Psyllid ID: psy4110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MYANSGKSSISHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDGIM
cccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
ccccccccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHHHHHHHccHcccccccccccccHHHcccEccccEEcccEcEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
myansgkssishtWLKTRItlvgqpnyfqhRRDIETLIEGIRIAFNVSASAAFkkynsrplltpmpgcamfeLFSDEYWECSLRHFtftiyhptstckmgpptdpeavvdprlrvygvdglrvidasimpiivsgnpnaptimigekGADMIkedwgyvntkpfddgim
myansgkssishtwlkTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDAsimpiivsgnpnaPTIMIGEKGADMIKEDWGYVntkpfddgim
MYANSGKSSISHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDGIM
**********SHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMG****PEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNT********
******K**********RITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWG************
**********SHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDGIM
***NSGKSSISHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNT********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYANSGKSSISHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDGIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query169 2.2.26 [Sep-21-2011]
P18172625 Glucose dehydrogenase [ac no N/A 0.781 0.211 0.477 1e-31
P18173625 Glucose dehydrogenase [ac no N/A 0.781 0.211 0.469 1e-31
Q8NE62594 Choline dehydrogenase, mi yes N/A 0.792 0.225 0.455 4e-26
Q6UPE0599 Choline dehydrogenase, mi yes N/A 0.792 0.223 0.448 2e-25
Q8BJ64596 Choline dehydrogenase, mi yes N/A 0.792 0.224 0.420 2e-23
B3PTE0549 Choline dehydrogenase OS= yes N/A 0.786 0.242 0.425 4e-22
Q1MJU4549 Choline dehydrogenase OS= yes N/A 0.786 0.242 0.411 5e-22
Q2KB43549 Choline dehydrogenase OS= yes N/A 0.786 0.242 0.425 5e-22
Q1RFM3562 Choline dehydrogenase OS= yes N/A 0.710 0.213 0.453 2e-21
B7MCD0562 Choline dehydrogenase OS= yes N/A 0.710 0.213 0.453 2e-21
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 Back     alignment and function desciption
 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 84/132 (63%)

Query: 26  NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
           NY    RD++TL+EGI+ A  +S ++  K+Y  R   T + GC      SD YWEC++R 
Sbjct: 478 NYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQ 537

Query: 86  FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
            T    H   +CKMGP  DP AVV+  LRV+GV GLRV+D SIMP + +GN +AP +MI 
Sbjct: 538 NTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIA 597

Query: 146 EKGADMIKEDWG 157
           EKGA ++K  WG
Sbjct: 598 EKGAYLLKRAWG 609

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 Back     alignment and function description
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2 SV=2 Back     alignment and function description
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh PE=1 SV=1 Back     alignment and function description
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1 SV=1 Back     alignment and function description
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=betA PE=3 SV=2 Back     alignment and function description
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=betA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
193664529 619 PREDICTED: glucose dehydrogenase [accept 0.786 0.214 0.812 2e-62
189238523 624 PREDICTED: similar to glucose dehydrogen 0.792 0.214 0.738 8e-55
270009082 622 hypothetical protein TcasGA2_TC015717 [T 0.792 0.215 0.738 8e-55
357631698 616 hypothetical protein KGM_15608 [Danaus p 0.786 0.215 0.706 1e-52
307172020 626 Glucose dehydrogenase [acceptor] [Campon 0.781 0.210 0.689 2e-51
322796408 612 hypothetical protein SINV_07596 [Solenop 0.840 0.232 0.662 2e-51
383860468 621 PREDICTED: glucose dehydrogenase [accept 0.840 0.228 0.655 8e-51
347970621 623 AGAP003783-PA [Anopheles gambiae str. PE 0.792 0.215 0.671 9e-51
347970619 695 AGAP003783-PB [Anopheles gambiae str. PE 0.792 0.192 0.671 1e-50
312371729 624 hypothetical protein AND_21724 [Anophele 0.792 0.214 0.656 3e-50
>gi|193664529|ref|XP_001945226.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 108/133 (81%), Positives = 120/133 (90%)

Query: 24  QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
           +PNYF HR D++ L++GIRIAFNVS +AAF+KYNSRPLLTPMPGC  FELFSDEYWEC+L
Sbjct: 485 EPNYFAHREDVQVLVDGIRIAFNVSNTAAFRKYNSRPLLTPMPGCKKFELFSDEYWECAL 544

Query: 84  RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
           RHFTFTIYHP  TCKMGP TDP+AVVD RLRV G+DGLRVIDASIMP I+SGNPNAP IM
Sbjct: 545 RHFTFTIYHPAGTCKMGPDTDPDAVVDHRLRVRGIDGLRVIDASIMPNIISGNPNAPVIM 604

