAQRLERVRENLQRLGLKATVIVGDAR-DPAQWWDGQPFDRILL  319 (427)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEcCcc-cchhhcccCCCCEEEE
Confidence            599999999998774    23478899974 443  35678999994

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.20  E-value=0.019  Score=39.88  Aligned_cols=57  Identities=12%  Similarity=-0.020  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.....+  .+. -.++..+.+||.|+++...              ..+..++..+++.|+
T Consensus       148 iDis~~~l~~A~~n~~~~~~--~~~-~~~~~~~~~fD~Vvani~~--------------~~~~~l~~~~~~~Lk  204 (250)
T PRK00517        148 VDIDPQAVEAARENAELNGV--ELN-VYLPQGDLKADVIVANILA--------------NPLLELAPDLARLLK  204 (250)
T ss_pred             EECCHHHHHHHHHHHHHcCC--Cce-EEEccCCCCcCEEEEcCcH--------------HHHHHHHHHHHHhcC
Confidence            59999999999987521111  010 1123333489999998542              234566777777765

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=95.13  E-value=0.013  Score=44.01  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCC---CCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQG---VPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~---lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.   +|+.+++||+|+++
T Consensus       325 vD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        325 VEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            599999999998763     2468999997432   34667889999875

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.98  E-value=0.12  Score=29.22  Aligned_cols=48  Identities=29%  Similarity=0.373  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHHhcC--CC---CcEEEccCCC-CCCCCC-Cceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE--VE---GDLVLSDLGQ-GVPFRA-GAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--~~---~~~~~~D~~~-~lPf~~-~sFD~v~s~~~l~w~   48 (77)
                      +|+++.|++.++.+.  ..   ..++.+|... .+|+.+ ..||.+.+....+|.
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  132 (257)
T COG0500          78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL  132 (257)
T ss_pred             EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcC
Confidence            589999999966554  21   3678888643 288888 599999555555544

>PRK04266 fibrillarin; Provisional

Probab=94.73  E-value=0.053  Score=37.72  Aligned_cols=42  Identities=7%  Similarity=-0.149  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCC---CCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQG---VPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~---lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.+.++.   .+..++.+|+..+   .++ +++||.|++..
T Consensus       102 vD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~  149 (226)
T PRK04266        102 VEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDV  149 (226)
T ss_pred             EECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECC
Confidence            599999998654332   3567889997432   122 45699999753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.72  E-value=0.063  Score=40.32  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC----CCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP----FRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP----f~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.     .+..++++|+ ..++    +.+++||.|+.
T Consensus       283 ~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~~~fD~Vl~  331 (434)
T PRK14901        283 VDRSASRLKKLQENAQRLGLKSIKILAADS-RNLLELKPQWRGYFDRILL  331 (434)
T ss_pred             EcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-hhcccccccccccCCEEEE
Confidence            599999999998763     1357888997 4555    55789999995

>KOG1975|consensus

Probab=94.71  E-value=0.037  Score=41.58  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHhcCC-----------CCcEEEccCC-----CCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV-----------EGDLVLSDLG-----QGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYK   64 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----------~~~~~~~D~~-----~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~   64 (77)
                      +||+..-+++|++|.-           .+.++.||-.     +.+++.+..||.|-|-+++||.-       .-.+..++
T Consensus       146 iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF-------etee~ar~  218 (389)
T KOG1975|consen  146 IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAF-------ETEESARI  218 (389)
T ss_pred             eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeee-------ccHHHHHH
Confidence            6899999999998841           2467888743     35677788899999999999953       23577889


Q ss_pred             HHHHHHHHHh
Q psy4109          65 FFSSLFACLW   74 (77)
Q Consensus        65 ~~~~l~~~L~   74 (77)
                      ++.++.++|+
T Consensus       219 ~l~Nva~~Lk  228 (389)
T KOG1975|consen  219 ALRNVAKCLK  228 (389)
T ss_pred             HHHHHHhhcC
Confidence            9999998885

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.58  E-value=0.039  Score=41.63  Aligned_cols=40  Identities=8%  Similarity=0.176  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCC-CCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVP-FRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lP-f~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++..     ..+++++|+ ..+| +.+++||.|++
T Consensus       268 ~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da-~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        268 VDISREKIQLVEKHAKRLKLSSIEIKIADA-ERLTEYVQDTFDRILV  313 (431)
T ss_pred             EECCHHHHHHHHHHHHHcCCCeEEEEECch-hhhhhhhhccCCEEEE
Confidence            5999999999987741     247888997 4566 56788999985

>PRK04148 hypothetical protein; Provisional

Probab=94.56  E-value=0.082  Score=34.54  Aligned_cols=58  Identities=17%  Similarity=0.018  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|++++.++.|++++  .+++++|+.++-+---..+|+|.|+              .|+..|.+.+-+|.+..+
T Consensus        45 IDi~~~aV~~a~~~~--~~~v~dDlf~p~~~~y~~a~liysi--------------rpp~el~~~~~~la~~~~  102 (134)
T PRK04148         45 IDINEKAVEKAKKLG--LNAFVDDLFNPNLEIYKNAKLIYSI--------------RPPRDLQPFILELAKKIN  102 (134)
T ss_pred             EECCHHHHHHHHHhC--CeEEECcCCCCCHHHHhcCCEEEEe--------------CCCHHHHHHHHHHHHHcC
Confidence            599999999998886  5789999865332225568999988              467778888888777653

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.39  E-value=0.035  Score=40.65  Aligned_cols=44  Identities=9%  Similarity=-0.084  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+|++|++.|+++.     .+..++++|.. ..+...+.||+|++...+
T Consensus       111 VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~-~~~~~~~~fD~Ii~~~g~  159 (322)
T PRK13943        111 VEYSRKICEIAKRNVRRLGIENVIFVCGDGY-YGVPEFAPYDVIFVTVGV  159 (322)
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEeCChh-hcccccCCccEEEECCch
Confidence            589999999998753     13578889964 444456789999997654

>PLN02672 methionine S-methyltransferase

Probab=94.19  E-value=0.041  Score=46.20  Aligned_cols=48  Identities=17%  Similarity=-0.034  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHhcCC---------------------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDREV---------------------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------------------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|||++|++.|++|..                     ..+++++|+.+.++-....||.||||-  =|+.+
T Consensus       148 vDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNP--PYI~~  216 (1082)
T PLN02672        148 LDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCI--PQILN  216 (1082)
T ss_pred             EECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECC--CcCCC
Confidence            5999999999976631                     257899998654422224699999996  44443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=94.03  E-value=0.09  Score=36.99  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|.++..++.|++...     ..++++.-+ +.+--.++.||.|+.-.++.||         ..+.|..||++--+.|+
T Consensus        84 VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL-Q~f~P~~~~YDlIW~QW~lghL---------TD~dlv~fL~RCk~~L~  152 (218)
T PF05891_consen   84 VEPVEKFLEQAKEYLGKDNPRVGEFYCVGL-QDFTPEEGKYDLIWIQWCLGHL---------TDEDLVAFLKRCKQALK  152 (218)
T ss_dssp             EES-HHHHHHHHHHTCCGGCCEEEEEES-G-GG----TT-EEEEEEES-GGGS----------HHHHHHHHHHHHHHEE
T ss_pred             eccCHHHHHHHHHHhcccCCCcceEEecCH-hhccCCCCcEeEEEehHhhccC---------CHHHHHHHHHHHHHhCc
Confidence            4678899999985432     246777766 4343346799999987777655         45778889998887775

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=94.00  E-value=0.043  Score=38.75  Aligned_cols=43  Identities=5%  Similarity=-0.106  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHhcC--CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE--VEGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|++++|++.++++.  .+.+++++|+ ..+++.+-.+|.|++|.-
T Consensus        70 vE~d~~~~~~~~~~~~~~~v~~i~~D~-~~~~~~~~~~~~vv~NlP  114 (272)
T PRK00274         70 VEIDRDLAPILAETFAEDNLTIIEGDA-LKVDLSELQPLKVVANLP  114 (272)
T ss_pred             EECCHHHHHHHHHhhccCceEEEEChh-hcCCHHHcCcceEEEeCC
Confidence            589999999998875  3568999997 567765533688988853

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.86  E-value=0.073  Score=36.44  Aligned_cols=46  Identities=15%  Similarity=0.095  Sum_probs=26.6

Q ss_pred             cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          19 DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        19 ~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+.+.|+.+ .+...+.||+|+|--|+-|+..         +..++.+.+++++|+
T Consensus       121 ~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~---------~~~~~vl~~l~~~L~  166 (196)
T PF01739_consen  121 RFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP---------ETQQRVLRRLHRSLK  166 (196)
T ss_dssp             EEEE--TT--S------EEEEEE-SSGGGS-H---------HHHHHHHHHHGGGEE
T ss_pred             EEEecccCC-CCcccCCccEEEecCEEEEeCH---------HHHHHHHHHHHHHcC
Confidence            567778755 3446788999999999999843         445677777777764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=93.82  E-value=0.076  Score=37.16  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+++.|++.++++.   .+.+++++|+ ..+++.  .||.|+||.-++
T Consensus        57 vEid~~~~~~l~~~~~~~~~v~ii~~D~-~~~~~~--~~d~Vv~NlPy~  102 (258)
T PRK14896         57 IELDPRLAEFLRDDEIAAGNVEIIEGDA-LKVDLP--EFNKVVSNLPYQ  102 (258)
T ss_pred             EECCHHHHHHHHHHhccCCCEEEEEecc-ccCCch--hceEEEEcCCcc
Confidence            589999999999875   2467899997 567764  489999997654

>PLN02823 spermine synthase

Probab=93.81  E-value=0.082  Score=39.00  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +||.+++++.|++..         +..+++.+|..+-+...++.||+|+.-.
T Consensus       133 VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~  184 (336)
T PLN02823        133 CDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL  184 (336)
T ss_pred             EECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence            589999999999764         2357888997555555678899999874

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=93.72  E-value=0.13  Score=38.70  Aligned_cols=42  Identities=10%  Similarity=-0.016  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.++++.     ...+++++|+.+..+..+++||.|++.
T Consensus       281 vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        281 LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            599999999998763     135788999743222223789999975

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=93.22  E-value=0.038  Score=39.72  Aligned_cols=41  Identities=10%  Similarity=-0.038  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCC-CCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPF-RAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf-~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.     .+.+++++|+. .++. .++.||.|+.+
T Consensus       201 vD~s~~av~~A~~n~~~~~l~~v~~~~~D~~-~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        201 IEISAEAIACAKQSAAELGLTNVQFQALDST-QFATAQGEVPDLVLVN  247 (315)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCceEEEEcCHH-HHHHhcCCCCeEEEEC
Confidence            599999999998763     24689999974 3332 34679999977

>PRK07402 precorrin-6B methylase; Provisional

Probab=93.22  E-value=0.098  Score=34.79  Aligned_cols=41  Identities=12%  Similarity=0.053  Sum_probs=26.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s   41 (77)
                      +|+|++|++.|+++.     .+.+++.+|+.+.++.....+|.++.
T Consensus        70 vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~  115 (196)
T PRK07402         70 IERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI  115 (196)
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence            599999999998763     23578888874334333344566543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=93.12  E-value=0.24  Score=39.52  Aligned_cols=66  Identities=17%  Similarity=0.069  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCC--CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFR--AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~--~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|++++|++.|+++.    .  ...+.++|+. .++..  .++||.|++|.=  |-...     .-...+..+|..+-+.
T Consensus       262 ~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~-~~~~~~~~~~~d~IvtNPP--Yg~r~-----~~~~~l~~lY~~lg~~  333 (702)
T PRK11783        262 SDIDPRVIQAARKNARRAGVAELITFEVKDVA-DLKNPLPKGPTGLVISNPP--YGERL-----GEEPALIALYSQLGRR  333 (702)
T ss_pred             EECCHHHHHHHHHHHHHcCCCcceEEEeCChh-hcccccccCCCCEEEECCC--CcCcc-----CchHHHHHHHHHHHHH
Confidence            599999999999884    2  2468899974 56543  468999999952  22111     1134566666666665


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       334 lk  335 (702)
T PRK11783        334 LK  335 (702)
T ss_pred             HH
Confidence            54

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=93.09  E-value=0.21  Score=35.08  Aligned_cols=40  Identities=13%  Similarity=-0.069  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.     .+..++++|+ ..++...+.||.|+.
T Consensus       102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446       102 NEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILL  146 (264)
T ss_pred             EcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEE
Confidence            599999999998763     2346788886 456655677999985

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.91  E-value=0.09  Score=41.94  Aligned_cols=43  Identities=14%  Similarity=0.027  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.    .   ..+++++|+.+-+.-.+++||.||+..
T Consensus       567 vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        567 VDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             EeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            699999999999874    2   257899997432322267899999974

>KOG2352|consensus

Probab=92.84  E-value=0.38  Score=37.44  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+--++....++    +...+...|+ ..+.|.+++||.++-.+++.-+......--. ....-..+..+++.|+
T Consensus        77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~~l~fedESFdiVIdkGtlDal~~de~a~~~-~~~v~~~~~eVsrvl~  152 (482)
T KOG2352|consen   77 IDSSSVVVAAMQVRNAKERPEMQMVEMDM-DQLVFEDESFDIVIDKGTLDALFEDEDALLN-TAHVSNMLDEVSRVLA  152 (482)
T ss_pred             ccccHHHHHHHHhccccCCcceEEEEecc-hhccCCCcceeEEEecCccccccCCchhhhh-hHHhhHHHhhHHHHhc
Confidence            588888888877665    2357888998 5799999999999999999876432211100 1445566777777664

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=92.75  E-value=0.13  Score=38.55  Aligned_cols=40  Identities=10%  Similarity=-0.012  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHhcCC----CCcE--EEccCCCCCCC--CCCceeeeee
Q psy4109           1 MKKNAFYTNVARDREV----EGDL--VLSDLGQGVPF--RAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~--~~~D~~~~lPf--~~~sFD~v~s   41 (77)
                      +|+|++|++.++++..    ...+  +.+|. ..+++  .+++||.|++
T Consensus       268 ~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       268 LDIHEHRLKRVYENLKRLGLTIKAETKDGDG-RGPSQWAENEQFDRILL  315 (426)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEecccc-ccccccccccccCEEEE
Confidence            5999999999987742    2223  55665 33443  5788999984

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=92.70  E-value=0.32  Score=35.72  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHhcC----CCC-cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE----VEG-DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~-~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|..-++.||++.    +.. .++..|..+  |..+ .||.|+||-=||      .........-.++|..-.+.|++
T Consensus       188 vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~--~v~~-kfd~IisNPPfh------~G~~v~~~~~~~~i~~A~~~L~~  258 (300)
T COG2813         188 VDVNARAVESARKNLAANGVENTEVWASNLYE--PVEG-KFDLIISNPPFH------AGKAVVHSLAQEIIAAAARHLKP  258 (300)
T ss_pred             EecCHHHHHHHHHhHHHcCCCccEEEEecccc--cccc-cccEEEeCCCcc------CCcchhHHHHHHHHHHHHHhhcc
Confidence            589999999998774    333 578888744  5556 999999997764      11223333444788887777764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=92.41  E-value=0.11  Score=37.19  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|||+.-|+.|++|..     ....+++|+-+  +.+. .||.|+||-  =|++..
T Consensus       140 ~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~--~~~~-~fDlIVsNP--PYip~~  190 (280)
T COG2890         140 VDISPDALALARENAERNGLVRVLVVQSDLFE--PLRG-KFDLIVSNP--PYIPAE  190 (280)
T ss_pred             EECCHHHHHHHHHHHHHcCCccEEEEeeeccc--ccCC-ceeEEEeCC--CCCCCc
Confidence            5999999999987742     12467677643  3333 899999997  566654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.37  E-value=0.13  Score=38.83  Aligned_cols=42  Identities=12%  Similarity=-0.008  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +||++.|++.|+.|.    +  ..++.++|+ ..++-+-+.+|.+|||.
T Consensus       260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~-~~l~~~~~~~gvvI~NP  307 (381)
T COG0116         260 SDIDPRHIEGAKANARAAGVGDLIEFKQADA-TDLKEPLEEYGVVISNP  307 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcCCCceEEEEEcch-hhCCCCCCcCCEEEeCC
Confidence            599999999999874    2  248999998 45653337899999996

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=92.25  E-value=0.091  Score=37.04  Aligned_cols=47  Identities=13%  Similarity=0.198  Sum_probs=33.0

Q ss_pred             cEEEccCCCCCCC---CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          19 DLVLSDLGQGVPF---RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        19 ~~~~~D~~~~lPf---~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+.++|.- ..|.   .++.||+|++++|+.|++++...+        +++.+.++-|+
T Consensus        86 ~I~qqDFm-~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG--------~Ml~r~~~fL~  135 (219)
T PF11968_consen   86 GILQQDFM-ERPLPKNESEKFDVISLSLVLNFVPDPKQRG--------EMLRRAHKFLK  135 (219)
T ss_pred             Cceeeccc-cCCCCCCcccceeEEEEEEEEeeCCCHHHHH--------HHHHHHHHHhC
Confidence            45677763 3444   478999999999999997653222        56677776664

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=92.22  E-value=0.14  Score=36.67  Aligned_cols=63  Identities=11%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKF   65 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~   65 (77)
                      +++.++|.+.|+++.      .+++++++|+.+-.+ +.-.+||.|+||-=  |+.........+.+.+.++
T Consensus        74 VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP--yf~~~~~~~~~~~~~~Ar~  143 (248)
T COG4123          74 VEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP--YFKQGSRLNENPLRAIARH  143 (248)
T ss_pred             EEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC--CCCCccccCcChhhhhhhh
Confidence            578999999998874      246899999854222 34557999999983  4444333344555554443

>PTZ00146 fibrillarin; Provisional

Probab=92.09  E-value=0.23  Score=36.25  Aligned_cols=43  Identities=16%  Similarity=0.040  Sum_probs=29.6

Q ss_pred             CCCCHH----HHHHHHhcCCCCcEEEccCCCC--CCCCCCceeeeeeccc
Q psy4109           1 MKKNAF----YTNVARDREVEGDLVLSDLGQG--VPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~----ML~~A~~r~~~~~~~~~D~~~~--lPf~~~sFD~v~s~~~   44 (77)
                      +|+|++    |++.|+++ .+...+.+|+..+  .++..++||.|++..+
T Consensus       163 VD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        163 VEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             EECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence            588986    66777655 4678899997432  2223468999999764

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.01  E-value=0.38  Score=32.80  Aligned_cols=56  Identities=16%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             HHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           5 AFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         5 ~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      |++++.|++ ....+++-||+-+++|  .  +|+++...++|-+.         .+.-...+++++++|+
T Consensus       133 p~v~~~~~~-~~rv~~~~gd~f~~~P--~--~D~~~l~~vLh~~~---------d~~~~~iL~~~~~al~  188 (241)
T PF00891_consen  133 PEVIEQAKE-ADRVEFVPGDFFDPLP--V--ADVYLLRHVLHDWS---------DEDCVKILRNAAAALK  188 (241)
T ss_dssp             HHHHCCHHH-TTTEEEEES-TTTCCS--S--ESEEEEESSGGGS----------HHHHHHHHHHHHHHSE
T ss_pred             Hhhhhcccc-ccccccccccHHhhhc--c--ccceeeehhhhhcc---------hHHHHHHHHHHHHHhC
Confidence            677777777 4457899999855443  3  99999999998774         4566778999998886

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.00  E-value=0.072  Score=33.91  Aligned_cols=35  Identities=20%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          35 AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        35 sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .||+|+|-+|--|+-     -....+.|++||+++|+.|+
T Consensus         1 ~yDvilclSVtkWIH-----Ln~GD~Gl~~~f~~~~~~L~   35 (110)
T PF06859_consen    1 QYDVILCLSVTKWIH-----LNWGDEGLKRFFRRIYSLLR   35 (110)
T ss_dssp             -EEEEEEES-HHHHH-----HHHHHHHHHHHHHHHHHHEE
T ss_pred             CccEEEEEEeeEEEE-----ecCcCHHHHHHHHHHHHhhC
Confidence            389999999999962     13456899999999999885

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG3420|consensus

Probab=91.78  E-value=0.82  Score=31.18  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +||.|+-|+++++|.    .+.+++++|+. .+-+..+.||.++-+.-|
T Consensus        77 fDIdpeALEIf~rNaeEfEvqidlLqcdil-dle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   77 FDIDPEALEIFTRNAEEFEVQIDLLQCDIL-DLELKGGIFDTAVINPPF  124 (185)
T ss_pred             eecCHHHHHHHhhchHHhhhhhheeeeecc-chhccCCeEeeEEecCCC
Confidence            599999999999885    35689999995 577788999999988644

>KOG3045|consensus

Probab=91.22  E-value=0.37  Score=35.50  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          18 GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      -+++.+|++ .+|..|+|.|.+|.++++.        +    ..|..|+.+.++.|+
T Consensus       212 ~~V~~cDm~-~vPl~d~svDvaV~CLSLM--------g----tn~~df~kEa~RiLk  255 (325)
T KOG3045|consen  212 ERVIACDMR-NVPLEDESVDVAVFCLSLM--------G----TNLADFIKEANRILK  255 (325)
T ss_pred             Cceeecccc-CCcCccCcccEEEeeHhhh--------c----ccHHHHHHHHHHHhc
Confidence            378999996 6999999999999998763        1    346678888888775

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=90.98  E-value=0.22  Score=34.33  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+.+++.+.|+++..     +..++++|....+| ..+.||.|++..+.
T Consensus       103 vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~apfD~I~v~~a~  151 (209)
T PF01135_consen  103 VERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAPFDRIIVTAAV  151 (209)
T ss_dssp             EESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-SEEEEEESSBB
T ss_pred             ECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCCcCEEEEeecc
Confidence            4788999999998852     45789999755555 46789999999876

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=90.45  E-value=0.21  Score=34.70  Aligned_cols=42  Identities=17%  Similarity=0.023  Sum_probs=31.3

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC-----CCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF-----RAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf-----~~~sFD~v~s~   42 (77)
                      +|+++++++.|+++.    .  ..+++.+|+.+.+|-     .+++||.||..
T Consensus        99 iD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiD  151 (234)
T PLN02781         99 IDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVD  151 (234)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEEC
Confidence            589999999998774    1  357899998654442     15789999876

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=90.39  E-value=0.69  Score=33.49  Aligned_cols=59  Identities=8%  Similarity=-0.041  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +++|+.|...-++|+  .+++-.|   ...-.+..||+|.|.-++--+.+|           ..+++.|+++|+.
T Consensus       122 TE~S~~Mr~rL~~kg--~~vl~~~---~w~~~~~~fDvIscLNvLDRc~~P-----------~~LL~~i~~~l~p  180 (265)
T PF05219_consen  122 TEASPPMRWRLSKKG--FTVLDID---DWQQTDFKFDVISCLNVLDRCDRP-----------LTLLRDIRRALKP  180 (265)
T ss_pred             ecCCHHHHHHHHhCC--CeEEehh---hhhccCCceEEEeehhhhhccCCH-----------HHHHHHHHHHhCC
Confidence            368999999988887  3344222   233346789999999999777665           3577777777753

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.23  E-value=0.27  Score=36.34  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=26.8

Q ss_pred             CCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          27 QGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        27 ~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +.+|. .++||.|||++||=|..+|       -    .++..|.++|+
T Consensus       175 E~Lp~-~~~FDtVF~MGVLYHrr~P-------l----~~L~~Lk~~L~  210 (315)
T PF08003_consen  175 EDLPN-LGAFDTVFSMGVLYHRRSP-------L----DHLKQLKDSLR  210 (315)
T ss_pred             hhccc-cCCcCEEEEeeehhccCCH-------H----HHHHHHHHhhC
Confidence            57887 8899999999999887655       2    35555555554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG2899|consensus

Probab=90.12  E-value=0.69  Score=33.71  Aligned_cols=39  Identities=21%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          31 FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        31 f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +....||+|+|.++=-|+- ++    -..+.|++||++|++-|.
T Consensus       162 ~~~~~fDiIlcLSiTkWIH-LN----wgD~GL~~ff~kis~ll~  200 (288)
T KOG2899|consen  162 MIQPEFDIILCLSITKWIH-LN----WGDDGLRRFFRKISSLLH  200 (288)
T ss_pred             hccccccEEEEEEeeeeEe-cc----cccHHHHHHHHHHHHhhC
Confidence            4567899999999888862 22    124789999999998875

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=90.01  E-value=0.17  Score=39.53  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=33.8

Q ss_pred             CCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeecc-chhhhccc
Q psy4109           2 KKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNA   51 (77)
Q Consensus         2 DiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~   51 (77)
                      |..+...+.|-+|+..+-+-..- ++.|||++++||.|-|+- .+.|..+.
T Consensus       149 d~~~~qvqfaleRGvpa~~~~~~-s~rLPfp~~~fDmvHcsrc~i~W~~~~  198 (506)
T PF03141_consen  149 DEHEAQVQFALERGVPAMIGVLG-SQRLPFPSNAFDMVHCSRCLIPWHPND  198 (506)
T ss_pred             cCCchhhhhhhhcCcchhhhhhc-cccccCCccchhhhhcccccccchhcc
Confidence            44556778888998654322211 478999999999998877 45666553

; GO: 0008168 methyltransferase activity

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=89.94  E-value=0.12  Score=36.19  Aligned_cols=42  Identities=19%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEE-ccCCCCCC-CCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVL-SDLGQGVP-FRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~-~D~~~~lP-f~~~sFD~v~s~   42 (77)
                      +|++++|.+.|+++..      ...++. +|..+.+- +.+++||.||-=
T Consensus        90 iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID  139 (219)
T COG4122          90 IERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID  139 (219)
T ss_pred             EeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence            6899999999998852      135666 57655444 467999999854

>TIGR00755 ksgA dimethyladenosine transferase

Probab=89.90  E-value=0.34  Score=33.65  Aligned_cols=43  Identities=12%  Similarity=0.117  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCcee---eeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFD---GAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD---~v~s~~~l~   46 (77)
                      +|+++.|++.++++.   .+.+++++|+ ..+|+.  .||   .|+|+.-++
T Consensus        57 iE~d~~~~~~l~~~~~~~~~v~v~~~D~-~~~~~~--~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        57 IEIDPRLAEILRKLLSLYERLEVIEGDA-LKVDLP--DFPKQLKVVSNLPYN  105 (253)
T ss_pred             EECCHHHHHHHHHHhCcCCcEEEEECch-hcCChh--HcCCcceEEEcCChh
Confidence            589999999998774   3457899997 457764  577   899987653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=89.46  E-value=0.29  Score=35.52  Aligned_cols=49  Identities=22%  Similarity=0.288  Sum_probs=37.3

Q ss_pred             CcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          18 GDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        18 ~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+++.||+.+-.+ |.|.+||+|+-        ||-+.|+...=.=.+|+.++|+.|+
T Consensus       187 i~iilGD~~e~V~~~~D~sfDaIiH--------DPPRfS~AgeLYseefY~El~RiLk  236 (287)
T COG2521         187 IKIILGDAYEVVKDFDDESFDAIIH--------DPPRFSLAGELYSEEFYRELYRILK  236 (287)
T ss_pred             cEEecccHHHHHhcCCccccceEee--------CCCccchhhhHhHHHHHHHHHHHcC
Confidence            4789999766555 88999999963        5666676665566788889988886

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=89.20  E-value=0.14  Score=38.11  Aligned_cols=42  Identities=10%  Similarity=0.026  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCC---CCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQG---VPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~---lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.   +++.+++||.|+..
T Consensus       320 vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       320 IEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             EEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            589999999999763     2468999997432   23556789999853

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.17  E-value=0.54  Score=32.88  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +++.++..+.|+++.     .+..++++|....+| ..+.||.|+...+.
T Consensus       100 iEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaaa  148 (209)
T COG2518         100 IERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAAA  148 (209)
T ss_pred             EEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEeecc
Confidence            356678888898874     246889999766776 46889999999875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=88.81  E-value=0.39  Score=34.70  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+++.|++.++++.      .+.+++++|+. ..++  ..||.|++|.-++
T Consensus        64 vEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal-~~~~--~~~d~VvaNlPY~  112 (294)
T PTZ00338         64 IEIDPRMVAELKKRFQNSPLASKLEVIEGDAL-KTEF--PYFDVCVANVPYQ  112 (294)
T ss_pred             EECCHHHHHHHHHHHHhcCCCCcEEEEECCHh-hhcc--cccCEEEecCCcc
Confidence            589999999998763      23578999973 4543  4689999986543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=88.28  E-value=0.21  Score=34.13  Aligned_cols=44  Identities=2%  Similarity=-0.132  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|++++.++.|+++.     .+.+++++|+.+.++...++||.|+++.=
T Consensus        82 vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            588999999988763     23578999975444433567999998854

>KOG1269|consensus

Probab=87.54  E-value=0.61  Score=34.92  Aligned_cols=43  Identities=23%  Similarity=0.543  Sum_probs=33.8

Q ss_pred             cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109          19 DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus        19 ~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      .++.+|.. ..||.+++||++-++-+.+|..+.           ...++++|+++
T Consensus       163 ~~~~~~~~-~~~fedn~fd~v~~ld~~~~~~~~-----------~~~y~Ei~rv~  205 (364)
T KOG1269|consen  163 NFVVADFG-KMPFEDNTFDGVRFLEVVCHAPDL-----------EKVYAEIYRVL  205 (364)
T ss_pred             ceehhhhh-cCCCCccccCcEEEEeecccCCcH-----------HHHHHHHhccc
Confidence            55888985 689999999999999999998654           24666666654

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=87.47  E-value=0.37  Score=35.37  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=14.9

Q ss_pred             CCCCceeeeeeccchhhhcc
Q psy4109          31 FRAGAFDGAISISALQWLCN   50 (77)
Q Consensus        31 f~~~sFD~v~s~~~l~w~~d   50 (77)
                      |+++|.|.++|..++||+..
T Consensus       103 fP~~Svh~~~Ss~alHWLS~  122 (334)
T PF03492_consen  103 FPSNSVHFGHSSYALHWLSQ  122 (334)
T ss_dssp             S-TT-EEEEEEES-TTB-SS
T ss_pred             CCCCceEEEEEechhhhccc
Confidence            68999999999999999975

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=86.78  E-value=0.9  Score=32.10  Aligned_cols=44  Identities=18%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          18 GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      -.++.+|+ ..+|..+++.|++|.+++|.-            ..+..|+.+-++.|+
T Consensus       106 ~~Vtacdi-a~vPL~~~svDv~VfcLSLMG------------Tn~~~fi~EA~RvLK  149 (219)
T PF05148_consen  106 PRVTACDI-ANVPLEDESVDVAVFCLSLMG------------TNWPDFIREANRVLK  149 (219)
T ss_dssp             TTEEES-T-TS-S--TT-EEEEEEES---S------------S-HHHHHHHHHHHEE
T ss_pred             CCEEEecC-ccCcCCCCceeEEEEEhhhhC------------CCcHHHHHHHHheec
Confidence            36899999 479999999999999987742            123446666666654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=85.48  E-value=0.27  Score=36.96  Aligned_cols=43  Identities=16%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCC-C--CCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVP-F--RAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lP-f--~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.    .   ..+++++|+.+-++ +  ..++||.||+..
T Consensus       249 VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP  301 (396)
T PRK15128        249 VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP  301 (396)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence            599999999998763    2   24689999743232 1  356899999874

>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin)

Probab=85.45  E-value=5.6  Score=25.14  Aligned_cols=70  Identities=6%  Similarity=0.002  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHhcCCCCc-EEEccCCCCCCCCCCceeeeeec---------------cchhh-hcccCCCCCCh---HHHH
Q psy4109           3 KNAFYTNVARDREVEGD-LVLSDLGQGVPFRAGAFDGAISI---------------SALQW-LCNADKTSHNP---AKRL   62 (77)
Q Consensus         3 iS~~ML~~A~~r~~~~~-~~~~D~~~~lPf~~~sFD~v~s~---------------~~l~w-~~d~~~~~~~p---~~~l   62 (77)
                      +++.+++..++++.... ..--.+.   +.....||.|+.+               ..++| ++||...+..+   .+..
T Consensus        39 ~~~~a~~~l~e~Gid~~~~~~~~l~---~~~~~~~D~vitm~~~~~~~~~~~p~~~~~~~w~i~DP~~~~g~~~~~~~~~  115 (129)
T TIGR02691        39 LNPNAVKAMKEVGIDISNQTSDLID---LDILNKADLVVTLCGDARDKCPATPPHVKREHWGLDDPARAEGTEEEKWAVF  115 (129)
T ss_pred             cCHHHHHHHHHcCCCcCCcccccCC---hhhcccCCEEEEeCchhccCCCccCCCCeEEECCCCCCCCCCCCHHHHHHHH
Confidence            67888888888874321 1100110   1122357777755               13577 66664444333   4444


Q ss_pred             HHHHHHHHHHHhh
Q psy4109          63 YKFFSSLFACLWS   75 (77)
Q Consensus        63 ~~~~~~l~~~L~~   75 (77)
                      ++.+..|.+++..
T Consensus       116 ~~~~~~I~~~v~~  128 (129)
T TIGR02691       116 RRVRDEIKERVKD  128 (129)
T ss_pred             HHHHHHHHHHHHh
Confidence            4555555555443

This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=84.43  E-value=1.8  Score=30.76  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHHHhcC---CCC---cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---VEG---DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~---~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|.|+.|++.++.-.   ...   ........+..++...  |.|+++.+|.=+.         .+....+.++|.+.+
T Consensus        64 vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~s~~L~EL~---------~~~r~~lv~~LW~~~  131 (274)
T PF09243_consen   64 VDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIASYVLNELP---------SAARAELVRSLWNKT  131 (274)
T ss_pred             ecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEEehhhhcCC---------chHHHHHHHHHHHhc
Confidence            689999999887432   111   1111111122344333  9999999985442         244455666665544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=83.76  E-value=1.1  Score=31.26  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+.+++++.|+++..    ..+++.+|+.+    .++.||.++-|-=
T Consensus        74 vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~----~~~~~dtvimNPP  117 (198)
T COG2263          74 VDIDPEALEIARANAEELLGDVEFVVADVSD----FRGKFDTVIMNPP  117 (198)
T ss_pred             EecCHHHHHHHHHHHHhhCCceEEEEcchhh----cCCccceEEECCC
Confidence            5899999999998864    46899999743    3677887777653

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=81.94  E-value=3.1  Score=29.78  Aligned_cols=62  Identities=18%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             CCCCHHHHHHH----HhcCCCCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVA----RDREVEGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A----~~r~~~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +||.+.+|+.-    ++.+...+.++.|+.++||-. -+.||.+++--            +--.+.++-|+++=-++|+
T Consensus        73 vDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP------------PyT~~G~~LFlsRgi~~Lk  139 (243)
T PF01861_consen   73 VDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP------------PYTPEGLKLFLSRGIEALK  139 (243)
T ss_dssp             E-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---------------SSHHHHHHHHHHHHHTB-
T ss_pred             EEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC------------CCCHHHHHHHHHHHHHHhC
Confidence            47888888764    444556789999998888843 68899999864            2334666667766655554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=81.90  E-value=0.64  Score=34.38  Aligned_cols=42  Identities=7%  Similarity=-0.050  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|+.+++.|+++.    . +.+++++|+.+.++-..+.||.|+..
T Consensus       261 vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       261 IEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            589999999998764    1 45789999743233223469998876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=81.44  E-value=1.3  Score=31.98  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +||.+.+++.||+-.+         ..+++.+|..+=+.-...+||+|+.-++     |+.    .|.+.|  ++||+.+
T Consensus       106 VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t-----dp~----gp~~~Lft~eFy~~~  176 (282)
T COG0421         106 VEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST-----DPV----GPAEALFTEEFYEGC  176 (282)
T ss_pred             EEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC-----CCC----CcccccCCHHHHHHH
Confidence            5899999999998753         2366777754434333448999999854     331    333333  6789999


Q ss_pred             HHHHhh
Q psy4109          70 FACLWS   75 (77)
Q Consensus        70 ~~~L~~   75 (77)
                      +++|+.
T Consensus       177 ~~~L~~  182 (282)
T COG0421         177 RRALKE  182 (282)
T ss_pred             HHhcCC
Confidence            888864

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=81.01  E-value=0.96  Score=31.72  Aligned_cols=67  Identities=13%  Similarity=0.057  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCC-ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAG-AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~-sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +||.+.+++.|++-.         +..+++.+|...-+--..+ .||+|+.-..     |+.  +..+.---++||+.+.
T Consensus       106 VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~-----dp~--~~~~~l~t~ef~~~~~  178 (246)
T PF01564_consen  106 VEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLT-----DPD--GPAPNLFTREFYQLCK  178 (246)
T ss_dssp             EES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESS-----STT--SCGGGGSSHHHHHHHH
T ss_pred             EecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCC-----CCC--CCcccccCHHHHHHHH
Confidence            589999999998753         2347888885332223344 8999998653     211  2222223367888888


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      ++|+
T Consensus       179 ~~L~  182 (246)
T PF01564_consen  179 RRLK  182 (246)
T ss_dssp             HHEE
T ss_pred             hhcC
Confidence            8775

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=80.89  E-value=2.1  Score=29.56  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHh-cCC----------------CCcEEEccCCCCCCCCC-CceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109           1 MKKNAFYTNVARD-REV----------------EGDLVLSDLGQGVPFRA-GAFDGAISISALQWLCNADKTSHNPAKRL   62 (77)
Q Consensus         1 iDiS~~ML~~A~~-r~~----------------~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~w~~d~~~~~~~p~~~l   62 (77)
                      +|+|+.-++.|.+ ++.                ..++++||. ..++-.. +.||+|+=-.+|+         ..|++..
T Consensus        65 vDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf-F~l~~~~~g~fD~iyDr~~l~---------Alpp~~R  134 (218)
T PF05724_consen   65 VDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF-FELPPEDVGKFDLIYDRTFLC---------ALPPEMR  134 (218)
T ss_dssp             EES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T-TTGGGSCHHSEEEEEECSSTT---------TS-GGGH
T ss_pred             EecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc-ccCChhhcCCceEEEEecccc---------cCCHHHH
Confidence            5899999999843 321                125788998 5565433 5799999888774         3455666


Q ss_pred             HHHHHHHHHHHh
Q psy4109          63 YKFFSSLFACLW   74 (77)
Q Consensus        63 ~~~~~~l~~~L~   74 (77)
                      .+..+.+++.|+
T Consensus       135 ~~Ya~~l~~ll~  146 (218)
T PF05724_consen  135 ERYAQQLASLLK  146 (218)
T ss_dssp             HHHHHHHHHCEE
T ss_pred             HHHHHHHHHHhC
Confidence            666666666554

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG3191|consensus

Probab=80.65  E-value=3.8  Score=28.70  Aligned_cols=67  Identities=18%  Similarity=0.119  Sum_probs=43.3

Q ss_pred             CCCCHHHHHH----HHhcCCCCcEEEccCCCCCCCCCCceeeeeeccc----------hhhhcccCCCCCChHHHHHHHH
Q psy4109           1 MKKNAFYTNV----ARDREVEGDLVLSDLGQGVPFRAGAFDGAISISA----------LQWLCNADKTSHNPAKRLYKFF   66 (77)
Q Consensus         1 iDiS~~ML~~----A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~----------l~w~~d~~~~~~~p~~~l~~~~   66 (77)
                      +||+|.-++.    |+.+....+.++.|+...+  ++++.|.++-|--          .+|+.-.-..+....+...+++
T Consensus        74 tDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll  151 (209)
T KOG3191|consen   74 TDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLL  151 (209)
T ss_pred             ecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHH
Confidence            5899987766    5555566789999986655  6799999888751          2333332234455666666666