Query: 144 IGEKGADMIKEDW 156
           IGEKGADMIK+DW
Sbjct: 605 IGEKGADMIKKDW 617

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom:

>gi|189238523|ref|XP_972430.2| PREDICTED: similar to glucose dehydrogenase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270009082|gb|EFA05530.1| hypothetical protein TcasGA2_TC015717 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357631698|gb|EHJ79167.1| hypothetical protein KGM_15608 [Danaus plexippus] Back     alignment and taxonomy information
>gi|307172020|gb|EFN63614.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322796408|gb|EFZ18942.1| hypothetical protein SINV_07596 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383860468|ref|XP_003705711.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|347970621|ref|XP_310332.7| AGAP003783-PA [Anopheles gambiae str. PEST] gi|333466755|gb|EAA45201.5| AGAP003783-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347970619|ref|XP_003436611.1| AGAP003783-PB [Anopheles gambiae str. PEST] gi|333466756|gb|EGK96365.1| AGAP003783-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312371729|gb|EFR19841.1| hypothetical protein AND_21724 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
FB|FBgn0030591865 CG9517 [Drosophila melanogaste 0.786 0.153 0.624 7.9e-44
FB|FBgn0030590703 CG9518 [Drosophila melanogaste 0.775 0.186 0.610 2e-38
FB|FBgn0030598626 CG9503 [Drosophila melanogaste 0.781 0.210 0.575 4.5e-37
FB|FBgn0030592726 CG9514 [Drosophila melanogaste 0.816 0.190 0.536 6.1e-37
FB|FBgn0030589622 CG9519 [Drosophila melanogaste 0.792 0.215 0.514 1.6e-32
FB|FBgn0030596633 CG12398 [Drosophila melanogast 0.775 0.206 0.488 3.8e-32
FB|FBgn0030593623 CG9512 [Drosophila melanogaste 0.781 0.211 0.507 1.2e-30
FB|FBgn0030588621 CG9521 [Drosophila melanogaste 0.792 0.215 0.492 2.6e-30
FB|FBgn0030587616 CG9522 [Drosophila melanogaste 0.881 0.241 0.421 4.1e-30
FB|FBgn0001112625 Gld "Glucose dehydrogenase" [D 0.781 0.211 0.469 5.4e-29
FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 470 (170.5 bits), Expect = 7.9e-44, P = 7.9e-44
 Identities = 83/133 (62%), Positives = 102/133 (76%)

Query:    25 PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLR 84
             PNYF H+ DI+ L+EGI++A NVS + AF+++ SR    P+PGC      S+EYW C ++
Sbjct:   725 PNYFAHQEDIDVLVEGIKLAINVSNTQAFQRFGSRLHNIPLPGCRHLPFQSNEYWACCIK 784

Query:    85 HFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMI 144
              FTFTIYHP  TC+MGP  D  AVVDPRLRVYGV G+RV+DASIMP IV+GNPNAP I I
Sbjct:   785 EFTFTIYHPAGTCRMGPSWDVTAVVDPRLRVYGVSGVRVVDASIMPTIVNGNPNAPVIAI 844

Query:   145 GEKGADMIKEDWG 157
             GEK +D+IKEDWG
Sbjct:   845 GEKASDLIKEDWG 857
GO:0004344 "glucose dehydrogenase activity" evidence=ISS
GO:0006066 "alcohol metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008812 "choline dehydrogenase activity" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
pfam05199139 pfam05199, GMC_oxred_C, GMC oxidoreductase 7e-43
PRK02106560 PRK02106, PRK02106, choline dehydrogenase; Validat 2e-40
TIGR01810532 TIGR01810, betA, choline dehydrogenase 4e-33
COG2303542 COG2303, BetA, Choline dehydrogenase and related f 6e-32
TIGR03970487 TIGR03970, Rv0697, dehydrogenase, Rv0697 family 5e-18
PLN02785587 PLN02785, PLN02785, Protein HOTHEAD 2e-09
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase Back     alignment and domain information 
 Score =  139 bits (351), Expect = 7e-43
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 25  PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLR 84
           PNY     D+  L   +R+A  + A+A  +     P   P+         SD+     +R
Sbjct: 22  PNYLSDPADLAALRAALRLARRILAAALVELT---PG--PVEVVPGAAEASDDEILEYIR 76

Query: 85  HFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMI 144
               T +HP  TC+MG   D   VVDP LRV+GVD LRV+DAS+ P   SGNP      +
Sbjct: 77  AAAVTSWHPMGTCRMGADPDD-GVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYAL 135

Query: 145 GEKG 148
            E+ 
Sbjct: 136 AERA 139

This domain found associated with pfam00732. Length = 139
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase Back     alignment and domain information
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family Back     alignment and domain information
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 169
KOG1238|consensus623 100.0
PF05199144 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 100.0
TIGR01810532 betA choline dehydrogenase. This enzyme is a membe 100.0
PLN02785587 Protein HOTHEAD 100.0
PRK02106560 choline dehydrogenase; Validated 100.0
COG2303542 BetA Choline dehydrogenase and related flavoprotei 99.97
TIGR02462544 pyranose_ox pyranose oxidase. Pyranose oxidase (al 99.89
COG1252405 Ndh NADH dehydrogenase, FAD-containing subunit [En 93.03
TIGR03169364 Nterm_to_SelD pyridine nucleotide-disulfide oxidor 91.01
PTZ00318424 NADH dehydrogenase-like protein; Provisional 90.95
>KOG1238|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.8e-47  Score=329.19  Aligned_cols=157  Identities=52%  Similarity=0.891  Sum_probs=150.5

Q ss_pred             CCCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHHh
Q psy4110           5 SGKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWEC   81 (169)
Q Consensus         5 ~~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~~   81 (169)
                      .+|+|||++.|++++   .|+|+||||++|+|++.+++|++.+.++.++.+|+++...++..+.|+|+.....+|++|+|
T Consensus       462 l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c  541 (623)
T KOG1238|consen  462 LRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWEC  541 (623)
T ss_pred             cCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHH
Confidence            479999999999985   69999999999999999999999999999999999999999988899998777899999999


Q ss_pred             hhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCCC
Q psy4110          82 SLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNT  161 (169)
Q Consensus        82 ~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~~  161 (169)
                      |+|..+.+.||++|||+||+..|+.+|||+++|||||+|||||||||||.+|++||++++||||||+|++|+++|....+
T Consensus       542 ~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~  621 (623)
T KOG1238|consen  542 FCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKD  621 (623)
T ss_pred             HHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977654

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] Back     alignment and domain information
>TIGR01810 betA choline dehydrogenase Back     alignment and domain information
>PLN02785 Protein HOTHEAD Back     alignment and domain information
>PRK02106 choline dehydrogenase; Validated Back     alignment and domain information
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02462 pyranose_ox pyranose oxidase Back     alignment and domain information
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Back     alignment and domain information
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein Back     alignment and domain information
>PTZ00318 NADH dehydrogenase-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
2jbv_A546 Crystal Structure Of Choline Oxidase Reveals Insigh 4e-19
3nne_A546 Crystal Structure Of Choline Oxidase S101a Mutant L 4e-19
3ljp_A546 Crystal Structure Of Choline Oxidase V464a Mutant L 1e-18
3fim_B566 Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu 8e-16
3q9t_A577 Crystal Structure Analysis Of Formate Oxidase Lengt 2e-12
3t37_A526 Crystal Structure Of Pyridoxine 4-Oxidase From Meso 9e-11
1cf3_A583 Glucose Oxidase From Apergillus Niger Length = 583 2e-08
1gpe_A587 Glucose Oxidase From Penicillium Amagasakiense Leng 5e-06
3red_A521 3.0 A Structure Of The Prunus Mume Hydroxynitrile L 1e-05
3gdn_A521 Almond Hydroxynitrile Lyase In Complex With Benzald 3e-05
1ju2_A536 Crystal Structure Of The Hydroxynitrile Lyase From 3e-05
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 25  PNYFQ--HRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECS 82
           P YF      D+  ++ GIR A  ++A  A  ++  R L    PG    E  +DE  +  
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 83  LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 142
           +R    T+YHP  T +MG   D  + +DP LRV GV GLRV DAS+MP  V+ NPN   +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 143 MIGEKGADMIK 153
           MIGE+ AD+I+
Sbjct: 517 MIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 Back     alignment and structure
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 Back     alignment and structure
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 Back     alignment and structure
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 Back     alignment and structure
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526 Back     alignment and structure
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583 Back     alignment and structure
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587 Back     alignment and structure
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 Back     alignment and structure
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 Back     alignment and structure
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 8e-73
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 2e-72
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 1e-71
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 5e-68
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 2e-63
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 9e-61
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 1e-59
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 1e-52
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 6e-16
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 3e-11
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 7e-11
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 Back     alignment and structure
 Score =  228 bits (583), Expect = 8e-73
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 24  QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
            P +F +  D+       ++A ++++  A K+Y +   L   PG  + +  +   W   +
Sbjct: 455 DPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNATLSQWSDYV 511

Query: 84  RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
                  +H  S+C M    +   VVD   +VYG  GLRVID SI P  VS +       
Sbjct: 512 LQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYG 570