Q ss_pred             HHH
Q psy4109          67 SSL   69 (77)
Q Consensus        67 ~~l   69 (77)
                      ..+
T Consensus       152 ~~v  154 (209)
T KOG3191|consen  152 PQV  154 (209)
T ss_pred             hhh
Confidence            443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=80.53  E-value=3.1  Score=30.61  Aligned_cols=65  Identities=8%  Similarity=0.066  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHhcCC-----CC--cEEEccCCCCCCC-----CCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV-----EG--DLVLSDLGQGVPF-----RAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~--~~~~~D~~~~lPf-----~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~   67 (77)
                      +|||.++|+.+.++..     ..  .-++||..+.+.+     ..+....++..+ +|         +.-++..-..|++
T Consensus       110 lDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsi---------GNf~~~ea~~fL~  180 (319)
T TIGR03439       110 LDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSI---------GNFSRPEAAAFLA  180 (319)
T ss_pred             EECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccc---------cCCCHHHHHHHHH
Confidence            6999999999987753     22  3377777544321     123456666655 55         4445677778999


Q ss_pred             HHHH-HHh
Q psy4109          68 SLFA-CLW   74 (77)
Q Consensus        68 ~l~~-~L~   74 (77)
                      ++.+ .|+
T Consensus       181 ~~~~~~l~  188 (319)
T TIGR03439       181 GFLATALS  188 (319)
T ss_pred             HHHHhhCC
Confidence            9988 764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02476 O-methyltransferase

Probab=80.49  E-value=0.43  Score=34.49  Aligned_cols=42  Identities=12%  Similarity=0.067  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC-----CCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF-----RAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf-----~~~sFD~v~s~   42 (77)
                      +|+++++.+.|+++.    .  ..+++.||+.+-||-     .+++||.||--
T Consensus       149 iE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFID  201 (278)
T PLN02476        149 CERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVD  201 (278)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEEC
Confidence            588999999998764    1  357888997665552     14689998864

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=80.47  E-value=8.9  Score=27.46  Aligned_cols=42  Identities=26%  Similarity=0.264  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCCCcEEEccCCCCCCCCC-----Cceeeeeeccchhhhc
Q psy4109           6 FYTNVARDREVEGDLVLSDLGQGVPFRA-----GAFDGAISISALQWLC   49 (77)
Q Consensus         6 ~ML~~A~~r~~~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~l~w~~   49 (77)
                      ++-+..|++.  .+++.+|+.+.-|+.+     ..||.|+|.+.+.-..
T Consensus       126 e~e~~lR~~V--k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~  172 (256)
T PF01234_consen  126 EKEEKLRRAV--KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC  172 (256)
T ss_dssp             HHHHHHHHHE--EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred             hHHHHHHHhh--ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence            4444444443  3588899988777765     3599999999998763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.05
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.0
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.98
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.92
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.92
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.91
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.9
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.89
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.88
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.86
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.86
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.85
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.82
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.81
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.81
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.79
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.79
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.79
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.78
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.78
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.77
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.75
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.75
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.73
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.72
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.72
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.72
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.7
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.7
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.7
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.7
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.7
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.69
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.69
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.69
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.66
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.65
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.65
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.63
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.63
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.63
3ocj_A	305	Putative exported protein; structural genomics, PS	98.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.62
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.6
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.6
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.59
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.57
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.54
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.54
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.53
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.52
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.51
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.51
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.51
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.48
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.47
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.46
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.46
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.46
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.46
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.45
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.44
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.43
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.42
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.42
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.42
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.38
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.33
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.31
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.3
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.28
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.26
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.22
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.21
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.16
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.16
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.15
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.08
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.08
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.06
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.05
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.04
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.02
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.02
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.96
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.96
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.93
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.92
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.89
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.87
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.87
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.86
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.85
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.81
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.79
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.79
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.76
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.75
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.74
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.74
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.74
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.73
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.73
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.72
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.7
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.69
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.69
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.68
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.64
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.64
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.59
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.59
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.58
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.57
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.56
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.53
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.53
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.53
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.51
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.49
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.48
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.48
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.48
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.46
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.45
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.45
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.43
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.42
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.42
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.41
2o07_A	304	Spermidine synthase; structural genomics, structur	97.4
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.39
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.36
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.35
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.35
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.35
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.34
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.34
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.33
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.32
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.3
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.28
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.28
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.27
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.25
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.24
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.22
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.19
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.19
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.19
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.19
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.18
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.18
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.18
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.18
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.18
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.17
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.17
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.17
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.13
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.13
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.12
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.09
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.09
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.07
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.06
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.04
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.03
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.01
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.98
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.95
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.94
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.92
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.91
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.87
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.86
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.85
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.84
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.81
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.79
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.77
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.76
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.76
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.75
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.75
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.74
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.69
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.68
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.66
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.63
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.6
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.59
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.58
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.58
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.57
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.57
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.44
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	96.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.41
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.36
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.31
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.31
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.29
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.25
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.24
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.16
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.14
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.08
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	96.06
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	95.98
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	95.97
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.96
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.95
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	95.9
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.9
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.75
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	95.73
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.72
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.71
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.68
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.67
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.65
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.55
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.52
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.49
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.41
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	95.39
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	95.25
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	95.07
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	94.63
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	94.43
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	94.39
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	94.35
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	94.24
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	94.19
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	94.12
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	94.12
3ll7_A	410	Putative methyltransferase; methytransferase, stru	93.96
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	93.92
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	93.63
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	93.48
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	93.46
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	93.41
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	93.34
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	93.29
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	93.27
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	92.94
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	92.93
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	92.83
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	90.75
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	90.13
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	89.52
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	89.0
3khk_A	544	Type I restriction-modification system methylation	88.77
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	88.58
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	88.31
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	87.57
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	86.09
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	85.2
3k6r_A	278	Putative transferase PH0793; structural genomics,	84.2
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	83.16

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.07  E-value=4.4e-11  Score=76.36  Aligned_cols=62  Identities=10%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHhcCC-CCcEEEccCCCCCCC---CCCceeeeeeccchhhh-cccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV-EGDLVLSDLGQGVPF---RAGAFDGAISISALQWL-CNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-~~~~~~~D~~~~lPf---~~~sFD~v~s~~~l~w~-~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.. +.+++++|+ +.+|+   .+++||+|+|+.++||+ .++           ..+|+++++.|+
T Consensus        26 vD~s~~ml~~a~~~~~~~~~~~~~d~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------~~~l~~~~r~Lk   92 (176)
T 2ld4_A           26 VEALKGLVDKLQALTGNEGRVSVENI-KQLLQSAHKESSFDIILSGLVPGSTTLHS-----------AEILAEIARILR   92 (176)
T ss_dssp             HHHHHHHHHHHHHHTTTTSEEEEEEG-GGGGGGCCCSSCEEEEEECCSTTCCCCCC-----------HHHHHHHHHHEE
T ss_pred             eeCCHHHHHHHHHhcccCcEEEEech-hcCccccCCCCCEeEEEECChhhhcccCH-----------HHHHHHHHHHCC
Confidence            5899999999998863 478999998 57887   89999999999999998 543           568888888875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.05  E-value=1.6e-10  Score=77.58  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=50.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.+||.+++||+|+|+.+++|+.|+           ..+|+++++.|+
T Consensus        65 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l~~~~~~fD~V~~~~~l~~~~d~-----------~~~l~~~~r~Lk  131 (260)
T 1vl5_A           65 FDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDERFHIVTCRIAAHHFPNP-----------ASFVSEAYRVLK  131 (260)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhCCCCCCCEEEEEEhhhhHhcCCH-----------HHHHHHHHHHcC
Confidence            599999999998773     3468899997 6799999999999999999999653           357777777765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.00  E-value=1.2e-10  Score=80.42  Aligned_cols=60  Identities=13%  Similarity=0.170  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++ ++..++++|+ +.+|+.+++||+|+++.++||++.            .+++++++++|+
T Consensus        67 vD~s~~ml~~a~~~-~~v~~~~~~~-e~~~~~~~sfD~v~~~~~~h~~~~------------~~~~~e~~rvLk  126 (257)
T 4hg2_A           67 VDPGEAQIRQALRH-PRVTYAVAPA-EDTGLPPASVDVAIAAQAMHWFDL------------DRFWAELRRVAR  126 (257)
T ss_dssp             EESCHHHHHTCCCC-TTEEEEECCT-TCCCCCSSCEEEEEECSCCTTCCH------------HHHHHHHHHHEE
T ss_pred             EeCcHHhhhhhhhc-CCceeehhhh-hhhcccCCcccEEEEeeehhHhhH------------HHHHHHHHHHcC
Confidence            59999999998765 4678999997 789999999999999999999832            247888888775

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.98  E-value=2.7e-10  Score=75.04  Aligned_cols=64  Identities=13%  Similarity=-0.011  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHHhcC-----------------CCCcEEEccCCCCCCCCC-CceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----------------VEGDLVLSDLGQGVPFRA-GAFDGAISISALQWLCNADKTSHNPAKRL   62 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----------------~~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~w~~d~~~~~~~p~~~l   62 (77)
                      +|+|++|++.|+++.                 .+.+++++|+ ..+|+.+ ++||+|++..+++|+.         ....
T Consensus        50 vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~~fD~v~~~~~l~~l~---------~~~~  119 (203)
T 1pjz_A           50 AELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDIGHCAAFYDRAAMIALP---------ADMR  119 (203)
T ss_dssp             EEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-SSSTHHHHHSEEEEEEESCGGGSC---------HHHH
T ss_pred             EeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc-ccCCcccCCCEEEEEECcchhhCC---------HHHH
Confidence            599999999998872                 3568999998 5798876 8999999999998773         3455


Q ss_pred             HHHHHHHHHHHh
Q psy4109          63 YKFFSSLFACLW   74 (77)
Q Consensus        63 ~~~~~~l~~~L~   74 (77)
                      .++++++++.|+
T Consensus       120 ~~~l~~~~r~Lk  131 (203)
T 1pjz_A          120 ERYVQHLEALMP  131 (203)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcC
Confidence            678999999886

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.92  E-value=1.4e-09  Score=70.64  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++....+++++|+ ..+|+.+++||+|+++.+++|+.++           .++++++++.|+
T Consensus        62 vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  123 (211)
T 2gs9_A           62 VEPSEAMLAVGRRRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFVEDV-----------ERVLLEARRVLR  123 (211)
T ss_dssp             ECCCHHHHHHHHHHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTCSCH-----------HHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhcCCH-----------HHHHHHHHHHcC
Confidence            5999999999999876678999997 5799999999999999999998542           356777777664

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.92  E-value=1.5e-09  Score=72.88  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++....+++++|+ ..+|+ +++||+|+++. +++|+.+        ++.+..+++++++.|+
T Consensus        78 vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~-~~~fD~v~~~~~~l~~~~~--------~~~~~~~l~~~~~~L~  142 (263)
T 3pfg_A           78 LELSADMLAIARRRNPDAVLHHGDM-RDFSL-GRRFSAVTCMFSSIGHLAG--------QAELDAALERFAAHVL  142 (263)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCT-TTCCC-SCCEEEEEECTTGGGGSCH--------HHHHHHHHHHHHHTEE
T ss_pred             EECCHHHHHHHHhhCCCCEEEECCh-HHCCc-cCCcCEEEEcCchhhhcCC--------HHHHHHHHHHHHHhcC
Confidence            5999999999999987789999998 56888 89999999998 9999844        3567788999988875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=1.7e-09  Score=73.43  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..+..++++|+ +.+|+ +++||+|+++.+++|+.|+           ..+++++++.|+
T Consensus        85 vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~-~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~~~Lk  145 (279)
T 3ccf_A           85 TDNAATMIEKARQNYPHLHFDVADA-RNFRV-DKPLDAVFSNAMLHWVKEP-----------EAAIASIHQALK  145 (279)
T ss_dssp             EESCHHHHHHHHHHCTTSCEEECCT-TTCCC-SSCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHhhCCCCEEEECCh-hhCCc-CCCcCEEEEcchhhhCcCH-----------HHHHHHHHHhcC
Confidence            5999999999999877789999997 57887 6899999999999999653           356777777765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.90  E-value=1.8e-09  Score=71.73  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    .+.+++++|+ +.+|+.+++||.|+++.++||+.|+           ..+++++++.|+
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  132 (263)
T 2yqz_A           67 LDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLWHLVPDW-----------PKVLAEAIRVLK  132 (263)
T ss_dssp             EESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCGGGCTTH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCchhhcCCH-----------HHHHHHHHHHCC
Confidence            599999999999883    4568999997 6799999999999999999999543           457777777765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.89  E-value=5.1e-10  Score=72.36  Aligned_cols=64  Identities=9%  Similarity=0.074  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..+.+++++|+ ..+|+.+++||+|+++.+++|+..         +.+..+++++++.|+
T Consensus        69 vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~  132 (203)
T 3h2b_A           69 LEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMGP---------GELPDALVALRMAVE  132 (203)
T ss_dssp             ECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCCT---------TTHHHHHHHHHHTEE
T ss_pred             EeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCCH---------HHHHHHHHHHHHHcC
Confidence            5999999999999987889999998 579999999999999999998742         234567777777765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.88  E-value=1.5e-09  Score=72.19  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..+.+++++|+ +.+| .+++||.|+++.+++|+.|+           ..+++++++.|+
T Consensus        63 ~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  123 (259)
T 2p35_A           63 IDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQWVPDH-----------LAVLSQLMDQLE  123 (259)
T ss_dssp             EESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGGSTTH-----------HHHHHHHGGGEE
T ss_pred             EECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhhCCCH-----------HHHHHHHHHhcC
Confidence            5999999999999877789999997 5688 78999999999999999543           346666666554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.88  E-value=2.7e-09  Score=73.53  Aligned_cols=62  Identities=11%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|+++.      .+.+++++|+ ..+|+.  .||+|++++++||+.+         .....+|++++++|+
T Consensus       102 vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~-~~~~~~--~~d~v~~~~~l~~~~~---------~~~~~~l~~i~~~Lk  169 (261)
T 4gek_A          102 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-RDIAIE--NASMVVLNFTLQFLEP---------SERQALLDKIYQGLN  169 (261)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSCEEEEESCT-TTCCCC--SEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHhhccCceEEEeeccc-cccccc--ccccceeeeeeeecCc---------hhHhHHHHHHHHHcC
Confidence            599999999999873      1357899998 568874  5999999999998843         334568999999886

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=9.6e-10  Score=74.32  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++. +.+++++|+ +.+|+.+++||.|+++.+++|+.|+           .++++++++.|+
T Consensus        62 vD~s~~~~~~a~~~~-~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~Lk  122 (261)
T 3ege_A           62 VEPSIVMRQQAVVHP-QVEWFTGYA-ENLALPDKSVDGVISILAIHHFSHL-----------EKSFQEMQRIIR  122 (261)
T ss_dssp             ECSCHHHHHSSCCCT-TEEEECCCT-TSCCSCTTCBSEEEEESCGGGCSSH-----------HHHHHHHHHHBC
T ss_pred             EeCCHHHHHHHHhcc-CCEEEECch-hhCCCCCCCEeEEEEcchHhhccCH-----------HHHHHHHHHHhC
Confidence            599999999998876 678999998 6799999999999999999998553           467777777765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.86  E-value=4.5e-09  Score=69.82  Aligned_cols=64  Identities=20%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.   ...+++++|+ ..+|+.+++||+|+++.+++|+         +......+++++++.|+
T Consensus        84 vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~---------~~~~~~~~l~~~~~~L~  150 (266)
T 3ujc_A           84 IDICSNIVNMANERVSGNNKIIFEANDI-LTKEFPENNFDLIYSRDAILAL---------SLENKNKLFQKCYKWLK  150 (266)
T ss_dssp             EESCHHHHHHHHHTCCSCTTEEEEECCT-TTCCCCTTCEEEEEEESCGGGS---------CHHHHHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHhhcCCCeEEEECcc-ccCCCCCCcEEEEeHHHHHHhc---------ChHHHHHHHHHHHHHcC
Confidence            599999999999887   3568899997 5789999999999999999987         23556788888888875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.85  E-value=3.5e-09  Score=68.23  Aligned_cols=62  Identities=13%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      ...+++++|+ ..+|+.+++||+|+++.+++|+.++           ..+++++++.|+
T Consensus        72 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  139 (219)
T 3dlc_A           72 LDFSKHMNEIALKNIADANLNDRIQIVQGDV-HNIPIEDNYADLIVSRGSVFFWEDV-----------ATAFREIYRILK  139 (219)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECBT-TBCSSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHhccccCceEEEEcCH-HHCCCCcccccEEEECchHhhccCH-----------HHHHHHHHHhCC
Confidence            599999999999883      2468899998 5799999999999999999998543           457777777664

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.82  E-value=3.7e-09  Score=70.50  Aligned_cols=62  Identities=15%  Similarity=0.108  Sum_probs=50.7

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.+|+.+++||+|++..+++|+.|+           ..+++++++.|+
T Consensus        49 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~Lk  115 (239)
T 1xxl_A           49 VDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRYAAHHFSDV-----------RKAVREVARVLK  115 (239)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECCchhhccCH-----------HHHHHHHHHHcC
Confidence            599999999998763     3468899997 6799999999999999999998543           456777777665

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.81  E-value=3.8e-09  Score=70.43  Aligned_cols=62  Identities=10%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..  ..+++++|+ ..+|+.+++||+|+++.+++|+.++           .++++++++.|+
T Consensus        73 vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~Lk  136 (253)
T 3g5l_A           73 IDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSLALHYIASF-----------DDICKKVYINLK  136 (253)
T ss_dssp             EESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEchhhhhhhhH-----------HHHHHHHHHHcC
Confidence            5999999999998863  468999998 5799999999999999999998543           567788887775

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.81  E-value=4.4e-09  Score=71.72  Aligned_cols=62  Identities=11%  Similarity=0.073  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      ...+++++|+ ..+|+.+++||+|+++.+++|+.+           ..++|+++++.|+
T Consensus       111 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~Lk  178 (297)
T 2o57_A          111 LNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIPCEDNSYDFIWSQDAFLHSPD-----------KLKVFQECARVLK  178 (297)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCSSCTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCcceEEEEcCc-ccCCCCCCCEeEEEecchhhhcCC-----------HHHHHHHHHHHcC
Confidence            599999999998764      2468899998 579999999999999999999854           2567788887775

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.79  E-value=7.2e-09  Score=67.47  Aligned_cols=64  Identities=14%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..   ..+++++|+ ..+| .+++||+|+++.+++|+.++        +.++++++++++.|+
T Consensus        79 vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~~--------~~~~~~l~~~~~~L~  145 (216)
T 3ofk_A           79 IDVMPRAIGRACQRTKRWSHISWAATDI-LQFS-TAELFDLIVVAEVLYYLEDM--------TQMRTAIDNMVKMLA  145 (216)
T ss_dssp             EESCHHHHHHHHHHTTTCSSEEEEECCT-TTCC-CSCCEEEEEEESCGGGSSSH--------HHHHHHHHHHHHTEE
T ss_pred             EECCHHHHHHHHHhcccCCCeEEEEcch-hhCC-CCCCccEEEEccHHHhCCCH--------HHHHHHHHHHHHHcC
Confidence            5999999999998863   358999998 5677 68999999999999998653        456778888888775

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.79  E-value=1.4e-08  Score=65.54  Aligned_cols=64  Identities=9%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ...+++++|+ ..+|+.+++||+|+++.+++|+         +.+....+++++++.|+
T Consensus        52 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~---------~~~~~~~~l~~~~~~Lk  119 (209)
T 2p8j_A           52 IEISDLQLKKAENFSRENNFKLNISKGDI-RKLPFKDESMSFVYSYGTIFHM---------RKNDVKEAIDEIKRVLK  119 (209)
T ss_dssp             EECCHHHHHHHHHHHHHHTCCCCEEECCT-TSCCSCTTCEEEEEECSCGGGS---------CHHHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEECch-hhCCCCCCceeEEEEcChHHhC---------CHHHHHHHHHHHHHHcC
Confidence            599999999998763    4578999998 5799999999999999999876         24556788889888875

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.79  E-value=5.8e-09  Score=68.70  Aligned_cols=62  Identities=16%  Similarity=0.393  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHhcC--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.  .+.+++++|+ ..+|+.+++||+|+++.+++|+.++           ..+++++++.|+
T Consensus        81 vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  144 (242)
T 3l8d_A           81 VDISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLEWTEEP-----------LRALNEIKRVLK  144 (242)
T ss_dssp             EESCHHHHHHHHTTTCBTTEEEEECBT-TBCSSCTTCEEEEEEESCTTSSSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHhhcccCCceEEEcch-hcCCCCCCCccEEEEcChHhhccCH-----------HHHHHHHHHHhC
Confidence            599999999999884  3568999997 5799999999999999999998543           357777777765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.78  E-value=5.1e-09  Score=68.21  Aligned_cols=64  Identities=13%  Similarity=0.093  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHhcCC-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREV-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++.. +.+++++|+ ..+|+. ++||+|+++.+++|+.++         ....+++++++.|+.
T Consensus        73 vD~s~~~~~~a~~~~~~~~~~~~~d~-~~~~~~-~~fD~v~~~~~l~~~~~~---------~~~~~l~~~~~~Lkp  137 (220)
T 3hnr_A           73 IEPSREMRMIAKEKLPKEFSITEGDF-LSFEVP-TSIDTIVSTYAFHHLTDD---------EKNVAIAKYSQLLNK  137 (220)
T ss_dssp             ECSCHHHHHHHHHHSCTTCCEESCCS-SSCCCC-SCCSEEEEESCGGGSCHH---------HHHHHHHHHHHHSCT
T ss_pred             EeCCHHHHHHHHHhCCCceEEEeCCh-hhcCCC-CCeEEEEECcchhcCChH---------HHHHHHHHHHHhcCC
Confidence            5999999999999876 678999998 578887 999999999999998553         224578888887753

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.78  E-value=6.1e-09  Score=71.45  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHhc-------CCCCcEEEccCCCCCCCCC------CceeeeeeccchhhhcccCCCCCChHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDR-------EVEGDLVLSDLGQGVPFRA------GAFDGAISISALQWLCNADKTSHNPAKRLYKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r-------~~~~~~~~~D~~~~lPf~~------~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~   67 (77)
                      +|+|+.|++.|+++       ..+.+++++|+ +.+|+.+      ++||+|+++.++||+ ++           .++++
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~-----------~~~l~  133 (299)
T 3g5t_A           67 SDLSATMIKTAEVIKEGSPDTYKNVSFKISSS-DDFKFLGADSVDKQKIDMITAVECAHWF-DF-----------EKFQR  133 (299)
T ss_dssp             EESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-TCCGGGCTTTTTSSCEEEEEEESCGGGS-CH-----------HHHHH
T ss_pred             EeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-HhCCccccccccCCCeeEEeHhhHHHHh-CH-----------HHHHH
Confidence            59999999999987       34568999998 6788888      899999999999998 43           46888


Q ss_pred             HHHHHHh
Q psy4109          68 SLFACLW   74 (77)
Q Consensus        68 ~l~~~L~   74 (77)
                      ++++.|+
T Consensus       134 ~~~~~Lk  140 (299)
T 3g5t_A          134 SAYANLR  140 (299)
T ss_dssp             HHHHHEE
T ss_pred             HHHHhcC
Confidence            8888775

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.77  E-value=7.5e-09  Score=74.08  Aligned_cols=62  Identities=15%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHhc---------C----CCCcEEEccCCCCC------CCCCCceeeeeeccchhhhcccCCCCCChHHH
Q psy4109           1 MKKNAFYTNVARDR---------E----VEGDLVLSDLGQGV------PFRAGAFDGAISISALQWLCNADKTSHNPAKR   61 (77)
Q Consensus         1 iDiS~~ML~~A~~r---------~----~~~~~~~~D~~~~l------Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~   61 (77)
                      +|+|++|++.|+++         +    .+.+++++|+ +.+      |+.+++||+|+|+.+++|+.|+          
T Consensus       114 vD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~-~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~----------  182 (383)
T 4fsd_A          114 VDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI-ENLATAEPEGVPDSSVDIVISNCVCNLSTNK----------  182 (383)
T ss_dssp             EECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT-TCGGGCBSCCCCTTCEEEEEEESCGGGCSCH----------
T ss_pred             EECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH-HHhhhcccCCCCCCCEEEEEEccchhcCCCH----------
Confidence            59999999999987         3    4578999998 566      9999999999999999998553          


Q ss_pred             HHHHHHHHHHHHh
Q psy4109          62 LYKFFSSLFACLW   74 (77)
Q Consensus        62 l~~~~~~l~~~L~   74 (77)
                       ..+++++++.|+
T Consensus       183 -~~~l~~~~r~Lk  194 (383)
T 4fsd_A          183 -LALFKEIHRVLR  194 (383)
T ss_dssp             -HHHHHHHHHHEE
T ss_pred             -HHHHHHHHHHcC
Confidence             467788888775

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.75  E-value=1.4e-08  Score=66.62  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++....+++++|+ ..+|+ +++||+|+|+. +++|+.++        +.+..+++++++.|+
T Consensus        68 ~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~~-~~~~D~v~~~~~~~~~~~~~--------~~~~~~l~~~~~~L~  132 (239)
T 3bxo_A           68 LELSEDMLTHARKRLPDATLHQGDM-RDFRL-GRKFSAVVSMFSSVGYLKTT--------EELGAAVASFAEHLE  132 (239)
T ss_dssp             EESCHHHHHHHHHHCTTCEEEECCT-TTCCC-SSCEEEEEECTTGGGGCCSH--------HHHHHHHHHHHHTEE
T ss_pred             EeCCHHHHHHHHHhCCCCEEEECCH-HHccc-CCCCcEEEEcCchHhhcCCH--------HHHHHHHHHHHHhcC
Confidence            5999999999999987789999998 56887 88999999654 99988442        456778888888775

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.75  E-value=3.5e-09  Score=72.66  Aligned_cols=64  Identities=13%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHhcC----------------------CCCcEEEccCCCCCCCCC-CceeeeeeccchhhhcccCCCCCC
Q psy4109           1 MKKNAFYTNVARDRE----------------------VEGDLVLSDLGQGVPFRA-GAFDGAISISALQWLCNADKTSHN   57 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------------------~~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~w~~d~~~~~~~   57 (77)
                      +|+|+.|++.|+++.                      ...+++++|+ ..+|+.+ ++||+|++..+++++..       
T Consensus        96 vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~-~~l~~~~~~~FD~V~~~~~l~~l~~-------  167 (252)
T 2gb4_A           96 VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI-FDLPRANIGKFDRIWDRGALVAINP-------  167 (252)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT-TTGGGGCCCCEEEEEESSSTTTSCG-------
T ss_pred             EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc-ccCCcccCCCEEEEEEhhhhhhCCH-------
Confidence            699999999997653                      2458999998 5788875 89999999999988742       


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy4109          58 PAKRLYKFFSSLFACLW   74 (77)
Q Consensus        58 p~~~l~~~~~~l~~~L~   74 (77)
                        ....++++++++.|+
T Consensus       168 --~~~~~~l~~~~~~Lk  182 (252)
T 2gb4_A          168 --GDHDRYADIILSLLR  182 (252)
T ss_dssp             --GGHHHHHHHHHHTEE
T ss_pred             --HHHHHHHHHHHHHcC
Confidence              234568888888775

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.73  E-value=1.1e-08  Score=67.87  Aligned_cols=64  Identities=14%  Similarity=0.221  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..   ..+++++|+ ..+|+.+++||+|++..+++|+.         .+.+..+++++++.|+
T Consensus       122 vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~---------~~~~~~~l~~~~~~Lk  188 (254)
T 1xtp_A          122 LEPVKHMLEEAKRELAGMPVGKFILASM-ETATLPPNTYDLIVIQWTAIYLT---------DADFVKFFKHCQQALT  188 (254)
T ss_dssp             EESCHHHHHHHHHHTTTSSEEEEEESCG-GGCCCCSSCEEEEEEESCGGGSC---------HHHHHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHhccCCceEEEEccH-HHCCCCCCCeEEEEEcchhhhCC---------HHHHHHHHHHHHHhcC
Confidence            5899999999998863   468899997 56899999999999999998873         2456788888888875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.72  E-value=2.1e-09  Score=73.83  Aligned_cols=62  Identities=8%  Similarity=-0.084  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHhcCC------CC--cEEEccCCCCCC------CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EG--DLVLSDLGQGVP------FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFF   66 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~--~~~~~D~~~~lP------f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~   66 (77)
                      +|+|++|++.|+++..      +.  .+..+|+ +.++      |.+++||+|+++.++||++|+           ..++
T Consensus        88 vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~-----------~~~l  155 (292)
T 2aot_A           88 VEPSAEQIAKYKELVAKTSNLENVKFAWHKETS-SEYQSRMLEKKELQKWDFIHMIQMLYYVKDI-----------PATL  155 (292)
T ss_dssp             ECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCH-HHHHHHHHTTTCCCCEEEEEEESCGGGCSCH-----------HHHH
T ss_pred             EeCCHHHHHHHHHHHHhccCCCcceEEEEecch-hhhhhhhccccCCCceeEEEEeeeeeecCCH-----------HHHH
Confidence            5999999999988731      11  3344554 3343      678999999999999999764           3467


Q ss_pred             HHHHHHHh
Q psy4109          67 SSLFACLW   74 (77)
Q Consensus        67 ~~l~~~L~   74 (77)
                      +++++.|+
T Consensus       156 ~~~~r~Lk  163 (292)
T 2aot_A          156 KFFHSLLG  163 (292)
T ss_dssp             HHHHHTEE
T ss_pred             HHHHHHcC
Confidence            77777664

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.72  E-value=1.2e-08  Score=66.32  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+ ..+|+.+++||+|+++.+++|+.++           ..+++++++.|+
T Consensus        68 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~Lk  134 (219)
T 3dh0_A           68 IDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIPLPDNTVDFIFMAFTFHELSEP-----------LKFLEELKRVAK  134 (219)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCSSCSSCEEEEEEESCGGGCSSH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCCCCCCCeeEEEeehhhhhcCCH-----------HHHHHHHHHHhC
Confidence            599999999998874     2468899997 6789999999999999999998543           467777777775

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.72  E-value=6.7e-09  Score=67.94  Aligned_cols=61  Identities=10%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             CCCCHHHHHHHHhcCC-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH-HHHh
Q psy4109           1 MKKNAFYTNVARDREV-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF-ACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~-~~L~   74 (77)
                      +|+|++|++.|+++.. ..+++++|+ +.+ +.+++||+|+++.+++|+.|+           ..++++++ +.|+
T Consensus        70 vD~s~~~~~~a~~~~~~~v~~~~~d~-~~~-~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~~Lk  132 (250)
T 2p7i_A           70 VEASEEAISHAQGRLKDGITYIHSRF-EDA-QLPRRYDNIVLTHVLEHIDDP-----------VALLKRINDDWLA  132 (250)
T ss_dssp             EESCHHHHHHHHHHSCSCEEEEESCG-GGC-CCSSCEEEEEEESCGGGCSSH-----------HHHHHHHHHTTEE
T ss_pred             EeCCHHHHHHHHHhhhCCeEEEEccH-HHc-CcCCcccEEEEhhHHHhhcCH-----------HHHHHHHHHHhcC
Confidence            5999999999999875 578899998 445 478999999999999999553           35666676 6554

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.70  E-value=9.5e-09  Score=67.16  Aligned_cols=64  Identities=25%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             CCCCHHHHHHHHhcCC----------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV----------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|++|++.|+++..          ..+++++|+ ..+|+.+++||+|+++.+++|+.+         ..+.+++++++
T Consensus        59 vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~~---------~~~~~~l~~~~  128 (219)
T 3jwg_A           59 VDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAATVIEVIEHLDE---------NRLQAFEKVLF  128 (219)
T ss_dssp             EESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEEEEESCGGGCCH---------HHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEEEEHHHHHhCCH---------HHHHHHHHHHH
Confidence            5999999999998742          468999998 678888999999999999998843         34667888888


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       129 ~~Lk  132 (219)
T 3jwg_A          129 EFTR  132 (219)
T ss_dssp             TTTC
T ss_pred             HhhC
Confidence            7775

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.70  E-value=8.3e-09  Score=68.59  Aligned_cols=61  Identities=16%  Similarity=0.067  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      .+.+++++|+ ..+|+ +++||+|+|..+++|+.++           ..+++++++.|+
T Consensus        65 vD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~V~~~~~~~~~~~~-----------~~~l~~~~r~Lk  131 (256)
T 1nkv_A           65 IDMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGYVA-NEKCDVAACVGATWIAGGF-----------AGAEELLAQSLK  131 (256)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCC-TTCCC-SSCEEEEEEESCGGGTSSS-----------HHHHHHHTTSEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCcceEEEECCh-HhCCc-CCCCCEEEECCChHhcCCH-----------HHHHHHHHHHcC
Confidence            599999999998764      2468899998 56888 8999999999999998643           446666666554

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.70  E-value=1.6e-08  Score=63.65  Aligned_cols=59  Identities=7%  Similarity=-0.042  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++....+++++|    +|+.+++||.|+++.+++|+.++           ..+++++++.|+
T Consensus        45 vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  103 (170)
T 3i9f_A           45 IDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFILFANSFHDMDDK-----------QHVISEVKRILK  103 (170)
T ss_dssp             ECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEEEESCSTTCSCH-----------HHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEEEccchhcccCH-----------HHHHHHHHHhcC
Confidence            599999999999987678888888    68889999999999999998542           467777777765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.70  E-value=2.7e-08  Score=64.74  Aligned_cols=65  Identities=15%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             CCCCHHHHHHHHhcCC----------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV----------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|+.|++.|+++..          ..+++++|+ ..+|+.+++||+|+++.+++|+.++        +....++++++
T Consensus        58 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~l~~~~~~--------~~~~~~l~~~~  128 (235)
T 3sm3_A           58 IDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSFHDSSFDFAVMQAFLTSVPDP--------KERSRIIKEVF  128 (235)
T ss_dssp             EESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCSCTTCEEEEEEESCGGGCCCH--------HHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCCCCCceeEEEEcchhhcCCCH--------HHHHHHHHHHH
Confidence            5999999999998652          247899997 5799999999999999999998653        34557888888


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       129 ~~L~  132 (235)
T 3sm3_A          129 RVLK  132 (235)
T ss_dssp             HHEE
T ss_pred             HHcC
Confidence            8775

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.70  E-value=2.8e-08  Score=64.20  Aligned_cols=63  Identities=14%  Similarity=0.089  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHhcC-CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|++++ .+.+++++|+ ..+ +.+++||+|+++.+++|+.+         ..+..+++++++.|+
T Consensus        74 ~D~s~~~~~~a~~~~~~~~~~~~~d~-~~~-~~~~~~D~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~  137 (218)
T 3ou2_A           74 LDGSAEMIAEAGRHGLDNVEFRQQDL-FDW-TPDRQWDAVFFAHWLAHVPD---------DRFEAFWESVRSAVA  137 (218)
T ss_dssp             EESCHHHHHHHGGGCCTTEEEEECCT-TSC-CCSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHhcCCCCeEEEeccc-ccC-CCCCceeEEEEechhhcCCH---------HHHHHHHHHHHHHcC
Confidence            599999999999876 5578999998 455 78999999999999998743         456778888888875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.69  E-value=1.2e-08  Score=68.53  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    .  ..+++++|+ ..+|+.+++||+|+|+.+++|+.++           ..+|+++++.|+
T Consensus        90 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  157 (273)
T 3bus_A           90 ISISRPQVNQANARATAAGLANRVTFSYADA-MDLPFEDASFDAVWALESLHHMPDR-----------GRALREMARVLR  157 (273)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCSCTTCEEEEEEESCTTTSSCH-----------HHHHHHHHTTEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCcceEEEECcc-ccCCCCCCCccEEEEechhhhCCCH-----------HHHHHHHHHHcC
Confidence            589999999998773    1  368899997 5799999999999999999998553           456777776654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.69  E-value=2.5e-08  Score=65.47  Aligned_cols=60  Identities=13%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++  ..+++++|+ ..+|+.+++||+|+++.+++|+.++           ..+++++++.|+
T Consensus        71 vD~s~~~~~~a~~~--~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  130 (219)
T 1vlm_A           71 VEPSERMAEIARKR--GVFVLKGTA-ENLPLKDESFDFALMVTTICFVDDP-----------ERALKEAYRILK  130 (219)
T ss_dssp             EESCHHHHHHHHHT--TCEEEECBT-TBCCSCTTCEEEEEEESCGGGSSCH-----------HHHHHHHHHHEE
T ss_pred             cCCCHHHHHHHHhc--CCEEEEccc-ccCCCCCCCeeEEEEcchHhhccCH-----------HHHHHHHHHHcC
Confidence            58999999999998  478899997 5789999999999999999998543           357777777664

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.69  E-value=6.7e-09  Score=68.35  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..   ..+++++|+ ..+|+. ++||+|+++.+++|+.++         ....+++++++.|+
T Consensus        74 vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~~~-~~fD~v~~~~~l~~~~~~---------~~~~~l~~~~~~Lk  139 (234)
T 3dtn_A           74 VDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYDFE-EKYDMVVSALSIHHLEDE---------DKKELYKRSYSILK  139 (234)
T ss_dssp             EESCHHHHHHHHHHTCSCTTEEEEESCT-TTCCCC-SCEEEEEEESCGGGSCHH---------HHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHhhccCCCEEEEeCch-hccCCC-CCceEEEEeCccccCCHH---------HHHHHHHHHHHhcC
Confidence            5999999999998864   468899998 578877 899999999999988543         34568888888875

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.66  E-value=1.5e-08  Score=66.26  Aligned_cols=64  Identities=22%  Similarity=0.160  Sum_probs=52.4

Q ss_pred             CCCCHHHHHHHHhcCC----------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV----------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|++|++.|+++..          ..+++++|+ ..+++.+++||+|+++.+++|+.+         ..+.+++++++
T Consensus        59 vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~  128 (217)
T 3jwh_A           59 VDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAATVIEVIEHLDL---------SRLGAFERVLF  128 (217)
T ss_dssp             EESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEEEEESCGGGCCH---------HHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEEeeHHHHHcCCH---------HHHHHHHHHHH
Confidence            5999999999998742          468999997 567888899999999999998843         35667888888


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       129 ~~Lk  132 (217)
T 3jwh_A          129 EFAQ  132 (217)
T ss_dssp             TTTC
T ss_pred             HHcC
Confidence            7775

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.66  E-value=9.3e-09  Score=69.84  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.      ...+++++|+ ..+| +.+++||+|+++.+++|+.++           ..+++++++.|
T Consensus        96 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L  163 (285)
T 4htf_A           96 CDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA-QDVASHLETPVDLILFHAVLEWVADP-----------RSVLQTLWSVL  163 (285)
T ss_dssp             EESCHHHHHHHHHHHHC-CCGGGEEEEESCG-GGTGGGCSSCEEEEEEESCGGGCSCH-----------HHHHHHHHHTE
T ss_pred             EECCHHHHHHHHHHHHhcCCCcceEEEEcCH-HHhhhhcCCCceEEEECchhhcccCH-----------HHHHHHHHHHc
Confidence            599999999999874      2357899998 4566 889999999999999999553           35777777766


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       164 k  164 (285)
T 4htf_A          164 R  164 (285)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.65  E-value=2.6e-08  Score=65.46  Aligned_cols=62  Identities=19%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..  ..+++++|+ ..+|+.+++||+|+++.+++|+.+           ...+++++++.|+
T Consensus        72 vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~L~  135 (243)
T 3bkw_A           72 LDLSEKMLARARAAGPDTGITYERADL-DKLHLPQDSFDLAYSSLALHYVED-----------VARLFRTVHQALS  135 (243)
T ss_dssp             EESCHHHHHHHHHTSCSSSEEEEECCG-GGCCCCTTCEEEEEEESCGGGCSC-----------HHHHHHHHHHHEE
T ss_pred             EcCCHHHHHHHHHhcccCCceEEEcCh-hhccCCCCCceEEEEeccccccch-----------HHHHHHHHHHhcC
Confidence            5999999999998864  357899998 568888999999999999999853           2467777777765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.65  E-value=2.4e-08  Score=68.17  Aligned_cols=67  Identities=12%  Similarity=0.023  Sum_probs=48.0

Q ss_pred             CCCCHHHHHHHHhcCCC-----------------------------------CcEEEccCCCCCCC-----CCCceeeee
Q psy4109           1 MKKNAFYTNVARDREVE-----------------------------------GDLVLSDLGQGVPF-----RAGAFDGAI   40 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~-----------------------------------~~~~~~D~~~~lPf-----~~~sFD~v~   40 (77)
                      +|+|++|++.|+++...                                   .+++++|+.+.+|+     .+++||+|+
T Consensus       100 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~  179 (289)
T 2g72_A          100 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV  179 (289)
T ss_dssp             ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred             eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEE
Confidence            69999999999874210                                   23566798544775     456799999


Q ss_pred             eccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          41 SISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        41 s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      |+.+++|+...       ...+..+|+++++.|+
T Consensus       180 ~~~~l~~~~~~-------~~~~~~~l~~~~r~Lk  206 (289)
T 2g72_A          180 SAFCLEAVSPD-------LASFQRALDHITTLLR  206 (289)
T ss_dssp             EESCHHHHCSS-------HHHHHHHHHHHHTTEE
T ss_pred             ehhhhhhhcCC-------HHHHHHHHHHHHHhcC
Confidence            99999996321       2455678888888775

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.65  E-value=1.7e-08  Score=67.97  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=49.2

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      ...+++++|+ ..+|+.+++||.|+|+.+++|+ ++           ..+++++++.|+
T Consensus        75 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~~~~~-~~-----------~~~l~~~~~~Lk  141 (267)
T 3kkz_A           75 LDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGAIYNI-GF-----------ERGLNEWRKYLK  141 (267)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSCGGGT-CH-----------HHHHHHHGGGEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCCceec-CH-----------HHHHHHHHHHcC
Confidence            599999999998874      2368999998 6799999999999999999988 32           346666666654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.64  E-value=2e-08  Score=67.63  Aligned_cols=62  Identities=18%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.     .+.+++++|+ ..+|+.+++||+|+++.+++|+.++           ..+++++++.|+
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  133 (276)
T 3mgg_A           67 IDISPESLEKARENTEKNGIKNVKFLQANI-FSLPFEDSSFDHIFVCFVLEHLQSP-----------EEALKSLKKVLK  133 (276)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCG-GGCCSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEccc-ccCCCCCCCeeEEEEechhhhcCCH-----------HHHHHHHHHHcC
Confidence            599999999998873     2468899997 5799999999999999999999654           357777777765

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.63  E-value=6.1e-08  Score=62.29  Aligned_cols=73  Identities=12%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCC----CCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKT----SHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~----~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|+.|++.|+++.   ...+++++|+ ..+|+.+++||+|+++.+++++......    .+........+++++++.|
T Consensus        71 ~D~s~~~~~~a~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  149 (215)
T 2pxx_A           71 VDYSSVVVAAMQACYAHVPQLRWETMDV-RKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVL  149 (215)
T ss_dssp             EESCHHHHHHHHHHTTTCTTCEEEECCT-TSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHE
T ss_pred             EeCCHHHHHHHHHhcccCCCcEEEEcch-hcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhC
Confidence            599999999999886   3468899997 5689999999999999999887522111    1123567788999998887


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       150 k  150 (215)
T 2pxx_A          150 V  150 (215)
T ss_dssp             E
T ss_pred             c
Confidence            6

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.63  E-value=3.2e-08  Score=65.70  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHhcCCC-----CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVE-----GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~-----~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++...     .+++++|+ ..+|+.+++||+|++..+++|+.+         ..+..+++++++.|+
T Consensus       108 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~Lk  176 (241)
T 2ex4_A          108 VDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVIGHLTD---------QHLAEFLRRCKGSLR  176 (241)
T ss_dssp             EESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcchhhhCCH---------HHHHHHHHHHHHhcC
Confidence            59999999999988632     47899997 578888889999999999988754         345778888888875

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.63  E-value=3.2e-08  Score=67.20  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHHhcC---C-C------------------------------C-cEEEccCCCCCCCC---CCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE---V-E------------------------------G-DLVLSDLGQGVPFR---AGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~-~------------------------------~-~~~~~D~~~~lPf~---~~sFD~v~s~   42 (77)
                      +|+|+.|++.|+++.   + .                              . +++++|+.+..|+.   +++||+|+|+
T Consensus        84 ~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~  163 (263)
T 2a14_A           84 SDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL  163 (263)
T ss_dssp             EESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE
T ss_pred             ccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeeh
Confidence            599999999998642   0 0                              1 28899986655654   6799999999


Q ss_pred             cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          43 SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        43 ~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .++||+.      +. ...+.+.++++++.|+
T Consensus       164 ~~l~~i~------~~-~~~~~~~l~~i~r~LK  188 (263)
T 2a14_A          164 LAMECAC------CS-LDAYRAALCNLASLLK  188 (263)
T ss_dssp             SCHHHHC------SS-HHHHHHHHHHHHTTEE
T ss_pred             HHHHHhc------CC-HHHHHHHHHHHHHHcC
Confidence            9999972      11 3456778899988875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.62  E-value=2.8e-08  Score=68.55  Aligned_cols=64  Identities=13%  Similarity=0.046  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHhcCCC------CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVE------GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~------~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++...      .+++++|+ ..+|+. ++||+|+++.+++|+.++        +...++++++++.|+
T Consensus       149 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~-~~fD~v~~~~~~~~~~~~--------~~~~~~l~~~~~~Lk  218 (305)
T 3ocj_A          149 IDYDPEALDGATRLAAGHALAGQITLHRQDA-WKLDTR-EGYDLLTSNGLNIYEPDD--------ARVTELYRRFWQALK  218 (305)
T ss_dssp             EESCHHHHHHHHHHHTTSTTGGGEEEEECCG-GGCCCC-SCEEEEECCSSGGGCCCH--------HHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECch-hcCCcc-CCeEEEEECChhhhcCCH--------HHHHHHHHHHHHhcC
Confidence            59999999999987531      57899998 568887 999999999999998654        445568888888876

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.62  E-value=7.4e-09  Score=68.77  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCC--CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+|++|++.|+++   .+++++|+. .+  |+.+++||.|+|+.+++|+.++         .+..+|+++++.|+.
T Consensus        69 vD~s~~~~~~a~~~---~~~~~~d~~-~~~~~~~~~~fD~i~~~~~l~~~~~~---------~~~~~l~~~~~~Lkp  132 (240)
T 3dli_A           69 VDINEDMIKFCEGK---FNVVKSDAI-EYLKSLPDKYLDGVMISHFVEHLDPE---------RLFELLSLCYSKMKY  132 (240)
T ss_dssp             ECSCHHHHHHHHTT---SEEECSCHH-HHHHTSCTTCBSEEEEESCGGGSCGG---------GHHHHHHHHHHHBCT
T ss_pred             EECCHHHHHHHHhh---cceeeccHH-HHhhhcCCCCeeEEEECCchhhCCcH---------HHHHHHHHHHHHcCC
Confidence            59999999999988   678888874 44  8899999999999999988532         456788888888863

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.61  E-value=4.1e-08  Score=63.79  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++. ...++++|+ ..+| .+++||+|+++.+++|+.         .+.+..+++++++.|+
T Consensus        71 vD~s~~~~~~a~~~~-~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~---------~~~~~~~l~~~~~~Lk  132 (211)
T 3e23_A           71 TDGSPELAAEASRRL-GRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVP---------RDELADVLKLIWRALK  132 (211)
T ss_dssp             EESCHHHHHHHHHHH-TSCCEECCG-GGCC-CCSCEEEEEECSCGGGSC---------HHHHHHHHHHHHHHEE
T ss_pred             ECCCHHHHHHHHHhc-CCceEEeee-ccCC-CCCcEEEEEecCchhhcC---------HHHHHHHHHHHHHhcC
Confidence            599999999999885 467889997 5688 899999999999998773         4566788999988876

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.60  E-value=1.3e-08  Score=67.68  Aligned_cols=61  Identities=11%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++..      ..+++++|+ ..+|+.+++||+|+++.+++|+ ++           ..+++++++.|+
T Consensus        75 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~-~~-----------~~~l~~~~~~L~  141 (257)
T 3f4k_A           75 IDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGAIYNI-GF-----------ERGMNEWSKYLK  141 (257)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEESCSCCC-CH-----------HHHHHHHHTTEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecChHhhc-CH-----------HHHHHHHHHHcC
Confidence            5999999999988742      267899998 6799999999999999999887 22           346677766654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.60  E-value=2.6e-08  Score=68.79  Aligned_cols=65  Identities=11%  Similarity=0.048  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHHhcCC------------CCcEEEccCCCCCC----CC--CCceeeeeeccchhhh-cccCCCCCChHHH
Q psy4109           1 MKKNAFYTNVARDREV------------EGDLVLSDLGQGVP----FR--AGAFDGAISISALQWL-CNADKTSHNPAKR   61 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------------~~~~~~~D~~~~lP----f~--~~sFD~v~s~~~l~w~-~d~~~~~~~p~~~   61 (77)
                      +|+|++|++.|+++..            ..+++++|+ +.+|    +.  +++||+|+|+.++||+ .+        .+.
T Consensus        63 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~--------~~~  133 (313)
T 3bgv_A           63 TDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS-SKELLIDKFRDPQMCFDICSCQFVCHYSFES--------YEQ  133 (313)
T ss_dssp             EESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT-TTSCSTTTCSSTTCCEEEEEEETCGGGGGGS--------HHH
T ss_pred             EeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc-cccchhhhcccCCCCEEEEEEecchhhccCC--------HHH
Confidence            5999999999988742            357899998 4565    64  5699999999999998 33        245


Q ss_pred             HHHHHHHHHHHHh
Q psy4109          62 LYKFFSSLFACLW   74 (77)
Q Consensus        62 l~~~~~~l~~~L~   74 (77)
                      +..+|++++++|+
T Consensus       134 ~~~~l~~~~~~Lk  146 (313)
T 3bgv_A          134 ADMMLRNACERLS  146 (313)
T ss_dssp             HHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHhC
Confidence            5678888887765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.60  E-value=2.9e-08  Score=67.39  Aligned_cols=69  Identities=7%  Similarity=0.040  Sum_probs=53.9

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCC---CCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVP---FRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lP---f~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~   67 (77)
                      +|+|++|++.|+++.         ....+..+|+ ..+|   +.+++||+|++. .+++|+.+....    .+.+..+++
T Consensus        85 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~----~~~~~~~l~  159 (293)
T 3thr_A           85 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANW-LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD----QSEHRLALK  159 (293)
T ss_dssp             EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG-GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSS----SHHHHHHHH
T ss_pred             EECCHHHHHHHHHhhhhcccccccceeeEeecCh-hhCccccccCCCeEEEEEcChHHhhcCccccC----HHHHHHHHH
Confidence            599999999998753         2356788897 5688   889999999998 799999763222    256677888


Q ss_pred             HHHHHHh
Q psy4109          68 SLFACLW   74 (77)
Q Consensus        68 ~l~~~L~   74 (77)
                      ++++.|+
T Consensus       160 ~~~~~Lk  166 (293)
T 3thr_A          160 NIASMVR  166 (293)
T ss_dssp             HHHHTEE
T ss_pred             HHHHHcC
Confidence            8888775

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.59  E-value=2.9e-08  Score=65.05  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..    ..+++++|+ ..+|+. ++||+|+++. +++|+.++        ..+..+++++++.|+
T Consensus        65 ~D~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~-~~fD~v~~~~~~l~~~~~~--------~~~~~~l~~~~~~L~  133 (246)
T 1y8c_A           65 VDLSQEMLSEAENKFRSQGLKPRLACQDI-SNLNIN-RKFDLITCCLDSTNYIIDS--------DDLKKYFKAVSNHLK  133 (246)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEECCCG-GGCCCS-CCEEEEEECTTGGGGCCSH--------HHHHHHHHHHHTTEE
T ss_pred             EECCHHHHHHHHHHHhhcCCCeEEEeccc-ccCCcc-CCceEEEEcCccccccCCH--------HHHHHHHHHHHHhcC
Confidence            5999999999998742    578899998 568876 8899999998 99998432        356678888887765

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.58  E-value=1.5e-07  Score=59.37  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..+.+++++|+ ..+|+.+++||+|+++ .+++|+.         ...+..+++++++.|+
T Consensus        74 ~D~~~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~~D~i~~~~~~~~~~~---------~~~~~~~l~~~~~~l~  138 (195)
T 3cgg_A           74 TDLDPILIDYAKQDFPEARWVVGDL-SVDQISETDFDLIVSAGNVMGFLA---------EDGREPALANIHRALG  138 (195)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCT-TTSCCCCCCEEEEEECCCCGGGSC---------HHHHHHHHHHHHHHEE
T ss_pred             EcCCHHHHHHHHHhCCCCcEEEccc-ccCCCCCCceeEEEECCcHHhhcC---------hHHHHHHHHHHHHHhC
Confidence            5899999999999987789999998 5688888999999998 5777652         3445778888888775

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.57  E-value=5.9e-08  Score=67.06  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      .+.+++++|+ ..+|+.+++||+|+++.+++|+ +           +..+|+++++.|+
T Consensus       146 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~-~-----------~~~~l~~~~~~Lk  212 (312)
T 3vc1_A          146 VTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDTPFDKGAVTASWNNESTMYV-D-----------LHDLFSEHSRFLK  212 (312)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEEESCGGGS-C-----------HHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcCCCCCCCEeEEEECCchhhC-C-----------HHHHHHHHHHHcC
Confidence            599999999998763      1368999998 5799999999999999999988 2           4567888887775

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.54  E-value=9.6e-08  Score=64.39  Aligned_cols=66  Identities=17%  Similarity=0.050  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCC-CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPF-RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf-~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++..      ...++++|+ ..+|+ .+++||+|+++.++||+.       .....+..+++++++.|
T Consensus        93 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~~l~~~~-------~~~~~~~~~l~~~~~~L  164 (298)
T 1ri5_A           93 VDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGRHMDLGKEFDVISSQFSFHYAF-------STSESLDIAQRNIARHL  164 (298)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTSCCCCSSCEEEEEEESCGGGGG-------SSHHHHHHHHHHHHHTE
T ss_pred             EECCHHHHHHHHHHHHhcCCCccEEEEECCc-cccccCCCCCcCEEEECchhhhhc-------CCHHHHHHHHHHHHHhc
Confidence            5999999999998742      247899997 56888 689999999999998851       22355677888888877


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       165 k  165 (298)
T 1ri5_A          165 R  165 (298)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.54  E-value=1.1e-07  Score=65.67  Aligned_cols=53  Identities=13%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             CCcEEEccCCCCC----CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          17 EGDLVLSDLGQGV----PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        17 ~~~~~~~D~~~~l----Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +.+++++|+....    ++.+++||+|+|..+++|+.-     ....+.++++|+++++.|+
T Consensus       155 ~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl-----~~~~~~~~~~l~~~~~~Lk  211 (292)
T 3g07_A          155 NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL-----NWGDEGLKRMFRRIYRHLR  211 (292)
T ss_dssp             TEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHH-----HHHHHHHHHHHHHHHHHEE
T ss_pred             cceEEecccccCccccccccCCCcCEEEEChHHHHhhh-----cCCHHHHHHHHHHHHHHhC
Confidence            3578889974321    367899999999999999820     0134577889999999886

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.53  E-value=3.3e-08  Score=68.32  Aligned_cols=64  Identities=8%  Similarity=0.063  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCC-----------CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVP-----------FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFF   66 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lP-----------f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~   66 (77)
                      +|+|++||+.|+++.   ...+++++|+.+ .+           +..++||+|+++.++||+.+.         ..+.+|
T Consensus       110 vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~-~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~---------~~~~~l  179 (274)
T 2qe6_A          110 VDIDPMVLTHGRALLAKDPNTAVFTADVRD-PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD---------VVDRVV  179 (274)
T ss_dssp             EESSHHHHHHHHHHHTTCTTEEEEECCTTC-HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT---------THHHHH
T ss_pred             EECChHHHHHHHHhcCCCCCeEEEEeeCCC-chhhhccchhhccCCCCCCEEEEEechhhhCCcH---------HHHHHH
Confidence            599999999999875   346899999843 21           233589999999999999653         235578


Q ss_pred             HHHHHHHh
Q psy4109          67 SSLFACLW   74 (77)
Q Consensus        67 ~~l~~~L~   74 (77)
                      ++++++|+
T Consensus       180 ~~~~~~L~  187 (274)
T 2qe6_A          180 GAYRDALA  187 (274)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhCC
Confidence            88888775

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.52  E-value=1.5e-07  Score=61.13  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ...+++++|+ ..+|+.+++||+|+++.++++..         .....++++++++.|+
T Consensus        66 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~---------~~~~~~~l~~~~~~L~  133 (227)
T 1ve3_A           66 VDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDSIVHFE---------PLELNQVFKEVRRVLK  133 (227)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEECCT-TSCCSCTTCEEEEEEESCGGGCC---------HHHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCceEEECch-hcCCCCCCcEEEEEEcCchHhCC---------HHHHHHHHHHHHHHcC
Confidence            599999999998774    4578999998 56888899999999999854431         1345678888888775

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.51  E-value=7.8e-08  Score=63.49  Aligned_cols=63  Identities=11%  Similarity=-0.046  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHhcCCC------CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVE------GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~------~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++...      .+++++|+. .+| .+++||+|+++.+++|+.         ++....+++++++.|+
T Consensus        94 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~---------~~~~~~~l~~~~~~Lk  162 (235)
T 3lcc_A           94 LDISESALAKANETYGSSPKAEYFSFVKEDVF-TWR-PTELFDLIFDYVFFCAIE---------PEMRPAWAKSMYELLK  162 (235)
T ss_dssp             ECSCHHHHHHHHHHHTTSGGGGGEEEECCCTT-TCC-CSSCEEEEEEESSTTTSC---------GGGHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHhhccCCCcceEEEECchh-cCC-CCCCeeEEEEChhhhcCC---------HHHHHHHHHHHHHHCC
Confidence            59999999999988632      579999984 566 466999999999998874         2345678888888775

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.51  E-value=6.2e-08  Score=67.91  Aligned_cols=66  Identities=14%  Similarity=0.057  Sum_probs=48.0

Q ss_pred             CCCCHHHHHHHHhcCCC-----------CcEEEccCCC-----CC--CCCCCceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109           1 MKKNAFYTNVARDREVE-----------GDLVLSDLGQ-----GV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRL   62 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~-----------~~~~~~D~~~-----~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l   62 (77)
                      +|+|++||+.|+++...           .++.++|+..     .+  ++.+++||+|+|..++||+.+..        .+
T Consensus        77 iD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~--------~~  148 (302)
T 2vdw_A           77 TDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR--------HY  148 (302)
T ss_dssp             EESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT--------TH
T ss_pred             EECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHH--------HH
Confidence            69999999999987421           2366777521     12  46688999999999999975431        12


Q ss_pred             HHHHHHHHHHHh
Q psy4109          63 YKFFSSLFACLW   74 (77)
Q Consensus        63 ~~~~~~l~~~L~   74 (77)
                      ..+++++++.|+
T Consensus       149 ~~~l~~~~r~Lk  160 (302)
T 2vdw_A          149 ATVMNNLSELTA  160 (302)
T ss_dssp             HHHHHHHHHHEE
T ss_pred             HHHHHHHHHHcC
Confidence            578999998886

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.51  E-value=1e-07  Score=63.28  Aligned_cols=67  Identities=13%  Similarity=0.014  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHhcCCC----------------------------------C-cEEEccCCCCCCCCC---Cceeeeeec
Q psy4109           1 MKKNAFYTNVARDREVE----------------------------------G-DLVLSDLGQGVPFRA---GAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~----------------------------------~-~~~~~D~~~~lPf~~---~sFD~v~s~   42 (77)
                      +|+|+.|++.|+++...                                  . .++++|+.+..|+.+   ++||+|+++
T Consensus        85 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~  164 (265)
T 2i62_A           85 SDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLST  164 (265)
T ss_dssp             EESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEh
Confidence            59999999999877422                                  4 789999865445566   899999999


Q ss_pred             cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          43 SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        43 ~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+++++..       ....+..+++++++.|+
T Consensus       165 ~~l~~~~~-------~~~~~~~~l~~~~~~Lk  189 (265)
T 2i62_A          165 LCLDAACP-------DLPAYRTALRNLGSLLK  189 (265)
T ss_dssp             SCHHHHCS-------SHHHHHHHHHHHHTTEE
T ss_pred             hhhhhhcC-------ChHHHHHHHHHHHhhCC
Confidence            99997632       13456778888887765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.48  E-value=7.4e-08  Score=65.80  Aligned_cols=61  Identities=11%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++..    +.+++++|+ ..+|+ +++||.|++..+++|+.|+           .++++++++.|+
T Consensus        53 vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~Lk  117 (284)
T 3gu3_A           53 IDSGETLLAEARELFRLLPYDSEFLEGDA-TEIEL-NDKYDIAICHAFLLHMTTP-----------ETMLQKMIHSVK  117 (284)
T ss_dssp             EESCHHHHHHHHHHHHSSSSEEEEEESCT-TTCCC-SSCEEEEEEESCGGGCSSH-----------HHHHHHHHHTEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEEcch-hhcCc-CCCeeEEEECChhhcCCCH-----------HHHHHHHHHHcC
Confidence            5999999999998742    468899998 56888 5799999999999998654           357777777664

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.47  E-value=1.6e-07  Score=65.68  Aligned_cols=64  Identities=11%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHhcC------------------------------------CCCcEEEccCCCCCCCC-CCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE------------------------------------VEGDLVLSDLGQGVPFR-AGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------------------------------------~~~~~~~~D~~~~lPf~-~~sFD~v~s~~   43 (77)
                      +|||++||+.|+++.                                    ..+.+.++|+. ..|+. ++.||+|+|..
T Consensus       143 tDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~-~~~~~~~~~fDlI~crn  221 (274)
T 1af7_A          143 SDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLL-EKQYNVPGPFDAIFCRN  221 (274)
T ss_dssp             EESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTT-CSSCCCCCCEEEEEECS
T ss_pred             EECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccC-CCCCCcCCCeeEEEECC
Confidence            599999999998752                                    02467889985 46665 68899999999


Q ss_pred             chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          44 ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        44 ~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +++|+++         +..++.+++++++|+
T Consensus       222 vliyf~~---------~~~~~vl~~~~~~L~  243 (274)
T 1af7_A          222 VMIYFDK---------TTQEDILRRFVPLLK  243 (274)
T ss_dssp             SGGGSCH---------HHHHHHHHHHGGGEE
T ss_pred             chHhCCH---------HHHHHHHHHHHHHhC
Confidence            9999843         345778888888775

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.46  E-value=3.7e-07  Score=61.37  Aligned_cols=61  Identities=25%  Similarity=0.372  Sum_probs=47.5

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhh-cccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWL-CNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~-~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.. ..++++|+ ..+|+.+++||+|+++.++.++ .+           ...+++++++.|+
T Consensus        82 vD~s~~~l~~a~~~~~-~~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~~~~-----------~~~~l~~~~~~Lk  143 (260)
T 2avn_A           82 VDPSKEMLEVAREKGV-KNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVEN-----------KDKAFSEIRRVLV  143 (260)
T ss_dssp             EESCHHHHHHHHHHTC-SCEEECCT-TSCCSCTTCEEEEEECSSHHHHCSC-----------HHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHhhcC-CCEEECcH-HHCCCCCCCEEEEEEcchhhhcccc-----------HHHHHHHHHHHcC
Confidence            5999999999998875 34899997 5799999999999998755444 32           3556777777765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.46  E-value=4e-08  Score=62.65  Aligned_cols=63  Identities=19%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.     .+.+++++|+ ..+|+ +++||+|+++.+++|+..         +.+..+++++++.|+
T Consensus        60 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~-~~~~D~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~  127 (199)
T 2xvm_A           60 WDKNAMSIANVERIKSIENLDNLHTRVVDL-NNLTF-DRQYDFILSTVVLMFLEA---------KTIPGLIANMQRCTK  127 (199)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTEEEEECCG-GGCCC-CCCEEEEEEESCGGGSCG---------GGHHHHHHHHHHTEE
T ss_pred             EECCHHHHHHHHHHHHhCCCCCcEEEEcch-hhCCC-CCCceEEEEcchhhhCCH---------HHHHHHHHHHHHhcC
Confidence            599999999998763     2468899997 56888 899999999999998742         234667888877765

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.46  E-value=4.4e-08  Score=65.12  Aligned_cols=66  Identities=17%  Similarity=0.042  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCC--CCCCCceeeeee-ccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGV--PFRAGAFDGAIS-ISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~l--Pf~~~sFD~v~s-~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.    .+.+++++|+ +.+  |+.+++||+|++ ..++ ...+.      .......+++++++.|
T Consensus        89 vD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~fD~V~~d~~~~-~~~~~------~~~~~~~~l~~~~r~L  160 (236)
T 1zx0_A           89 IECNDGVFQRLRDWAPRQTHKVIPLKGLW-EDVAPTLPDGHFDGILYDTYPL-SEETW------HTHQFNFIKNHAFRLL  160 (236)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCH-HHHGGGSCTTCEEEEEECCCCC-BGGGT------TTHHHHHHHHTHHHHE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCeEEEecCH-HHhhcccCCCceEEEEECCccc-chhhh------hhhhHHHHHHHHHHhc
Confidence            599999999999875    3457899997 567  899999999999 5554 33222      1344566788888887


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       161 k  161 (236)
T 1zx0_A          161 K  161 (236)
T ss_dssp             E
T ss_pred             C
Confidence            6

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.46  E-value=2.7e-07  Score=60.51  Aligned_cols=64  Identities=14%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ...+++++|+ ..+|+. ++||+|+++. +++|+.+        .+.+..+++++++.|+
T Consensus        60 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~-~~fD~v~~~~~~~~~~~~--------~~~~~~~l~~~~~~L~  128 (243)
T 3d2l_A           60 VDLSEEMLEIAQEKAMETNRHVDFWVQDM-RELELP-EPVDAITILCDSLNYLQT--------EADVKQTFDSAARLLT  128 (243)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEECCG-GGCCCS-SCEEEEEECTTGGGGCCS--------HHHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHhhhhcCCceEEEEcCh-hhcCCC-CCcCEEEEeCCchhhcCC--------HHHHHHHHHHHHHhcC
Confidence            599999999999874    3568899998 467775 8899999987 8988743        3566778888888775

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.45  E-value=6.4e-08  Score=66.40  Aligned_cols=69  Identities=9%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..      ..+++++|+ ..+   +++||+|+|+.+++|+.|+..  ..+.+.+..+|+++++.|+
T Consensus       101 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~---~~~fD~v~~~~~~~~~~d~~~--~~~~~~~~~~l~~~~~~Lk  174 (302)
T 3hem_A          101 LTLSENQYAHDKAMFDEVDSPRRKEVRIQGW-EEF---DEPVDRIVSLGAFEHFADGAG--DAGFERYDTFFKKFYNLTP  174 (302)
T ss_dssp             EECCHHHHHHHHHHHHHSCCSSCEEEEECCG-GGC---CCCCSEEEEESCGGGTTCCSS--CCCTTHHHHHHHHHHHSSC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECCH-HHc---CCCccEEEEcchHHhcCcccc--ccchhHHHHHHHHHHHhcC
Confidence            5999999999998742      357899997 434   899999999999999987641  1244677889999988876


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       175 p  175 (302)
T 3hem_A          175 D  175 (302)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.44  E-value=1.4e-07  Score=61.01  Aligned_cols=61  Identities=16%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCC-CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQ-GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~-~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.  .+++++|+.+ .+|+.+++||+|+++.+++|+.++           ..+++++++.|+
T Consensus        60 ~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~L~  121 (230)
T 3cc8_A           60 IEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP-----------WAVIEKVKPYIK  121 (230)
T ss_dssp             EESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH-----------HHHHHHTGGGEE
T ss_pred             EeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH-----------HHHHHHHHHHcC
Confidence            599999999999886  4788999743 378889999999999999998543           256666665553

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.43  E-value=1.7e-07  Score=64.13  Aligned_cols=63  Identities=14%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHhcCC--------CCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV--------EGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--------~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|++|++.|+++..        +.+++++|+ ..+|+ +++||+|+++ .+++|+         +++.+.++|+++++
T Consensus       110 vD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~v~~~~~~~~~~---------~~~~~~~~l~~~~~  178 (299)
T 3g2m_A          110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM-SAFAL-DKRFGTVVISSGSINEL---------DEADRRGLYASVRE  178 (299)
T ss_dssp             EESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT-TBCCC-SCCEEEEEECHHHHTTS---------CHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHhhcccccccceEEEeCch-hcCCc-CCCcCEEEECCcccccC---------CHHHHHHHHHHHHH
Confidence            5999999999998742        357999998 56887 8899998854 667665         24567889999998


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       179 ~L~  181 (299)
T 3g2m_A          179 HLE  181 (299)
T ss_dssp             HEE
T ss_pred             HcC
Confidence            886

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.42  E-value=5.7e-08  Score=65.95  Aligned_cols=63  Identities=11%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    ...+++++|+ ..+++ +++||+|+++.+++|+.+         ..+..+++++++.|+
T Consensus       148 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~-~~~fD~i~~~~~~~~~~~---------~~~~~~l~~~~~~Lk  214 (286)
T 3m70_A          148 WDHNENSIAFLNETKEKENLNISTALYDI-NAANI-QENYDFIVSTVVFMFLNR---------ERVPSIIKNMKEHTN  214 (286)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCEEEEECCG-GGCCC-CSCEEEEEECSSGGGSCG---------GGHHHHHHHHHHTEE
T ss_pred             EECCHHHHHHHHHHHHHcCCceEEEEecc-ccccc-cCCccEEEEccchhhCCH---------HHHHHHHHHHHHhcC
Confidence            599999999998774    2568999998 56776 899999999999998843         345668888887765

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.42  E-value=2.5e-07  Score=74.13  Aligned_cols=64  Identities=8%  Similarity=0.016  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHHhc-----------CCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDR-----------EVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r-----------~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l   69 (77)
                      +|+|++|++.|+++           ..+.+++++|+ ..+|+.+++||+|+++.+++|+.+         ..+..+++++
T Consensus       752 VDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa-~dLp~~d~sFDlVV~~eVLeHL~d---------p~l~~~L~eI  821 (950)
T 3htx_A          752 VDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI-LEFDSRLHDVDIGTCLEVIEHMEE---------DQACEFGEKV  821 (950)
T ss_dssp             EESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT-TSCCTTSCSCCEEEEESCGGGSCH---------HHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHhhhccchhhcCCCceEEEECch-HhCCcccCCeeEEEEeCchhhCCh---------HHHHHHHHHH
Confidence            59999999999883           13468999998 579999999999999999998854         4456788888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       822 ~RvLK  826 (950)
T 3htx_A          822 LSLFH  826 (950)
T ss_dssp             HHTTC
T ss_pred             HHHcC
Confidence            88775

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.42  E-value=1.8e-07  Score=61.90  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCC-CCceeeeeec
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFR-AGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~-~~sFD~v~s~   42 (77)
                      +|+|+.|++.|+++.++.+++++|+.+.+|+. +++||+|+|+
T Consensus        76 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           76 YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             EECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            59999999999999777899999986689998 9999999998

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.38  E-value=2.1e-08  Score=71.74  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHhcCCCC--c-EEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEG--D-LVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~--~-~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|++++...  . +...|. +.+|+.+++||+|+++.+++|+.|           ...+|+++++.|+
T Consensus       135 vD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~fD~I~~~~vl~h~~d-----------~~~~l~~~~r~Lk  199 (416)
T 4e2x_A          135 FEPSSGVAAKAREKGIRVRTDFFEKATA-DDVRRTEGPANVIYAANTLCHIPY-----------VQSVLEGVDALLA  199 (416)
T ss_dssp             ECCCHHHHHHHHTTTCCEECSCCSHHHH-HHHHHHHCCEEEEEEESCGGGCTT-----------HHHHHHHHHHHEE
T ss_pred             ECCCHHHHHHHHHcCCCcceeeechhhH-hhcccCCCCEEEEEECChHHhcCC-----------HHHHHHHHHHHcC
Confidence            599999999999986331  2 333443 568888999999999999999954           3568888888875

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.35  E-value=3.7e-08  Score=69.63  Aligned_cols=50  Identities=10%  Similarity=0.178  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCC------CCCCCcee-----eeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGV------PFRAGAFD-----GAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~l------Pf~~~sFD-----~v~s~~~l~w~~d~   51 (77)
                      +|.||.||+.||++..     ..+++++|+.+ +      |...++||     +++++++|||+.+.
T Consensus       111 VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~-~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~  176 (277)
T 3giw_A          111 VDNDPIVLTLSQGLLASTPEGRTAYVEADMLD-PASILDAPELRDTLDLTRPVALTVIAIVHFVLDE  176 (277)
T ss_dssp             EECCHHHHHTTHHHHCCCSSSEEEEEECCTTC-HHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGG
T ss_pred             EeCChHHHHHHHHHhccCCCCcEEEEEecccC-hhhhhcccccccccCcCCcchHHhhhhHhcCCch
Confidence            5999999999998753     25799999853 3      22246676     69999999999774

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.33  E-value=8.7e-07  Score=61.61  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCC-----CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPF-----RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf-----~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.... ++++|+ ..++.     .+++||+|+|+.+++|+.         .+.++..++++++.|
T Consensus        73 vD~S~~ml~~Ar~~~~~~-~v~~~~-~~~~~~~~~~~~~~fD~Vv~~~~l~~~~---------~~~~~~~l~~l~~lL  139 (261)
T 3iv6_A           73 FDFSQRMCDDLAEALADR-CVTIDL-LDITAEIPKELAGHFDFVLNDRLINRFT---------TEEARRACLGMLSLV  139 (261)
T ss_dssp             EESCHHHHHHHHHHTSSS-CCEEEE-CCTTSCCCGGGTTCCSEEEEESCGGGSC---------HHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHhc-cceeee-eecccccccccCCCccEEEEhhhhHhCC---------HHHHHHHHHHHHHhC
Confidence            599999999999986432 455565 23433     267999999999998762         355677888887766

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.31  E-value=7.3e-07  Score=57.31  Aligned_cols=62  Identities=21%  Similarity=0.289  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ...+++++|+ ..+|+.+++||+|+++..           |.+......+++++++.|+
T Consensus        57 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~-----------~~~~~~~~~~l~~~~~~L~  122 (202)
T 2kw5_A           57 VDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADFDIVADAWEGIVSIFC-----------HLPSSLRQQLYPKVYQGLK  122 (202)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTBSCCTTTCSEEEEECC-----------CCCHHHHHHHHHHHHTTCC
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEEcCh-hhcCCCcCCccEEEEEhh-----------cCCHHHHHHHHHHHHHhcC
Confidence            599999999998874    3568899997 578988999999999632           3345667788888887775

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.30  E-value=7.6e-07  Score=57.13  Aligned_cols=71  Identities=8%  Similarity=0.010  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.      .+.+++++|+ ..++ +.+++||.|+++..+  ++..+.......+...++++++++.|
T Consensus        53 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~L  129 (197)
T 3eey_A           53 FDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMFNLGY--LPSGDHSISTRPETTIQALSKAMELL  129 (197)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEEEESB--CTTSCTTCBCCHHHHHHHHHHHHHHE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEEcCCc--ccCcccccccCcccHHHHHHHHHHhC
Confidence            599999999999873      2468899997 4565 678999999999755  33333333334455566888888887


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       130 k  130 (197)
T 3eey_A          130 V  130 (197)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.28  E-value=3.6e-07  Score=61.89  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      ...+++++|+ ..+|   ++||.|+++.+++|+.+         +....+|+++++.|+
T Consensus        93 vd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~---~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~Lk  159 (287)
T 1kpg_A           93 LTLSKNQANHVQQLVANSENLRSKRVLLAGW-EQFD---EPVDRIVSIGAFEHFGH---------ERYDAFFSLAHRLLP  159 (287)
T ss_dssp             EESCHHHHHHHHHHHHTCCCCSCEEEEESCG-GGCC---CCCSEEEEESCGGGTCT---------TTHHHHHHHHHHHSC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCCeEEEECCh-hhCC---CCeeEEEEeCchhhcCh---------HHHHHHHHHHHHhcC
Confidence            599999999999873      2457899997 5565   88999999999998843         234567888888776


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       160 p  160 (287)
T 1kpg_A          160 A  160 (287)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.26  E-value=7.4e-07  Score=59.80  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.....++++|+ +.+|+.+++||+|+++.+
T Consensus       115 vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A          115 LDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC
T ss_pred             EeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC
Confidence            5999999999999987788999997 579999999999999765

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.22  E-value=5.6e-07  Score=58.02  Aligned_cols=60  Identities=17%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCC---CCCCC-ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGV---PFRAG-AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~l---Pf~~~-sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++ ....+.++|+ ..+   |+.++ +||+|+++.+++ ..++           ..+++++++.|+
T Consensus        80 vD~s~~~~~~a~~~-~~~~~~~~~~-~~~~~~~~~~~~~fD~v~~~~~l~-~~~~-----------~~~l~~~~~~L~  143 (227)
T 3e8s_A           80 VDGDRTLVDAARAA-GAGEVHLASY-AQLAEAKVPVGKDYDLICANFALL-HQDI-----------IELLSAMRTLLV  143 (227)
T ss_dssp             EESCHHHHHHHHHT-CSSCEEECCH-HHHHTTCSCCCCCEEEEEEESCCC-SSCC-----------HHHHHHHHHTEE
T ss_pred             EcCCHHHHHHHHHh-cccccchhhH-HhhcccccccCCCccEEEECchhh-hhhH-----------HHHHHHHHHHhC
Confidence            59999999999988 4567888886 345   65555 499999999998 4332           357777777664

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.21  E-value=9e-07  Score=56.27  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|. +.++ +.+++||+|+++.  .|+...+......++....+++++++.|+
T Consensus        50 vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~-~~l~~~~~~~fD~v~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  126 (185)
T 3mti_A           50 FDVQEQALGKTSQRLSDLGIENTELILDGH-ENLDHYVREPIRAAIFNL--GYLPSADKSVITKPHTTLEAIEKILDRLE  126 (185)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCCEEEEESCG-GGGGGTCCSCEEEEEEEE--C-----------CHHHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEeCcH-HHHHhhccCCcCEEEEeC--CCCCCcchhcccChhhHHHHHHHHHHhcC
Confidence            599999999998874     2457888775 4443 5688999999884  45543333333345566677888888775

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.16  E-value=2.8e-07  Score=61.02  Aligned_cols=65  Identities=11%  Similarity=-0.123  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCC-----CceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRA-----GAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|+.|++.|+++..  +.+++++|+ ..+++..     ..||+|+++.+++|+.+         +.+..+++++++.|
T Consensus        84 vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~d~v~~~~~~~~~~~---------~~~~~~l~~~~~~L  153 (245)
T 3ggd_A           84 LDVSKSALEIAAKENTAANISYRLLDG-LVPEQAAQIHSEIGDANIYMRTGFHHIPV---------EKRELLGQSLRILL  153 (245)
T ss_dssp             EESCHHHHHHHHHHSCCTTEEEEECCT-TCHHHHHHHHHHHCSCEEEEESSSTTSCG---------GGHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHhCcccCceEEECcc-cccccccccccccCccEEEEcchhhcCCH---------HHHHHHHHHHHHHc
Confidence            5999999999998864  468899998 4555432     34999999999998843         23467888888888


Q ss_pred             hh
Q psy4109          74 WS   75 (77)
Q Consensus        74 ~~   75 (77)
                      +.
T Consensus       154 kp  155 (245)
T 3ggd_A          154 GK  155 (245)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.16  E-value=1.2e-06  Score=56.49  Aligned_cols=46  Identities=11%  Similarity=0.154  Sum_probs=35.9

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|+|++|++.|+++..+.+++++|+ ..+|   ++||.|+++..++|+.+
T Consensus        80 vD~~~~~~~~a~~~~~~~~~~~~d~-~~~~---~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           80 FDIDPDAIETAKRNCGGVNFMVADV-SEIS---GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCG-GGCC---CCEEEEEECCCC-----
T ss_pred             EECCHHHHHHHHHhcCCCEEEECcH-HHCC---CCeeEEEECCCchhccC
Confidence            5999999999999876678999997 4565   78999999999999854

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.16  E-value=2.7e-06  Score=61.61  Aligned_cols=67  Identities=10%  Similarity=0.007  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    ...+++++|+ ...+..+++||.|+++..+||-      .......+..+++.+++.|+
T Consensus       261 vDis~~al~~A~~n~~~~~~~v~~~~~D~-~~~~~~~~~fD~Ii~npp~~~~------~~~~~~~~~~~l~~~~~~Lk  331 (381)
T 3dmg_A          261 VEDDLASVLSLQKGLEANALKAQALHSDV-DEALTEEARFDIIVTNPPFHVG------GAVILDVAQAFVNVAAARLR  331 (381)
T ss_dssp             EESBHHHHHHHHHHHHHTTCCCEEEECST-TTTSCTTCCEEEEEECCCCCTT------CSSCCHHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCeEEEEcch-hhccccCCCeEEEEECCchhhc------ccccHHHHHHHHHHHHHhcC
Confidence            599999999999874    2468999997 5576677999999999999874      23334677788888888875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.15  E-value=7.2e-07  Score=61.38  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.      ...+++++|+ ..+|   ++||+|+++.+++|+.+         +.+.++++++++.|+
T Consensus       119 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~---~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~Lk  185 (318)
T 2fk8_A          119 LTLSKNQHARCEQVLASIDTNRSRQVLLQGW-EDFA---EPVDRIVSIEAFEHFGH---------ENYDDFFKRCFNIMP  185 (318)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSCEEEEESCG-GGCC---CCCSEEEEESCGGGTCG---------GGHHHHHHHHHHHSC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECCh-HHCC---CCcCEEEEeChHHhcCH---------HHHHHHHHHHHHhcC
Confidence            599999999999873      1357889997 4565   88999999999998842         235668888888775

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.08  E-value=5.8e-06  Score=54.68  Aligned_cols=63  Identities=19%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ...+++++|+ ..+|+. ++||+|++.. +++++         +.+.+.++++++++.|+
T Consensus        69 vD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~~~-~~fD~v~~~~~~~~~~---------~~~~~~~~l~~~~~~L~  136 (252)
T 1wzn_A           69 LDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIAFK-NEFDAVTMFFSTIMYF---------DEEDLRKLFSKVAEALK  136 (252)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCCCC-SCEEEEEECSSGGGGS---------CHHHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEECCh-hhcccC-CCccEEEEcCCchhcC---------CHHHHHHHHHHHHHHcC
Confidence            599999999998764    3468999998 457764 6899999874 44443         24567888999988875

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.08  E-value=2.9e-06  Score=54.16  Aligned_cols=45  Identities=16%  Similarity=0.011  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|+|++|++.    ..+.+++++|+.+  |+.+++||+|+++..++|..+.
T Consensus        50 vD~s~~~~~~----~~~~~~~~~d~~~--~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           50 TDLNIRALES----HRGGNLVRADLLC--SINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             EESCHHHHHT----CSSSCEEECSTTT--TBCGGGCSEEEECCCCBTTCCC
T ss_pred             EECCHHHHhc----ccCCeEEECChhh--hcccCCCCEEEECCCCccCCcc
Confidence            5999999988    3357899999854  6777999999999999987665

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.06  E-value=8.2e-06  Score=51.17  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHhcC-----CC--CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VE--GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.     .+  .+++++|+.+  ++.+++||+|+++..++|          ....+..+++++++.|
T Consensus        80 ~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~----------~~~~~~~~l~~~~~~L  147 (194)
T 1dus_A           80 ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE--NVKDRKYNKIITNPPIRA----------GKEVLHRIIEEGKELL  147 (194)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT--TCTTSCEEEEEECCCSTT----------CHHHHHHHHHHHHHHE
T ss_pred             EECCHHHHHHHHHHHHHcCCCccceEEEECchhc--ccccCCceEEEECCCccc----------chhHHHHHHHHHHHHc
Confidence            589999999999874     22  6789999854  445889999999988765          2345667888888777


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       148 ~  148 (194)
T 1dus_A          148 K  148 (194)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.05  E-value=5.3e-06  Score=54.29  Aligned_cols=74  Identities=18%  Similarity=0.029  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCC--------CCChHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKT--------SHNPAKRLYKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~--------~~~p~~~l~~~~~~   68 (77)
                      +|+|++|++.|+++.    .+.+++++|+....++.+++||.|+++..+++..+....        +....+.+.++++.
T Consensus        85 vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  164 (230)
T 3evz_A           85 TEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEE  164 (230)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHH
Confidence            599999999998774    356899999633345668999999999887766542210        01112334677777


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      +++.|+
T Consensus       165 ~~~~Lk  170 (230)
T 3evz_A          165 AFDHLN  170 (230)
T ss_dssp             HGGGEE
T ss_pred             HHHHhC
Confidence            766654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.04  E-value=3.1e-06  Score=55.29  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHH-HHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAK-RLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~-~l~~~~~~l~~~   72 (77)
                      +|+|++|++.|+++.     .+..++++|+ ..+|  +.+++||.|+++....|...    .|.+.+ ....++..+++.
T Consensus        71 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~D~i~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~  145 (214)
T 1yzh_A           71 IDIQKSVLSYALDKVLEVGVPNIKLLWVDG-SDLTDYFEDGEIDRLYLNFSDPWPKK----RHEKRRLTYKTFLDTFKRI  145 (214)
T ss_dssp             EESCHHHHHHHHHHHHHHCCSSEEEEECCS-SCGGGTSCTTCCSEEEEESCCCCCSG----GGGGGSTTSHHHHHHHHHH
T ss_pred             EEcCHHHHHHHHHHHHHcCCCCEEEEeCCH-HHHHhhcCCCCCCEEEEECCCCcccc----chhhhccCCHHHHHHHHHH
Confidence            599999999998764     3568999998 4587  88899999999976555432    121110 235677777777


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       146 Lk  147 (214)
T 1yzh_A          146 LP  147 (214)
T ss_dssp             SC
T ss_pred             cC
Confidence            75

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.02  E-value=9.2e-07  Score=66.49  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCC--CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|+.|++.|+.+.     ..+++.++|+ +.+  ++.++.||+|+|+.+++|+.|+..     ...++++|+.|-+..
T Consensus        94 iD~~~~~i~~a~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~fD~v~~~e~~ehv~~~~~-----~~~~~~~~~tl~~~~  167 (569)
T 4azs_A           94 IDFQQENINVCRALAEENPDFAAEFRVGRI-EEVIAALEEGEFDLAIGLSVFHHIVHLHG-----IDEVKRLLSRLADVT  167 (569)
T ss_dssp             EESCHHHHHHHHHHHHTSTTSEEEEEECCH-HHHHHHCCTTSCSEEEEESCHHHHHHHHC-----HHHHHHHHHHHHHHS
T ss_pred             ECCCHHHHHHHHHHHHhcCCCceEEEECCH-HHHhhhccCCCccEEEECcchhcCCCHHH-----HHHHHHHHHHhcccc
Confidence            699999999998653     2458899997 566  577899999999999999987632     344566776665544


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       168 ~  168 (569)
T 4azs_A          168 Q  168 (569)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.02  E-value=2.7e-06  Score=56.97  Aligned_cols=51  Identities=14%  Similarity=0.110  Sum_probs=40.4

Q ss_pred             CCCCHH------HHHHHHhcC------CCCcEEEcc-C-CCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAF------YTNVARDRE------VEGDLVLSD-L-GQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~------ML~~A~~r~------~~~~~~~~D-~-~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|+|++      |++.|+++.      .+.+++++| . ...+|+.+++||+|+++.+++|+.++
T Consensus        74 vD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~  138 (275)
T 3bkx_A           74 IDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASA  138 (275)
T ss_dssp             ECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCH
T ss_pred             EECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCH
Confidence            478886      999998774      235788888 2 14688899999999999999998653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.96  E-value=6.5e-06  Score=58.75  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCC-CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPF-RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf-~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    . +.+++++|+.+.+|. .+++||.|+++..+++.            .++.+++++++.|+
T Consensus       201 vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~------------~~~~~l~~~~~~Lk  268 (373)
T 2qm3_A          201 LDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE------------AIRAFVGRGIATLK  268 (373)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH------------HHHHHHHHHHHTBC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH------------HHHHHHHHHHHHcc
Confidence            599999999999873    2 468999998544775 46799999999765432            24677777777664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.96  E-value=4.5e-06  Score=52.24  Aligned_cols=46  Identities=9%  Similarity=-0.159  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQW   47 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w   47 (77)
                      +|+|++|++.|+++.    .  .. ++++|+.+.+|..+++||+|+++.+++|
T Consensus        55 vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           55 FEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA  106 (178)
T ss_dssp             ECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCcccH
Confidence            599999999999773    1  24 7888875556555589999999998876

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.93  E-value=1.3e-05  Score=53.58  Aligned_cols=54  Identities=13%  Similarity=0.048  Sum_probs=37.3

Q ss_pred             EEEccCCCCCCC----CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109          20 LVLSDLGQGVPF----RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus        20 ~~~~D~~~~lPf----~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      ++++|+.+.++.    .+++||+|+|+..+....+...  ....+.+..+++++++.|+.
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~--~~~~~~~~~~l~~~~~~Lkp  206 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG--QVPGQPVAGLLRSLASALPA  206 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS--CCCHHHHHHHHHHHHHHSCT
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeeccccccc--cccccHHHHHHHHHHHhcCC
Confidence            899998542221    4458999999987765544321  24467788899999988863

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.89  E-value=1.3e-05  Score=55.23  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=48.0

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+| +|++.|+++.      ...+++++|+ ...|+.++ ||+|++..++|++.+         +...++++++++.|+
T Consensus       195 ~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~-~D~v~~~~~l~~~~~---------~~~~~~l~~~~~~L~  262 (335)
T 2r3s_A          195 VDWA-SVLEVAKENARIQGVASRYHTIAGSA-FEVDYGND-YDLVLLPNFLHHFDV---------ATCEQLLRKIKTALA  262 (335)
T ss_dssp             EECH-HHHHHHHHHHHHHTCGGGEEEEESCT-TTSCCCSC-EEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             EecH-HHHHHHHHHHHhcCCCcceEEEeccc-ccCCCCCC-CcEEEEcchhccCCH---------HHHHHHHHHHHHhCC
Confidence            5899 9999998873      1368899998 45676655 999999999988733         345678888888775

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.87  E-value=2.5e-06  Score=57.01  Aligned_cols=71  Identities=6%  Similarity=-0.071  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.+|  +.+++||.|++++...|...........   ...+++.+++.|
T Consensus        64 iD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~---~~~~l~~~~r~L  140 (218)
T 3dxy_A           64 IEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIV---QVPFAELVKSKL  140 (218)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSC---SHHHHHHHHHHE
T ss_pred             EEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhh---hHHHHHHHHHHc
Confidence            599999999998762     346899999743244  7899999999997766654322111000   124788888777


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       141 k  141 (218)
T 3dxy_A          141 Q  141 (218)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.87  E-value=6.6e-06  Score=55.53  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHhc----------C-CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHH--HHHH
Q psy4109           1 MKKNAFYTNVARDR----------E-VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKR--LYKF   65 (77)
Q Consensus         1 iDiS~~ML~~A~~r----------~-~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~--l~~~   65 (77)
                      +|+|+.|++.|+++          + .+.+++++|+.+.+|  |.+++||.|+.++.-.|....    |. .++  ...+
T Consensus        76 iDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~----h~-krr~~~~~~  150 (235)
T 3ckk_A           76 LEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRT----KH-KWRIISPTL  150 (235)
T ss_dssp             EESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC----------------CCCHHH
T ss_pred             EECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhh----hh-hhhhhhHHH
Confidence            69999999998754          1 346899999854477  889999999987655554321    11 111  1468


Q ss_pred             HHHHHHHHh
Q psy4109          66 FSSLFACLW   74 (77)
Q Consensus        66 ~~~l~~~L~   74 (77)
                      ++.+++.|+
T Consensus       151 l~~~~~~Lk  159 (235)
T 3ckk_A          151 LAEYAYVLR  159 (235)
T ss_dssp             HHHHHHHEE
T ss_pred             HHHHHHHCC
Confidence            888888875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.86  E-value=2.9e-05  Score=53.86  Aligned_cols=62  Identities=13%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.      ...+++.+|+.+  |++. +||+|++..++|++.+         +...+++++++++|+
T Consensus       199 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~p~-~~D~v~~~~vlh~~~~---------~~~~~~l~~~~~~L~  265 (332)
T 3i53_A          199 LDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD--PLPA-GAGGYVLSAVLHDWDD---------LSAVAILRRCAEAAG  265 (332)
T ss_dssp             EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCCC-SCSEEEEESCGGGSCH---------HHHHHHHHHHHHHHT
T ss_pred             ecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC--CCCC-CCcEEEEehhhccCCH---------HHHHHHHHHHHHhcC
Confidence            488 99999998762      236889999854  4434 7999999999998854         346678899998886


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       266 p  266 (332)
T 3i53_A          266 S  266 (332)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.85  E-value=8.5e-06  Score=53.75  Aligned_cols=70  Identities=11%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHH-HHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKR-LYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~-l~~~~~~l~~~   72 (77)
                      +|+|++|++.|+++.     .+.+++++|+ ..+|  +.+++||.|+++..-.|....    |...+. ...+++.+++.
T Consensus        68 iD~s~~~l~~a~~~~~~~~~~nv~~~~~d~-~~l~~~~~~~~~d~v~~~~~~p~~~~~----~~~~rl~~~~~l~~~~~~  142 (213)
T 2fca_A           68 IELFKSVIVTAVQKVKDSEAQNVKLLNIDA-DTLTDVFEPGEVKRVYLNFSDPWPKKR----HEKRRLTYSHFLKKYEEV  142 (213)
T ss_dssp             ECSCHHHHHHHHHHHHHSCCSSEEEECCCG-GGHHHHCCTTSCCEEEEESCCCCCSGG----GGGGSTTSHHHHHHHHHH
T ss_pred             EEechHHHHHHHHHHHHcCCCCEEEEeCCH-HHHHhhcCcCCcCEEEEECCCCCcCcc----ccccccCcHHHHHHHHHH
Confidence            699999999998762     3468999997 4576  788999999987655554321    222111 35788888888


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus       143 Lkp  145 (213)
T 2fca_A          143 MGK  145 (213)
T ss_dssp             HTT
T ss_pred             cCC
Confidence            863

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.81  E-value=1.2e-06  Score=57.95  Aligned_cols=50  Identities=10%  Similarity=-0.033  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD   52 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~   52 (77)
                      +|+|+.|++.|+++.      .+.+++++|+ ..++ .+++||+|+++..++|..+..
T Consensus       106 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~D~v~~~~~~~~~~~~~  161 (241)
T 3gdh_A          106 IDIDPVKIALARNNAEVYGIADKIEFICGDF-LLLA-SFLKADVVFLSPPWGGPDYAT  161 (241)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCH-HHHG-GGCCCSEEEECCCCSSGGGGG
T ss_pred             EECCHHHHHHHHHHHHHcCCCcCeEEEECCh-HHhc-ccCCCCEEEECCCcCCcchhh
Confidence            599999999998774      2468999997 4565 678999999999999987654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.79  E-value=1.5e-05  Score=56.08  Aligned_cols=65  Identities=18%  Similarity=0.103  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    ...+++.+|+. .  +.+++||.|+++..+||-.      ........++++++++.|+
T Consensus       226 vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~-~--~~~~~fD~Iv~~~~~~~g~------~~~~~~~~~~l~~~~~~Lk  294 (343)
T 2pjd_A          226 CDVSAPAVEASRATLAANGVEGEVFASNVF-S--EVKGRFDMIISNPPFHDGM------QTSLDAAQTLIRGAVRHLN  294 (343)
T ss_dssp             EESBHHHHHHHHHHHHHTTCCCEEEECSTT-T--TCCSCEEEEEECCCCCSSS------HHHHHHHHHHHHHHGGGEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCCEEEEcccc-c--cccCCeeEEEECCCcccCc------cCCHHHHHHHHHHHHHhCC
Confidence            599999999999874    33577888863 3  3488999999999987631      1234566788888887765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.79  E-value=1.6e-05  Score=53.54  Aligned_cols=73  Identities=11%  Similarity=0.006  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCC--CCCCceeeeeeccchhhhc-----cc----CCCCCChHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVP--FRAGAFDGAISISALQWLC-----NA----DKTSHNPAKRLY   63 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~-----d~----~~~~~~p~~~l~   63 (77)
                      +|+|++|++.|+++.    .  ..+++++|+. .++  +.+++||+|+++..+....     ++    ....|.+...+.
T Consensus        78 vDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~-~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~  156 (259)
T 3lpm_A           78 VEIQERLADMAKRSVAYNQLEDQIEIIEYDLK-KITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLE  156 (259)
T ss_dssp             ECCSHHHHHHHHHHHHHTTCTTTEEEECSCGG-GGGGTSCTTCEEEEEECCCC-----------------------HHHH
T ss_pred             EECCHHHHHHHHHHHHHCCCcccEEEEECcHH-HhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHH
Confidence            599999999998873    1  3588999984 444  5689999999986654331     11    112244456677


Q ss_pred             HHHHHHHHHHh
Q psy4109          64 KFFSSLFACLW   74 (77)
Q Consensus        64 ~~~~~l~~~L~   74 (77)
                      .+++.+++.|+
T Consensus       157 ~~l~~~~~~Lk  167 (259)
T 3lpm_A          157 DTIRVAASLLK  167 (259)
T ss_dssp             HHHHHHHHHEE
T ss_pred             HHHHHHHHHcc
Confidence            88888888775

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.76  E-value=7.6e-06  Score=54.82  Aligned_cols=63  Identities=14%  Similarity=0.017  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCC-CCCCCCCceeeeeec-----cchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQ-GVPFRAGAFDGAISI-----SALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~-~lPf~~~sFD~v~s~-----~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      ||+|++|++.|+++..    ..+++.+|+.. ..++.+++||.|+.-     .+++++           .....++++++
T Consensus        89 id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~-----------~~~~~~~~e~~  157 (236)
T 3orh_A           89 IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHT-----------HQFNFIKNHAF  157 (236)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTT-----------HHHHHHHHTHH
T ss_pred             EeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhh-----------cchhhhhhhhh
Confidence            6999999999998752    34678888532 235789999999753     333332           34567888888


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       158 rvLk  161 (236)
T 3orh_A          158 RLLK  161 (236)
T ss_dssp             HHEE
T ss_pred             heeC
Confidence            8875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.75  E-value=1.4e-05  Score=57.61  Aligned_cols=66  Identities=8%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHhcCC--------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV--------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+|+.|++.|+++..        ..+++++|+.+  ++.+++||.|+++..+|+....      ......++|+.+++.
T Consensus       252 vD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~--~~~~~~fD~Ii~nppfh~~~~~------~~~~~~~~l~~~~~~  323 (375)
T 4dcm_A          252 VDESPMAVASSRLNVETNMPEALDRCEFMINNALS--GVEPFRFNAVLCNPPFHQQHAL------TDNVAWEMFHHARRC  323 (375)
T ss_dssp             EESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT--TCCTTCEEEEEECCCC-------------CCHHHHHHHHHHHH
T ss_pred             EECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc--cCCCCCeeEEEECCCcccCccc------CHHHHHHHHHHHHHh
Confidence            5999999999997641        24669999854  6678899999999998864221      122334678888887


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       324 Lk  325 (375)
T 4dcm_A          324 LK  325 (375)
T ss_dssp             EE
T ss_pred             CC
Confidence            75

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.74  E-value=3.3e-05  Score=54.66  Aligned_cols=64  Identities=13%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCC-CCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQG-VPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~-lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+ ++|++.|+++..      ..+++.+|+.+. +|++ ++||+|++..++|++.+         +...+++++++++|
T Consensus       209 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~---------~~~~~~l~~~~~~L  277 (363)
T 3dp7_A          209 VDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSE---------EEVISILTRVAQSI  277 (363)
T ss_dssp             EEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCH---------HHHHHHHHHHHHHC
T ss_pred             EeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEechhhhCCH---------HHHHHHHHHHHHhc
Confidence            488 999999998732      358899998542 1554 78999999999987743         45567888888888


Q ss_pred             hh
Q psy4109          74 WS   75 (77)
Q Consensus        74 ~~   75 (77)
                      +.
T Consensus       278 ~p  279 (363)
T 3dp7_A          278 GK  279 (363)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.74  E-value=6e-06  Score=52.88  Aligned_cols=60  Identities=8%  Similarity=-0.012  Sum_probs=44.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|++|++.|+++.     .+.+++++|+. .++  +.+++||.|+++..++|.          .+.+.+.++.+++
T Consensus        73 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~fD~i~~~~p~~~~----------~~~~~~~l~~~~~  139 (189)
T 3p9n_A           73 VESDQRSAAVIARNIEALGLSGATLRRGAVA-AVVAAGTTSPVDLVLADPPYNVD----------SADVDAILAALGT  139 (189)
T ss_dssp             EECCHHHHHHHHHHHHHHTCSCEEEEESCHH-HHHHHCCSSCCSEEEECCCTTSC----------HHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEccHH-HHHhhccCCCccEEEECCCCCcc----------hhhHHHHHHHHHh
Confidence            599999999999874     24689999974 343  457899999999887653          2455667777766

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.74  E-value=2.9e-05  Score=55.55  Aligned_cols=69  Identities=19%  Similarity=0.072  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|+.|++.|+++.    .  ..+++++|+ ..+|+.+++||.|+++..+..-..   ..+....-.+++++.+.+.|
T Consensus       247 ~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~-~~~~~~~~~fD~Ii~npPyg~r~~---~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          247 IEKYRKHLIGAEMNALAAGVLDKIKFIQGDA-TQLSQYVDSVDFAISNLPYGLKIG---KKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGCEEEECCG-GGGGGTCSCEEEEEEECCCC---------CCHHHHHHHHHHHHHHHE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCcccCCcCEEEECCCCCcccC---cchhHHHHHHHHHHHHHHHc
Confidence            599999999999874    2  468999998 578988899999999976543211   11223333356666666554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.73  E-value=2.6e-05  Score=55.17  Aligned_cols=64  Identities=16%  Similarity=-0.015  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+ |++.|+++.      ...+++++|+ ..+|+++++||+|+|..+...+..        ...+..++..+++.|+
T Consensus        93 vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Ivs~~~~~~l~~--------~~~~~~~l~~~~~~Lk  162 (340)
T 2fyt_A           93 VDQSE-ILYQAMDIIRLNKLEDTITLIKGKI-EEVHLPVEKVDVIISEWMGYFLLF--------ESMLDSVLYAKNKYLA  162 (340)
T ss_dssp             EESST-HHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSCSCEEEEEECCCBTTBTT--------TCHHHHHHHHHHHHEE
T ss_pred             EChHH-HHHHHHHHHHHcCCCCcEEEEEeeH-HHhcCCCCcEEEEEEcCchhhccC--------HHHHHHHHHHHHhhcC
Confidence            58996 999998763      2468899998 568888899999999864222211        1345567777777765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.73  E-value=5.1e-05  Score=51.50  Aligned_cols=74  Identities=9%  Similarity=0.027  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHhcCCC---------CcEEEccCCCCC------CCCCCceeeeeeccchhhhccc---C----CCCCCh
Q psy4109           1 MKKNAFYTNVARDREVE---------GDLVLSDLGQGV------PFRAGAFDGAISISALQWLCNA---D----KTSHNP   58 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~---------~~~~~~D~~~~l------Pf~~~sFD~v~s~~~l~w~~d~---~----~~~~~p   58 (77)
                      +|+|++|++.|+++...         .+++++|+.+.+      ++.+++||.|+++.-+.+..+.   +    ..-|..
T Consensus        66 vDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~  145 (260)
T 2ozv_A           66 YERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMT  145 (260)
T ss_dssp             EESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC--------------------
T ss_pred             EECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcC
Confidence            59999999999987532         578999985421      3678999999999765543210   0    000111


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy4109          59 AKRLYKFFSSLFACLW   74 (77)
Q Consensus        59 ~~~l~~~~~~l~~~L~   74 (77)
                      ...+..+++.+++.|+
T Consensus       146 ~~~~~~~l~~~~~~Lk  161 (260)
T 2ozv_A          146 EGLFEDWIRTASAIMV  161 (260)
T ss_dssp             -CCHHHHHHHHHHHEE
T ss_pred             cCCHHHHHHHHHHHcC
Confidence            2225667777777665

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.72  E-value=1.2e-05  Score=57.05  Aligned_cols=64  Identities=13%  Similarity=-0.026  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+| +|++.|+++.    .  ..+++++|+ +.+|+++++||+|+|..+.+++...        ..+..++..+++.|+
T Consensus        95 vD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Iis~~~~~~l~~~--------~~~~~~l~~~~r~Lk  164 (349)
T 3q7e_A           95 IECS-SISDYAVKIVKANKLDHVVTIIKGKV-EEVELPVEKVDIIISEWMGYCLFYE--------SMLNTVLHARDKWLA  164 (349)
T ss_dssp             EECS-THHHHHHHHHHHTTCTTTEEEEESCT-TTCCCSSSCEEEEEECCCBBTBTBT--------CCHHHHHHHHHHHEE
T ss_pred             ECcH-HHHHHHHHHHHHcCCCCcEEEEECcH-HHccCCCCceEEEEEccccccccCc--------hhHHHHHHHHHHhCC
Confidence            5899 5999998763    1  158999998 6789989999999998765554322        224456666666664

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.70  E-value=8.9e-06  Score=56.76  Aligned_cols=64  Identities=13%  Similarity=0.091  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCC--CCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPF--RAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf--~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~   67 (77)
                      +|+|++|++.|+++.         +..+++.+|+ ..++.  .+++||+|++....++.         |...|  +++|+
T Consensus       125 vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~-~~~~~~~~~~~fDvIi~d~~~~~~---------~~~~l~~~~~l~  194 (304)
T 3bwc_A          125 VDIDGEVMEQSKQHFPQISRSLADPRATVRVGDG-LAFVRQTPDNTYDVVIIDTTDPAG---------PASKLFGEAFYK  194 (304)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-HHHHHSSCTTCEEEEEEECC------------------CCHHHHH
T ss_pred             EECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH-HHHHHhccCCceeEEEECCCCccc---------cchhhhHHHHHH
Confidence            599999999999875         2457899997 44554  47899999998765432         33444  67888


Q ss_pred             HHHHHHh
Q psy4109          68 SLFACLW   74 (77)
Q Consensus        68 ~l~~~L~   74 (77)
                      .++++|+
T Consensus       195 ~~~~~Lk  201 (304)
T 3bwc_A          195 DVLRILK  201 (304)
T ss_dssp             HHHHHEE
T ss_pred             HHHHhcC
Confidence            8888876

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.69  E-value=1.9e-05  Score=50.96  Aligned_cols=49  Identities=16%  Similarity=-0.088  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|+|++|++.|+++.     .+.+++++|+. ..+..+++||.|+++.+++|+.+
T Consensus       105 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~D~i~~~~~~~~~~~  158 (210)
T 3lbf_A          105 VERIKGLQWQARRRLKNLDLHNVSTRHGDGW-QGWQARAPFDAIIVTAAPPEIPT  158 (210)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCGGGCCEEEEEESSBCSSCCT
T ss_pred             EecCHHHHHHHHHHHHHcCCCceEEEECCcc-cCCccCCCccEEEEccchhhhhH
Confidence            599999999999874     23688999974 45556889999999999988753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.69  E-value=1.5e-05  Score=51.41  Aligned_cols=45  Identities=16%  Similarity=0.067  Sum_probs=35.9

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|+.|++.|+++.    . +.+++++|+.   ++.+++||+|+++.+++++
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~~~~fD~i~~~~~~~~~  138 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSLL---ADVDGKFDLIVANILAEIL  138 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESSTT---TTCCSCEEEEEEESCHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEecccc---ccCCCCceEEEECCcHHHH
Confidence            599999999999873    2 2688999973   3457899999999888764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.68  E-value=1.3e-05  Score=56.98  Aligned_cols=57  Identities=9%  Similarity=0.054  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+ ..+|  +++||+|++....          .    ...++|+++++.|+
T Consensus       152 IDis~~~l~~Ar~~~~~~gl~~v~~v~gDa-~~l~--d~~FDvV~~~a~~----------~----d~~~~l~el~r~Lk  213 (298)
T 3fpf_A          152 VEIEPDIAELSRKVIEGLGVDGVNVITGDE-TVID--GLEFDVLMVAALA----------E----PKRRVFRNIHRYVD  213 (298)
T ss_dssp             EESSHHHHHHHHHHHHHHTCCSEEEEESCG-GGGG--GCCCSEEEECTTC----------S----CHHHHHHHHHHHCC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCeEEEECch-hhCC--CCCcCEEEECCCc----------c----CHHHHHHHHHHHcC
Confidence            599999999999873     2458999997 4576  7899999986541          1    23457777777765

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.64  E-value=3.7e-05  Score=54.65  Aligned_cols=63  Identities=14%  Similarity=0.041  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +||++.|++.++++.    +..++.++|..  .+-.++.||+++++-+++.+++..+..         .| +|+.+|+.
T Consensus       162 ~DId~~~le~a~~~l~~~g~~~~~~v~D~~--~~~p~~~~DvaL~lkti~~Le~q~kg~---------g~-~ll~aL~~  228 (281)
T 3lcv_B          162 SDIDARLVGFVDEALTRLNVPHRTNVADLL--EDRLDEPADVTLLLKTLPCLETQQRGS---------GW-EVIDIVNS  228 (281)
T ss_dssp             EESBHHHHHHHHHHHHHTTCCEEEEECCTT--TSCCCSCCSEEEETTCHHHHHHHSTTH---------HH-HHHHHSSC
T ss_pred             EeCCHHHHHHHHHHHHhcCCCceEEEeeec--ccCCCCCcchHHHHHHHHHhhhhhhHH---------HH-HHHHHhCC
Confidence            599999999999874    44678889974  344688899999999999998876544         44 66666653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.64  E-value=1.8e-05  Score=51.80  Aligned_cols=48  Identities=19%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|++|++.|+++..   +.+++++|+.+.+| .+++||.|++..+++++.
T Consensus        98 vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~~  148 (231)
T 1vbf_A           98 VEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTLL  148 (231)
T ss_dssp             EESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSCC
T ss_pred             EeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHHH
Confidence            5899999999998853   46789999754343 578999999999998763

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.62  E-value=3.2e-05  Score=54.21  Aligned_cols=53  Identities=21%  Similarity=0.061  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCC
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTS   55 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~   55 (77)
                      +||+++|++.|+++.    +...+.++|.. ..| .+++||+++++-++|.+++..+..
T Consensus       132 ~DId~~~i~~ar~~~~~~g~~~~~~v~D~~-~~~-~~~~~DvvLllk~lh~LE~q~~~~  188 (253)
T 3frh_A          132 CDIHQGLGDVITPFAREKDWDFTFALQDVL-CAP-PAEAGDLALIFKLLPLLEREQAGS  188 (253)
T ss_dssp             EESBHHHHHHHHHHHHHTTCEEEEEECCTT-TSC-CCCBCSEEEEESCHHHHHHHSTTH
T ss_pred             EeCCHHHHHHHHHHHHhcCCCceEEEeecc-cCC-CCCCcchHHHHHHHHHhhhhchhh
Confidence            599999999999774    44578999974 344 456899999999999998876544

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.59  E-value=7.1e-05  Score=48.20  Aligned_cols=59  Identities=17%  Similarity=0.067  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.++ ..++||.|++..+++              .+.++++.+++.|+
T Consensus        70 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~~--------------~~~~~l~~~~~~Lk  133 (204)
T 3e05_A           70 LERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPDRVFIGGSGG--------------MLEEIIDAVDRRLK  133 (204)
T ss_dssp             EECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCSEEEESCCTT--------------CHHHHHHHHHHHCC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCCEEEECCCCc--------------CHHHHHHHHHHhcC
Confidence            599999999998764     246889999754443 347799999997653              23456777776665

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.59  E-value=2.4e-05  Score=53.23  Aligned_cols=50  Identities=10%  Similarity=0.009  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD   52 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~   52 (77)
                      +|+|++|++.|+++.    ...++..+|...  ...+++||+|++..++|.+++..
T Consensus        79 ~Di~~~~leiar~~~~~~g~~~~v~~~d~~~--~~~~~~~DvVLa~k~LHlL~~~~  132 (200)
T 3fzg_A           79 YDIDRAEIAFLSSIIGKLKTTIKYRFLNKES--DVYKGTYDVVFLLKMLPVLKQQD  132 (200)
T ss_dssp             ECSCHHHHHHHHHHHHHSCCSSEEEEECCHH--HHTTSEEEEEEEETCHHHHHHTT
T ss_pred             EeCCHHHHHHHHHHHHhcCCCccEEEecccc--cCCCCCcChhhHhhHHHhhhhhH
Confidence            599999999999875    222566677633  34689999999999999995543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.58  E-value=9.4e-05  Score=51.76  Aligned_cols=61  Identities=15%  Similarity=0.050  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.    .  ..+++++|+.+.+|  . .||+|++..++|++.+         ....++++++++.|+
T Consensus       212 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~-~~D~v~~~~vl~~~~~---------~~~~~~l~~~~~~L~  278 (374)
T 1qzz_A          212 VEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP--V-TADVVLLSFVLLNWSD---------EDALTILRGCVRALE  278 (374)
T ss_dssp             EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--C-CEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             EeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC--C-CCCEEEEeccccCCCH---------HHHHHHHHHHHHhcC
Confidence            588 99999998763    1  36889999855444  3 3999999999998744         334568888888775

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.57  E-value=2.3e-05  Score=54.60  Aligned_cols=63  Identities=13%  Similarity=0.093  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+ ++|++.|+++.      ...+++.+|+.+ .| +.++.||+|++..++|++.+         +...+++++++++|
T Consensus       209 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~~~~vlh~~~~---------~~~~~~l~~~~~~L  277 (352)
T 3mcz_A          209 WDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLD-ARNFEGGAADVVMLNDCLHYFDA---------REAREVIGHAAGLV  277 (352)
T ss_dssp             EEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTC-GGGGTTCCEEEEEEESCGGGSCH---------HHHHHHHHHHHHTE
T ss_pred             EEC-HHHHHHHHHHHHhcCCCCceEEEeCCccc-CcccCCCCccEEEEecccccCCH---------HHHHHHHHHHHHHc
Confidence            478 78999998763      136889999854 44 35667999999999998844         34567888888877


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       278 ~  278 (352)
T 3mcz_A          278 K  278 (352)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.56  E-value=3.7e-05  Score=49.74  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          18 GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+++++|+ ..+|+.+++||+|+++.++|| .+           ...+++++++.|+
T Consensus        99 ~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~-~~-----------~~~~l~~~~~~L~  142 (215)
T 2zfu_A           99 PRVTVCDM-AQVPLEDESVDVAVFCLSLMG-TN-----------IRDFLEEANRVLK  142 (215)
T ss_dssp             TTEEESCT-TSCSCCTTCEEEEEEESCCCS-SC-----------HHHHHHHHHHHEE
T ss_pred             ceEEEecc-ccCCCCCCCEeEEEEehhccc-cC-----------HHHHHHHHHHhCC
Confidence            57889997 569999999999999999974 22           2457777777765

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.53  E-value=2.1e-05  Score=54.73  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +|+|++|++.|+++.         +..+++++|+.+.++..+++||+|++...-.|+        .|...|  +++|+.+
T Consensus       120 vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~--------~~~~~l~~~~~l~~~  191 (296)
T 1inl_A          120 CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA--------GQGGHLFTEEFYQAC  191 (296)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC------------------CCSHHHHHHH
T ss_pred             EECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCccc--------CchhhhhHHHHHHHH
Confidence            599999999999874         235789999644355567899999997543332        122333  6788888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       192 ~~~Lk  196 (296)
T 1inl_A          192 YDALK  196 (296)
T ss_dssp             HHHEE
T ss_pred             HHhcC
Confidence            88775

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.53  E-value=1.6e-05  Score=51.88  Aligned_cols=46  Identities=4%  Similarity=-0.068  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.+|+.+++||.|+++..++
T Consensus        83 vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           83 IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            599999999999774     2468899997444677788999999987654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.53  E-value=3.1e-05  Score=53.34  Aligned_cols=67  Identities=9%  Similarity=-0.056  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|++++|++.|+++.         +..+++.+|+.+-++..+++||+|++....++...    .+.   .-+++|+.+++
T Consensus       105 vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~----~~l---~~~~~~~~~~~  177 (275)
T 1iy9_A          105 VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPA----VNL---FTKGFYAGIAK  177 (275)
T ss_dssp             EESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCC----CCC---STTHHHHHHHH
T ss_pred             EECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcc----hhh---hHHHHHHHHHH
Confidence            589999999999864         23588999974435555789999999865433211    000   11467777777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       178 ~L~  180 (275)
T 1iy9_A          178 ALK  180 (275)
T ss_dssp             HEE
T ss_pred             hcC
Confidence            775

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.51  E-value=9.6e-05  Score=52.34  Aligned_cols=61  Identities=8%  Similarity=0.049  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.      ...+++.+|+.  .|++. .||+|++..++|++.+         ...++++++++++|+
T Consensus       232 ~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~--~~~p~-~~D~v~~~~vlh~~~d---------~~~~~~L~~~~~~L~  298 (369)
T 3gwz_A          232 LER-PPVAEEARELLTGRGLADRCEILPGDFF--ETIPD-GADVYLIKHVLHDWDD---------DDVVRILRRIATAMK  298 (369)
T ss_dssp             EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT--TCCCS-SCSEEEEESCGGGSCH---------HHHHHHHHHHHTTCC
T ss_pred             EcC-HHHHHHHHHhhhhcCcCCceEEeccCCC--CCCCC-CceEEEhhhhhccCCH---------HHHHHHHHHHHHHcC
Confidence            488 99999998763      23689999985  35544 7999999999998854         344567888887775

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.49  E-value=1.4e-05  Score=56.12  Aligned_cols=68  Identities=21%  Similarity=0.146  Sum_probs=48.0

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~   68 (77)
                      +|+|++|++.|+++.          +..+++.+|+.+-++..+++||+|++....+|-      ...|...|  +++|+.
T Consensus       107 vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~------~~~~~~~l~~~~~l~~  180 (314)
T 1uir_A          107 VDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVG------EDNPARLLYTVEFYRL  180 (314)
T ss_dssp             EESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBS------TTCGGGGGSSHHHHHH
T ss_pred             EECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCCccc------ccCcchhccHHHHHHH
Confidence            589999999999764          235789999743355568899999998765541      01223333  678888


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      +++.|+
T Consensus       181 ~~~~Lk  186 (314)
T 1uir_A          181 VKAHLN  186 (314)
T ss_dssp             HHHTEE
T ss_pred             HHHhcC
Confidence            888775

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.48  E-value=4.5e-05  Score=51.74  Aligned_cols=45  Identities=11%  Similarity=0.014  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQW   47 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w   47 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+  ++.+++||.|+|+..+.+
T Consensus       139 vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~--~~~~~~fD~Iv~npPy~~  188 (276)
T 2b3t_A          139 VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS--ALAGQQFAMIVSNPPYID  188 (276)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG--GGTTCCEEEEEECCCCBC
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEcchhh--hcccCCccEEEECCCCCC
Confidence            599999999999873     246889999754  445789999999965443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.48  E-value=6.3e-05  Score=52.03  Aligned_cols=61  Identities=16%  Similarity=0.020  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.      ...+++.+|+.+  |++ ++||+|++..++|++.+         ....+++++++++|+
T Consensus       197 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~-~~~D~v~~~~vl~~~~~---------~~~~~~l~~~~~~L~  263 (334)
T 2ip2_A          197 LDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ--EVP-SNGDIYLLSRIIGDLDE---------AASLRLLGNCREAMA  263 (334)
T ss_dssp             EEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT--CCC-SSCSEEEEESCGGGCCH---------HHHHHHHHHHHHHSC
T ss_pred             eCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC--CCC-CCCCEEEEchhccCCCH---------HHHHHHHHHHHHhcC
Confidence            488 99999998874      246889999854  443 67999999999987643         344678888888876

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.48  E-value=2e-05  Score=55.68  Aligned_cols=65  Identities=22%  Similarity=0.145  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +|+|++|++.|+++..         ..+++.+|+.+.++..+++||+|++...-++         .|.+.+  +++|+.+
T Consensus       138 vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~---------~~~~~l~t~~~l~~~  208 (314)
T 2b2c_A          138 CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV---------GPAESLFGQSYYELL  208 (314)
T ss_dssp             ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------HHHHH
T ss_pred             EECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC---------CcchhhhHHHHHHHH
Confidence            5999999999998752         2478888864334556789999999764221         123444  6888888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       209 ~~~Lk  213 (314)
T 2b2c_A          209 RDALK  213 (314)
T ss_dssp             HHHEE
T ss_pred             HhhcC
Confidence            88875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.46  E-value=1.8e-05  Score=55.88  Aligned_cols=65  Identities=15%  Similarity=0.173  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +|+|++|++.|+++..         ..+++++|+.+.++..+++||+|++...-.|         .|...+  +++|+.+
T Consensus       146 vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~---------~~~~~l~~~~~l~~~  216 (321)
T 2pt6_A          146 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI---------GPAETLFNQNFYEKI  216 (321)
T ss_dssp             EESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSS---------SGGGGGSSHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCC---------CcchhhhHHHHHHHH
Confidence            5999999999998743         3478899964334445789999999753221         123333  6788888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       217 ~~~Lk  221 (321)
T 2pt6_A          217 YNALK  221 (321)
T ss_dssp             HHHEE
T ss_pred             HHhcC
Confidence            88775

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.45  E-value=2.2e-05  Score=54.30  Aligned_cols=65  Identities=15%  Similarity=0.173  Sum_probs=46.5

Q ss_pred             CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +|++++|++.|+++..         ..+++++|+.+.++..+++||+|++....++         .|...|  +++|+.+
T Consensus       108 vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~---------~~~~~l~~~~~l~~~  178 (283)
T 2i7c_A          108 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI---------GPAETLFNQNFYEKI  178 (283)
T ss_dssp             EESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTT---------TGGGGGSSHHHHHHH
T ss_pred             EECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCC---------CcchhhhHHHHHHHH
Confidence            5899999999998752         3478899974334444789999999764332         223344  6788888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       179 ~~~L~  183 (283)
T 2i7c_A          179 YNALK  183 (283)
T ss_dssp             HHHEE
T ss_pred             HHhcC
Confidence            88875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.45  E-value=7e-05  Score=52.07  Aligned_cols=47  Identities=9%  Similarity=-0.090  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.     .+.+++++|+. ..+..+++||.|++..+++++
T Consensus       106 vD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~-~~~~~~~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          106 VEYSRKICEIAKRNVERLGIENVIFVCGDGY-YGVPEFSPYDVIFVTVGVDEV  157 (317)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCGGGCCEEEEEECSBBSCC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCeEEEECChh-hccccCCCeEEEEEcCCHHHH
Confidence            589999999999873     23688999974 444467899999999999876

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.43  E-value=2.9e-05  Score=51.58  Aligned_cols=43  Identities=7%  Similarity=0.062  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.      .+.+++++|+.+.+| ..+++||.|++..
T Consensus       101 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A          101 IERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             EECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            599999999999774      146899999866566 6689999999764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.42  E-value=0.00013  Score=51.39  Aligned_cols=70  Identities=11%  Similarity=0.034  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++..     ..+++++|+ ..+|...+.||.|+++.-+.+-...   .....+..+.+++.+.+.|+
T Consensus       234 ~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~-~~~~~~~~~~D~Ii~npPyg~r~~~---~~~~~~~~~~~~~~~~~~Lk  308 (354)
T 3tma_A          234 GDLDEKRLGLAREAALASGLSWIRFLRADA-RHLPRFFPEVDRILANPPHGLRLGR---KEGLFHLYWDFLRGALALLP  308 (354)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCEEEECCG-GGGGGTCCCCSEEEECCCSCC-------CHHHHHHHHHHHHHHHHTSC
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeCCh-hhCccccCCCCEEEECCCCcCccCC---cccHHHHHHHHHHHHHHhcC
Confidence            5999999999998742     468999998 5688888889999998766442111   11122223556666666553

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.42  E-value=1.9e-05  Score=52.48  Aligned_cols=42  Identities=5%  Similarity=-0.045  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCC---CCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFR---AGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~---~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.+|+.   +++||.|+|..
T Consensus       100 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A          100 VDSLNKRITFLEKLSEALQLENTTFCHDRA-ETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             EESCHHHHHHHHHHHHHHTCSSEEEEESCH-HHHTTCTTTTTCEEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCEEEEeccH-HHhcccccccCCccEEEEec
Confidence            599999999998762     2468899997 567764   68999999976

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.41  E-value=7.4e-05  Score=52.81  Aligned_cols=59  Identities=14%  Similarity=0.008  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|++. ...+++.+|+.+  |+++  ||+|++..++|++.|         ....+++++++++|+
T Consensus       239 ~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~~--~D~v~~~~~lh~~~d---------~~~~~~l~~~~~~L~  297 (372)
T 1fp1_D          239 FDL-PQVIENAPPL-SGIEHVGGDMFA--SVPQ--GDAMILKAVCHNWSD---------EKCIEFLSNCHKALS  297 (372)
T ss_dssp             EEC-HHHHTTCCCC-TTEEEEECCTTT--CCCC--EEEEEEESSGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             eCh-HHHHHhhhhc-CCCEEEeCCccc--CCCC--CCEEEEecccccCCH---------HHHHHHHHHHHHhcC
Confidence            488 9999988764 457899999854  5544  999999999998854         334578888888875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.40  E-value=2.8e-05  Score=54.51  Aligned_cols=67  Identities=13%  Similarity=-0.053  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|++|++.|+++.         +..+++.+|+.+-++..+++||+|++....++-.       ......+++|+.+++
T Consensus       125 vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~-------~~~l~~~~~l~~~~~  197 (304)
T 2o07_A          125 CEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGP-------AESLFKESYYQLMKT  197 (304)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC------------------CHHHHHHHH
T ss_pred             EECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCc-------chhhhHHHHHHHHHh
Confidence            589999999999864         2357889996433555678999999976543311       111123568888888


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       198 ~Lk  200 (304)
T 2o07_A          198 ALK  200 (304)
T ss_dssp             HEE
T ss_pred             ccC
Confidence            775

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.39  E-value=9.6e-05  Score=51.82  Aligned_cols=61  Identities=7%  Similarity=0.023  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHhcC-----C-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----V-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.     . ..+++.+|+ ...|+.++  |+|++..++|++.+         +...+++++++++|+
T Consensus       220 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~--D~v~~~~vlh~~~d---------~~~~~~l~~~~~~L~  286 (359)
T 1x19_A          220 LNL-PGAIDLVNENAAEKGVADRMRGIAVDI-YKESYPEA--DAVLFCRILYSANE---------QLSTIMCKKAFDAMR  286 (359)
T ss_dssp             EEC-GGGHHHHHHHHHHTTCTTTEEEEECCT-TTSCCCCC--SEEEEESCGGGSCH---------HHHHHHHHHHHTTCC
T ss_pred             Eec-HHHHHHHHHHHHhcCCCCCEEEEeCcc-ccCCCCCC--CEEEEechhccCCH---------HHHHHHHHHHHHhcC
Confidence            588 99999998762     2 268899998 45677654  99999999987743         456778888887775

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.36  E-value=4.5e-06  Score=51.30  Aligned_cols=57  Identities=9%  Similarity=-0.105  Sum_probs=36.8

Q ss_pred             CCcEEEccCCCCCC--------CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          17 EGDLVLSDLGQGVP--------FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        17 ~~~~~~~D~~~~lP--------f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      ..+++++|+ ..+|        +.+++||.|+++.+++|..+.........+.+..+++++++.|+
T Consensus        63 ~~~~~~~d~-~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  127 (180)
T 1ej0_A           63 GVDFLQGDF-RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA  127 (180)
T ss_dssp             TEEEEESCT-TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             cEEEEEccc-ccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC
Confidence            357888997 4566        77899999999999888743211000001122677777777765

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.35  E-value=1.6e-05  Score=59.15  Aligned_cols=57  Identities=18%  Similarity=0.167  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCC------CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFR------AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~------~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|.    .+..+.+++++|+ ..+||.      +++||+|+|.++ |++.           ...++|+++++.|+
T Consensus       253 VDiSp~m~----~~~~rI~fv~GDa-~dlpf~~~l~~~d~sFDlVisdgs-H~~~-----------d~~~aL~el~rvLK  315 (419)
T 3sso_A          253 LDIMDKSH----VDELRIRTIQGDQ-NDAEFLDRIARRYGPFDIVIDDGS-HINA-----------HVRTSFAALFPHVR  315 (419)
T ss_dssp             EESSCCGG----GCBTTEEEEECCT-TCHHHHHHHHHHHCCEEEEEECSC-CCHH-----------HHHHHHHHHGGGEE
T ss_pred             EECCHHHh----hcCCCcEEEEecc-cccchhhhhhcccCCccEEEECCc-ccch-----------hHHHHHHHHHHhcC
Confidence            58999983    2344678999998 578887      799999999865 4442           34567888887775

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.35  E-value=0.00013  Score=51.18  Aligned_cols=60  Identities=8%  Similarity=-0.006  Sum_probs=46.3

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+ ++|++.|++. ...+++.+|+.+  |+++  ||+|++..++|++.|         ....+++++++++|+.
T Consensus       218 ~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~p~--~D~v~~~~~lh~~~d---------~~~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          218 FDR-PQVVENLSGS-NNLTYVGGDMFT--SIPN--ADAVLLKYILHNWTD---------KDCLRILKKCKEAVTN  277 (352)
T ss_dssp             EEC-HHHHTTCCCB-TTEEEEECCTTT--CCCC--CSEEEEESCGGGSCH---------HHHHHHHHHHHHHHSG
T ss_pred             eeC-HHHHhhcccC-CCcEEEeccccC--CCCC--ccEEEeehhhccCCH---------HHHHHHHHHHHHhCCC
Confidence            488 9999998764 347899999854  4432  999999999998744         3455788999988864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.35  E-value=1.5e-06  Score=55.63  Aligned_cols=46  Identities=13%  Similarity=-0.074  Sum_probs=23.6

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCC-----Cceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRA-----GAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~l~w~   48 (77)
                      +|+|+.|++.|+++..    +.+++++|+.+  |+.+     ++||+|+++..+++.
T Consensus        60 vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~fD~i~~npp~~~~  114 (215)
T 4dzr_A           60 VDLSMDALAVARRNAERFGAVVDWAAADGIE--WLIERAERGRPWHAIVSNPPYIPT  114 (215)
T ss_dssp             EECC-------------------CCHHHHHH--HHHHHHHTTCCBSEEEECCCCCC-
T ss_pred             EECCHHHHHHHHHHHHHhCCceEEEEcchHh--hhhhhhhccCcccEEEECCCCCCC
Confidence            5999999999998753    46788999743  6666     999999998665443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.35  E-value=0.00011  Score=47.16  Aligned_cols=45  Identities=9%  Similarity=-0.020  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|+.|++.|+++..    ..+++++|+ ..+|   ++||.|+++..+++..
T Consensus        78 vD~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~---~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           78 VEVDKEAVDVLIENLGEFKGKFKVFIGDV-SEFN---SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EESCHHHHHHHHHHTGGGTTSEEEEESCG-GGCC---CCCSEEEECCCCSSSS
T ss_pred             EECCHHHHHHHHHHHHHcCCCEEEEECch-HHcC---CCCCEEEEcCCCcccc
Confidence            5999999999998753    468899997 4454   5899999999887763

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.34  E-value=0.00014  Score=47.59  Aligned_cols=44  Identities=5%  Similarity=-0.156  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHhcC-----C-CCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE-----V-EGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+|++|++.|+++.     . +.+++++|+.+.++ ..+.||+|++..++
T Consensus        83 vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~D~v~~~~~~  132 (204)
T 3njr_A           83 IEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLPEAVFIGGGG  132 (204)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCCSEEEECSCC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCCCEEEECCcc
Confidence            599999999998773     2 46889999744244 34579999987643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.34  E-value=7.4e-05  Score=53.45  Aligned_cols=63  Identities=13%  Similarity=0.035  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+| +|++.|+++.    .  ..+++++|+ +.+++. ++||+|+|..+.+++...        ..+..+++.+++.|+
T Consensus        92 vD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~D~Iv~~~~~~~l~~e--------~~~~~~l~~~~~~Lk  160 (376)
T 3r0q_C           92 VEAT-KMADHARALVKANNLDHIVEVIEGSV-EDISLP-EKVDVIISEWMGYFLLRE--------SMFDSVISARDRWLK  160 (376)
T ss_dssp             EESS-TTHHHHHHHHHHTTCTTTEEEEESCG-GGCCCS-SCEEEEEECCCBTTBTTT--------CTHHHHHHHHHHHEE
T ss_pred             EccH-HHHHHHHHHHHHcCCCCeEEEEECch-hhcCcC-CcceEEEEcChhhcccch--------HHHHHHHHHHHhhCC
Confidence            5899 9999998764    1  258999998 567766 899999998766655322        234566777777664

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.33  E-value=7.5e-05  Score=48.25  Aligned_cols=48  Identities=10%  Similarity=0.016  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|++|++.|+++.     .+.+++++|+...+| .+++||.|+++.+++++.
T Consensus       108 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~~  160 (215)
T 2yxe_A          108 IERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTAAGPKIP  160 (215)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESSBBSSCC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECCchHHHH
Confidence            589999999999873     236788899743332 378899999999998763

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.32  E-value=4.1e-05  Score=52.78  Aligned_cols=64  Identities=22%  Similarity=0.188  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHhcC---------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--H
Q psy4109           1 MKKNAFYTNVARDRE---------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--Y   63 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~   63 (77)
                      +|+|++|++.|+++.               +..+++.+|+.+-++. +++||+|++....+|         .+.+.+  +
T Consensus       104 vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~---------~~~~~l~~~  173 (281)
T 1mjf_A          104 VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPV---------GPAKVLFSE  173 (281)
T ss_dssp             EESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC--------------TTSH
T ss_pred             EECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCC---------CcchhhhHH
Confidence            589999999999764               2357888886433444 788999999765322         123444  7


Q ss_pred             HHHHHHHHHHh
Q psy4109          64 KFFSSLFACLW   74 (77)
Q Consensus        64 ~~~~~l~~~L~   74 (77)
                      ++|+.+++.|+
T Consensus       174 ~~l~~~~~~L~  184 (281)
T 1mjf_A          174 EFYRYVYDALN  184 (281)
T ss_dssp             HHHHHHHHHEE
T ss_pred             HHHHHHHHhcC
Confidence            78888888875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.30  E-value=0.00015  Score=50.86  Aligned_cols=64  Identities=14%  Similarity=-0.009  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+| +|++.|+++.      ...+++++|+ +.+|+.+++||+|+|....+.+...        ..+..++..+++.|+
T Consensus        67 vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Ivs~~~~~~l~~~--------~~~~~~l~~~~~~Lk  136 (328)
T 1g6q_1           67 VDMS-SIIEMAKELVELNGFSDKITLLRGKL-EDVHLPFPKVDIIISEWMGYFLLYE--------SMMDTVLYARDHYLV  136 (328)
T ss_dssp             EESS-THHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSSSCEEEEEECCCBTTBSTT--------CCHHHHHHHHHHHEE
T ss_pred             EChH-HHHHHHHHHHHHcCCCCCEEEEECch-hhccCCCCcccEEEEeCchhhcccH--------HHHHHHHHHHHhhcC
Confidence            5899 6999998763      1357899998 5688888999999998654443221        123455666666554

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.28  E-value=0.00035  Score=46.03  Aligned_cols=59  Identities=8%  Similarity=-0.113  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCC----CCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQG----VPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~----lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.   .+..++++|+ ..    +|+. ++||+|+.     ++.++        .....+++++++.|
T Consensus       104 vD~s~~~~~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~~-~~~D~v~~-----~~~~~--------~~~~~~l~~~~~~L  168 (230)
T 1fbn_A          104 IEYAPRIMRELLDACAERENIIPILGDA-NKPQEYANIV-EKVDVIYE-----DVAQP--------NQAEILIKNAKWFL  168 (230)
T ss_dssp             EESCHHHHHHHHHHTTTCTTEEEEECCT-TCGGGGTTTS-CCEEEEEE-----CCCST--------THHHHHHHHHHHHE
T ss_pred             EECCHHHHHHHHHHhhcCCCeEEEECCC-CCcccccccC-ccEEEEEE-----ecCCh--------hHHHHHHHHHHHhC
Confidence            599999999998764   3457889997 45    6766 78999992     22221        23345677777766


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       169 k  169 (230)
T 1fbn_A          169 K  169 (230)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.28  E-value=0.0001  Score=45.79  Aligned_cols=42  Identities=7%  Similarity=-0.015  Sum_probs=34.4

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|+.|++.|+++.     .+.+++++|+.+  ++.+++||.|+++.+
T Consensus        63 vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           63 IDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED--VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             EECSHHHHHHHHHHHHHTTCCSEEEEESCHHH--HGGGCCCSEEEECSC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCcEEEEECCccc--cccCCCCcEEEECCc
Confidence            589999999999874     246789999743  677789999999976

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.27  E-value=7.9e-05  Score=49.68  Aligned_cols=60  Identities=8%  Similarity=0.019  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHhcC-------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+|++|++.|+++.       ...+++++|+.+.+| +.+++||.||+.....              ....+|..+++.
T Consensus        87 vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~--------------~~~~~l~~~~~~  152 (221)
T 3dr5_A           87 IDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPM--------------DLKALVDAAWPL  152 (221)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTT--------------THHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHH--------------HHHHHHHHHHHH
Confidence            599999999998773       135788998755454 3478999999864321              123467777666


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       153 Lk  154 (221)
T 3dr5_A          153 LR  154 (221)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.25  E-value=0.00026  Score=47.51  Aligned_cols=42  Identities=26%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHHhcC--------CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE--------VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--------~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.        .+.+++++|+ ...|+.+++||+|++..
T Consensus       130 vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~-~~~~~~~~~~D~v~~~~  179 (280)
T 1i9g_A          130 YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL-ADSELPDGSVDRAVLDM  179 (280)
T ss_dssp             ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG-GGCCCCTTCEEEEEEES
T ss_pred             EeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch-HhcCCCCCceeEEEECC
Confidence            599999999998773        2467899998 45788889999999853

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.24  E-value=0.00016  Score=51.41  Aligned_cols=60  Identities=12%  Similarity=0.033  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+ |+|++.|+++ ...+++.+|+.+  |++++  |+|++..++|++.+         +...+.+++++++|+.
T Consensus       231 ~D~-~~~~~~a~~~-~~v~~~~~D~~~--~~p~~--D~v~~~~vlh~~~d---------~~~~~~L~~~~~~L~p  290 (364)
T 3p9c_A          231 FDL-PHVISEAPQF-PGVTHVGGDMFK--EVPSG--DTILMKWILHDWSD---------QHCATLLKNCYDALPA  290 (364)
T ss_dssp             EEC-HHHHTTCCCC-TTEEEEECCTTT--CCCCC--SEEEEESCGGGSCH---------HHHHHHHHHHHHHSCT
T ss_pred             ecC-HHHHHhhhhc-CCeEEEeCCcCC--CCCCC--CEEEehHHhccCCH---------HHHHHHHHHHHHHcCC
Confidence            478 8999888765 457899999854  66555  99999999997743         4556788899888863

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.24  E-value=0.00016  Score=51.38  Aligned_cols=59  Identities=12%  Similarity=0.015  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++ ...+++.+|+.+  |++++  |+|++..++|++.+         +...+.+++++++|+
T Consensus       233 ~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~p~~--D~v~~~~vlh~~~~---------~~~~~~l~~~~~~L~  291 (368)
T 3reo_A          233 FDL-PHVIQDAPAF-SGVEHLGGDMFD--GVPKG--DAIFIKWICHDWSD---------EHCLKLLKNCYAALP  291 (368)
T ss_dssp             EEC-HHHHTTCCCC-TTEEEEECCTTT--CCCCC--SEEEEESCGGGBCH---------HHHHHHHHHHHHHSC
T ss_pred             Eeh-HHHHHhhhhc-CCCEEEecCCCC--CCCCC--CEEEEechhhcCCH---------HHHHHHHHHHHHHcC
Confidence            478 8999988765 457899999854  55554  99999999998854         345678888888886

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.22  E-value=0.00043  Score=46.11  Aligned_cols=71  Identities=14%  Similarity=0.082  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHhc------------C-CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHH
Q psy4109           1 MKKNAFYTNVARDR------------E-VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKF   65 (77)
Q Consensus         1 iDiS~~ML~~A~~r------------~-~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~   65 (77)
                      +|+|+.|++.|+++            + .+.+++++|+.+.+|  |.+++||.|+....=-|..........   ..+.+
T Consensus        79 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~---~~~~~  155 (246)
T 2vdv_E           79 MEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARI---ITNTL  155 (246)
T ss_dssp             EESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSC---CCHHH
T ss_pred             EEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhh---ccHHH
Confidence            69999999999764            2 346899999854577  889999999865322222111000000   01467


Q ss_pred             HHHHHHHHh
Q psy4109          66 FSSLFACLW   74 (77)
Q Consensus        66 ~~~l~~~L~   74 (77)
                      +..+++.|+
T Consensus       156 l~~~~~~Lk  164 (246)
T 2vdv_E          156 LSEYAYVLK  164 (246)
T ss_dssp             HHHHHHHEE
T ss_pred             HHHHHHHcC
Confidence            777777765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.19  E-value=0.00012  Score=51.63  Aligned_cols=47  Identities=11%  Similarity=0.077  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|++++|++.|+++.   .+.+++++|+ ..+++.+.+||.|+++..+++-
T Consensus        78 VEid~~li~~a~~~~~~~~~v~vi~gD~-l~~~~~~~~fD~Iv~NlPy~is  127 (295)
T 3gru_A           78 IEIDKSLEPYANKLKELYNNIEIIWGDA-LKVDLNKLDFNKVVANLPYQIS  127 (295)
T ss_dssp             EESCGGGHHHHHHHHHHCSSEEEEESCT-TTSCGGGSCCSEEEEECCGGGH
T ss_pred             EECCHHHHHHHHHHhccCCCeEEEECch-hhCCcccCCccEEEEeCccccc
Confidence            589999999999875   4578999997 5688888899999999876653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.19  E-value=0.00013  Score=47.22  Aligned_cols=61  Identities=8%  Similarity=0.035  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHH----Hhc----C-CCCcEEEccCCCCCCCCCCceeeeeecc---ch--hhhcccCCCCCChHHHHHHHH
Q psy4109           1 MKKNAFYTNVA----RDR----E-VEGDLVLSDLGQGVPFRAGAFDGAISIS---AL--QWLCNADKTSHNPAKRLYKFF   66 (77)
Q Consensus         1 iDiS~~ML~~A----~~r----~-~~~~~~~~D~~~~lPf~~~sFD~v~s~~---~l--~w~~d~~~~~~~p~~~l~~~~   66 (77)
                      +|+|++|++.+    +++    + .+.+++++|+ +.+|+.+++ |.++...   ..  +|+.++           ..++
T Consensus        57 vD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~-~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~-----------~~~l  123 (218)
T 3mq2_A           57 LDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA-ERLPPLSGV-GELHVLMPWGSLLRGVLGSS-----------PEML  123 (218)
T ss_dssp             EESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS-TTCCSCCCE-EEEEEESCCHHHHHHHHTSS-----------SHHH
T ss_pred             EECCHHHHHHHHHHHHHhhhhcCCCceEEEecch-hhCCCCCCC-CEEEEEccchhhhhhhhccH-----------HHHH
Confidence            59999999963    221    1 2468999998 579998877 7777332   22  134332           3577


Q ss_pred             HHHHHHHh
Q psy4109          67 SSLFACLW   74 (77)
Q Consensus        67 ~~l~~~L~   74 (77)
                      +++++.|+
T Consensus       124 ~~~~~~Lk  131 (218)
T 3mq2_A          124 RGMAAVCR  131 (218)
T ss_dssp             HHHHHTEE
T ss_pred             HHHHHHcC
Confidence            77777765

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.19  E-value=5.2e-05  Score=56.67  Aligned_cols=61  Identities=13%  Similarity=0.011  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHhc-----------C---CCCcEEEccCCCCCCCCC--CceeeeeeccchhhhcccCCCCCChHHHHHH
Q psy4109           1 MKKNAFYTNVARDR-----------E---VEGDLVLSDLGQGVPFRA--GAFDGAISISALQWLCNADKTSHNPAKRLYK   64 (77)
Q Consensus         1 iDiS~~ML~~A~~r-----------~---~~~~~~~~D~~~~lPf~~--~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~   64 (77)
                      +|+|++|+++|+++           +   ...++++||+ ..+||.+  +.||+|+++..++|            ..+..
T Consensus       203 IDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~-~~lp~~d~~~~aDVVf~Nn~~F~------------pdl~~  269 (438)
T 3uwp_A          203 VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-LSEEWRERIANTSVIFVNNFAFG------------PEVDH  269 (438)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT-TSHHHHHHHHTCSEEEECCTTCC------------HHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc-cCCccccccCCccEEEEcccccC------------chHHH
Confidence            68999999999763           1   2468999998 5688865  57999999876532            13344


Q ss_pred             HHHHHHHHHh
Q psy4109          65 FFSSLFACLW   74 (77)
Q Consensus        65 ~~~~l~~~L~   74 (77)
                      .|.++++.|+
T Consensus       270 aL~Ei~RvLK  279 (438)
T 3uwp_A          270 QLKERFANMK  279 (438)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHHcCC
Confidence            5566666554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.19  E-value=8.6e-05  Score=48.36  Aligned_cols=46  Identities=7%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHHHhcC-------CCCcEEEccCCCCCCC-CCCc-eeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE-------VEGDLVLSDLGQGVPF-RAGA-FDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-------~~~~~~~~D~~~~lPf-~~~s-FD~v~s~~~l~   46 (77)
                      +|+|++|++.|+++.       .+.+++++|+.+.++. .+++ ||.|+++..++
T Consensus        82 vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~  136 (201)
T 2ift_A           82 LELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH  136 (201)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS
T ss_pred             EECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC
Confidence            599999999999863       2467899997432332 4788 99999987753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.18  E-value=0.00034  Score=46.11  Aligned_cols=41  Identities=15%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CCCCHHHHHHHHhc-----C-CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDR-----E-VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r-----~-~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++     + ...+++++|+. ..|+.+++||+|++.
T Consensus       127 ~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~-~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A          127 YEARPHHLAQAERNVRAFWQVENVRFHLGKLE-EAELEEAAYDGVALD  173 (258)
T ss_dssp             EESCHHHHHHHHHHHHHHCCCCCEEEEESCGG-GCCCCTTCEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHhcCCCCEEEEECchh-hcCCCCCCcCEEEEC
Confidence            58999999999887     3 34678999984 567888999999984

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.18  E-value=0.00012  Score=50.98  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=29.6

Q ss_pred             CCCCHHHHHHHHhcC----------------CCCcEEEccCCCCC-CCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE----------------VEGDLVLSDLGQGV-PFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------------~~~~~~~~D~~~~l-Pf~~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.                .+.+++++|+.+.+ ++.+++||.|++...
T Consensus       136 vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~  196 (336)
T 2b25_A          136 FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML  196 (336)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSS
T ss_pred             EeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCC
Confidence            589999999999863                24688999985433 577889999998753

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.18  E-value=5.7e-05  Score=49.70  Aligned_cols=45  Identities=16%  Similarity=-0.008  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCC--CCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFR--AGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~--~~sFD~v~s~~~l   45 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|..  +++||.|++....
T Consensus        84 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~  136 (233)
T 2gpy_A           84 IERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAK  136 (233)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCH
Confidence            599999999999873    2  3578889975444654  6899999998654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.18  E-value=0.00014  Score=51.90  Aligned_cols=65  Identities=14%  Similarity=0.094  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCC-CCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGV-PFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~l-Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l~~~   72 (77)
                      +||+++|++.|+++..     ..+++++|+.+-+ .+.+++||+|++....++-         ++..|  ++||+.++++
T Consensus       119 VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~---------~~~~L~t~efl~~~~r~  189 (317)
T 3gjy_A          119 VELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAI---------TPQNFTTVEFFEHCHRG  189 (317)
T ss_dssp             EESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSC---------CCGGGSBHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccc---------cchhhhHHHHHHHHHHh
Confidence            5899999999998853     3578999964322 2457899999998644321         11222  6788888888


Q ss_pred             Hh
Q psy4109          73 LW   74 (77)
Q Consensus        73 L~   74 (77)
                      |+
T Consensus       190 Lk  191 (317)
T 3gjy_A          190 LA  191 (317)
T ss_dssp             EE
T ss_pred             cC
Confidence            75

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.18  E-value=9.2e-05  Score=46.20  Aligned_cols=58  Identities=12%  Similarity=-0.036  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCC-CceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRA-GAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|++.|+++.      ...+++++|+.+  ++.+ ++||.|++..+++++              ..+++.+++.|
T Consensus        61 ~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~~~~~~~~~--------------~~~l~~~~~~l  124 (192)
T 1l3i_A           61 IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--ALCKIPDIDIAVVGGSGGEL--------------QEILRIIKDKL  124 (192)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--HHTTSCCEEEEEESCCTTCH--------------HHHHHHHHHTE
T ss_pred             EECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--hcccCCCCCEEEECCchHHH--------------HHHHHHHHHhc
Confidence            589999999998753      245788888743  3333 589999999776432              45666666655


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       125 ~  125 (192)
T 1l3i_A          125 K  125 (192)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.17  E-value=3.4e-05  Score=48.50  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+|++|++.|+++.      ...+++++|+.+.+|..++.||.|+++..++
T Consensus        60 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           60 VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence            599999999998764      1357889997443565667899999987653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.17  E-value=0.00054  Score=45.15  Aligned_cols=59  Identities=14%  Similarity=-0.049  Sum_probs=37.9

Q ss_pred             CCCCHHHH----HHHHhcCCCCcEEEccCCCC---CCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYT----NVARDREVEGDLVLSDLGQG---VPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML----~~A~~r~~~~~~~~~D~~~~---lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++|+    +.|+++ .+..++++|+...   .|+. ++||+|+++..     +     +   ...+.+++++++.|
T Consensus        87 vD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~~-----~-----~---~~~~~~l~~~~r~L  151 (210)
T 1nt2_A           87 VEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDIA-----Q-----K---NQIEILKANAEFFL  151 (210)
T ss_dssp             ECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECCC-----S-----T---THHHHHHHHHHHHE
T ss_pred             EECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEecc-----C-----h---hHHHHHHHHHHHHh
Confidence            59999865    444443 3567788897432   3554 89999999831     1     1   22345677888777


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       152 k  152 (210)
T 1nt2_A          152 K  152 (210)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.17  E-value=0.00023  Score=49.59  Aligned_cols=61  Identities=18%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.    .  ..+++.+|+.+.+|  + .||+|++..++|++.+         ....++++++++.|+
T Consensus       213 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~-~~D~v~~~~vl~~~~~---------~~~~~~l~~~~~~L~  279 (360)
T 1tw3_A          213 LEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP--R-KADAIILSFVLLNWPD---------HDAVRILTRCAEALE  279 (360)
T ss_dssp             EEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--S-CEEEEEEESCGGGSCH---------HHHHHHHHHHHHTEE
T ss_pred             ecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC--C-CccEEEEcccccCCCH---------HHHHHHHHHHHHhcC
Confidence            477 89999998763    1  46889999855444  3 3999999999987743         344568888887765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.13  E-value=0.00014  Score=51.84  Aligned_cols=65  Identities=23%  Similarity=0.198  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKR--LYKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~--l~~~~~~   68 (77)
                      +|+|++|++.|+++.         ...+++++|+.+.++ +.+++||+|++...-.+-         +...  .+++|+.
T Consensus       150 VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~---------~~~~l~~~~~l~~  220 (334)
T 1xj5_A          150 CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIG---------PAKELFEKPFFQS  220 (334)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTS---------GGGGGGSHHHHHH
T ss_pred             EECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccC---------cchhhhHHHHHHH
Confidence            599999999999874         235789999643233 346899999997642221         1112  2678888


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      +++.|+
T Consensus       221 ~~~~Lk  226 (334)
T 1xj5_A          221 VARALR  226 (334)
T ss_dssp             HHHHEE
T ss_pred             HHHhcC
Confidence            888775

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.13  E-value=0.00026  Score=49.65  Aligned_cols=60  Identities=8%  Similarity=0.010  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      +|+ ++|++.|++. ...+++.+|+.+  |++  .||+|++..++|++.|         ....+++++++++|+.
T Consensus       223 ~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~--~~D~v~~~~vlh~~~d---------~~~~~~l~~~~~~L~p  282 (358)
T 1zg3_A          223 FDQ-PQVVGNLTGN-ENLNFVGGDMFK--SIP--SADAVLLKWVLHDWND---------EQSLKILKNSKEAISH  282 (358)
T ss_dssp             EEC-HHHHSSCCCC-SSEEEEECCTTT--CCC--CCSEEEEESCGGGSCH---------HHHHHHHHHHHHHTGG
T ss_pred             ecc-HHHHhhcccC-CCcEEEeCccCC--CCC--CceEEEEcccccCCCH---------HHHHHHHHHHHHhCCC
Confidence            488 7899888753 347889999854  554  3999999999998854         3345788888888864

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.12  E-value=0.00029  Score=48.63  Aligned_cols=45  Identities=11%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.      .+.+++++|+ ..+++.  +||.|+++..++|.
T Consensus        56 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~-~~~~~~--~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           56 CELDPRLVAELHKRVQGTPVASKLQVLVGDV-LKTDLP--FFDTCVANLPYQIS  106 (285)
T ss_dssp             EESCHHHHHHHHHHHTTSTTGGGEEEEESCT-TTSCCC--CCSEEEEECCGGGH
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEEcce-ecccch--hhcEEEEecCcccc
Confidence            599999999999874      2357899997 456654  79999999887775

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.09  E-value=0.00055  Score=44.99  Aligned_cols=43  Identities=14%  Similarity=0.013  Sum_probs=30.8

Q ss_pred             CCCCHHHHH----HHHhcCCCCcEEEccCCCC--CCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTN----VARDREVEGDLVLSDLGQG--VPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~----~A~~r~~~~~~~~~D~~~~--lPf~~~sFD~v~s~~~   44 (77)
                      +|+|++|++    .|+++ .+.+++++|+.+.  +|+.+++||.|++...
T Consensus       108 vD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A          108 VEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             ECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             EECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            599977554    44444 4578899998542  5667889999999654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.09  E-value=0.0004  Score=47.52  Aligned_cols=63  Identities=11%  Similarity=0.013  Sum_probs=42.6

Q ss_pred             CCC-CHHHHHHHHhcC---------------CCCcEEEccCCCCCC-C----CCCceeeeeeccchhhhcccCCCCCChH
Q psy4109           1 MKK-NAFYTNVARDRE---------------VEGDLVLSDLGQGVP-F----RAGAFDGAISISALQWLCNADKTSHNPA   59 (77)
Q Consensus         1 iDi-S~~ML~~A~~r~---------------~~~~~~~~D~~~~lP-f----~~~sFD~v~s~~~l~w~~d~~~~~~~p~   59 (77)
                      +|+ |++|++.|+++.               ...++...|.++... +    .+++||.|+++.++++..+         
T Consensus       108 ~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~---------  178 (281)
T 3bzb_A          108 TDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA---------  178 (281)
T ss_dssp             EECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG---------
T ss_pred             EeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHH---------
Confidence            589 899999998764               134556555543211 2    4688999999888876533         


Q ss_pred             HHHHHHHHHHHHHHh
Q psy4109          60 KRLYKFFSSLFACLW   74 (77)
Q Consensus        60 ~~l~~~~~~l~~~L~   74 (77)
                        +..+++.+++.|+
T Consensus       179 --~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          179 --HDALLRSVKMLLA  191 (281)
T ss_dssp             --HHHHHHHHHHHBC
T ss_pred             --HHHHHHHHHHHhc
Confidence              4567777777765

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.07  E-value=0.00052  Score=45.39  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHhcC-----CC-CcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-----VE-GDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~-~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.     .+ .+++++|+.+  ++.+++||+|++..
T Consensus       124 ~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~D~v~~~~  170 (255)
T 3mb5_A          124 YEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE--GIEEENVDHVILDL  170 (255)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG--CCCCCSEEEEEECS
T ss_pred             EecCHHHHHHHHHHHHHcCCCCceEEEECchhh--ccCCCCcCEEEECC
Confidence            599999999999873     23 6889999853  46788999999853

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.06  E-value=0.0005  Score=47.02  Aligned_cols=42  Identities=12%  Similarity=0.011  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.    .  ..+++++|+. .++. +++||.|+++..
T Consensus       154 vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~-~~~~-~~~fD~Vi~~~p  201 (278)
T 2frn_A          154 IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFPG-ENIADRILMGYV  201 (278)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCCC-CSCEEEEEECCC
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEECCHH-Hhcc-cCCccEEEECCc
Confidence            599999999998763    2  2568999984 5655 889999999643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.04  E-value=0.00018  Score=46.92  Aligned_cols=47  Identities=13%  Similarity=0.063  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCC----CCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVP----FRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lP----f~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.          .+.+++++|+. ..+    +.+++||.|++..+++++
T Consensus       115 vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          115 LERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY-QVNEEEKKELGLFDAIHVGASASEL  175 (227)
T ss_dssp             EESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG-GCCHHHHHHHCCEEEEEECSBBSSC
T ss_pred             EeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH-hcccccCccCCCcCEEEECCchHHH
Confidence            589999999998873          24678999974 344    567889999999888654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.03  E-value=0.00059  Score=46.72  Aligned_cols=61  Identities=10%  Similarity=-0.189  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCC--CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQ--GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~--~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.++++.   .+...+.+|...  ..|+..+++|+|++....+|-             -..++.++++.|+
T Consensus       108 vD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~-------------~~~~l~~~~r~LK  173 (233)
T 4df3_A          108 VEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQ-------------AAIVVRNARFFLR  173 (233)
T ss_dssp             EECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTTH-------------HHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccCChh-------------HHHHHHHHHHhcc
Confidence            599999999998775   345678888753  346788999999986543321             1346677776664

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.01  E-value=0.00027  Score=46.31  Aligned_cols=46  Identities=9%  Similarity=-0.026  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCC-Cceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRA-GAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.          .+.+++++|..+  ++.+ ++||.|++..+++++
T Consensus       120 vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          120 IEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK--GYPPNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             EESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--CCGGGCSEEEEEECSCBSSC
T ss_pred             EEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc--CCCcCCCccEEEECCchHHH
Confidence            589999999998763          246789999754  4444 889999999988765

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.98  E-value=0.00016  Score=48.53  Aligned_cols=43  Identities=23%  Similarity=0.122  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCC--Cceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRA--GAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~--~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|..+  ++||.|++..
T Consensus        94 vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~  144 (248)
T 3tfw_A           94 LEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA  144 (248)
T ss_dssp             EECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence            599999999999873    1  35789999754355443  4999999865

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.95  E-value=0.0013  Score=47.69  Aligned_cols=66  Identities=12%  Similarity=0.011  Sum_probs=47.3

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    .  ..+++++|+ ..++.. ++||.|+++.=+.       ..-...+.+..+++.+.+.|+
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~-~~l~~~-~~fD~Iv~NPPYG-------~rl~~~~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRL-QDFKTN-KINGVLISNPPYG-------ERLLDDKAVDILYNEMGETFA  332 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCG-GGCCCC-CCSCEEEECCCCT-------TTTSCHHHHHHHHHHHHHHHT
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECCh-HHCCcc-CCcCEEEECCchh-------hccCCHHHHHHHHHHHHHHHh
Confidence            599999999999874    2  257899998 457754 5899999995331       111234677788888888776


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       333 ~  333 (384)
T 3ldg_A          333 P  333 (384)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.94  E-value=0.00063  Score=45.15  Aligned_cols=48  Identities=8%  Similarity=-0.029  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCC-C-CCC---CCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQG-V-PFR---AGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~-l-Pf~---~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+. + ++.   +++||.|+|+..+++.
T Consensus        95 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A           95 TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred             EECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccC
Confidence            599999999999774    1  257899996431 1 444   3789999999776654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.92  E-value=0.00094  Score=43.50  Aligned_cols=61  Identities=8%  Similarity=-0.162  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCC--CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.++++.   .+.+++++|+.+..  +..+++||.|++....             +...+.++.++++.|+
T Consensus       104 vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~-------------~~~~~~~l~~~~~~Lk  169 (227)
T 1g8a_A          104 IEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ-------------PTQAKILIDNAEVYLK  169 (227)
T ss_dssp             EESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS-------------TTHHHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCCC-------------HhHHHHHHHHHHHhcC
Confidence            589999999887654   35688999985421  2235689999987541             1122345777777664

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.91  E-value=0.0012  Score=47.89  Aligned_cols=66  Identities=3%  Similarity=0.008  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    .  ..+++++|+ ..+|.. ++||+|+++.=+.       ..-...+.+..++..|.+.|+
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~-~~~~~~-~~fD~Iv~NPPYg-------~rl~~~~~l~~ly~~lg~~lk  339 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQV-ADFQTE-DEYGVVVANPPYG-------ERLEDEEAVRQLYREMGIVYK  339 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCG-GGCCCC-CCSCEEEECCCCC-------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECCh-HhCCCC-CCCCEEEECCCCc-------cccCCchhHHHHHHHHHHHHh
Confidence            599999999999874    2  267999998 457754 5899999995321       001123567777777777776


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       340 ~  340 (393)
T 3k0b_A          340 R  340 (393)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.87  E-value=0.00054  Score=44.56  Aligned_cols=47  Identities=11%  Similarity=-0.060  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|+.|++.|+++.          .+.+++++|+. ..+..+++||.|++..+++.+
T Consensus       108 vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          108 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR-MGYAEEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG-GCCGGGCCEEEEEECSBBSSC
T ss_pred             EeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc-cCcccCCCcCEEEECCchHHH
Confidence            589999999998763          14578999974 455567889999999877543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.86  E-value=0.0006  Score=47.37  Aligned_cols=45  Identities=11%  Similarity=0.046  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.     .+.+++++|+ ..+|+  ++||.|+++...+|.
T Consensus        70 vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~-~~~~~--~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           70 IDIDSRMISEVKKRCLYEGYNNLEVYEGDA-IKTVF--PKFDVCTANIPYKIS  119 (299)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEC----C-CSSCC--CCCSEEEEECCGGGH
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEECch-hhCCc--ccCCEEEEcCCcccc
Confidence            599999999998763     2467899997 45665  489999999887765

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.85  E-value=0.0006  Score=43.58  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.     .+.+++++|+. .++ .+++||.|+++.
T Consensus        95 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           95 LDSLGKRVRFLRQVQHELKLENIEPVQSRVE-EFP-SEPPFDGVISRA  140 (207)
T ss_dssp             EESCHHHHHHHHHHHHHTTCSSEEEEECCTT-TSC-CCSCEEEEECSC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCeEEEecchh-hCC-ccCCcCEEEEec
Confidence            589999999998763     23678999974 454 568899999874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.84  E-value=0.00027  Score=47.70  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    ...+++++|+.+  ++.+++||.|+++...++              +..++..+++.|+
T Consensus       148 vDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~--~~~~~~fD~Vv~n~~~~~--------------~~~~l~~~~~~Lk  209 (254)
T 2nxc_A          148 VDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLYAEL--------------HAALAPRYREALV  209 (254)
T ss_dssp             EESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECCHHH--------------HHHHHHHHHHHEE
T ss_pred             EECCHHHHHHHHHHHHHcCCcEEEEECChhh--cCcCCCCCEEEECCcHHH--------------HHHHHHHHHHHcC
Confidence            599999999998863    226788888743  355789999999865543              4567777777664

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.81  E-value=0.0011  Score=46.29  Aligned_cols=41  Identities=12%  Similarity=-0.099  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|+.|++.|+++.     .+.+++++|+ ..++..+++||.|++.
T Consensus       149 vD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          149 FDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLD  194 (315)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEE
T ss_pred             EcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEe
Confidence            599999999998873     2468899997 4566567889999984

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.79  E-value=0.00024  Score=46.45  Aligned_cols=48  Identities=8%  Similarity=-0.017  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCC-----Cceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRA-----GAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~l~w~   48 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|..+     ++||.|++....++.
T Consensus        89 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A           89 MEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGH
T ss_pred             EeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccc
Confidence            599999999999863    1  36889999744455433     799999998766554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.77  E-value=0.00017  Score=46.83  Aligned_cols=60  Identities=12%  Similarity=-0.005  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCC-----CceeeeeeccchhhhcccCCCCCChHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRA-----GAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l   69 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|..+     ++||.|++...              ......+|+.+
T Consensus        95 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~--------------~~~~~~~l~~~  160 (225)
T 3tr6_A           95 CDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD--------------KANTDLYYEES  160 (225)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC--------------GGGHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC--------------HHHHHHHHHHH
Confidence            599999999998774    1  25789999744444322     89999996642              12234567777


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       161 ~~~L~  165 (225)
T 3tr6_A          161 LKLLR  165 (225)
T ss_dssp             HHHEE
T ss_pred             HHhcC
Confidence            76664

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.76  E-value=0.00022  Score=44.70  Aligned_cols=46  Identities=13%  Similarity=0.024  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCC---CCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGV---PFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~l---Pf~~~sFD~v~s~~~l~   46 (77)
                      +|+|++|++.|+++.      ...+++++|+.+.+   |+.+++||.|+++..++
T Consensus        73 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~  127 (187)
T 2fhp_A           73 IEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA  127 (187)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred             EECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence            599999999998774      23678999974322   23478999999997754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.76  E-value=0.0005  Score=45.32  Aligned_cols=47  Identities=13%  Similarity=0.119  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCC-ceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAG-AFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~-sFD~v~s~~~l~w~~   49 (77)
                      +|+|++|++.|+++.     .+.+++.+|.  ..++.++ .||.|++..+++++.
T Consensus       120 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~Ii~~~~~~~~~  172 (235)
T 1jg1_A          120 IERIPELVEFAKRNLERAGVKNVHVILGDG--SKGFPPKAPYDVIIVTAGAPKIP  172 (235)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCCGGGCCEEEEEECSBBSSCC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEECCc--ccCCCCCCCccEEEECCcHHHHH
Confidence            589999999999874     2357888996  2455554 499999999887763

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.75  E-value=0.00044  Score=47.74  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCce---eeeeeccchhhhcc---cCCCCCChHHHHH-----
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAF---DGAISISALQWLCN---ADKTSHNPAKRLY-----   63 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sF---D~v~s~~~l~w~~d---~~~~~~~p~~~l~-----   63 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+  ++. ++|   |.|+|+.-.....+   ++-. +.|...|.     
T Consensus       152 vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~--~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dg  227 (284)
T 1nv8_A          152 TDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE--PFK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDG  227 (284)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG--GGG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECcchh--hcc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcH
Confidence            599999999999873    2  26889999854  332 579   99999842221111   1112 55655553     


Q ss_pred             -HHHHHHH-HHH
Q psy4109          64 -KFFSSLF-ACL   73 (77)
Q Consensus        64 -~~~~~l~-~~L   73 (77)
                       .++.++. +.|
T Consensus       228 l~~~~~i~~~~l  239 (284)
T 1nv8_A          228 LDFYREFFGRYD  239 (284)
T ss_dssp             CHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence             5666666 544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.75  E-value=0.00042  Score=48.90  Aligned_cols=46  Identities=13%  Similarity=-0.013  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|+ |++.|+++.      ...+++++|+ +.+++. ++||.|+|..+++++.
T Consensus        79 vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~-~~~D~Ivs~~~~~~~~  130 (348)
T 2y1w_A           79 VEAST-MAQHAEVLVKSNNLTDRIVVIPGKV-EEVSLP-EQVDIIISEPMGYMLF  130 (348)
T ss_dssp             EECST-HHHHHHHHHHHTTCTTTEEEEESCT-TTCCCS-SCEEEEEECCCBTTBT
T ss_pred             ECCHH-HHHHHHHHHHHcCCCCcEEEEEcch-hhCCCC-CceeEEEEeCchhcCC
Confidence            58895 999988762      2368899998 557654 6799999998766553

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.74  E-value=0.0018  Score=42.36  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.      ...+++.+|+.+ ..+.+++||+|++.
T Consensus       119 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~  165 (248)
T 2yvl_A          119 FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD-AEVPEGIFHAAFVD  165 (248)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT-SCCCTTCBSEEEEC
T ss_pred             EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh-cccCCCcccEEEEC
Confidence            599999999999874      245788899754 33367789999985

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.69  E-value=0.00014  Score=48.75  Aligned_cols=44  Identities=9%  Similarity=-0.096  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCC--CCCCC-Cceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQG--VPFRA-GAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~--lPf~~-~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+....+.+++++|+.+.  +|+.+ ++||.|++..+
T Consensus       115 vD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~  161 (236)
T 2bm8_A          115 IDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  161 (236)
T ss_dssp             EESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             EeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence            5899999999985444578999997532  46544 47999998654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.68  E-value=0.007  Score=44.23  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=26.2

Q ss_pred             cEEEccCCC--CCCCCCCceeeeeeccchhhhccc
Q psy4109          19 DLVLSDLGQ--GVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus        19 ~~~~~D~~~--~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      -++.|..+.  .-.|++++||.|+|+++|||+.+.
T Consensus       131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~  165 (384)
T 2efj_A          131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV  165 (384)
T ss_dssp             EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred             eEEEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence            466666543  356889999999999999999774

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.66  E-value=0.00021  Score=46.20  Aligned_cols=42  Identities=12%  Similarity=-0.105  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++..      ..+++++|+.+.+|..++ ||.|++..
T Consensus        87 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           87 IDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             EESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             EECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            5899999999987631      357899997444566667 99999873

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.63  E-value=0.0019  Score=46.55  Aligned_cols=66  Identities=11%  Similarity=0.069  Sum_probs=46.8

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    .  ..++.++|+. .++. +++||+|+++.-+.  .     --...+.+..+|+.+.+.|+
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~-~l~~-~~~~D~Iv~NPPyg--~-----rl~~~~~l~~ly~~lg~~lk  333 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDAT-QFKS-EDEFGFIITNPPYG--E-----RLEDKDSVKQLYKELGYAFR  333 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGG-GCCC-SCBSCEEEECCCCC--C-----SHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChh-hcCc-CCCCcEEEECCCCc--C-----ccCCHHHHHHHHHHHHHHHh
Confidence            599999999999874    2  3578999984 5665 46899999986431  0     01123567778888777776


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       334 ~  334 (385)
T 3ldu_A          334 K  334 (385)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.60  E-value=0.0005  Score=46.58  Aligned_cols=43  Identities=5%  Similarity=-0.018  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCC---CCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFR---AGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~---~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.++..   +++||+|+|..+
T Consensus       110 vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~-~~~~~~~~~~~~fD~I~s~a~  160 (249)
T 3g89_A          110 VDATRKKVAFVERAIEVLGLKGARALWGRA-EVLAREAGHREAYARAVARAV  160 (249)
T ss_dssp             EESCHHHHHHHHHHHHHHTCSSEEEEECCH-HHHTTSTTTTTCEEEEEEESS
T ss_pred             EECCHHHHHHHHHHHHHhCCCceEEEECcH-HHhhcccccCCCceEEEECCc
Confidence            599999999998763     2468899997 556653   589999999754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.59  E-value=8.7e-05  Score=45.85  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCC---CCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFR---AGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~---~~sFD~v~s~~~l~   46 (77)
                      +|+|++|++.|+++..    +.+++++|+.+.+|..   +++||.|+++..++
T Consensus        69 vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A           69 VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             EeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence            5999999999998642    5688999974323321   34899999998765

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.58  E-value=0.0016  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             CCCCCCceeeeeeccchhhhccc
Q psy4109          29 VPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus        29 lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      -.|++++||.|+|+++|||+.+.
T Consensus       144 rlfP~~S~d~v~Ss~aLHWls~~  166 (374)
T 3b5i_A          144 RLFPARTIDFFHSAFSLHWLSQV  166 (374)
T ss_dssp             CCSCTTCEEEEEEESCTTBCSSC
T ss_pred             ccCCCcceEEEEecceeeeeccC
Confidence            34789999999999999999753

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.58  E-value=0.00035  Score=44.51  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=34.3

Q ss_pred             CCcEEEccCCCCCC-------------------------CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109          17 EGDLVLSDLGQGVP-------------------------FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus        17 ~~~~~~~D~~~~lP-------------------------f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +.+++++|+. .++                         +.+++||.|+|+++++|............+.+...++.+++
T Consensus        64 ~v~~~~~d~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~  142 (201)
T 2plw_A           64 NVYFIQGEIG-KDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQ  142 (201)
T ss_dssp             TCEEEECCTT-TTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEcccc-chhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence            4678899974 565                         57789999999998887411000000001223456777777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       143 ~Lk  145 (201)
T 2plw_A          143 YIN  145 (201)
T ss_dssp             HEE
T ss_pred             Hcc
Confidence            664

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.57  E-value=0.0001  Score=51.16  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHhcC-C------CCcEE--EccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-V------EGDLV--LSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-~------~~~~~--~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|+ |+..|+++. .      +..++  ++|+ ..+|  +++||+|+|..+ ++..++.   ....+.++ .+..+++
T Consensus       109 VD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~-~~l~--~~~fD~Vvsd~~-~~~~~~~---~d~~~~l~-~L~~~~r  179 (276)
T 2wa2_A          109 VKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV-TKME--PFQADTVLCDIG-ESNPTAA---VEASRTLT-VLNVISR  179 (276)
T ss_dssp             EEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG-GGCC--CCCCSEEEECCC-CCCSCHH---HHHHHHHH-HHHHHHH
T ss_pred             EECch-hhhhhhhchhhhhhcCCCeEEEeccCcH-hhCC--CCCcCEEEECCC-cCCCchh---hhHHHHHH-HHHHHHH
Confidence            58888 765554432 1      35778  8998 4566  789999999876 4432210   00111122 6777777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      +|+
T Consensus       180 ~Lk  182 (276)
T 2wa2_A          180 WLE  182 (276)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            775

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.57  E-value=0.0012  Score=49.02  Aligned_cols=45  Identities=13%  Similarity=-0.008  Sum_probs=34.4

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|+ |++.|+++.      ...+++++|+ ..+++. +.||+|+|+.+++++
T Consensus       187 vD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~-~~~~~~-~~fD~Ivs~~~~~~~  237 (480)
T 3b3j_A          187 VEAST-MAQHAEVLVKSNNLTDRIVVIPGKV-EEVSLP-EQVDIIISEPMGYML  237 (480)
T ss_dssp             EECHH-HHHHHHHHHHHTTCTTTEEEEESCT-TTCCCS-SCEEEEECCCCHHHH
T ss_pred             EEcHH-HHHHHHHHHHHcCCCCcEEEEECch-hhCccC-CCeEEEEEeCchHhc
Confidence            58998 999998762      2368999998 456654 689999999876555

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.45  E-value=0.0008  Score=44.43  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCC--------------CCC--CceeeeeeccchhhhcccCCCCCCh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVP--------------FRA--GAFDGAISISALQWLCNADKTSHNP   58 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lP--------------f~~--~sFD~v~s~~~l~w~~d~~~~~~~p   58 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|              |.+  ++||+|++.....            
T Consensus        91 vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~------------  158 (239)
T 2hnk_A           91 CDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE------------  158 (239)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG------------
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH------------
Confidence            589999999999873    1  25788888643233              233  8899999885321            


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy4109          59 AKRLYKFFSSLFACLW   74 (77)
Q Consensus        59 ~~~l~~~~~~l~~~L~   74 (77)
                        .+..+|+.+++.|+
T Consensus       159 --~~~~~l~~~~~~L~  172 (239)
T 2hnk_A          159 --NYPNYYPLILKLLK  172 (239)
T ss_dssp             --GHHHHHHHHHHHEE
T ss_pred             --HHHHHHHHHHHHcC
Confidence              22356666666654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.44  E-value=0.0022  Score=43.35  Aligned_cols=40  Identities=15%  Similarity=0.084  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.      .+.+++++|+.+  ++.+++||.|++.
T Consensus       141 vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~--~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          141 VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD--FISDQMYDAVIAD  186 (275)
T ss_dssp             ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT--CCCSCCEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCcEEEEECchhc--cCcCCCccEEEEc
Confidence            599999999998773      246789999854  6678899999983

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=96.42  E-value=0.0017  Score=47.27  Aligned_cols=42  Identities=10%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCC---CCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQG---VPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~---lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+.   +|+.+++||.|+++
T Consensus       314 vD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            599999999998764     2468999998543   45677899999985

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.41  E-value=0.0021  Score=43.32  Aligned_cols=40  Identities=13%  Similarity=0.155  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.      .+.+++++|+.+ . +.+++||+|++.
T Consensus       143 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~D~V~~~  188 (277)
T 1o54_A          143 YEKREEFAKLAESNLTKWGLIERVTIKVRDISE-G-FDEKDVDALFLD  188 (277)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-C-CSCCSEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH-c-ccCCccCEEEEC
Confidence            599999999999873      245788899754 3 667899999985

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.36  E-value=0.0013  Score=44.94  Aligned_cols=42  Identities=17%  Similarity=0.029  Sum_probs=33.1

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.     .+..++++|+.+ +|. +++||.|++...
T Consensus       149 vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~-~~~-~~~~D~Vi~d~p  195 (272)
T 3a27_A          149 IEKNPTAYHYLCENIKLNKLNNVIPILADNRD-VEL-KDVADRVIMGYV  195 (272)
T ss_dssp             EECCHHHHHHHHHHHHHTTCSSEEEEESCGGG-CCC-TTCEEEEEECCC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCEEEEECChHH-cCc-cCCceEEEECCc
Confidence            589999999998763     245789999854 465 778999998864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.31  E-value=0.0017  Score=45.35  Aligned_cols=44  Identities=14%  Similarity=0.064  Sum_probs=34.3

Q ss_pred             CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          18 GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+++.+|+.+++|    +||+|++..++|++.|         ....+++++++++|+
T Consensus       234 v~~~~~d~~~~~p----~~D~v~~~~vlh~~~d---------~~~~~~L~~~~~~Lk  277 (348)
T 3lst_A          234 WKVVEGDFLREVP----HADVHVLKRILHNWGD---------EDSVRILTNCRRVMP  277 (348)
T ss_dssp             EEEEECCTTTCCC----CCSEEEEESCGGGSCH---------HHHHHHHHHHHHTCC
T ss_pred             eEEEecCCCCCCC----CCcEEEEehhccCCCH---------HHHHHHHHHHHHhcC
Confidence            5889999854444    8999999999998754         345678888888875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.31  E-value=0.00031  Score=45.64  Aligned_cols=44  Identities=9%  Similarity=0.009  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC-C---CCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF-R---AGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf-~---~~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|. .   .++||.|++...
T Consensus        89 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~  142 (223)
T 3duw_A           89 LEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD  142 (223)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC
Confidence            589999999998763    1  257899997443332 1   267999998754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.29  E-value=0.00025  Score=48.88  Aligned_cols=65  Identities=6%  Similarity=-0.048  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHhcC-C------CCcEE--EccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-V------EGDLV--LSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-~------~~~~~--~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|+ |+..|+++. .      +..++  ++|+ ..+|  +++||+|+|..+ ++..++.   -...+.++ .+..+++
T Consensus       101 vD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~-~~l~--~~~fD~V~sd~~-~~~~~~~---~d~~~~l~-~L~~~~r  171 (265)
T 2oxt_A          101 VRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDI-HTLP--VERTDVIMCDVG-ESSPKWS---VESERTIK-ILELLEK  171 (265)
T ss_dssp             EEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCT-TTSC--CCCCSEEEECCC-CCCSCHH---HHHHHHHH-HHHHHHH
T ss_pred             EECch-hhhhhhhhhhhhhccCCCeEEEecccCH-hHCC--CCCCcEEEEeCc-ccCCccc---hhHHHHHH-HHHHHHH
Confidence            57887 754443332 1      35778  8998 4566  789999999876 4432210   00111122 6777777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      +|+
T Consensus       172 ~Lk  174 (265)
T 2oxt_A          172 WKV  174 (265)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            775

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.25  E-value=0.0015  Score=50.66  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC--CCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD--KTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~--~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|+.|++.|+++.    .   ..+++++|+.+.++..+++||.|++..-.  +....  .......+..++++..+++
T Consensus       568 VD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~--f~~~~~~~~~~~~~~~~~~ll~~a~~  645 (703)
T 3v97_A          568 VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT--FSNSKRMEDAFDVQRDHLALMKDLKR  645 (703)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS--BC-------CCBHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc--ccCCccchhHHHHHHHHHHHHHHHHH
Confidence            599999999999873    2   35789999754466667899999987521  11100  0123445677778887777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       646 ~Lk  648 (703)
T 3v97_A          646 LLR  648 (703)
T ss_dssp             HEE
T ss_pred             hcC
Confidence            764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.24  E-value=0.00042  Score=46.74  Aligned_cols=43  Identities=14%  Similarity=-0.070  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCC------CCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFR------AGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~------~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|..      +++||.|++..
T Consensus       110 iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~  164 (247)
T 1sui_A          110 MDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA  164 (247)
T ss_dssp             EESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcC
Confidence            589999999999763    1  3578999974444532      68999999864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.16  E-value=0.0018  Score=44.37  Aligned_cols=39  Identities=5%  Similarity=-0.193  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|++++|++.|+++..         ..+++.+|+. ..+   ++||+|++..
T Consensus       100 veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~-~~~---~~fD~Ii~d~  147 (262)
T 2cmg_A          100 VQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD-LDI---KKYDLIFCLQ  147 (262)
T ss_dssp             ECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGG-SCC---CCEEEEEESS
T ss_pred             EECCHHHHHHHHHHHHhhccccCCCeEEEEechHH-HHH---hhCCEEEECC
Confidence            5999999999987642         3578888863 343   8899999873

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.14  E-value=0.004  Score=45.11  Aligned_cols=56  Identities=14%  Similarity=0.092  Sum_probs=38.3

Q ss_pred             cEEEccCCC--CCCCCCCceeeeeeccchhhhcccCCCC--------------CCh--------HHHHHHHHHHHHHHHh
Q psy4109          19 DLVLSDLGQ--GVPFRAGAFDGAISISALQWLCNADKTS--------------HNP--------AKRLYKFFSSLFACLW   74 (77)
Q Consensus        19 ~~~~~D~~~--~lPf~~~sFD~v~s~~~l~w~~d~~~~~--------------~~p--------~~~l~~~~~~l~~~L~   74 (77)
                      -++.|..+.  .-.|++++||.++|++++||+.+.....              +.+        .+.+..||+..++.|+
T Consensus       121 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~  200 (359)
T 1m6e_X          121 CFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV  200 (359)
T ss_dssp             EEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred             EEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355565442  3678999999999999999997743211              111        4567777887777765

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.08  E-value=0.0027  Score=44.57  Aligned_cols=56  Identities=14%  Similarity=0.000  Sum_probs=33.2

Q ss_pred             CCcE-EEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          17 EGDL-VLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        17 ~~~~-~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +.++ +++|+ ..+|+. ++||+|+|+.+.+|.............-+++.++.+++.|+
T Consensus       106 ~v~~~i~gD~-~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk  162 (290)
T 2xyq_A          106 DADSTLIGDC-ATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA  162 (290)
T ss_dssp             SSSEEEESCG-GGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE
T ss_pred             CCEEEEECcc-ccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcC
Confidence            4678 99998 456664 78999999865444211111111112334567777777775

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=96.06  E-value=0.00072  Score=45.06  Aligned_cols=42  Identities=10%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             CCCC-HHHHHHH---HhcC-----CCCcEEEccCCCCCCCC-CCceeeeeecc
Q psy4109           1 MKKN-AFYTNVA---RDRE-----VEGDLVLSDLGQGVPFR-AGAFDGAISIS   43 (77)
Q Consensus         1 iDiS-~~ML~~A---~~r~-----~~~~~~~~D~~~~lPf~-~~sFD~v~s~~   43 (77)
                      +|+| +.|+++|   +++.     .+.+++++|+ +.+|.. .+.+|.++++.
T Consensus        54 vD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~-~~l~~~~~d~v~~i~~~~  105 (225)
T 3p2e_A           54 IDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA-ESLPFELKNIADSISILF  105 (225)
T ss_dssp             ECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBT-TBCCGGGTTCEEEEEEES
T ss_pred             EeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCH-HHhhhhccCeEEEEEEeC
Confidence            6999 8888887   5542     3468899997 567642 25566666654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=95.98  E-value=0.00092  Score=47.16  Aligned_cols=59  Identities=10%  Similarity=-0.081  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHHhcCCCCcEE-EccCCCCCC---CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLV-LSDLGQGVP---FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~-~~D~~~~lP---f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.+.++.+....+ ..|+ ..++   +...+||.+++..+++++              ...|.++++.|+
T Consensus       114 VDvs~~mL~~a~r~~~rv~~~~~~ni-~~l~~~~l~~~~fD~v~~d~sf~sl--------------~~vL~e~~rvLk  176 (291)
T 3hp7_A          114 VDVGTNQLVWKLRQDDRVRSMEQYNF-RYAEPVDFTEGLPSFASIDVSFISL--------------NLILPALAKILV  176 (291)
T ss_dssp             ECSSSSCSCHHHHTCTTEEEECSCCG-GGCCGGGCTTCCCSEEEECCSSSCG--------------GGTHHHHHHHSC
T ss_pred             EECCHHHHHHHHHhCcccceecccCc-eecchhhCCCCCCCEEEEEeeHhhH--------------HHHHHHHHHHcC
Confidence            699999999965543222111 1222 1122   234569999999888765              346777777765

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=95.97  E-value=0.0004  Score=46.81  Aligned_cols=54  Identities=7%  Similarity=-0.069  Sum_probs=34.4

Q ss_pred             CCCCHHHHHHHHhcCCC--------CcEEE-ccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREVE--------GDLVL-SDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~--------~~~~~-~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +|+|++||+.|+++...        ..++. .|+ ...++...+||.++++.                   ..+|.++++
T Consensus        66 vDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~D~v~~~l-------------------~~~l~~i~r  125 (232)
T 3opn_A           66 LDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADF-EQGRPSFTSIDVSFISL-------------------DLILPPLYE  125 (232)
T ss_dssp             ECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGC-CSCCCSEEEECCSSSCG-------------------GGTHHHHHH
T ss_pred             EcCCHHHHHHHHHhCccccccccceEEEeCHhHc-CcCCCCEEEEEEEhhhH-------------------HHHHHHHHH
Confidence            69999999998876532        23333 343 22234567888887763                   236777777


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      .|+
T Consensus       126 vLk  128 (232)
T 3opn_A          126 ILE  128 (232)
T ss_dssp             HSC
T ss_pred             hcc
Confidence            765

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.96  E-value=0.0014  Score=47.57  Aligned_cols=43  Identities=12%  Similarity=0.033  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.    ...++.++|+.+.++..++.||.|++..
T Consensus       242 vDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dp  288 (393)
T 4dmg_A          242 VDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDP  288 (393)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECC
T ss_pred             EECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECC
Confidence            599999999998774    3346788887443333345599999874

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.95  E-value=0.018  Score=39.11  Aligned_cols=44  Identities=16%  Similarity=-0.111  Sum_probs=30.4

Q ss_pred             CCCCHHHH----HHHHhcCCCCcEEEccCCCCCC--CCCCceeeeeeccch
Q psy4109           1 MKKNAFYT----NVARDREVEGDLVLSDLGQGVP--FRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML----~~A~~r~~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l   45 (77)
                      +|+|+.|+    +.|+++ .+..++++|+..+.+  ...++||.|++..+.
T Consensus       107 vD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          107 VEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             EECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC
T ss_pred             EECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEecCCC
Confidence            58999885    445554 467889999754221  125789999998653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=95.90  E-value=0.00012  Score=49.31  Aligned_cols=60  Identities=12%  Similarity=-0.034  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCC-----CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFR-----AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~-----~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l   69 (77)
                      +|+|++|++.|+++.      ...+++++|+.+.+|..     +++||.|++....              .....+|+.+
T Consensus        91 iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~--------------~~~~~~l~~~  156 (242)
T 3r3h_A           91 CDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK--------------TNYLNYYELA  156 (242)
T ss_dssp             EECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG--------------GGHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh--------------HHhHHHHHHH
Confidence            589999999888763      14688999975444432     5899999987431              1223467777


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      ++.|+
T Consensus       157 ~~~Lk  161 (242)
T 3r3h_A          157 LKLVT  161 (242)
T ss_dssp             HHHEE
T ss_pred             HHhcC
Confidence            66654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.90  E-value=0.0075  Score=43.99  Aligned_cols=40  Identities=10%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCC--CCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVP--FRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lP--f~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.    . +..++++|+. .++  +.+++||.|++
T Consensus       290 ~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~-~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          290 FDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR-KAPEIIGEEVADKVLL  336 (450)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEECSCTT-CCSSSSCSSCEEEEEE
T ss_pred             EcCCHHHHHHHHHHHHHcCCCcEEEEEcChh-hcchhhccCCCCEEEE
Confidence            599999999998772    2 4678999974 565  66689999996

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.75  E-value=0.0097  Score=41.57  Aligned_cols=47  Identities=13%  Similarity=0.017  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+++.|++.|+.+.    ....++++|...  +..++.||.|+++.-++|+.
T Consensus       165 iDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~--~~~~~~fD~Ii~NPPfg~~~  215 (344)
T 2f8l_A          165 VDVDDLLISLALVGADLQRQKMTLLHQDGLA--NLLVDPVDVVISDLPVGYYP  215 (344)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCCEEEESCTTS--CCCCCCEEEEEEECCCSEES
T ss_pred             EECCHHHHHHHHHHHHhCCCCceEEECCCCC--ccccCCccEEEECCCCCCcC
Confidence            589999999998763    356899999744  44578899999999887764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=95.73  E-value=0.024  Score=39.91  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=43.9

Q ss_pred             HHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           5 AFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         5 ~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      |+|++.|+++..     +.+++.+|+- ..|+.  .+|+++...++|.+.|         +...+.+++++++|+
T Consensus       212 p~v~~~a~~~~~~~~~~rv~~~~gD~~-~~~~~--~~D~~~~~~vlh~~~d---------~~~~~iL~~~~~al~  274 (353)
T 4a6d_A          212 PEVVWTAKQHFSFQEEEQIDFQEGDFF-KDPLP--EADLYILARVLHDWAD---------GKCSHLLERIYHTCK  274 (353)
T ss_dssp             HHHHHHHHHHSCC--CCSEEEEESCTT-TSCCC--CCSEEEEESSGGGSCH---------HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhhhcccCceeeecCccc-cCCCC--CceEEEeeeecccCCH---------HHHHHHHHHHHhhCC
Confidence            889999987742     3588999984 34543  4799999999998754         345668888888875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.72  E-value=0.0055  Score=41.97  Aligned_cols=41  Identities=5%  Similarity=0.018  Sum_probs=32.6

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCC----Cceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRA----GAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~----~sFD~v~s~~   43 (77)
                      +|++++|++.++++.   .+.+++++|+ ..+|+.+    +.|| |++|.
T Consensus        57 vEid~~~~~~~~~~~~~~~~v~~i~~D~-~~~~~~~~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           57 VEIDRDLVAFLQKKYNQQKNITIYQNDA-LQFDFSSVKTDKPLR-VVGNL  104 (255)
T ss_dssp             EECCHHHHHHHHHHHTTCTTEEEEESCT-TTCCGGGSCCSSCEE-EEEEC
T ss_pred             EECCHHHHHHHHHHHhhCCCcEEEEcch-HhCCHHHhccCCCeE-EEecC
Confidence            589999999999875   3468999997 5677653    5788 88885

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.71  E-value=0.01  Score=45.93  Aligned_cols=67  Identities=15%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCC--CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~   72 (77)
                      +|+++.|++.|+++.    .  ..++.++|+. .+  |+.+++||.|++|.=+.       .-....+.+..+++.+.+.
T Consensus       262 ~Did~~av~~A~~N~~~agv~~~i~~~~~D~~-~~~~~~~~~~~d~Iv~NPPYG-------~Rlg~~~~l~~ly~~l~~~  333 (703)
T 3v97_A          262 SDSDARVIQRARTNARLAGIGELITFEVKDVA-QLTNPLPKGPYGTVLSNPPYG-------ERLDSEPALIALHSLLGRI  333 (703)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEECCGG-GCCCSCTTCCCCEEEECCCCC-------C---CCHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChh-hCccccccCCCCEEEeCCCcc-------ccccchhHHHHHHHHHHHH
Confidence            489999999999874    2  2478999974 45  55555899999995331       0111234566666666666


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus       334 lk~  336 (703)
T 3v97_A          334 MKN  336 (703)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.68  E-value=0.0032  Score=41.62  Aligned_cols=44  Identities=14%  Similarity=-0.025  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCC---CCCCCC--Cceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQ---GVPFRA--GAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~---~lPf~~--~sFD~v~s~~~   44 (77)
                      +|+|++|++.|+++.      ...+++++|+.+   .+|+.+  ++||.|++...
T Consensus       103 iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          103 CDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD  157 (232)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence            589999999998763      135788888532   234444  88999998743

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.67  E-value=0.0018  Score=43.11  Aligned_cols=42  Identities=12%  Similarity=0.014  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC------CCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF------RAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf------~~~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.    .  ..+++++|+.+.+|.      .+++||.|++.
T Consensus       101 iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d  154 (237)
T 3c3y_A          101 IDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVD  154 (237)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEEC
Confidence            589999999998763    1  257888987443442      26899999976

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.65  E-value=0.0014  Score=44.68  Aligned_cols=41  Identities=10%  Similarity=0.034  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCC----CCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPF----RAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf----~~~sFD~v~s~   42 (77)
                      +|+|+.|++.++++.     .+.+++++|+ ..++.    .+++||.|++.
T Consensus       114 vD~~~~~l~~~~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~~fD~Vl~d  163 (274)
T 3ajd_A          114 VEISKTRTKALKSNINRMGVLNTIIINADM-RKYKDYLLKNEIFFDKILLD  163 (274)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCH-HHHHHHHHHTTCCEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHhCCCcEEEEeCCh-HhcchhhhhccccCCEEEEc
Confidence            599999999998773     2467899997 45554    37789999987

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.55  E-value=0.02  Score=42.52  Aligned_cols=40  Identities=15%  Similarity=-0.043  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCC-CCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPF-RAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf-~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.     .+..++++|+ ..++. .+++||.|++
T Consensus       148 vDis~~~l~~~~~n~~r~g~~nv~~~~~D~-~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          148 NEFSASRVKVLHANISRCGISNVALTHFDG-RVFGAAVPEMFDAILL  193 (479)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCCS-TTHHHHSTTCEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEeCCH-HHhhhhccccCCEEEE
Confidence            599999999998773     2467889997 45664 5789999997

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.52  E-value=0.011  Score=39.78  Aligned_cols=44  Identities=5%  Similarity=0.068  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCC-Cceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRA-GAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~   46 (77)
                      +|+|++|++.|+++.   .+.+++++|+ ..+|+.+ ..| .|+++.-++
T Consensus        58 vD~~~~~~~~a~~~~~~~~~v~~~~~D~-~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           58 IEIDHKLCKTTENKLVDHDNFQVLNKDI-LQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             ECSCHHHHHHHHHHTTTCCSEEEECCCG-GGCCCCSSCCC-EEEEECCGG
T ss_pred             EECCHHHHHHHHHhhccCCCeEEEEChH-HhCCcccCCCe-EEEEeCCcc
Confidence            599999999999875   3468999997 5688874 456 577775543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.49  E-value=0.0044  Score=45.81  Aligned_cols=62  Identities=10%  Similarity=-0.042  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHH-------HhcC-------CCCcEEEccCCC-CCCC--CCCceeeeeeccchhhhcccCCCCCChHHHHH
Q psy4109           1 MKKNAFYTNVA-------RDRE-------VEGDLVLSDLGQ-GVPF--RAGAFDGAISISALQWLCNADKTSHNPAKRLY   63 (77)
Q Consensus         1 iDiS~~ML~~A-------~~r~-------~~~~~~~~D~~~-~lPf--~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~   63 (77)
                      +|+|++|++.|       +++.       .+.+++++|... ..+|  ..++||+|+++.++ +.           ..+.
T Consensus       272 VDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~-----------~d~~  339 (433)
T 1u2z_A          272 CEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FD-----------EDLN  339 (433)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CC-----------HHHH
T ss_pred             EeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-cc-----------ccHH
Confidence            58899888887       6652       235677776322 2233  35789999987655 21           2334


Q ss_pred             HHHHHHHHHHh
Q psy4109          64 KFFSSLFACLW   74 (77)
Q Consensus        64 ~~~~~l~~~L~   74 (77)
                      ..|+++++.|+
T Consensus       340 ~~L~el~r~LK  350 (433)
T 1u2z_A          340 KKVEKILQTAK  350 (433)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHhCC
Confidence            55666766664

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.41  E-value=0.00081  Score=43.69  Aligned_cols=43  Identities=23%  Similarity=0.148  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCC----Cceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRA----GAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~----~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.      ...+++++|+.+.++ +.+    ++||.|++..
T Consensus       100 vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~  153 (229)
T 2avd_A          100 CEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA  153 (229)
T ss_dssp             EESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred             EECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECC
Confidence            589999999998763      245788888643222 111    7899999864

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=95.39  E-value=0.0016  Score=46.09  Aligned_cols=73  Identities=8%  Similarity=-0.043  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCC---CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPF---RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf---~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|+.|++.|+++.    .   ..+++++|+.+.++.   .+++||.|+++.-..-. ..........+.+++++..++
T Consensus       181 VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~-~~~~~~~~~~~~~~~ll~~~~  259 (332)
T 2igt_A          181 VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGR-GTHGEVWQLFDHLPLMLDICR  259 (332)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEE-CTTCCEEEHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccC-CchHHHHHHHHHHHHHHHHHH
Confidence            699999999999873    1   257899997432221   16789999996421000 000001123455667777776


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       260 ~~Lk  263 (332)
T 2igt_A          260 EILS  263 (332)
T ss_dssp             HTBC
T ss_pred             HhcC
Confidence            6664

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=95.25  E-value=0.0056  Score=41.80  Aligned_cols=50  Identities=6%  Similarity=-0.001  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCC-----Cceeeeeeccc--------hhhhccc
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRA-----GAFDGAISISA--------LQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~--------l~w~~d~   51 (77)
                      +|++++|++.++++..   +.+++++|+ ..+|+.+     +..|.|++|.-        ++|+.+.
T Consensus        49 vEid~~~~~~a~~~~~~~~~v~~i~~D~-~~~~~~~~~~~~~~~~~vvsNlPY~i~~~il~~ll~~~  114 (252)
T 1qyr_A           49 IELDRDLAARLQTHPFLGPKLTIYQQDA-MTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYT  114 (252)
T ss_dssp             ECCCHHHHHHHHTCTTTGGGEEEECSCG-GGCCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTG
T ss_pred             EECCHHHHHHHHHHhccCCceEEEECch-hhCCHHHhhcccCCceEEEECCCCCccHHHHHHHHhcC
Confidence            5999999999998863   468999997 5677643     24579999975        6787643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=95.07  E-value=0.003  Score=45.28  Aligned_cols=72  Identities=13%  Similarity=0.029  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCC---CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPF---RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf---~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|++|++.|+++.    .   +.+++++|+.+.++.   .+++||.|++..-..  ...........+.+++++...+
T Consensus       241 vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~--~~~~~~~~~~~~~~~~ll~~~~  318 (385)
T 2b78_A          241 VDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSF--ARNKKEVFSVSKDYHKLIRQGL  318 (385)
T ss_dssp             EESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCC--CCChhhHHHHHHHHHHHHHHHH
Confidence            599999999998763    2   457999997433442   256899999864210  0000123445666777777766


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       319 ~~L~  322 (385)
T 2b78_A          319 EILS  322 (385)
T ss_dssp             HTEE
T ss_pred             HhcC
Confidence            6554

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=94.63  E-value=0.0084  Score=41.56  Aligned_cols=44  Identities=14%  Similarity=0.034  Sum_probs=35.2

Q ss_pred             CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCC-ceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAG-AFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~-sFD~v~s~~~l   45 (77)
                      +|++++|++.++++..  +.+++++|+ ..+++.+. .||.|++|.-+
T Consensus        74 vEid~~~~~~l~~~~~~~~v~vi~~D~-l~~~~~~~~~~~~iv~NlPy  120 (271)
T 3fut_A           74 IEKDLRLRPVLEETLSGLPVRLVFQDA-LLYPWEEVPQGSLLVANLPY  120 (271)
T ss_dssp             EESCGGGHHHHHHHTTTSSEEEEESCG-GGSCGGGSCTTEEEEEEECS
T ss_pred             EECCHHHHHHHHHhcCCCCEEEEECCh-hhCChhhccCccEEEecCcc
Confidence            5899999999998864  468999997 56777643 69999999743

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.43  E-value=0.0065  Score=45.23  Aligned_cols=40  Identities=3%  Similarity=-0.115  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC-CCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP-FRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP-f~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.    ....++++|+ ..++ +.+++||.|++
T Consensus       132 vDis~~~l~~a~~n~~r~G~~v~~~~~Da-~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A          132 NEVDGKRVRGLLENVERWGAPLAVTQAPP-RALAEAFGTYFHRVLL  176 (464)
T ss_dssp             ECSCHHHHHHHHHHHHHHCCCCEEECSCH-HHHHHHHCSCEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCeEEEEECCH-HHhhhhccccCCEEEE
Confidence            599999999998773    2367888897 4455 45789999995

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=94.39  E-value=0.013  Score=39.93  Aligned_cols=43  Identities=12%  Similarity=-0.161  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|+++++.|+++.    .  ..++.++|..+ .+..++.||+|+..+.
T Consensus        51 vDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~-~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           51 GEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS-AFEEADNIDTITICGM   99 (230)
T ss_dssp             EESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccccccccCEEEEeCC
Confidence            599999999999773    2  35889999754 3333347999876553

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=94.35  E-value=0.0074  Score=42.40  Aligned_cols=42  Identities=12%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCC--C---CCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPF--R---AGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf--~---~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.    ....++++|+ ..+|.  .   .++||+|++..
T Consensus        56 vD~d~~al~~A~~~~~~~g~~v~~v~~d~-~~l~~~l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           56 IDVDSEVLRIAEEKLKEFSDRVSLFKVSY-READFLLKTLGIEKVDGILMDL  106 (301)
T ss_dssp             EESCHHHHHHHHHHTGGGTTTEEEEECCG-GGHHHHHHHTTCSCEEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHhcCCcEEEEECCH-HHHHHHHHhcCCCCCCEEEEcC
Confidence            599999999999875    2457899997 45652  2   16899999754

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=94.24  E-value=0.015  Score=40.04  Aligned_cols=43  Identities=12%  Similarity=-0.095  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|+|+++++.|+++.    .  ..++.++|..+ .+..+..||.|+..++
T Consensus        51 vDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~-~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           51 GEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA-VIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             EESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEecchhh-ccCccccccEEEEeCC
Confidence            599999999999873    2  25889999754 3222336999886643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=94.19  E-value=0.056  Score=38.97  Aligned_cols=40  Identities=10%  Similarity=-0.001  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC--CCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP--FRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP--f~~~sFD~v~s   41 (77)
                      +|+|+.|++.++++.    ....++++|+. .++  +.+++||.|++
T Consensus       276 ~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~-~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          276 VDIDEQRLSRVYDNLKRLGMKATVKQGDGR-YPSQWCGEQQFDRILL  321 (429)
T ss_dssp             EESSTTTHHHHHHHHHHTTCCCEEEECCTT-CTHHHHTTCCEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHcCCCeEEEeCchh-hchhhcccCCCCEEEE
Confidence            589999999998773    34688999974 565  66789999996

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=94.12  E-value=0.017  Score=39.26  Aligned_cols=41  Identities=5%  Similarity=-0.219  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCC-ceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAG-AFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~-sFD~v~s~~   43 (77)
                      +|+|+++++.|+++.    .  ..++.++|..+.+|  ++ .||+|+.++
T Consensus        45 vDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~--~~~~~D~IviaG   92 (225)
T 3kr9_A           45 GEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE--ETDQVSVITIAG   92 (225)
T ss_dssp             EESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC--GGGCCCEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc--cCcCCCEEEEcC
Confidence            599999999999773    2  25789999755454  33 699988654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=93.96  E-value=0.0061  Score=44.86  Aligned_cols=44  Identities=16%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHHhcC------C-CCcEEEccCCCCCCC-CCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDRE------V-EGDLVLSDLGQGVPF-RAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~-~~~~~~~D~~~~lPf-~~~sFD~v~s~~~   44 (77)
                      +|+|+.|++.|+++.      . +.+++++|+.+.++. .+++||+|++...
T Consensus       121 VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP  172 (410)
T 3ll7_A          121 IERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA  172 (410)
T ss_dssp             EESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred             EECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence            599999999998873      1 368999998543443 3568999998643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=93.92  E-value=0.0075  Score=42.91  Aligned_cols=43  Identities=9%  Similarity=-0.055  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCC---CCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPF---RAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf---~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.     .+.+++++|+.+.++.   .+++||.|++..
T Consensus       237 vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          237 VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            599999999998773     2368899997432221   267899999853

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=93.63  E-value=0.0046  Score=42.34  Aligned_cols=47  Identities=11%  Similarity=-0.029  Sum_probs=34.1

Q ss_pred             CCCCH-------HHHHHHHhcC-----CC-CcEEEccCCCCCC-CCC--Cceeeeeeccchhh
Q psy4109           1 MKKNA-------FYTNVARDRE-----VE-GDLVLSDLGQGVP-FRA--GAFDGAISISALQW   47 (77)
Q Consensus         1 iDiS~-------~ML~~A~~r~-----~~-~~~~~~D~~~~lP-f~~--~sFD~v~s~~~l~w   47 (77)
                      +|+|+       +|++.|+++.     .+ .+++++|+.+-++ +.+  ++||+|++...+.+
T Consensus       111 vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          111 FEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             EECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred             EECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence            58999       9999998763     13 6799999743334 444  78999999987765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=93.48  E-value=0.0051  Score=43.84  Aligned_cols=43  Identities=12%  Similarity=0.143  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC---CCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF---RAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf---~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.    .  +.+++++|+.+.++.   .+++||.|++..
T Consensus       246 vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp  297 (396)
T 2as0_A          246 IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP  297 (396)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence            599999999998773    1  457899997432232   267899999864

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=93.46  E-value=0.1  Score=36.82  Aligned_cols=65  Identities=23%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~   68 (77)
                      +||.+++++.|++-.          +..+++.+|..+-+--.+++||+|+.-+.     |+..    |...|  ++||+.
T Consensus       113 VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~-----dp~~----~~~~L~t~eFy~~  183 (294)
T 3o4f_A          113 VEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT-----DPIG----PGESLFTSAFYEG  183 (294)
T ss_dssp             EESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCC-----CCCC----TTCCSSCCHHHHH
T ss_pred             EcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCC-----CcCC----CchhhcCHHHHHH
Confidence            589999999998753          23578999976656567889999998753     2221    22222  568888


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      ++++|+
T Consensus       184 ~~~~L~  189 (294)
T 3o4f_A          184 CKRCLN  189 (294)
T ss_dssp             HHHTEE
T ss_pred             HHHHhC
Confidence            888775

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=93.41  E-value=0.0066  Score=38.19  Aligned_cols=56  Identities=13%  Similarity=-0.053  Sum_probs=29.9

Q ss_pred             CcEE-EccCCCCCC--------CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          18 GDLV-LSDLGQGVP--------FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        18 ~~~~-~~D~~~~lP--------f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      .+++ ++|+. ..+        +.+++||+|+|+.++++............+.+..+++.+++.|+
T Consensus        72 ~~~~~~~d~~-~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  136 (196)
T 2nyu_A           72 ATFLCPADVT-DPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ  136 (196)
T ss_dssp             CEEECSCCTT-SHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CeEEEeccCC-CHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence            5677 78863 332        34568999999876554211000000011222567777777765

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=93.34  E-value=0.013  Score=41.79  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCC---CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPF---RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf---~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|++|++.|+++.    .   +.+++++|+.+.++.   .++.||.|++..-.  +....+......+.+.+++....
T Consensus       249 vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~--~~~~~~~~~~~~~~~~~~l~~~~  326 (396)
T 3c0k_A          249 VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK--FVENKSQLMGACRGYKDINMLAI  326 (396)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSS--TTTCSSSSSCCCTHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCC--CCCChhHHHHHHHHHHHHHHHHH
Confidence            599999999998763    2   457899997432221   15789999997421  10001112222345556666555


Q ss_pred             HHH
Q psy4109          71 ACL   73 (77)
Q Consensus        71 ~~L   73 (77)
                      +.|
T Consensus       327 ~~L  329 (396)
T 3c0k_A          327 QLL  329 (396)
T ss_dssp             HTE
T ss_pred             Hhc
Confidence            544

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=93.29  E-value=0.031  Score=38.74  Aligned_cols=42  Identities=12%  Similarity=-0.089  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHhc-CCCCcEEEccCCCCCCCCCC------ceeeeeecc
Q psy4109           1 MKKNAFYTNVARDR-EVEGDLVLSDLGQGVPFRAG------AFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r-~~~~~~~~~D~~~~lPf~~~------sFD~v~s~~   43 (77)
                      +|+|++|++.|+++ ..+.+++++|+ ..+|+.+-      ..+.|++|.
T Consensus        74 vDid~~~l~~a~~~~~~~v~~i~~D~-~~~~~~~~~~~~~~~~~~vv~Nl  122 (279)
T 3uzu_A           74 VELDRDLIGRLEQRFGELLELHAGDA-LTFDFGSIARPGDEPSLRIIGNL  122 (279)
T ss_dssp             EECCHHHHHHHHHHHGGGEEEEESCG-GGCCGGGGSCSSSSCCEEEEEEC
T ss_pred             EECCHHHHHHHHHhcCCCcEEEECCh-hcCChhHhcccccCCceEEEEcc
Confidence            58999999999988 33568999997 56877542      234688876

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=93.27  E-value=0.005  Score=41.06  Aligned_cols=41  Identities=10%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCC-Cceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRA-GAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~-~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++.   .+.+++++|+ ..+|+.+ ++| .|+|+.
T Consensus        57 id~~~~~~~~a~~~~~~~~~v~~~~~D~-~~~~~~~~~~f-~vv~n~  101 (245)
T 1yub_A           57 IELDSHLFNLSSEKLKLNTRVTLIHQDI-LQFQFPNKQRY-KIVGNI  101 (245)
T ss_dssp             SSSSCSSSSSSSCTTTTCSEEEECCSCC-TTTTCCCSSEE-EEEEEC
T ss_pred             EECCHHHHHHHHHHhccCCceEEEECCh-hhcCcccCCCc-EEEEeC
Confidence            699999999998774   2458899997 5688774 789 788874

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=92.94  E-value=0.11  Score=37.67  Aligned_cols=44  Identities=9%  Similarity=0.033  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+++.|++.|+.+.    .   ...+.++|.. ..+.. +.||.|+++.-+.
T Consensus       214 ~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l-~~~~~-~~fD~Iv~NPPf~  264 (445)
T 2okc_A          214 VDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSL-EKEPS-TLVDVILANPPFG  264 (445)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSSCCSEEECCTT-TSCCS-SCEEEEEECCCSS
T ss_pred             EeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCC-CCccc-CCcCEEEECCCCC
Confidence            489999999998763    2   4678999974 34433 4899999997554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=92.93  E-value=0.064  Score=37.55  Aligned_cols=39  Identities=15%  Similarity=0.001  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.      .+.+++++|+. .++   ++||.|+++.
T Consensus       222 vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~-~~~---~~fD~Vi~dp  266 (336)
T 2yx1_A          222 IDINPHAIELLKKNIKLNKLEHKIIPILSDVR-EVD---VKGNRVIMNL  266 (336)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCGG-GCC---CCEEEEEECC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECChH-Hhc---CCCcEEEECC
Confidence            599999999998773      23689999974 444   8899999873

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=92.83  E-value=0.046  Score=39.90  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++|++.|+++..    ..+++++|+. .++.  .+||.|++..
T Consensus       318 vD~s~~ai~~A~~n~~~ngl~v~~~~~d~~-~~~~--~~fD~Vv~dP  361 (425)
T 2jjq_A          318 FDSNEFAIEMARRNVEINNVDAEFEVASDR-EVSV--KGFDTVIVDP  361 (425)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCEEEEECCTT-TCCC--TTCSEEEECC
T ss_pred             EECCHHHHHHHHHHHHHcCCcEEEEECChH-HcCc--cCCCEEEEcC
Confidence            5999999999987741    2679999984 4432  2899999853

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=90.75  E-value=0.15  Score=35.64  Aligned_cols=40  Identities=10%  Similarity=-0.113  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCC---Cceeeeee
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRA---GAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~---~sFD~v~s   41 (77)
                      +|+|+.|++.++++.     .+.+++++|+. .++...   ++||.|+.
T Consensus       133 ~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          133 FDLDAKRLASMATLLARAGVSCCELAEEDFL-AVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GSCTTCGGGTTEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEeCChH-hcCccccccCCCCEEEE
Confidence            599999999998773     24678999974 454332   57999996

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=90.13  E-value=0.19  Score=33.92  Aligned_cols=41  Identities=7%  Similarity=0.058  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHhcC-CCCcEEEccCCCCCCCCCC--ceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-VEGDLVLSDLGQGVPFRAG--AFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-~~~~~~~~D~~~~lPf~~~--sFD~v~s~~   43 (77)
                      +|+|+.|++.++++. .+.+++++|+ ..+|+.+.  .| .|+++.
T Consensus        60 vEid~~~~~~~~~~~~~~v~~i~~D~-~~~~~~~~~~~~-~vv~Nl  103 (249)
T 3ftd_A           60 IELDREMVENLKSIGDERLEVINEDA-SKFPFCSLGKEL-KVVGNL  103 (249)
T ss_dssp             ECCCHHHHHHHTTSCCTTEEEECSCT-TTCCGGGSCSSE-EEEEEC
T ss_pred             EECCHHHHHHHHhccCCCeEEEEcch-hhCChhHccCCc-EEEEEC
Confidence            599999999999872 2358999997 56887642  34 777775

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=89.52  E-value=0.037  Score=41.07  Aligned_cols=41  Identities=7%  Similarity=-0.044  Sum_probs=30.9

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC-CCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP-FRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP-f~~~sFD~v~s~   42 (77)
                      +|+|+.|++.++++.     .+..++++|+ ..++ +.+++||.|++.
T Consensus       136 vDis~~rl~~~~~n~~r~g~~nv~v~~~Da-~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          136 NEIFPKRAKILSENIERWGVSNAIVTNHAP-AELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCSSEEEECCCH-HHHHHHHTTCEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhhhccccCCEEEEC
Confidence            599999999998773     2356778886 3454 457899999974

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=89.00  E-value=0.053  Score=38.37  Aligned_cols=42  Identities=2%  Similarity=-0.180  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC-CCC--------------Cceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP-FRA--------------GAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP-f~~--------------~sFD~v~s~   42 (77)
                      +|+|++|++.|+++.     .+.+++++|+.+-++ +.+              ++||.|+..
T Consensus       241 vd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~d  302 (369)
T 3bt7_A          241 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD  302 (369)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEEC
Confidence            599999999998763     246789999743222 221              379999864

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=88.77  E-value=0.46  Score=35.77  Aligned_cols=45  Identities=9%  Similarity=-0.105  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHhcC----CCCcE--EEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE----VEGDL--VLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~--~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+++.|+++|+.+.    ....+  .++|.-...++.+..||.|++|.=+
T Consensus       289 ~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf  339 (544)
T 3khk_A          289 QESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPF  339 (544)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCS
T ss_pred             EeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCc
Confidence            589999999999763    22334  7888644334667899999998644

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=88.58  E-value=0.04  Score=35.58  Aligned_cols=28  Identities=11%  Similarity=-0.001  Sum_probs=19.5

Q ss_pred             CCcEEEccCCCCCCCC-------C----Cceeeeeeccch
Q psy4109          17 EGDLVLSDLGQGVPFR-------A----GAFDGAISISAL   45 (77)
Q Consensus        17 ~~~~~~~D~~~~lPf~-------~----~sFD~v~s~~~l   45 (77)
                      +..++++|+. ..+..       +    ++||.|+|....
T Consensus        63 ~v~~~~~D~~-~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~  101 (191)
T 3dou_A           63 GVRFIRCDIF-KETIFDDIDRALREEGIEKVDDVVSDAMA  101 (191)
T ss_dssp             TCEEEECCTT-SSSHHHHHHHHHHHHTCSSEEEEEECCCC
T ss_pred             CeEEEEcccc-CHHHHHHHHHHhhcccCCcceEEecCCCc
Confidence            4688999984 44421       1    489999998653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=88.31  E-value=0.049  Score=38.00  Aligned_cols=26  Identities=15%  Similarity=-0.006  Sum_probs=19.3

Q ss_pred             CCcEEEc-cCCCCCCCCCCceeeeeeccch
Q psy4109          17 EGDLVLS-DLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus        17 ~~~~~~~-D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      ...++++ |+ ..+|  +++||+|+|..++
T Consensus       132 ~v~~~~~~D~-~~l~--~~~fD~V~sd~~~  158 (305)
T 2p41_A          132 LVRLQSGVDV-FFIP--PERCDTLLCDIGE  158 (305)
T ss_dssp             GEEEECSCCT-TTSC--CCCCSEEEECCCC
T ss_pred             CeEEEecccc-ccCC--cCCCCEEEECCcc
Confidence            3577888 86 3454  6789999998765

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=87.57  E-value=0.1  Score=36.71  Aligned_cols=39  Identities=13%  Similarity=0.047  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+++.|++.|    ...+++++|+. ..+ .++.||+|+++.-+
T Consensus        70 vDi~~~~~~~a----~~~~~~~~D~~-~~~-~~~~fD~Ii~NPPy  108 (421)
T 2ih2_A           70 VEIDPKALDLP----PWAEGILADFL-LWE-PGEAFDLILGNPPY  108 (421)
T ss_dssp             EESCTTTCCCC----TTEEEEESCGG-GCC-CSSCEEEEEECCCC
T ss_pred             EECCHHHHHhC----CCCcEEeCChh-hcC-ccCCCCEEEECcCc
Confidence            47777777776    23578899974 333 35789999998644

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=86.09  E-value=0.28  Score=36.78  Aligned_cols=46  Identities=9%  Similarity=-0.103  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHhcC----CC------CcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE----VE------GDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~------~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+++.|+++|+.+.    ..      ..+.++|.....++..+.||.|++|.-+.
T Consensus       217 iEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~  272 (541)
T 2ar0_A          217 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG  272 (541)
T ss_dssp             EESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCT
T ss_pred             EcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcc
Confidence            489999999998763    22      57899996432234567899999997543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=85.20  E-value=0.5  Score=34.11  Aligned_cols=41  Identities=15%  Similarity=0.136  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHhc----CC--CCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109           1 MKKNAFYTNVARDR----EV--EGDLVLSDLGQGVPFRAGAFDGAISISA   44 (77)
Q Consensus         1 iDiS~~ML~~A~~r----~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~   44 (77)
                      +|.|+ |++.|++.    +.  ...++++|+ +.+.++ +.||+|+|...
T Consensus       112 ve~s~-~~~~a~~~~~~n~~~~~i~~i~~~~-~~~~lp-e~~DvivsE~~  158 (376)
T 4hc4_A          112 VEASA-IWQQAREVVRFNGLEDRVHVLPGPV-ETVELP-EQVDAIVSEWM  158 (376)
T ss_dssp             EECST-THHHHHHHHHHTTCTTTEEEEESCT-TTCCCS-SCEEEEECCCC
T ss_pred             EeChH-HHHHHHHHHHHcCCCceEEEEeeee-eeecCC-ccccEEEeecc
Confidence            47775 88888754    22  357899998 557654 67999999543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=84.20  E-value=0.93  Score=31.36  Aligned_cols=41  Identities=12%  Similarity=0.045  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+||..++.++++.    .  ...++++|+. .++ ..+.||.|+.+.
T Consensus       154 vD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~-~~~-~~~~~D~Vi~~~  200 (278)
T 3k6r_A          154 IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFP-GENIADRILMGY  200 (278)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCC-CCSCEEEEEECC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEeCcHH-Hhc-cccCCCEEEECC
Confidence            599999999998763    2  2478899974 455 467899999773

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=83.16  E-value=0.18  Score=34.56  Aligned_cols=47  Identities=6%  Similarity=-0.059  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHhc-------C-------CCCcEEEccCCCCCCCCCCceeeeeeccchhh
Q psy4109           1 MKKNAFYTNVARDR-------E-------VEGDLVLSDLGQGVPFRAGAFDGAISISALQW   47 (77)
Q Consensus         1 iDiS~~ML~~A~~r-------~-------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w   47 (77)
                      +|+|+.|.+.+++.       .       .+.+++++|+.+-++..++.||+|+....+.+
T Consensus       116 vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          116 LERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             EECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred             EECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence            58899874444332       1       13578999974435533457999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.27
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.25
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.19
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.17
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.11
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.04
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.99
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.93
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.89
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.86
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.82
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.79
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.75
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.72
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.64
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.52
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.22
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.18
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.16
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.06
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.04
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.93
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.92
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.59
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.58
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.55
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.43
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.36
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.35
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.33
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.14
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.98
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.94
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	96.93
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.89
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.82
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.77
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.68
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.65
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	96.21
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.16
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.85
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.4
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.37
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.29
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	94.33
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.14
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.01
d2h00a1	250	Methyltransferase 10 domain containing protein MET	94.0
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	93.91
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	93.89
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	93.73
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	93.58
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	93.08
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	92.36
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	92.08
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	92.0
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	90.35
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	89.8
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	89.75
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	89.66
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	89.38
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	87.13
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	85.51
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	83.51
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	81.82
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	80.91
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	80.1
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	80.08

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=2e-12  Score=84.98  Aligned_cols=62  Identities=15%  Similarity=0.108  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+..++++|+ +.+||.+++||+|+|..+++|+.|+           ..+|++++++|+
T Consensus        44 vD~S~~~l~~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~r~Lk  110 (234)
T d1xxla_          44 VDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRYAAHHFSDV-----------RKAVREVARVLK  110 (234)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EeCChhhhhhhhhhhccccccccccccccc-ccccccccccceeeeeceeecccCH-----------HHHHHHHHHeeC
Confidence            599999999998773     2468899997 6799999999999999999999664           357777777765

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.25  E-value=2.6e-12  Score=83.36  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.     .+.+++++|+ +.+||.+++||.|+|..+++|++|+           .++|++++++|+
T Consensus        43 vD~s~~~i~~A~~~~~~~~~~~i~~~~~d~-~~l~~~~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~r~Lk  109 (231)
T d1vl5a_          43 FDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDERFHIVTCRIAAHHFPNP-----------ASFVSEAYRVLK  109 (231)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             EECCHHHHhhhhhccccccccccccccccc-ccccccccccccccccccccccCCH-----------HHHHHHHHHhcC
Confidence            599999999998763     3468999997 6799999999999999999999664           357888888775

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=1.1e-11  Score=79.60  Aligned_cols=60  Identities=13%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|++++  ..++++|+ +.+|+.+++||.|+|+.+++|+.|+           ..+|++++++|+
T Consensus        60 iD~s~~~~~~a~~~~--~~~~~~d~-~~l~~~~~~fD~I~~~~~l~h~~d~-----------~~~l~~~~~~L~  119 (208)
T d1vlma_          60 VEPSERMAEIARKRG--VFVLKGTA-ENLPLKDESFDFALMVTTICFVDDP-----------ERALKEAYRILK  119 (208)
T ss_dssp             EESCHHHHHHHHHTT--CEEEECBT-TBCCSCTTCEEEEEEESCGGGSSCH-----------HHHHHHHHHHEE
T ss_pred             EeCChhhcccccccc--cccccccc-ccccccccccccccccccccccccc-----------ccchhhhhhcCC
Confidence            599999999999985  67999997 6899999999999999999999653           357888888875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=1.9e-11  Score=78.29  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ....++++|+ +.+|+.+++||.|+|..+++|+.         .+.++++|+++++.|+
T Consensus        65 iD~S~~~i~~ak~~~~~~~~~~~~~~~d~-~~l~~~~~~fD~I~~~~~l~~~~---------~~d~~~~l~~i~~~Lk  132 (226)
T d1ve3a1          65 VDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDSIVHFE---------PLELNQVFKEVRRVLK  132 (226)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEECCT-TSCCSCTTCEEEEEEESCGGGCC---------HHHHHHHHHHHHHHEE
T ss_pred             ccccccchhhhhhhhcccccccccccccc-ccccccCcCceEEEEecchhhCC---------hhHHHHHHHHHHHHcC
Confidence            599999999998764    3467899997 67999999999999999999873         3457789999999886

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=4.1e-11  Score=77.55  Aligned_cols=61  Identities=26%  Similarity=0.456  Sum_probs=49.2

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|++++. ..++++|+ +.+||.+++||.|+|+ .++||++|+           .++|+++++.|+
T Consensus        70 iD~s~~~l~~a~~~~~-~~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~~d~-----------~~~l~~i~r~Lk  131 (246)
T d2avna1          70 VDPSKEMLEVAREKGV-KNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVENK-----------DKAFSEIRRVLV  131 (246)
T ss_dssp             EESCHHHHHHHHHHTC-SCEEECCT-TSCCSCTTCEEEEEECSSHHHHCSCH-----------HHHHHHHHHHEE
T ss_pred             eecccccccccccccc-cccccccc-cccccccccccceeeecchhhhhhhH-----------HHHHHHHHhhcC
Confidence            5999999999999874 34788997 6899999999999986 489998664           246677777665

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.04  E-value=1.1e-10  Score=78.55  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.      ...+++++|+ +.+||++++||+|+|+.+++|++|+           .++|++++++|+
T Consensus        96 vD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l~~~~~sfD~V~~~~~l~h~~d~-----------~~~l~~~~~~Lk  163 (282)
T d2o57a1          96 LNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIPCEDNSYDFIWSQDAFLHSPDK-----------LKVFQECARVLK  163 (282)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCSSCTTCEEEEEEESCGGGCSCH-----------HHHHHHHHHHEE
T ss_pred             Eeccchhhhhhhccccccccccccccccccc-ccccccccccchhhccchhhhccCH-----------HHHHHHHHHhcC
Confidence            599999999999774      2357999997 6799999999999999999999654           468888888886

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.7e-10  Score=75.19  Aligned_cols=64  Identities=13%  Similarity=0.065  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|+++..     ..+++++|+ +.+++.+++||+|++..+++|+.+         ..+..+++++++.|+
T Consensus        89 vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~~l~h~~~---------~~~~~~l~~i~~~Lk  157 (222)
T d2ex4a1          89 VDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVIGHLTD---------QHLAEFLRRCKGSLR  157 (222)
T ss_dssp             EESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             eecCHHHhhccccccccccccccccccccc-cccccccccccccccccccccchh---------hhhhhHHHHHHHhcC
Confidence            6999999999998753     247899998 679999999999999999998743         456779999998886

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.93  E-value=3.8e-10  Score=75.80  Aligned_cols=64  Identities=14%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++..   ..+++++|+ +.+++.+++||+|+|..+++|+.|         ..+.++|+++++.|+
T Consensus       122 vD~s~~~l~~a~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~I~~~~vl~hl~d---------~d~~~~l~~~~~~Lk  188 (254)
T d1xtpa_         122 LEPVKHMLEEAKRELAGMPVGKFILASM-ETATLPPNTYDLIVIQWTAIYLTD---------ADFVKFFKHCQQALT  188 (254)
T ss_dssp             EESCHHHHHHHHHHTTTSSEEEEEESCG-GGCCCCSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             EcCCHHHHHhhhccccccccceeEEccc-cccccCCCccceEEeeccccccch---------hhhHHHHHHHHHhcC
Confidence            5899999999998863   257899998 679999999999999999998854         456789999998876

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.89  E-value=7e-10  Score=73.54  Aligned_cols=66  Identities=17%  Similarity=0.038  Sum_probs=54.2

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCC-CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPF-RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf-~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|++||+.|++|..      ...+.++|+. ..++ .+++||+|+|.+++||+.       .+.+.++.+|+++++.|
T Consensus        53 iD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~i~~~L  124 (252)
T d1ri5a_          53 VDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQFSFHYAF-------STSESLDIAQRNIARHL  124 (252)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEESCGGGGG-------SSHHHHHHHHHHHHHTE
T ss_pred             ecCCHHHHHHHHHHHHhcCCCcceEEEEcchh-hhcccccccceEEEEcceeeecC-------CCHHHHHHHHHHHhcee
Confidence            6999999999987642      3568899974 5665 577999999999999984       44788999999999988


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       125 k  125 (252)
T d1ri5a_         125 R  125 (252)
T ss_dssp             E
T ss_pred             C
Confidence            6

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.86  E-value=8.8e-10  Score=72.33  Aligned_cols=64  Identities=14%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|++|.    .+.+++++|+ ..+++ +++||+|+|. .+++|+.+        .+.++++|+++++.|+
T Consensus        65 vD~S~~ml~~A~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~i~~~~~~~~~~~~--------~~~~~~~l~~~~~~Lk  133 (246)
T d1y8ca_          65 VDLSQEMLSEAENKFRSQGLKPRLACQDI-SNLNI-NRKFDLITCCLDSTNYIID--------SDDLKKYFKAVSNHLK  133 (246)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEECCCG-GGCCC-SCCEEEEEECTTGGGGCCS--------HHHHHHHHHHHHTTEE
T ss_pred             eccchhhhhhccccccccCccceeeccch-hhhcc-cccccccceeeeeeeccCC--------HHHHHHHHHHHHHhCC
Confidence            699999999998773    3578999998 45775 5689999987 47887743        4678889999998876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=2.6e-09  Score=69.53  Aligned_cols=63  Identities=21%  Similarity=0.377  Sum_probs=50.9

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ....++++|+ +.+|+. +.||+|+|. .+++|+         ..+.++.+|++++++|+
T Consensus        69 vD~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l~~~-~~fD~I~~~~~~~~~~---------~~~~~~~~L~~~~~~Lk  136 (251)
T d1wzna1          69 LDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIAFK-NEFDAVTMFFSTIMYF---------DEEDLRKLFSKVAEALK  136 (251)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCCCC-SCEEEEEECSSGGGGS---------CHHHHHHHHHHHHHHEE
T ss_pred             Eeeccccccccccccccccccchheehhh-hhcccc-cccchHhhhhhhhhcC---------ChHHHHHHHHHHHHHcC
Confidence            699999999999874    3578999998 679986 589999997 477765         12456789999999986

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.4e-09  Score=72.07  Aligned_cols=47  Identities=17%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+|+.|++.|+++.++..++++|+ +.+||.+++||.|++..+++++
T Consensus       114 iD~s~~~~~~a~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~  160 (268)
T d1p91a_         114 LDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYAPCKA  160 (268)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESCCCCH
T ss_pred             ecchHhhhhhhhcccccccceeeeh-hhccCCCCCEEEEeecCCHHHH
Confidence            5999999999999988889999997 6899999999999999887654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.76  E-value=2.7e-09  Score=72.16  Aligned_cols=61  Identities=11%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++..    ..++.++|+ +.+|+. ++||.|+|+.+++|+.|+           ..++++++++|+
T Consensus        58 iD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~~~~-~~fD~v~~~~~l~~~~d~-----------~~~l~~~~~~Lk  122 (281)
T d2gh1a1          58 IDSGETLLAEARELFRLLPYDSEFLEGDA-TEIELN-DKYDIAICHAFLLHMTTP-----------ETMLQKMIHSVK  122 (281)
T ss_dssp             EECCHHHHHHHHHHHHSSSSEEEEEESCT-TTCCCS-SCEEEEEEESCGGGCSSH-----------HHHHHHHHHTEE
T ss_pred             EecchhHhhhhhccccccccccccccccc-cccccc-CCceEEEEehhhhcCCCH-----------HHHHHHHHHHcC
Confidence            5999999999998742    357899997 578875 579999999999999654           346777777664

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.7e-09  Score=70.10  Aligned_cols=61  Identities=18%  Similarity=0.115  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.    .  ..+++++|+ +.+ +.+++||.|+|..+++|+.|+           .++|+++++.|+
T Consensus        62 vD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~-~~~-~~~~~fD~v~~~~~~~~~~d~-----------~~~l~~~~r~Lk  128 (245)
T d1nkva_          62 IDMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGY-VANEKCDVAACVGATWIAGGF-----------AGAEELLAQSLK  128 (245)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCC-TTC-CCSSCEEEEEEESCGGGTSSS-----------HHHHHHHTTSEE
T ss_pred             EecccchhhHHHHHHHHhhccccchhhhhHH-hhc-cccCceeEEEEEehhhccCCH-----------HHHHHHHHHHcC
Confidence            699999999998772    2  258999998 456 468999999999999999764           357777776665

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.72  E-value=3.5e-09  Score=69.05  Aligned_cols=49  Identities=10%  Similarity=0.129  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHhcCC-CCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109           1 MKKNAFYTNVARDREV-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA   51 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~   51 (77)
                      +|+|++|++.|+++.. +.+++++|+ +.+++ +++||+|++..+|+|+.|+
T Consensus        48 iD~s~~~i~~a~~~~~~~~~~~~~~~-~~~~~-~~~fD~I~~~~vleh~~d~   97 (225)
T d2p7ia1          48 VEASEEAISHAQGRLKDGITYIHSRF-EDAQL-PRRYDNIVLTHVLEHIDDP   97 (225)
T ss_dssp             EESCHHHHHHHHHHSCSCEEEEESCG-GGCCC-SSCEEEEEEESCGGGCSSH
T ss_pred             EeCcHHHhhhhhcccccccccccccc-ccccc-ccccccccccceeEecCCH
Confidence            5999999999998864 368899997 56665 6899999999999999654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=1e-08  Score=65.53  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|+++.     .+.++..+|+ ..+++ +++||.|+|..+++|+++         ..+..++++++++|+
T Consensus        58 vD~s~~~l~~a~~~~~~~~~~~~~~~~~d~-~~~~~-~~~fD~I~~~~~~~~~~~---------~~~~~~l~~~~~~L~  125 (198)
T d2i6ga1          58 WDKNPASMANLERIKAAEGLDNLQTDLVDL-NTLTF-DGEYDFILSTVVMMFLEA---------QTIPGLIANMQRCTK  125 (198)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTEEEEECCT-TTCCC-CCCEEEEEEESCGGGSCT---------THHHHHHHHHHHTEE
T ss_pred             ccCcHHHHHHHHHHhhhccccchhhhheec-ccccc-cccccEEEEeeeeecCCH---------HHHHHHHHHHHHHcC
Confidence            599999999987653     2347788897 45665 788999999999988733         456778999988875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.64  E-value=1.5e-08  Score=65.78  Aligned_cols=63  Identities=11%  Similarity=0.107  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++||+.|+++.    .  ...+..+|+   .++..+.||.++++.++||+..         +...++|+++|++|+
T Consensus        71 iD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~~~~~~~~d~i~~~~~l~~~~~---------~d~~~~l~~i~~~Lk  138 (225)
T d1im8a_          71 IDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMVILNFTLQFLPP---------EDRIALLTKIYEGLN  138 (225)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---TTCCCCSEEEEEEESCGGGSCG---------GGHHHHHHHHHHHEE
T ss_pred             eCCCHHHHHHHHHHhHhhcccchhhhccchh---hccccccceeeEEeeeccccCh---------hhHHHHHHHHHHhCC
Confidence            699999999999873    1  234565564   4556678999999999999842         234568999999886


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       139 p  139 (225)
T d1im8a_         139 P  139 (225)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.52  E-value=2.2e-08  Score=61.98  Aligned_cols=66  Identities=11%  Similarity=-0.089  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHhcC-----------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLY   63 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~   63 (77)
                      +|+|+.|++.|+++.                 ....++++|+.+..|....+||+|++..+++|+.         ....+
T Consensus        48 vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~---------~~~~~  118 (201)
T d1pjza_          48 AELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP---------ADMRE  118 (201)
T ss_dssp             EEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSC---------HHHHH
T ss_pred             ecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccceeEEEEEeeeEecc---------hhhhH
Confidence            699999999999863                 2236888997543335578899999999998763         34567


Q ss_pred             HHHHHHHHHHhh
Q psy4109          64 KFFSSLFACLWS   75 (77)
Q Consensus        64 ~~~~~l~~~L~~   75 (77)
                      .+++++++.|+.
T Consensus       119 ~~~~~i~~~Lkp  130 (201)
T d1pjza_         119 RYVQHLEALMPQ  130 (201)
T ss_dssp             HHHHHHHHHSCS
T ss_pred             HHHHHHHHhcCC
Confidence            799999998864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.3e-07  Score=60.23  Aligned_cols=63  Identities=8%  Similarity=-0.118  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHhcCC---CC-----cEEEccCC-----CCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV---EG-----DLVLSDLG-----QGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~-----~~~~~D~~-----~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~   67 (77)
                      +|+|++|++.|+++..   ..     ++.+.++.     ...++.+++||+|+|..+++|++|+           ..+++
T Consensus        76 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~-----------~~~l~  144 (280)
T d1jqea_          76 VEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI-----------PATLK  144 (280)
T ss_dssp             ECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH-----------HHHHH
T ss_pred             EeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCH-----------HHHHH
Confidence            5999999999988742   11     12222210     1246789999999999999999654           35677


Q ss_pred             HHHHHHh
Q psy4109          68 SLFACLW   74 (77)
Q Consensus        68 ~l~~~L~   74 (77)
                      ++++.|+
T Consensus       145 ~l~~~Lk  151 (280)
T d1jqea_         145 FFHSLLG  151 (280)
T ss_dssp             HHHHTEE
T ss_pred             HHHhhCC
Confidence            7776664

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.4e-07  Score=59.40  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=32.4

Q ss_pred             CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          28 GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        28 ~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      ..|+.+++||+|+|..++||+.       ...+..+.+++++++.|+
T Consensus       145 ~~~~~~~~fD~i~~~~~l~~~~-------~~~~~~~~~l~~i~~~Lk  184 (257)
T d2a14a1         145 LAPAVLPLADCVLTLLAMECAC-------CSLDAYRAALCNLASLLK  184 (257)
T ss_dssp             TTTCCCCCEEEEEEESCHHHHC-------SSHHHHHHHHHHHHTTEE
T ss_pred             cccccCCcccEEeehhhHHHhc-------ccHHHHHHHHHHHHhccC
Confidence            3578899999999999999984       334677788888888775

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.2e-07  Score=58.24  Aligned_cols=65  Identities=12%  Similarity=-0.001  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHhcCC----------------------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCCh
Q psy4109           1 MKKNAFYTNVARDREV----------------------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNP   58 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----------------------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p   58 (77)
                      +|+|+.|++.|+++..                      ..+++++|+.+-.|..++.||+|++..+++++         +
T Consensus        73 vD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~---------~  143 (229)
T d2bzga1          73 VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI---------N  143 (229)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS---------C
T ss_pred             EeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEec---------c
Confidence            6999999999987632                      34678889744335778999999999999866         3


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy4109          59 AKRLYKFFSSLFACLW   74 (77)
Q Consensus        59 ~~~l~~~~~~l~~~L~   74 (77)
                      +...+++++++++.|+
T Consensus       144 ~~~r~~~~~~~~~~Lk  159 (229)
T d2bzga1         144 PGDRKCYADTMFSLLG  159 (229)
T ss_dssp             GGGHHHHHHHHHHTEE
T ss_pred             chhhHHHHHHHHhhcC
Confidence            3445678888888775

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.06  E-value=1.6e-06  Score=59.35  Aligned_cols=69  Identities=9%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHhcCC----C--CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDREV----E--GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+++++.|+++..    .  ..+...|    .++.+++||.|+|+.++.++.+..  ..+..+.++++|++++++|+
T Consensus        90 it~s~~q~~~a~~~~~~~~l~~~v~~~~~d----~~~~~~~fD~i~sie~~eH~~~~~--~~~~~~~~~~~f~~i~~~Lk  163 (291)
T d1kpia_          90 LTLSENQYAHDKAMFDEVDSPRRKEVRIQG----WEEFDEPVDRIVSLGAFEHFADGA--GDAGFERYDTFFKKFYNLTP  163 (291)
T ss_dssp             EESCHHHHHHHHHHHHHSCCSSCEEEEECC----GGGCCCCCSEEEEESCGGGTTCCS--SCCSTTHHHHHHHHHHHTSC
T ss_pred             ccchHHHHHHHHHHHHhhccchhhhhhhhc----ccccccccceEeechhHHhcchhh--hhhHHHHHHHHHHHHHHhCC
Confidence            5899999999887631    1  2333334    466789999999999999997643  23456788999999999986


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       164 p  164 (291)
T d1kpia_         164 D  164 (291)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=6e-07  Score=60.10  Aligned_cols=69  Identities=10%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHhcCCC---------CcEEEccCC---CCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREVE---------GDLVLSDLG---QGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFS   67 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~---------~~~~~~D~~---~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~   67 (77)
                      +|+|++||+.|+++...         ..+..+|+.   ..+|. +++||.|++.+ +++|+.++.    ...+.++.+|+
T Consensus        84 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~----~~~~~~~~~l~  158 (292)
T d1xvaa_          84 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSK----GDQSEHRLALK  158 (292)
T ss_dssp             EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTT----SSSHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEEEEecCchhhcCCcc----cChHHHHHHHH
Confidence            69999999999876421         122223321   12333 56799999875 899997653    23467888999


Q ss_pred             HHHHHHh
Q psy4109          68 SLFACLW   74 (77)
Q Consensus        68 ~l~~~L~   74 (77)
                      ++++.|+
T Consensus       159 ~~~~~Lk  165 (292)
T d1xvaa_         159 NIASMVR  165 (292)
T ss_dssp             HHHHTEE
T ss_pred             HHHHHcC
Confidence            9998886

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.93  E-value=9.6e-06  Score=51.38  Aligned_cols=62  Identities=15%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHhcC-------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL   73 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L   73 (77)
                      +|+|+.|++.|+++.       ...+++.+|+.+  ++.+++||.|+++..+++.          .+.+..+++.+++.|
T Consensus        80 iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~--~~~~~~fD~Ii~~~p~~~~----------~~~~~~~l~~~~~~L  147 (194)
T d1dusa_          80 ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE--NVKDRKYNKIITNPPIRAG----------KEVLHRIIEEGKELL  147 (194)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT--TCTTSCEEEEEECCCSTTC----------HHHHHHHHHHHHHHE
T ss_pred             eeeccccchhHHHHHHHhCCccceEEEEEcchhh--hhccCCceEEEEcccEEec----------chhhhhHHHHHHHhc
Confidence            599999999998752       135788899743  6679999999999887542          345667888887777


Q ss_pred             h
Q psy4109          74 W   74 (77)
Q Consensus        74 ~   74 (77)
                      +
T Consensus       148 k  148 (194)
T d1dusa_         148 K  148 (194)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.4e-06  Score=55.99  Aligned_cols=67  Identities=10%  Similarity=-0.042  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHhcCCC-----------------------------------CcEEEccCCC-----CCCCCCCceeeee
Q psy4109           1 MKKNAFYTNVARDREVE-----------------------------------GDLVLSDLGQ-----GVPFRAGAFDGAI   40 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~-----------------------------------~~~~~~D~~~-----~lPf~~~sFD~v~   40 (77)
                      +|+|+.|++.|+++...                                   ...+.+|+..     ..++.+++||+|+
T Consensus        83 ~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~  162 (263)
T d2g72a1          83 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV  162 (263)
T ss_dssp             ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred             EeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeee
Confidence            59999999999865310                                   0123445532     3446678999999


Q ss_pred             eccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          41 SISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        41 s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      ++++++|+.       .-.+..+.+++++++.|+
T Consensus       163 ~~~~l~~i~-------~~~~~~~~~l~~~~~~Lk  189 (263)
T d2g72a1         163 SAFCLEAVS-------PDLASFQRALDHITTLLR  189 (263)
T ss_dssp             EESCHHHHC-------SSHHHHHHHHHHHHTTEE
T ss_pred             eHHHHHHHc-------cCHHHHHHHHHHHHHHcC
Confidence            999999983       123557888899988875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=7.8e-06  Score=55.31  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=46.2

Q ss_pred             CCCCHHHHHHHHhcC----CC--CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VE--GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.    ..  ..+...|. .   ..+++||.|+|+.+++++         +.+.++.+|+++++.|+
T Consensus        81 i~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~-~---~~~~~fD~i~si~~~eh~---------~~~~~~~~f~~i~~~Lk  147 (280)
T d2fk8a1          81 LTLSKNQHARCEQVLASIDTNRSRQVLLQGW-E---DFAEPVDRIVSIEAFEHF---------GHENYDDFFKRCFNIMP  147 (280)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSCEEEEESCG-G---GCCCCCSEEEEESCGGGT---------CGGGHHHHHHHHHHHSC
T ss_pred             ecchHHHHHHHHHHHHhhccccchhhhhhhh-h---hhccchhhhhHhhHHHHh---------hhhhHHHHHHHHHhccC
Confidence            589999999998774    22  24454554 2   236899999999999866         34557889999999986


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       148 p  148 (280)
T d2fk8a1         148 A  148 (280)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.59  E-value=7.2e-06  Score=51.77  Aligned_cols=44  Identities=11%  Similarity=-0.034  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+|++|++.|++|.      .+.+++++|+ ..+++....||.|+++...
T Consensus        61 vD~~~~~l~~a~~n~~~~gl~~~v~~~~gda-~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          61 IDRNPEAISTTEMNLQRHGLGDNVTLMEGDA-PEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCTTEEEEESCH-HHHHTTSCCEEEEEESCCT
T ss_pred             ecCCHHHHHHHHHHHHHcCCCcceEEEECch-hhcccccCCcCEEEEeCcc
Confidence            599999999999873      2457899997 5677788999999998653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.58  E-value=2.2e-05  Score=51.47  Aligned_cols=61  Identities=16%  Similarity=0.009  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ ++|++.|+++.      ...+++.+|+.+.   .+++||+|++..++|++.+         +...++|++++++|+
T Consensus       110 ~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---~~~~~D~v~~~~vlh~~~d---------~~~~~~L~~~~~~Lk  176 (253)
T d1tw3a2         110 LEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LPRKADAIILSFVLLNWPD---------HDAVRILTRCAEALE  176 (253)
T ss_dssp             EEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSSCEEEEEEESCGGGSCH---------HHHHHHHHHHHHTEE
T ss_pred             ccC-HHHHHHHHHHHHHhhcccchhhccccchhh---cccchhheeeccccccCCc---------hhhHHHHHHHHHhcC
Confidence            366 67999988763      1357899997442   3457999999999998743         345578999998885

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=9.4e-06  Score=52.72  Aligned_cols=63  Identities=14%  Similarity=0.018  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHhcCC----CCcEEEccCCC-CCCCCCCceeeeee-----ccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV----EGDLVLSDLGQ-GVPFRAGAFDGAIS-----ISALQWLCNADKTSHNPAKRLYKFFSSLF   70 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~-~lPf~~~sFD~v~s-----~~~l~w~~d~~~~~~~p~~~l~~~~~~l~   70 (77)
                      +|+|++|++.|+++..    ....+.+|+.. ..++.+++||.|+.     ..+++++.           ....+|++++
T Consensus        82 id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~-----------~~~~~~~~~~  150 (229)
T d1zx0a1          82 IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTH-----------QFNFIKNHAF  150 (229)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTH-----------HHHHHHHTHH
T ss_pred             eCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccccccccccc-----------CHHHHHHHHH
Confidence            5899999999998853    23455555321 34677899998873     44444432           3456888888


Q ss_pred             HHHh
Q psy4109          71 ACLW   74 (77)
Q Consensus        71 ~~L~   74 (77)
                      +.|+
T Consensus       151 r~Lk  154 (229)
T d1zx0a1         151 RLLK  154 (229)
T ss_dssp             HHEE
T ss_pred             HHcC
Confidence            8775

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.43  E-value=4.4e-05  Score=50.28  Aligned_cols=63  Identities=6%  Similarity=-0.159  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|+++.   .+...+.+|...+.++.+..||.+++...++|..+           ...++.+++..|+
T Consensus       104 VDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~-----------~~~~l~~~~r~LK  169 (230)
T d1g8sa_         104 IEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQ-----------AEILIKNAKWFLK  169 (230)
T ss_dssp             EESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH-----------HHHHHHHHHHHEE
T ss_pred             EeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccchHH-----------HHHHHHHHHHhcc
Confidence            599999999998774   34567888986666678888998887776665533           2456666666664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=4.6e-05  Score=51.73  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +++|+++++.|+++.      ...++..+|. ..+   +++||.|+|+.++.++.+         +..+.+|++++++|+
T Consensus        91 it~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~-~~~---~~~fD~i~si~~~eh~~~---------~~~~~~~~~~~r~Lk  157 (285)
T d1kpga_          91 LTLSKNQANHVQQLVANSENLRSKRVLLAGW-EQF---DEPVDRIVSIGAFEHFGH---------ERYDAFFSLAHRLLP  157 (285)
T ss_dssp             EESCHHHHHHHHHHHHTCCCCSCEEEEESCG-GGC---CCCCSEEEEESCGGGTCT---------TTHHHHHHHHHHHSC
T ss_pred             EeccHHHHHHHHHHHHhhhhhhhhHHHHhhh-hcc---cccccceeeehhhhhcCc---------hhHHHHHHHHHhhcC
Confidence            479999999998773      1236777776 334   579999999999988732         446679999999986


Q ss_pred             h
Q psy4109          75 S   75 (77)
Q Consensus        75 ~   75 (77)
                      .
T Consensus       158 p  158 (285)
T d1kpga_         158 A  158 (285)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=2.1e-05  Score=52.78  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.|++.|++|.    ...+++++|+..  ++.+++||.|+++...+              .+..++..+.+.|+
T Consensus       148 vDis~~av~~A~~na~~n~~~~~~~~~d~~~--~~~~~~fD~V~ani~~~--------------~l~~l~~~~~~~Lk  209 (254)
T d2nxca1         148 VDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLYAE--------------LHAALAPRYREALV  209 (254)
T ss_dssp             EESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECCHH--------------HHHHHHHHHHHHEE
T ss_pred             EECChHHHHHHHHHHHHcCCceeEEeccccc--cccccccchhhhccccc--------------cHHHHHHHHHHhcC
Confidence            599999999998753    456789998733  45678999999986543              34556777777665

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=3.4e-05  Score=49.99  Aligned_cols=47  Identities=9%  Similarity=-0.090  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|++++|++.|+++.     .+..++++|.. ..++.+++||.|++..+++++
T Consensus       106 id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~-~~~~~~~~fD~I~~~~~~~~~  157 (213)
T d1dl5a1         106 VEYSRKICEIAKRNVERLGIENVIFVCGDGY-YGVPEFSPYDVIFVTVGVDEV  157 (213)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCGGGCCEEEEEECSBBSCC
T ss_pred             eecchhhHHHhhhhHhhhcccccccccCchH-HccccccchhhhhhhccHHHh
Confidence            589999999999874     23467889974 566678899999999988655

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.14  E-value=6.3e-05  Score=48.76  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l~~   71 (77)
                      +|+|+.|++.|.++.     .+..++++|+ ..++  |.++++|.|+......|.....     ..+||  ..+++.+++
T Consensus        59 iD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da-~~l~~~~~~~~~d~v~i~fp~P~~k~~h-----~k~Rl~~~~~l~~~~r  132 (204)
T d2fcaa1          59 IELFKSVIVTAVQKVKDSEAQNVKLLNIDA-DTLTDVFEPGEVKRVYLNFSDPWPKKRH-----EKRRLTYSHFLKKYEE  132 (204)
T ss_dssp             ECSCHHHHHHHHHHHHHSCCSSEEEECCCG-GGHHHHCCTTSCCEEEEESCCCCCSGGG-----GGGSTTSHHHHHHHHH
T ss_pred             eecchHHHHHHHHHHHHHhccCchhcccch-hhhhcccCchhhhccccccccccchhhh-----cchhhhHHHHHHHHHH
Confidence            699999999987653     3578899997 5566  8899999999988877764331     12222  478888888


Q ss_pred             HHhh
Q psy4109          72 CLWS   75 (77)
Q Consensus        72 ~L~~   75 (77)
                      .|+.
T Consensus       133 ~Lkp  136 (204)
T d2fcaa1         133 VMGK  136 (204)
T ss_dssp             HHTT
T ss_pred             hCCC
Confidence            8863

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00025  Score=47.80  Aligned_cols=41  Identities=27%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHhcC--------CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE--------VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--------~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|++++|++.|+++.        .+..++++|+. ..++.+++||+||.-
T Consensus       127 ~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~-~~~~~~~~fDaV~ld  175 (264)
T d1i9ga_         127 YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA-DSELPDGSVDRAVLD  175 (264)
T ss_dssp             ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG-GCCCCTTCEEEEEEE
T ss_pred             ecCCHHHHHHHHHhhhhhccCCCceEEEEecccc-cccccCCCcceEEEe
Confidence            589999999999763        24578999984 578899999999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.94  E-value=0.0002  Score=46.31  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHH-HHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRL-YKFFSSLFAC   72 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l-~~~~~~l~~~   72 (77)
                      +|+|+.|+..|.++.     .++.++++|+ ..++  |.++++|.|+.+.---|....    |.-.+-+ ..+|+.++++
T Consensus        61 id~~~~~v~~a~~~~~~~~l~Ni~~~~~da-~~l~~~~~~~~~~~i~i~fPdPw~K~~----h~krRl~~~~~l~~~~~~  135 (204)
T d1yzha1          61 IDIQKSVLSYALDKVLEVGVPNIKLLWVDG-SDLTDYFEDGEIDRLYLNFSDPWPKKR----HEKRRLTYKTFLDTFKRI  135 (204)
T ss_dssp             EESCHHHHHHHHHHHHHHCCSSEEEEECCS-SCGGGTSCTTCCSEEEEESCCCCCSGG----GGGGSTTSHHHHHHHHHH
T ss_pred             EeccHHHHHHHHHhhhhhccccceeeecCH-HHHhhhccCCceehhcccccccccchh----hhhhhhhHHHHHHHHHHh
Confidence            589999999987653     3578999997 4566  789999999988766665332    2222222 5788888888


Q ss_pred             Hhh
Q psy4109          73 LWS   75 (77)
Q Consensus        73 L~~   75 (77)
                      |+.
T Consensus       136 Lkp  138 (204)
T d1yzha1         136 LPE  138 (204)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            763

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.93  E-value=0.00028  Score=45.70  Aligned_cols=41  Identities=12%  Similarity=0.194  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+++++++.|+++....+++++|+. .+   ++.||.|++|.=+
T Consensus        77 vDid~~a~~~ar~N~~~~~~~~~D~~-~l---~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          77 FDIDPDAIETAKRNCGGVNFMVADVS-EI---SGKYDTWIMNPPF  117 (197)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCGG-GC---CCCEEEEEECCCC
T ss_pred             cccCHHHHHHHHHccccccEEEEehh-hc---CCcceEEEeCccc
Confidence            59999999999999888899999984 44   4789999999654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.89  E-value=0.00071  Score=44.39  Aligned_cols=61  Identities=15%  Similarity=0.018  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+ |+|++.|+++.      ....++.+|..+  |. +..||++++..++|.+.+         +....+|++++++|+
T Consensus       111 ~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~--~~-p~~~D~v~~~~vLh~~~d---------~~~~~lL~~i~~~Lk  177 (256)
T d1qzza2         111 VEL-AGPAERARRRFADAGLADRVTVAEGDFFK--PL-PVTADVVLLSFVLLNWSD---------EDALTILRGCVRALE  177 (256)
T ss_dssp             EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CC-SCCEEEEEEESCGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             ecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc--cc-cccchhhhccccccccCc---------HHHHHHHHHHHhhcC
Confidence            476 78998887663      124677788643  33 345999999999987743         455678999999886

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.00072  Score=42.85  Aligned_cols=36  Identities=11%  Similarity=0.128  Sum_probs=28.1

Q ss_pred             CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          30 PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        30 Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      |...+.||+|+|..||.|+.         ++..++.+++|+++|+
T Consensus       127 ~~~~~~fDvI~CRNVLiYf~---------~~~~~~vl~~l~~~L~  162 (193)
T d1af7a2         127 YNVPGPFDAIFCRNVMIYFD---------KTTQEDILRRFVPLLK  162 (193)
T ss_dssp             CCCCCCEEEEEECSSGGGSC---------HHHHHHHHHHHGGGEE
T ss_pred             cCCCCCccEEEeehhHHhcC---------HHHHHHHHHHHHHHhC
Confidence            34568899999999999984         3556678888888775

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=9.3e-05  Score=50.64  Aligned_cols=46  Identities=15%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHhcC--------------CCCcEEEccCCCCCCCCCCceee-eeeccchhh
Q psy4109           1 MKKNAFYTNVARDRE--------------VEGDLVLSDLGQGVPFRAGAFDG-AISISALQW   47 (77)
Q Consensus         1 iDiS~~ML~~A~~r~--------------~~~~~~~~D~~~~lPf~~~sFD~-v~s~~~l~w   47 (77)
                      +|+|++|++.|+++.              ...+++++|+ ..+||.+..||+ |+.+..+.+
T Consensus       181 id~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~~~~~~~~~~~advi~~~~~~f  241 (328)
T d1nw3a_         181 VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-LSEEWRERIANTSVIFVNNFAF  241 (328)
T ss_dssp             EECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-TSHHHHHHHHHCSEEEECCTTT
T ss_pred             EeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-cccccccccCcceEEEEcceec
Confidence            589999999987641              2468999998 578998888865 444333333

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00031  Score=45.78  Aligned_cols=47  Identities=11%  Similarity=-0.042  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|++++|++.|+++.          ....++.+|. ...++.+++||.|++..+++++
T Consensus       107 ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~-~~~~~~~~~fD~I~~~~~~~~i  163 (224)
T d1i1na_         107 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG-RMGYAEEAPYDAIHVGAAAPVV  163 (224)
T ss_dssp             EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG-GGCCGGGCCEEEEEECSBBSSC
T ss_pred             EcCCHHHHHHHHHhccccCcccccccceEEEEeec-ccccchhhhhhhhhhhcchhhc
Confidence            589999999998763          1346788996 4567788999999999988654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.65  E-value=0.00057  Score=44.01  Aligned_cols=62  Identities=10%  Similarity=-0.173  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|++|++.|+++.   .+..++.+|+ ...+..+..+|.+...+ .+.+.           ...+.++.++++.|+
T Consensus        86 vDis~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~~~~~~~~vd~v~~~~~~~-----------~~~~~~l~~~~~~Lk  151 (209)
T d1nt2a_          86 VEYSAKPFEKLLELVRERNNIIPLLFDA-SKPWKYSGIVEKVDLIYQDIAQK-----------NQIEILKANAEFFLK  151 (209)
T ss_dssp             ECCCHHHHHHHHHHHHHCSSEEEECSCT-TCGGGTTTTCCCEEEEEECCCST-----------THHHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHHhhccCCceEEEeec-cCccccccccceEEEEEecccCh-----------hhHHHHHHHHHHHhc
Confidence            699999999997664   4567888997 45666665555544331 12111           223467788887775

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00082  Score=45.32  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+..++.|+++.    . +.+++++|+.+  |+.++.||.|+||.
T Consensus       138 vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~--~~~~~~fDlIvsNP  183 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS--ALAGQQFAMIVSNP  183 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG--GGTTCCEEEEEECC
T ss_pred             ccchhHHHhHHHHHHHHhCcccceeeeccccc--ccCCCceeEEEecc
Confidence            599999999999774    2 46899999854  55678999999995

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0016  Score=43.92  Aligned_cols=48  Identities=17%  Similarity=0.068  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHhc----C--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109           1 MKKNAFYTNVARDR----E--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN   50 (77)
Q Consensus         1 iDiS~~ML~~A~~r----~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d   50 (77)
                      +|.|+ |++.|+++    +  ....++++|+ ..+++++++||.|+|....+.+..
T Consensus        67 vd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~-~~l~~~~~~~D~i~se~~~~~~~~  120 (328)
T d1g6q1_          67 VDMSS-IIEMAKELVELNGFSDKITLLRGKL-EDVHLPFPKVDIIISEWMGYFLLY  120 (328)
T ss_dssp             EESST-HHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSSSCEEEEEECCCBTTBST
T ss_pred             EeCCH-HHHHHHHHHHHhCccccceEEEeeh-hhccCcccceeEEEEEecceeecc
Confidence            46775 66777654    2  1347899998 679999999999999888776644

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.16  E-value=0.0019  Score=42.93  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|++++|++.|+++.      .+.++.++|+.+.  +.+++||+|+..
T Consensus       116 vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~~~fD~V~ld  161 (250)
T d1yb2a1         116 VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIAD  161 (250)
T ss_dssp             ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--cccceeeeeeec
Confidence            589999999999874      1358899998543  468899999875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.85  E-value=0.0016  Score=42.54  Aligned_cols=47  Identities=19%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+++++++.|+++.   .+..++.+|.....| ..+.||.|+...++.++
T Consensus        98 iE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-~~~pfD~Iiv~~a~~~i  147 (224)
T d1vbfa_          98 VEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL  147 (224)
T ss_dssp             EESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred             ccccHHHHHHHHHHHhcccccccccCchhhcch-hhhhHHHHHhhcchhhh
Confidence            589999999998774   346889999644444 57889999999887544

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.0032  Score=42.31  Aligned_cols=43  Identities=9%  Similarity=-0.007  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+|++-++.|++|.    .  ...+..+|..+.++...+.||.|+||.
T Consensus       139 ~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP  187 (271)
T d1nv8a_         139 TDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP  187 (271)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred             chhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence            599999999999873    2  135677887655665678999999996

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0043  Score=41.49  Aligned_cols=64  Identities=13%  Similarity=0.015  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHh----cCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109           1 MKKNAFYTNVARD----REV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus         1 iDiS~~ML~~A~~----r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      +|+|+.| ..|++    ++.  ...++++|+ +.++++.++||.|+|....+++.+.        ..++.++..+++.|+
T Consensus        62 vd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~-~~~~~~~~~~D~ivs~~~~~~l~~e--------~~~~~~l~~~~r~Lk  131 (316)
T d1oria_          62 IECSSIS-DYAVKIVKANKLDHVVTIIKGKV-EEVELPVEKVDIIISEWMGYCLFYE--------SMLNTVLHARDKWLA  131 (316)
T ss_dssp             EECSTTH-HHHHHHHHHTTCTTTEEEEESCT-TTCCCSSSCEEEEEECCCBBTBTBT--------CCHHHHHHHHHHHEE
T ss_pred             EcCcHHH-hhhhhHHHHhCCccccceEeccH-HHcccccceeEEEeeeeeeeeeccH--------HHHHHHHHHHHhcCC
Confidence            4778755 33332    232  357899997 6799999999999998877666432        234556666666654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0096  Score=39.44  Aligned_cols=48  Identities=13%  Similarity=0.041  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHH---hcC--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109           1 MKKNAFYTNVAR---DRE--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLC   49 (77)
Q Consensus         1 iDiS~~ML~~A~---~r~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~   49 (77)
                      +|+|+.|...++   +++  ....++++|+ +.+++.++.||.|+|....+.+.
T Consensus        64 id~s~~~~~a~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~D~Ivse~~~~~~~  116 (311)
T d2fyta1          64 VDQSEILYQAMDIIRLNKLEDTITLIKGKI-EEVHLPVEKVDVIISEWMGYFLL  116 (311)
T ss_dssp             EESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSCSCEEEEEECCCBTTBT
T ss_pred             EeCHHHHHHHHHHHHHhCCCccceEEEeeH-HHhcCccccceEEEEeeeeeecc
Confidence            478888864433   222  2357899997 67999999999999987766553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.33  E-value=0.012  Score=37.21  Aligned_cols=42  Identities=10%  Similarity=0.041  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+|+.+++.|+++.    ...+++.+|.. .+   ++.||.|+++.=+.
T Consensus        75 vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~-~~---~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1          75 VEVDKEAVDVLIENLGEFKGKFKVFIGDVS-EF---NSRVDIVIMNPPFG  120 (201)
T ss_dssp             EESCHHHHHHHHHHTGGGTTSEEEEESCGG-GC---CCCCSEEEECCCCS
T ss_pred             EcCcHHHHHHHHHHHHHcCCCceEEECchh-hh---CCcCcEEEEcCccc
Confidence            599999999999874    23478888863 33   56799999997543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.14  E-value=0.0099  Score=38.41  Aligned_cols=47  Identities=15%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL   48 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~   48 (77)
                      +|+.++|.+.|+++.     .+..++++|..+..| ..+.||.|+...++..+
T Consensus       107 ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-~~~pfD~Iiv~~a~~~i  158 (215)
T d1jg1a_         107 IERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-PKAPYDVIIVTAGAPKI  158 (215)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECSBBSSC
T ss_pred             EeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-ccCcceeEEeecccccC
Confidence            478899999998774     346899999755444 58889999999887433

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.01  E-value=0.031  Score=36.11  Aligned_cols=43  Identities=7%  Similarity=-0.192  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHhcCC---CCcEEEccCCC--CCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV---EGDLVLSDLGQ--GVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~--~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.++++..   +...+..|...  ..+.....+|+|++..
T Consensus       104 VD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~  151 (227)
T d1g8aa_         104 IEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             EESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             EeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEc
Confidence            5999999999987742   34567777643  2334567899998764

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.022  Score=37.18  Aligned_cols=45  Identities=9%  Similarity=-0.011  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHhcC----CC--CcEEEccCCCCC-----CCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE----VE--GDLVLSDLGQGV-----PFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~--~~~~~~D~~~~l-----Pf~~~sFD~v~s~~~l   45 (77)
                      +|+|+++++.|+++.    ..  ..+++.+....+     ...++.||.|+||.=+
T Consensus        91 ~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY  146 (250)
T d2h00a1          91 TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPF  146 (250)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred             eecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcc
Confidence            599999999999874    12  245555432211     1246789999999843

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=93.91  E-value=0.0044  Score=42.16  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~   68 (77)
                      +||.+++++.|++..          +..+++.+|+.+-+.-.++.||+|+.-..     |+.. ...|...|  ++||+.
T Consensus       107 VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~-----dp~~-~~~~~~~L~t~eF~~~  180 (312)
T d1uira_         107 VDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLT-----DPVG-EDNPARLLYTVEFYRL  180 (312)
T ss_dssp             EESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECC-----CCBS-TTCGGGGGSSHHHHHH
T ss_pred             ecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCC-----Cccc-ccchhhhhhhHHHHHH
Confidence            589999999998764          23478889975444445788999997642     2111 12344444  678888


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      +.++|+
T Consensus       181 ~~~~L~  186 (312)
T d1uira_         181 VKAHLN  186 (312)
T ss_dssp             HHHTEE
T ss_pred             HHHhcC
Confidence            888775

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.89  E-value=0.011  Score=38.21  Aligned_cols=45  Identities=9%  Similarity=-0.085  Sum_probs=34.8

Q ss_pred             CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109           1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQ   46 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~   46 (77)
                      +|+++++++.|+++.          .+..++++|..+ .....+.||.|+...++.
T Consensus       116 iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~-~~~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         116 IEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             EESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBS
T ss_pred             EecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc-ccccccceeeEEEEeech
Confidence            478999999998762          245789999744 444678999999998874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.73  E-value=0.0078  Score=40.07  Aligned_cols=64  Identities=22%  Similarity=0.229  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHhcC---------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--H
Q psy4109           1 MKKNAFYTNVARDRE---------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--Y   63 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~   63 (77)
                      +||.|++++.|++-.               +..+++.+|+..-+ -.++.||+|+.-..     ++    ..++..|  +
T Consensus       101 VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~~~~~yDvIi~D~~-----~~----~~~~~~L~t~  170 (276)
T d1mjfa_         101 VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-KNNRGFDVIIADST-----DP----VGPAKVLFSE  170 (276)
T ss_dssp             EESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-HHCCCEEEEEEECC-----CC----C-----TTSH
T ss_pred             ecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-hccCCCCEEEEeCC-----CC----CCCcccccCH
Confidence            589999999998632               23478888863222 24678999997543     11    1234444  6


Q ss_pred             HHHHHHHHHHh
Q psy4109          64 KFFSSLFACLW   74 (77)
Q Consensus        64 ~~~~~l~~~L~   74 (77)
                      +||+.+.++|+
T Consensus       171 eF~~~~~~~L~  181 (276)
T d1mjfa_         171 EFYRYVYDALN  181 (276)
T ss_dssp             HHHHHHHHHEE
T ss_pred             HHHHhhHhhcC
Confidence            78999888875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.01  Score=40.17  Aligned_cols=66  Identities=17%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +||.+++++.|++-.         +..+++.+|+.+-+--.++.||+|+.-..=     +   ...|...|  ++||+.+
T Consensus       119 VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d-----p---~~~~~~~L~t~efy~~~  190 (295)
T d1inla_         119 CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD-----P---TAGQGGHLFTEEFYQAC  190 (295)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC------------------CCSHHHHHHH
T ss_pred             ecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCC-----C---CcCchhhhccHHHHHHH
Confidence            589999999998753         234788888654454467889999987432     1   12233444  7889988


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      .++|+
T Consensus       191 ~~~L~  195 (295)
T d1inla_         191 YDALK  195 (295)
T ss_dssp             HHHEE
T ss_pred             HhhcC
Confidence            88875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=93.08  E-value=0.023  Score=38.25  Aligned_cols=43  Identities=9%  Similarity=-0.026  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCC---CCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQ---GVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~---~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.|++.|+++.     .+.+++++|+.+   .++...+.||.|++..
T Consensus       173 vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp  223 (318)
T d1wxxa2         173 VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  223 (318)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence            599999999999773     235788898632   2455678999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=92.36  E-value=0.048  Score=35.90  Aligned_cols=39  Identities=13%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s   41 (77)
                      +|+|++|++.|+++..      +..+..+|+.  .++....||.|+.
T Consensus       134 vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~--~~~~~~~~D~V~~  178 (266)
T d1o54a_         134 YEKREEFAKLAESNLTKWGLIERVTIKVRDIS--EGFDEKDVDALFL  178 (266)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG--GCCSCCSEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHhccccCcEEEecccc--ccccccceeeeEe
Confidence            5999999999998742      2355666753  3567888998874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.041  Score=37.39  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHhcC----------------CCCcEEEccCCCCC-CCCCCceeeeee
Q psy4109           1 MKKNAFYTNVARDRE----------------VEGDLVLSDLGQGV-PFRAGAFDGAIS   41 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----------------~~~~~~~~D~~~~l-Pf~~~sFD~v~s   41 (77)
                      +|++++|++.|+++.                .+..+.++|+.... .+.+++||+||.
T Consensus       129 ~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         129 FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             ecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee
Confidence            589999999999763                13467888974322 246789999985

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.00  E-value=0.017  Score=39.51  Aligned_cols=65  Identities=22%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +||.+++++.|++-.+         ..+++.+|+.+-+--.++.||+|+.-..     ++    ..++..|  ++||+.+
T Consensus       136 VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~-----dp----~~~~~~L~t~eFy~~~  206 (312)
T d2b2ca1         136 CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSS-----DP----VGPAESLFGQSYYELL  206 (312)
T ss_dssp             ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------HHHHH
T ss_pred             EcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCC-----CC----CCcchhhhhHHHHHHH
Confidence            5899999999987542         3467777864333335788999998753     22    1233444  7788888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      .++|+
T Consensus       207 ~~~L~  211 (312)
T d2b2ca1         207 RDALK  211 (312)
T ss_dssp             HHHEE
T ss_pred             HhhcC
Confidence            88875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.35  E-value=0.013  Score=35.28  Aligned_cols=43  Identities=16%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+++++++.++++..      ..+++++|+.+.++...+.||.|+...
T Consensus        43 ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP   91 (152)
T d2esra1          43 VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP   91 (152)
T ss_dssp             ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             ehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence            5899999999987731      257899997554667789999998763

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.80  E-value=0.023  Score=38.26  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCC---CCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQ---GVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~---~lPf~~~sFD~v~s~~   43 (77)
                      +|+|+.+++.|+++.    .  ..+++++|+.+   .++..+..||.|++..
T Consensus       174 vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~Dp  225 (324)
T d2as0a2         174 IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP  225 (324)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCC
Confidence            599999999998774    2  24788888632   2345678999999864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.75  E-value=0.077  Score=35.43  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS   68 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~   68 (77)
                      +||.+++++.|++-.         +..+++.+|..+-+. ..++.||+|+.-..     |+.  +  ++..|  ++||+.
T Consensus       110 VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~-----dp~--~--~~~~L~t~eF~~~  180 (290)
T d1xj5a_         110 CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSS-----DPI--G--PAKELFEKPFFQS  180 (290)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCC-----CTT--S--GGGGGGSHHHHHH
T ss_pred             ecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCC-----CCC--C--cchhhCCHHHHHH
Confidence            589999999998753         345788888644342 24568999998753     221  1  22233  568888


Q ss_pred             HHHHHh
Q psy4109          69 LFACLW   74 (77)
Q Consensus        69 l~~~L~   74 (77)
                      +.++|+
T Consensus       181 ~~~~L~  186 (290)
T d1xj5a_         181 VARALR  186 (290)
T ss_dssp             HHHHEE
T ss_pred             HHHhcC
Confidence            888875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.66  E-value=0.074  Score=35.19  Aligned_cols=67  Identities=9%  Similarity=-0.011  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA   71 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~   71 (77)
                      +||.+++++.|++-.         +..+++.+|+.+-+--.++.||+|+.-..     ++.+.  ...=.-++||+.+.+
T Consensus       105 VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~-----~p~~~--~~~L~t~eFy~~~~~  177 (274)
T d1iy9a_         105 VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDST-----EPVGP--AVNLFTKGFYAGIAK  177 (274)
T ss_dssp             EESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCS-----SCCSC--CCCCSTTHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCC-----CCCCc--chhhccHHHHHHHHh
Confidence            589999999998753         23478888864333345788999998853     22111  111113568888877


Q ss_pred             HHh
Q psy4109          72 CLW   74 (77)
Q Consensus        72 ~L~   74 (77)
                      +|+
T Consensus       178 ~L~  180 (274)
T d1iy9a_         178 ALK  180 (274)
T ss_dssp             HEE
T ss_pred             hcC
Confidence            775

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.039  Score=36.88  Aligned_cols=65  Identities=18%  Similarity=0.116  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109           1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL   69 (77)
Q Consensus         1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l   69 (77)
                      +||.+++++.|++-.         +..+++.+|+.+-+--.++.||+|++-.. .    +.  +  ++..|  ++||+.+
T Consensus       108 vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~-~----p~--~--~~~~L~t~eF~~~~  178 (285)
T d2o07a1         108 CEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSS-D----PM--G--PAESLFKESYYQLM  178 (285)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC--------------------CHHHHHH
T ss_pred             ccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCC-C----CC--C--cccccccHHHHHHH
Confidence            489999999998754         34578888864433335678999998753 1    11  1  22333  4688888


Q ss_pred             HHHHh
Q psy4109          70 FACLW   74 (77)
Q Consensus        70 ~~~L~   74 (77)
                      .++|+
T Consensus       179 ~~~L~  183 (285)
T d2o07a1         179 KTALK  183 (285)
T ss_dssp             HHHEE
T ss_pred             HHhcC
Confidence            88775

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.13  E-value=0.31  Score=31.28  Aligned_cols=46  Identities=13%  Similarity=0.094  Sum_probs=34.6

Q ss_pred             CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109          17 EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS   75 (77)
Q Consensus        17 ~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~   75 (77)
                      ..+++.+|+-++.|    .+|+++...++|.+.|         +.-.+.+++++++|+.
T Consensus       124 rv~~~~gD~f~~~p----~aD~~~l~~vLHdw~d---------~~~~~iL~~~~~al~p  169 (244)
T d1fp2a2         124 NLTYVGGDMFTSIP----NADAVLLKYILHNWTD---------KDCLRILKKCKEAVTN  169 (244)
T ss_dssp             TEEEEECCTTTCCC----CCSEEEEESCGGGSCH---------HHHHHHHHHHHHHHSG
T ss_pred             ceEEEecCcccCCC----CCcEEEEEeecccCCh---------HHHHHHHHHHHHHcCc
Confidence            45889999854332    4799999999998855         4456788999998853

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.51  E-value=0.35  Score=31.38  Aligned_cols=40  Identities=13%  Similarity=0.062  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~   42 (77)
                      +|+||.+++.++++.    .  ...++++|+. .++ ..+.||.|+.+
T Consensus       136 vd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~-~~~-~~~~~D~Ii~~  181 (260)
T d2frna1         136 IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFP-GENIADRILMG  181 (260)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCC-CCSCEEEEEEC
T ss_pred             ecCCHHHHHHHHHHHHHhCCCceEEEEEcchH-Hhc-cCCCCCEEEEC
Confidence            599999999998763    2  2478999974 454 46789999976

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=83.51  E-value=0.19  Score=34.65  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             CCCCceeeeeeccchhhhcc
Q psy4109          31 FRAGAFDGAISISALQWLCN   50 (77)
Q Consensus        31 f~~~sFD~v~s~~~l~w~~d   50 (77)
                      |+++|.+.++|+.++||+..
T Consensus       135 fP~~Slh~~~Ss~alHWLS~  154 (359)
T d1m6ex_         135 FPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             SCTTCBSCEEEESCTTBCSS
T ss_pred             CCCCceEEeeehhhhhhhhc
Confidence            68999999999999999864

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=81.82  E-value=0.58  Score=29.95  Aligned_cols=45  Identities=20%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109          17 EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW   74 (77)
Q Consensus        17 ~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~   74 (77)
                      ..+++.+|+-+++|    ..|+++...++|.+.|         +.-.+.+++++++|+
T Consensus       125 ri~~~~gd~~~~~p----~~D~~~l~~vLh~~~d---------e~~~~iL~~~~~aL~  169 (244)
T d1fp1d2         125 GIEHVGGDMFASVP----QGDAMILKAVCHNWSD---------EKCIEFLSNCHKALS  169 (244)
T ss_dssp             TEEEEECCTTTCCC----CEEEEEEESSGGGSCH---------HHHHHHHHHHHHHEE
T ss_pred             CeEEecCCcccccc----cceEEEEehhhhhCCH---------HHHHHHHHHHHHHcC
Confidence            35788899866554    2499999999998754         445568888888875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.91  E-value=0.073  Score=36.11  Aligned_cols=42  Identities=10%  Similarity=0.067  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHhcC----C---CCcEEEccCCCCC---CCCCCceeeeeec
Q psy4109           1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGV---PFRAGAFDGAISI   42 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~l---Pf~~~sFD~v~s~   42 (77)
                      +|+|+.+++.|+++.    .   ..+++++|+-+-+   ..+...||+||..
T Consensus       160 VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD  211 (309)
T d2igta1         160 VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  211 (309)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             EeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence            699999999999873    1   2478999863222   1246789999975

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=80.10  E-value=0.86  Score=29.59  Aligned_cols=43  Identities=14%  Similarity=0.019  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109           1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISAL   45 (77)
Q Consensus         1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l   45 (77)
                      +|+++.|++.|+.+.    ......++|.-.  ......||.|+++.=+
T Consensus       152 ~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~fD~vi~NPPy  198 (328)
T d2f8la1         152 VDVDDLLISLALVGADLQRQKMTLLHQDGLA--NLLVDPVDVVISDLPV  198 (328)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCCEEEESCTTS--CCCCCCEEEEEEECCC
T ss_pred             ecccHHHHHHHHHHHHHhhhhhhhhcccccc--ccccccccccccCCCC
Confidence            489999999998663    345677888533  3456789999999744

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=80.08  E-value=0.2  Score=30.69  Aligned_cols=43  Identities=5%  Similarity=-0.102  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109           1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISIS   43 (77)
Q Consensus         1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~   43 (77)
                      +|+++..++.++++.     .+..++++|+..-+...+..||.||...
T Consensus        72 VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP  119 (183)
T d2fpoa1          72 IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP  119 (183)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred             EEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcC
Confidence            589999999998763     1347788886544555688899999874