Query: 144 IGEKGADMIKEDWG 157
           +  K AD I +D+ 
Sbjct: 571 MALKVADAILDDYA 584
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 Back     alignment and structure
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 100.0
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 100.0
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 100.0
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 100.0
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 100.0
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 100.0
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 100.0
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 100.0
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 99.97
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 99.97
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 99.95
3hyw_A430 Sulfide-quinone reductase; monotopic membrane prot 86.98
4g6h_A502 Rotenone-insensitive NADH-ubiquinone oxidoreducta 81.15
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Back     alignment and structure
Probab=100.00  E-value=8.7e-43  Score=304.85  Aligned_cols=146  Identities=32%  Similarity=0.511  Sum_probs=131.8

Q ss_pred             CCCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHHh
Q psy4110           5 SGKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWEC   81 (169)
Q Consensus         5 ~~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~~   81 (169)
                      ..|+|||+|+|++++   .|.|++|||++|.|++.++++++.+++++++++|+.+...+..   |++  ....+|++|++
T Consensus       417 ~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---P~~--~~~~sd~~~~~  491 (566)
T 3fim_B          417 ISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFD---PRL--RDPTDDAAIES  491 (566)
T ss_dssp             SSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTTTEEEESS---GGG--SCTTCHHHHHH
T ss_pred             cCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccCCccccccC---CCc--ccccchHHHHH
Confidence            578999999999974   6999999999999999999999999999999999888755442   331  13578999999


Q ss_pred             hhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q psy4110          82 SLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKED  155 (169)
Q Consensus        82 ~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~  155 (169)
                      |+|+...+.||++||||||++++..+|||++||||||+|||||||||||+++++||++|+||||||+|++|+++
T Consensus       492 ~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          492 YIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             HHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999998754349999999999999999999999999999999999999999999999975
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Back     alignment and structure
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Back     alignment and structure
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* Back     alignment and structure
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 169
d1cf3a1385 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper 4e-22
d1kdga1360 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain 3e-21
d1gpea1391 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic 2e-16
d2f5va1379 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W 1e-14
d1cf3a2196 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus 3e-14
d1gpea2196 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium 6e-14
d1ju2a2170 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond 4e-09
d1kdga2181 d.16.1.1 (A:513-693) Flavoprotein domain of flavoc 1e-04
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 89.2 bits (220), Expect = 4e-22
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 89  TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 148
            +  P   C M P  +   VVD   RVYGV GLRVID SI P  +S +       +  K 
Sbjct: 315 VVDLPVGLCSMMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKI 373

Query: 149 ADMIKEDW 156
           +D I ED+
Sbjct: 374 SDAILEDY 381
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 Back     information, alignment and structure
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 Back     information, alignment and structure
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 Back     information, alignment and structure
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
d1gpea2196 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.8
d1cf3a2196 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.79
d2f5va1379 Pyranose 2-oxidase {White-rot fungus (Peniophora s 99.78
d1ju2a2170 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 99.74
d1kdga2181 Flavoprotein domain of flavocytochrome cellobiose 99.7
d1cf3a1385 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.67
d1kdga1360 Flavoprotein domain of flavocytochrome cellobiose 99.43
d1gpea1391 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.34
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 97.9
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 97.6
d1ju2a1351 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 86.39
d2f5va2198 Pyranose 2-oxidase {White-rot fungus (Peniophora s 80.18
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.80  E-value=3.3e-20  Score=140.45  Aligned_cols=89  Identities=13%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             CCCCCCceEeeCCCC----CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHH
Q psy4110           5 SGKSSISHTWLKTRI----TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWE   80 (169)
Q Consensus         5 ~~~~SrG~v~l~s~~----~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~   80 (169)
                      .-|+|||+|+|++++    +|.|+||||++|.|++.+++|+|.+++|+++++|+.+...+.   .|++......+|++|+
T Consensus       104 l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r~~~~i~~t~~l~~~~~~e~---~Pg~~~~~~~sde~~~  180 (196)
T d1gpea2         104 LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGET---LPGYNLVQNATLSQWS  180 (196)
T ss_dssp             SSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE---ESGGGSCTTCCHHHHH
T ss_pred             cCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHHHHHHHHhhHHHHhhccccc---CCCcccCCCCCHHHHH
Confidence            459999999999986    358999999999999999999999999999999999876554   4665433346899999


Q ss_pred             hhhhcccccccccCCC
Q psy4110          81 CSLRHFTFTIYHPTST   96 (169)
Q Consensus        81 ~~ir~~~~~~~H~~GT   96 (169)
                      +|||+...+.||++||
T Consensus       181 ~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         181 DYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             HHHHHSCEECSCCBCT
T ss_pred             HHHHhcCeecccCCCC
Confidence            9999999999999998
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure