Psyllid ID: psy4130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGPALNNFKSNVPRNPPGNGDGSSGSSQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHccccccHHHHHccHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msikpediITSVITFLRKELLRDTLNAESKEGIEVAVECLCkaydipdnidpasnvdiESLFQLYYKDEVLQWysninfspteeVKIEAEKYKNlgntamqqdkpeqAVIEYSkaidcdnsnpvyycnraasnnklKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAaeldpndplyaNNMQAAMSNlnnsssasgsggvfpglsemstkvlsdpsIQQVFGElfanpgqqatatdgsntGIQALLNASQQIAAQLEQRNPELVEQIFQQFGpalnnfksnvprnppgngdgssgssq
Flexible Loop (DISEMBL)
msikpediitSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGPALNNFKSnvprnppgngdgssgssq
Low Complexity Region (SEG)
MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYannmqaamsnlnnsssasgsggVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGPALNNFKSNVPRnppgngdgssgssQ
Disordered region (IsUnstruct)
*******IITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIE*******************AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA****************************************************VFGEL***************************************VEQIFQQF***************************
Disordered Region (DISOPRED)
*****ED*ITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVL**********TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA**************************KVLSDPSIQQVFGEL**************************QI*AQLEQRNPELVEQIFQQF***************************
Disordered Region (DISEMBL)
MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL**********GVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGPALNNFKSNVPRNP************
Disordered Region (DISPRO)
*SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDN*******D*E************************EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS*********GLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGP*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALxxxxxxxxxxxxxxxxxxxxxIFQQFGPALNNFKSNVPRNPPGNGDGSSGSSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q80W98	304	Small glutamine-rich tetr	yes	N/A	0.878	0.907	0.360	2e-38
O43765	313	Small glutamine-rich tetr	yes	N/A	0.878	0.881	0.364	2e-38
Q96EQ0	304	Small glutamine-rich tetr	no	N/A	0.863	0.891	0.356	2e-38
Q8VD33	304	Small glutamine-rich tetr	yes	N/A	0.878	0.907	0.360	3e-38
Q32LM2	313	Small glutamine-rich tetr	yes	N/A	0.878	0.881	0.357	4e-38
Q8BJU0	315	Small glutamine-rich tetr	no	N/A	0.875	0.873	0.360	2e-36
O70593	314	Small glutamine-rich tetr	no	N/A	0.875	0.875	0.358	2e-36
O13797	317	Small glutamine-rich tetr	yes	N/A	0.707	0.700	0.318	5e-27
Q54VG4	334	Small glutamine-rich tetr	yes	N/A	0.815	0.766	0.278	4e-24
Q84K11	556	Serine/threonine-protein	N/A	N/A	0.331	0.187	0.432	7e-17

>sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 15/291 (5%)

Query: 2   SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIES 60
           S+KP  ++ +VI FLR++   D   ++ +E +EVA++CL   + I P++   A +  +  
Sbjct: 3   SVKP--LVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE 60

Query: 61  LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
           +F        ++  SN   S  E+V  +A++ K+ GN  M+++    AV  Y++AI+ D 
Sbjct: 61  MFTNSVCKNDIRPLSN---SVPEDVG-KADQLKDEGNNHMKEENYAAAVDCYTQAIELDP 116

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           +N VYYCNRAA+ +KL +Y  A++DC+ AI ID  Y+KAYGRMGLA T MN ++ A+ +Y
Sbjct: 117 NNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSY 176

Query: 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPS 232
            KA +LDP +  Y +N++ A   L   SS +G+G  F        P    M+  ++ +P 
Sbjct: 177 QKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLTFDMASLINNPAFITMAASLMQNPQ 236

Query: 233 IQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
           +QQ+   +  N      A  G  T + +L+ A QQ A Q++Q+NPEL+EQ+
Sbjct: 237 VQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL 287

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.
Rattus norvegicus (taxid: 10116)

>sp|O43765|SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens GN=SGTA PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 167/291 (57%), Gaps = 15/291 (5%)

Query: 11  SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYY--K 67
           ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+     K
Sbjct: 10  AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGK 69

Query: 68  DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
           +      S     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct: 70  EMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC 129

Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
           NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct: 130 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 189

Query: 188 PNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPSIQQVFGE 239
           P++  Y +N++ A   L  + S +G  G F        PG   M++ ++++P IQQ+   
Sbjct: 190 PDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNNPQIQQLMSG 249

Query: 240 LFANPGQQATATDG---SNTGIQALLNASQQIAAQLEQRNPELVEQIFQQF 287
           + +  G     T G   S   + +L+ A QQ A Q++Q+NPEL+EQ+  Q 
Sbjct: 250 MISG-GNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI 299

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 171/286 (59%), Gaps = 15/286 (5%)

Query: 8   IITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLF-QLY 65
           ++ +VI FLR++   DT  ++ +E +EVA++CL   + I P++   A +  +  +F   +
Sbjct: 7   LVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSF 66

Query: 66  YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY 125
            K++VL   +++     E+V  +A++ K+ GN  M+++    AV  Y++AI+ D +N VY
Sbjct: 67  CKNDVLPLSNSV----PEDVG-KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVY 121

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
           YCNRAA+ +KL +Y  A++DC+ AI ID  Y+KAYGRMGLA T +N ++ A+ +Y KA +
Sbjct: 122 YCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALD 181

Query: 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPSIQQVF 237
           LDP +  Y +N++ A   L   SS +G+G  F        P    M+  ++ +P +QQ+ 
Sbjct: 182 LDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQQLM 241

Query: 238 GELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
             +  N      A  G  T + +L+ A QQ A Q++Q+NPEL+EQ+
Sbjct: 242 SGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL 287

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 15/291 (5%)

Query: 2   SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIES 60
           S+KP  ++ +VI FLR++   D   ++ +E +EVA++CL   + I P++   A +  +  
Sbjct: 3   SVKP--LVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE 60

Query: 61  LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
           +F        ++  SN   S  E+V  +A++ K+ GN  M+++    AV  Y++AI+ D 
Sbjct: 61  MFTNSVCKNDIRPLSN---SVPEDVG-KADQLKDEGNNHMKEENYAAAVDCYTQAIELDP 116

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           +N VYYCNRAA+ +KL +Y  A++DC+ AI ID  Y+KAYGRMGLA T MN ++ A+ +Y
Sbjct: 117 NNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSY 176

Query: 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPS 232
            KA +LDP +  Y +N++ A   L   SS +G+G  F        P    M+  ++ +P 
Sbjct: 177 QKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFITMAASLMQNPQ 236

Query: 233 IQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
           +QQ+   +  N      A  G  T + +L+ A QQ A Q++Q+NPEL+EQ+
Sbjct: 237 VQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL 287

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q32LM2|SGTA_BOVIN Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 166/291 (57%), Gaps = 15/291 (5%)

Query: 11  SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYYKDE 69
           ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+     +
Sbjct: 10  AIIRFLHDQLRHGELSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAAAGK 69

Query: 70  VL--QWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
            L     S     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct: 70  ELPPDLRSPQETPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC 129

Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
           NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct: 130 NRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELD 189

Query: 188 PNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPSIQQVFGE 239
           P++  Y +N++ A   L  + S +G  G F        P    M++ ++++P +QQ+   
Sbjct: 190 PDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSG 249

Query: 240 LFANPGQQATATDG---SNTGIQALLNASQQIAAQLEQRNPELVEQIFQQF 287
           + +  G     T G   S   + +L+ A QQ A Q++Q+NPEL+EQ+  Q 
Sbjct: 250 MISG-GHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI 299

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Bos taurus (taxid: 9913)

>sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)

Query: 11  SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQ--LYYK 67
           ++I FL  +L    L+ +++E +EVA++CL  A+ +  ++ D A    +  +F+     K
Sbjct: 10  AIIQFLHGQLRHGGLSCDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATSSK 69

Query: 68  DEVLQWYSNINFSP-TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY 126
            E+ Q     + +P +EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+
Sbjct: 70  QEMPQDPRAPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYF 129

Query: 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           CNRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA EL
Sbjct: 130 CNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALEL 189

Query: 187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPSIQQVFG 238
           DP++  Y +N++ A   L  + S +G  G          P    M++ +++ P +QQ+  
Sbjct: 190 DPDNDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMS 249

Query: 239 ELFANPGQQATATDGSN---TGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
            + +  G     T GS+   + + +L+ A QQ A Q++Q+NPE VEQI  Q
Sbjct: 250 GMISG-GHNPLGTPGSSPQQSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQ 299

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Mus musculus (taxid: 10090)

>sp|O70593|SGTA_RAT Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 167/290 (57%), Gaps = 15/290 (5%)

Query: 11  SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYY-KD 68
           ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+      
Sbjct: 10  AIIQFLHGQLRHGGLSSDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATASK 69

Query: 69  EVLQWYSNINFSP-TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
           E+ Q     + +P +EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct: 70  EMPQDPRGPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFC 129

Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
           NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct: 130 NRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELD 189

Query: 188 PNDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPSIQQVFGE 239
           P++  Y +N++ A   L  + S +G  G          P    M++ +++ P +QQ+   
Sbjct: 190 PDNDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMSG 249

Query: 240 LFANPGQQATATDGS---NTGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
           + +  G     T GS   ++ + +L+ A QQ A Q++Q+NPE VEQI  Q
Sbjct: 250 MISG-GHNPLGTPGSSPQHSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQ 298

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|O13797|SGT2_SCHPO Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgt2 PE=3 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 129/232 (55%), Gaps = 10/232 (4%)

Query: 8   IITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYY 66
           +  ++I +L++ +   +++ E KE +EVA +C+  ++ I P+ I P S   + + F+ Y 
Sbjct: 6   VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEEIKPKSGDRLVAAFEEYE 65

Query: 67  KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY 126
           K   ++  S  + +     K EAEK K  GN A+     ++A+  Y+KAI+ D ++PVYY
Sbjct: 66  KLHPVEEDSTAHVN-----KEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYY 120

Query: 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
            NRAA+ N+L  ++ A+ D    + +DPH+A+A+GR+G A   + D  AA +AY K  + 
Sbjct: 121 SNRAAAYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDF 180

Query: 187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238
           DPN+ +    ++AA   LN  S +S + G      +  T   + P +  +FG
Sbjct: 181 DPNNEVLKRGLEAANKQLNQPSDSSATSGA----DQARTSAGAAPDLGSIFG 228

Co-chaperone that binds to the molecular chaperone Hsp70 and regulates Hsp70 ATPase activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 71/327 (21%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVD--I 58
           M+   + +  S++ FL+  +  D  NAES   ++VAVEC+   + + +N D    V   +
Sbjct: 1   MASNKQKLAVSILNFLKVSMKEDAENAES---LQVAVECIRDVFGVDEN-DSTLQVSAPL 56

Query: 59  ESLFQLYY-------------------KDEVL-QWYSNINFSPTE--------------- 83
             +F  +                    K+E+L Q YS I +   E               
Sbjct: 57  SEIFDKFIGENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLESFKQFITILEQKGAF 116

Query: 84  -----------------------EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
                                  EVK  AEK KN GN  + + K ++A+  Y+KAI  DN
Sbjct: 117 ANEDSCETVIKATKQKFMESKAGEVKAIAEKLKNEGNAKLNEGKHQEALSCYNKAILYDN 176

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           +N +Y+ NRAA+ + L+N++ ++ DC  AIK +P+Y KAY RMG AYT +  +  A+EAY
Sbjct: 177 TNAIYFANRAATYSALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAY 236

Query: 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS----TKVLSDPSIQQV 236
            KA EL+PN+  +  ++  A      +++ + +    PG+ ++       +LS+P+I+ +
Sbjct: 237 NKAIELEPNNETFKASLANAERLAAAANNQAPAMPNIPGMPDLGGLDFGSLLSNPAIRGL 296

Query: 237 FGELFANPGQQATATDGSNTGIQALLN 263
              L ++P  +    +G    + +LLN
Sbjct: 297 ANNLMSDPKMKEMMDNGD---MASLLN 320

May act as a co-chaperone and regulate the ATPase activity of heat shock proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 64/104 (61%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            AE+ K L N A +  K  QA+  Y++AI+ +  N VYY NRA ++ KL+ Y  A++D  
Sbjct: 13  RAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGT 72

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
            AI+IDP Y+K Y R G AY  M  +K AL+ + +  +L PNDP
Sbjct: 73  RAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDP 116

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses (By similarity). Can use para-nitrophenylphosphate (pNPP) and phosphorylated casein as substrate at pH 7.5 and 5.0.

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
350419021	322	PREDICTED: small glutamine-rich tetratri	0.882	0.860	0.379	9e-50
350419017	299	PREDICTED: small glutamine-rich tetratri	0.882	0.926	0.379	1e-49
340708935	322	PREDICTED: small glutamine-rich tetratri	0.882	0.860	0.372	5e-49
340708933	299	PREDICTED: small glutamine-rich tetratri	0.882	0.926	0.372	5e-49
307182603	297	Small glutamine-rich tetratricopeptide r	0.869	0.919	0.376	3e-47
346470641	322	hypothetical protein [Amblyomma maculatu	0.910	0.888	0.372	9e-47
328791828	318	PREDICTED: small glutamine-rich tetratri	0.882	0.871	0.379	2e-46
345482807	297	PREDICTED: small glutamine-rich tetratri	0.853	0.902	0.365	2e-46
332023178	296	Small glutamine-rich tetratricopeptide r	0.882	0.935	0.376	2e-46
241729581	324	secreted protein [Ixodes scapularis] gi|	0.866	0.839	0.371	3e-46

>gi|350419021|ref|XP_003492044.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform 2 [Bombus impatiens]

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 179/298 (60%), Gaps = 21/298 (7%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   ++ +++ FL ++L    + A+S+E +EVA++CL  AY++  +  P +      
Sbjct: 24  MAVK--GLVAAIVQFLTQQLEEGDITADSRESLEVAIQCLESAYNVQASDTPTN------ 75

Query: 61  LFQLY--YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
            F LY  YK  +     N+    T E KIEAE+ KN GNT M+ +K  +A+  Y+KAI  
Sbjct: 76  -FNLYEIYKSSIENAKPNLAPEATPEAKIEAERLKNEGNTLMKAEKHHEALTNYTKAIQL 134

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D  N VYYCNRAA+ +K+ NY+ A++DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E
Sbjct: 135 DGRNAVYYCNRAAAYSKIGNYQQAIKDCHTALSIDPSYSKAYGRLGLAYSSLQRHKEAKE 194

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLN--NSSSASGSGGVFPGLSEMSTKVLSDPSIQQV 236
           +Y KA E++P++  Y NN+Q A   L   + S+ S SGG  PG+   S  +LS+P++  +
Sbjct: 195 SYQKALEMEPDNESYKNNLQVAEEKLTQPSMSNMSLSGGTLPGMDLSS--LLSNPALMNM 252

Query: 237 FGELFANPGQQATATDGSNTGIQ------ALLNASQQIAAQLEQRNPELVEQIFQQFG 288
             ++ +NP  Q   ++  +  ++      AL+ A Q  A QL+  NPEL+E + +Q G
Sbjct: 253 ARQMLSNPTLQNMVSNFMSGQVEQGGHMDALIEAGQHFAQQLQNANPELIESLRRQMG 310

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419017|ref|XP_003492043.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform 1 [Bombus impatiens]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 179/298 (60%), Gaps = 21/298 (7%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   ++ +++ FL ++L    + A+S+E +EVA++CL  AY++  +  P +      
Sbjct: 1   MAVK--GLVAAIVQFLTQQLEEGDITADSRESLEVAIQCLESAYNVQASDTPTN------ 52

Query: 61  LFQLY--YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
            F LY  YK  +     N+    T E KIEAE+ KN GNT M+ +K  +A+  Y+KAI  
Sbjct: 53  -FNLYEIYKSSIENAKPNLAPEATPEAKIEAERLKNEGNTLMKAEKHHEALTNYTKAIQL 111

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D  N VYYCNRAA+ +K+ NY+ A++DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E
Sbjct: 112 DGRNAVYYCNRAAAYSKIGNYQQAIKDCHTALSIDPSYSKAYGRLGLAYSSLQRHKEAKE 171

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLN--NSSSASGSGGVFPGLSEMSTKVLSDPSIQQV 236
           +Y KA E++P++  Y NN+Q A   L   + S+ S SGG  PG+   S  +LS+P++  +
Sbjct: 172 SYQKALEMEPDNESYKNNLQVAEEKLTQPSMSNMSLSGGTLPGMDLSS--LLSNPALMNM 229

Query: 237 FGELFANPGQQATATDGSNTGIQ------ALLNASQQIAAQLEQRNPELVEQIFQQFG 288
             ++ +NP  Q   ++  +  ++      AL+ A Q  A QL+  NPEL+E + +Q G
Sbjct: 230 ARQMLSNPTLQNMVSNFMSGQVEQGGHMDALIEAGQHFAQQLQNANPELIESLRRQMG 287

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708935|ref|XP_003393072.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform 2 [Bombus terrestris]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 177/298 (59%), Gaps = 21/298 (7%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   ++ +++ FL ++L    + A+S+E +EVA++CL  AY++  +  P +      
Sbjct: 24  MAVK--GLVAAIVQFLTQQLEEGDITADSRESLEVAIQCLESAYNVQASDTPTN------ 75

Query: 61  LFQLY--YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
            F LY  YK  +     N+    T E KIEAE+ KN GN  M+ +K  +A+  Y+KAI  
Sbjct: 76  -FNLYEIYKSSIENAKPNLAPEATPEAKIEAERLKNEGNALMKAEKHHEALTNYTKAIQL 134

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D  N VYYCNRAA+++K+ NY+ A++DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E
Sbjct: 135 DGRNAVYYCNRAAAHSKIGNYQQAIKDCHTALSIDPSYSKAYGRLGLAYSSLQRHKEAKE 194

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSS--SASGSGGVFPGLSEMSTKVLSDPSIQQV 236
           +Y KA E++P++  Y NN+Q A   L   S  +   SGG  PG+   S  +LS+P++  +
Sbjct: 195 SYQKALEMEPDNESYKNNLQVAEEKLAQPSMNNMGLSGGTLPGMDLSS--LLSNPALMNM 252

Query: 237 FGELFANPGQQATATDGSNTGIQ------ALLNASQQIAAQLEQRNPELVEQIFQQFG 288
             ++ +NP  Q   ++  +  ++      AL+ A Q  A QL+  NPEL+E + +Q G
Sbjct: 253 ARQMLSNPALQNMVSNFMSGQVEQGGHMDALIEAGQHFAQQLQNANPELIESLRRQMG 310

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708933|ref|XP_003393071.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform 1 [Bombus terrestris]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 177/298 (59%), Gaps = 21/298 (7%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   ++ +++ FL ++L    + A+S+E +EVA++CL  AY++  +  P +      
Sbjct: 1   MAVK--GLVAAIVQFLTQQLEEGDITADSRESLEVAIQCLESAYNVQASDTPTN------ 52

Query: 61  LFQLY--YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
            F LY  YK  +     N+    T E KIEAE+ KN GN  M+ +K  +A+  Y+KAI  
Sbjct: 53  -FNLYEIYKSSIENAKPNLAPEATPEAKIEAERLKNEGNALMKAEKHHEALTNYTKAIQL 111

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D  N VYYCNRAA+++K+ NY+ A++DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E
Sbjct: 112 DGRNAVYYCNRAAAHSKIGNYQQAIKDCHTALSIDPSYSKAYGRLGLAYSSLQRHKEAKE 171

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSS--SASGSGGVFPGLSEMSTKVLSDPSIQQV 236
           +Y KA E++P++  Y NN+Q A   L   S  +   SGG  PG+   S  +LS+P++  +
Sbjct: 172 SYQKALEMEPDNESYKNNLQVAEEKLAQPSMNNMGLSGGTLPGMDLSS--LLSNPALMNM 229

Query: 237 FGELFANPGQQATATDGSNTGIQ------ALLNASQQIAAQLEQRNPELVEQIFQQFG 288
             ++ +NP  Q   ++  +  ++      AL+ A Q  A QL+  NPEL+E + +Q G
Sbjct: 230 ARQMLSNPALQNMVSNFMSGQVEQGGHMDALIEAGQHFAQQLQNANPELIESLRRQMG 287

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182603|gb|EFN69774.1| Small glutamine-rich tetratricopeptide repeat-containing protein alpha [Camponotus floridanus]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 176/300 (58%), Gaps = 27/300 (9%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   +I++++ FL  +L    + A+S+E +EVA++CL  AY++  +  P +      
Sbjct: 1   MAVK--GLISAIVQFLTDQLQDGDITADSRESLEVAIQCLESAYNVQASDAPPN------ 52

Query: 61  LFQLY--YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
            F +Y  YK+ V    SN+    T E K EAE+ KN+GN  M+Q K  +A+  Y+KAI  
Sbjct: 53  -FNIYQVYKNTVENSTSNLGPEATAESKAEAERLKNMGNILMKQKKHHEALANYTKAIQL 111

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D  N VYYCNRAA ++KL N+ LA++DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E
Sbjct: 112 DGRNAVYYCNRAAVHSKLGNHALAIKDCHTALSIDPSYSKAYGRLGLAYSSLERHKEAKE 171

Query: 179 AYTKAAELDPNDPLYANNMQAAMS---------NLNNSSSASGSGGVF-PGLSEMSTKVL 228
           +Y KA  ++P++  Y NN+Q A           NL N      S  +  P L  M+ ++L
Sbjct: 172 SYEKALAMEPDNESYRNNLQLAEEKLAQLGVNQNLPNMPGMDLSALLSNPALMNMARQML 231

Query: 229 SDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFG 288
           SDP++Q +   L +     +   +G N  ++ L+ A QQ+A Q++  NPEL+E + +Q G
Sbjct: 232 SDPAMQNMMCNLMS-----SNVEEGGNR-MEVLIEAGQQLAQQMQNANPELIESLRRQMG 285

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470641|gb|AEO35165.1| hypothetical protein [Amblyomma maculatum]

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 120/322 (37%), Positives = 182/322 (56%), Gaps = 36/322 (11%)

Query: 8   IITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYY 66
           ++ S++ FLR++L    L+A++KE +EVAV+CL  AY +  +++   S V    L +++ 
Sbjct: 7   LVLSIVQFLRQQLQTADLSADAKESVEVAVQCLETAYGVSLEDLSNESLVVSRPLLEIFA 66

Query: 67  ----KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN 122
               ++ V   + N+   PTE  K EAEKYK  GN  M+ +    A+  Y+KAI  D  N
Sbjct: 67  DALPREHVQTSHENVP-EPTEAQKAEAEKYKQEGNNMMKLEMYTAALECYTKAISLDGRN 125

Query: 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182
            VYYCNRAA+++KL N+  A+ DC+ A++IDP Y+KAYGR+GLAY  +N ++ A E Y K
Sbjct: 126 AVYYCNRAAAHSKLDNHLDAIEDCKRALEIDPKYSKAYGRIGLAYASLNQHQKAKECYQK 185

Query: 183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVF--------------------PGLSE 222
           A ELDP++  Y NN++ A   L + +S SG+G +                     P L  
Sbjct: 186 AVELDPDNQSYVNNLRVAEEKLRDMAS-SGNGDMRRPSGGGSGGGGLDFGSLLNNPTLMN 244

Query: 223 MSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQ 282
           M+  ++ DP++Q +   L +    Q T       G+ ALL A QQ+A+Q++  NPELVEQ
Sbjct: 245 MAATLMQDPNMQNIMSGLMSGGLSQNTG-----GGLDALLQAGQQLASQMQAANPELVEQ 299

Query: 283 IFQQFGPALNNFKSNVPRNPPG 304
           + +Q    +NN     P N  G
Sbjct: 300 LRRQ----MNNPNDRNPSNEDG 317

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791828|ref|XP_393400.3| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Apis mellifera]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 174/298 (58%), Gaps = 21/298 (7%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   +I +++ FL ++L    + A+S+E +EVA++CL  AY++  +  P +      
Sbjct: 20  MAVK--GLIAAIVQFLTQQLEEGDITADSRESLEVAIQCLESAYNVQASDTPTN------ 71

Query: 61  LFQLY--YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
            F LY  YK  V      +    T E K EAE+ KN GNT M+ +K  +A+  Y+KAI  
Sbjct: 72  -FNLYEVYKSSVENAKPYLAPEATPEAKAEAERLKNEGNTLMKAEKHHEALANYTKAIQL 130

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D  N VYYCNRAA+ +K+ NY+ A+ DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E
Sbjct: 131 DGRNAVYYCNRAAAYSKIGNYQQAINDCHTALSIDPSYSKAYGRLGLAYSSLQRHKEAKE 190

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSS-SASGSGG-VFPGLSEMSTKVLSDPSIQQV 236
           +Y KA E++P++  Y NN+Q A   L   S S  G GG   PG+   S  +LS+P++  +
Sbjct: 191 SYQKALEMEPDNESYKNNLQVAEEKLAQPSMSNMGLGGSALPGMDLSS--LLSNPALMNM 248

Query: 237 FGELFANPGQQATATDGSNTGIQ------ALLNASQQIAAQLEQRNPELVEQIFQQFG 288
             ++ +NP  Q   ++  +  ++      AL+ A Q  A QL+  NPEL+E + +Q G
Sbjct: 249 ARQMLSNPALQNMVSNFMSGQVEQGGHMDALIEAGQHFARQLQNANPELIESLRRQMG 306

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482807|ref|XP_003424668.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform 2 [Nasonia vitripennis] gi|345482809|ref|XP_001601120.2| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like isoform 1 [Nasonia vitripennis]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 30/298 (10%)

Query: 6   EDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY 65
           +++++S+I  L++ + +D L A+++E +EV+++CL  AY +  + D   N DI S+++  
Sbjct: 4   KNLVSSIIKCLKQLMEQDNLAADARESLEVSIQCLESAYGVQGS-DANENFDILSIYKT- 61

Query: 66  YKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY 125
                 Q  +N  F  T + K EAE+ KN GN  M+ +K  +A+  YSKAI+ D+ N VY
Sbjct: 62  ------QQCNNTPFEATPDAKAEAERLKNEGNALMKNEKYHEALANYSKAIELDSQNAVY 115

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
           YCNRAA  +K+ N+  A++DC  A++ DP Y+KAYGR+GLAYT +N YK A E Y KA E
Sbjct: 116 YCNRAAVYSKIGNHHHAIKDCNTALEFDPSYSKAYGRLGLAYTSLNKYKEAKENYRKALE 175

Query: 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVF---------------PGLSEMSTKVLSD 230
           L+P++    NN+Q A   L  +S+ S   G                 P L  M+ ++LSD
Sbjct: 176 LEPDNESLKNNLQIAEEKLIQNSNESALDGHAPSNNSNMDLSSLLSNPALMNMARQMLSD 235

Query: 231 PSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFG 288
           P++Q +   L +   +Q    D       AL+ A QQ+A Q++  NP+L++ + +Q G
Sbjct: 236 PTMQNMMSNLMSGNVEQGGRMD-------ALIEAGQQLAQQMQSANPDLIDSLRRQMG 286

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023178|gb|EGI63434.1| Small glutamine-rich tetratricopeptide repeat-containing protein alpha [Acromyrmex echinatior]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 178/295 (60%), Gaps = 18/295 (6%)

Query: 1   MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60
           M++K   +++S++ FL  +L    + A+S+E +EVA++CL  AY++  +  PA NV+   
Sbjct: 1   MAVK--GLVSSIVKFLTDQLQDGDITADSRESLEVAIQCLESAYNVQASDAPA-NVN--- 54

Query: 61  LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
           L+Q+Y K+ V      +    T E K EAE+ KN GNT M+Q+K  +A+  Y+KAI  D+
Sbjct: 55  LYQIY-KNAVENAAPVLGPEATPEAKAEAERLKNEGNTLMKQEKHHEALANYTKAITLDS 113

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
            N VYYCNRAA ++KL N+ LA++DC  A+ IDP Y+KAYGR+GLAY+ +  +K A E+Y
Sbjct: 114 RNAVYYCNRAAVHSKLGNHTLAIKDCNTALSIDPSYSKAYGRLGLAYSSLERHKEAKESY 173

Query: 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS-TKVLSDPSIQQVFGE 239
            KA  ++P++  Y NN+Q A   L    +  G     P L  M  + +LS+PS+  +  +
Sbjct: 174 EKALAMEPDNESYRNNLQLAEEKL----AQLGVNQSLPNLPGMDLSALLSNPSLMNMARQ 229

Query: 240 LFANPGQQATATDGSNTGIQA------LLNASQQIAAQLEQRNPELVEQIFQQFG 288
           + ++P  Q    +  +  ++       L+ A QQ+A Q++  NPEL+E + +Q G
Sbjct: 230 MLSDPAMQNMMCNLMSGNVEEGGRMELLIEAGQQLAQQMQNANPELIESLRRQMG 284

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241729581|ref|XP_002404605.1| secreted protein [Ixodes scapularis] gi|215505493|gb|EEC14987.1| secreted protein [Ixodes scapularis] gi|442758477|gb|JAA71397.1| Putative conserved secreted 15 kda protein [Ixodes ricinus]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 32/304 (10%)

Query: 8   IITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDI---ESLFQL 64
           ++ S++ FLR++L    L++++KE +EVAV+CL  AY +  +ID  SN  +    +L  +
Sbjct: 7   LVLSIVQFLRQQLQTADLSSDAKESVEVAVQCLETAYGV--SIDDLSNDSLLVSRTLLDI 64

Query: 65  YYKDEVLQWYSNINFS---PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS 121
           + ++ V+Q ++ ++ +   PTE  + EAEKYK  GN  M+ +    A+  Y+KAI  D +
Sbjct: 65  F-REVVVQEHAQVHETLPEPTEAQRAEAEKYKQEGNNMMKLEMYTAALECYTKAISLDGN 123

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
           N VYYCNRAA+++KL N+  A+ DCQ A+ IDP Y KAYGR+GLAY  +N+++ A E Y 
Sbjct: 124 NAVYYCNRAAAHSKLNNHADAIEDCQRALDIDPKYGKAYGRIGLAYASLNEHQRAKECYQ 183

Query: 182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGS----------------GGVF--PGLSEM 223
           KA ELDP +  Y NN++ A   L    S                    G +   P L  M
Sbjct: 184 KAVELDPENQSYINNLRVAEEKLRGMPSPGNGDARRAGGVGGGAPMDFGSLLNNPTLMNM 243

Query: 224 STKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
           +  ++ DP++Q +   L +    Q T       G+ ALL A QQ+A+Q++  NPELVEQ+
Sbjct: 244 AATLMQDPTMQNMMAGLMSGGMSQNTG-----GGLDALLQAGQQLASQMQASNPELVEQL 298

Query: 284 FQQF 287
            +  
Sbjct: 299 RRHM 302

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
RGD|727976	304	Sgtb "small glutamine-rich tet	0.878	0.907	0.336	1.6e-38
UNIPROTKB|O43765	313	SGTA "Small glutamine-rich tet	0.875	0.878	0.344	2.6e-38
MGI|MGI:2444615	304	Sgtb "small glutamine-rich tet	0.878	0.907	0.336	2.6e-38
UNIPROTKB|E2R2T8	314	SGTA "Uncharacterized protein"	0.875	0.875	0.347	5.5e-38
UNIPROTKB|F1S8G6	313	SGTA "Uncharacterized protein"	0.875	0.878	0.348	5.5e-38
ZFIN|ZDB-GENE-040704-72	320	sgta "small glutamine-rich tet	0.859	0.843	0.339	5.5e-38
UNIPROTKB|Q32LM2	313	SGTA "Small glutamine-rich tet	0.875	0.878	0.337	1.1e-37
MGI|MGI:1098703	315	Sgta "small glutamine-rich tet	0.875	0.873	0.340	7.2e-36
RGD|620815	314	Sgta "small glutamine-rich tet	0.875	0.875	0.337	1.2e-35
UNIPROTKB|O70593	314	Sgta "Small glutamine-rich tet	0.875	0.875	0.337	1.2e-35

RGD|727976 Sgtb "small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta" [Rattus norvegicus (taxid:10116)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 98/291 (33%), Positives = 158/291 (54%)

Query:     2 SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIES 60
             S+KP  ++ +VI FLR++   D   ++ +E +EVA++CL   + I P++   A +  +  
Sbjct:     3 SVKP--LVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE 60

Query:    61 LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
             +F        ++  SN   S  E+V  +A++ K+ GN  M+++    AV  Y++AI+ D 
Sbjct:    61 MFTNSVCKNDIRPLSN---SVPEDVG-KADQLKDEGNNHMKEENYAAAVDCYTQAIELDP 116

Query:   121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
             +N VYYCNRAA+ +KL +Y  A++DC+ AI ID  Y+KAYGRMGLA T MN ++ A+ +Y
Sbjct:   117 NNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSY 176

Query:   181 TKAAELDPNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPS 232
              KA +LDP +  Y                       F        P    M+  ++ +P 
Sbjct:   177 QKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLTFDMASLINNPAFITMAASLMQNPQ 236

Query:   233 IQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
             +QQ+   +  N      A  G  T + +L+ A QQ A Q++Q+NPEL+EQ+
Sbjct:   237 VQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL 287

GO:0006457 "protein folding" evidence=TAS

GO:0008022 "protein C-terminus binding" evidence=TAS

GO:0030544 "Hsp70 protein binding" evidence=TAS

GO:0051087 "chaperone binding" evidence=TAS

UNIPROTKB|O43765 SGTA "Small glutamine-rich tetratricopeptide repeat-containing protein alpha" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 100/290 (34%), Positives = 156/290 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYY--K 67
             ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+     K
Sbjct:    10 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGK 69

Query:    68 DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
             +      S     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct:    70 EMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC 129

Query:   128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
             NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct:   130 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 189

Query:   188 PNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFGE 239
             P++  Y                       F        PG   M++ ++++P IQQ+   
Sbjct:   190 PDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNNPQIQQLMSG 249

Query:   240 LFANPGQQATATDG---SNTGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
             + +  G     T G   S   + +L+ A QQ A Q++Q+NPEL+EQ+  Q
Sbjct:   250 MISG-GNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQ 298

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2444615 Sgtb "small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta" [Mus musculus (taxid:10090)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 98/291 (33%), Positives = 158/291 (54%)

Query:     2 SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIES 60
             S+KP  ++ +VI FLR++   D   ++ +E +EVA++CL   + I P++   A +  +  
Sbjct:     3 SVKP--LVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE 60

Query:    61 LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
             +F        ++  SN   S  E+V  +A++ K+ GN  M+++    AV  Y++AI+ D 
Sbjct:    61 MFTNSVCKNDIRPLSN---SVPEDVG-KADQLKDEGNNHMKEENYAAAVDCYTQAIELDP 116

Query:   121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
             +N VYYCNRAA+ +KL +Y  A++DC+ AI ID  Y+KAYGRMGLA T MN ++ A+ +Y
Sbjct:   117 NNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSY 176

Query:   181 TKAAELDPNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPS 232
              KA +LDP +  Y                       F        P    M+  ++ +P 
Sbjct:   177 QKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFITMAASLMQNPQ 236

Query:   233 IQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
             +QQ+   +  N      A  G  T + +L+ A QQ A Q++Q+NPEL+EQ+
Sbjct:   237 VQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL 287

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0042803 "protein homodimerization activity" evidence=ISA

GO:0046982 "protein heterodimerization activity" evidence=ISA

UNIPROTKB|E2R2T8 SGTA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 101/291 (34%), Positives = 156/291 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYY--K 67
             ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+     K
Sbjct:    10 AIIRFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDHDLALPQTLPEIFEAAAAGK 69

Query:    68 DEVLQ-WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY 126
              EV Q   S     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+
Sbjct:    70 QEVPQDLRSPERTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF 129

Query:   127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
             CNRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA EL
Sbjct:   130 CNRAAAYSKLGNYTGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYKKALEL 189

Query:   187 DPNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFG 238
             DP +  Y                       F        P    M++ ++++P +QQ+  
Sbjct:   190 DPENETYKSNLKIAELKLRETPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMS 249

Query:   239 ELFANPGQQATATDG---SNTGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
              + +  G     T G   S   + +L+ A QQ A Q++Q+NPEL+EQ+  Q
Sbjct:   250 GMISG-GHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQ 299

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1S8G6 SGTA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 101/290 (34%), Positives = 155/290 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYYKD- 68
             ++I FL  +L    L+ +++E +EVA++CL  A+ +  ++ D A    +  +F+      
Sbjct:    10 AIIRFLHDQLRHGGLSPDAQESLEVAIQCLETAFGVTVEDSDLALPQTLSEIFEAAASGK 69

Query:    69 EVLQ-WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
             EV Q   S     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + SN VY+C
Sbjct:    70 EVPQDLRSPQQTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFC 129

Query:   128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
             NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct:   130 NRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELD 189

Query:   188 PNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFGE 239
             P++  Y                       F        P    M++ ++++P +QQ+   
Sbjct:   190 PDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSG 249

Query:   240 LFANPGQQATATDG---SNTGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
             + +  G     T G   S   + +L+ A QQ A Q++Q+NPEL+EQ+  Q
Sbjct:   250 MISG-GHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQ 298

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040704-72 sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 96/283 (33%), Positives = 150/283 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDN-IDPASNVDIESLF-QLYYKD 68
             S++ FLR +    +LN++ +E +EVA++CL   + I  +    A+   +  +F     K+
Sbjct:    24 SMVQFLRDQTHCGSLNSDEQESLEVAIQCLETTFKISSSDCHLAAPQPLREIFLNSLLKN 83

Query:    69 EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCN 128
             +++       F   E+++  AE+ KN GN  M+++    AV  Y+KAI+ D  N VYYCN
Sbjct:    84 DIVTLPKT--FPSPEDIE-RAEQLKNEGNNHMKEENYSSAVDCYTKAIELDQRNAVYYCN 140

Query:   129 RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
             RAA+++KL+NY  A+ DC+ AI IDP Y+KAYGRMGLA T M+ Y  A+  + KA  LDP
Sbjct:   141 RAAAHSKLENYTEAMGDCERAIAIDPSYSKAYGRMGLALTSMSKYPEAISYFNKALVLDP 200

Query:   189 NDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFGEL 240
              +  Y                       F        P    M+  V+ +  +QQ+   +
Sbjct:   201 ENDTYKSNLKIVEQKQKEASSPTATGLGFDMASLINNPAFISMAASVMQNQQVQQLMSGM 260

Query:   241 FANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQI 283
              +N      A  G  + I +L+ A QQ A Q++Q+NPEL+EQ+
Sbjct:   261 MSNAVGGPAAGVGGLSDISSLIEAGQQFAQQIQQQNPELIEQL 303

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q32LM2 SGTA "Small glutamine-rich tetratricopeptide repeat-containing protein alpha" [Bos taurus (taxid:9913)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 98/290 (33%), Positives = 155/290 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYYKDE 69
             ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+     +
Sbjct:    10 AIIRFLHDQLRHGELSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAAAGK 69

Query:    70 VL--QWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
              L     S     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct:    70 ELPPDLRSPQETPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC 129

Query:   128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
             NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct:   130 NRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELD 189

Query:   188 PNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFGE 239
             P++  Y                       F        P    M++ ++++P +QQ+   
Sbjct:   190 PDNETYKSNLKVAELRLREAPSPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSG 249

Query:   240 LFANPGQQATATDG---SNTGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
             + +  G     T G   S   + +L+ A QQ A Q++Q+NPEL+EQ+  Q
Sbjct:   250 MISG-GHNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQ 298

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1098703 Sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Mus musculus (taxid:10090)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 99/291 (34%), Positives = 155/291 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYY--K 67
             ++I FL  +L    L+ +++E +EVA++CL  A+ +  ++ D A    +  +F+     K
Sbjct:    10 AIIQFLHGQLRHGGLSCDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATSSK 69

Query:    68 DEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY 126
              E+ Q   +     P+EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+
Sbjct:    70 QEMPQDPRAPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYF 129

Query:   127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
             CNRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA EL
Sbjct:   130 CNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALEL 189

Query:   187 DPNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFG 238
             DP++  Y                                P    M++ +++ P +QQ+  
Sbjct:   190 DPDNDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMS 249

Query:   239 ELFANPGQQATATDGSN---TGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
              + +  G     T GS+   + + +L+ A QQ A Q++Q+NPE VEQI  Q
Sbjct:   250 GMISG-GHNPLGTPGSSPQQSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQ 299

GO:0008150 "biological_process" evidence=ND

GO:0042803 "protein homodimerization activity" evidence=ISA

GO:0046982 "protein heterodimerization activity" evidence=ISA

RGD|620815 Sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 98/290 (33%), Positives = 156/290 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYYKD- 68
             ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+      
Sbjct:    10 AIIQFLHGQLRHGGLSSDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATASK 69

Query:    69 EVLQWYSNINFSP-TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
             E+ Q     + +P +EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct:    70 EMPQDPRGPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFC 129

Query:   128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
             NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct:   130 NRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELD 189

Query:   188 PNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFGE 239
             P++  Y                                P    M++ +++ P +QQ+   
Sbjct:   190 PDNDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMSG 249

Query:   240 LFANPGQQATATDGSN---TGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
             + +  G     T GS+   + + +L+ A QQ A Q++Q+NPE VEQI  Q
Sbjct:   250 MISG-GHNPLGTPGSSPQHSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQ 298

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|O70593 Sgta "Small glutamine-rich tetratricopeptide repeat-containing protein alpha" [Rattus norvegicus (taxid:10116)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 98/290 (33%), Positives = 156/290 (53%)

Query:    11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIP-DNIDPASNVDIESLFQLYYKD- 68
             ++I FL  +L    L+++++E +EVA++CL  A+ +  ++ D A    +  +F+      
Sbjct:    10 AIIQFLHGQLRHGGLSSDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATASK 69

Query:    69 EVLQWYSNINFSP-TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC 127
             E+ Q     + +P +EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+C
Sbjct:    70 EMPQDPRGPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFC 129

Query:   128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
             NRAA+ +KL NY  A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELD
Sbjct:   130 NRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELD 189

Query:   188 PNDPLYXXXXXXXXXXXXXXXXXXXXXXVF--------PGLSEMSTKVLSDPSIQQVFGE 239
             P++  Y                                P    M++ +++ P +QQ+   
Sbjct:   190 PDNDTYKSNLKIAELKLREAPSPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMSG 249

Query:   240 LFANPGQQATATDGSN---TGIQALLNASQQIAAQLEQRNPELVEQIFQQ 286
             + +  G     T GS+   + + +L+ A QQ A Q++Q+NPE VEQI  Q
Sbjct:   250 MISG-GHNPLGTPGSSPQHSDLASLIQAGQQFAQQMQQQNPEFVEQIRSQ 298

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VD33	SGTB_MOUSE	No assigned EC number	0.3608	0.8789	0.9078	yes	N/A
O13797	SGT2_SCHPO	No assigned EC number	0.3189	0.7070	0.7003	yes	N/A
Q32LM2	SGTA_BOVIN	No assigned EC number	0.3573	0.8789	0.8817	yes	N/A
Q80W98	SGTB_RAT	No assigned EC number	0.3608	0.8789	0.9078	yes	N/A
O43765	SGTA_HUMAN	No assigned EC number	0.3642	0.8789	0.8817	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	314
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-23
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-14
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-13
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-13
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-12
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-08
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-08
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	4e-06
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	7e-06
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	1e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	5e-04
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	9e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	0.002
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.003
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	0.003
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 45/100 (45%), Positives = 61/100 (61%)

Query: 90  EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149
           E   NLGN   +    ++A+  Y KA++ D  N   Y N AA+  KL  Y+ AL D + A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           +++DP  AKAY  +GLAY ++  Y+ ALEAY KA ELDPN
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 65.8 bits (161), Expect = 5e-14
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDC 146
            AE  KNLGN   +    ++A+  Y KA++ D  N   Y N A +  KL K+Y+ AL D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 147 QIAIKIDP 154
           + A+++DP
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 75  SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN 134
           S  N S  EE K  A K K  GN A +     +A+  YSKAI+C   +PVYY NRAA +N
Sbjct: 114 SVANLS-EEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHN 171

Query: 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177
            L +++  + D   A+++DP Y+KA  R   AY  +  Y  AL
Sbjct: 172 ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 38/100 (38%), Positives = 54/100 (54%)

Query: 99  AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158
           A   D    AV  Y++AID D +N   Y +RA +N KL N+  A+ D   AI++DP  AK
Sbjct: 12  AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71

Query: 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198
           AY R G A  ++ +Y+ A  A  K A L P D  +   ++
Sbjct: 72  AYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK 111

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 63.6 bits (155), Expect = 6e-13
 Identities = 28/81 (34%), Positives = 40/81 (49%)

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
             N      KL +Y  AL   + A+++DP  A AY  +  AY ++  Y+ ALE Y KA E
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 186 LDPNDPLYANNMQAAMSNLNN 206
           LDP++     N+  A   L  
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGK 83

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAALEAY 180
           N     N   +  KL +Y  A+   + A+++DP  A+AY  + LAY ++  DY+ ALE  
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 181 TKAAELDP 188
            KA ELDP
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 48.2 bits (116), Expect = 4e-08
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           AKA   +G AY ++  Y  ALE Y KA EL+PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
           +  +Y  AL   + A+   P  A+A   +G A  +      A      A   DP+DP
Sbjct: 9   RAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 3/177 (1%)

Query: 15  FLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQW 73
            L + LL   L  E+    E A+E L KA  + PD     + + + +L++L   +E L+ 
Sbjct: 93  NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152

Query: 74  YSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAAS 132
           Y         E+   AE    LG       + E+A+    KA+  + + +     N    
Sbjct: 153 YEKA-LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211

Query: 133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
             KL  Y+ AL   + A+++DP  A+A   + L   ++  Y+ ALEA  KA ELDP+
Sbjct: 212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+A   +G AY ++ DY  ALE Y KA ELDPN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---NSNPVYYCNRAASNNKLKNYKLALR 144
            AE    LG    +    E+A+  Y KA++ D   N          A    L  Y+ AL 
Sbjct: 130 LAEALLALG-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188

Query: 145 DCQIAIKIDP-HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
             + A+K++P   A+A   +GL Y ++  Y+ ALE Y KA ELDP++     N+   +  
Sbjct: 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248

Query: 204 LNNSSSA 210
           L     A
Sbjct: 249 LGRYEEA 255

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKI-------DPHYAKAYGRMGLAYTQMNDYKAAL 177
              N A    +L +Y  AL   + A+++        P  A+A   +   Y  + DY  AL
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 178 EAYTKAAELDPN 189
           E   KA  L   
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
             A+A   +G A  ++ DY  A+EAY KA ELDP++     N+
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43

Length = 69

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
           N+  A+   + A ++ P   +A+  +G A  Q+  +  A  AY +A EL PN+P  ANN+
Sbjct: 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174

Query: 198 QAAMSNL 204
              MS L
Sbjct: 175 --GMSLL 179

Length = 257

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+A   +GLAY ++ DY+ ALEAY KA ELDPN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           A+ + P  A AY  +G+  TQ  ++ AA EA+    ELDP 
Sbjct: 90  ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT 130

Length = 296

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
           + ++A  +   A++ DP    AY  + L Y Q+ + + A +++ +A  L+PN+    NN
Sbjct: 46  DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 16/227 (7%)

Query: 50  IDPASNVDIESLFQLYYK----DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105
           IDP +   I +L  LY +    +E + W         E    E E    L    + + + 
Sbjct: 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLE----KAAELNPQEIEPALALAQYYLGKGQL 583

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
           ++A+   ++A D    +P  +     +     +   A+   +  + + P  A A   +  
Sbjct: 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643

Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225
           AY  M +Y  A+ +  +A EL P D   A    A +      + ++           +  
Sbjct: 644 AYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESA-----KKIAKSLQK 697

Query: 226 KVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQL 272
           +        ++ G+L+        A       ++     S Q A +L
Sbjct: 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKL 742

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +A   +G  Y ++ DY  ALE Y KA ELDP++     N+ AA   L     A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEA 53

Length = 100

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           A+AY  +G  Y Q+ DY+ A E Y KA ELDPN
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/93 (21%), Positives = 41/93 (44%)

Query: 95  LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
            G+  ++ +K ++A+    KA+  D ++P+   N A +  K    + A+R     +  DP
Sbjct: 346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405

Query: 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
                +  +  AY ++ +   AL A  +   L 
Sbjct: 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438

Length = 484

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
           ++++ AL   +  + + P         GL Y Q+  ++AAL       EL P+ P
Sbjct: 9   EDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAP 63

Length = 73

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 20/95 (21%), Positives = 34/95 (35%)

Query: 95  LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
            G+  +     E A+  Y KAI    +N       A    +   ++ A +     +K  P
Sbjct: 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

Query: 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           +   A+    L   Q  +Y+ A E    A +  P 
Sbjct: 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.9 bits (84), Expect = 9e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY 156
                N   +  KL +Y  AL   + A+++DP+ 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHY 156
             N   +  KL  Y  AL   + A++++P+ 
Sbjct: 4   LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 95  LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
            G +  Q    EQA    ++ +    ++       A+   +L     A+     A+ +DP
Sbjct: 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP 360

Query: 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
               A   +G AY  + D++ A E   KA ELDP +   A   Q  +S L
Sbjct: 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA--AARTQLGISKL 408

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
           LA  D   A+ I P   + +  +G+  TQ  ++ AA EA+    ELDP
Sbjct: 83  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130

Length = 297

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
           +Y  A ++ + A++ DP Y  A+      Y ++ +   A E+Y KA  L PN+    NN
Sbjct: 50  DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108

Length = 250

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
           +YC  A       +   A    + A+  DP   +A   +G       DY AA+EA  +  
Sbjct: 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241

Query: 185 ELDP 188
           E DP
Sbjct: 242 EQDP 245

Length = 389

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE----LDPNDPLYANNM 197
            P  A A   + L   ++ DY  ALE   KA E    L  + P  A  +
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARAL 49

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG0553|consensus	304		99.97
KOG4626|consensus	966		99.91
KOG4626|consensus	966		99.9
KOG1126|consensus	638		99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
KOG1126|consensus	638		99.81
PRK12370	553	invasion protein regulator; Provisional	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
KOG0548|consensus	539		99.81
KOG1155|consensus	559		99.8
PRK15359	144	type III secretion system chaperone protein SscB;	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.75
KOG1125|consensus	579		99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.74
KOG1155|consensus	559		99.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.73
PRK11189	296	lipoprotein NlpI; Provisional	99.71
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.71
PRK15359	144	type III secretion system chaperone protein SscB;	99.71
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.7
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
KOG0547|consensus	606		99.7
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.7
PRK12370	553	invasion protein regulator; Provisional	99.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.66
PLN02789	320	farnesyltranstransferase	99.66
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.66
KOG2003|consensus	840		99.66
PRK11189	296	lipoprotein NlpI; Provisional	99.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.64
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.62
KOG1173|consensus	611		99.61
KOG0553|consensus	304		99.61
KOG1125|consensus	579		99.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.59
KOG2002|consensus	1018		99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.58
KOG0547|consensus	606		99.56
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.55
KOG2002|consensus	1018		99.54
KOG1129|consensus	478		99.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.52
KOG0548|consensus	539		99.51
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.5
PLN02789	320	farnesyltranstransferase	99.49
KOG0550|consensus	486		99.49
KOG0543|consensus	397		99.48
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.48
PRK14574	822	hmsH outer membrane protein; Provisional	99.47
KOG1129|consensus	478		99.46
KOG2076|consensus	895		99.45
KOG0624|consensus	504		99.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.45
KOG1173|consensus	611		99.42
KOG4234|consensus	271		99.41
KOG2076|consensus	895		99.41
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.41
KOG3060|consensus	289		99.4
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.4
PRK15331	165	chaperone protein SicA; Provisional	99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
KOG4648|consensus	536		99.38
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.37
KOG0495|consensus	913		99.37
KOG2003|consensus	840		99.36
KOG0550|consensus	486		99.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.33
KOG0495|consensus	913		99.31
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
KOG3060|consensus	289		99.3
KOG0624|consensus	504		99.3
PRK14574	822	hmsH outer membrane protein; Provisional	99.29
KOG1128|consensus	777		99.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.28
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.26
KOG4162|consensus	799		99.26
PRK10803	263	tol-pal system protein YbgF; Provisional	99.26
KOG1840|consensus	508		99.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.25
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.25
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.25
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.24
KOG4162|consensus	799		99.23
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.23
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.22
KOG1127|consensus	1238		99.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.2
KOG1174|consensus	564		99.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.2
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.16
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.16
KOG1840|consensus	508		99.16
KOG1174|consensus	564		99.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.14
KOG1156|consensus	700		99.14
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.13
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.08
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.08
PRK11906	458	transcriptional regulator; Provisional	99.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.07
KOG1156|consensus	700		99.07
KOG1127|consensus	1238		99.07
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.06
PRK11906	458	transcriptional regulator; Provisional	99.05
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.05
PF13371	73	TPR_9: Tetratricopeptide repeat	99.04
PF13371	73	TPR_9: Tetratricopeptide repeat	99.04
KOG1128|consensus	777		99.04
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.04
PF12688	120	TPR_5: Tetratrico peptide repeat	99.03
PF13512	142	TPR_18: Tetratricopeptide repeat	99.03
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.01
KOG4555|consensus	175		99.01
KOG4642|consensus	284		99.01
PRK10803	263	tol-pal system protein YbgF; Provisional	99.0
KOG0543|consensus	397		98.97
KOG0376|consensus	476		98.94
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.94
KOG2376|consensus	652		98.94
KOG0545|consensus	329		98.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.92
PRK15331	165	chaperone protein SicA; Provisional	98.92
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.9
KOG3785|consensus	557		98.89
PF12688	120	TPR_5: Tetratrico peptide repeat	98.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.89
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.86
KOG0551|consensus	390		98.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.85
KOG1308|consensus	377		98.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.76
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.75
KOG4648|consensus	536		98.74
KOG4234|consensus	271		98.72
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.72
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.64
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.63
PLN03218	1060	maturation of RBCL 1; Provisional	98.62
KOG4340|consensus	459		98.61
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.59
PF13512	142	TPR_18: Tetratricopeptide repeat	98.58
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.51
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.51
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.5
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.49
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.49
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.48
KOG4642|consensus	284		98.47
PF13428	44	TPR_14: Tetratricopeptide repeat	98.46
PLN03218	1060	maturation of RBCL 1; Provisional	98.44
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.43
PF13428	44	TPR_14: Tetratricopeptide repeat	98.43
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.42
KOG1130|consensus	639		98.4
KOG4555|consensus	175		98.37
KOG0545|consensus	329		98.36
KOG1070|consensus	1710		98.35
KOG4340|consensus	459		98.34
PF13431	34	TPR_17: Tetratricopeptide repeat	98.34
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.34
PLN03077	857	Protein ECB2; Provisional	98.33
PLN03077	857	Protein ECB2; Provisional	98.33
PF13431	34	TPR_17: Tetratricopeptide repeat	98.3
KOG2053|consensus	932		98.28
KOG1915|consensus	677		98.27
KOG2796|consensus	366		98.27
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.19
KOG1130|consensus	639		98.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.16
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.16
KOG2796|consensus	366		98.14
KOG2376|consensus	652		98.14
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.13
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.13
KOG0376|consensus	476		98.12
KOG1070|consensus	1710		98.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.09
PRK04841	903	transcriptional regulator MalT; Provisional	98.08
KOG1308|consensus	377		98.06
KOG3081|consensus	299		98.04
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.93
KOG3785|consensus	557		97.91
KOG2471|consensus	696		97.91
KOG1941|consensus	518		97.86
KOG1586|consensus	288		97.86
KOG3081|consensus	299		97.83
KOG1915|consensus	677		97.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.81
PRK04841	903	transcriptional regulator MalT; Provisional	97.81
KOG2610|consensus	491		97.7
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.69
KOG1310|consensus	758		97.67
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.63
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.62
KOG0551|consensus	390		97.61
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.59
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.58
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.57
KOG1586|consensus	288		97.56
KOG0530|consensus	318		97.56
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.54
PRK10941	269	hypothetical protein; Provisional	97.52
KOG1585|consensus	308		97.52
KOG2396|consensus	568		97.51
PRK10941	269	hypothetical protein; Provisional	97.49
KOG1941|consensus	518		97.48
KOG4507|consensus	886		97.47
KOG2053|consensus	932		97.43
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.36
KOG4507|consensus	886		97.35
KOG2610|consensus	491		97.34
KOG3824|consensus	472		97.33
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.33
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.32
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.3
KOG2471|consensus	696		97.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.26
KOG3824|consensus	472		97.25
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.19
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.19
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.17
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.16
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.08
KOG2047|consensus	835		97.07
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.04
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.98
KOG3364|consensus	149		96.96
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.95
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.94
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.92
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.86
KOG3617|consensus	1416		96.8
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.75
KOG1550|consensus	552		96.72
KOG2047|consensus	835		96.64
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.63
KOG4814|consensus	872		96.62
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.6
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.58
KOG0530|consensus	318		96.51
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.51
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.5
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.42
KOG3617|consensus	1416		96.4
KOG1585|consensus	308		96.36
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.29
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.23
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.15
COG2912	269	Uncharacterized conserved protein [Function unknow	96.11
KOG0546|consensus	372		96.09
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.08
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.96
COG2912	269	Uncharacterized conserved protein [Function unknow	95.95
KOG1550|consensus	552		95.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.83
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.79
KOG3364|consensus	149		95.78
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.72
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.62
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.41
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.37
KOG2300|consensus	629		95.31
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.29
KOG1258|consensus	577		95.27
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.24
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.22
KOG2300|consensus	629		95.17
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.13
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.01
KOG1310|consensus	758		94.98
KOG1914|consensus	656		94.96
KOG4814|consensus	872		94.94
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.9
KOG2396|consensus	568		94.82
KOG0529|consensus	421		94.77
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.75
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.68
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.4
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.29
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.24
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.21
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.08
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.99
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.96
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.92
KOG0985|consensus	1666		93.72
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.69
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.57
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.29
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.12
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.01
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.92
KOG2422|consensus	665		92.79
KOG0529|consensus	421		92.72
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.53
KOG4151|consensus	748		92.33
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.24
KOG1914|consensus	656		92.17
KOG2581|consensus	493		91.83
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.59
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.53
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.33
COG3947	361	Response regulator containing CheY-like receiver a	91.29
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.22
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.1
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.77
KOG3807|consensus	556		90.13
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.78
KOG2041|consensus	1189		89.42
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.37
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.79
COG3947	361	Response regulator containing CheY-like receiver a	88.44
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.22
KOG0890|consensus	2382		88.11
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.98
KOG1839|consensus	1236		87.9
KOG1839|consensus	1236		87.77
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.35
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	87.14
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.1
KOG2422|consensus	665		86.65
KOG1258|consensus	577		86.4
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.17
KOG1464|consensus	440		85.93
KOG2041|consensus	1189		85.78
KOG0546|consensus	372		85.73
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.37
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	84.68
KOG0985|consensus	1666		84.68
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	84.59
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.35
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	84.01
KOG3616|consensus	1636		83.78
PHA02537	230	M terminase endonuclease subunit; Provisional	83.72
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.55
COG4941	415	Predicted RNA polymerase sigma factor containing a	82.46
PF12854	34	PPR_1: PPR repeat	82.15
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	81.52
KOG0686|consensus	466		81.47
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	81.17
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.93

>KOG0553|consensus

Probab=99.97  E-value=6.7e-28  Score=195.95  Aligned_cols=274  Identities=33%  Similarity=0.555  Sum_probs=224.4

Q ss_pred             chhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH----HHHHhchhhhhhhhccCCC
Q psy4130           4 KPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES----LFQLYYKDEVLQWYSNINF   79 (314)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~   79 (314)
                      +++ ++..|+.|+.........+....+.++.|+.|++.++.+.+   ++.....+.    .+.....     .   ...
T Consensus         3 ~~~-~~~~~~~~~~~~~~~~~~s~~~~esleva~qc~e~~f~~~~---~~~~~~~~~~~l~~~~~~~~-----~---~~~   70 (304)
T KOG0553|consen    3 SKK-LAAAIIQFLKQKSSFGWISEDGAESLEVAIQCLEAAFGFRR---DDVDRAEGTTLLDSFESAER-----H---PVE   70 (304)
T ss_pred             chh-HHHHHHHhHHHHhhcCCCCCcchhHHHHhHHHHHHHhCcch---hhccccccccHHHHHHHhcc-----C---ccc
Confidence            455 99999999999999999999999999999999999999999   443322222    2222222     0   011


Q ss_pred             CCCh-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130          80 SPTE-EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        80 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  158 (314)
                      .... .+...++.+...|+-+++.++|.+|+..|.+||.++|.++.+|+++|.+|.++|.++.|+++++.||.+||.+.+
T Consensus        71 ~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk  150 (304)
T KOG0553|consen   71 ILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK  150 (304)
T ss_pred             ccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence            1122 567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCC---------CCCcchHHHHH-Hhcc
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGS---------GGVFPGLSEMS-TKVL  228 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~---------~~~~~~~~~~~-~~~~  228 (314)
                      +|.+||.+|..+|++++|++.|+++|+++|++..++.+|..+..++++.......         .+.+|.+.... ..++
T Consensus       151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l~  230 (304)
T KOG0553|consen  151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFNGDLM  230 (304)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhccccc
Confidence            9999999999999999999999999999999999999999999999888844322         22226777777 4889


Q ss_pred             CChHHHHHHHHhhcCCCCCC--CCCCCCcchHHHHHHHHHHHHHHHHhhChHHHHHHHHHhCC
Q psy4130         229 SDPSIQQVFGELFANPGQQA--TATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGP  289 (314)
Q Consensus       229 ~~p~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l~~~~~~  289 (314)
                      ++|.+......+........  .........+..++.+++++.......+|.+.++++..+++
T Consensus       231 nnp~l~~~~~~m~~~~~~~~~~~~~~~~~~~i~~~~~a~~q~~~~~~~~n~p~~e~~~~~~~~  293 (304)
T KOG0553|consen  231 NNPQLMQLASQMMKDGALNGPKNGPDNKTDMIASLIGAGGQMPELSDGANPPLIENLRGNFGG  293 (304)
T ss_pred             cCHHHHHHHHHHhhcccccCccCCCcchhhHHHHHHhccCCCCccccccCCHHHHHHHhhcCC
Confidence            99999988888877211111  12222245678889999999999999999999999987743

>KOG4626|consensus

Probab=99.91  E-value=3.6e-24  Score=188.32  Aligned_cols=211  Identities=17%  Similarity=0.134  Sum_probs=175.9

Q ss_pred             cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch--hhhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130          21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK--DEVLQWYSNINFSPTEEVKIEAEKYKNLGNT   98 (314)
Q Consensus        21 ~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   98 (314)
                      .+.|.....+|++..||..|+++++++|++ .+.+++++.+|.....  .+..++     .++....|..+.++-++|.+
T Consensus       222 snLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~Avs~Y-----~rAl~lrpn~A~a~gNla~i  295 (966)
T KOG4626|consen  222 SNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDRAVSCY-----LRALNLRPNHAVAHGNLACI  295 (966)
T ss_pred             hhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchHHHHHH-----HHHHhcCCcchhhccceEEE
Confidence            456777778999999999999999999998 4557799988876653  333333     44456778889999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE  178 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  178 (314)
                      |+.+|..+-||..|++++++.|..+++|+|+|.++...|+..+|+.+|.+|+.++|+++++..+||.++.++|.+++|..
T Consensus       296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~  375 (966)
T KOG4626|consen  296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR  375 (966)
T ss_pred             EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .|+++++..|....+..+|+.++..+|++++|+      ..+.++++.-|.-.+....+++.+..
T Consensus       376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai------~~YkealrI~P~fAda~~NmGnt~ke  434 (966)
T KOG4626|consen  376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI------MCYKEALRIKPTFADALSNMGNTYKE  434 (966)
T ss_pred             HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH------HHHHHHHhcCchHHHHHHhcchHHHH
Confidence            999999999999999999999999999999998      66666666554444444444444333

>KOG4626|consensus

Probab=99.90  E-value=3.1e-23  Score=182.48  Aligned_cols=206  Identities=19%  Similarity=0.185  Sum_probs=180.8

Q ss_pred             ccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          22 RDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        22 ~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      +.+..+..+|.++-||.+|+++++++|++++ .+.+++.-....+. .++...    +.+++...|..+++.+++|+++.
T Consensus       291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~-Ay~NlanALkd~G~V~ea~~c----YnkaL~l~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  291 NLACIYYEQGLLDLAIDTYKRALELQPNFPD-AYNNLANALKDKGSVTEAVDC----YNKALRLCPNHADAMNNLGNIYR  365 (966)
T ss_pred             ceEEEEeccccHHHHHHHHHHHHhcCCCchH-HHhHHHHHHHhccchHHHHHH----HHHHHHhCCccHHHHHHHHHHHH
Confidence            4556777899999999999999999999944 46677775555553 233332    24456678899999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      .+|.+++|...|.++++..|+.+.++.|+|.+|.++|++++|+.+|+.++++.|..++++.++|..|..+|+...|+++|
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      .+++.++|...+++.+|+.++...|+..+|+      ..+..+.+.-|.-|+....+.
T Consensus       446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI------~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAI------QSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHhcCcHHHHHHhhHHHHhhccCCcHHHH------HHHHHHHccCCCCchhhhHHH
Confidence            9999999999999999999999999999999      888888887777776544333

>KOG1126|consensus

Probab=99.83  E-value=3.1e-20  Score=165.19  Aligned_cols=214  Identities=18%  Similarity=0.181  Sum_probs=160.1

Q ss_pred             ccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          22 RDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        22 ~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      +.|..+....++++|..+|+.+=+++|-..++..++-..++.-....+....    .+..++.++..++.|..+|++|--
T Consensus       358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L----aq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL----AQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH----HHHHHhhCCCCcHHHHHhcchhhh
Confidence            3555667788999999999999999997766655333223322222222222    233466778888999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCH----------------------------------HHHHHHHHHHHHccCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNP----------------------------------VYYCNRAASNNKLKNYKLALRDCQ  147 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~la~~~~~~~~~~~A~~~~~  147 (314)
                      +++++.|+++|++|+.+||..+                                  .+|+.+|.+|.++++++.|.-+|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            9999999999999998888643                                  567777777777777777777777


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       148 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      +|+.++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++..++++++|.      ..+.+.....
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal------~~LEeLk~~v  587 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL------QELEELKELV  587 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH------HHHHHHHHhC
Confidence            7777777777777777777777777777777777777777777777777777777777777777      7777777777


Q ss_pred             cCChHHHHHHHHhhcCCC
Q psy4130         228 LSDPSIQQVFGELFANPG  245 (314)
Q Consensus       228 ~~~p~~~~~l~~~~~~~~  245 (314)
                      |.+..+..+++..+.+++
T Consensus       588 P~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  588 PQESSVFALLGKIYKRLG  605 (638)
T ss_pred             cchHHHHHHHHHHHHHHc
Confidence            778888888887776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=3.7e-19  Score=168.05  Aligned_cols=208  Identities=13%  Similarity=0.040  Sum_probs=118.7

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....|++++|+.+|+++++++|++ ...++.++.++...++. ++....    .+....+|.++.+++.+|.+++..|+
T Consensus       340 ~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~~~g~~~eA~~~~----~~al~~~p~~~~~~~~lg~~~~~~g~  414 (615)
T TIGR00990       340 FKCLKGKHLEALADLSKSIELDPRV-TQSYIKRASMNLELGDPDKAEEDF----DKALKLNSEDPDIYYHRAQLHFIKGE  414 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3344566666666666666666633 12233444444433322 111111    11223345556666666666666666


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +++|+.+|++++.++|++..++.++|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++
T Consensus       415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhCCCCHHHH------HHHHH-HHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         185 ELDPNDPLYA------NNMQA-AMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       185 ~~~p~~~~~~------~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      .++|++...+      .+.+. ++...|++++|.      ..+..+....+.++..+..++.++...
T Consensus       495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~------~~~~kAl~l~p~~~~a~~~la~~~~~~  555 (615)
T TIGR00990       495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAE------NLCEKALIIDPECDIAVATMAQLLLQQ  555 (615)
T ss_pred             hcCCccccccccHHHHHHHHHHHHHHhhhHHHHH------HHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            6666532221      11122 222346666665      555555555555555566666665553

>KOG1126|consensus

Probab=99.81  E-value=3e-19  Score=158.96  Aligned_cols=182  Identities=18%  Similarity=0.213  Sum_probs=160.6

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      |-.+-.+++++.||+||++|++++|++ .-.+..++.  +.....+.+...+     ..++..+|.+..+|+.+|.+|.+
T Consensus       428 GNcfSLQkdh~~Aik~f~RAiQldp~f-aYayTLlGhE~~~~ee~d~a~~~f-----r~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  428 GNCFSLQKDHDTAIKCFKRAIQLDPRF-AYAYTLLGHESIATEEFDKAMKSF-----RKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             cchhhhhhHHHHHHHHHHHhhccCCcc-chhhhhcCChhhhhHHHHhHHHHH-----HhhhcCCchhhHHHHhhhhheec
Confidence            334455899999999999999999966 222333333  3333344444444     55677889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      +++++.|.-+|++|+.++|.+......+|.++.++|+.++|+..+++|+.++|.++-..+..|.+++.++++++|+..++
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE  581 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE  581 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.-++-|++..+++.+|.++.++|+.+.|.
T Consensus       582 eLk~~vP~es~v~~llgki~k~~~~~~~Al  611 (638)
T KOG1126|consen  582 ELKELVPQESSVFALLGKIYKRLGNTDLAL  611 (638)
T ss_pred             HHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence            999999999999999999999999999997

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=5.5e-19  Score=164.34  Aligned_cols=208  Identities=11%  Similarity=0.010  Sum_probs=163.8

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-----h-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-----D-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      ..+++++|+.+|+++++++|++. ..+..++.++.....     . ...........++...+|+++.++..+|.++...
T Consensus       273 ~~~~~~~A~~~~~~Al~ldP~~a-~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        273 TPYSLQQALKLLTQCVNMSPNSI-APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             CHHHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            45678999999999999999552 234445544432211     0 0001111123455667888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      |++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..++.++.+++..|++++|+..+++
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887888888889999999999999


Q ss_pred             HHhhC-CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         183 AAELD-PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       183 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++..+ |+++.++..++.++..+|++++|.      ..+.......+.+...+..+...+..
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~------~~~~~~~~~~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELAR------KLTKEISTQEITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHH------HHHHHhhhccchhHHHHHHHHHHHhc
Confidence            99875 788999999999999999999997      55544444434444445555544443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=2.1e-18  Score=162.91  Aligned_cols=193  Identities=17%  Similarity=0.158  Sum_probs=151.8

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCC--chhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPA--SNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~--~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      .+++++|+++|+++++.++..+..  .+..++.++...++. ++...    +.+....+|.....|..+|.++...|+++
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~----~~kal~l~P~~~~~~~~la~~~~~~g~~~  382 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD----LSKSIELDPRVTQSYIKRASMNLELGDPD  382 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence            367889999999999775321132  233444455444432 22222    13334456777888899999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +|+..|+++++.+|.++.+|+.+|.++...|++++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++..
T Consensus       383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  462 (615)
T TIGR00990       383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN  462 (615)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       187 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      .|+++.++..+|.++...|++++|+      ..+..+....+.+..
T Consensus       463 ~P~~~~~~~~lg~~~~~~g~~~~A~------~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       463 FPEAPDVYNYYGELLLDQNKFDEAI------EKFDTAIELEKETKP  502 (615)
T ss_pred             CCCChHHHHHHHHHHHHccCHHHHH------HHHHHHHhcCCcccc
Confidence            9999999999999999999999997      777777766655433

>KOG0548|consensus

Probab=99.81  E-value=1.5e-17  Score=144.91  Aligned_cols=205  Identities=27%  Similarity=0.374  Sum_probs=162.7

Q ss_pred             HHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-HHHHhchhhhhhhhccCCCCCChhhHHHHHH
Q psy4130          13 ITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES-LFQLYYKDEVLQWYSNINFSPTEEVKIEAEK   91 (314)
Q Consensus        13 ~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (314)
                      ..+|..++...|-.+...++++.|+.+|++++...-+    +...-.. ........ ...        ..-.+|..+..
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~-~e~--------~a~~~pe~A~e  360 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKE-AER--------KAYINPEKAEE  360 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHH-HHH--------HHhhChhHHHH
Confidence            3456666666777777889999999999998875541    1110000 11111111 111        11234455677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN  171 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  171 (314)
                      ....|+.+++.|+|..|+.+|.++|..+|+++.+|.|+|.||.+++++..|+.+++++++++|++..+|.+.|.++..+.
T Consensus       361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  361 EREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +|+.|.+.|.++++++|++.++...+..|...+......          .+..+..+.||+++.++...
T Consensus       441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~----------ee~~~r~~~dpev~~il~d~  499 (539)
T KOG0548|consen  441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETP----------EETKRRAMADPEVQAILQDP  499 (539)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCH----------HHHHHhhccCHHHHHHHcCH
Confidence            999999999999999999999999999998876333333          36667788999998775543

>KOG1155|consensus

Probab=99.80  E-value=9.4e-19  Score=149.74  Aligned_cols=208  Identities=17%  Similarity=0.122  Sum_probs=169.4

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      ......+++.|+..|+.+.+.+|-..++.+..-..+|............    +.....+...++...-+|+.|.-+++.
T Consensus       271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA----~~v~~idKyR~ETCCiIaNYYSlr~eH  346 (559)
T KOG1155|consen  271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA----QNVSNIDKYRPETCCIIANYYSLRSEH  346 (559)
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH----HHHHHhccCCccceeeehhHHHHHHhH
Confidence            3445789999999999999999977666664434455444433222221    122344556677888999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ++|+.+|+++++++|....+|..+|.=|..+++...|+..|++|+.++|.+-.+|+.||.+|..++-+.=|+-+|++|++
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +.|+++..|..||.||.++++.++|+      .-+..+...--.+......+++++.+
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAi------KCykrai~~~dte~~~l~~LakLye~  478 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAI------KCYKRAILLGDTEGSALVRLAKLYEE  478 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHH------HHHHHHHhccccchHHHHHHHHHHHH
Confidence            99999999999999999999999998      55555444333344555566666555

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.79  E-value=8.9e-18  Score=128.40  Aligned_cols=114  Identities=19%  Similarity=0.150  Sum_probs=109.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN  171 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  171 (314)
                      ++.+|.++...|++++|+..|++++..+|.+..+|.++|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      ++++|+..|++++++.|+++.++.+++.+...++
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887664

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.75  E-value=3.6e-17  Score=158.83  Aligned_cols=200  Identities=15%  Similarity=0.131  Sum_probs=153.8

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ...|++++|+.+|++++...|..  .....++..+...++. ++..+..    +.....|.....+..++......|+++
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~----qAL~l~P~~~~l~~~La~~l~~~Gr~~  593 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQ----QAEQRGLGDNALYWWLHAQRYIPGQPE  593 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHH----HHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence            45778888888888877665521  1223334444444432 2222221    112233444555666666667779999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +|+..|+++++.+|+ +.++.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++++
T Consensus       594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l  672 (987)
T PRK09782        594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG  672 (987)
T ss_pred             HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999996 8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       187 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +|+++.++.+++.++..+|++++|.      ..+..++...|++..+...++.+
T Consensus       673 ~P~~~~a~~nLA~al~~lGd~~eA~------~~l~~Al~l~P~~a~i~~~~g~~  720 (987)
T PRK09782        673 LPDDPALIRQLAYVNQRLDDMAATQ------HYARLVIDDIDNQALITPLTPEQ  720 (987)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHhcCCCCchhhhhhhHH
Confidence            9999999999999999999999998      77777777777766555444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.75  E-value=8.7e-17  Score=126.52  Aligned_cols=151  Identities=17%  Similarity=0.052  Sum_probs=129.8

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .|+.+...|++..|...++++|+.+|   .+                                   ..+|..++.+|.+.
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DP---s~-----------------------------------~~a~~~~A~~Yq~~   82 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDP---SY-----------------------------------YLAHLVRAHYYQKL   82 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc---cc-----------------------------------HHHHHHHHHHHHHc
Confidence            44555667888888888888888888   33                                   34788888999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      |+.+.|.+.|++++.++|.+.+++.|.|..+..+|++++|.+.|++|+..  .|..+..|-++|.|..+.|+++.|..+|
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence            99999999999999999999999999999999999999999999999864  2345688999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         181 TKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++++++|+++.....++..+...|++-.|.
T Consensus       163 ~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         163 KRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             HHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            9999999999999999999999999998884

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.75  E-value=6.4e-17  Score=153.08  Aligned_cols=209  Identities=11%  Similarity=0.052  Sum_probs=113.8

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ......|+++.|+..|++++..+|+++ .....++.++...+..+.+..   .+.+.....|.++.++..+|.++...|+
T Consensus        84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~-~a~~~la~~l~~~g~~~~Ai~---~l~~Al~l~P~~~~a~~~la~~l~~~g~  159 (656)
T PRK15174         84 ISPLASSQPDAVLQVVNKLLAVNVCQP-EDVLLVASVLLKSKQYATVAD---LAEQAWLAFSGNSQIFALHLRTLVLMDK  159 (656)
T ss_pred             hhHhhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            334446666666666666666666442 223333444433332211111   0111122333344444444444444444


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHH----------------------------------HHHHHHHHHccCHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYY----------------------------------CNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~----------------------------------~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      +++|+..+++++..+|.++.++                                  ..++.++...|++++|+..+++++
T Consensus       160 ~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al  239 (656)
T PRK15174        160 ELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL  239 (656)
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4444444444444443333222                                  223445555666666666666666


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         151 KIDPHYAKAYGRMGLAYTQMNDYKA----ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       151 ~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      ..+|+++.+++.+|.++...|++++    |+..|+++++++|++..++..++.++...|++++|.      ..+..+...
T Consensus       240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~------~~l~~al~l  313 (656)
T PRK15174        240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI------PLLQQSLAT  313 (656)
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHh
Confidence            6666666666666666666666664    566666666666666666666666666666666666      666666666


Q ss_pred             ccCChHHHHHHHHhhcC
Q psy4130         227 VLSDPSIQQVFGELFAN  243 (314)
Q Consensus       227 ~~~~p~~~~~l~~~~~~  243 (314)
                      .|.++.++..++.++..
T Consensus       314 ~P~~~~a~~~La~~l~~  330 (656)
T PRK15174        314 HPDLPYVRAMYARALRQ  330 (656)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            66666666666655444

>KOG1125|consensus

Probab=99.75  E-value=5e-18  Score=149.04  Aligned_cols=210  Identities=15%  Similarity=0.064  Sum_probs=172.4

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ......|++.+|+=+|+.+++.+|.+.+ ...+|+........+.....   .+.++.+.+|++..++..+|..|...|.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~hae-AW~~LG~~qaENE~E~~ai~---AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQHAE-AWQKLGITQAENENEQNAIS---ALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChHHHH-HHHHhhhHhhhccchHHHHH---HHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            3445588899999999999999994422 24455665555544322222   3456678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCC-------------------------------------------CHHHHHHHHHHHHHccCHHH
Q psy4130         105 PEQAVIEYSKAIDCDNS-------------------------------------------NPVYYCNRAASNNKLKNYKL  141 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~-------------------------------------------~~~~~~~la~~~~~~~~~~~  141 (314)
                      -.+|+.++.+.|...|.                                           +++++..||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            99999999988765432                                           45788899999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHH
Q psy4130         142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLS  221 (314)
Q Consensus       142 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  221 (314)
                      |++||+.||..+|++...|.+||-++..-.+.++|+..|++|+++.|....++++||.+++.+|.|.+|+      +.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~------~hlL  522 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV------KHLL  522 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH------HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998      7777


Q ss_pred             HHHHhccC----------ChHHHHHHHHhhcCC
Q psy4130         222 EMSTKVLS----------DPSIQQVFGELFANP  244 (314)
Q Consensus       222 ~~~~~~~~----------~p~~~~~l~~~~~~~  244 (314)
                      .++.....          +..+|..+...+.-+
T Consensus       523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~  555 (579)
T KOG1125|consen  523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAM  555 (579)
T ss_pred             HHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence            76654433          235788887665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.74  E-value=9.1e-17  Score=152.02  Aligned_cols=146  Identities=9%  Similarity=0.034  Sum_probs=132.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL----ALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ...++.++...|++++|+..|++++..+|+++.++.++|.++...|++++    |+..|++++.++|+++.++..+|.++
T Consensus       215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  294 (656)
T PRK15174        215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            34567888899999999999999999999999999999999999999986    89999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ...|++++|+..+++++.++|+++.++..++.++...|++++|.      ..+..+....+.++.....++.++..
T Consensus       295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~------~~l~~al~~~P~~~~~~~~~a~al~~  364 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS------DEFVQLAREKGVTSKWNRYAAAALLQ  364 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHhCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998      77777777777776655555555544

>KOG1155|consensus

Probab=99.74  E-value=8.5e-17  Score=137.89  Aligned_cols=179  Identities=13%  Similarity=0.100  Sum_probs=113.0

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ..++++++|+.+|+++++++|.+ .+.+..+|.-|.......++..   .+..+.+.+|.+.++|+.+|.+|.-.+-+.=
T Consensus       341 Slr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~---sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y  416 (559)
T KOG1155|consen  341 SLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIE---SYRRAVDINPRDYRAWYGLGQAYEIMKMHFY  416 (559)
T ss_pred             HHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHH---HHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence            34778899999999999999955 3333344444443333222221   1234455666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE--  185 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--  185 (314)
                      |+-+|++|+.+-|.++..|..+|.||.+.++.++|+.+|.+++..+..+..++..||.+|.++++.++|..+|++.++  
T Consensus       417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666666666666665  


Q ss_pred             -----hCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         186 -----LDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       186 -----~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                           .+|+-..+...|+.-+.+.+++++|
T Consensus       497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A  526 (559)
T KOG1155|consen  497 ELEGEIDDETIKARLFLAEYFKKMKDFDEA  526 (559)
T ss_pred             HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence                 3343444555566666666666666

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.74  E-value=4.4e-16  Score=128.55  Aligned_cols=170  Identities=19%  Similarity=0.140  Sum_probs=136.4

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ....|++++|++.++++++.+|   .                                   +...+..+|.++...|+++
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p---~-----------------------------------~~~~~~~la~~~~~~~~~~   82 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDP---D-----------------------------------DYLAYLALALYYQQLGELE   82 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCc---c-----------------------------------cHHHHHHHHHHHHHcCCHH
Confidence            3446677777777777777666   2                                   2346778888999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +|+..|++++..+|.+..++.++|.++...|++++|+..+++++...  |.....+..+|.++...|++++|...|.+++
T Consensus        83 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  162 (234)
T TIGR02521        83 KAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL  162 (234)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999888889999999999999999999999998754  4566788889999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         185 ELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      ..+|++..++..++.++...|++++|.      ..+.......+.++..+..+..+
T Consensus       163 ~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       163 QIDPQRPESLLELAELYYLRGQYKDAR------AYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             HhCcCChHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHH
Confidence            999988888999999999999999887      66666666555555555444444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.73  E-value=1.3e-16  Score=160.36  Aligned_cols=212  Identities=16%  Similarity=0.145  Sum_probs=166.5

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCC-CCChhhH---------HHHHHH
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINF-SPTEEVK---------IEAEKY   92 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~---------~~~~~~   92 (314)
                      |......|++++|+..|+++++.+|++ ......++.++...++.+ +......... .......         ......
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            444556899999999999999999955 234456666776665432 3322211111 1111000         012233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH------
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA------  166 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------  166 (314)
                      ..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|++.|+++++++|++..++..++.+      
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            45688999999999999999999999999999999999999999999999999999999999998776655444      


Q ss_pred             ------------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         167 ------------------------------------YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       167 ------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                                                          +...|++++|+..|+++++++|+++.+++.++.++...|++++|
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                                45679999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         211 SGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      .      ..+..++...+.+|+.+..++.++.
T Consensus       515 ~------~~l~~al~~~P~~~~~~~a~al~l~  540 (1157)
T PRK11447        515 D------ALMRRLAQQKPNDPEQVYAYGLYLS  540 (1157)
T ss_pred             H------HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            8      8888888888899987766665443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.71  E-value=1.5e-15  Score=130.41  Aligned_cols=124  Identities=19%  Similarity=0.151  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|++..+|.++|.+
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +...|++++|+..|+++++++|+++.....+ .+....++.++|.
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~  185 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAK  185 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHH
Confidence            9999999999999999999999987422222 2334556777776

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.71  E-value=6.6e-16  Score=138.27  Aligned_cols=211  Identities=12%  Similarity=0.062  Sum_probs=159.8

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....+++++|+..|+++++.+|++. .....++.++...+.. .+.....................+..+|.++...|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETV-ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            34567899999999999999999432 2344555566555543 222222222222222223345678999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-----KAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      +++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|.+.     ..+..+|.++...|++++|+..
T Consensus       123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888753     3567889999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC-hHHHHHHHHhhcC
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD-PSIQQVFGELFAN  243 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-p~~~~~l~~~~~~  243 (314)
                      |+++++.+|++..++..++.++...|++++|.      ..+..+....+.+ +..+..+..++..
T Consensus       203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        203 LKKALAADPQCVRASILLGDLALAQGDYAAAI------EALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997      6666655544433 2334445544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.71  E-value=2.1e-16  Score=120.85  Aligned_cols=123  Identities=13%  Similarity=0.141  Sum_probs=116.3

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP  188 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  188 (314)
                      ...|+++++++|++   ++.+|.++...|++++|+.+|++++.++|.+..+|+.+|.++...|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999875   667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +++.+++++|.++..+|++++|+      ..+..++...+.+++.+...+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi------~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAR------EAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999      99999999999999988777765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.70  E-value=2.4e-15  Score=134.63  Aligned_cols=207  Identities=14%  Similarity=0.087  Sum_probs=134.0

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCC-CCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINF-SPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      +...|++++|+.+|+++++.+|.. ......++.++...++.. +......... ............+..+|..+...|+
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  195 (389)
T PRK11788        117 YLKAGLLDRAEELFLQLVDEGDFA-EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD  195 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence            344677777888888877776622 112223333444433322 2222111111 0111111233456677777788888


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-AKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      +++|+..|+++++.+|.+..+++.+|.++...|++++|+..+++++..+|.+ ...+..++.++...|++++|+..++++
T Consensus       196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888888888888777778888888888888888888888888777765 356677778888888888888888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ++.+|+...+ ..++.++...|++++|.      ..+.++.+..|.++.+..++...+
T Consensus       276 ~~~~p~~~~~-~~la~~~~~~g~~~~A~------~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        276 LEEYPGADLL-LALAQLLEEQEGPEAAQ------ALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHhCCCchHH-HHHHHHHHHhCCHHHHH------HHHHHHHHhCcCHHHHHHHHHHhh
Confidence            8887766443 77778888888888886      666666666666665555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=6e-16  Score=150.36  Aligned_cols=177  Identities=12%  Similarity=-0.037  Sum_probs=150.3

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHh---c-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY---Y-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      .....|++++|+.+|+++++.+|   ........ +....   + ..++....    .+.....|. +..+..+|.++.+
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~P---~~~~l~~~-La~~l~~~Gr~~eAl~~~----~~AL~l~P~-~~a~~~LA~~l~~  621 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRGL---GDNALYWW-LHAQRYIPGQPELALNDL----TRSLNIAPS-ANAYVARATIYRQ  621 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCC---ccHHHHHH-HHHHHHhCCCHHHHHHHH----HHHHHhCCC-HHHHHHHHHHHHH
Confidence            34568899999999999999998   44332221 22111   2 23333332    223344554 7789999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+
T Consensus       622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++++++|++..+....+.+.....+++.|.
T Consensus       702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~  731 (987)
T PRK09782        702 LVIDDIDNQALITPLTPEQNQQRFNFRRLH  731 (987)
T ss_pred             HHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999888886

>KOG0547|consensus

Probab=99.70  E-value=1.7e-16  Score=136.88  Aligned_cols=172  Identities=17%  Similarity=0.165  Sum_probs=124.7

Q ss_pred             HHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHH
Q psy4130          14 TFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYK   93 (314)
Q Consensus        14 ~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (314)
                      .++..++...|.....+|+.-.|.+.|+++|.++|.+ ...++.++..|......+.-.-   ....+...+|.+++.|+
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~---~F~~A~~ldp~n~dvYy  398 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWK---DFNKAEDLDPENPDVYY  398 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHH---HHHHHHhcCCCCCchhH
Confidence            5566666677777777888888888888888888844 2334444545544433222111   22344566777788888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  173 (314)
                      .+|..++-.++|++|+..|+++++++|.+.-++..++.+.+++++++++...|+.+++..|+.++.+...|.++..+++|
T Consensus       399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF  478 (606)
T KOG0547|consen  399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF  478 (606)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence            88888888888888888888888888888888888888888888888888888888888888888877777777777777


Q ss_pred             HHHHHHHHHHHhhCCC
Q psy4130         174 KAALEAYTKAAELDPN  189 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~  189 (314)
                      +.|++.|.+++++.|.
T Consensus       479 d~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  479 DKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            7777777777777766

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.70  E-value=1e-15  Score=153.86  Aligned_cols=212  Identities=13%  Similarity=0.074  Sum_probs=143.1

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCCh-----hhHHHHHHHHHHHHHH
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTE-----EVKIEAEKYKNLGNTA   99 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~   99 (314)
                      ..+...|++++|+++|+++++++|++. .....++.+|......++..+..........     ........+..+|..+
T Consensus       393 ~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~  471 (1157)
T PRK11447        393 DVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL  471 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            344456667777777777777777331 1122333344322222222221111000000     0011133466778888


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH--------------------
Q psy4130         100 MQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA--------------------  159 (314)
Q Consensus       100 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------  159 (314)
                      ...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++.+|+++.+                    
T Consensus       472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~  551 (1157)
T PRK11447        472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH  551 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            889999999999999999999999999999999999999999999999988888876643                    


Q ss_pred             ------------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         160 ------------------------------------------------------YGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       160 ------------------------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                                                                            +..+|.++...|++++|+..|+++++
T Consensus       552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~  631 (1157)
T PRK11447        552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT  631 (1157)
T ss_pred             HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                                                  34466677778888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .+|+++.++..++.++...|++++|.      ..+.......+.++..+..++.++..
T Consensus       632 ~~P~~~~a~~~la~~~~~~g~~~eA~------~~l~~ll~~~p~~~~~~~~la~~~~~  683 (1157)
T PRK11447        632 REPGNADARLGLIEVDIAQGDLAAAR------AQLAKLPATANDSLNTQRRVALAWAA  683 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHhccCCCChHHHHHHHHHHHh
Confidence            88888888888888888888888887      66665555556667766666666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.69  E-value=4.4e-16  Score=144.99  Aligned_cols=161  Identities=14%  Similarity=0.026  Sum_probs=141.5

Q ss_pred             CCCCChhhHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          78 NFSPTEEVKIEAEKYKNLGNTAMQQ---------DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      ..++...+|..+.+|..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++++|+..|++
T Consensus       284 ~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~  363 (553)
T PRK12370        284 LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ  363 (553)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3455677888899999999887633         4589999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc-
Q psy4130         149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV-  227 (314)
Q Consensus       149 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-  227 (314)
                      +++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.++...|++++|.      ..+....... 
T Consensus       364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~------~~~~~~l~~~~  437 (553)
T PRK12370        364 ANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI------RLGDELRSQHL  437 (553)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH------HHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999888777777788899999997      6666666654 


Q ss_pred             cCChHHHHHHHHhhcCC
Q psy4130         228 LSDPSIQQVFGELFANP  244 (314)
Q Consensus       228 ~~~p~~~~~l~~~~~~~  244 (314)
                      +.+|..+..++.++...
T Consensus       438 p~~~~~~~~la~~l~~~  454 (553)
T PRK12370        438 QDNPILLSMQVMFLSLK  454 (553)
T ss_pred             ccCHHHHHHHHHHHHhC
Confidence            66788888888776554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.69  E-value=8.4e-16  Score=150.99  Aligned_cols=209  Identities=16%  Similarity=0.081  Sum_probs=156.4

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ......|++++|+++|+++++.+|++. .....++.++...+... +....    .+.....|.+...+..++.++...|
T Consensus       473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~  547 (899)
T TIGR02917       473 AIYLGKGDLAKAREAFEKALSIEPDFF-PAAANLARIDIQEGNPDDAIQRF----EKVLTIDPKNLRAILALAGLYLRTG  547 (899)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCcCcHHHHHHHHHHHHHcC
Confidence            344557888888999988888888442 22334444554444322 22221    1223344556777888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++..|..+|.++...|++++|+..|+++
T Consensus       548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  627 (899)
T TIGR02917       548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL  627 (899)
T ss_pred             CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      ++.+|.++.++..++.++...|++++|.      ..+..+....+.++..+..+..++...
T Consensus       628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~l~~~~~~~  682 (899)
T TIGR02917       628 LALQPDSALALLLLADAYAVMKNYAKAI------TSLKRALELKPDNTEAQIGLAQLLLAA  682 (899)
T ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            8888888888888888888888888887      777777777777777777777665553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.69  E-value=4.4e-15  Score=116.97  Aligned_cols=152  Identities=17%  Similarity=0.081  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ..-..+...+|.-|+..|++..|...++++|+.+|.+..+|..+|.+|.+.|+.+.|.+.|++|++++|++.+++.+.|.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            34467889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         166 AYTQMNDYKAALEAYTKAAEL--DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .++.+|++++|...|++|+..  .|.-...+.|+|.|..+.|+.+.|.      ..+...+...++.|.....+......
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~------~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE------EYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH------HHHHHHHHhCcCCChHHHHHHHHHHh
Confidence            999999999999999999984  2345779999999999999999998      88888888888888665555555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.68  E-value=3.2e-15  Score=146.91  Aligned_cols=151  Identities=18%  Similarity=0.118  Sum_probs=138.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..+..+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  199 (899)
T TIGR02917       120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK  199 (899)
T ss_pred             CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      |.++...|++++|+..|++++..+|+++.++..++.++...|++++|.      ..+..+.+..+.++......+.+
T Consensus       200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~  270 (899)
T TIGR02917       200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAE------KHADALLKKAPNSPLAHYLKALV  270 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998      77777777777776655444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.67  E-value=5.1e-15  Score=111.47  Aligned_cols=105  Identities=11%  Similarity=0.004  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ++.-+..+.+|..++..|++++|...|+..+.++|.++..|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      |++..|+.+.|++.|+.++.....+
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999987443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.67  E-value=7.7e-15  Score=118.13  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCcHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASN-NKLKN--YKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      .+|+++..|..+|.++...|++++|+..|+++++++|+++.++.++|.++ ...|+  +++|...++++++.+|+++.++
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            34445668888999999999999999999999999999999999998875 66677  5889999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPL  192 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  192 (314)
                      +.+|.+++..|++++|+.+|+++++++|.+..
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999988886543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.66  E-value=5e-16  Score=132.76  Aligned_cols=208  Identities=19%  Similarity=0.145  Sum_probs=120.3

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....++++.|+.+|++++..++..+.+.. .+..++.......+....    ...-. ...++..+.....++...+++
T Consensus        53 La~~~~~~~~A~~ay~~l~~~~~~~~~~~~-~l~~l~~~~~~~~A~~~~----~~~~~-~~~~~~~l~~~l~~~~~~~~~  126 (280)
T PF13429_consen   53 LAWSLGDYDEAIEAYEKLLASDKANPQDYE-RLIQLLQDGDPEEALKLA----EKAYE-RDGDPRYLLSALQLYYRLGDY  126 (280)
T ss_dssp             -----------------------------------------------------------------------H-HHHTT-H
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccccccc----ccccc-cccccchhhHHHHHHHHHhHH
Confidence            445688999999999999999885434422 222232222222222221    11111 224456677778888999999


Q ss_pred             HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCD--NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       106 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      +++...++++....  +.++.+|..+|.++.+.|++++|+.+++++++++|+++.++..++.++...|+++++...+...
T Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~  206 (280)
T PF13429_consen  127 DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL  206 (280)
T ss_dssp             HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            99999999977655  6788899999999999999999999999999999999999999999999999999999999888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      .+..|.++..+..++.++..+|++++|.      ..+....+..+.||.+...++.++...|
T Consensus       207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al------~~~~~~~~~~p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  207 LKAAPDDPDLWDALAAAYLQLGRYEEAL------EYLEKALKLNPDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHH-HTSCCHCHHHHHHHHHHT-HHHHH------HHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred             HHHCcCHHHHHHHHHHHhcccccccccc------cccccccccccccccccccccccccccc
Confidence            8888888889999999999999999998      8999999999999999999998877754

>PLN02789 farnesyltranstransferase

Probab=99.66  E-value=1.1e-14  Score=125.27  Aligned_cols=151  Identities=12%  Similarity=0.001  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQD-KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY--KLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .+..+|..++.++...+ ++++++..+++++..+|.+..+|+.++.++...++.  ++++.++.++++.+|++..+|..+
T Consensus        69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R  148 (320)
T PLN02789         69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHR  148 (320)
T ss_pred             hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34456666666666666 467777777777777777777777777777666653  566777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc---cc----cCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN---SS----SASGSGGVFPGLSEMSTKVLSDPSIQQV  236 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~----~A~~~~~~~~~~~~~~~~~~~~p~~~~~  236 (314)
                      +.++...|++++|++++.++++.+|.|..+|..++.+....++   .+    ++.      .-..+.+...|.|...|..
T Consensus       149 ~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el------~y~~~aI~~~P~N~SaW~Y  222 (320)
T PLN02789        149 QWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL------KYTIDAILANPRNESPWRY  222 (320)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH------HHHHHHHHhCCCCcCHHHH
Confidence            7777777777777777777777777777777777776665522   21    111      2223555666666677777


Q ss_pred             HHHhhcC
Q psy4130         237 FGELFAN  243 (314)
Q Consensus       237 l~~~~~~  243 (314)
                      ++.++..
T Consensus       223 l~~ll~~  229 (320)
T PLN02789        223 LRGLFKD  229 (320)
T ss_pred             HHHHHhc
Confidence            7766655

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.66  E-value=3.4e-15  Score=120.18  Aligned_cols=131  Identities=15%  Similarity=0.089  Sum_probs=120.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCC--HHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY-TQMND--YKAALE  178 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~  178 (314)
                      .++.++++..++++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      .++++++.+|++..++..+|.++...|++++|+      ..+..+.+..+.+.+-..++.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai------~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAI------ELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCCCCccHHHHHH
Confidence            999999999999999999999999999999998      888888887777665554443

>KOG2003|consensus

Probab=99.66  E-value=1.3e-14  Score=124.58  Aligned_cols=223  Identities=13%  Similarity=0.068  Sum_probs=184.5

Q ss_pred             HHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch--hhhhhhhccCCCCCChhhHH
Q psy4130          10 TSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK--DEVLQWYSNINFSPTEEVKI   87 (314)
Q Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   87 (314)
                      +++-.|-...+.+.|-.....|++++|.+.|.+++..+... ...-++++.-+...+.  .+..++.     +.-..-.+
T Consensus       483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~-----klh~il~n  556 (840)
T KOG2003|consen  483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFL-----KLHAILLN  556 (840)
T ss_pred             hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHH-----HHHHHHHh
Confidence            33334444456677777788999999999999999877733 2233445554444442  2222321     11223346


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ++++++.++++|....+..+|+++|-++..+-|+++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+..-+||..|
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      ....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|.      ..+.+..+++|.|-+-...+-.+....
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~------d~yk~~hrkfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF------DLYKDIHRKFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHhCccchHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999      999999999999998777776665554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.66  E-value=6.8e-15  Score=126.39  Aligned_cols=154  Identities=18%  Similarity=0.053  Sum_probs=114.3

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCC---chhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPA---SNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....+.+|..+.+++...|-.++.   .++..+.+|...+....+..   ...+....+|+++.+|+.+|.++...|++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~---~~~~Al~l~P~~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARN---DFSQALALRPDMADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence            3467788999999999644422132   34455556666554332222   12334556778889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ++|+..|+++++++|++..+|.++|.++...|++++|+..++++++++|+++.....+ .+....+++++|+..|.+++.
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999987422222 223456678888888866554


Q ss_pred             h
Q psy4130         186 L  186 (314)
Q Consensus       186 ~  186 (314)
                      .
T Consensus       194 ~  194 (296)
T PRK11189        194 K  194 (296)
T ss_pred             h
Confidence            3

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.65  E-value=5.7e-15  Score=122.95  Aligned_cols=151  Identities=16%  Similarity=0.095  Sum_probs=129.9

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+..|++++..+|   .++                                ....+++.+|.+++..|++
T Consensus        42 ~~~~~~~~~~A~~~~~~~~~~~p---~~~--------------------------------~~~~a~~~la~~~~~~~~~   86 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEALESRYP---FSP--------------------------------YAEQAQLDLAYAYYKSGDY   86 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---Cch--------------------------------hHHHHHHHHHHHHHhcCCH
Confidence            33457788888888888888888   332                                2245789999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCcHHHH--------------
Q psy4130         106 EQAVIEYSKAIDCDNSNPV---YYCNRAASNNKL--------KNYKLALRDCQIAIKIDPHYAKAY--------------  160 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~--------------  160 (314)
                      ++|+..|+++++.+|+++.   +++.+|.++...        |++++|+..+++++..+|++..++              
T Consensus        87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~  166 (235)
T TIGR03302        87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA  166 (235)
T ss_pred             HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence            9999999999999998776   689999999887        889999999999999999986442              


Q ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccccCC
Q psy4130         161 ---GRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       161 ---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~  211 (314)
                         ..+|.++...|++.+|+..|++++...|+.   +.++..++.++..+|++++|.
T Consensus       167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence               467888999999999999999999997764   579999999999999999997

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.64  E-value=8.1e-15  Score=111.16  Aligned_cols=118  Identities=22%  Similarity=0.257  Sum_probs=107.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ..+|.+....+.+|..++..|++++|+..|++++..+|.++.+|.++|.++...|++++|+.++++++..+|.++..++.
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            34455667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      +|.++...|++++|+..|+++++++|++.........+
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            99999999999999999999999999987755444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.64  E-value=9.3e-16  Score=131.10  Aligned_cols=180  Identities=21%  Similarity=0.225  Sum_probs=111.2

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ...+++++|+++++++++.+++. .... .+..++...... ...........  ....+.++..|..+|.++.+.|+++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~-~~l~-~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~  163 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDGDP-RYLL-SALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPD  163 (280)
T ss_dssp             --------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHH
T ss_pred             ccccccccccccccccccccccc-chhh-HHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHH
Confidence            45789999999999998876621 1111 112233333322 22221111110  1223467889999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +|+.+|+++++++|+++.++..++.++...|+++++...+.......|.++..|..+|.++..+|++++|+.+|+++++.
T Consensus       164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         187 DPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       187 ~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +|+++.++..++.++...|+.++|.
T Consensus       244 ~p~d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  244 NPDDPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             STT-HHHHHHHHHHHT---------
T ss_pred             ccccccccccccccccccccccccc
Confidence            9999999999999999999999997

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.63  E-value=2.8e-14  Score=117.72  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELD--PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +...|++++|+..|++++...  |.....+..++.++...|++++|.      ..+.......+.++..+..++.++...
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE------KYLTRALQIDPQRPESLLELAELYYLR  182 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence            999999999999999999864  456778999999999999999998      888888888888888888888776653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.63  E-value=1.1e-14  Score=140.42  Aligned_cols=206  Identities=10%  Similarity=0.017  Sum_probs=165.3

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ..+++++|+..|+++++..|..+.....+++.+|...+.. ++......+.................++..+...+++++
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence            4688999999999999987643355455566666655543 333332222211110001113456777788899999999


Q ss_pred             HHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130         108 AVIEYSKAIDCDNS---------------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus       108 A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      |+..++++...+|.               ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~  408 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW  408 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            99999999998773               235678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +++|++.++++++++|++..+++.++.++..++++++|.      ..+..+.+..|.+|.+..+-...
T Consensus       409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~------~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD------VLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998      88999999999999876655544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.62  E-value=1.9e-14  Score=126.34  Aligned_cols=115  Identities=33%  Similarity=0.482  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN  171 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  171 (314)
                      +...|..++..|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.++++++.++|.++.+|+++|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            66779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      ++++|+..|+++++++|+++.+...++.|...+.+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999777643

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.62  E-value=5.2e-14  Score=113.21  Aligned_cols=173  Identities=14%  Similarity=0.091  Sum_probs=143.0

Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCchh-hHHH-HHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          32 GIEVAVECLCKAYDIPDNIDPASNV-DIES-LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        32 ~~~~Ai~~~~~al~~~p~~~~~~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      +...++..+-+.+..+|   ++..+ .+.. ++.....+....    ...+.....+.+...+..+|...+..|+|..|+
T Consensus        48 q~~~a~~al~~~~~~~p---~d~~i~~~a~a~~~~G~a~~~l~----~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~  120 (257)
T COG5010          48 QTQGAAAALGAAVLRNP---EDLSIAKLATALYLRGDADSSLA----VLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAV  120 (257)
T ss_pred             hhhHHHHHHHHHHhcCc---chHHHHHHHHHHHhcccccchHH----HHhhhhccCcccHHHHHHHHHHHHHhcchHHHH
Confidence            44556677777888899   44333 2333 222222222221    123334455666677777999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ..++++..+.|+++.+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|...+..+....+.
T Consensus       121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CHHHHHHHHHHHHHhcccccCC
Q psy4130         190 DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +..+..+++.+....|++++|.
T Consensus       201 d~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         201 DSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             chHHHHHHHHHHhhcCChHHHH
Confidence            9999999999999999999995

>KOG1173|consensus

Probab=99.61  E-value=5e-15  Score=130.00  Aligned_cols=210  Identities=17%  Similarity=0.142  Sum_probs=171.3

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |..+...+++.+|..+|.++..++|++... ++..+..|...++.+.+-.   .+..+....+....-...+|.-|...+
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpa-Wl~fghsfa~e~EhdQAma---aY~tAarl~~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPA-WLAFGHSFAGEGEHDQAMA---AYFTAARLMPGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHH-HHHHhHHhhhcchHHHHHH---HHHHHHHhccCCcchHHHHHHHHHHhc
Confidence            444556789999999999999999988433 5566667766665433221   112222333444445778899999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-------PHYAKAYGRMGLAYTQMNDYKAA  176 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A  176 (314)
                      +++-|...|.+|+.+.|.++-.+..+|.+.+..+.|.+|+.+|+.++..-       +.....+.+||-++.+++.+++|
T Consensus       395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999432       22446689999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         177 LEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       177 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +.+|++++.+.|.++.++..+|.++..+|+.+.|+      ..+-.....-+.|.-+..+++.....
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai------d~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI------DHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH------HHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998      77777777777787788888877655

>KOG0553|consensus

Probab=99.61  E-value=6.4e-15  Score=120.58  Aligned_cols=116  Identities=19%  Similarity=0.180  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      +-+-+-|.-+.+.++|.+|+..|.+||.++|+++..|.+++.+|.++|.++.|++.++.++.+||.+..+|..||.++..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            44567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       204 ~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      +|++++|+      ..|..++..-|.|+..+..+..+.....
T Consensus       162 ~gk~~~A~------~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  162 LGKYEEAI------EAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             cCcHHHHH------HHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            99999999      8888899999999999988887755543

>KOG1125|consensus

Probab=99.60  E-value=1.1e-14  Score=128.30  Aligned_cols=186  Identities=13%  Similarity=0.182  Sum_probs=143.3

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhh-----hhh--------hccCC-----------
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEV-----LQW--------YSNIN-----------   78 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~-----~~~--------~~~~~-----------   78 (314)
                      +|+.....++-..||..+++|++++|++.+. -..|+..|.+.+....     ..|        +....           
T Consensus       325 LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea-LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s  403 (579)
T KOG1125|consen  325 LGITQAENENEQNAISALRRCLELDPTNLEA-LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKS  403 (579)
T ss_pred             hhhHhhhccchHHHHHHHHHHHhcCCccHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcC
Confidence            5666667888899999999999999944222 2233333322221100     000        00000           


Q ss_pred             --------------CCCChhhH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHH
Q psy4130          79 --------------FSPTEEVK--IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA  142 (314)
Q Consensus        79 --------------~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  142 (314)
                                    ..+....+  .++++...+|..|.-.++|++|+++|+.||...|.+...|..||..+..-.+.++|
T Consensus       404 ~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EA  483 (579)
T KOG1125|consen  404 FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEA  483 (579)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHH
Confidence                          00011122  56788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhccccc
Q psy4130         143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND----------PLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       143 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~~~  209 (314)
                      +..|.+|+++.|..+.++++||.++..+|.|++|.++|-.||.+.+..          ..+|..|-.++...++.+-
T Consensus       484 IsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  484 ISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            999999999999999999999999999999999999999999997651          2478888888777777763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.59  E-value=7.2e-14  Score=116.33  Aligned_cols=156  Identities=15%  Similarity=0.121  Sum_probs=135.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK--  158 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--  158 (314)
                      .....+..++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..++++++.+|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4456678999999999999999999999999999999876   57899999999999999999999999999998775  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcccccCCC
Q psy4130         159 -AYGRMGLAYTQM--------NDYKAALEAYTKAAELDPNDPLYA-----------------NNMQAAMSNLNNSSSASG  212 (314)
Q Consensus       159 -~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~  212 (314)
                       +++.+|.++...        |++++|+..|++++..+|++..++                 ..++.++...|++.+|+ 
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~-  186 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI-  186 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH-
Confidence             799999999886        889999999999999999986543                 35678889999999998 


Q ss_pred             CCCCcchHHHHHHhccCCh---HHHHHHHHhhcCCC
Q psy4130         213 SGGVFPGLSEMSTKVLSDP---SIQQVFGELFANPG  245 (314)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~p---~~~~~l~~~~~~~~  245 (314)
                           ..+..+....+++|   +.+..++.++...+
T Consensus       187 -----~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg  217 (235)
T TIGR03302       187 -----NRFETVVENYPDTPATEEALARLVEAYLKLG  217 (235)
T ss_pred             -----HHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence                 88888888887765   56777777766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2002|consensus

Probab=99.59  E-value=3.3e-14  Score=131.73  Aligned_cols=209  Identities=14%  Similarity=0.107  Sum_probs=116.7

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh--hhhh--------------------------------h
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE--VLQW--------------------------------Y   74 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~--~~~~--------------------------------~   74 (314)
                      .+++|-.|+.+|++++.++|....++.+.++.+|...+..+  ...|                                .
T Consensus       176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~  255 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG  255 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence            46677777777777777777666666666666555544322  2222                                0


Q ss_pred             ccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130          75 SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN---SNPVYYCNRAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      ......+-..++.+|.++..+++.++..|+|+.+...+..++....   --+..++.+|.+|..+|+|++|..+|.++++
T Consensus       256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k  335 (1018)
T KOG2002|consen  256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK  335 (1018)
T ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            1111122223344455555555555555555555555555554331   1233456666666666666666666666666


Q ss_pred             hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc----ccccCCCCCCCcchHHHHHHh
Q psy4130         152 IDPHY-AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN----NSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       152 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      .+|++ .-+++.+|..+...|+++.|+.+|+++++..|++.+....||.+|...+    ..+.|.      ..+......
T Consensus       336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~------~~l~K~~~~  409 (1018)
T KOG2002|consen  336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS------NVLGKVLEQ  409 (1018)
T ss_pred             cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH------HHHHHHHhc
Confidence            66665 5566666666666666666666666666666666666666666666554    223333      344444555


Q ss_pred             ccCChHHHHHHHHhhcC
Q psy4130         227 VLSDPSIQQVFGELFAN  243 (314)
Q Consensus       227 ~~~~p~~~~~l~~~~~~  243 (314)
                      .+.|.+.|-.++.++..
T Consensus       410 ~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  410 TPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            55555666666655444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.58  E-value=4.4e-14  Score=107.11  Aligned_cols=124  Identities=19%  Similarity=0.226  Sum_probs=115.4

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ..|++++..+|.+....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHH
Q psy4130         190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE  239 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~  239 (314)
                      ++..++.++.++...|++++|.      ..+....+..+.++..+.....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~~  127 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESAL------KALDLAIEICGENPEYSELKER  127 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhccccchHHHHHHH
Confidence            9999999999999999999998      8888888888888775544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0547|consensus

Probab=99.56  E-value=2.3e-13  Score=117.85  Aligned_cols=152  Identities=20%  Similarity=0.270  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ...+.++...|..++-.|++..|...|+.+|.++|.+...|..+|.+|....+.++-..+|.+|..++|.++..|+.+|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            34466677777777777777777777777777777777767777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +++-++++++|+..|++++.++|++.-++..++.+..++++++++.      ..|.+..++.|+-|++...++.++..
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m------~~Fee~kkkFP~~~Evy~~fAeiLtD  474 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM------KTFEEAKKKFPNCPEVYNLFAEILTD  474 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCchHHHHHHHHHhh
Confidence            7777777777777777777777777777777777777777777776      67777777777777777776666554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.56  E-value=1.4e-13  Score=129.39  Aligned_cols=138  Identities=4%  Similarity=-0.056  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..+.+++++..+|.+....|.+++|...++.+++++|++..++.+++.++.+.+++++|+..+++++..+|++..+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      |.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|.      ..+..++...
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~------~~~~~a~~~~  218 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR------DVLQAGLDAI  218 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998      5555554433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=4.6e-13  Score=110.45  Aligned_cols=185  Identities=12%  Similarity=0.050  Sum_probs=145.1

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....++.++|++.|..+++.+|.. -+.++.++.+|...++. .++..++.+..++.-.......+...+|.-|+..|-
T Consensus        44 NfLLs~Q~dKAvdlF~e~l~~d~~t-~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          44 NFLLSNQPDKAVDLFLEMLQEDPET-FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             HHHhhcCcchHHHHHHHHHhcCchh-hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence            3344567799999999999999944 34577788899888864 455556666666666666777888899999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-----AKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      ++.|...|.........-..+.-.+-.+|....+|++|+...++.+++.+..     +..|+.|+..+....+.+.|+..
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            9999888888776544455677788888888888888888888888887764     35677788888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.++++.+|++..+-..+|.++...|+++.|+
T Consensus       203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV  234 (389)
T COG2956         203 LKKALQADKKCVRASIILGRVELAKGDYQKAV  234 (389)
T ss_pred             HHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence            88888888888888888888888888888887

>KOG2002|consensus

Probab=99.54  E-value=2.7e-13  Score=125.85  Aligned_cols=203  Identities=14%  Similarity=0.144  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCchhhHHH---HHHHhchhhhhhhhccCC-------------------------------
Q psy4130          33 IEVAVECLCKAYDIPDNIDPASNVDIES---LFQLYYKDEVLQWYSNIN-------------------------------   78 (314)
Q Consensus        33 ~~~Ai~~~~~al~~~p~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~-------------------------------   78 (314)
                      ++.|..+|.-++...|   ++.-..++.   .|.......+..+++...                               
T Consensus       146 ~~~A~a~F~~Vl~~sp---~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSP---DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhCC---cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence            7999999999999999   776666766   333222333333322211                               


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130          79 FSPTEEVKIEAEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  155 (314)
                      .++...+|..+.++..+|.+.....   .+..+...+.++...+|.+|.+...++.-++..|+|..+......++...-.
T Consensus       223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~  302 (1018)
T KOG2002|consen  223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN  302 (1018)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence            1111223344444444444433322   2444555555555555555556666666666666666666666666655422


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         156 ---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND-PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       156 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                         -+..+|++|.++..+|+|++|..+|.++++.+|++ .-.++.+|.+++..|+++.|.      ..+..+....|+++
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~------~~fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK------FCFEKVLKQLPNNY  376 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH------HHHHHHHHhCcchH
Confidence               23458899999999999999999999999999998 778999999999999999999      99999999999999


Q ss_pred             HHHHHHHHhhcCC
Q psy4130         232 SIQQVFGELFANP  244 (314)
Q Consensus       232 ~~~~~l~~~~~~~  244 (314)
                      +.-..++.++...
T Consensus       377 etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  377 ETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHHHhHHHhh
Confidence            9999999887764

>KOG1129|consensus

Probab=99.52  E-value=2.2e-14  Score=118.38  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=107.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---YAKAY  160 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~  160 (314)
                      .++.+.++...+|..|+-.++.+-|+.+|++.|.+.-.+++.++|+|.|.+..++++-++..|++|+..-..   -.++|
T Consensus       319 ~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW  398 (478)
T KOG1129|consen  319 LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW  398 (478)
T ss_pred             cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence            344444444445555555555555555555555555556788999999999999999999999999987542   35899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      +++|.+....|++.-|..+|+-++..+|++.+++.+|+.+..+.|+.++|       ..+.+.++.++.
T Consensus       399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A-------rsll~~A~s~~P  460 (478)
T KOG1129|consen  399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA-------RSLLNAAKSVMP  460 (478)
T ss_pred             hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH-------HHHHHHhhhhCc
Confidence            99999999999999999999999999999999999999999999999999       455555554443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.52  E-value=9.4e-13  Score=127.24  Aligned_cols=122  Identities=18%  Similarity=0.173  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      +.++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|.++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..|++++|+..++++++++|+++.++..++.++...+..++|.
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence            9999999999999999999999999999999999888888775

>KOG0548|consensus

Probab=99.51  E-value=2.5e-13  Score=118.89  Aligned_cols=111  Identities=32%  Similarity=0.511  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      -....|+..+..|+|+.|+.+|.+++.++|.+...|.|+..+|..+|+|++|+++..++++++|+++++|.++|.++..+
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130         171 NDYKAALEAYTKAAELDPNDPLYANNMQAAM  201 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  201 (314)
                      |+|++|+..|.+.|+.+|+|..++.+|+.++
T Consensus        84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999998

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.50  E-value=7.4e-13  Score=106.63  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=141.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .+|++..+ ..++..+...|+-+.+..+..+++..+|.+......+|...+..|+|..|+..++++..++|+++++|..+
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            45666677 88999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      |.+|.+.|++++|...|.+++++.|+++.+..|++..+.-.|+++.|.      ..+......-..|+.+.+.+.-+...
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~------~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE------TLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH------HHHHHHHhCCCCchHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999996      55555555556688999888888776


Q ss_pred             CCC
Q psy4130         244 PGQ  246 (314)
Q Consensus       244 ~~~  246 (314)
                      .+.
T Consensus       215 ~g~  217 (257)
T COG5010         215 QGD  217 (257)
T ss_pred             cCC
Confidence            543

>PLN02789 farnesyltranstransferase

Probab=99.49  E-value=3.2e-12  Score=110.05  Aligned_cols=154  Identities=10%  Similarity=0.009  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .+....++-.+-.++...+.+++|+..+.++|.++|.+..+|..++.++..++ ++++++..+.++++.+|++..+|..+
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R  112 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR  112 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence            34555566555566778899999999999999999999999999999999998 68999999999999999999999999


Q ss_pred             HHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         164 GLAYTQMNDY--KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       164 g~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      +.++..+++.  ++++..++++++.+|++..+|...+.++..+|++++++      ..+..+++.-+.|..+|...+.++
T Consensus       113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL------~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL------EYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHHCCCchhHHHHHHHHH
Confidence            9999999874  78899999999999999999999999999999999998      888888888899999999988877


Q ss_pred             cCC
Q psy4130         242 ANP  244 (314)
Q Consensus       242 ~~~  244 (314)
                      ...
T Consensus       187 ~~~  189 (320)
T PLN02789        187 TRS  189 (320)
T ss_pred             Hhc
Confidence            654

>KOG0550|consensus

Probab=99.49  E-value=4e-13  Score=114.10  Aligned_cols=155  Identities=25%  Similarity=0.327  Sum_probs=125.0

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .|....-..+.+.|+..|++++.++|+..+...                          ....+.....+...|+-.++.
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~--------------------------~~~~~k~le~~k~~gN~~fk~  262 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKS--------------------------ASMMPKKLEVKKERGNDAFKN  262 (486)
T ss_pred             cccccccccchHHHHHHHhhhhccChhhhhHHh--------------------------HhhhHHHHHHHHhhhhhHhhc
Confidence            344455566777777777777777773322211                          223455667899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSN----PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE  178 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  178 (314)
                      |.|..|.++|..+|.++|++    +.+|.++|.+..++|+..+|+..++.+++++|...+++...|.|+..+++|++|++
T Consensus       263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986    45799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         179 AYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      .|+++++...+ ......+..+...+
T Consensus       343 d~~~a~q~~~s-~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  343 DYEKAMQLEKD-CEIRRTLREAQLAL  367 (486)
T ss_pred             HHHHHHhhccc-cchHHHHHHHHHHH
Confidence            99999998776 44444444444433

>KOG0543|consensus

Probab=99.48  E-value=8.1e-13  Score=112.72  Aligned_cols=127  Identities=24%  Similarity=0.333  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---------------NPVYYCNRAASNNKLKNYKLALRDCQIA  149 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a  149 (314)
                      .-..+......|+.+++.|+|..|...|++++..-..               -..++.|++.|+.++++|.+|+..+.++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            4455677889999999999999999999999875321               1257899999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       150 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      |.++|+|+.++|+.|.++..+|+++.|+..|+++++++|+|..+...+..|..+..++.+..
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke  345 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE  345 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887776653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.48  E-value=9.1e-13  Score=99.37  Aligned_cols=112  Identities=17%  Similarity=0.108  Sum_probs=102.0

Q ss_pred             HHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         115 AIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       115 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      ...+. ++.-+..+.+|..+...|++++|.+.|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34456 67778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         194 ANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ++++|.|+...|+.+.|.      ..|..++...-.+|+
T Consensus       106 ~~~ag~c~L~lG~~~~A~------~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        106 PWAAAECYLACDNVCYAI------KALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHHHHHHHcCCHHHHH------HHHHHHHHHhccChh
Confidence            999999999999999998      777777666645554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.47  E-value=4.6e-12  Score=121.30  Aligned_cols=181  Identities=12%  Similarity=0.094  Sum_probs=142.2

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      +....+|+++.|++.|+++++.+|+++.... .+..++...+..+ +....    .+.....+.....+..+|..+...|
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~----eka~~p~n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVY----ERYQSSMNISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHH----HHhccCCCCCHHHHHHHHHHHHHcC
Confidence            3445689999999999999999995422222 3334444444332 22221    2222223344455666688999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      +|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|+..|+++
T Consensus       117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999996554 55566666678887799999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++.+|++..++..+..++...|-...|.
T Consensus       196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        196 VRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            9999999999999999999998887774

>KOG1129|consensus

Probab=99.46  E-value=2.1e-13  Score=112.69  Aligned_cols=146  Identities=15%  Similarity=0.221  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      ++.+..++.+|.+..+...|+..|.+.++..|.+.......+.++..++++++|++.|+.+++.+|.++++.--+|.-|+
T Consensus       256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf  335 (478)
T KOG1129|consen  256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF  335 (478)
T ss_pred             hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh---HHHHHHHHh
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP---SIQQVFGEL  240 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p---~~~~~l~~~  240 (314)
                      .-++++-|+.+|++.+.+.-.+++.+.++|.|....++++-+.      +.+..+.....++.   ++|..++.+
T Consensus       336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L------~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL------PSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH------HHHHHHHhhccCcchhhhhhhcccee
Confidence            6666666666666666666666666666666666666666665      55555554444322   455555544

>KOG2076|consensus

Probab=99.45  E-value=5.4e-12  Score=116.53  Aligned_cols=140  Identities=18%  Similarity=0.147  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhh
Q psy4130           6 EDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEV   85 (314)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (314)
                      +.+.-.+...++.+-.     ....|++++|++.+.+++..+|.+ ..++..++.+|...++.++......   .+...+
T Consensus       133 ~~l~~~l~~ll~eAN~-----lfarg~~eeA~~i~~EvIkqdp~~-~~ay~tL~~IyEqrGd~eK~l~~~l---lAAHL~  203 (895)
T KOG2076|consen  133 SKLAPELRQLLGEANN-----LFARGDLEEAEEILMEVIKQDPRN-PIAYYTLGEIYEQRGDIEKALNFWL---LAAHLN  203 (895)
T ss_pred             cccCHHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHHcccHHHHHHHHH---HHHhcC
Confidence            3344444555554422     235799999999999999999977 5567789999999986654433211   123456


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP  154 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  154 (314)
                      |.+.+.|..++....++|++.+|+-+|.+|++.+|.+....+.++.+|.++|++..|...|.+++.++|
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            667789999999999999999999999999999999999999999999999999999999999777766

>KOG0624|consensus

Probab=99.45  E-value=1.2e-11  Score=102.96  Aligned_cols=215  Identities=10%  Similarity=0.071  Sum_probs=151.7

Q ss_pred             HHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchh--hHHHHHHH------------hchhhhhhhhccCCC
Q psy4130          14 TFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNV--DIESLFQL------------YYKDEVLQWYSNINF   79 (314)
Q Consensus        14 ~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~--~l~~~~~~------------~~~~~~~~~~~~~~~   79 (314)
                      ||....++. |.....+|.+++|+.-|..+++.+|+...+...  .+..+-..            .++......   ...
T Consensus       104 DF~~ARiQR-g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~---~i~  179 (504)
T KOG0624|consen  104 DFMAARIQR-GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE---MIT  179 (504)
T ss_pred             cHHHHHHHh-chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH---HHH
Confidence            676666655 445566999999999999999999965333211  11111111            011111111   111


Q ss_pred             CCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130          80 SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA  159 (314)
Q Consensus        80 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  159 (314)
                      ..++..|=++..+...+.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++-..
T Consensus       180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C  259 (504)
T KOG0624|consen  180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC  259 (504)
T ss_pred             HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence            22344455677788888888888888888888888888888888888888888888888888888888888888875422


Q ss_pred             H--------------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         160 Y--------------------------------------------------GRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       160 ~--------------------------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      +                                                  ..+..|+..-+++.+|+..+.+++.++|+
T Consensus       260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence            1                                                  12445555577888999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      +..++...+.+|.--..|+.|+      ..+..+.....+|..++.-+.
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI------~dye~A~e~n~sn~~~reGle  382 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAI------HDYEKALELNESNTRAREGLE  382 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHH------HHHHHHHhcCcccHHHHHHHH
Confidence            9999999999999999999998      666666666666655544333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.45  E-value=5.2e-12  Score=93.26  Aligned_cols=107  Identities=12%  Similarity=0.122  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGR  162 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  162 (314)
                      ++.++.+|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578999999999999999999999999999876   5689999999999999999999999999999885   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN  195 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  195 (314)
                      +|.++...|++++|+..+++++...|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1173|consensus

Probab=99.42  E-value=2.2e-12  Score=113.59  Aligned_cols=185  Identities=15%  Similarity=0.111  Sum_probs=160.9

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      ..++.+-.+..+..++.+|=+.+-.-++++.++........-..    ..+..+..|..+..|+..|..|...+++.+|.
T Consensus       257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~l----sh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR  332 (611)
T KOG1173|consen  257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLL----SHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR  332 (611)
T ss_pred             cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHH----HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence            55677888888999999996666666667766555444332222    12336677888999999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ++|.++..++|....+|...|..+...+..++|+.+|..|-++-|........+|.-|..++.++.|.+.|..|+.+.|+
T Consensus       333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~  412 (611)
T KOG1173|consen  333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS  412 (611)
T ss_pred             HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130         190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS  224 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  224 (314)
                      ++-++..+|.+....+.+.+|.      ..+....
T Consensus       413 Dplv~~Elgvvay~~~~y~~A~------~~f~~~l  441 (611)
T KOG1173|consen  413 DPLVLHELGVVAYTYEEYPEAL------KYFQKAL  441 (611)
T ss_pred             cchhhhhhhheeehHhhhHHHH------HHHHHHH
Confidence            9999999999999999999997      6555555

>KOG4234|consensus

Probab=99.41  E-value=7.8e-12  Score=96.60  Aligned_cols=120  Identities=33%  Similarity=0.502  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      ...+..+..-|+-++..|+|++|...|..||..+|..+     .+|.|+|.|+++++.++.|+..+.++|.++|.+..++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            34567788899999999999999999999999999754     4789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      .+.+.+|.++.+|++|+..|.+.++.+|....+...+..+--...
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999998888777766644433

>KOG2076|consensus

Probab=99.41  E-value=1.3e-11  Score=114.15  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      +.....+...|+.++..|++++|...+.++++.+|.++.+|+.||.||..+|+.+++...+-.|-.++|.+...|..++.
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            34467888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL  228 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  228 (314)
                      ...++|.+++|+-+|.+|+..+|.+.......+.++.+.|+...|.      ..+..+.+..+
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am------~~f~~l~~~~p  272 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM------ETFLQLLQLDP  272 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH------HHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999998      77777777776

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.41  E-value=1.5e-11  Score=97.16  Aligned_cols=109  Identities=19%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  158 (314)
                      ....+..+..++.+|..+...|++++|+.+|++++...|+.   ..++.++|.++...|++++|+..+++++...|.+..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            34466778899999999999999999999999999887653   468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q psy4130         159 AYGRMGLAYTQMND--------------YKAALEAYTKAAELDPND  190 (314)
Q Consensus       159 ~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~  190 (314)
                      ++..+|.++...|+              +++|++.+++++..+|++
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999887              678888888999989886

>KOG3060|consensus

Probab=99.40  E-value=3.4e-11  Score=96.43  Aligned_cols=174  Identities=16%  Similarity=0.107  Sum_probs=131.3

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhc-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYY-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      ..++.+.|..|+++.-...|   .+..+..  +.++...+ .+++...+    .....++|.+.-.+...--+...+|+-
T Consensus        64 d~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~~~~~A~e~y----~~lL~ddpt~~v~~KRKlAilka~GK~  136 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATGNYKEAIEYY----ESLLEDDPTDTVIRKRKLAILKAQGKN  136 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhhchhhHHHHH----HHHhccCcchhHHHHHHHHHHHHcCCc
Confidence            46677888888888766667   5544322  11333333 33333333    223445677777777777777788888


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTK  182 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~  182 (314)
                      .+||+.+...++..+.+.++|..++.+|...|+|++|.-|+++.+-+.|.++..+.++|.+++-+|   +++-|.++|.+
T Consensus       137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~  216 (289)
T KOG3060|consen  137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER  216 (289)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999988777   56778999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      +++++|.+..+++.+..|-..+-+...
T Consensus       217 alkl~~~~~ral~GI~lc~~~la~~sk  243 (289)
T KOG3060|consen  217 ALKLNPKNLRALFGIYLCGSALAQISK  243 (289)
T ss_pred             HHHhChHhHHHHHHHHHHHHHHHHHhH
Confidence            999999888888888777665544433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.40  E-value=2.2e-12  Score=85.59  Aligned_cols=66  Identities=35%  Similarity=0.574  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAALEAYTKAAELDP  188 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p  188 (314)
                      +..|..+|.++...|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 45555555555555554

...

>PRK15331 chaperone protein SicA; Provisional

Probab=99.39  E-value=1.8e-11  Score=92.76  Aligned_cols=112  Identities=14%  Similarity=0.016  Sum_probs=103.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ...++.-+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN  195 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  195 (314)
                      .|.|+..+|+.+.|+.+|..++. .|.+..+..
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            99999999999999999999998 566555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.39  E-value=7.8e-12  Score=117.66  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=102.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      ....|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++.
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      .+|.++...|+.++|...|+++++....-
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999986553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.39  E-value=1.1e-11  Score=86.75  Aligned_cols=99  Identities=44%  Similarity=0.626  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      .++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+...+..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q psy4130         171 NDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~  189 (314)
                      |++++|...+.+++..+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=1.6e-12  Score=86.28  Aligned_cols=67  Identities=37%  Similarity=0.520  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDP  154 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  154 (314)
                      ++..|..+|.+++..|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46789999999999999999999999999999999999999999999999 79999999999999998

...

>KOG4648|consensus

Probab=99.38  E-value=3.1e-12  Score=106.49  Aligned_cols=113  Identities=33%  Similarity=0.400  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      .-+...|+.|+++|.|++||.||.+++..+|.++..+.|+|.+|++++.|..|..+|..|+.++.....+|.+.+.+-..
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMS  202 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  202 (314)
                      +|...+|.+.++.++++.|++.+....++.+..
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            999999999999999999998887776666533

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.37  E-value=5.5e-11  Score=93.62  Aligned_cols=106  Identities=20%  Similarity=0.206  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ...+..++.+|.++...|++++|+..|++++.+.|+.   +.+|.++|.++...|++++|+..+++++.++|.....+..
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3457789999999999999999999999999987653   4589999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q psy4130         163 MGLAYT-------QMNDYK-------AALEAYTKAAELDPNDP  191 (314)
Q Consensus       163 lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  191 (314)
                      +|.++.       ..|+++       +|+..|++++..+|.+.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999988       777766       66666777888888654

>KOG0495|consensus

Probab=99.37  E-value=1.5e-11  Score=110.19  Aligned_cols=200  Identities=11%  Similarity=0.003  Sum_probs=166.1

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh---hhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD---EVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ..|++-.|...+..+++.+|   .+..++++.+-......   .+-.. .+..      ......+.|+.-+.....+++
T Consensus       596 ~agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~e~eraR~llakar------~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFENDELERARDLLAKAR------SISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHHHHHHh------ccCCcchhhHHHhHHHHHhhh
Confidence            46888999999999999999   44445555432222211   11111 1111      122345788888999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      .++|+..++++|+..|+...+|..+|.++.++++.+.|...|...++..|..+..|..|+.+-...|..-.|...++++.
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         185 ELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ..+|++...|.....+..+.|+.+.|.      ..+..+++..|++.-+|..--.+...
T Consensus       747 lkNPk~~~lwle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~  799 (913)
T KOG0495|consen  747 LKNPKNALLWLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPR  799 (913)
T ss_pred             hcCCCcchhHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccC
Confidence            999999999999999999999999998      88888899999988888765555333

>KOG2003|consensus

Probab=99.36  E-value=8.1e-12  Score=107.58  Aligned_cols=183  Identities=22%  Similarity=0.156  Sum_probs=147.4

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-HHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES-LFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      .+...|+++.|++.+.-.-+.+..-......++.. .|...++. ..+..+.   ..+...+..++.++.+.|++.+..|
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya---d~aln~dryn~~a~~nkgn~~f~ng  504 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA---DIALNIDRYNAAALTNKGNIAFANG  504 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH---HHHhcccccCHHHhhcCCceeeecC
Confidence            34458899999998866544444221222223333 44444433 2222211   2234556677889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ++++|.+.|+++|.-+.....+++++|..+..+|+.++|+.+|-+.-.+--+++.+++.++.+|..+.+...|++++.++
T Consensus       505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988887889999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..+-|+++.++..|+.+|-+.|+...|.
T Consensus       585 ~slip~dp~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  585 NSLIPNDPAILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             cccCCCCHHHHHHHHHHhhcccchhhhh
Confidence            9999999999999999999999998886

>KOG0550|consensus

Probab=99.36  E-value=2.7e-12  Score=109.14  Aligned_cols=152  Identities=18%  Similarity=0.164  Sum_probs=133.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------------VYYCNRAASNNKLKNYKLALRDCQIA  149 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~a  149 (314)
                      .+.++.+.++++..|.+++...+.+.|+.+|+++|.++|+..            ..|...|.-.++.|+|.+|..+|..+
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            456777889999999999999999999999999999999864            35778899999999999999999999


Q ss_pred             HHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         150 IKIDPHYA----KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       150 l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                      |.++|.+.    ..|.+++.+...+|+..+|+..++.++.++|....++...+.|+..++++++|+      +.+..+.+
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV------~d~~~a~q  349 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV------EDYEKAMQ  349 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHh
Confidence            99999864    679999999999999999999999999999999999999999999999999998      66666665


Q ss_pred             hccCChHHHHHHHHh
Q psy4130         226 KVLSDPSIQQVFGEL  240 (314)
Q Consensus       226 ~~~~~p~~~~~l~~~  240 (314)
                      .-.. +++.+.+..+
T Consensus       350 ~~~s-~e~r~~l~~A  363 (486)
T KOG0550|consen  350 LEKD-CEIRRTLREA  363 (486)
T ss_pred             hccc-cchHHHHHHH
Confidence            5444 6555555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=2.1e-10  Score=100.05  Aligned_cols=126  Identities=16%  Similarity=0.100  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      +....+++..+..++..+++++|+..++..++..|+|+.++...+.++...++..+|.+.+++++.++|+....+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++.+.|++.+|+..++..+..+|+++..|..|+.+|..+|+..++.
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence            9999999999999999999999999999999999999999998885

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.2e-10  Score=96.40  Aligned_cols=183  Identities=13%  Similarity=0.130  Sum_probs=143.3

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchh----hHHHHHHHhc-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNV----DIESLFQLYY-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNT   98 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~----~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   98 (314)
                      |-.+...|..|+||..-+..++ .|+.+.+...    -++.-|...+ .+.++..+.    ...+....-..++..+-.+
T Consensus        76 GnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~----~L~de~efa~~AlqqLl~I  150 (389)
T COG2956          76 GNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN----QLVDEGEFAEGALQQLLNI  150 (389)
T ss_pred             HHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHhcchhhhHHHHHHHHHH
Confidence            3345568999999998887654 5755333221    1222222222 222333222    1223344456788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSN-----PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  173 (314)
                      |....+|++|++.-++..++.+..     +..|+.+|..+....+.+.|+..+.+|++.+|+++.+-..+|.+....|+|
T Consensus       151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y  230 (389)
T COG2956         151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY  230 (389)
T ss_pred             HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence            999999999999999999988765     457888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcccccCC
Q psy4130         174 KAALEAYTKAAELDPND-PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.|++.++.+++.||.. +.+...|..||..+|+.++..
T Consensus       231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999986 678899999999999999885

>KOG0495|consensus

Probab=99.31  E-value=5.6e-11  Score=106.55  Aligned_cols=229  Identities=13%  Similarity=0.057  Sum_probs=172.8

Q ss_pred             chhHHHHHHHHHHHHhc------cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHH--Hhchhhhhhhhc
Q psy4130           4 KPEDIITSVITFLRKEL------LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQ--LYYKDEVLQWYS   75 (314)
Q Consensus         4 ~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~--~~~~~~~~~~~~   75 (314)
                      +|+.++..++.+....-      .+..-+....+.++.|+..|..+++..|   ....+++...+.  ..+..+....  
T Consensus       497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp---~k~slWlra~~~ek~hgt~Esl~A--  571 (913)
T KOG0495|consen  497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP---CKKSLWLRAAMFEKSHGTRESLEA--  571 (913)
T ss_pred             hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHhcCcHHHHHH--
Confidence            56667776664443321      1122234456778999999999999999   766666655332  2233333222  


Q ss_pred             cCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130          76 NINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  155 (314)
                       +++++....|.....|...+..+...|+...|...+.++++.+|++.++|+.--.+.....+++.|...|.++....|.
T Consensus       572 -llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT  650 (913)
T KOG0495|consen  572 -LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT  650 (913)
T ss_pred             -HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence             2334445556667788888999999999999999999999999999988888777888888888888888888876654


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                       ...|+.-+.+...++..++|+..++++++..|..+..|..+|.++...++.+.|.      ..+..-.+..|..+-+|-
T Consensus       651 -eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR------~aY~~G~k~cP~~ipLWl  723 (913)
T KOG0495|consen  651 -ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR------EAYLQGTKKCPNSIPLWL  723 (913)
T ss_pred             -chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH------HHHHhccccCCCCchHHH
Confidence             5677778888888888888888888888888888888888888888888888888      888888888888888888


Q ss_pred             HHHHhhcCCC
Q psy4130         236 VFGELFANPG  245 (314)
Q Consensus       236 ~l~~~~~~~~  245 (314)
                      +++.+....+
T Consensus       724 lLakleEk~~  733 (913)
T KOG0495|consen  724 LLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHhc
Confidence            8888866543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=3.6e-11  Score=105.79  Aligned_cols=111  Identities=21%  Similarity=0.230  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      +...|..++..|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         206 NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       206 ~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      ++++|.      ..+..++...+.++.+...+..+..
T Consensus        85 ~~~eA~------~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         85 EYQTAK------AALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             CHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999      9999999999999998877776633

>KOG3060|consensus

Probab=99.30  E-value=4.7e-10  Score=90.00  Aligned_cols=151  Identities=12%  Similarity=0.119  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .-|...+.....|..+...|.|++|+++|+..+.-+|.+..++-..-.+...+|+.-+|++.+...++..+.+.++|..+
T Consensus        81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL  160 (289)
T KOG3060|consen   81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL  160 (289)
T ss_pred             hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34667788888999999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh-HHHHHHHHh
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP-SIQQVFGEL  240 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~  240 (314)
                      +.+|...|+|++|..+|++.+-+.|.++.....++.++.-+|-.+.-.      ..-.-+.+.+..+| ..+.+++..
T Consensus       161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~------~arkyy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE------LARKYYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHhChHhHHHHHHHH
Confidence            999999999999999999999999999999999999999887654432      22223334444455 445555533

>KOG0624|consensus

Probab=99.30  E-value=1.1e-10  Score=97.46  Aligned_cols=181  Identities=12%  Similarity=0.048  Sum_probs=118.8

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      -.....+.+..|+..|..+++.+|   +++....  +.+|...++......   -+.+.+...|+..-+....|.++.++
T Consensus        46 k~lla~~Q~sDALt~yHaAve~dp---~~Y~aifrRaT~yLAmGksk~al~---Dl~rVlelKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   46 KELLARGQLSDALTHYHAAVEGDP---NNYQAIFRRATVYLAMGKSKAALQ---DLSRVLELKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHhhhcCCccchh---hHHHHHhcCccHHHHHHHhchhhhhc
Confidence            344457889999999999999999   5533333  336666664432221   12334556777788888889999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCH---HHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNP---VYYC------------NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      |++++|+..|++.|..+|.+.   +++.            .....+...|++..|+......+++.|=++..+...+.||
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY  199 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            999999999999988887532   1111            1222233445666666666666666666666666666666


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ...|++..|+..++.+-++..++.+..+.++.++...|+.+.+.
T Consensus       200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence            66666666666666666666666666666666666666666655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.29  E-value=1.3e-10  Score=111.52  Aligned_cols=127  Identities=7%  Similarity=-0.020  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      .|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....+..++...|++++|+.++++++...|........+|
T Consensus        30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA  109 (822)
T PRK14574         30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA  109 (822)
T ss_pred             CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            34445566667777777777777777777777777776544346666666667777777777777733333444444446


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .++...|++++|++.|+++++.+|+++.++..++.++...++.++|.
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl  156 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL  156 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence            67777777777777777777777777777776666667776666665

>KOG1128|consensus

Probab=99.29  E-value=2e-11  Score=110.56  Aligned_cols=124  Identities=12%  Similarity=0.161  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ++.+...+|...+..++|+++.++++..++++|-....|+++|.|..+.+++..|..+|.+++.++|++..+|.+++.+|
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            44567777888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ...++-.+|...+.++++.+-++..+|.|...+....|++++|.
T Consensus       564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            99999999999999999999999999999999999999999997

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.28  E-value=9.6e-11  Score=103.63  Aligned_cols=159  Identities=11%  Similarity=-0.080  Sum_probs=121.6

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhH-HHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDI-ESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ....|++++|++.++++++.+|   .+..... +..+...+. ..................+.....+..+|.++...|+
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~P---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDYP---RDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence            3457899999999999999999   4432111 111111111 1111111111111344566777788899999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      +++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|.++    ..|..+|.++...|++++|+..|
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987543    35678999999999999999999


Q ss_pred             HHHHhhCC
Q psy4130         181 TKAAELDP  188 (314)
Q Consensus       181 ~~al~~~p  188 (314)
                      ++++...|
T Consensus       210 ~~~~~~~~  217 (355)
T cd05804         210 DTHIAPSA  217 (355)
T ss_pred             HHHhcccc
Confidence            99987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.28  E-value=1.3e-11  Score=85.33  Aligned_cols=81  Identities=26%  Similarity=0.340  Sum_probs=73.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      +|+|+.|+..|+++++.+|.  +..+++.+|.||++.|+|++|+..+++ ...+|.+...++.+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  466788899999999999999999999 888999999999999999999999999999


Q ss_pred             HHHH
Q psy4130         180 YTKA  183 (314)
Q Consensus       180 ~~~a  183 (314)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.3e-10  Score=96.09  Aligned_cols=119  Identities=11%  Similarity=0.002  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYT  181 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~  181 (314)
                      .+.-+.-++.-+..+|++..-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.+++...   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3344444444555555555555555555555555555555555555555555555555555444322   2344455555


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      +++.++|.+..+.+.|+..+...|++.+|.      .....+...++.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~------~~Wq~lL~~lp~  259 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAA------AAWQMLLDLLPA  259 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHH------HHHHHHHhcCCC
Confidence            555555555555555555555555555555      555555555544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.26  E-value=3e-11  Score=79.08  Aligned_cols=63  Identities=30%  Similarity=0.425  Sum_probs=35.2

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       128 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      .+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555554

>KOG4162|consensus

Probab=99.26  E-value=5.2e-10  Score=102.15  Aligned_cols=206  Identities=17%  Similarity=0.052  Sum_probs=165.6

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChh-hHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEE-VKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      .....+++..+++|++++|+++ +..++++.-|.....-..+..+.   .+.... ...++..|..++.++-..+++.+|
T Consensus       457 ~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R~l~sAl~~~---~eaL~l~~~~~~~~whLLALvlSa~kr~~~A  532 (799)
T KOG4162|consen  457 DALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQRQLTSALDYA---REALALNRGDSAKAWHLLALVLSAQKRLKEA  532 (799)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHH---HHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence            3446889999999999999774 33446666565555433332211   122333 445678899999999999999999


Q ss_pred             HHHHHHHHHcCCCCH-----------------------------------------------------------------
Q psy4130         109 VIEYSKAIDCDNSNP-----------------------------------------------------------------  123 (314)
Q Consensus       109 ~~~~~~al~~~p~~~-----------------------------------------------------------------  123 (314)
                      +...+.++.-.|+|.                                                                 
T Consensus       533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~  612 (799)
T KOG4162|consen  533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST  612 (799)
T ss_pred             HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence            988888876555410                                                                 


Q ss_pred             --------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130         124 --------------------------------------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus       124 --------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                                                            ..|...+..+...++.++|..++.++-.++|..+..|+..|.
T Consensus       613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~  692 (799)
T KOG4162|consen  613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL  692 (799)
T ss_pred             hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence                                                  245577888888899999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcc--hHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFP--GLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++...|.+++|.+.|..++.++|+++.+...+|.++.+.|+..-|.      .  -+.++++.-+.+|+.|..++.++..
T Consensus       693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~------~~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE------KRSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH------HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877775      4  5678888899999999999999877


Q ss_pred             CC
Q psy4130         244 PG  245 (314)
Q Consensus       244 ~~  245 (314)
                      .|
T Consensus       767 ~G  768 (799)
T KOG4162|consen  767 LG  768 (799)
T ss_pred             cc
Confidence            54

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.26  E-value=3.8e-10  Score=94.45  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q psy4130          89 AEKYKNLGNTA-MQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYG  161 (314)
Q Consensus        89 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  161 (314)
                      ...++..|..+ +..|+|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46677888776 66799999999999999999998   5799999999999999999999999999998874   68999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      .+|.++..+|++++|+..|+++++..|+...+...
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            99999999999999999999999999998765443

>KOG1840|consensus

Probab=99.26  E-value=6.6e-10  Score=100.30  Aligned_cols=165  Identities=18%  Similarity=0.116  Sum_probs=129.7

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      +..+|++++|+..++.++++--   ..                           .....+.-......+|..|...++|.
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~---k~---------------------------~G~~hl~va~~l~~~a~~y~~~~k~~  258 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILE---KT---------------------------SGLKHLVVASMLNILALVYRSLGKYD  258 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHH---Hc---------------------------cCccCHHHHHHHHHHHHHHHHhccHH
Confidence            3457777777777777776511   00                           01123344455667999999999999


Q ss_pred             HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHc
Q psy4130         107 QAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--------PHYAKAYGRMGLAYTQM  170 (314)
Q Consensus       107 ~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~  170 (314)
                      +|+..|++++..        +|..+.++.+||.+|...|++++|..++++|+.+-        |.-...+..++.++...
T Consensus       259 eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~  338 (508)
T KOG1840|consen  259 EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM  338 (508)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh
Confidence            999999999975        45556789999999999999999999999999873        33346788899999999


Q ss_pred             CCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         171 NDYKAALEAYTKAAELDP--------NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      +++++|+.++++++++--        .-+..+.+||.++..+|++.+|.      +.+.++++..
T Consensus       339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~------~~~k~ai~~~  397 (508)
T KOG1840|consen  339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE------ELYKKAIQIL  397 (508)
T ss_pred             cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH------HHHHHHHHHH
Confidence            999999999999988632        23568899999999999999998      7777777665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.25  E-value=1.6e-10  Score=85.18  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANN  196 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  196 (314)
                      +..++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578999999999999999999999999999886   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130         197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV  236 (314)
Q Consensus       197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~  236 (314)
                      ++.++...+++++|.      ..+..+....|.++.....
T Consensus        82 ~~~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        82 LGMSLQELGDKEKAK------ATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHhCChHHHH------HHHHHHHHHCcCChhHHHH
Confidence            999999999999998      8888888888888765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.25  E-value=3.5e-11  Score=78.76  Aligned_cols=65  Identities=22%  Similarity=0.282  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA  157 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  157 (314)
                      +.+|..++..|+|++|+..|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.3e-10  Score=94.69  Aligned_cols=112  Identities=21%  Similarity=0.232  Sum_probs=103.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~  158 (314)
                      ...+|++++.|..+|.+|+..+++..|...|.+++++.|+++..+..+|.++..+.   .-.++...+++++.++|.++.
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            33678899999999999999999999999999999999999999999999987664   467899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      +.+.||..++..|+|.+|+..++..++..|.+..-
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            99999999999999999999999999998876543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.24  E-value=3.5e-10  Score=101.39  Aligned_cols=124  Identities=11%  Similarity=0.081  Sum_probs=108.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..++++..+..++..+...|+.++|...++++++. |.++......+.+  ..++++++++.+++.++.+|+++..+..+
T Consensus       258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            44557778889999999999999999999999994 5566554444443  45999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      |.++...++|++|..+|+++++..|++. .+..++.++.+.|+.++|.
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999865 4668999999999999996

>KOG4162|consensus

Probab=99.23  E-value=1.8e-10  Score=105.05  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      ...|...+..+...+.-++|..++.++-..+|..+..|+..|.++...|++++|.+.|..|+.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            34577888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         169 QMNDYKAALE--AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       169 ~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ..|+..-|..  .+..+++++|.++++|+.+|.++..+|+.+.|.      .-|.-+.+.-..+|-
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa------ecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA------ECFQAALQLEESNPV  789 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH------HHHHHHHhhccCCCc
Confidence            9998888877  999999999999999999999999999999998      777777777777763

>TIGR00540 hemY_coli hemY protein

Probab=99.23  E-value=2.9e-10  Score=102.40  Aligned_cols=124  Identities=9%  Similarity=-0.013  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--HHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY--CNRAASNNKLKNYKLALRDCQIAIKIDPHYA--KAYGR  162 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~  162 (314)
                      .++..+..++..+...|++++|+..++++++..|++....  ..........++...+++.++++++.+|+++  .....
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            4778899999999999999999999999999999987532  2333444456889999999999999999999  88889


Q ss_pred             HHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         163 MGLAYTQMNDYKAALEAYT--KAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +|.+++..|++++|.++|+  .+++.+|+... +..++.++.++|+.++|.
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~  390 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA  390 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999  58888887665 559999999999999996

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.23  E-value=4e-10  Score=101.03  Aligned_cols=48  Identities=8%  Similarity=0.054  Sum_probs=23.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL  143 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  143 (314)
                      +..+...|++++|+..+++.++.+|+++.++..++.+|...|+|++|+
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            444444455555555555555555555544444455555555554444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.22  E-value=1.6e-10  Score=102.23  Aligned_cols=187  Identities=7%  Similarity=-0.124  Sum_probs=128.1

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ....++.+.+...+.++.+..|...+......  +.+....++. .....    ..+.....|.+...+.. +..++..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~----~~~~l~~~P~~~~a~~~-~~~~~~~~   90 (355)
T cd05804          16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALAL----LEQLLDDYPRDLLALKL-HLGAFGLG   90 (355)
T ss_pred             HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence            34456778888888888887774433222211  1122222222 22222    23334455666655554 55555544


Q ss_pred             CHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         104 KPEQAVIEYSKAI----DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       104 ~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      ++..+.....+++    ..+|....++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..
T Consensus        91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~  170 (355)
T cd05804          91 DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF  170 (355)
T ss_pred             ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444444444    456666777788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCH----HHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130         180 YTKAAELDPNDP----LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS  224 (314)
Q Consensus       180 ~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  224 (314)
                      +++++...|.++    ..+..++.++...|++++|.      ..+....
T Consensus       171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~------~~~~~~~  213 (355)
T cd05804         171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL------AIYDTHI  213 (355)
T ss_pred             HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH------HHHHHHh
Confidence            999999887543    34668999999999999997      5555543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127|consensus

Probab=99.20  E-value=6.7e-11  Score=110.37  Aligned_cols=179  Identities=13%  Similarity=0.053  Sum_probs=134.2

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      .|..+....+...|..||.+|+++||+..+... .....|......+.+.. .....+.  .........|..+|..|..
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaa-a~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLe  574 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAA-ASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLE  574 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHH-HHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccC
Confidence            344445555788999999999999995543322 33334443332221111 1111111  1111223456679999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .+++.+|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+..+.+..+.....+|+|.+|+..+.
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~  654 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG  654 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      ..+............++.++.+.
T Consensus       655 ~ii~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  655 LIIYAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHH
Confidence            98887766666666666666554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=8.3e-10  Score=96.35  Aligned_cols=124  Identities=24%  Similarity=0.229  Sum_probs=118.3

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       119 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      +|....++|..+..++..|++++|+..+...+...|+|+..+...+.++...++.++|.+.+++++.++|+.+..+.+++
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            37888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCCCCC
Q psy4130         199 AAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQA  248 (314)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~  248 (314)
                      .++.+.|+..+|+      ..+.......++||..|.+++..+...+...
T Consensus       382 ~all~~g~~~eai------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         382 QALLKGGKPQEAI------RILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHhcCChHHHH------HHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            9999999999999      9999999999999999999999998876443

>KOG1174|consensus

Probab=99.20  E-value=1.7e-09  Score=92.49  Aligned_cols=210  Identities=14%  Similarity=0.076  Sum_probs=128.7

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhh---HHH-------------HHHHhchhhhhhhh--------------
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVD---IES-------------LFQLYYKDEVLQWY--------------   74 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~---l~~-------------~~~~~~~~~~~~~~--------------   74 (314)
                      -.+...|++++|+-.|+++.-++|...+....+   +++             +|... +.....|.              
T Consensus       240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~r  318 (564)
T KOG1174|consen  240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFER  318 (564)
T ss_pred             hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHH
Confidence            345568999999999999999999554443321   111             11110 01111110              


Q ss_pred             -ccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130          75 -SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID  153 (314)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  153 (314)
                       .....+.+..++.+..++...|..+...++.++|+-.|+.+..+.|...++|-.+-.+|...|.+.+|.-..+.+++.-
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence             0011122334555566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         154 PHYAKAYGRMG-LAYTQ-MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       154 p~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                      |.++.++..+| .++.. ----++|.+.+++++.++|....+-..++.++..-|++.+++      .-++. .-....|-
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i------~LLe~-~L~~~~D~  471 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII------KLLEK-HLIIFPDV  471 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH------HHHHH-HHhhcccc
Confidence            66666666665 33332 223467888888888888888888888888888888888885      33333 33334455


Q ss_pred             HHHHHHHHhhc
Q psy4130         232 SIQQVFGELFA  242 (314)
Q Consensus       232 ~~~~~l~~~~~  242 (314)
                      .+...+++++.
T Consensus       472 ~LH~~Lgd~~~  482 (564)
T KOG1174|consen  472 NLHNHLGDIMR  482 (564)
T ss_pred             HHHHHHHHHHH
Confidence            56666666543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.20  E-value=1e-09  Score=104.63  Aligned_cols=187  Identities=11%  Similarity=0.014  Sum_probs=140.5

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCC---------------CChhhHHHHHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFS---------------PTEEVKIEAEKY   92 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~   92 (314)
                      ...+++++|+...+.+++.+|+. -..++..+.++............ .....               .....+.+-.++
T Consensus        42 ~~~~~~deai~i~~~~l~~~P~~-i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         42 KSENLTDEAKDICEEHLKEHKKS-ISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCcc-eehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence            35789999999999999999955 23344555555544432211110 00000               011233444789


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------------------  152 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------  152 (314)
                      +.+|.||-+.|++++|...|+++++.+|+++.+..++|..|... +.++|++++.+|+..                    
T Consensus       120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999 999999999998876                    


Q ss_pred             CCCcHHHH--------HHHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCC
Q psy4130         153 DPHYAKAY--------GRMG------------LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASG  212 (314)
Q Consensus       153 ~p~~~~~~--------~~lg------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  212 (314)
                      +|++.+.+        ..++            .+|...++|++++..++.+++++|+|..+...++.||.  +.|..-  
T Consensus       199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~--  274 (906)
T PRK14720        199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDH--  274 (906)
T ss_pred             CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCc--
Confidence            34443331        1224            77888999999999999999999999999999999998  666664  


Q ss_pred             CCCCcchHHHHHHh
Q psy4130         213 SGGVFPGLSEMSTK  226 (314)
Q Consensus       213 ~~~~~~~~~~~~~~  226 (314)
                           +.+.++.+.
T Consensus       275 -----~~~ee~l~~  283 (906)
T PRK14720        275 -----SLLEDYLKM  283 (906)
T ss_pred             -----chHHHHHHH
Confidence                 555555553

>TIGR00540 hemY_coli hemY protein

Probab=99.16  E-value=2.9e-09  Score=95.90  Aligned_cols=118  Identities=10%  Similarity=-0.041  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHH
Q psy4130         121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY--GRMGLAYTQMNDYKAALEAYTKAAELDPNDP--LYANN  196 (314)
Q Consensus       121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~  196 (314)
                      +++.++..++..+...|++++|++.++++++..|++....  ..........++.+.+++.++++++.+|+++  .+...
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            3667778888888888999999999999999888877532  2233333445778888889999999999988  88888


Q ss_pred             HHHHHHHhcccccCCCCCCCcchHHH-HHHhccCChHHHHHHHHhhcCC
Q psy4130         197 MQAAMSNLNNSSSASGSGGVFPGLSE-MSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       197 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +|.++.+.|++++|.      ..+.. ..-....+++....++.++...
T Consensus       341 Lg~l~~~~~~~~~A~------~~le~a~a~~~~p~~~~~~~La~ll~~~  383 (409)
T TIGR00540       341 LGQLLMKHGEFIEAA------DAFKNVAACKEQLDANDLAMAADAFDQA  383 (409)
T ss_pred             HHHHHHHcccHHHHH------HHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence            999999999999886      44442 2222234444455666665554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.16  E-value=1.6e-09  Score=99.26  Aligned_cols=145  Identities=9%  Similarity=-0.008  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CC
Q psy4130          88 EAEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--------NYKLALRDCQIAIKI--DP  154 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p  154 (314)
                      .+..++..|..+...++   +..|+.+|+++++++|+++.+|..++.+|....        +...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45567778888876654   889999999999999999999999999886642        345667777777664  77


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      .++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|+.++|.      +.+..+.+.-|.+|. +
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~------~~~~~A~~L~P~~pt-~  489 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA------DAYSTAFNLRPGENT-L  489 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCCch-H
Confidence            8889999999999999999999999999999999 5789999999999999999999      888888888888886 5


Q ss_pred             HHHHHh
Q psy4130         235 QVFGEL  240 (314)
Q Consensus       235 ~~l~~~  240 (314)
                      .+..++
T Consensus       490 ~~~~~~  495 (517)
T PRK10153        490 YWIENL  495 (517)
T ss_pred             HHHHhc
Confidence            555554

>KOG1840|consensus

Probab=99.16  E-value=1.2e-09  Score=98.74  Aligned_cols=189  Identities=19%  Similarity=0.126  Sum_probs=140.5

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCC-------chhhHHHHHHHhchhh-hhhhh---ccCCC-CCChhhHHHHH
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPA-------SNVDIESLFQLYYKDE-VLQWY---SNINF-SPTEEVKIEAE   90 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-------~~~~l~~~~~~~~~~~-~~~~~---~~~~~-~~~~~~~~~~~   90 (314)
                      .+..+..++++++|+..|++++++--.....       ...+++..|...++.+ +....   ..+.. ......+.-+.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            4445667889999999999988654322111       2233344554444322 21111   01111 12345667788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCD--------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--------P  154 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p  154 (314)
                      .+.+++.++..++++++|+.+|++++++.        +.-+..+.++|.+|..+|+|.+|...+++|+++.        +
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            89999999999999999999999999862        2335689999999999999999999999999885        3


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL-------DPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .....+..+|..+.+.+++.+|.+.|.+++.+       .|+-...+.+|+.+|..+|++++|.
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~  470 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE  470 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence            34578899999999999999999999988776       2344568999999999999999995

>KOG1174|consensus

Probab=99.15  E-value=1.2e-09  Score=93.34  Aligned_cols=149  Identities=15%  Similarity=0.074  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------------------------HHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------------------------VYYCNR  129 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~l  129 (314)
                      .-+.+...+..+|.+++..|++.+|+..|+++..++|...                                  .-|+.-
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            4456778888899999999999999999999988888743                                  234455


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         130 AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       130 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      +...+..+++..|+.+-+++|..+|++..++...|.++...|+.++|+-.|+.|..+.|..-+.|..|-.+|...|++.+
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            66677778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         210 ASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       210 A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      |.      -...+..+.++++.....+++
T Consensus       387 A~------~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  387 AN------ALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HH------HHHHHHHHHhhcchhhhhhhc
Confidence            97      555667777777766666664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.14  E-value=1.3e-09  Score=100.00  Aligned_cols=133  Identities=16%  Similarity=0.108  Sum_probs=97.8

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..++++.|+.+|+++++++|++... +..++..+.....     +     .   .                ....+...+
T Consensus       354 ~~~~~~~A~~lle~Ai~ldP~~a~a-~A~la~~~~~~~~-----~-----~---~----------------~~~~~l~~a  403 (517)
T PRK10153        354 DAKSLNKASDLLEEILKSEPDFTYA-QAEKALADIVRHS-----Q-----Q---P----------------LDEKQLAAL  403 (517)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHh-----c-----C---C----------------ccHHHHHHH
Confidence            4667889999999999999944111 1111111111000     0     0   0                001234555


Q ss_pred             HHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         109 VIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       109 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      ....++++.+  +|..+.+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.+
T Consensus       404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            6666676664  777888899999999999999999999999999999 5889999999999999999999999999999


Q ss_pred             CCCCHH
Q psy4130         187 DPNDPL  192 (314)
Q Consensus       187 ~p~~~~  192 (314)
                      +|.++.
T Consensus       483 ~P~~pt  488 (517)
T PRK10153        483 RPGENT  488 (517)
T ss_pred             CCCCch
Confidence            999875

>KOG1156|consensus

Probab=99.14  E-value=1.5e-09  Score=97.41  Aligned_cols=125  Identities=21%  Similarity=0.148  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      .+.+.+...|..+...|+-++|....+.+++.++.+..+|..+|.++...++|++|+++|+.|+.++|+|...|.-++.+
T Consensus        39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL  118 (700)
T KOG1156|consen   39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL  118 (700)
T ss_pred             ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            44556778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..++++++.....-.+.+++.|.....|..++..+...|++..|.
T Consensus       119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen  119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999997

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.13  E-value=5.3e-09  Score=86.92  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY---CNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYG  161 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  161 (314)
                      .+..++..|..++..|+|++|+..|++++...|..+.+.   +.+|.+|.+.+++++|+..+++.++.+|+++   .+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            456688999999999999999999999999999887554   8999999999999999999999999999875   7889


Q ss_pred             HHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCHH---HH--------------HHHHHHHHHhcc
Q psy4130         162 RMGLAYTQMN---------------D---YKAALEAYTKAAELDPNDPL---YA--------------NNMQAAMSNLNN  206 (314)
Q Consensus       162 ~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~---~~--------------~~l~~~~~~~~~  206 (314)
                      .+|.++...+               +   ..+|+..|++.++..|+..-   +.              ...+..|.+.|+
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9998875554               1   25788999999999998632   22              345666778888


Q ss_pred             cccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130         207 SSSASGSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       207 ~~~A~~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                      +..|+      ..+..++...|..|....
T Consensus       191 y~AA~------~r~~~v~~~Yp~t~~~~e  213 (243)
T PRK10866        191 YVAVV------NRVEQMLRDYPDTQATRD  213 (243)
T ss_pred             hHHHH------HHHHHHHHHCCCCchHHH
Confidence            88887      788888888887665433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.13  E-value=2.3e-09  Score=82.16  Aligned_cols=95  Identities=26%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ..+.+.+|.+++..|++++|+..|++++...|+.   +.+.+.+|.++...|++++|+..++. +.-.+..+.++..+|.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            4578889999999999999999999999977654   35778899999999999999999966 3444556778889999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q psy4130         166 AYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al  184 (314)
                      ++...|++++|+..|++++
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.12  E-value=6.5e-10  Score=77.59  Aligned_cols=87  Identities=33%  Similarity=0.432  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      +++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC
Q psy4130         205 NNSSSAS  211 (314)
Q Consensus       205 ~~~~~A~  211 (314)
                      |++++|.
T Consensus        82 ~~~~~a~   88 (100)
T cd00189          82 GKYEEAL   88 (100)
T ss_pred             HhHHHHH
Confidence            9999886

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.08  E-value=7.3e-09  Score=91.18  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      ..++.++...++-.+|+..+.+++...|.+...+...+..+...++++.|+...++++.+.|.+...|+.|+.+|..+|+
T Consensus       204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence            33455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHH
Q psy4130         173 YKAALEAYT  181 (314)
Q Consensus       173 ~~~A~~~~~  181 (314)
                      +++|+..++
T Consensus       284 ~e~ALlaLN  292 (395)
T PF09295_consen  284 FENALLALN  292 (395)
T ss_pred             HHHHHHHHh
Confidence            555555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.08  E-value=1.5e-08  Score=84.31  Aligned_cols=147  Identities=15%  Similarity=0.077  Sum_probs=121.4

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      .|++++|++.|++++...|   ..+.                                ...+.+.+|.++++.+++++|+
T Consensus        45 ~g~y~~Ai~~f~~l~~~yP---~s~~--------------------------------a~~a~l~la~ayy~~~~y~~A~   89 (243)
T PRK10866         45 DGNWKQAITQLEALDNRYP---FGPY--------------------------------SQQVQLDLIYAYYKNADLPLAQ   89 (243)
T ss_pred             CCCHHHHHHHHHHHHHhCC---CChH--------------------------------HHHHHHHHHHHHHhcCCHHHHH
Confidence            5788888888888888888   3322                                2346889999999999999999


Q ss_pred             HHHHHHHHcCCCCH---HHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHHhCCCcHHH---------
Q psy4130         110 IEYSKAIDCDNSNP---VYYCNRAASNNKLK---------------N---YKLALRDCQIAIKIDPHYAKA---------  159 (314)
Q Consensus       110 ~~~~~al~~~p~~~---~~~~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~---------  159 (314)
                      ..|++.++.+|+++   .+++.+|.++...+               +   ..+|+..|++.++..|++..+         
T Consensus        90 ~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~  169 (243)
T PRK10866         90 AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF  169 (243)
T ss_pred             HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence            99999999998874   57889998875543               1   357889999999999987521         


Q ss_pred             --------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccccCC
Q psy4130         160 --------YGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       160 --------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~  211 (314)
                              -+..|..|.+.|.|..|+.-++.+++..|+.   .+++..+...+..+|..++|.
T Consensus       170 l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~  232 (243)
T PRK10866        170 LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD  232 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence                    2356888999999999999999999999875   578899999999999999884

>PRK11906 transcriptional regulator; Provisional

Probab=99.08  E-value=1.1e-08  Score=89.94  Aligned_cols=109  Identities=12%  Similarity=-0.046  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      .+..+|.+.-+++++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+|+..|.+....|+.++|+..+++
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHH-HHHhcccccCC
Q psy4130         183 AAELDPNDPLYANNMQAA-MSNLNNSSSAS  211 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~-~~~~~~~~~A~  211 (314)
                      +++++|....+-...-.+ ..--...++|+
T Consensus       398 alrLsP~~~~~~~~~~~~~~~~~~~~~~~~  427 (458)
T PRK11906        398 SLQLEPRRRKAVVIKECVDMYVPNPLKNNI  427 (458)
T ss_pred             HhccCchhhHHHHHHHHHHHHcCCchhhhH
Confidence            999999765433222222 23334445554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.08  E-value=7.3e-09  Score=84.00  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYG  161 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  161 (314)
                      .+..++..|..++..|+|.+|+..|++.+...|..   +.+.+.+|.++...|++.+|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46789999999999999999999999999998875   46889999999999999999999999999999865   6899


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhcccccCCCC
Q psy4130         162 RMGLAYTQMN-----------DYKAALEAYTKAAELDPNDPL-----------------YANNMQAAMSNLNNSSSASGS  213 (314)
Q Consensus       162 ~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~  213 (314)
                      .+|.+++...           ...+|+..|+..+...|++.-                 --..++..|.+.|.+..|+  
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~--  161 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI--  161 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH--
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH--
Confidence            9999877653           345899999999999998642                 1245577788888888888  


Q ss_pred             CCCcchHHHHHHhccCChHHHHH
Q psy4130         214 GGVFPGLSEMSTKVLSDPSIQQV  236 (314)
Q Consensus       214 ~~~~~~~~~~~~~~~~~p~~~~~  236 (314)
                          ..+..+++..|..+.....
T Consensus       162 ----~r~~~v~~~yp~t~~~~~a  180 (203)
T PF13525_consen  162 ----IRFQYVIENYPDTPAAEEA  180 (203)
T ss_dssp             ----HHHHHHHHHSTTSHHHHHH
T ss_pred             ----HHHHHHHHHCCCCchHHHH
Confidence                8888888888887755433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.07  E-value=1.7e-09  Score=85.17  Aligned_cols=110  Identities=20%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSN--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAA  176 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A  176 (314)
                      ...|..+...+...++.++..  ..+|+++|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA   91 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA   91 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence            445666666676655555554  6678999999999999999999999999997763   46899999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHH-------HhcccccCC
Q psy4130         177 LEAYTKAAELDPNDPLYANNMQAAMS-------NLNNSSSAS  211 (314)
Q Consensus       177 ~~~~~~al~~~p~~~~~~~~l~~~~~-------~~~~~~~A~  211 (314)
                      +..|++++.++|.....+.+++.++.       .+|++++|.
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence            99999999999999999999999999       555665553

>KOG1156|consensus

Probab=99.07  E-value=6.4e-09  Score=93.50  Aligned_cols=123  Identities=8%  Similarity=0.084  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      ...++..+.-.+..++|.+.+...+..|+.+|.+++.....|..+..+|+-++|....+.+++.++.+...|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34677778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..++|++|+++|+.|+.++|+|..+++.++.+..++++++...
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            9999999999999999999999999999999999999998876

>KOG1127|consensus

Probab=99.07  E-value=9.8e-10  Score=102.81  Aligned_cols=176  Identities=18%  Similarity=0.139  Sum_probs=148.7

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh--hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD--EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ..+...|...|-+++.++|++... ...++.+|....+.  +..++     .++-+.++.++.++...+..|....+++.
T Consensus       471 rK~~~~al~ali~alrld~~~apa-f~~LG~iYrd~~Dm~RA~kCf-----~KAFeLDatdaeaaaa~adtyae~~~we~  544 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPA-FAFLGQIYRDSDDMKRAKKCF-----DKAFELDATDAEAAAASADTYAEESTWEE  544 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHHHHHHH-----HHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence            445788999999999999977443 55677777665532  33333     44456778888999999999999999999


Q ss_pred             HHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         108 AVIEYSKAIDCDNSN--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       108 A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      |....-.+-+..|..  ...|..+|..|...+++..|+..|+.+++.+|++...|..+|.+|...|++.-|++.|.++..
T Consensus       545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            998866666665543  245777999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++|.+.-..+-.+.+....|++.+|.
T Consensus       625 LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  625 LRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             cCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999997

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.06  E-value=3.7e-10  Score=77.93  Aligned_cols=83  Identities=25%  Similarity=0.223  Sum_probs=72.2

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      +++++.|+..|+++++.+|   .+                                + +...++.+|.++++.|+|++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~---~~--------------------------------~-~~~~~~~la~~~~~~~~y~~A~   45 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP---TN--------------------------------P-NSAYLYNLAQCYFQQGKYEEAI   45 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC---GT--------------------------------H-HHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC---CC--------------------------------h-hHHHHHHHHHHHHHCCCHHHHH
Confidence            6889999999999999999   22                                1 3446888999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA  149 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  149 (314)
                      ..+++ +..+|.+...++.+|.|+.++|++++|+..++++
T Consensus        46 ~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   46 ELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            99999 8888888899999999999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.06  E-value=1.1e-08  Score=78.37  Aligned_cols=122  Identities=16%  Similarity=0.084  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGR  162 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  162 (314)
                      +...+.........+++..+...+++.+..+|..   ..+.+.+|.++...|++++|+..|++++...|+.   ..+.++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4445555666667999999999999999999988   5678889999999999999999999999988665   468899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+
T Consensus        91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~  138 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEAR  138 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999976 3344456778999999999999999997

>PRK11906 transcriptional regulator; Provisional

Probab=99.05  E-value=4e-09  Score=92.55  Aligned_cols=133  Identities=13%  Similarity=0.006  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHhcC---CHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q psy4130          91 KYKNLGNTAMQQD---KPEQAVIEYSKAI---DCDNSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus        91 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~  155 (314)
                      .++..|...+..+   ..+.|+..|.+++   .++|..+.+|..++.|+...         .+..+|....++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4577777776555   4678899999999   99999999999999999866         2457899999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      ++.++..+|.++...++++.|...|++|+.++|+.+.+++..|.+....|+.++|.      ..+....+..|.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~------~~i~~alrLsP~  404 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR------ICIDKSLQLEPR  404 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH------HHHHHHhccCch
Confidence            99999999999999999999999999999999999999999999999999999997      555555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.05  E-value=8.8e-10  Score=72.72  Aligned_cols=64  Identities=20%  Similarity=0.129  Sum_probs=32.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      ..|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3455555555555555555555555555555555555555555555555555555544444433

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.04  E-value=1.9e-09  Score=72.23  Aligned_cols=64  Identities=27%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130          97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      .+++..++|++|+.++++++.++|+++..|..+|.++..+|++.+|+.+++++++.+|+++.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.04  E-value=1.8e-09  Score=72.31  Aligned_cols=71  Identities=24%  Similarity=0.299  Sum_probs=65.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130         129 RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA  199 (314)
Q Consensus       129 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  199 (314)
                      |..+|...++|++|+.++++++.++|+++..|+.+|.++..+|++.+|+..|+++++..|+++.+....+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35688999999999999999999999999999999999999999999999999999999999887665543

>KOG1128|consensus

Probab=99.04  E-value=8.7e-10  Score=100.23  Aligned_cols=147  Identities=18%  Similarity=0.127  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      .+.++..|..+|++.....-|++|.+..+..      +..+...+|......++|+++..+++..++++|-....|+.+|
T Consensus       453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G  526 (777)
T KOG1128|consen  453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG  526 (777)
T ss_pred             CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence            4556777888888877766666666665543      3446666777777789999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .+..+++++..|.++|..++.++|++..+|.+++..|.+.++..+|.      ..+.++.+-.-.++.+|..+..+...
T Consensus       527 ~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~------~~l~EAlKcn~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  527 CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF------RKLKEALKCNYQHWQIWENYMLVSVD  599 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH------HHHHHHhhcCCCCCeeeechhhhhhh
Confidence            99999999999999999999999999999999999999999999998      77777777666677787766655333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.04  E-value=4.9e-09  Score=84.99  Aligned_cols=151  Identities=21%  Similarity=0.159  Sum_probs=118.5

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ......|++++|++.|++++...|   .+..                                ...+.+.+|.+++..|+
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P---~s~~--------------------------------a~~A~l~la~a~y~~~~   57 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYP---NSPY--------------------------------APQAQLMLAYAYYKQGD   57 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-T---TSTT--------------------------------HHHHHHHHHHHHHHTT-
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCC---CChH--------------------------------HHHHHHHHHHHHHHcCC
Confidence            344568999999999999999999   4432                                24578899999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCcHHH-----------
Q psy4130         105 PEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLK-----------NYKLALRDCQIAIKIDPHYAKA-----------  159 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~-----------  159 (314)
                      |++|+..|++.++..|.++   .+++.+|.++..+.           ...+|+..|+..+...|++..+           
T Consensus        58 y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~  137 (203)
T PF13525_consen   58 YEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR  137 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence            9999999999999999875   57888999877653           3458999999999999987522           


Q ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccccC
Q psy4130         160 ------YGRMGLAYTQMNDYKAALEAYTKAAELDPNDP---LYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       160 ------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A  210 (314)
                            -+.+|..|.+.|.+..|+..++.+++..|+.+   +++..+..++.++|..+.|
T Consensus       138 ~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  138 NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence                  34568899999999999999999999999864   5788888889999887643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.03  E-value=1.2e-08  Score=74.59  Aligned_cols=96  Identities=22%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---YAKAYGRM  163 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  163 (314)
                      .+++..|.++-..|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            468889999999999999999999999975443   568899999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~  185 (314)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999888775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.03  E-value=1.5e-08  Score=75.39  Aligned_cols=105  Identities=17%  Similarity=0.187  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGR  162 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  162 (314)
                      +..++..|...++.|+|.+|++.|+......|..   ..+...++.+|++.+++++|+..+++-++++|.++   .+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            5678999999999999999999999999988764   46889999999999999999999999999999876   68999


Q ss_pred             HHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHH
Q psy4130         163 MGLAYTQMND---------------YKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       163 lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~  193 (314)
                      .|.+++.+..               ...|...|++.+...|++.-+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999877               888999999999999987644

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.03  E-value=1.1e-09  Score=72.15  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=62.0

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       133 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      ++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999998887776653

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.02  E-value=3.9e-09  Score=100.76  Aligned_cols=127  Identities=9%  Similarity=0.032  Sum_probs=115.9

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----  157 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----  157 (314)
                      ....|.+..++..+...+...+++++|+...+.+++.+|+...+|+.+|.++.+.+++.++...  .++..-+.+.    
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            4567788899999999999999999999999999999999999999999999999988777666  6666655555    


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         158 ---------------KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       158 ---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                                     .+++.+|.||.++|++++|...|+++++++|+|+.+..++|..+... +.++|.
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence                           89999999999999999999999999999999999999999999999 999997

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.02  E-value=3e-09  Score=84.04  Aligned_cols=92  Identities=23%  Similarity=0.339  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      +..+.+++++|.++...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+..|++++..+|++...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4566789999999999999999999999999987764   4789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCC
Q psy4130         197 MQAAMSNLNNSSSAS  211 (314)
Q Consensus       197 l~~~~~~~~~~~~A~  211 (314)
                      ++.++...|+...+.
T Consensus       112 lg~~~~~~g~~~~a~  126 (172)
T PRK02603        112 IAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHHcCChHhHh
Confidence            999999999876654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.01  E-value=1.5e-08  Score=83.00  Aligned_cols=109  Identities=14%  Similarity=0.067  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRM  163 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  163 (314)
                      .-.|..|..++..|+|..|...|...++..|.+   +.+++.||.+++.+|+|++|...|..+++-.|++   +++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            338999999999999999999999999999875   5789999999999999999999999999998775   5889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      |.+...+|+.++|...|+++++..|+...+.....
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            99999999999999999999999999887655443

>KOG4555|consensus

Probab=99.01  E-value=3.1e-08  Score=71.58  Aligned_cols=103  Identities=18%  Similarity=0.196  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRM  163 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l  163 (314)
                      ....+-..|..+...|+.+.|++.|.+++.+.|..+.+|.|++.++.-+|+.++|+.++++++++.....    .++...
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            3456777888999999999999999999999999999999999999999999999999999999975543    678999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      |.+|..+|+-+.|...|+.+.++....
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            999999999999999999988876543

>KOG4642|consensus

Probab=99.01  E-value=1.5e-09  Score=86.32  Aligned_cols=100  Identities=31%  Similarity=0.441  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+.-+...|+.++....|..|+.+|.++|.++|..+.+|.+.+.||++.++|+.+...+.++++++|+.+.+++.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhh
Q psy4130         167 YTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~  186 (314)
                      ......|++|+..+.++..+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHhhccccHHHHHHHHHHHH
Confidence            99999999999999999655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.00  E-value=1.2e-08  Score=85.41  Aligned_cols=107  Identities=13%  Similarity=0.023  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHH
Q psy4130         123 PVYYCNRAASN-NKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN---DPLYAN  195 (314)
Q Consensus       123 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~  195 (314)
                      ...++..|..+ ...|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|++++...|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46788888876 56799999999999999999998   589999999999999999999999999999887   478999


Q ss_pred             HHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130         196 NMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                      .++.++..+|++++|.      ..+..+.+..|+.+....
T Consensus       222 klg~~~~~~g~~~~A~------~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        222 KVGVIMQDKGDTAKAK------AVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHHcCCHHHHH------HHHHHHHHHCcCCHHHHH
Confidence            9999999999999998      888888888888775443

>KOG0543|consensus

Probab=98.97  E-value=1.1e-08  Score=87.71  Aligned_cols=142  Identities=15%  Similarity=0.146  Sum_probs=111.1

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |-.+...|++..|+..|++++..-+.......           +..            ..........+.+++.++.+.+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-----------ee~------------~~~~~~k~~~~lNlA~c~lKl~  271 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-----------EEQ------------KKAEALKLACHLNLAACYLKLK  271 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCH-----------HHH------------HHHHHHHHHHhhHHHHHHHhhh
Confidence            44555688999999999998875552111100           000            0011123457999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA-LEAYTK  182 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~  182 (314)
                      +|.+|+...+++|.++|.|..+++..|.++..+++|+.|+.+|+++++++|.|-.+...+..+..+..++.+. .+.|.+
T Consensus       272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998887776666554 677777


Q ss_pred             HHhhCC
Q psy4130         183 AAELDP  188 (314)
Q Consensus       183 al~~~p  188 (314)
                      .+..-+
T Consensus       352 mF~k~~  357 (397)
T KOG0543|consen  352 MFAKLA  357 (397)
T ss_pred             Hhhccc
Confidence            776544

>KOG0376|consensus

Probab=98.94  E-value=1.6e-09  Score=94.52  Aligned_cols=122  Identities=34%  Similarity=0.476  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      ......++.++..+.|+.|+..|.++|+++|+++.++.+++.++.+.++|..|+.++.+|++++|....+|++.|.+...
T Consensus         5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen    5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence            34566788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--cccccCC
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL--NNSSSAS  211 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~A~  211 (314)
                      ++++.+|...|++...+.|+++.+...+..|....  .+++.|+
T Consensus        85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376|consen   85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999886644  3456665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.94  E-value=2.5e-08  Score=87.83  Aligned_cols=113  Identities=18%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA  175 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  175 (314)
                      -..+...+.++.|+..+++..+.+|+   +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34455578999999999999988865   566789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      |+...++++.+.|++...|+.|+.+|..+|++++|.
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999999999999999996

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376|consensus

Probab=98.94  E-value=6.5e-08  Score=86.34  Aligned_cols=191  Identities=15%  Similarity=0.097  Sum_probs=138.0

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-HHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIES-LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ...+++++|+....+++...|+..++.+..+.. +....+.++- ..    ... ...........+..+.|+++.+..+
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL-k~----ikk-~~~~~~~~~~~fEKAYc~Yrlnk~D   96 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL-KL----IKK-NGALLVINSFFFEKAYCEYRLNKLD   96 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH-HH----HHh-cchhhhcchhhHHHHHHHHHcccHH
Confidence            357899999999999999999554444433322 2222222222 11    000 0011111223379999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------------------CC-
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------------------------------PH-  155 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------p~-  155 (314)
                      +|+.+++   .+++.+..+....|.+++++++|++|+..|+..++.+                              |. 
T Consensus        97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~  173 (652)
T KOG2376|consen   97 EALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED  173 (652)
T ss_pred             HHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence            9999998   5566777788999999999999999999999975543                              22 


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CC--------HHHHHHHHHHHHHhcccccCCCCCCCcchH
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP-------ND--------PLYANNMQAAMSNLNNSSSASGSGGVFPGL  220 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  220 (314)
                      +.+.+|+.+.++...|+|.+|++.+++++.+.-       .+        ..+...++.++..+|+.++|.      .-+
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~------~iy  247 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS------SIY  247 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH------HHH
Confidence            335688999999999999999999999954421       11        236788999999999999997      667


Q ss_pred             HHHHHhccCChHH
Q psy4130         221 SEMSTKVLSDPSI  233 (314)
Q Consensus       221 ~~~~~~~~~~p~~  233 (314)
                      ....+..+.|...
T Consensus       248 ~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  248 VDIIKRNPADEPS  260 (652)
T ss_pred             HHHHHhcCCCchH
Confidence            7888888877644

>KOG0545|consensus

Probab=98.93  E-value=3.4e-08  Score=79.08  Aligned_cols=111  Identities=23%  Similarity=0.244  Sum_probs=98.4

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCC----------HHHHHHHHHHHHHccCHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSN----------PVYYCNRAASNNKLKNYKLAL  143 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~  143 (314)
                      ..........+...|+-+++.|+|.+|...|+.|+..        .|..          ...+.|.+.|+...|+|-+++
T Consensus       171 ddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl  250 (329)
T KOG0545|consen  171 DDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL  250 (329)
T ss_pred             chHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence            3344456778999999999999999999999999853        3443          357889999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130         144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL  192 (314)
Q Consensus       144 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  192 (314)
                      +.+...+..+|.+..+|+..|.++...-+..+|...|.++++++|.-..
T Consensus       251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            9999999999999999999999999999999999999999999997543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.92  E-value=6.6e-09  Score=91.09  Aligned_cols=72  Identities=19%  Similarity=0.203  Sum_probs=66.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALRDCQIAIKID  153 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~  153 (314)
                      ...+|+++..|+++|.+++..|+|++|+..|+++++++|++..+   |+|+|.||..+|++++|+.++++|+++.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            44678899999999999999999999999999999999999854   9999999999999999999999999983

>PRK15331 chaperone protein SicA; Provisional

Probab=98.92  E-value=9.2e-09  Score=78.15  Aligned_cols=112  Identities=11%  Similarity=-0.063  Sum_probs=96.7

Q ss_pred             HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         117 DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       117 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      .+.++.-+..+..|.-++..|++++|...|+-....+|.+++.|+.||.++..+++|++|+..|..+..++++++...+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34455567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130         197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                      .|.|+..+|+.+.|.      ..+..+.. .+.++.+..
T Consensus       111 agqC~l~l~~~~~A~------~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        111 TGQCQLLMRKAAKAR------QCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHHHhCCHHHHH------HHHHHHHh-CcchHHHHH
Confidence            999999999999997      44444433 344444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=4.1e-08  Score=77.27  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      +...+..++..|..|-..|-+.-|...|.+++.+.|..+.++..+|..+...|+|+.|.+.|...++++|.+..++.+.|
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      ..++--|++.-|.+.+.+--..+|++|---.++-....+. +..+|.      ..+.+..+..-.+-.-|.+..-.+.
T Consensus       141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~------tnL~qR~~~~d~e~WG~~iV~~yLg  211 (297)
T COG4785         141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAK------TNLKQRAEKSDKEQWGWNIVEFYLG  211 (297)
T ss_pred             eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHH------HHHHHHHHhccHhhhhHHHHHHHHh
Confidence            9999999999999999999999999875433333333332 333444      3333333333333334555554433

>KOG3785|consensus

Probab=98.89  E-value=1.3e-07  Score=79.81  Aligned_cols=147  Identities=12%  Similarity=0.044  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------hCC--
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK--------------IDP--  154 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------~~p--  154 (314)
                      .-..+|.|+++.|+|++|+..|+-+...+.-+...+.++|.|++.+|.|.+|.+...++-+              ++.  
T Consensus        59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk  138 (557)
T KOG3785|consen   59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK  138 (557)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence            4556789999999999999999999887777888999999999999999999988776432              111  


Q ss_pred             ----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130         155 ----------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS  224 (314)
Q Consensus       155 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  224 (314)
                                +..+-...|+.+++..-.|.+|+..|.+++.-+|+.......++.|+.++.-++-+.      +.+..+.
T Consensus       139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq------evl~vYL  212 (557)
T KOG3785|consen  139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ------EVLKVYL  212 (557)
T ss_pred             HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH------HHHHHHH
Confidence                      112334456777777889999999999999999999999999999999999998887      7777788


Q ss_pred             HhccCChHHHHHHHHhhcC
Q psy4130         225 TKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       225 ~~~~~~p~~~~~l~~~~~~  243 (314)
                      +..+..+-..++..--..+
T Consensus       213 ~q~pdStiA~NLkacn~fR  231 (557)
T KOG3785|consen  213 RQFPDSTIAKNLKACNLFR  231 (557)
T ss_pred             HhCCCcHHHHHHHHHHHhh
Confidence            8888887665555433333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.89  E-value=3e-08  Score=72.51  Aligned_cols=88  Identities=17%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN---DPLYANNM  197 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  197 (314)
                      .+++.+|.++...|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999986554   578999999999999999999999999999898   78888999


Q ss_pred             HHHHHHhcccccCC
Q psy4130         198 QAAMSNLNNSSSAS  211 (314)
Q Consensus       198 ~~~~~~~~~~~~A~  211 (314)
                      +.++...|+.++|+
T Consensus        82 Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   82 ALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHCCCHHHHH
Confidence            99999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.89  E-value=4e-08  Score=75.42  Aligned_cols=96  Identities=26%  Similarity=0.307  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN----------YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND--  172 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--  172 (314)
                      |+.|.+.++.....+|.+++.+++-|.++..+.+          +++|+.-|++|+.++|+...+++.+|.++..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999999999998887743          5778899999999999999999999999988663  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         173 ---------YKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       173 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                               |++|..+|++|...+|++..++..|..+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     7889999999999999998887777655

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.87  E-value=2e-07  Score=71.77  Aligned_cols=134  Identities=12%  Similarity=0.125  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLA  166 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~  166 (314)
                      .-.+.+|+.+...|++.+|..+|++++. +..+++..+..++.+.+..+++..|...+++..+.+|.  .+.....+|.+
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~  169 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART  169 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence            4578899999999999999999999987 57788999999999999999999999999999999986  57888999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD  230 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  230 (314)
                      +...|++.+|...|+.++...|+ +.+...++..+.++|+.++|.      ..+..+...+..+
T Consensus       170 laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~------aq~~~v~d~~~r~  226 (251)
T COG4700         170 LAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN------AQYVAVVDTAKRS  226 (251)
T ss_pred             HHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH------HHHHHHHHHHHhc
Confidence            99999999999999999999886 567888899999999999997      6666666655543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.86  E-value=1.4e-08  Score=89.05  Aligned_cols=69  Identities=19%  Similarity=0.090  Sum_probs=66.8

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA---YGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      .+|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999999865   999999999999999999999999997

>KOG0551|consensus

Probab=98.86  E-value=2.5e-08  Score=83.12  Aligned_cols=104  Identities=31%  Similarity=0.483  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ..+..+..-|+-|++.++|..|+.+|.++|+..-.    ++.+|.|+|.|....|+|..|+.++.+++.++|.+..++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            46788999999999999999999999999997543    35679999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      =+.|++.+.++.+|..+++..+.++-+.
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999999999888776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.85  E-value=3.7e-07  Score=83.52  Aligned_cols=87  Identities=23%  Similarity=0.197  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      +++.+|..|...|++++|+.++++||...|..++.|+..|.++...|++.+|..+++.+-.+|+.+.-+....+..+.+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            45677888888888888888888888888888888888888888888888888888888888888877777777888888


Q ss_pred             cccccCC
Q psy4130         205 NNSSSAS  211 (314)
Q Consensus       205 ~~~~~A~  211 (314)
                      |+.++|.
T Consensus       276 ~~~e~A~  282 (517)
T PF12569_consen  276 GRIEEAE  282 (517)
T ss_pred             CCHHHHH
Confidence            8888885

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1308|consensus

Probab=98.80  E-value=8e-09  Score=86.47  Aligned_cols=123  Identities=24%  Similarity=0.355  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+.-....+.-.+..|.+++|++.|..++.++|..+.+|..++.++++++++..|+.+|..++.++|+....|-..|.+
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A  191 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA  191 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence            33444555667778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      ...+|+|++|...+..+.+++-+ ..+-..+..+.-..+..++-
T Consensus       192 ~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~  234 (377)
T KOG1308|consen  192 ERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEH  234 (377)
T ss_pred             HHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhc
Confidence            99999999999999999998754 33344444554444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.80  E-value=7.5e-08  Score=78.98  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQA  199 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~  199 (314)
                      .|+.|.-+++.|+|..|.+.|..-++..|++.   .++|+||.+++.+|++++|...|..+++-.|++   +++++-+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            78999999999999999999999999999864   899999999999999999999999999998875   689999999


Q ss_pred             HHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         200 AMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      ++.++|+.++|.      ..+.++.+..|..+...
T Consensus       224 ~~~~l~~~d~A~------atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEAC------ATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHH------HHHHHHHHHCCCCHHHH
Confidence            999999999999      88999999999877543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.76  E-value=1.6e-07  Score=80.04  Aligned_cols=141  Identities=18%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      .+.+.......++...++++.|.+.++..-+.+.+..-+....|++....|  .+.+|...|++.....+.++..+..++
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A  208 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA  208 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            345666677889999999999999999988888776655555555666655  599999999998888788899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHH-HHHHhccCChHH
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLS-EMSTKVLSDPSI  233 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~p~~  233 (314)
                      .++..+|+|++|...+.+++..+|++++++.++..+...+|+..++.      ..+. +.....|.+|-+
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~------~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA------ERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH------HHHHHHCHHHTTTSHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH------HHHHHHHHHhCCCChHH
Confidence            99999999999999999999999999999999999999999985543      3333 333344555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.75  E-value=3.3e-08  Score=67.03  Aligned_cols=67  Identities=25%  Similarity=0.297  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---N----SNPVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      |..+..+..+|.++...|+|++|+.+|++++.+.   +    ..+.++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3445556666666666666666666666666431   1    11334555666666666666666666665543

...

>KOG4648|consensus

Probab=98.74  E-value=2.5e-08  Score=83.64  Aligned_cols=109  Identities=18%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      .-..|.-|+++|.|++|+.||.+++..+|.++..+.+.+.+|+++++|..|...+..++.++-....+|...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         206 NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       206 ~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +..+|.      .....++..-+++-++...+..+
T Consensus       180 ~~~EAK------kD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNMEAK------KDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHHHH------HhHHHHHhhCcccHHHHHHHHHh
Confidence            999998      77777777778877776666655

>KOG4234|consensus

Probab=98.72  E-value=1.9e-07  Score=72.67  Aligned_cols=105  Identities=22%  Similarity=0.196  Sum_probs=90.4

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      -|-.....|++++|...|..||..-|   ..+.                              ......|.+.|.++++.
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp---~~~~------------------------------e~rsIly~Nraaa~iKl  147 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCP---STST------------------------------EERSILYSNRAAALIKL  147 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCc---cccH------------------------------HHHHHHHhhhHHHHHHh
Confidence            34455668999999999999999998   2211                              23355788899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      +.++.|+....++|+++|.+..++..+|.+|.++..|++|+.+|.+.+..+|..-.+.
T Consensus       148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear  205 (271)
T KOG4234|consen  148 RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR  205 (271)
T ss_pred             hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence            9999999999999999999999999999999999999999999999999999866543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.72  E-value=2e-08  Score=68.15  Aligned_cols=67  Identities=30%  Similarity=0.435  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID----P---HYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      |+-..++.++|.+|..+|+|++|+.+|++++.+.    +   ..+..+.++|.++...|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3446789999999999999999999999999762    1   23578999999999999999999999999976

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.64  E-value=1.2e-06  Score=80.27  Aligned_cols=123  Identities=14%  Similarity=0.004  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      .++++.++..|-..|++++|+.+++++|...|+.++.|...|.++.+.|++.+|..+++.|-.+|+.+-..-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC--CCC-------HHHHHHHHHHHHHhcccccCC
Q psy4130         169 QMNDYKAALEAYTKAAELD--PND-------PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.|+.++|.+.+......+  |..       .+.....|.++.+.|++..|.
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL  325 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL  325 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999998876655  211       234466788899999999886

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.63  E-value=3.7e-07  Score=77.90  Aligned_cols=142  Identities=13%  Similarity=0.037  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ++......|.++...|++++|++.+.+.     .+.++......+|.++++++.|.+.++..-+.+.+.+-.....+.+.
T Consensus       101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~  175 (290)
T PF04733_consen  101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN  175 (290)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            3455677778888899999999888764     56788888889999999999999999999999888777766666676


Q ss_pred             HHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         168 TQMN--DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       168 ~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      ...|  .+.+|...|++.....|.++..+..++.|+..+|++++|.      ..+.++...-++||+....+..+
T Consensus       176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe------~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE------ELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH------HHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHhccCCHHHHHHHHHH
Confidence            6666  5999999999988888889999999999999999999998      77777777777777765444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.62  E-value=3.2e-06  Score=83.99  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGL  165 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~  165 (314)
                      ...|..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+..|.+..+.  .|+ ...|..+..
T Consensus       579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~  657 (1060)
T PLN03218        579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVD  657 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence            3456666677777777777777777777664 345566777777777777777777777777665  233 456666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcccccCC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDP-NDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .+...|++++|.+.+.++.+... .+...+..+..++.+.|++++|.
T Consensus       658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            77777777777777777666432 24556667777777777777775

>KOG4340|consensus

Probab=98.61  E-value=1.2e-06  Score=72.35  Aligned_cols=136  Identities=21%  Similarity=0.184  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH----------------------
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI----------------------  148 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------------  148 (314)
                      .+..+|.||+...+|..|.++|++.-.+.|.........+..+.+.+.+.+|+.....                      
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse  125 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE  125 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence            4555666666666666666666666666666555555555555555555555443322                      


Q ss_pred             --------HHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcc
Q psy4130         149 --------AIKIDP--HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFP  218 (314)
Q Consensus       149 --------al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  218 (314)
                              .+..-|  +.+....+.|-+.++.|+++.|++-|+.+++...-++-.-++++.++.+.++++.|.      .
T Consensus       126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL------k  199 (459)
T KOG4340|consen  126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL------K  199 (459)
T ss_pred             ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH------H
Confidence                    112223  456778889999999999999999999999999999999999999999999999997      5


Q ss_pred             hHHHHHHhcc-CChH
Q psy4130         219 GLSEMSTKVL-SDPS  232 (314)
Q Consensus       219 ~~~~~~~~~~-~~p~  232 (314)
                      ...+++.+-+ +.|+
T Consensus       200 ~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  200 HISEIIERGIRQHPE  214 (459)
T ss_pred             HHHHHHHhhhhcCCc
Confidence            5555554433 3444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=2.9e-07  Score=72.57  Aligned_cols=113  Identities=24%  Similarity=0.262  Sum_probs=104.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM  201 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  201 (314)
                      .+..++.+|..|-..|-+.-|.-+|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|.+.-+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCCCCCCCcchHHHHHHhccCCh--HHHHHHHHh
Q psy4130         202 SNLNNSSSASGSGGVFPGLSEMSTKVLSDP--SIQQVFGEL  240 (314)
Q Consensus       202 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p--~~~~~l~~~  240 (314)
                      .--|++.-|.      ..+....+.-++||  .+|-.+...
T Consensus       144 YY~gR~~LAq------~d~~~fYQ~D~~DPfR~LWLYl~E~  178 (297)
T COG4785         144 YYGGRYKLAQ------DDLLAFYQDDPNDPFRSLWLYLNEQ  178 (297)
T ss_pred             eecCchHhhH------HHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999998      88899999999999  467666654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.58  E-value=1.7e-06  Score=64.42  Aligned_cols=105  Identities=17%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP---LYAN  195 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  195 (314)
                      .+..++..|...++.|+|.+|++.|+......|..   ..+...|+.+++..+++++|+..+++.++++|.++   -+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45678999999999999999999999999998875   48899999999999999999999999999999875   4788


Q ss_pred             HHHHHHHHhcc---------------cccCCCCCCCcchHHHHHHhccCChH
Q psy4130         196 NMQAAMSNLNN---------------SSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       196 ~l~~~~~~~~~---------------~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ..|.++..+..               ...|.      ..+...++..|+++.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~------~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAF------RDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHH------HHHHHHHHHCcCChh
Confidence            88888888765               33344      566666666666654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.51  E-value=9.3e-06  Score=66.26  Aligned_cols=140  Identities=19%  Similarity=0.131  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYG  161 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  161 (314)
                      .+..|+..|...++.|+|++|+..|+.....+|..   ..+...++.++.+.+++++|+...++-+++.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46789999999999999999999999999988765   46789999999999999999999999999999875   5778


Q ss_pred             HHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCH---H--------------HHHHHHHHHHHhcccccCCCCCCC
Q psy4130         162 RMGLAYTQMN--------DYKAALEAYTKAAELDPNDP---L--------------YANNMQAAMSNLNNSSSASGSGGV  216 (314)
Q Consensus       162 ~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~---~--------------~~~~l~~~~~~~~~~~~A~~~~~~  216 (314)
                      ..|.+++..=        -..+|+..|+..+...|+..   +              --..++..|.+.|.+..|+     
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~-----  187 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI-----  187 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH-----
Confidence            8888876532        24678889999999999853   1              1234566677777777776     


Q ss_pred             cchHHHHHHhccCChHH
Q psy4130         217 FPGLSEMSTKVLSDPSI  233 (314)
Q Consensus       217 ~~~~~~~~~~~~~~p~~  233 (314)
                       ..+..+.+..+.-+.+
T Consensus       188 -nR~~~v~e~y~~t~~~  203 (254)
T COG4105         188 -NRFEEVLENYPDTSAV  203 (254)
T ss_pred             -HHHHHHHhccccccch
Confidence             6666666665554433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.51  E-value=3.9e-05  Score=59.41  Aligned_cols=144  Identities=18%  Similarity=0.192  Sum_probs=120.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCC
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK-IDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      .++....+.=+.+.+.....+.+...|+... .+.+|..+...|++.+|...|++++. +..+++..+..++.+.+..++
T Consensus        61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~  139 (251)
T COG4700          61 TLLMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE  139 (251)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence            3455566666788888888888888887654 78899999999999999999999997 456788899999999999999


Q ss_pred             HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         173 YKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      +..|...+++..+.+|.  .++....++.++...|++.+|.       .-.+.+-..-++|+..-.+..++..++
T Consensus       140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae-------safe~a~~~ypg~~ar~~Y~e~La~qg  207 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE-------SAFEVAISYYPGPQARIYYAEMLAKQG  207 (251)
T ss_pred             HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH-------HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999985  5778889999999999999994       444555566678888888888877754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.50  E-value=1.4e-06  Score=84.13  Aligned_cols=119  Identities=9%  Similarity=-0.001  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      .+..+-..+.+.|.+++|...|+...+..+  .+...|..+..+|.+.|++++|.+.+++.- ..| +...|..+...+.
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~  505 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACR  505 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHH
Confidence            345555555566666666666665554221  122345666666677777777776665431 222 3456777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..|+++.|...+++.+++.|++...|..+..+|.+.|++++|.
T Consensus       506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            8888888888888888888887777888888888888888885

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.49  E-value=1.1e-05  Score=77.89  Aligned_cols=175  Identities=10%  Similarity=-0.069  Sum_probs=112.5

Q ss_pred             chhhcHHHHHHHHHHHcC--CCCCCCCCc-hhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          28 ESKEGIEVAVECLCKAYD--IPDNIDPAS-NVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~--~~p~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ...|++++|++.|++..+  ..|   +.. +..+...+...+..+ +...........   .+.+...+..+...|.+.|
T Consensus       301 ~~~g~~~eA~~lf~~M~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---~~~d~~~~~~Li~~y~k~G  374 (697)
T PLN03081        301 ALHGYSEEALCLYYEMRDSGVSI---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---FPLDIVANTALVDLYSKWG  374 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC---CCCCeeehHHHHHHHHHCC
Confidence            457889999999988754  344   221 112222333333221 111111111100   1123456777888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      ++++|...|++..+   .+...|..+...|.+.|+.++|++.|++..+.... +...+..+-.++...|..++|...|+.
T Consensus       375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~  451 (697)
T PLN03081        375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS  451 (697)
T ss_pred             CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            88888888887643   34567888888888888888888888887765421 355566677778888888888888888


Q ss_pred             HHhhCCC--CHHHHHHHHHHHHHhcccccCC
Q psy4130         183 AAELDPN--DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       183 al~~~p~--~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..+..+-  +...|..+..++.+.|+.++|.
T Consensus       452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        452 MSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            7754322  3346777788888888888885

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.49  E-value=3.7e-07  Score=78.04  Aligned_cols=124  Identities=19%  Similarity=0.208  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC--Cc-
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--SN----PVYYCNRAASNNKL-KNYKLALRDCQIAIKIDP--HY-  156 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~-  156 (314)
                      .-+..+...+.++.+. ++++|+.+|++++.+.-  ..    +.++..+|.+|... |++++|+.+|++|+.+..  +. 
T Consensus        73 ~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            4456677777777665 99999999999998632  22    45788999999998 999999999999998732  11 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcccccCC
Q psy4130         157 ---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND-------PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~  211 (314)
                         ...+..+|.++..+|+|++|++.|++.....-++       ...+...+.|+...|+...|.
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~  216 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAAR  216 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHH
Confidence               3667889999999999999999999988754321       134566777888888887775

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.48  E-value=1.4e-05  Score=65.20  Aligned_cols=149  Identities=14%  Similarity=0.077  Sum_probs=121.8

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ....|++++|++.|+.+....|   .++.                                ...+...++.++++.++++
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p---~s~~--------------------------------~~qa~l~l~yA~Yk~~~y~   88 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHP---FSPY--------------------------------SEQAQLDLAYAYYKNGEYD   88 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCC---CCcc--------------------------------cHHHHHHHHHHHHhcccHH
Confidence            3458899999999999998888   4433                                1357888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHH---HHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCcHHH----------------
Q psy4130         107 QAVIEYSKAIDCDNSNPV---YYCNRAASNNKLK--------NYKLALRDCQIAIKIDPHYAKA----------------  159 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~----------------  159 (314)
                      +|+...++-+++.|.++.   +++..|.+++..=        --.+|+..++..+...|++..+                
T Consensus        89 ~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~  168 (254)
T COG4105          89 LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG  168 (254)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence            999999999999998764   6777888876542        2457889999999999986411                


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccccC
Q psy4130         160 -YGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       160 -~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A  210 (314)
                       =..+|..|.+.|.+..|+.-++.+++..|+.   .+++..+..++..+|-.++|
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a  223 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA  223 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence             2346888999999999999999999987764   46788888999999999999

>KOG4642|consensus

Probab=98.47  E-value=5e-07  Score=72.21  Aligned_cols=108  Identities=18%  Similarity=0.140  Sum_probs=91.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      ..-|..++..+.|..|+.+|.++|.++|..+..|.+.+.++++.++|+.+....+++++++|+.....+.+|.+......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34466777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCcchHHHHHHhccC-----ChHHHHHHHHh
Q psy4130         207 SSSASGSGGVFPGLSEMSTKVLS-----DPSIQQVFGEL  240 (314)
Q Consensus       207 ~~~A~~~~~~~~~~~~~~~~~~~-----~p~~~~~l~~~  240 (314)
                      +++|+      +.+..+....-.     -++++..+..+
T Consensus        94 ~~eaI------~~Lqra~sl~r~~~~~~~~di~~~L~~a  126 (284)
T KOG4642|consen   94 YDEAI------KVLQRAYSLLREQPFTFGDDIPKALRDA  126 (284)
T ss_pred             ccHHH------HHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence            99998      666655433322     23556555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.46  E-value=5.3e-07  Score=53.59  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      +..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            444444444444444444444444444444444444443

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.44  E-value=1.7e-05  Score=78.89  Aligned_cols=121  Identities=12%  Similarity=0.077  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAKAYGRM  163 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  163 (314)
                      ...|..+...+.+.|++++|.+.|++....    .|+ ...|..+..+|.+.|++++|...|++..+.+ +.+...|..+
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL  620 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA  620 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence            446677777777777777777777776542    333 4556667777777777777777777777765 3456677777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAEL--DPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ...|.+.|++++|+..|++..+.  .|+ ...+..+...+.+.|+.++|.
T Consensus       621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~  669 (1060)
T PLN03218        621 VNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAF  669 (1060)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHH
Confidence            77777777777777777777664  343 456677777777777777775

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.43  E-value=1.1e-06  Score=75.06  Aligned_cols=140  Identities=25%  Similarity=0.246  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--S----NPVYYCNRAASNNKLKNYKLALRDCQIAIKID--PH-  155 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-  155 (314)
                      ...-++.+...|+.|...++|++|...|.++....-  .    -...+...+.+|.+. ++++|+.++++|+.+.  .+ 
T Consensus        31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~  109 (282)
T PF14938_consen   31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR  109 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence            334467788999999999999999999999987532  1    134566777777666 9999999999999873  22 


Q ss_pred             ---cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         156 ---YAKAYGRMGLAYTQM-NDYKAALEAYTKAAELDPN--D----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       156 ---~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                         -+..+..+|.+|... |++++|+++|++|+++...  .    ...+..++.++..+|++++|+      ..+.+...
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~------~~~e~~~~  183 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI------EIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHH
Confidence               246889999999998 9999999999999987432  2    357789999999999999998      77777777


Q ss_pred             hccCCh
Q psy4130         226 KVLSDP  231 (314)
Q Consensus       226 ~~~~~p  231 (314)
                      ....++
T Consensus       184 ~~l~~~  189 (282)
T PF14938_consen  184 KCLENN  189 (282)
T ss_dssp             TCCCHC
T ss_pred             Hhhccc
Confidence            665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.43  E-value=6.7e-07  Score=53.14  Aligned_cols=43  Identities=23%  Similarity=0.320  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      .+++.+|.+|..+|++++|+..|+++++.+|+++.+|..++.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            5789999999999999999999999999999999999998753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.42  E-value=2.1e-05  Score=67.54  Aligned_cols=57  Identities=19%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      .|+++..++.||..+++.+.|.+|..+|+.+++..|+ ...+..++.++.++|+..+|
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence            4455555556666666666666666666666655554 23455556666666665555

>KOG1130|consensus

Probab=98.40  E-value=2.7e-07  Score=79.33  Aligned_cols=125  Identities=17%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC-
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKID----PH-  155 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~-  155 (314)
                      ...+++-++|+.|+-.|+|++|+..-+.-|.+...      ...++.|+|.||.-+|+++.|+++|++++.+.    .. 
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~  272 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT  272 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence            34567888888888899999998887776665432      23578889999999999999999888866553    22 


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccCC
Q psy4130         156 -YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       156 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                       .+...|.||..|.-..+++.|+.++.+-+++...      ...+.+.|+..+..+|..++|.
T Consensus       273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence             3466788888898888999999988887766432      3457778888888888888874

>KOG4555|consensus

Probab=98.37  E-value=8.2e-06  Score=59.23  Aligned_cols=85  Identities=22%  Similarity=0.144  Sum_probs=77.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHH
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP----LYANNMQAAMS  202 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~  202 (314)
                      -..|.++...|+.+.|++.|.+++.+.|..+.+|.+.+.++.-+|+.++|+..+++++++.....    .++...+.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            44577888899999999999999999999999999999999999999999999999999976543    46788999999


Q ss_pred             HhcccccCC
Q psy4130         203 NLNNSSSAS  211 (314)
Q Consensus       203 ~~~~~~~A~  211 (314)
                      .+|+-+.|.
T Consensus       127 l~g~dd~AR  135 (175)
T KOG4555|consen  127 LLGNDDAAR  135 (175)
T ss_pred             HhCchHHHH
Confidence            999999997

>KOG0545|consensus

Probab=98.36  E-value=2.4e-05  Score=63.09  Aligned_cols=124  Identities=17%  Similarity=0.104  Sum_probs=96.1

Q ss_pred             CCCchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcC--------CCCCCCCCchhhHHHHHHHhchhhhhh
Q psy4130           1 MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYD--------IPDNIDPASNVDIESLFQLYYKDEVLQ   72 (314)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~--------~~p~~~~~~~~~l~~~~~~~~~~~~~~   72 (314)
                      |++++|-.+.+.+.-=...+       ...|++.+|+.+|..|+.        ..|   .++.                 
T Consensus       169 lsddeKmkav~~l~q~GN~l-------fk~~~ykEA~~~YreAi~~l~~L~lkEkP---~e~e-----------------  221 (329)
T KOG0545|consen  169 LSDDEKMKAVPVLHQEGNRL-------FKLGRYKEASSKYREAIICLRNLQLKEKP---GEPE-----------------  221 (329)
T ss_pred             CCchHhhhhhHHHHHhhhhh-------hhhccHHHHHHHHHHHHHHHHHHHhccCC---CChH-----------------
Confidence            45666666666655444443       346677777777766543        334   3322                 


Q ss_pred             hhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130          73 WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      |        ...+......+.+...|+...++|-+++++....|..+|.+..+|+.+|.++...-+..+|..+|.+++++
T Consensus       222 W--------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  222 W--------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             H--------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            3        34555667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHH
Q psy4130         153 DPHYAKA  159 (314)
Q Consensus       153 ~p~~~~~  159 (314)
                      +|.-..+
T Consensus       294 dpslasv  300 (329)
T KOG0545|consen  294 DPSLASV  300 (329)
T ss_pred             ChhhHHH
Confidence            9975543

>KOG1070|consensus

Probab=98.35  E-value=2.6e-05  Score=76.47  Aligned_cols=200  Identities=12%  Similarity=-0.041  Sum_probs=145.5

Q ss_pred             hhhcHHHHHHHHHHHcC-CCCCCCCC-chhhHHHHH-HHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          29 SKEGIEVAVECLCKAYD-IPDNIDPA-SNVDIESLF-QLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~-~~p~~~~~-~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ..++++.|.+..++||. +++.-.+. ..+|++.+- ...+. .+....   ...++. ..-+-...|..+..+|...+.
T Consensus      1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k---VFeRAc-qycd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK---VFERAC-QYCDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred             hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH---HHHHHH-HhcchHHHHHHHHHHHHHhhc
Confidence            37789999999999985 65633121 333444311 11111 111110   000000 011123467788889999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      +++|.++|+..++........|...|..+++..+-++|...+.+|++.-|.  +.......+.+-++.|+.+.+...|+-
T Consensus      1546 ~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred             chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence            999999999999998888899999999999999999999999999999998  888889999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      .+..+|...+.|..+.....+.|+.+..+      .-|+.+...-..--.+...+.
T Consensus      1626 ll~ayPKRtDlW~VYid~eik~~~~~~vR------~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1626 LLSAYPKRTDLWSVYIDMEIKHGDIKYVR------DLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             HHhhCccchhHHHHHHHHHHccCCHHHHH------HHHHHHHhcCCChhHhHHHHH
Confidence            99999999999999999999988887775      445555444443333333333

>KOG4340|consensus

Probab=98.34  E-value=8.3e-06  Score=67.60  Aligned_cols=136  Identities=10%  Similarity=0.013  Sum_probs=104.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      .+.+..+|.+||+++.--.+.+|.+...+..+|.||....+|..|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34678899999999999999999998899999999999999999999999999999999999889999999999999888


Q ss_pred             HHHHHHHhh------------------------------CC--CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         178 EAYTKAAEL------------------------------DP--NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       178 ~~~~~al~~------------------------------~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                      .........                              -|  +..+...+.|.+..+.|++++|.      ..+..+.+
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv------qkFqaAlq  172 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV------QKFQAALQ  172 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH------HHHHHHHh
Confidence            766543321                              12  23445566666666667776666      66655555


Q ss_pred             hccCChHHHHHHHH
Q psy4130         226 KVLSDPSIQQVFGE  239 (314)
Q Consensus       226 ~~~~~p~~~~~l~~  239 (314)
                      ..--+|-+...+.-
T Consensus       173 vsGyqpllAYniAL  186 (459)
T KOG4340|consen  173 VSGYQPLLAYNLAL  186 (459)
T ss_pred             hcCCCchhHHHHHH
Confidence            55555655444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.34  E-value=5.8e-07  Score=49.96  Aligned_cols=31  Identities=32%  Similarity=0.594  Sum_probs=15.0

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy4130         146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA  176 (314)
Q Consensus       146 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  176 (314)
                      |+++|+++|+++.+|+++|.++...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444444444444444444444444444444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.34  E-value=4.9e-06  Score=64.08  Aligned_cols=58  Identities=16%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCcHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN-----------YKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      -+++|+.-|+++|.++|+...+++++|.+|...+.           |++|..+|++|+..+|++.....
T Consensus        50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k  118 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK  118 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence            47889999999999999999999999999988753           78999999999999999876443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03077 Protein ECB2; Provisional

Probab=98.33  E-value=8.3e-06  Score=80.69  Aligned_cols=173  Identities=11%  Similarity=-0.001  Sum_probs=116.7

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ..|++++|.+.|+..   .|+. .. +..+-..|...+. .++..........  ...|+ ...+..+-..+.+.|.+++
T Consensus       536 k~G~~~~A~~~f~~~---~~d~-~s-~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd-~~T~~~ll~a~~~~g~v~e  607 (857)
T PLN03077        536 RCGRMNYAWNQFNSH---EKDV-VS-WNILLTGYVAHGKGSMAVELFNRMVES--GVNPD-EVTFISLLCACSRSGMVTQ  607 (857)
T ss_pred             HcCCHHHHHHHHHhc---CCCh-hh-HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC-cccHHHHHHHHhhcChHHH
Confidence            367888888888875   3311 11 1122223433333 2222222111111  11122 2345555567888889999


Q ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         108 AVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       108 A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      |..+|+...+..+  .+...|..+..++.+.|++++|.+.+++. ...|+ +..|..|-.++...++.+.+....++.++
T Consensus       608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~  685 (857)
T PLN03077        608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE  685 (857)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            9999988774332  23467888888899999999999888875 24554 56677777777888899999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++|++...+..++.+|...|++++|.
T Consensus       686 l~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        686 LDPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             hCCCCcchHHHHHHHHHHCCChHHHH
Confidence            99999999999999999999999885

>PLN03077 Protein ECB2; Provisional

Probab=98.33  E-value=3.9e-05  Score=75.98  Aligned_cols=115  Identities=9%  Similarity=-0.004  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~  169 (314)
                      +..+-..|.+.|++++|...|+..    +.+...|..+...|.+.|+.++|+..|++..+.  .|+.. .+..+-.++..
T Consensus       527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~  601 (857)
T PLN03077        527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSR  601 (857)
T ss_pred             chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhh
Confidence            344555666666677766666654    345556666666666667777777777666653  23332 33333345666


Q ss_pred             cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCC
Q psy4130         170 MNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .|.+++|..+|+...+..+-  +...+..+..++.+.|+.++|.
T Consensus       602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~  645 (857)
T PLN03077        602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY  645 (857)
T ss_pred             cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence            66667776666666533221  2345666666666666666664

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.30  E-value=7.3e-07  Score=49.56  Aligned_cols=34  Identities=29%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHH
Q psy4130         111 EYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR  144 (314)
Q Consensus       111 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  144 (314)
                      +|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999863

>KOG2053|consensus

Probab=98.28  E-value=2.5e-05  Score=73.45  Aligned_cols=141  Identities=10%  Similarity=0.039  Sum_probs=123.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE  178 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  178 (314)
                      ....++|.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678999999999999999999999999999999999999999988888888888888999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh-HHHHHHHHhhcCCCC
Q psy4130         179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP-SIQQVFGELFANPGQ  246 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~  246 (314)
                      .|++++..+|+ ......+-.++.+.+.+.+=.      ..-.+..+..|++| -+|..++.++....+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ------kaa~~LyK~~pk~~yyfWsV~Slilqs~~~  160 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQ------KAALQLYKNFPKRAYYFWSVISLILQSIFS  160 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence            99999999999 788888888888888886654      45567888888888 469999888766543

>KOG1915|consensus

Probab=98.27  E-value=0.00012  Score=64.49  Aligned_cols=206  Identities=11%  Similarity=-0.000  Sum_probs=140.0

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHH--------HHHhchhhh---hhhhccCCCCCChhhHHHHHHHHHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESL--------FQLYYKDEV---LQWYSNINFSPTEEVKIEAEKYKNLGN   97 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (314)
                      ..|+.+.-.+.|++|+..-|...+. ..+-..+        |.....+..   ...++..+.-.....-..+..|...|.
T Consensus       334 ~~g~~~~Ire~yErAIanvpp~~ek-r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~  412 (677)
T KOG1915|consen  334 SVGDKDRIRETYERAIANVPPASEK-RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQ  412 (677)
T ss_pred             hcCCHHHHHHHHHHHHccCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            3577888889999999888743222 1122222        221111110   011111111112334456778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      ...++.+...|.+.+-.|+..+|.+- +....-.+-.++++++.+...|++-+.-+|.+..+|...|.+-..+|+.+.|.
T Consensus       413 feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR  491 (677)
T KOG1915|consen  413 FEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR  491 (677)
T ss_pred             HHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence            88899999999999999999998764 33444455667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCH--HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         178 EAYTKAAELDPNDP--LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       178 ~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ..|+-|+....-+.  ..|..+.......|+++.|.      ..+...+.....- .+|..++.....
T Consensus       492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR------~LYerlL~rt~h~-kvWisFA~fe~s  552 (677)
T KOG1915|consen  492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR------ALYERLLDRTQHV-KVWISFAKFEAS  552 (677)
T ss_pred             HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH------HHHHHHHHhcccc-hHHHhHHHHhcc
Confidence            99998887654332  35666777777888888885      4444444444333 478888777443

>KOG2796|consensus

Probab=98.27  E-value=2.4e-05  Score=63.77  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCcH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------PHYA  157 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~  157 (314)
                      .+......+.+..++...++|.-....+.+.++.+ |..+.....+|.+-.+.|+.+.|..+++++-+..      ....
T Consensus       173 ~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~  252 (366)
T KOG2796|consen  173 RKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI  252 (366)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence            44556677888999999999999999999999998 6778888999999999999999999999655432      2244


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      ....+.+.++.-.+++.+|...|.+++..||.++.+..+.+.|+.-+|+..+|+      ..+..+....|.
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi------K~~e~~~~~~P~  318 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL------KQLEAMVQQDPR  318 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH------HHHHHHhccCCc
Confidence            667788888999999999999999999999999999999999999999999998      777777766665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.26  E-value=1.8e-05  Score=67.47  Aligned_cols=143  Identities=13%  Similarity=0.012  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK-LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      +|..+.+...+.+..+.|...|.+|++..+....+|...|.+-.. .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566677777777889999999999986666678888888888666 5666779999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHH
Q psy4130         170 MNDYKAALEAYTKAAELDPNDP---LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE  239 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~  239 (314)
                      .++.+.|...|++++..-|...   .+|..........|+.+...      .....+.+..+.++.+......
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~------~v~~R~~~~~~~~~~~~~f~~r  149 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVR------KVEKRAEELFPEDNSLELFSDR  149 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHTTTS-HHHHHHCC
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHhhhhhHHHHHHHH
Confidence            9999999999999999877654   68888888888999887775      4445566666666766655553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=2.8e-06  Score=47.32  Aligned_cols=31  Identities=32%  Similarity=0.453  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  155 (314)
                      +|+++|.+|..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4444555555555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.22  E-value=0.00025  Score=57.38  Aligned_cols=203  Identities=21%  Similarity=0.131  Sum_probs=143.0

Q ss_pred             hhcHHHHHHHHHHHcCCCCCC-CCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNI-DPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~-~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      .+.+..++..+...+...+.. ...........+....... ...........  ...+.....+...+......+++..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  113 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEE  113 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHH
Confidence            467778888888888887732 0011112222222222111 11110000000  2345667788899999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAA-SNNKLKNYKLALRDCQIAIKIDP---HYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ++..+.+++...+.........+. ++...++++.|...+.+++..+|   .....+..++..+...++++.|+..+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            999999999988877665666666 89999999999999999999877   45677777777888999999999999999


Q ss_pred             HhhCCC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         184 AELDPN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       184 l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +...+. ....+..++.++...++++.|.      ..+.......+.....+..+...
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEAL------EYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHH------HHHHHHHhhCcccHHHHhhHHHH
Confidence            999999 6899999999999999888886      55555555555433334444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.19  E-value=0.00016  Score=58.60  Aligned_cols=114  Identities=29%  Similarity=0.351  Sum_probs=99.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDN---SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~  173 (314)
                      ++...++++.|+..|.+++..+|   .....+..++..+...+++..|+..+.+++...+. ....+..++..+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            88999999999999999988777   45666777777788899999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.|+..+.+++...|.....+..++..+...+..+++.
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL  256 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence            99999999999999987777777777777666566664

>KOG1130|consensus

Probab=98.17  E-value=1.7e-05  Score=68.48  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------Cc
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP------HY  156 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~  156 (314)
                      -+++.++|+++.-.|+|+.|+++|+..+.+.      ...+...|.+|..|.-.+++++|+.+..+-+.+..      ..
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4689999999999999999999999887652      12355678999999999999999999999777642      34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHhccccc
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELD-----PN-DPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~~~  209 (314)
                      ..+++.||.++..+|..++|+.+.++.+++.     |. ...+..++......+|..+.
T Consensus       315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            5889999999999999999999888877652     22 34577888888888887765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.16  E-value=0.00015  Score=55.44  Aligned_cols=96  Identities=22%  Similarity=0.193  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN----------------------PVYYCNRAASNNKLKNYKLALRDCQ  147 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~  147 (314)
                      ..+...|......++.+.++..+++++.+....                      ..+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344555666777889999999999999875321                      1234456666777788888888888


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       148 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      +++..+|.+..+|..+-.++...|+..+|+..|++...
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888877776543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=4.6e-06  Score=46.41  Aligned_cols=34  Identities=53%  Similarity=0.861  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2796|consensus

Probab=98.14  E-value=5e-05  Score=61.95  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID----CD--NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA  159 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  159 (314)
                      +..+.....+|.+.++.|+.+.|..+|+..-+    ++  .....+..+.+.+|.-.++|..|...+.+++..||.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            44566778899999999999999999995443    22  2234567788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAM  201 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~  201 (314)
                      ..+.+.|+..+|+..+|++..+.++...|..   ....++|..++
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            9999999999999999999999999999974   33455555544

>KOG2376|consensus

Probab=98.14  E-value=4.2e-05  Score=68.86  Aligned_cols=117  Identities=15%  Similarity=0.029  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      .++.--+.+...++|++|+....+.+...|++..+....-.|+.+.++|++|+...++-......+. ..+..+-|.+++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence            3444445566778888888888888888888888877777788888888888744433332222222 226777788888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +..++|+.+++   -+++.+..+....+.++.++++|++|.
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeal  130 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEAL  130 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHH
Confidence            88888888777   445666667777788888888888886

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.13  E-value=7.8e-06  Score=45.38  Aligned_cols=29  Identities=24%  Similarity=0.416  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDP  154 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p  154 (314)
                      |+.+|.++..+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            33333333333333333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.13  E-value=8.3e-06  Score=45.28  Aligned_cols=34  Identities=47%  Similarity=0.778  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      +.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0376|consensus

Probab=98.12  E-value=2.1e-06  Score=75.51  Aligned_cols=107  Identities=25%  Similarity=0.249  Sum_probs=99.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      -+-+.-.+.-++|+.|+..|.+||+++|+.+..+-+.+.++.+.+++..|+..+.++++++|....+|+..|.+...+++
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            44566677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCcchHHHHHHhccCChHHHHHHHH
Q psy4130         207 SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE  239 (314)
Q Consensus       207 ~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~  239 (314)
                      +.+|.      ..+.......|++|.+...+..
T Consensus        88 ~~~A~------~~l~~~~~l~Pnd~~~~r~~~E  114 (476)
T KOG0376|consen   88 FKKAL------LDLEKVKKLAPNDPDATRKIDE  114 (476)
T ss_pred             HHHHH------HHHHHhhhcCcCcHHHHHHHHH
Confidence            99999      8999999999999988777663

>KOG1070|consensus

Probab=98.10  E-value=0.00058  Score=67.44  Aligned_cols=199  Identities=10%  Similarity=-0.033  Sum_probs=148.1

Q ss_pred             HHHHHHHHcCCCCCCCCCchhhHHHH--HHHhchhhhhhh--hccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy4130          36 AVECLCKAYDIPDNIDPASNVDIESL--FQLYYKDEVLQW--YSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIE  111 (314)
Q Consensus        36 Ai~~~~~al~~~p~~~~~~~~~l~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  111 (314)
                      ..+-|++.+.-+|   .+...|+..+  +....+.+.+..  ...+-.....+..+....|..+-+....-|.-+.-.+.
T Consensus      1443 saeDferlvrssP---NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP---NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CHHHHHHHHhcCC---CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            4566788888889   6655566552  222222221111  00011100112223334455544555555677777888


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q psy4130         112 YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--  189 (314)
Q Consensus       112 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--  189 (314)
                      |++|.+.+. -...|..|..+|.+.+.+++|.+.++..++........|..++..++...+-+.|...+.+|++.-|.  
T Consensus      1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            999988763 34578899999999999999999999999998888999999999999999999999999999999998  


Q ss_pred             CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +.......+.+..+.|+.+.+.      ..+.......|..-++|..+-...-..
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGR------tlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGR------TLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhH------HHHHHHHhhCccchhHHHHHHHHHHcc
Confidence            7788899999999999999998      788888889999999999888775553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.09  E-value=0.00037  Score=59.46  Aligned_cols=127  Identities=19%  Similarity=0.159  Sum_probs=102.2

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh-cCCHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ-QDKPEQA  108 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A  108 (314)
                      .+.++.|...|.+|.+..+   ...                                   ..|...|..-+. .++.+.|
T Consensus        14 ~~g~~~aR~vF~~a~~~~~---~~~-----------------------------------~vy~~~A~~E~~~~~d~~~A   55 (280)
T PF05843_consen   14 TEGIEAARKVFKRARKDKR---CTY-----------------------------------HVYVAYALMEYYCNKDPKRA   55 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCC---S-T-----------------------------------HHHHHHHHHHHHTCS-HHHH
T ss_pred             hCChHHHHHHHHHHHcCCC---CCH-----------------------------------HHHHHHHHHHHHhCCCHHHH
Confidence            5569999999999985444   222                                   356667777555 6777779


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ...|+.+++..|.+..+|......+...++.+.|...|++++..-|...   ..|......-...|+.+...+..+++.+
T Consensus        56 ~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   56 RKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999877655   6788888888899999999999999999


Q ss_pred             hCCCCHHHH
Q psy4130         186 LDPNDPLYA  194 (314)
Q Consensus       186 ~~p~~~~~~  194 (314)
                      ..|++....
T Consensus       136 ~~~~~~~~~  144 (280)
T PF05843_consen  136 LFPEDNSLE  144 (280)
T ss_dssp             HTTTS-HHH
T ss_pred             HhhhhhHHH
Confidence            999865433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.08  E-value=0.00016  Score=72.15  Aligned_cols=122  Identities=8%  Similarity=-0.072  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--------  155 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------  155 (314)
                      ..+..+|.++...|++++|...+++++......      ..++.++|.++...|++++|...+++++.+...        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            345667777778888888888888877653221      234566777788888888888888887775211        


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhcccccCC
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ....+..+|.++...|++++|...+.+++.+...     ...++..++.++...|++++|.
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  632 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR  632 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence            1234556777777788888888888877765321     2344556777777777777775

>KOG1308|consensus

Probab=98.06  E-value=2.1e-06  Score=72.31  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=92.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCC
Q psy4130         133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASG  212 (314)
Q Consensus       133 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  212 (314)
                      .+..|.++.|++.|..+|.++|.....|...+.++.+++++..|+..|..+++++|+...-+...+.+...+|++++|  
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a--  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA--  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH--
Confidence            345788999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         213 SGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                           ......+..+--|+..-..+.....+.+
T Consensus       202 -----a~dl~~a~kld~dE~~~a~lKeV~p~a~  229 (377)
T KOG1308|consen  202 -----AHDLALACKLDYDEANSATLKEVFPNAG  229 (377)
T ss_pred             -----HHHHHHHHhccccHHHHHHHHHhccchh
Confidence                 4555666666677877777777655543

>KOG3081|consensus

Probab=98.04  E-value=0.00035  Score=57.22  Aligned_cols=87  Identities=11%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL-EAYTK  182 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~  182 (314)
                      .+.+|.-+|++.-...|..+......+.|+..+++|++|...++.++..++++++.+.++-.+-..+|...++. ..+.+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            45555555555555444555555555555555555555555555555555555555555555555555544432 23333


Q ss_pred             HHhhCCCC
Q psy4130         183 AAELDPND  190 (314)
Q Consensus       183 al~~~p~~  190 (314)
                      ....+|+.
T Consensus       268 Lk~~~p~h  275 (299)
T KOG3081|consen  268 LKLSHPEH  275 (299)
T ss_pred             HHhcCCcc
Confidence            44444444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.93  E-value=0.0012  Score=57.02  Aligned_cols=125  Identities=17%  Similarity=0.041  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-AKAYGRMGL  165 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~  165 (314)
                      ..+.....-|..-+..|+|.+|.....+.-+..+....++..-+.+-..+|+++.|-.++.++-+..+++ ......++.
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar  161 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR  161 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            3455666778888889999999999999888777777777777888899999999999999999995554 467788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++...|+++.|.....++++..|.++.+......+|...|++.+..
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll  207 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL  207 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999999999999999998875

>KOG3785|consensus

Probab=97.91  E-value=0.0037  Score=53.52  Aligned_cols=85  Identities=18%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      ...+|.++...-.|.+|++.|.+++.-+|.....-..++.||+++.=++-+.+.+.--+...|+.+-+....+..+.++=
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~  233 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI  233 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence            44566666666677778888888877777777777777777887777777777777777777777776666666666654


Q ss_pred             ccccC
Q psy4130         206 NSSSA  210 (314)
Q Consensus       206 ~~~~A  210 (314)
                      +-..|
T Consensus       234 ngr~a  238 (557)
T KOG3785|consen  234 NGRTA  238 (557)
T ss_pred             ccchh
Confidence            44444

>KOG2471|consensus

Probab=97.91  E-value=2.6e-05  Score=68.71  Aligned_cols=118  Identities=12%  Similarity=0.066  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h----
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKA-IDCDNS--------NPVYYCNRAASNNKLKNYKLALRDCQIAIK-I----  152 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~----  152 (314)
                      +.+.++...++.++-.|+|.+|.+.+... +...|.        ...+|.|+|.++++++.|.-+..+|.+|++ .    
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            55778888999999999999999887532 223333        234678999999999999999999999996 1    


Q ss_pred             ----CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         153 ----DP---------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       153 ----~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                          .|         +.....|+.|..+...|++-.|.++|.+++.....+|..|..++.|.+..
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                11         24578999999999999999999999999999999999999999997754

>KOG1941|consensus

Probab=97.86  E-value=9.3e-05  Score=63.09  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----c---
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----Y---  156 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~---  156 (314)
                      .....+|+++...+.|+++++.|+.+++..-.+      ..++..+|..+...+|+++|+.+..+|..+...    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            456679999999999999999999999874332      246889999999999999999999999987432    1   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhcccccCC
Q psy4130         157 ---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDP------NDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                         .-+++.++.++..+|+.-+|.++++++.++.-      -......-++.+|...|+.+.|.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af  266 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF  266 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence               25678899999999999999999999887632      23456677889999999988876

>KOG1586|consensus

Probab=97.86  E-value=0.00071  Score=54.43  Aligned_cols=104  Identities=18%  Similarity=0.150  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----
Q psy4130          89 AEKYKNLGNTAMQQ-DKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----  157 (314)
Q Consensus        89 ~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----  157 (314)
                      +..+..+|.+|... .++++|+.+|+++-+.....      ..++...+..-..+++|.+|+..|++.....-++.    
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            34577888888775 89999999999998865432      12445556666778999999999999998876654    


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130         158 ---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL  192 (314)
Q Consensus       158 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  192 (314)
                         ..++.-|.|++...+.-.+...+++...++|....
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence               34556678888889999999999999999998654

>KOG3081|consensus

Probab=97.83  E-value=0.0016  Score=53.47  Aligned_cols=113  Identities=16%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130          97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL----KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus        97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      .++.+..+++-|...+++....+.+  .....||.++.+.    +.+.+|.-+|+..-...|..+......+.|+..+++
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence            3444444444444444444443322  2233344444432    345666666666666555566666666777777777


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      |++|...++.++..++++++.+.|+..+-..+|.-.++.
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            777777777777777777777777777766776665554

>KOG1915|consensus

Probab=97.81  E-value=0.0013  Score=58.29  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .+.-+...|...|.--..++++..|...|++||..+-.+..+|...+.+-++.+....|...+.+|+.+-|.-...|+..
T Consensus        68 rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY  147 (677)
T KOG1915|consen   68 RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence            34445667888898889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ...-..+|+...|.+.|++-+...|+ ..+|........+.++.+.|.
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR  194 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERAR  194 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHH
Confidence            88888999999999999999999996 457777778888888888885

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0017  Score=54.24  Aligned_cols=143  Identities=13%  Similarity=0.024  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG--LAY  167 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~  167 (314)
                      +.-+..+......+++.+|...|..++...|.+..+...++.||...|+.+.|...+...-....+.. .....+  ..+
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll  213 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELL  213 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHH
Confidence            34555667788999999999999999999999999999999999999999999888766433222211 111111  222


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc--cCChHHHHHHHHh
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--LSDPSIQQVFGEL  240 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~p~~~~~l~~~  240 (314)
                      .......+. ..+.+.+..+|++..+.+.++..+...|+.++|.      ..+....++-  .+|...+..+-.+
T Consensus       214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al------e~Ll~~l~~d~~~~d~~~Rk~lle~  281 (304)
T COG3118         214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAAL------EHLLALLRRDRGFEDGEARKTLLEL  281 (304)
T ss_pred             HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhcccccCcHHHHHHHHH
Confidence            222222221 2355667789999999999999999999999997      6555555543  2355444333333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.81  E-value=0.00095  Score=66.69  Aligned_cols=124  Identities=15%  Similarity=-0.041  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------  156 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------  156 (314)
                      .......+|.++...|++++|...+++++...+...     .++..+|.++...|++++|...+++++......      
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            345556688899999999999999999998654422     356778999999999999999999999764321      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcccccCC
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--------DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..++..+|.++...|++++|...+++++.+...        ....+..++.++...|++++|.
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  593 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE  593 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            246678899999999999999999999886321        1234567788899999999885

>KOG2610|consensus

Probab=97.70  E-value=0.00048  Score=58.28  Aligned_cols=117  Identities=11%  Similarity=0.033  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHc
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHY---AKAYGRMGLAYTQM  170 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~  170 (314)
                      .+.+.+.+|++.+|...+++.|...|.+.-++..--.+++.+|+...-...+++.+-. +|+-   ....-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3445566777777777788888877777766666666677777777777777777765 4443   34444556666677


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      |-|++|.+.-+++++++|.+..+...++-++...+++.++.
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~  229 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK  229 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence            77777777777777777777766677777776666666654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.69  E-value=8.4e-05  Score=41.13  Aligned_cols=29  Identities=28%  Similarity=0.476  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDP  154 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p  154 (314)
                      |+.+|.+|..+|++++|+.+|+++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            34444444444444444444444444443

...

>KOG1310|consensus

Probab=97.67  E-value=0.00022  Score=63.68  Aligned_cols=108  Identities=31%  Similarity=0.370  Sum_probs=96.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL---KNYKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      .-+...+.+...|+-.+....+..|+..|.+++...|....++.+++.++++.   |+.-.|+.++..|++++|...++|
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            34566777788888888888999999999999999999999999999999886   578889999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  191 (314)
                      ++|+.++..++++.+|+.+...+....|.+.
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            9999999999999999999887777788554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.66  E-value=0.0001  Score=40.75  Aligned_cols=33  Identities=45%  Similarity=0.813  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      .+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999953

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.63  E-value=0.00076  Score=61.77  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      +.+.|.+.++......|+.+-..+..|.++...|+.++|+..+++++.....    ..-.++.+|.++..+.+|++|..+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            3344444444444444444444444444444444444444444444422111    112344444444444444444444


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHHhccc
Q psy4130         180 YTKAAELDPND-PLYANNMQAAMSNLNNS  207 (314)
Q Consensus       180 ~~~al~~~p~~-~~~~~~l~~~~~~~~~~  207 (314)
                      |.+..+.+.-. .-+.+..|.|+..+++.
T Consensus       328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  328 FLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            44444433221 22233344444444444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.62  E-value=0.0026  Score=56.84  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=91.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH------------------  155 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------  155 (314)
                      .+-....+..+.+.-++.-++||+++|+.+.+|..+|.=  ......+|...++++++....                  
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            344556778999999999999999999999999887652  223456666667666654210                  


Q ss_pred             -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCC
Q psy4130         156 -------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       156 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                             ...+..++|.|..++|+.++|++.++..++..|.  +..++.+|..++..++.+.++.
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence                   1245678999999999999999999999998875  5678999999999999999984

The molecular function of this protein is uncertain.

>KOG0551|consensus

Probab=97.61  E-value=0.00048  Score=58.16  Aligned_cols=89  Identities=20%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      +.-|-.-|.-|++.++|..|+..|.+.|+..-.    ++..|.+++-+.+.+|+|..|+..+.+++.++|.+..+++.-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            445667799999999999999999999998543    4578999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccCC
Q psy4130         199 AAMSNLNNSSSAS  211 (314)
Q Consensus       199 ~~~~~~~~~~~A~  211 (314)
                      .|+..+.++.+|.
T Consensus       161 kc~~eLe~~~~a~  173 (390)
T KOG0551|consen  161 KCLLELERFAEAV  173 (390)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988886

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.59  E-value=0.0032  Score=49.42  Aligned_cols=101  Identities=17%  Similarity=0.082  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      -....++..+...+++++|+..++.++....+.   +-+-..+|.+...+|.+++|+..+......+- .+..-...|.+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi  168 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence            456778899999999999999999998653332   23557899999999999999998876554221 22345678999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~  191 (314)
                      +...|+-++|+..|.+++..+++..
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCChH
Confidence            9999999999999999999985543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.58  E-value=0.002  Score=49.09  Aligned_cols=108  Identities=15%  Similarity=0.072  Sum_probs=74.4

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..++.+.+++.+++++.+..   .+.-..+.          ...|..   ............++..++..+...|++++|
T Consensus        18 ~~~~~~~~~~~~~~al~ly~---G~~l~~~~----------~~~W~~---~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYR---GDFLPDLD----------DEEWVE---PERERLRELYLDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT-----SSTTGGGT----------TSTTHH---HHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HCCCHHHHHHHHHHHHHHhC---CCCCCCCC----------ccHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            35688899999999998876   33110000          001100   000112233456778888899999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      +..+++++..+|.+..+|..+-.+|...|++.+|+..|+++...
T Consensus        82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.57  E-value=0.0036  Score=55.97  Aligned_cols=109  Identities=19%  Similarity=0.121  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHYAKAYGRMGL  165 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~  165 (314)
                      ..+-..+|.+..+.|+.++|++.++..++.+|.  +..++.++..++..++.|.++...+.+.-.+ -|+++...+..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            445677999999999999999999999998875  4668999999999999999999999986544 2666766666655


Q ss_pred             HHHH-cCC---------------HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy4130         166 AYTQ-MND---------------YKAALEAYTKAAELDPNDPLYANNM  197 (314)
Q Consensus       166 ~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l  197 (314)
                      +..+ .++               -..|++.+.+|++.||.-+..+..+
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~  386 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM  386 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence            4432 222               2347789999999999887765544

The molecular function of this protein is uncertain.

>KOG1586|consensus

Probab=97.56  E-value=0.0043  Score=50.04  Aligned_cols=141  Identities=19%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-----NS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA--  157 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--  157 (314)
                      .+-++.+..-|+.|.-.++|..|-..|.++-.+.     .+ -+..|..-+.||.+ .+..+|+.++++++.+..+-.  
T Consensus        31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf  109 (288)
T KOG1586|consen   31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRF  109 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHH
Confidence            3445677778888888889999999988887653     12 23455556666654 599999999999999876543  


Q ss_pred             ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         158 ----KAYGRMGLAYTQM-NDYKAALEAYTKAAELDPNDP------LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       158 ----~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                          ..+..+|.+|... .+++.|+.+|+++-+......      ..+...+..-..+++|.+|+      ..+.++++.
T Consensus       110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai------~iyeqva~~  183 (288)
T KOG1586|consen  110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI------DIYEQVARS  183 (288)
T ss_pred             HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence                4556889988765 899999999999988654421      24455566667889999999      888899998


Q ss_pred             ccCChHH
Q psy4130         227 VLSDPSI  233 (314)
Q Consensus       227 ~~~~p~~  233 (314)
                      .+.|+-+
T Consensus       184 s~~n~LL  190 (288)
T KOG1586|consen  184 SLDNNLL  190 (288)
T ss_pred             hccchHH
Confidence            8888865

>KOG0530|consensus

Probab=97.56  E-value=0.0026  Score=52.10  Aligned_cols=139  Identities=14%  Similarity=0.053  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK-LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      +..+-++++.+.+.-+|.+-.+|..+-.+....|++. .-+..++.++..+.++--+|...-.+....+.++.-+.+..+
T Consensus        93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            3555566666666666666666666666666666665 566666666666666666666666666666666666666666


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhccccc-CCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNNSSS-ASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .++.+-.|-.+|...-.+......... +. -...+.-..+.+...|+|...|+.+..++..
T Consensus       173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~-le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  173 LLEEDIRNNSAWNQRYFVITNTKGVISKAE-LERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHhhhccchhheeeEEEEeccCCccHHH-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            666665554454433222222111111 10 0000022234555566666666666666553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.54  E-value=0.0015  Score=59.83  Aligned_cols=155  Identities=15%  Similarity=0.042  Sum_probs=103.3

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhc-------hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYY-------KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      .|+=+.++.++.++.+ .++. ..+...+..  +|....       ..........++.......|+.+-.++..|..+.
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            5677888999998876 3322 222222222  111100       0111111222233334455777888999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKA  175 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~  175 (314)
                      ..|+.++|++.|++++.....    ..-+++.++.++..+.+|++|..++.+.++.+.- .+...|..|.++...++.+.
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~  358 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE  358 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence            999999999999998853322    2346889999999999999999999999997543 34556677888999998866


Q ss_pred             HHHHHHHHHhh
Q psy4130         176 ALEAYTKAAEL  186 (314)
Q Consensus       176 A~~~~~~al~~  186 (314)
                      +...-+++.++
T Consensus       359 ~~~~~~~a~~l  369 (468)
T PF10300_consen  359 AKEHKKEAEEL  369 (468)
T ss_pred             hhhhHHHHHHH
Confidence            66666666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10941 hypothetical protein; Provisional

Probab=97.52  E-value=0.0017  Score=54.68  Aligned_cols=77  Identities=23%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      ....++=.+|.+.++++.|+.+.+..+.++|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..-...+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            34667888899999999999999999999999999999999999999999999999999999999998876554444

>KOG1585|consensus

Probab=97.52  E-value=0.0039  Score=50.63  Aligned_cols=124  Identities=17%  Similarity=0.063  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCc
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKID-----PHY  156 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~  156 (314)
                      -+..|..-+.+|...++|++|..++.++.+....+.      .++-..+.....+..+.+++..+++|..+.     |+-
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            355677888889999999999999999997654432      355667788888999999999999999874     444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCC
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +..-...+--.....++++|++.|++++.+-..+      .+.+...+.++.++.++.+|.
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence            4444444555667789999999999998875443      345677788899999999885

>KOG2396|consensus

Probab=97.51  E-value=0.0023  Score=57.07  Aligned_cols=94  Identities=14%  Similarity=0.126  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND-YKAALEAYTKAAE  185 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~  185 (314)
                      .-...|+.++...+.+...|.+......+.+.+.+--..|.+++..+|+++..|..-|...+.-+. .+.|...+.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345678999999999999999988777777889999999999999999999999999998887776 9999999999999


Q ss_pred             hCCCCHHHHHHHHHH
Q psy4130         186 LDPNDPLYANNMQAA  200 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~  200 (314)
                      .+|+++..|...-..
T Consensus       169 ~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  169 FNPDSPKLWKEYFRM  183 (568)
T ss_pred             cCCCChHHHHHHHHH
Confidence            999999887655443

>PRK10941 hypothetical protein; Provisional

Probab=97.49  E-value=0.0028  Score=53.31  Aligned_cols=79  Identities=15%  Similarity=0.092  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+.+.++=.++.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|..+++..++..|+++.+-.....+
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            3556777888899999999999999999999999999999999999999999999999999999999999876655443

>KOG1941|consensus

Probab=97.48  E-value=0.00062  Score=58.21  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----------NPVYYCNRAASNNKLKNYKLALRDCQIAIKID-----  153 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----  153 (314)
                      ..++..+|..+-...|+++|+.+..++.++...          ...+.+.++..+..+|....|.++++++.++.     
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            357888999999999999999999999886432          12467788999999999999999999988874     


Q ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccc
Q psy4130         154 -PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       154 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~  207 (314)
                       |..+....-+|.+|...|+.+.|..-|+.+...-..      ...+....+.+.....-.
T Consensus       242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~  302 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ  302 (518)
T ss_pred             hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence             334566778899999999999999999988876432      123445555555444333

>KOG4507|consensus

Probab=97.47  E-value=0.00056  Score=61.92  Aligned_cols=109  Identities=17%  Similarity=0.108  Sum_probs=95.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV-YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      ..|....-.|+...|+.++..|+-..|.... ...++|.++.+-+-..+|-..+.+++.++...+-.++.+|..+..+++
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN  691 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence            3444556689999999999999998886543 478999999999999999999999999998888999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMS  202 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  202 (314)
                      .+.|++.|+.|++++|+++.+...|-.+.+
T Consensus       692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  692 ISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999999988777766655

>KOG2053|consensus

Probab=97.43  E-value=0.012  Score=56.08  Aligned_cols=142  Identities=11%  Similarity=0.033  Sum_probs=91.1

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      .+++.+|.....+.++..|   ...+                                   +....|..+++.|..++|.
T Consensus        22 ~~qfkkal~~~~kllkk~P---n~~~-----------------------------------a~vLkaLsl~r~gk~~ea~   63 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHP---NALY-----------------------------------AKVLKALSLFRLGKGDEAL   63 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCC---CcHH-----------------------------------HHHHHHHHHHHhcCchhHH
Confidence            4578888888888888888   3322                                   3444556677777777777


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      .+++..-...+++...+-.+-.||..++++++|+.+|++++..+|. -+..+.+-.+|.+.+.|.+=-+.--+.-+..|+
T Consensus        64 ~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen   64 KLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK  142 (932)
T ss_pred             HHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            6666655566666666777777777777777777777777777777 666666666677766665544443344445566


Q ss_pred             CHH-HHHHHHHHHHHhcccccC
Q psy4130         190 DPL-YANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       190 ~~~-~~~~l~~~~~~~~~~~~A  210 (314)
                      ++- .|..+..+.......++.
T Consensus       143 ~~yyfWsV~Slilqs~~~~~~~  164 (932)
T KOG2053|consen  143 RAYYFWSVISLILQSIFSENEL  164 (932)
T ss_pred             ccchHHHHHHHHHHhccCCccc
Confidence            543 334444444444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.36  E-value=0.093  Score=46.68  Aligned_cols=192  Identities=11%  Similarity=0.005  Sum_probs=119.4

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-----HHH-Hhchhh-----hhhhhccCCCCCChhhHHHHHHHHHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIES-----LFQ-LYYKDE-----VLQWYSNINFSPTEEVKIEAEKYKNLGN   97 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-----~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (314)
                      .+++..+|-.++.-...++|+..-...+.++.     ++. ......     ..-|  ...+....+....+..+..-|.
T Consensus       310 k~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw--e~~qs~DiDrqQLvh~L~~~Ak  387 (549)
T PF07079_consen  310 KQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW--EEIQSYDIDRQQLVHYLVFGAK  387 (549)
T ss_pred             HHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH--HHHHhhcccHHHHHHHHHHHHH
Confidence            36777888888888888889442111111110     111 000000     0111  1111123334455677888888


Q ss_pred             HHHhcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHh---------CC---CcHHHHHH
Q psy4130          98 TAMQQDK-PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR--DCQIAIKI---------DP---HYAKAYGR  162 (314)
Q Consensus        98 ~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~p---~~~~~~~~  162 (314)
                      -+.+.|. -++|++.++.+++..|.+..+-..  ...+-...|.+|+.  .+-+.+.+         .|   .+.+.-..
T Consensus       388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~  465 (549)
T PF07079_consen  388 HLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF  465 (549)
T ss_pred             HHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence            9999888 889999999999988887643221  12222333444432  22222222         22   23344444


Q ss_pred             HH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130         163 MG--LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       163 lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                      |+  ..++..|+|.++.-+-.-..++.| .+.++..+|.|.....+|++|.          +....+|.+.+++.
T Consensus       466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~----------~~l~~LP~n~~~~d  529 (549)
T PF07079_consen  466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAW----------EYLQKLPPNERMRD  529 (549)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHH----------HHHHhCCCchhhHH
Confidence            54  457889999999999999999999 8999999999999999999996          88888888776543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4507|consensus

Probab=97.35  E-value=0.0015  Score=59.22  Aligned_cols=111  Identities=18%  Similarity=0.186  Sum_probs=90.2

Q ss_pred             cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        21 ~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      ...|+.-..+|+...|+.|+..++...|   ....                                  -...+++++..
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p---~~~~----------------------------------v~~v~la~~~~  653 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAP---LQQD----------------------------------VPLVNLANLLI  653 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccCh---hhhc----------------------------------ccHHHHHHHHH
Confidence            4467777889999999999999999888   3211                                  13566777788


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      +.+-.-.|-..+.+++.+....+-.++.+|..+..+.+.+.|++.++.|++++|+++.....|-.+.+
T Consensus       654 ~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  654 HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            88888889999999999987788889999999999999999999999999999999877665554443

>KOG2610|consensus

Probab=97.34  E-value=0.0041  Score=52.88  Aligned_cols=157  Identities=11%  Similarity=-0.121  Sum_probs=98.7

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...|++.+|....++.++-.|++.-...+.-...+..............++.+-....|-..-..-.++..+...|-|++
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            34677778888888888888843222111111122222111111111112221122333334455566777788889999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----AKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      |.+.-+++++++|.+..+....+.++.-.+++.++.+...+.-......    .--|..-+.++..-+.|+.|++.|.+-
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence            9999999999999988888888888888899999988887654432221    133556677888888999999888864


Q ss_pred             H
Q psy4130         184 A  184 (314)
Q Consensus       184 l  184 (314)
                      +
T Consensus       274 i  274 (491)
T KOG2610|consen  274 I  274 (491)
T ss_pred             H
Confidence            4

>KOG3824|consensus

Probab=97.33  E-value=0.0013  Score=55.10  Aligned_cols=81  Identities=16%  Similarity=0.071  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ...+..-...+.-..+.|+.++|...|+.++.++|+++.++...|......++.-+|-++|-+|+.++|.+.+++.+.+.
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34455566667777889999999999999999999999999999999999999999999999999999999999887764


Q ss_pred             H
Q psy4130         166 A  166 (314)
Q Consensus       166 ~  166 (314)
                      .
T Consensus       193 T  193 (472)
T KOG3824|consen  193 T  193 (472)
T ss_pred             c
Confidence            3

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.33  E-value=0.0082  Score=43.08  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             HHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q psy4130          90 EKYKNL--GNTAMQQDKPEQAVIEYSKAIDCDNS------------NPVYYCNRAASNNKLKNYKLALRDCQIAIKI---  152 (314)
Q Consensus        90 ~~~~~~--g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---  152 (314)
                      .+|..+  |.-.+..|.|++|...+++++....+            ++-++..|+.++..+|+|++++....+++..   
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            344444  44456679999999999999986432            2457888999999999999998888888754   


Q ss_pred             ----CCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         153 ----DPHYA----KAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       153 ----~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                          +.+..    .+.+..+.++..+|+.++|+..|+++-++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                44433    45678899999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.33  E-value=0.0017  Score=39.86  Aligned_cols=42  Identities=10%  Similarity=0.166  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      .++.+|..++++|+|++|..+.+.+++++|+|..+......+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            345555566666666666666666666666665554444443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.32  E-value=0.016  Score=50.39  Aligned_cols=155  Identities=12%  Similarity=-0.018  Sum_probs=103.6

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh---hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD---EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ...|+++.|.+.|+..+. +|   +.-...+..+|......   +....+   .......-|..++++...-...+..|+
T Consensus       131 l~eG~~~~Ar~kfeAMl~-dP---EtRllGLRgLyleAqr~GareaAr~y---Ae~Aa~~Ap~l~WA~~AtLe~r~~~gd  203 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD-DP---ETRLLGLRGLYLEAQRLGAREAARHY---AERAAEKAPQLPWAARATLEARCAAGD  203 (531)
T ss_pred             HhcCchHHHHHHHHHHhc-Ch---HHHHHhHHHHHHHHHhcccHHHHHHH---HHHHHhhccCCchHHHHHHHHHHhcCC
Confidence            357899999999988755 66   55555565666544422   222221   122233445556677777777888999


Q ss_pred             HHHHHHHHHHHHHc---CCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130         105 PEQAVIEYSKAIDC---DNSNPV---YYCNRAASNN-KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       105 ~~~A~~~~~~al~~---~p~~~~---~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      |+.|++..+.....   .++-.+   +-..-+.+.. -.-+...|..+..+++++.|+...+-..-+.+++..|+..++-
T Consensus       204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~  283 (531)
T COG3898         204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS  283 (531)
T ss_pred             hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence            99999998876653   222211   1111122111 2246888899999999999998888888888888999888888


Q ss_pred             HHHHHHHhhCCC
Q psy4130         178 EAYTKAAELDPN  189 (314)
Q Consensus       178 ~~~~~al~~~p~  189 (314)
                      ..++.+.+..|.
T Consensus       284 ~ilE~aWK~ePH  295 (531)
T COG3898         284 KILETAWKAEPH  295 (531)
T ss_pred             hHHHHHHhcCCC
Confidence            888888888774

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.30  E-value=0.00056  Score=37.32  Aligned_cols=28  Identities=32%  Similarity=0.254  Sum_probs=11.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDP  154 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p  154 (314)
                      +.+|.++...|++++|+..|+++++..|
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3334444444444444444444444333

>KOG2471|consensus

Probab=97.27  E-value=0.0013  Score=58.42  Aligned_cols=141  Identities=12%  Similarity=0.037  Sum_probs=115.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------cHHHHHHHH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA-IKIDPH--------YAKAYGRMG  164 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg  164 (314)
                      .....+....+...+....+-++....+.+.+....+..++-.|+|.+|.+.+... +...|.        ....|.++|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            33445567777888888888888777888899999999999999999999887653 222333        235678999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         165 LAYTQMNDYKAALEAYTKAAE-L--------DP---------NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      .+++.++.|.-+..+|.++++ .        .|         ..-++.+++|..+...|+.-.|.      .-+....+.
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Af------qCf~~av~v  364 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAF------QCFQKAVHV  364 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHH------HHHHHHHHH
Confidence            999999999999999999996 1        12         23468999999999999999998      999999999


Q ss_pred             ccCChHHHHHHHHh
Q psy4130         227 VLSDPSIQQVFGEL  240 (314)
Q Consensus       227 ~~~~p~~~~~l~~~  240 (314)
                      .-.+|.+|-.++..
T Consensus       365 fh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  365 FHRNPRLWLRLAEC  378 (696)
T ss_pred             HhcCcHHHHHHHHH
Confidence            99999999988854

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.26  E-value=0.00063  Score=37.10  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      ++++.+|.++...|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>KOG3824|consensus

Probab=97.25  E-value=0.0014  Score=54.97  Aligned_cols=73  Identities=19%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       128 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      +.|.-..+.|+.++|...|+.|+.++|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3444556789999999999999999999999999999999999999999999999999999999988777654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.19  E-value=0.0082  Score=42.68  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCcHHHH
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKN-----------YKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      ++..++.+|++-+|++..+..+...+++.   ..+..-|.++.++..           .-.+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778999999999999999999887766   455666777765532           3468899999999999998888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +.+|.-+-....|+++..-.++++.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888777777788888888887764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.19  E-value=0.015  Score=44.45  Aligned_cols=109  Identities=13%  Similarity=-0.006  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ....+.....+....++.+++...+.-.--+.|..+.+-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            34567777788888889999999888888889999999999999999999999999999999888899998888899999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      ..+++..-=.. -.++++..+ ++.+.....
T Consensus        89 ~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv~  117 (160)
T PF09613_consen   89 YALGDPSWRRY-ADEVLESGA-DPDARALVR  117 (160)
T ss_pred             HHcCChHHHHH-HHHHHhcCC-ChHHHHHHH
Confidence            99888765432 233455444 444444333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.17  E-value=0.0009  Score=37.53  Aligned_cols=21  Identities=14%  Similarity=0.139  Sum_probs=7.7

Q ss_pred             HHHHHHHHccCHHHHHHHHHH
Q psy4130         128 NRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus       128 ~la~~~~~~~~~~~A~~~~~~  148 (314)
                      ++|.+|...|+|++|+.+|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            333333333333333333333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.16  E-value=0.093  Score=45.00  Aligned_cols=169  Identities=20%  Similarity=0.129  Sum_probs=119.3

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-----hhhhhhhccCCCCCChhhHHHHHHHHHHHH
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-----DEVLQWYSNINFSPTEEVKIEAEKYKNLGN   97 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (314)
                      .+........+..|+..+..+-....   ......++.+|.....     ..+..|+.      .......+...+.+|.
T Consensus        47 ~~~~~~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~------~~a~~g~~~a~~~lg~  117 (292)
T COG0790          47 NGAGSAYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYR------CAAADGLAEALFNLGL  117 (292)
T ss_pred             ccccccccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHH------HHhhcccHHHHHhHHH
Confidence            33444567888999999998876333   2334455555554442     22333322      2223345667888999


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          98 TAMQ----QDKPEQAVIEYSKAIDCDNSN-PVYYCNRAASNNKLK-------NYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        98 ~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      .+..    ..++.+|..+|+++....-.. ..+.+.+|.+|..-.       +...|...|.++-...  ++.+.+.+|.
T Consensus       118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~  195 (292)
T COG0790         118 MYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGR  195 (292)
T ss_pred             HHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence            9887    559999999999999874333 234788888887642       3347999999988876  8899999998


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         166 AYTQ----MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       166 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      +|..    ..++.+|..+|.++.+...  ....+.++ ++...|
T Consensus       196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            8765    3489999999999998876  78888888 666666

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.16  E-value=0.0032  Score=43.56  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcc
Q psy4130         143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNN  206 (314)
Q Consensus       143 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~  206 (314)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++++  ..+...+-.++..+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            445555566666666666666666666666666666666666655543  3344444444444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.12  E-value=0.0033  Score=38.54  Aligned_cols=40  Identities=25%  Similarity=0.322  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      .++.+|..+.++|+|++|..+++.+++++|++..+.....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4566777777777777777777777777777766654443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.08  E-value=0.0075  Score=41.71  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--AKAYGRMGLAYTQMND  172 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~  172 (314)
                      .+..+++.+..+|++..+.+.+|.++...|++++|++.+-.+++.++++  ..+.-.+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4667899999999999999999999999999999999999999999876  3444444444444444

>KOG2047|consensus

Probab=97.07  E-value=0.016  Score=53.43  Aligned_cols=167  Identities=11%  Similarity=0.073  Sum_probs=100.0

Q ss_pred             hhcHHHHHHHHHHHc-CCCCCCCCC----chhhHHHHHHHhchhhhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          30 KEGIEVAVECLCKAY-DIPDNIDPA----SNVDIESLFQLYYKDEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al-~~~p~~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      .++..+-+..|..|+ ..+|.....    ..+.++.+|...+....+.. ......-.-....+.+..|...|..-.+..
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            455666677776665 466643221    12223345555554322211 001111112233455677777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNS-------------------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      +++.|..+.+.|+.. |.                   +..+|...+......|-++.....|++.+.+.--.+....+.|
T Consensus       440 ~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA  518 (835)
T KOG2047|consen  440 NFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA  518 (835)
T ss_pred             hHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            777777777777653 21                   2245666677777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDP--NDPLYANNM  197 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l  197 (314)
                      ..+....-+++|.+.|++.+.+.+  .-.++|..+
T Consensus       519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY  553 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY  553 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence            777777777888888887777653  334444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.05  E-value=0.18  Score=44.16  Aligned_cols=139  Identities=16%  Similarity=0.027  Sum_probs=106.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcH---HHHHHHHHHHHH-c
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID---PHYA---KAYGRMGLAYTQ-M  170 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~---~~~~~lg~~~~~-~  170 (314)
                      .....|+.+.|+.+-+.+-...|.-+.++...-......|+|+.|++..+......   ++..   .+-..-+.+... .
T Consensus       163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld  242 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD  242 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence            34568899999999999999999888877776667778899999998887765442   3222   222222332222 3


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      -+...|...-.+++++.|+...+-..-+..+.+.|+..++       ..+.+...+...+|+++.++..+.++
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg-------~~ilE~aWK~ePHP~ia~lY~~ar~g  308 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG-------SKILETAWKAEPHPDIALLYVRARSG  308 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh-------hhHHHHHHhcCCChHHHHHHHHhcCC
Confidence            3678888888999999999988888889999999999999       67778888888999999988877443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.04  E-value=0.0015  Score=36.67  Aligned_cols=28  Identities=39%  Similarity=0.637  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +|.+||.++...|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999996654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.01  E-value=0.027  Score=49.45  Aligned_cols=124  Identities=14%  Similarity=0.063  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCcHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----DNSNPVYYCNRAASNNK---LKNYKLALRDCQI-AIKIDPHYAK  158 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~  158 (314)
                      -.++....+=..|....+|+.-+...+..-.+    -+..+.+....|.++.+   .|+.++|+..+.. .....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            34555666777788899999998888876555    44566777888999998   8999999999999 4455677899


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         159 AYGRMGLAYTQM---------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       159 ~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .+..+|.+|...         ...++|+.+|.++.+++|+. -.-.|++.++...|...+..
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccch
Confidence            999999988652         24789999999999999753 45577778888888765554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.98  E-value=0.0016  Score=34.65  Aligned_cols=29  Identities=31%  Similarity=0.419  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDP  154 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p  154 (314)
                      +..+|.++..++++++|+.+++++++++|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44444444444444444444444444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3364|consensus

Probab=96.96  E-value=0.025  Score=41.64  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         122 NPVYYCNRAASNNKLK---NYKLALRDCQIAIK-IDPHY-AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      .....+++|.++.+..   +..+.+.+++..++ -+|.. -+..+.|+..++++++|+.++.+++..++..|+|..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4556788888888765   46678889999886 44443 3678889999999999999999999999999999887766


Q ss_pred             HHHHHHHh
Q psy4130         197 MQAAMSNL  204 (314)
Q Consensus       197 l~~~~~~~  204 (314)
                      --.+..+.
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            65555544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.95  E-value=0.045  Score=48.16  Aligned_cols=125  Identities=16%  Similarity=0.101  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C---
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKID---P---  154 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p---  154 (314)
                      .......|...+.+..+.|.++.|...+.++...++.    .+.+.+..+.++...|+..+|+..++..+...   +   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            4566778999999999999999999999998886522    46677888999999999999999999888811   0   


Q ss_pred             ----------------------------CcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         155 ----------------------------HYAKAYGRMGLAYTQM------NDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       155 ----------------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                                                  ..+.++..+|......      +..++++..|.+++.++|+...+|+.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        0125677788887777      889999999999999999999999999999


Q ss_pred             HHHhccccc
Q psy4130         201 MSNLNNSSS  209 (314)
Q Consensus       201 ~~~~~~~~~  209 (314)
                      +...-+.+.
T Consensus       302 ~~~~~~~~~  310 (352)
T PF02259_consen  302 NDKLLESDP  310 (352)
T ss_pred             HHHHHHhhh
Confidence            887655544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.94  E-value=0.073  Score=46.86  Aligned_cols=141  Identities=12%  Similarity=0.018  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQ---QDKPEQAVIEYSKA-IDCDNSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIK  151 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~  151 (314)
                      .......-+..|.++.+   .|+.++|+..+..+ ....+.+++.+..+|.+|...         ...++|+.+|.++..
T Consensus       175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            45566778888888988   99999999999994 455678899999999998754         347899999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh-----------CCCCHHHHHHHHHHHHHhcccccCCCCCCCcch
Q psy4130         152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA-EL-----------DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPG  219 (314)
Q Consensus       152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~-----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  219 (314)
                      ++|+. ..=.+++.++...|...+....+++.. .+           .-.+-...-.+..+..-.|++++|.      ..
T Consensus       255 ~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~------~a  327 (374)
T PF13281_consen  255 IEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI------QA  327 (374)
T ss_pred             CCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH------HH
Confidence            99653 444566677777665333322222211 11           1123344556677777788888886      55


Q ss_pred             HHHHHHhccCChHHHH
Q psy4130         220 LSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       220 ~~~~~~~~~~~p~~~~  235 (314)
                      ...+.+.   +|..|.
T Consensus       328 ~e~~~~l---~~~~W~  340 (374)
T PF13281_consen  328 AEKAFKL---KPPAWE  340 (374)
T ss_pred             HHHHhhc---CCcchh
Confidence            5454433   355554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.92  E-value=0.0016  Score=52.31  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=47.8

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130         132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  191 (314)
                      ...+.++.+.|.+.|.+++.+.|.+...|+++|....+.|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345667788888888888888888888888888888888888888888888888888754

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.86  E-value=0.081  Score=40.52  Aligned_cols=113  Identities=14%  Similarity=0.073  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      ..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+..-.|..+.+.-.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34555666677788999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       204 ~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +++.+=        ..+...+.....||+...++..+....
T Consensus        91 ~~D~~W--------r~~A~evle~~~d~~a~~Lv~~Ll~~~  123 (160)
T PF09613_consen   91 LGDPSW--------RRYADEVLESGADPDARALVRALLARA  123 (160)
T ss_pred             cCChHH--------HHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            876521        111122223334777777777665553

>KOG3617|consensus

Probab=96.80  E-value=0.2  Score=47.96  Aligned_cols=123  Identities=17%  Similarity=0.115  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC---------------------DNSNPVYYCNRAASNNKLKNYKLALRDCQ  147 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~  147 (314)
                      ...|...|..+...|+.+.|+.+|..|-..                     ...+..+.|.+|.-|...|++.+|+..|.
T Consensus       912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            345667777788888888888888776543                     12345678889999999999999999888


Q ss_pred             HHHHh------CCCcH--HHH------------HHHHHHHHHcC-CHHHHHHHHHHH------H----------------
Q psy4130         148 IAIKI------DPHYA--KAY------------GRMGLAYTQMN-DYKAALEAYTKA------A----------------  184 (314)
Q Consensus       148 ~al~~------~p~~~--~~~------------~~lg~~~~~~g-~~~~A~~~~~~a------l----------------  184 (314)
                      +|-..      ...+.  +-+            ..-+..|...| ....|...|.+|      +                
T Consensus       992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen  992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence            75433      22111  111            11122233333 344444433321      1                


Q ss_pred             -hhCC-CCHHHHHHHHHHHHHhcccccCC
Q psy4130         185 -ELDP-NDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       185 -~~~p-~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                       .++| .++......+.......+|++|.
T Consensus      1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred             HhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence             2344 36778888888888888898885

>smart00028 TPR Tetratricopeptide repeats

Probab=96.79  E-value=0.0024  Score=33.89  Aligned_cols=33  Identities=52%  Similarity=0.795  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      .+++.+|.++...+++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.75  E-value=0.12  Score=40.77  Aligned_cols=129  Identities=15%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCH
Q psy4130         100 MQQDKPEQAVIEYSKAIDCDNSNPV---YYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDY  173 (314)
Q Consensus       100 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~  173 (314)
                      ...+.. +.+...++....+|....   +-..++..+...+++++|+..++.++....+.   ..+-.+|+.++..+|.+
T Consensus        64 ~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~  142 (207)
T COG2976          64 VQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA  142 (207)
T ss_pred             HhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH
Confidence            334444 555666666666655543   34567888999999999999999999765443   35678999999999999


Q ss_pred             HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         174 KAALEAYTKAAELDPN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      ++|+..+.....  ++ .+..-...|.++...|+.++|+      ..+....... .+|..+.++.
T Consensus       143 D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar------~ay~kAl~~~-~s~~~~~~lq  199 (207)
T COG2976         143 DAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEAR------AAYEKALESD-ASPAAREILQ  199 (207)
T ss_pred             HHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHH------HHHHHHHHcc-CChHHHHHHH
Confidence            999988874432  22 1234567899999999999998      7776666665 4444444433

>KOG1550|consensus

Probab=96.72  E-value=0.089  Score=49.51  Aligned_cols=170  Identities=19%  Similarity=0.146  Sum_probs=112.1

Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHh-ch-h----hhhhhhccCCCC-CChhhHHHHHHHHHHHHHHHhcC-
Q psy4130          32 GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY-YK-D----EVLQWYSNINFS-PTEEVKIEAEKYKNLGNTAMQQD-  103 (314)
Q Consensus        32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~-~~-~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~-  103 (314)
                      +...|..+|+.+.+..-   -.....++.+|... .. .    .+..+....... ........+.+.+.+|.+|.+.. 
T Consensus       227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence            46788888888877665   45556666666554 11 1    111121111000 00001113446778899998743 


Q ss_pred             ----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q psy4130         104 ----KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND  172 (314)
Q Consensus       104 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~  172 (314)
                          ++..|..+|.++-+..  ++.+.+.+|.++..-.   ++..|..+|..|...  .++.+.++++.++..    .-+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence                7788999999998874  5667788999988655   678999999999876  578999999998875    347


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cccccC
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNL-NNSSSA  210 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A  210 (314)
                      ...|..++.++.+.+  ++.+.+.++.++..- +.++.+
T Consensus       380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~  416 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA  416 (552)
T ss_pred             HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence            899999999999987  344455555554432 444444

>KOG2047|consensus

Probab=96.64  E-value=0.072  Score=49.38  Aligned_cols=185  Identities=11%  Similarity=0.004  Sum_probs=119.6

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCC-chhhHHH--HHHHhc-hhhhhhh-hcc-CCCC------------CChhhHH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPA-SNVDIES--LFQLYY-KDEVLQW-YSN-INFS------------PTEEVKI   87 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~-~~~~l~~--~~~~~~-~~~~~~~-~~~-~~~~------------~~~~~~~   87 (314)
                      .++..|+++.|...|+++++.+-...++ ..+++..  .-.... .+++... ... ....            .-..--.
T Consensus       396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr  475 (835)
T KOG2047|consen  396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR  475 (835)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence            3456889999999999998876522222 2222222  100000 0111000 000 0000            0011123


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcHHHHHH---
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP--HYAKAYGR---  162 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~---  162 (314)
                      ....|...++.....|-++.....|++.+.+.--.|....|.|..+....-++++.+.|++.+.+.+  .-.+.|..   
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt  555 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT  555 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence            4567888888888999999999999999999888899999999999999999999999999999863  43444433   


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccC
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A  210 (314)
                      ....-+.-.+.+.|...|++|++..|..  ..++..++.+..+.|-...|
T Consensus       556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~a  605 (835)
T KOG2047|consen  556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHA  605 (835)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3333444558899999999999988842  23455555555555544444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.63  E-value=0.0062  Score=51.24  Aligned_cols=87  Identities=11%  Similarity=0.088  Sum_probs=60.8

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         111 EYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR-MGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       111 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      .|.++....|.++..|...+....+.|-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++.++|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3445555667777777777766667777777777777777777777777765 333456677777777777777777777


Q ss_pred             CHHHHHHH
Q psy4130         190 DPLYANNM  197 (314)
Q Consensus       190 ~~~~~~~l  197 (314)
                      ++..|...
T Consensus       175 ~p~iw~ey  182 (435)
T COG5191         175 SPRIWIEY  182 (435)
T ss_pred             CchHHHHH
Confidence            77766544

>KOG4814|consensus

Probab=96.62  E-value=0.031  Score=51.54  Aligned_cols=98  Identities=14%  Similarity=0.012  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ...+++-|.-+++..+|..+++.|...+..-|.+      +....+++.||..+.+.+.|++++++|-+.+|.++-....
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            3457778888999999999999999999876654      4567889999999999999999999999999999988888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      .-.+....+.-++|+.+..+....
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhh
Confidence            888889999999999888776554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.60  E-value=0.077  Score=46.96  Aligned_cols=126  Identities=14%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CC------------CCH---HHHHHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------------DN------------SNP---VYYCNRAAS  132 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la~~  132 (314)
                      ....|.+.+.+..++.++..+|++..|.+..++||-.              ++            .|.   .+.+.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            3566778899999999999999999999999998732              11            122   244556677


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhc
Q psy4130         133 NNKLKNYKLALRDCQIAIKIDPH-YAKA-YGRMGLAYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLN  205 (314)
Q Consensus       133 ~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~  205 (314)
                      +.+.|.+..|.++++-.+.++|. ++-. .+.+=....+.++++--+..++........     -|..-+.++.++..++
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~  192 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE  192 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence            88899999999999999999999 7744 444444556778888777777765542111     2346677788888888


Q ss_pred             cc
Q psy4130         206 NS  207 (314)
Q Consensus       206 ~~  207 (314)
                      +.
T Consensus       193 ~~  194 (360)
T PF04910_consen  193 KE  194 (360)
T ss_pred             Cc
Confidence            77

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.58  E-value=0.05  Score=44.33  Aligned_cols=101  Identities=15%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHc----CCC---CHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------cHH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDC----DNS---NPVYYCNRAASNNKLKNYK-------LALRDCQIAIKIDPH------YAK  158 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~-------~A~~~~~~al~~~p~------~~~  158 (314)
                      +.....+++|++.|.-|+-.    ...   -+.++..+|.+|..+++.+       .|+..|.+++.....      ...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            33456788888888877753    111   2567888999999999854       566666666655422      347


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-LYANNMQA  199 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~  199 (314)
                      ..+.+|.+..+.|++++|..+|.+++.....+. .....++.
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            888999999999999999999999998644332 34444443

>KOG0530|consensus

Probab=96.51  E-value=0.073  Score=43.96  Aligned_cols=114  Identities=13%  Similarity=0.074  Sum_probs=100.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-H
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK-A  175 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~  175 (314)
                      ++.+...-..|+..-+.+|.++|.+-.+|..+-.|+..+ .+..+-+.++.+.+.-+|++-..|...-.+...+|++. .
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            345566778899999999999999999998888888765 46788899999999999999999999999999999988 8


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      -++..+.++..+.++-.+|.....+....+.++.-.
T Consensus       132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence            889999999999999999999999999888887653

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.086  Score=48.34  Aligned_cols=114  Identities=19%  Similarity=0.087  Sum_probs=94.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCcHHHHHHH------HHHH
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI-AIKIDPHYAKAYGRM------GLAY  167 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------g~~~  167 (314)
                      +...+...++...+......++..+|.+..++.+++.+....|....++..+.. +....|++......+      +...
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            566677788888999999999999999999999999998887776666655555 999999988766665      8899


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS  208 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  208 (314)
                      ..+|+..++.....++..+.|.++.+...+.....+.-++.
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~  193 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP  193 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence            99999999999999999999999887777776655555544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.50  E-value=0.0051  Score=49.49  Aligned_cols=60  Identities=13%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA  157 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  157 (314)
                      .....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456789999999999999999999999999999999999999999999999999999864

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.49  E-value=0.17  Score=44.56  Aligned_cols=128  Identities=17%  Similarity=0.269  Sum_probs=89.0

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...|.++.|...+.++...++.....                                  .+......+..+...|+..+
T Consensus       157 Rk~g~~~~A~~~l~~~~~~~~~~~~~----------------------------------~~~v~~e~akllw~~g~~~~  202 (352)
T PF02259_consen  157 RKAGNFQLALSALNRLFQLNPSSESL----------------------------------LPRVFLEYAKLLWAQGEQEE  202 (352)
T ss_pred             HHCCCcHHHHHHHHHHhccCCcccCC----------------------------------CcchHHHHHHHHHHcCCHHH
Confidence            34678888888888887766522110                                  23456666777777777777


Q ss_pred             HHHHHHHHHHc-CC---------------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHH
Q psy4130         108 AVIEYSKAIDC-DN---------------------------------SNPVYYCNRAASNNKL------KNYKLALRDCQ  147 (314)
Q Consensus       108 A~~~~~~al~~-~p---------------------------------~~~~~~~~la~~~~~~------~~~~~A~~~~~  147 (314)
                      |+..++..+.. ..                                 ..+.++..+|......      +..++++..|.
T Consensus       203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~  282 (352)
T PF02259_consen  203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK  282 (352)
T ss_pred             HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence            77777766661 00                                 0124556666666666      88899999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCC
Q psy4130         148 IAIKIDPHYAKAYGRMGLAYTQMND-----------------YKAALEAYTKAAELDPN  189 (314)
Q Consensus       148 ~al~~~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~~~~al~~~p~  189 (314)
                      ++++++|....+|+..|..+...=+                 ...|+..|-+++...++
T Consensus       283 ~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  283 EATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999887765422                 13477788888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.35  Score=40.84  Aligned_cols=65  Identities=17%  Similarity=0.122  Sum_probs=34.8

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccccc
Q psy4130         145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       145 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~  209 (314)
                      .+++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+-.  +..+...+-.++...|..+.
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            344455555666666666666666666666665555555554332  34455555555555554443

>KOG3617|consensus

Probab=96.40  E-value=0.052  Score=51.70  Aligned_cols=97  Identities=18%  Similarity=0.106  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI----------DCDNS----------NPVYYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      -..|++.+..+...++.+.|+++|+++=          .-+|.          ++..|..-|..+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            4568899999999999999999998752          22343          345677788888899999999999988


Q ss_pred             HHHh---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         149 AIKI---------------------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       149 al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      |-..                     ...+-.+.|.||.-|...|++.+|+..|.+|-.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            6533                     345667889999999999999999988877543

>KOG1585|consensus

Probab=96.36  E-value=0.18  Score=41.31  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCD-----NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGR  162 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  162 (314)
                      ..+........+.++..+|+++..+.     |+-+..-...+.=.....++++|++.|++++.+-..+      .+.+..
T Consensus        76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen   76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            33344444455555555555555442     2222222223333344455566666666655543221      133344


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~  182 (314)
                      .+.++.+..++.+|-..+.+
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHH
Confidence            45555555566555544444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.29  E-value=0.11  Score=45.19  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=48.0

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130         111 EYSKAIDCDNSNPVYYCNRAASNNKLKN------------YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE  178 (314)
Q Consensus       111 ~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  178 (314)
                      .|++.++.+|.+..+|..+.......-.            .+..+..|++|++.+|++...+..+-.+..+..+.++..+
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            3555555566666666555444333211            3445556666666666666555555555555555566566


Q ss_pred             HHHHHHhhCCCCHHHHHHH
Q psy4130         179 AYTKAAELDPNDPLYANNM  197 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l  197 (314)
                      -+++++..+|++...|..+
T Consensus        87 ~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHHHHHCCCChHHHHHH
Confidence            6666666666655555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.23  E-value=0.35  Score=36.52  Aligned_cols=87  Identities=10%  Similarity=-0.113  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      ..+...........+++++...+...--+.|..+.+-..-|.++...|+|.+|+..++....-.+..+.+--.++.|+..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            44555566666689999999998887788999999999999999999999999999999999988889888899999999


Q ss_pred             cCCHHHH
Q psy4130         170 MNDYKAA  176 (314)
Q Consensus       170 ~g~~~~A  176 (314)
                      +|+.+-=
T Consensus        91 l~Dp~Wr   97 (153)
T TIGR02561        91 KGDAEWH   97 (153)
T ss_pred             cCChHHH
Confidence            9987643

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.15  E-value=0.17  Score=39.94  Aligned_cols=101  Identities=17%  Similarity=0.050  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHH---
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAK---  158 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~---  158 (314)
                      ....++..+|..|.+.|+++.|++.|.++.......   .+.+.++-.+.+..++|.....++.++-.+-..  +..   
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            345689999999999999999999999988765332   356777888888899999999999998876432  232   


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130         159 -AYGRMGLAYTQMNDYKAALEAYTKAAELD  187 (314)
Q Consensus       159 -~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (314)
                       ....-|..+...++|..|-..|-.+....
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence             23345777888899999998887766544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.054  Score=45.11  Aligned_cols=75  Identities=25%  Similarity=0.310  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA  199 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  199 (314)
                      ...++=.++...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.....
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            445666678888999999999999999999999999999999999999999999999999999998776544433

>KOG0546|consensus

Probab=96.09  E-value=0.0086  Score=51.28  Aligned_cols=118  Identities=27%  Similarity=0.296  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN-----------S--------NPVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      ......|...++.++|..|..-|.++++.-.           +        -...+.+++.+-.+.+.+..|+.....++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            4455667788999999999999998886421           1        12356678899999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130         151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  207 (314)
                      ..++....++++++..+....++++|++.+..+....|++..+...+..+.....++
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            999999999999999999999999999999999999999998877777666555444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.08  E-value=0.78  Score=39.11  Aligned_cols=130  Identities=15%  Similarity=0.044  Sum_probs=94.8

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC-CHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD-KPEQ  107 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~  107 (314)
                      ..|+++.|..+|.++-...+.  .+                            .......++.+++.|......+ +++.
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~--~~----------------------------~~~~~~La~~~yn~G~~l~~~~~~~~~   54 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNS--LD----------------------------PDMAEELARVCYNIGKSLLSKKDKYEE   54 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhc--CC----------------------------cHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            578999999999997554420  11                            1223355788999999999999 9999


Q ss_pred             HHHHHHHHHHcC----C---CC-------HHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130         108 AVIEYSKAIDCD----N---SN-------PVYYCNRAASNNKLKNYK---LALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus       108 A~~~~~~al~~~----p---~~-------~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      |+.++++++++-    +   ..       ..++..++.+|...+.++   +|....+.+-.-.|+.+..+...-.++...
T Consensus        55 a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~  134 (278)
T PF08631_consen   55 AVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKS  134 (278)
T ss_pred             HHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhcc
Confidence            999999999872    1   11       245677888998877654   455555556666788777775555555558


Q ss_pred             CCHHHHHHHHHHHHhhCC
Q psy4130         171 NDYKAALEAYTKAAELDP  188 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p  188 (314)
                      ++.+++.+.+.+++..-+
T Consensus       135 ~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  135 FDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             CChhHHHHHHHHHHHhcc
Confidence            999999999999888644

It is also involved in sporulation [].

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.96  E-value=0.085  Score=46.44  Aligned_cols=95  Identities=15%  Similarity=0.197  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CH----------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS--------NP----------VYYCNRAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      .+-..-|..++++++|..|+.-|..+|++...        .+          .+-..+..||.++++.+-|+....+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            34445566778888888888888888876322        11          2345689999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      ++|.+..-+.+.+.+...+.+|.+|-..+--+.
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876554433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.08  Score=44.11  Aligned_cols=67  Identities=19%  Similarity=0.229  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ..++=.++...++++.|..+.++.+.++|+++.-+...|.+|.++|-+..|+      ..+.-.....|++|.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl------~dl~~~~~~~P~~~~  250 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVAL------EDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhH------HHHHHHHHhCCCchH
Confidence            3344445666777777777777777777777777777777777777777777      777777777777764

>KOG1550|consensus

Probab=95.90  E-value=0.17  Score=47.66  Aligned_cols=115  Identities=19%  Similarity=0.130  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQ-----QDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLK-----NYKLALRDCQIAI  150 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al  150 (314)
                      ..+..+...+|.++..     ..+.+.|+.+|+.+.+.     .-..+.+.+.+|.+|.+..     ++..|+..+.++.
T Consensus       241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA  320 (552)
T KOG1550|consen  241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA  320 (552)
T ss_pred             hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence            3456667778877764     46899999999999771     1125567889999999853     7888999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         151 KIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       151 ~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      ...  ++.+.+.+|.++..-.   ++..|.++|..|...  .+..+.++++.|+..=
T Consensus       321 ~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  321 ELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             hcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence            874  6788899999988655   678999999988764  4678999999997753

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.83  E-value=0.41  Score=40.81  Aligned_cols=124  Identities=22%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHcC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---Cc------
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCD----NSN----PVYYCNRAASNNKLK-NYKLALRDCQIAIKI----DP---HY------  156 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~------  156 (314)
                      ..++|+++.|...|.++-...    |+.    ...+++.|.-....+ +++.|+.+++++..+    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356899999999998887654    332    356888999999999 999999999999988    22   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc
Q psy4130         157 -AKAYGRMGLAYTQMNDYK---AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL  228 (314)
Q Consensus       157 -~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  228 (314)
                       ...+..++.++...+.++   +|....+.+-.-.|+.+..+...-.+..+.++.+++.      ..+..++....
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~------~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE------EILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH------HHHHHHHHhcc
Confidence             246778899998888765   4555555666667877776644444444466666665      55555555544

It is also involved in sporulation [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.19  Score=46.20  Aligned_cols=125  Identities=16%  Similarity=0.168  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCN--RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      +.-.-++..+...+..+|.++..+..  +...+...++...+......++..+|.+..++.+|+.+....|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            33344777788888888888886443  4777778899999999999999999999999999999998888777776666


Q ss_pred             HH-HHhhCCCCHHHHHHH------HHHHHHhcccccCCCCCCCcchHHHHHHhccCChHH
Q psy4130         181 TK-AAELDPNDPLYANNM------QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSI  233 (314)
Q Consensus       181 ~~-al~~~p~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~  233 (314)
                      .. +....|++......+      +.....+++..++.      ..+.......+.+|++
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~l~~~~d~~p~~~~~  178 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAE------LALERAVDLLPKYPRV  178 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHH------HHHHHHHHhhhhhhhh
Confidence            65 888999998877777      66666666666665      5666666666777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.79  E-value=0.027  Score=32.26  Aligned_cols=29  Identities=24%  Similarity=0.149  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      .++.++|.+|...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34556666666666666666666666554

>KOG3364|consensus

Probab=95.78  E-value=0.16  Score=37.52  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAID-CDNS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ....++++.++.+..   +..+.+..++..++ ..|. ..++.+.++..+.+.++|++++.+++..++..|++..+....
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345777888887654   57788999999997 4444 346788899999999999999999999999999998876544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.72  E-value=0.2  Score=37.76  Aligned_cols=105  Identities=8%  Similarity=-0.032  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      +.....+-....++.++...+...--+.|+.+..-..-|.++...|+|.+|+..++...+-.+..+...-.++.|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            34444455558999999999999999999999999999999999999999999999999988888888899999999888


Q ss_pred             ccccCCCCCCCcchHHHHHH---hccCChHHHHHHHHhh
Q psy4130         206 NSSSASGSGGVFPGLSEMST---KVLSDPSIQQVFGELF  241 (314)
Q Consensus       206 ~~~~A~~~~~~~~~~~~~~~---~~~~~p~~~~~l~~~~  241 (314)
                      +.+           ....+.   ..-.+|+...+...+.
T Consensus        93 Dp~-----------Wr~~A~~~le~~~~~~a~~Lv~al~  120 (153)
T TIGR02561        93 DAE-----------WHVHADEVLARDADADAVALVRALL  120 (153)
T ss_pred             ChH-----------HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence            652           222222   2234566666666654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.62  E-value=0.13  Score=37.07  Aligned_cols=98  Identities=14%  Similarity=0.131  Sum_probs=70.6

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      .-|.+++|...+.++++..-+.|....                          -+.+..++-.+..++.++...|+|+++
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEa--------------------------FDh~GFDA~chA~Ls~A~~~Lgry~e~   74 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEA--------------------------FDHDGFDAFCHAGLSGALAGLGRYDEC   74 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS-----------------------------HHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhh--------------------------cccccHHHHHHHHHHHHHHhhccHHHH
Confidence            357788999999998877664433311                          233455677788899999999999999


Q ss_pred             HHHHHHHHHc-------CCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130         109 VIEYSKAIDC-------DNSNPV----YYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus       109 ~~~~~~al~~-------~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      +..-.++|..       +.+...    +.+++|.++...|+.++|+..|+.+.++
T Consensus        75 L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   75 LQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            9888888864       333333    4568999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.41  E-value=0.019  Score=48.43  Aligned_cols=86  Identities=5%  Similarity=0.030  Sum_probs=73.5

Q ss_pred             CCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130          78 NFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCN-RAASNNKLKNYKLALRDCQIAIKIDPHY  156 (314)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~  156 (314)
                      ..+.+..-+.++..|...+....+.+.|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            345566677888899999988889999999999999999999999999876 3445677899999999999999999999


Q ss_pred             HHHHHHH
Q psy4130         157 AKAYGRM  163 (314)
Q Consensus       157 ~~~~~~l  163 (314)
                      +..|+..
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            9877643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.37  E-value=0.68  Score=40.39  Aligned_cols=107  Identities=7%  Similarity=-0.022  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ---MNDYKAALEAYT  181 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~  181 (314)
                      .+.-+..|++||+.+|++..++..+-.+..+..+.++..+-+++++..+|++...|...-.....   .-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            45667889999999999999988888888888899999999999999999999888765444332   335777777777


Q ss_pred             HHHhhCCC------------------CHHHHHHHHHHHHHhcccccCC
Q psy4130         182 KAAELDPN------------------DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       182 ~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++..-..                  -..+...+.......|-.+.|+
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av  174 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV  174 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Confidence            77764211                  1235566777788889998886

>KOG2300|consensus

Probab=95.31  E-value=0.51  Score=42.56  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-N--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-----  156 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----  156 (314)
                      ....+..++.+|......+.|+.|...|..++++-.. +  +.+..|+|..|...++-+.--+.++.   +.|.+     
T Consensus       363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~s  439 (629)
T KOG2300|consen  363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLS  439 (629)
T ss_pred             HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcch
Confidence            3445778889999999999999999999999987432 2  33557899999998876554444433   34442     


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         157 -----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-D-----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       157 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                           ..+++..|...+.++++.||...+.+.++...- +     ...+..|+.+....|+..++....   .--...++
T Consensus       440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv---rpamqlAk  516 (629)
T KOG2300|consen  440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV---RPAMQLAK  516 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc---chHHHHHh
Confidence                 256788899999999999999999999987621 1     235667788888888888875111   12224455


Q ss_pred             hccCCh-HHH--HHHHHhhcC
Q psy4130         226 KVLSDP-SIQ--QVFGELFAN  243 (314)
Q Consensus       226 ~~~~~p-~~~--~~l~~~~~~  243 (314)
                      +++.-| .+|  ..+..++..
T Consensus       517 Ki~Di~vqLws~si~~~L~~a  537 (629)
T KOG2300|consen  517 KIPDIPVQLWSSSILTDLYQA  537 (629)
T ss_pred             cCCCchHHHHHHHHHHHHHHH
Confidence            555544 233  344445444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.29  E-value=0.053  Score=30.96  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      ..++.++|.+|...|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999876

>KOG1258|consensus

Probab=95.27  E-value=0.95  Score=41.87  Aligned_cols=132  Identities=8%  Similarity=-0.078  Sum_probs=113.8

Q ss_pred             CCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHH
Q psy4130          80 SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAK  158 (314)
Q Consensus        80 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~  158 (314)
                      -....++.....|......-...|+++...-.|++++--.......|...+.-....|+..-|-..+.++.+.. |..+.
T Consensus       288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~  367 (577)
T KOG1258|consen  288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI  367 (577)
T ss_pred             ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence            34556677778888888888999999999999999999999999999999999999999999998888888875 66677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ....-+..-...|++..|...+++...--|+...+-.....+..+.|+.+.+.
T Consensus       368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            77777788888999999999999999988998888777778888888888774

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.24  E-value=2  Score=38.13  Aligned_cols=94  Identities=14%  Similarity=-0.024  Sum_probs=71.4

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CCC------------c---HHHHHHHH
Q psy4130         114 KAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------------DPH------------Y---AKAYGRMG  164 (314)
Q Consensus       114 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~lg  164 (314)
                      ..+..+|.+.+.+..++.++..+|+++.|.+.+++|+-.              ++.            |   -.+.++..
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            446789999999999999999999999999999998633              111            1   13566777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHhccc
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPN-DPLYANNMQAA-MSNLNNS  207 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~~~~  207 (314)
                      ..+.+.|.+.-|.++++-.+.++|. |+-.-...-.. ..+.+++
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y  155 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY  155 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH
Confidence            8888999999999999999999998 66543333333 3344444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.22  E-value=1.7  Score=37.11  Aligned_cols=152  Identities=20%  Similarity=0.102  Sum_probs=102.8

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc-----hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY-----KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ...+..+|+++|+.+.+..-   ....+.++.+|....     ...+..|+...........   ....+.+|..+..-.
T Consensus        89 v~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~  162 (292)
T COG0790          89 VSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGL  162 (292)
T ss_pred             ccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcCh
Confidence            35568899999997766544   445667777666532     1122333222211111100   233677777776531


Q ss_pred             -------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-
Q psy4130         104 -------KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-  171 (314)
Q Consensus       104 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-  171 (314)
                             +...|+..|.++....  ++.+...+|.+|..    ..++.+|..+|.++.+...  ..+.+.++ +++..| 
T Consensus       163 ~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~  237 (292)
T COG0790         163 QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE  237 (292)
T ss_pred             hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence                   3347999999988775  78889999988865    3589999999999999887  88999999 777666 


Q ss_pred             --------------CHHHHHHHHHHHHhhCCCCH
Q psy4130         172 --------------DYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       172 --------------~~~~A~~~~~~al~~~p~~~  191 (314)
                                    +...|...+.++....+...
T Consensus       238 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         238 GVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             CchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence                          77788888888777665543

>KOG2300|consensus

Probab=95.17  E-value=0.57  Score=42.26  Aligned_cols=123  Identities=19%  Similarity=0.082  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC---CCc---
Q psy4130          89 AEKYKNLGNTAMQQD--KPEQAVIEYSKAIDCDNSN---PVYYCNRAASN-NKLKNYKLALRDCQIAIKID---PHY---  156 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~---p~~---  156 (314)
                      +.++..+|..+...+  +...++.+++..+...|.+   +..+..+|.++ ...++++.|..++++|..+.   |..   
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv   86 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV   86 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence            346677777777777  7888888888777766553   34556666654 46788888888888888764   332   


Q ss_pred             -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcccccCC
Q psy4130         157 -AKAYGRMGLAYTQMN-DYKAALEAYTKAAELDPNDPL----YANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 -~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~  211 (314)
                       ..++..|+.+|.... .+..|...+++++++..+.+.    ..+.|+.++.-..++..|.
T Consensus        87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~  147 (629)
T KOG2300|consen   87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSAL  147 (629)
T ss_pred             hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHH
Confidence             256677788877766 777888888888888776653    3456666666667776664

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.13  E-value=0.14  Score=35.63  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=26.7

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130         100 MQQDKPEQAVIEYSKAIDCDNSN---------PVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus       100 ~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      .+.++|.+|++.+.+.+......         ..+..++|.++...|++++|+..+++++++
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45566666666665555432111         223444555555555555555555555544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.01  E-value=0.17  Score=36.16  Aligned_cols=83  Identities=14%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q psy4130         129 RAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMND-----------YKAALEAYTKAAELDPNDPLYA  194 (314)
Q Consensus       129 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~  194 (314)
                      +|.-++..|++-+|++..+..+..++++.   ..+..-|.++..+..           .-.++++|.++..+.|.....+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46678899999999999999999998876   455566777765442           3468999999999999998888


Q ss_pred             HHHHHHHHHhcccccCC
Q psy4130         195 NNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       195 ~~l~~~~~~~~~~~~A~  211 (314)
                      +.++.-+.....|+++.
T Consensus        82 ~~la~~l~s~~~Ykk~v   98 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAV   98 (111)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            88777655555555553

>KOG1310|consensus

Probab=94.98  E-value=0.089  Score=47.70  Aligned_cols=77  Identities=18%  Similarity=0.060  Sum_probs=68.8

Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ....+..|+..|.+++...|.....+.+.+.++++.+   +.-.|+..+..+++++|....+++.|+.++..++++.+|.
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            3456788999999999999999999999999988754   6667788888899999999999999999999999999997

>KOG1914|consensus

Probab=94.96  E-value=3  Score=38.43  Aligned_cols=97  Identities=9%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130          79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  158 (314)
                      .+.++.+|.+..+|+.+-.-+..+ .+++..+.|++.+...|..+.+|.....-....++|+.....|.+++...-+ .+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            344567788888888888777766 8899999999999999999999888888888888999999888888865322 34


Q ss_pred             HHHH-HHHHHHHcCCHHHHH
Q psy4130         159 AYGR-MGLAYTQMNDYKAAL  177 (314)
Q Consensus       159 ~~~~-lg~~~~~~g~~~~A~  177 (314)
                      .|.. |.-+-...++...+.
T Consensus        88 LW~lYl~YVR~~~~~~~~~r  107 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYR  107 (656)
T ss_pred             HHHHHHHHHHHHccCcchHH
Confidence            4332 233333344444433

>KOG4814|consensus

Probab=94.94  E-value=0.24  Score=45.98  Aligned_cols=87  Identities=23%  Similarity=0.290  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      ++.+-|.-+++..+|..++++|...+.--|.+      ++....++.||..+.+.+.|.+++.+|-+.+|.++-.....-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            45567888899999999999999999876654      477889999999999999999999999999999988888877


Q ss_pred             HHHHHhcccccCC
Q psy4130         199 AAMSNLNNSSSAS  211 (314)
Q Consensus       199 ~~~~~~~~~~~A~  211 (314)
                      .+...-+..++|.
T Consensus       436 ~~~~~E~~Se~AL  448 (872)
T KOG4814|consen  436 QSFLAEDKSEEAL  448 (872)
T ss_pred             HHHHHhcchHHHH
Confidence            7778888888886

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.90  E-value=0.13  Score=43.58  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       142 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      |+.+|.+|+.+.|.+...|..+|.++...|+.=.|+.+|-+++......+.+..+|..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34444445555555555555555544444444445444444444333334444444444444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2396|consensus

Probab=94.82  E-value=0.21  Score=45.10  Aligned_cols=95  Identities=11%  Similarity=-0.056  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-cccCCCCCCCcc
Q psy4130         140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN-SSSASGSGGVFP  218 (314)
Q Consensus       140 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~  218 (314)
                      ..-+..|++|....+.++..|........+.+.+.+-...|.+++..+|++++.|...+.-....+. .+.|.      .
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saR------a  161 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESAR------A  161 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHH------H
Confidence            4456788999999999999999988888888889999999999999999999999999988887776 66676      7


Q ss_pred             hHHHHHHhccCChHHHHHHHHh
Q psy4130         219 GLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       219 ~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      -+...++..+.+|.+|.-+-.+
T Consensus       162 lflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  162 LFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HHHHHhhcCCCChHHHHHHHHH
Confidence            7778888889999887654433

>KOG0529|consensus

Probab=94.77  E-value=0.5  Score=41.70  Aligned_cols=139  Identities=17%  Similarity=0.046  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN----DYKAAL  177 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~  177 (314)
                      -+++-+.+...+++.+|++..+|+.+..++.+.+  ++..=++.++++++.+|.+-.+|...=.+.....    ...+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            5677788899999999999999999999999776  4788999999999999999877766555444322    367778


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCc-------chHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVF-------PGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++..+++..++.|-.+|.....++..+-..+ +.+....-       ....+++-.-+.|+..|....-++.+
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhcccc-ccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            8999999999999999999988877543322 22110000       22223334445566677665555554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.75  E-value=1.5  Score=34.12  Aligned_cols=114  Identities=14%  Similarity=0.075  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCcHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN----PVYYCNRAASNNKLKNYKLALRDCQIAI-KIDPHYAKAYGRM  163 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l  163 (314)
                      .-+.+..|.+....|+-..|+..|.++-...|--    -.+...-+.++...|-|++-..-.+..- ..+|-...+.-.|
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            3456777888888999999999998876544321    1234455667778888887666554422 2234455677788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      |.+.++.|++.+|.++|..... +...+....+.+.+...
T Consensus       174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            9999999999999999988766 55555555666655443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.68  E-value=0.23  Score=34.61  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         133 NNKLKNYKLALRDCQIAIKIDPH---------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       133 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ..+.++|.+|++.+.+.+.....         ...+..++|.++...|++++|+..+++++.+...
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            45789999999888888876432         2367788999999999999999999999987543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.65  E-value=0.63  Score=30.96  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHccCHHHHHHHHHHHHHh
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---AASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      ......|.-++...+.++|+..++++++..++.+..+..+   ..+|...|+|.+.+.+..+-+.+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777788888888888888888777666554444   44566777777777766554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.40  E-value=0.54  Score=39.76  Aligned_cols=64  Identities=20%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ...++..++..+...++++.++..+++.+..+|.+-..|..+-.+|...|+...|+..|++.-.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3456777788888888888888888888888888888888888888888888888888877655

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.29  E-value=0.2  Score=27.94  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHH--HHHHHHcCC
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIE--YSKAIDCDN  120 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p  120 (314)
                      .++.+|..+..+|++++|+..  |+-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344555555555555555555  324444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.24  E-value=0.22  Score=42.30  Aligned_cols=62  Identities=18%  Similarity=0.040  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      |+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++....-.+.+..+|...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998765568888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.21  E-value=0.79  Score=37.38  Aligned_cols=78  Identities=17%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130          87 IEAEKYKNLGNTAMQQDKP-------EQAVIEYSKAIDCDN--S----NPVYYCNRAASNNKLKNYKLALRDCQIAIKID  153 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  153 (314)
                      ..+..+..+|..|...++-       ..|++.|.+++....  .    ...+.+.+|.++.+.|++++|+.+|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            4567788888888888874       455566666665432  2    24678899999999999999999999999865


Q ss_pred             CCcH-HHHHHHH
Q psy4130         154 PHYA-KAYGRMG  164 (314)
Q Consensus       154 p~~~-~~~~~lg  164 (314)
                      ..+. .....++
T Consensus       196 ~~s~~~~l~~~A  207 (214)
T PF09986_consen  196 KASKEPKLKDMA  207 (214)
T ss_pred             CCCCcHHHHHHH
Confidence            4333 3444444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.08  E-value=0.24  Score=27.62  Aligned_cols=30  Identities=17%  Similarity=0.141  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHH--HHHHHHhCC
Q psy4130         125 YYCNRAASNNKLKNYKLALRD--CQIAIKIDP  154 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p  154 (314)
                      .++.+|..+..+|++++|+..  |.-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344555555555555555555  224444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.99  E-value=1.8  Score=38.87  Aligned_cols=134  Identities=16%  Similarity=0.036  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      -.+...|.++.+++++.+|...|.+........+     +++.++-.-.+-+.+.+.=...+...-+..|..+......|
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~   86 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA   86 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            4577889999999999999999999887654443     33444444444556666666666666677888888888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPND---------------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      ...++.+++.+|++.+..-...-...               ...-...+.++...|++.+++      ..+......++.
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR------~iLn~i~~~llk  160 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR------AILNRIIERLLK  160 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH------HHHHHHHHHHhh
Confidence            99999999999999887655441111               112245678899999999997      555555555555

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.96  E-value=6.1  Score=37.87  Aligned_cols=107  Identities=23%  Similarity=0.076  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Q psy4130          87 IEAEKYKNLGNTAM-QQDKPEQAVIEYSKAIDCDNS--NP----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----  155 (314)
Q Consensus        87 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----  155 (314)
                      ..+...+.+|.+++ ...+++.|..++++++.+...  ..    .+.+.++.++.+.+... |...++++++....    
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            45678999999998 688999999999999887643  22    23456788888888777 99999999987654    


Q ss_pred             cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Q psy4130         156 YAKAYGRMG--LAYTQMNDYKAALEAYTKAAELD--PNDPLYA  194 (314)
Q Consensus       156 ~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~  194 (314)
                      .....+++-  ..+...+++..|++.++......  +.++.+.
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence            223333333  22323479999999999988876  3555443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.92  E-value=0.14  Score=28.93  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      +..+|.+-...++|++|+.+|++++.
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0985|consensus

Probab=93.72  E-value=2.8  Score=41.60  Aligned_cols=111  Identities=19%  Similarity=0.226  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C----------
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--P----------  154 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p----------  154 (314)
                      +.+..|..+|.+..+.+...+|++.|-++     +++..|...-.+..+.|.|++-+.++.-|-+.-  |          
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence            34678999999999999999999999665     667778888888888999999888887765542  1          


Q ss_pred             ----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         155 ----------------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       155 ----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                                      +.+. .-..|.-++..|.|+.|.-.|.        +..-|..|+..+..+|++..|.
T Consensus      1177 Akt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred             HHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence                            1111 1233444444555555554443        2334566777777777777665

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.69  E-value=0.14  Score=28.92  Aligned_cols=30  Identities=27%  Similarity=0.506  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELD  187 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (314)
                      +.+..||.+-...++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.57  E-value=0.12  Score=26.34  Aligned_cols=17  Identities=18%  Similarity=-0.146  Sum_probs=6.6

Q ss_pred             HHHHHHHHccCHHHHHH
Q psy4130         128 NRAASNNKLKNYKLALR  144 (314)
Q Consensus       128 ~la~~~~~~~~~~~A~~  144 (314)
                      .+|.++...|++++|..
T Consensus         6 ~la~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    6 ALARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            33333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.46  E-value=0.85  Score=38.60  Aligned_cols=66  Identities=11%  Similarity=0.091  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      ....++..++..+...++++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345567788899999999999999999999999999999999999999999999999999988764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.29  E-value=0.74  Score=36.32  Aligned_cols=89  Identities=13%  Similarity=-0.059  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----H
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPL----Y  193 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~  193 (314)
                      ..++..+|..|.+.|++++|+++|.++.......   ...++.+-.+....+++.....++.++-.+-..  +..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3578899999999999999999999988865442   367788888899999999999999988775332  322    2


Q ss_pred             HHHHHHHHHHhcccccCC
Q psy4130         194 ANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       194 ~~~l~~~~~~~~~~~~A~  211 (314)
                      ...-|..+...+++.+|.
T Consensus       116 k~~~gL~~l~~r~f~~AA  133 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAA  133 (177)
T ss_pred             HHHHHHHHHHhchHHHHH
Confidence            334455566677777775

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.12  E-value=0.14  Score=26.07  Aligned_cols=24  Identities=17%  Similarity=0.008  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .+.+.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.01  E-value=0.38  Score=38.37  Aligned_cols=78  Identities=8%  Similarity=0.068  Sum_probs=57.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCC
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMND  172 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~  172 (314)
                      +..+..-+.|...|-++- -.|  +.+...+.+|..|. ..+.++++..+-+++++.+.    +++.+..|+.++..+|+
T Consensus       116 ~Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HhhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            444444456666665432 222  46778888887766 67899999999999998654    57899999999999999


Q ss_pred             HHHHHH
Q psy4130         173 YKAALE  178 (314)
Q Consensus       173 ~~~A~~  178 (314)
                      ++.|.-
T Consensus       194 ~e~AYi  199 (203)
T PF11207_consen  194 YEQAYI  199 (203)
T ss_pred             hhhhhh
Confidence            998853

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.92  E-value=0.86  Score=45.36  Aligned_cols=99  Identities=12%  Similarity=0.108  Sum_probs=77.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKL----K---NYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ...+++...+.|+.|+..|++.-.-.|...   ++.+..|.....+    +   .+++|+..|++.- -.|.-+--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            345677888999999999999999888754   5667777777654    2   4666666666543 345666777888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      |.+|..+|++++-+++|.-|++..|..|.+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            889999999999999999999999988754

>KOG2422|consensus

Probab=92.79  E-value=3.8  Score=38.01  Aligned_cols=129  Identities=15%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ....+++|...|.-++...+   .+-.                       .......|.+.+.+..++.++..+|+.+-|
T Consensus       250 hs~sYeqaq~~F~~av~~~d---~n~v-----------------------~~lL~ssPYHvdsLLqva~~~r~qgD~e~a  303 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHD---PNNV-----------------------LILLISSPYHVDSLLQVADIFRFQGDREMA  303 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcC---Ccce-----------------------eeeeccCCcchhHHHHHHHHHHHhcchhhH
Confidence            35567788887777776655   2211                       111334578889999999999999999999


Q ss_pred             HHHHHHHHHc---------------------CCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHH
Q psy4130         109 VIEYSKAIDC---------------------DNSNPVYY---CNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRM  163 (314)
Q Consensus       109 ~~~~~~al~~---------------------~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l  163 (314)
                      ....+++|-.                     .|.+-..|   +..-.-+.+.|.+..|..+++-.++++|. ++.+...+
T Consensus       304 adLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~  383 (665)
T KOG2422|consen  304 ADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYL  383 (665)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHH
Confidence            8888887732                     12232222   22233455679999999999999999998 87666555


Q ss_pred             HHHH-HHcCCHHHHHHHHHHH
Q psy4130         164 GLAY-TQMNDYKAALEAYTKA  183 (314)
Q Consensus       164 g~~~-~~~g~~~~A~~~~~~a  183 (314)
                      -.+| ....+|+--+..++..
T Consensus       384 ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  384 IDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            5554 4566777766666654

>KOG0529|consensus

Probab=92.72  E-value=6.9  Score=34.83  Aligned_cols=149  Identities=11%  Similarity=0.065  Sum_probs=101.4

Q ss_pred             HHHHhcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          97 NTAMQQDKP-EQAVIEYSKAIDCDNSNPVYYCNRAASNNKL------------KNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        97 ~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ......+.+ .++++.=.+.+..+|+...+|..+=.++...            .-+++-+.....+++.+|++..+|+.+
T Consensus        36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR  115 (421)
T KOG0529|consen   36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR  115 (421)
T ss_pred             HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence            334445555 4556666677788888877776554444322            235667788889999999999999999


Q ss_pred             HHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc-CCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         164 GLAYTQMND--YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS-ASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       164 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      ..++.+.+.  +..=++.++++++.+|.|-.+|...-.+......... +.   +.+.--.+++...+.|-..|..-..+
T Consensus       116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~---~El~ftt~~I~~nfSNYsaWhyRs~l  192 (421)
T KOG0529|consen  116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK---EELEFTTKLINDNFSNYSAWHYRSLL  192 (421)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch---hHHHHHHHHHhccchhhhHHHHHHHH
Confidence            999998764  6888999999999999998888777666665544411 11   00022234445555666788887777


Q ss_pred             hcCCCCCC
Q psy4130         241 FANPGQQA  248 (314)
Q Consensus       241 ~~~~~~~~  248 (314)
                      +....+..
T Consensus       193 L~~l~~~~  200 (421)
T KOG0529|consen  193 LSTLHPKE  200 (421)
T ss_pred             HHHhcccc
Confidence            77655433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.53  E-value=3.3  Score=41.38  Aligned_cols=126  Identities=17%  Similarity=0.118  Sum_probs=84.3

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh-------c
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ-------Q  102 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~  102 (314)
                      -..++.|+..|++.-...|.-.+.                                   .++.+..|.+...       .
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~  532 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEG-----------------------------------YEAQFRLGITLLEKASEQGDP  532 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccc-----------------------------------hHHHHHhhHHHHHHHHhcCCh
Confidence            345788888888877777733222                                   2244444444432       1


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHcCCHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY-------GRMGLAYTQMNDYKA  175 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~lg~~~~~~g~~~~  175 (314)
                      ..+++|+..|++. .-.|.-|--|...|.+|..+++|++-++++.-|++..|.++..-       +++=.+.+.  +-..
T Consensus       533 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  609 (932)
T PRK13184        533 RDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRRE  609 (932)
T ss_pred             HHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHH
Confidence            3578888888764 44566677789999999999999999999999999999987543       333333332  2345


Q ss_pred             HHHHHHHHHhhCCCCHHH
Q psy4130         176 ALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       176 A~~~~~~al~~~p~~~~~  193 (314)
                      |....--++..-|.....
T Consensus       610 ~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        610 ALVFMLLALWIAPEKISS  627 (932)
T ss_pred             HHHHHHHHHHhCcccccc
Confidence            556666677778875443

>KOG4151|consensus

Probab=92.33  E-value=0.97  Score=43.15  Aligned_cols=123  Identities=22%  Similarity=0.293  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKL--KNYKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      .+.....-|+.++..+++..+-.-|..++.+-|.    .+....+.+.|+..+  ++|.+++..+.-++...|....++.
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            3445667788999999999998888888888774    345677888887754  7999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      ..+.+|...++++-|++.+.-....+|.+..+..-...++.-....+.+
T Consensus       132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~  180 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA  180 (748)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence            9999999999999999998888889999866555444444444333333

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.24  E-value=0.48  Score=41.93  Aligned_cols=82  Identities=20%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC--------C-----cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130         130 AASNNKLKNYKLALRDCQIAIKIDP--------H-----YA-----KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       130 a~~~~~~~~~~~A~~~~~~al~~~p--------~-----~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  191 (314)
                      |..++++++|..|.--|..++++..        .     +.     .+-..|..||..+++.+-|+..-.+.+-++|.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4445566677777666666666532        1     11     2345789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCC
Q psy4130         192 LYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .-+..-+.|...+.+|.+|.
T Consensus       263 rnHLrqAavfR~LeRy~eAa  282 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAA  282 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986

>KOG1914|consensus

Probab=92.17  E-value=9.7  Score=35.25  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=36.5

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      .-.+..-...|...|.+|-+..-....++..-|.. |...++.+-|...|+-.++..++.+..-......+..+++-..+
T Consensus       375 ~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~  454 (656)
T KOG1914|consen  375 FIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA  454 (656)
T ss_pred             HHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence            33333444445555555443322211222222221 33455555555555555555555555555555555555555555


Q ss_pred             C
Q psy4130         211 S  211 (314)
Q Consensus       211 ~  211 (314)
                      .
T Consensus       455 R  455 (656)
T KOG1914|consen  455 R  455 (656)
T ss_pred             H
Confidence            3

>KOG2581|consensus

Probab=91.83  E-value=5.7  Score=35.28  Aligned_cols=127  Identities=16%  Similarity=0.046  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DN-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKID----  153 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----  153 (314)
                      .+--.+..|+.+..++...++...-...+...+..     +. ..+...+.+=.+|...+.|+.|.....+..--+    
T Consensus       164 lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~sn  243 (493)
T KOG2581|consen  164 LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASN  243 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcccccc
Confidence            34445677888888888888866555554444432     11 223445566678888899999998887776322    


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcccccC
Q psy4130         154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL------YANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A  210 (314)
                      ...+...+.+|.+..-+++|..|.+++-.|+...|.+..      +...+..+..-+|++++-
T Consensus       244 ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPer  306 (493)
T KOG2581|consen  244 NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPER  306 (493)
T ss_pred             HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcch
Confidence            134577889999999999999999999999999997532      344455556667877753

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.59  E-value=1.6  Score=39.46  Aligned_cols=97  Identities=11%  Similarity=0.054  Sum_probs=48.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      ...+.+....|+|+.+...+.-+-..-..-..+...+-.-...++++++|.....-.+.-.-.+++....-+.....+|-
T Consensus       327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~  406 (831)
T PRK15180        327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQL  406 (831)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhH
Confidence            33445555555565555554333222111122222333344455566666655555555444455555444455555555


Q ss_pred             HHHHHHHHHHHHhhCCC
Q psy4130         173 YKAALEAYTKAAELDPN  189 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~  189 (314)
                      ++++.-++++.+.++|.
T Consensus       407 ~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        407 FDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHHHHHhccCCh
Confidence            66666666666666554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.53  E-value=1.5  Score=35.56  Aligned_cols=58  Identities=21%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       133 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      +.+.+...+|+...+.-++.+|.+......+-.+++-.|+|++|...++-+-.+.|++
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            3344555555555555555555555555555555555555555555555555555544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.33  E-value=0.93  Score=40.97  Aligned_cols=96  Identities=15%  Similarity=0.062  Sum_probs=76.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE  178 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  178 (314)
                      ....|+.-.|-.-...+++..|..|......+.+...+|+|+.+.+.+.-+-..-..-..+...+-..+..+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            34578999999999999999999999889999999999999999998877766544445556666677888999999998


Q ss_pred             HHHHHHhhCCCCHHHH
Q psy4130         179 AYTKAAELDPNDPLYA  194 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~  194 (314)
                      .-.-.+.-.-+++++.
T Consensus       379 ~a~~~l~~eie~~ei~  394 (831)
T PRK15180        379 TAEMMLSNEIEDEEVL  394 (831)
T ss_pred             HHHHHhccccCChhhe
Confidence            8777766554555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.29  E-value=1  Score=38.10  Aligned_cols=49  Identities=22%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .+..|...|.+.+|++..++++.++|-+...+..+..++..+|+.-.+.
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~  333 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAI  333 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence            3444445555555555555555555555555555555555555544444

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.22  E-value=0.67  Score=24.39  Aligned_cols=28  Identities=21%  Similarity=0.144  Sum_probs=16.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130         172 DYKAALEAYTKAAELDPNDPLYANNMQA  199 (314)
Q Consensus       172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~  199 (314)
                      +++.|...|++++...|.++.+|..+..
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4555566666666666655555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.10  E-value=4.1  Score=32.62  Aligned_cols=72  Identities=19%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcccccCC
Q psy4130         139 YKLALRDCQIAIKID-PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN----DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       139 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      -++|...|-++-... -+++...+.||..|. ..+.++|+..+.+++++.+.    ++++...|+.++..+++++.|-
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            345666665443322 246788888887766 67899999999999998654    5899999999999999999874

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.77  E-value=3  Score=27.82  Aligned_cols=56  Identities=11%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM---GLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~~~~A~~~~~~  182 (314)
                      ...|.=++...+..+|+..++++++..++....+..+   ..++...|+|++.+.+-.+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555677888999999999999988877655544   4567788888887766544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3807|consensus

Probab=90.13  E-value=6.6  Score=34.03  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP-----------------  154 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------  154 (314)
                      -+.+-....+..+..+-++.-..+++++|..+.+|..++.-  ..--..+|...+++|++...                 
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d  264 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE  264 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence            44455666777888888999999999999999988877642  23345566677776665411                 


Q ss_pred             ------CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         155 ------HYA--KAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       155 ------~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                            .++  ..-.+|+.|..++|+..+|++.++...+-.|-
T Consensus       265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl  307 (556)
T KOG3807|consen  265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL  307 (556)
T ss_pred             hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence                  111  33457899999999999999999988877663

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.78  E-value=22  Score=35.05  Aligned_cols=120  Identities=11%  Similarity=-0.027  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY  156 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  156 (314)
                      ..++......+.......++.+|.....++...-+.         .+......|.+....+++++|++..+.++..-|.+
T Consensus       412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~  491 (894)
T COG2909         412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA  491 (894)
T ss_pred             hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence            345666777788888999999999998887764332         12445567888889999999999999999987764


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHH--HHHHHHHHHHhc
Q psy4130         157 -----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN----DPLY--ANNMQAAMSNLN  205 (314)
Q Consensus       157 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~--~~~l~~~~~~~~  205 (314)
                           ..++..+|.+..-.|++++|..+...+.++...    .-.+  ....+.++..+|
T Consensus       492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence                 367888999999999999999999988887432    2223  333456666777

>KOG2041|consensus

Probab=89.42  E-value=2.7  Score=39.95  Aligned_cols=137  Identities=15%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH----------HHHHHHHHHccCHHHHHHHHHHHHH-----
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY----------CNRAASNNKLKNYKLALRDCQIAIK-----  151 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~~~~~~A~~~~~~al~-----  151 (314)
                      .+++.|..++......-.++.|...|-+.-.. |.- ...          ...|.+-.--|+|++|.+.|-.+-+     
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAi  767 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAI  767 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhH
Confidence            45778888888888777777776666443221 110 011          1233333334667777666543211     


Q ss_pred             -h-------------------CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130         152 -I-------------------DPH---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS  208 (314)
Q Consensus       152 -~-------------------~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  208 (314)
                       +                   +.+   -..++.++|..+..+-.|++|.++|.++-.        ..++..|+..+..++
T Consensus       768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~  839 (1189)
T KOG2041|consen  768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFG  839 (1189)
T ss_pred             HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhh
Confidence             1                   111   236888899999999999999999886532        345667777777774


Q ss_pred             cCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         209 SASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       209 ~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +          +...+..++.|.++...++.++..
T Consensus       840 ~----------LE~la~~Lpe~s~llp~~a~mf~s  864 (1189)
T KOG2041|consen  840 E----------LEVLARTLPEDSELLPVMADMFTS  864 (1189)
T ss_pred             h----------HHHHHHhcCcccchHHHHHHHHHh
Confidence            4          357778888887776666666554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.37  E-value=10  Score=37.22  Aligned_cols=65  Identities=18%  Similarity=-0.022  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN-----PVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      .+...-..|.+....+++++|++..+.++..-|.+     ..++..+|.+..-.|++++|..+...+.+.
T Consensus       457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            34445556667777777777777777777765543     235566777777777777777777776665

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.79  E-value=1.5  Score=22.91  Aligned_cols=26  Identities=15%  Similarity=0.103  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNR  129 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~l  129 (314)
                      +++.+...|++++...|.++.+|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.44  E-value=4.2  Score=34.54  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ....+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.+++.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3444556666677777777777777777777777777777777777766666665553

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.22  E-value=1.1  Score=40.08  Aligned_cols=27  Identities=22%  Similarity=0.531  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      ..++.+|.+|..+++|.+|+..|...+
T Consensus       165 s~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  165 STYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555443

>KOG0890|consensus

Probab=88.11  E-value=8.8  Score=41.71  Aligned_cols=119  Identities=14%  Similarity=-0.003  Sum_probs=93.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------  156 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------  156 (314)
                      ..+....+.|...|.+....|.++.|....-+|.+..  -+.++..+|..+...|+...|+..+++.+..+-.+      
T Consensus      1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred             cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence            3455678899999999999999999999998888776  57788999999999999999999999999775222      


Q ss_pred             -----------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         157 -----------AKAYGRMGLAYTQMNDY--KAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       157 -----------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                                 ..+...++......+++  .+-++.|..+.+..|....-++.+|.-+.+
T Consensus      1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence                       12445555666666664  355789999999999877777777755444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.98  E-value=11  Score=29.50  Aligned_cols=120  Identities=10%  Similarity=-0.023  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHH
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----AKAYGRMGL  165 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~  165 (314)
                      -+..+.-+...+..++|+..|...-+..-..  .-+....|.+..+.|+-..|+..|..+-.-.|--    ..+..+-+.
T Consensus        61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~  140 (221)
T COG4649          61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY  140 (221)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence            3444556677889999999998766654332  2345677888899999999999999987665431    245566677


Q ss_pred             HHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         166 AYTQMNDYKAALEAYTKAA-ELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++...|.|++-..-.+..- .-+|-...+...|+....+.|++.+|.
T Consensus       141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~  187 (221)
T COG4649         141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK  187 (221)
T ss_pred             HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH
Confidence            8889999998766555322 234545678899999999999999997

>KOG1839|consensus

Probab=87.90  E-value=2.5  Score=42.88  Aligned_cols=127  Identities=19%  Similarity=0.196  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI---  152 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---  152 (314)
                      ..+.....+..++..+...+++++|+..-.++.-.        .|+....+.+++...+..++...|+..+.++..+   
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            45667788889999999999999999887776643        2445567888888888888999999999988876   


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcccccC
Q psy4130         153 -----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--------DPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       153 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A  210 (314)
                           .|.-+....+++.++...++++-|+.+.+.|++.+-.        ....+..++.++...+++..|
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH
Confidence                 3555566778888888889999999999999885432        223444455555555444443

>KOG1839|consensus

Probab=87.77  E-value=2.3  Score=43.08  Aligned_cols=125  Identities=21%  Similarity=0.226  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHH------HHHHH-HHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVI------EYSKA-IDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------  153 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------  153 (314)
                      ..+......|......+.+.+|.+      .+.+. -.+.|..+..|..++.++...+++++|+....++.-+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            345556777878888888888877      44422 23578888999999999999999999999999887663      


Q ss_pred             --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         154 --PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL--------DPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       154 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                        |+....+.+++...+..+....|...+.++..+        .|.-.....++..++..+++++.|.
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence              456688999999999999999999999888775        3444555678888888888888775

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.35  E-value=3.4  Score=31.18  Aligned_cols=53  Identities=19%  Similarity=0.108  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      +.....+...+..|++..|....+.++..+|++..+...++.++..+|...+.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            33344444455555566666666666666666666655556655555544443

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=87.14  E-value=7  Score=28.83  Aligned_cols=44  Identities=18%  Similarity=0.109  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130         107 QAVIEYSKAID--CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus       107 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      .+.+.|.....  +.-..+..|...|..+...|++.+|...|+.+|
T Consensus        81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            55555555544  234456666666777777777777777776654

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.10  E-value=1.6  Score=25.54  Aligned_cols=25  Identities=12%  Similarity=-0.017  Sum_probs=15.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      +.+|.+|..+|+++.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3456666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2422|consensus

Probab=86.65  E-value=11  Score=35.22  Aligned_cols=94  Identities=20%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             hcCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC---------
Q psy4130         101 QQDKPEQAVIEYSKAIDC------------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DP---------  154 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p---------  154 (314)
                      ....|++|...|.-+...            .|.+.+.+..++.+...+|+.+-|....++++-.     .|         
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            355688888888877764            3556778899999999999999988888887743     12         


Q ss_pred             -------CcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHH
Q psy4130         155 -------HYA---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-DPLYA  194 (314)
Q Consensus       155 -------~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~  194 (314)
                             .+-   .++++.-..+.+.|.+.-|.++++-.+.++|. +|-+.
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~  380 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI  380 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence                   221   23444455667789999999999999999998 66443

>KOG1258|consensus

Probab=86.40  E-value=10  Score=35.42  Aligned_cols=126  Identities=9%  Similarity=0.009  Sum_probs=97.0

Q ss_pred             hcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130         101 QQDKPEQAVIEYSKAIDC-----DNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      ......+.+-.++..++.     .|.   +...|......-...|+++...-.+++++--.....+.|.+.+......|+
T Consensus       267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD  346 (577)
T ss_pred             hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence            344455555556665542     222   234566666777789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         173 YKAALEAYTKAAEL-DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       173 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ..-|...+.++.++ .|..+.+...-+......|++..|.      ..+.......|+.-+
T Consensus       347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~------~~lq~i~~e~pg~v~  401 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK------VILQRIESEYPGLVE  401 (577)
T ss_pred             hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH------HHHHHHHhhCCchhh
Confidence            99999999998886 4566777888888888899999997      666666666655433

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.17  E-value=4  Score=30.77  Aligned_cols=47  Identities=15%  Similarity=0.019  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK  137 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  137 (314)
                      .....+...+..|+|.-|....+.++..+|++..+...++.++..+|
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666666555554

>KOG1464|consensus

Probab=85.93  E-value=19  Score=30.45  Aligned_cols=95  Identities=12%  Similarity=0.019  Sum_probs=58.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDPHY------------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPL  192 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~  192 (314)
                      ..+|.+|+..++|.+-.+.+.+.-..+...            .+.|-.--..|..+++-..-...|++++.+..-  +|.
T Consensus       149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl  228 (440)
T KOG1464|consen  149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL  228 (440)
T ss_pred             chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence            358899999998888777777665543221            133444445666777777777788888876543  232


Q ss_pred             HHHHH----HHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         193 YANNM----QAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       193 ~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      +.-.+    |..+.+-|++++|.      ..+.++.+..
T Consensus       229 ImGvIRECGGKMHlreg~fe~Ah------TDFFEAFKNY  261 (440)
T KOG1464|consen  229 IMGVIRECGGKMHLREGEFEKAH------TDFFEAFKNY  261 (440)
T ss_pred             HHhHHHHcCCccccccchHHHHH------hHHHHHHhcc
Confidence            22222    33455667777776      5555555544

>KOG2041|consensus

Probab=85.78  E-value=11  Score=36.15  Aligned_cols=87  Identities=20%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .+.....++.++|..+.....|++|.++|.+.-.        ..+...|+.....|++-.    .....-|++...+-.+
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~  858 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVM  858 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHH
Confidence            4455667899999999999999999999976522        234556666666665433    3333346666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q psy4130         164 GLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~  182 (314)
                      |..+...|--++|.++|-+
T Consensus       859 a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  859 ADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHhhchHHHHHHHHHh
Confidence            6666666666666665543

>KOG0546|consensus

Probab=85.73  E-value=0.87  Score=39.43  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      ....+++.+-++.+.+..|+..-..+++.++....+++.++..+....++++|++++..+....|.+....-.+..+-..
T Consensus       276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            34555888889999999999998888889999999999999999999999999999999999999988766555544433

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.37  E-value=2.3  Score=24.88  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      +.|+.+|...|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6789999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=84.68  E-value=5.9  Score=28.93  Aligned_cols=28  Identities=21%  Similarity=0.472  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDC  118 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~  118 (314)
                      -+..+|+..++.+++-.++-+|++|+.+
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~   30 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSL   30 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence            3567888888999999999999998875

>KOG0985|consensus

Probab=84.68  E-value=29  Score=35.02  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------------CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDP-------------------------HYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      -|..++..+..+|+|..|+...++|-....                         -+++-+-.+...|...|-|++-+..
T Consensus      1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence            456678888888888888888887654310                         0122234556667778888888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      ++.++.+..-+-.....|+.+|.+-
T Consensus      1302 ~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1302 LEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHhhhchhHHHHHHHHHHHHHHHhc
Confidence            8888877766666666677766553

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=84.59  E-value=8.8  Score=28.28  Aligned_cols=26  Identities=23%  Similarity=0.142  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQ  147 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~  147 (314)
                      .+..|...|..+...|++.+|...|+
T Consensus        98 ~AlfYe~~A~~lE~~g~~~~A~~iy~  123 (125)
T smart00777       98 LALFYEEWAQLLEAAGRYKKADEVYQ  123 (125)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34445555555666666666665554

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.35  E-value=21  Score=29.18  Aligned_cols=61  Identities=8%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130          97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA  157 (314)
Q Consensus        97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  157 (314)
                      ..+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|.+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            4567789999999999999999999999999999999999999999999999999999875

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.01  E-value=9.6  Score=25.21  Aligned_cols=29  Identities=34%  Similarity=0.476  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID  117 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~  117 (314)
                      +..+...|.-+-+.|++.+|+.+|+++++
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34455566666666666666666665554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3616|consensus

Probab=83.78  E-value=28  Score=33.74  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=57.2

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         100 MQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       100 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      ....+|.+|+..++..-... .-...|-..+.-|...|+|+-|...|.++=..        ..--..|-+.|+|++|.+.
T Consensus       743 i~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHH
Confidence            34455566655555433221 22234555667777778888887777654321        1112345567777777666


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHHhcccccCC
Q psy4130         180 YTKAAELDPND-PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       180 ~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      -.++.  .|.. ...|...+.-+...|++.+|.
T Consensus       814 a~e~~--~~e~t~~~yiakaedldehgkf~eae  844 (1636)
T KOG3616|consen  814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAE  844 (1636)
T ss_pred             HHHhc--CchhHHHHHHHhHHhHHhhcchhhhh
Confidence            55543  3333 234555566667788888875

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=83.72  E-value=13  Score=30.56  Aligned_cols=54  Identities=9%  Similarity=0.014  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhccccCC-----------CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH
Q psy4130           7 DIITSVITFLRKELLRDTL-----------NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES   60 (314)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~   60 (314)
                      ++.-.+..|+...+..+.-           =..+.|+++.|++....+|+.+-.-|+.....+..
T Consensus        62 elLP~Y~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t  126 (230)
T PHA02537         62 DLLPKYLPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLAN  126 (230)
T ss_pred             HHCcchHHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchH
Confidence            3445678888887654331           12348999999999999998775444543433333

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.55  E-value=13  Score=31.09  Aligned_cols=58  Identities=16%  Similarity=0.080  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      +...+|.-|+..|+|++|++.|+.+......      .......+-.|+...|+.+..+.+.-+
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3445666667777777777777766544221      124455556666666666665554433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=82.46  E-value=12  Score=32.50  Aligned_cols=94  Identities=17%  Similarity=0.034  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      +|..-...|+-.....| ++.+-.|++.+.....-.+.++...+.....  =..+..++...|..+.++|+.++|...|+
T Consensus       311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            44444444444444443 3455567777777766677777776665543  12344566778999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHH
Q psy4130         182 KAAELDPNDPLYANNMQ  198 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~  198 (314)
                      +++.+.++..+..+...
T Consensus       390 rAi~La~~~aer~~l~~  406 (415)
T COG4941         390 RAIALARNAAERAFLRQ  406 (415)
T ss_pred             HHHHhcCChHHHHHHHH
Confidence            99999888766544443

>PF12854 PPR_1: PPR repeat

Probab=82.15  E-value=4.6  Score=21.87  Aligned_cols=26  Identities=15%  Similarity=0.290  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      ...|..+-..+.+.|+.++|++.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            44455555556666666666655543

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=81.52  E-value=5.5  Score=35.77  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDN---------SNPVYYCNRAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      ...+.+++.-.|||..|++.++.. .++.         -+...++..|.+|+-+++|.+|+..|...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556777899999999987642 3322         2345788999999999999999999999874

>KOG0686|consensus

Probab=81.47  E-value=13  Score=33.23  Aligned_cols=97  Identities=22%  Similarity=0.141  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C----Cc
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKID----P----HY  156 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~  156 (314)
                      .-.++..+|..|..-|+++.|++.|-++-..+..   ....|.++-.+-..+++|..-..+..+|.+.-    .    -.
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            3567889999999999999999999996655433   23467777778888999999888888887652    0    12


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +.....-|.+...+++|..|..+|-.+.
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3456667778888889999998887654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=81.17  E-value=37  Score=30.99  Aligned_cols=121  Identities=9%  Similarity=-0.049  Sum_probs=84.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      +.++|.+...|+.+-..+..++.+++-.+.|++...-.|-.+.+|...-.--...++|......|.+++...-. ...|.
T Consensus        35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~  113 (660)
T COG5107          35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM  113 (660)
T ss_pred             hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence            55778889999999999999999999999999999988888888765544444568899999999999876433 44443


Q ss_pred             HHHHHHHH-c----C----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         162 RMGLAYTQ-M----N----DYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       162 ~lg~~~~~-~----g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      ..-..-.+ .    |    ..-+|.+..-.++-.+|.....|...+..+..
T Consensus       114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~  164 (660)
T COG5107         114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY  164 (660)
T ss_pred             HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence            32221111 1    1    12233333333444678888888887776654

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.93  E-value=11  Score=31.42  Aligned_cols=62  Identities=6%  Similarity=-0.050  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      ......+|..|+..|+|++|+..|+.+......      ...+...+..|+...|+.+..+...-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            445668999999999999999999999765432      23466778889999999998888776554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-23
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		5e-15
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-12
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		9e-12
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-10
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-09
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-09
1wao_1	477	Pp5 Structure Length = 477		8e-09
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		6e-08
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		6e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-07
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		3e-07
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		1e-06
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		5e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		8e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-05
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		1e-05
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		3e-05
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-04
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		3e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		5e-04

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 76/112 (67%)
Query: 82  TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL 141
           +EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+CNRAA+ +KL NY  
Sbjct: 5   SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
           A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELDP++  Y
Sbjct: 65  AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           E++K K+ GN AM + +  +A+  Y++A+    +NP+Y  NRAA+ +    ++ A  D +
Sbjct: 10  ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           +A  +DP Y+KA+ R+GLA   M DYK A EAY K  E + N
Sbjct: 70  LATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 63/102 (61%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE +KNLGN   +Q   ++A+  Y KA++ D +N   + N   +  K  +Y+ A+   Q 
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+++DP+ AKA+ R G AY +  DY+ A+E Y KA ELDPN+
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
           KN GN   Q+    QA+  Y++AI  +  +   Y NRAA   KL  ++LAL+DC+  I++
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           +P + K Y R   A   M DY  A++ Y KA +LD +
Sbjct: 80  EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++ D +N   + N   +  K  +Y  A+   Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+++DP+ A+A+  +G AY +  DY  A+E Y KA ELDPN+
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++ D  +   + N   +  K  +Y  A+   Q 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
           A+++DP  A+A+  +G AY +  DY  A+E Y KA ELDP
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A++ KN GN   ++     A+  Y++A+  D  N + Y NRAA   KL  ++ AL DC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
            I++D  + K Y R       M ++  A  AY  A ++DP++
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            AE+ K   N   +    E A+  YS+AI+ + SN +YY NR+ +  + + Y  AL D  
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
            AI++D  Y K Y R   +   +  ++AAL  Y    ++ P+D
Sbjct: 65  RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 81  PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
           P +     AE+ K   N   +    E A+  YS+AI+ + SN +YY NR+ +  + + Y 
Sbjct: 5   PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 64
Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
            AL D   AI++D  Y K Y R   +   +  ++AAL  Y    ++ P+D
Sbjct: 65  YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++   +N   + N   +  K  +Y  A+   Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+++ P+ A+A+  +G AY +  DY  A+E Y KA EL PN+
Sbjct: 69  ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A+   NL N   +Q   E+AV  Y KA++        + N A+   +    + AL   +
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
            AI+I P +A AY  MG    +M D + AL+ YT+A +++P
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
           K+LGN A +Q   E+A + Y KAI+ D SN  +Y N+AA   + K +   ++ C+ A+++
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 153 DPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKA 183
                      AKA  R G A+ + ND   A++ + ++
Sbjct: 72  GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
           K  GN A+     + A+  YS+AI  D  N V Y NR+A+  K  +Y+ A  D    + +
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
            P + K Y R   A   +N ++ A   Y +  + + N+P
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK 174
           A+D  NS   +Y N   +  K  +Y  A+   Q A+++DP+ A+A+  +G AY +  DY 
Sbjct: 2   AMDPGNSAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 175 AALEAYTKAAELDPND 190
            A+E Y KA ELDPN+
Sbjct: 61  EAIEYYQKALELDPNN 76

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 75  SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAI-----------DCDNSN- 122
           ++++    +++ + +E  KN+GNT  +    E A+ +Y+K +           D D +  
Sbjct: 209 ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL 268
Query: 123 -PVYYC---NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
            PV      N  A   K+ +++ A+  C  A++IDP   KA  R    +  + +Y  AL 
Sbjct: 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328
Query: 179 AYTKAAELDPND 190
              KA E+ P D
Sbjct: 329 DLKKAQEIAPED 340

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
           EE ++E ++Y        + D P  AV  Y++ I     +   Y NRAA+  KL ++  A
Sbjct: 5   EEARLEGKEY------FTKSDWP-NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE----AYTKAAELD 187
           + DC  AI+ DP++ +AY R   A   + +Y +ALE    A TK AE++
Sbjct: 58  IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 77  INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
           +N    EE ++E ++Y        + D P  AV  Y++ I     +   Y NRAA+  KL
Sbjct: 134 VNPEKAEEARLEGKEY------FTKSDWP-NAVKAYTEMIKRAPEDARGYSNRAAALAKL 186
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE----AYTKAAELD 187
            ++  A+ DC  AI+ DP++ +AY R   A   + +Y +ALE    A TK AE++
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 95  LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
           LG T M    P  A+    K +  D ++   Y    ++N  +   + A+   Q AI ++ 
Sbjct: 45  LGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT 104
Query: 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
            YA AY ++GL Y  M ++  A+EAY K   + P 
Sbjct: 105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +A K K LGN A ++   + A+  Y KA + D +N  Y  N+AA   +  +Y      C+
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 148 IAIKID-------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
            AI++           AKAY R+G +Y +   YK A+  Y K+
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
           K  +Y  A+   Q A+++DP  A+A+  +G AY +  DY  A+E Y KA ELDP
Sbjct: 15  KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A++ K  GN      K  +A   Y +AI  +    VYY NRA    K++  + AL DC+ 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAAL----EAYTKAAE 185
           A+++D    KA+  +G    +M  Y  A+     AY+ A E
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +A K K LGN A ++   + A+  Y KA + D +N  Y  N+AA   +  +Y      C+
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 148 IAIKID-------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
            AI++           AKAY R+G +Y +   YK A+  Y K+
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A++ K  GN      K  +A   Y +AI  +    VYY NRA    K++  + AL DC+ 
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAAL----EAYTKAAE 185
           A+++D    KA+  +G    +M  Y  A+     AY+ A E
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-08
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-42
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-42
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-40
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-37
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-27
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-30
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-29
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-25
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-24
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-23
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-21
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-20
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-19
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-22
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-22
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-21
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-23
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-20
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-20
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-22
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-21
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-19
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-21
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-21
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-20
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-20
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-20
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-19
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-19
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-19
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-20
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-20
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-15
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-15
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-13
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-14
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-11
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-10
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	8e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	2e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	8e-04

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  150 bits (381), Expect = 9e-46
 Identities = 59/127 (46%), Positives = 83/127 (65%)

Query: 81  PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
            +EE   EAE+ K  GN  M+ +  E AV  Y KAI+ + +N VY+CNRAA+ +KL NY 
Sbjct: 4   GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63

Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
            A++DC+ AI IDP Y+KAYGRMGLA + +N +  A+  Y KA ELDP++  Y +N++ A
Sbjct: 64  GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

Query: 201 MSNLNNS 207
              L  +
Sbjct: 124 ELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + D   A+     G    ++ +++AA+  Y KA EL+P + +Y  N  AA S L N + A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  147 bits (373), Expect = 4e-44
 Identities = 35/125 (28%), Positives = 57/125 (45%)

Query: 81  PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
           P +     AE+ K   N   +    E A+  YS+AI+ + SN +YY NR+ +  + + Y 
Sbjct: 5   PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 64

Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
            AL D   AI++D  Y K Y R   +   +  ++AAL  Y    ++ P+D       Q  
Sbjct: 65  YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124

Query: 201 MSNLN 205
              + 
Sbjct: 125 NKIVK 129

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
              Y +  DY+ A++ Y++A EL+P++ +Y  N   A         A
Sbjct: 20  ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  144 bits (365), Expect = 2e-43
 Identities = 31/113 (27%), Positives = 52/113 (46%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +  + K  GN A+     + A+  YS+AI  D  N V Y NR+A+  K  +Y+ A  D  
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
             + + P + K Y R   A   +N ++ A   Y +  + + N+P     +Q  
Sbjct: 63  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           G     + +   AL+ Y++A +LDP++ +  +N  AA +   +   A
Sbjct: 11  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 57

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  144 bits (366), Expect = 2e-43
 Identities = 41/114 (35%), Positives = 60/114 (52%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A   KN GN   Q+    QA+  Y++AI  +  +   Y NRAA   KL  ++LAL+DC+
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
             I+++P + K Y R   A   M DY  A++ Y KA +LD +    A+  Q  M
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
              ++P  A      G    Q  DY  A++ YT+A + +P D    +N  A  + L    
Sbjct: 8   HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67

Query: 209 SA 210
            A
Sbjct: 68  LA 69

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  143 bits (364), Expect = 3e-43
 Identities = 33/114 (28%), Positives = 56/114 (49%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A++ KN GN   ++     A+  Y++A+  D  N + Y NRAA   KL  ++ AL DC 
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
             I++D  + K Y R       M ++  A  AY  A ++DP++      ++  +
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
              I+P  A+     G  Y +  DY  A+  Y +A + DP + +  +N  A ++ L    
Sbjct: 5   LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ 64

Query: 209 SA 210
            A
Sbjct: 65  RA 66

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  143 bits (362), Expect = 2e-42
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 81  PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
            +     E++K K+ GN AM + +  +A+  Y++A+    +NP+Y  NRAA+ +    ++
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-------- 192
            A  D ++A  +DP Y+KA+ R+GLA   M DYK A EAY K  E + N           
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122

Query: 193 --------YANNMQAAMSNLNNSSSASGSGGVFPGLSEM 223
                        +    ++++++ AS   G  P LS +
Sbjct: 123 TTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSL 161

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  141 bits (358), Expect = 2e-42
 Identities = 31/114 (27%), Positives = 53/114 (46%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
           ++AE+ +  G     +     AV  Y++ I     +   Y NRAA+  KL ++  A+ DC
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
             AI+ DP++ +AY R   A   + +Y +ALE    A   D      ++  +  
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           D+  A++AYT+  +  P D    +N  AA++ L +   A
Sbjct: 19  DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  137 bits (348), Expect = 1e-40
 Identities = 30/108 (27%), Positives = 47/108 (43%)

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
                 A++ K  GN      K  +A   Y +AI  +    VYY NRA    K++  + A
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           L DC+ A+++D    KA+  +G    +M  Y  A+    +A  L    
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 10/62 (16%), Positives = 16/62 (25%)

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
              +    A+     G        Y  A   Y +A   +P   +Y  N       +    
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 209 SA 210
            A
Sbjct: 61  QA 62

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  133 bits (337), Expect = 6e-39
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 80  SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---NSNPVYYCNRAASNNKL 136
            P        E+ +  GN   +      A+  Y++A+  D       V + NRAA + KL
Sbjct: 19  RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78

Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
           ++Y  A  +   AI+ D    KA  R   A  ++     A+    +   L+P + ++   
Sbjct: 79  EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

Query: 197 MQAAMSNLNNSSSA 210
           ++    N++  SS 
Sbjct: 139 LR----NISGPSSG 148

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  129 bits (326), Expect = 2e-37
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +A K K LGN A ++   + A+  Y KA + D +N  Y  N+AA   +  +Y      C+
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 148 IAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
            AI++           AKAY R+G +Y +   YK A+  Y K+        +     QA
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           A     +G    +  D+  AL+ Y KA ELDP +  Y  N  A      + +  
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKC 57

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  132 bits (333), Expect = 7e-37
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 9/200 (4%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A++ K  GN      K  +A   Y +AI  +    VYY NRA    K++  + AL DC+
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
            A+++D    KA+  +G    +M  Y  A+    +A  L     L   +   +   +   
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 208 SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQ 267
              +         S    ++  +  +      L A   ++       N          + 
Sbjct: 123 KRWN---------SIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173

Query: 268 IAAQLEQRNPELVEQIFQQF 287
             A +E ++ + +  + + F
Sbjct: 174 QQACIEAKHDKYMADMDELF 193

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  127 bits (320), Expect = 1e-36
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 82  TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL 141
           +  +   A   K+LGN A +Q   E+A + Y KAI+ D SN  +Y N+AA   + K +  
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 142 ALRDCQIAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
            ++ C+ A+++           AKA  R G A+ + ND   A++ + ++     +
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  120 bits (303), Expect = 2e-34
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           + EK K  GN+  +Q    +AV  Y + I     NPV Y N+A +  KL  Y  A++ CQ
Sbjct: 3   QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA-ELDPNDPLYANN 196
             ++          R  L Y ++   + A+ +      E+D     Y  +
Sbjct: 63  QGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
            +     G +  +   Y+ A+  Y +     P +P+  +N   A+  L   + A
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQA 57

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  118 bits (299), Expect = 5e-32
 Identities = 31/112 (27%), Positives = 51/112 (45%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE+ +  G     +     AV  Y++ I     +   Y NRAA+  KL ++  A+ DC  
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
           AI+ DP++ +AY R   A   + +Y +ALE    A   D      ++  +  
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  106 bits (267), Expect = 2e-27
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A+K K  GN   +  + ++A+  Y+KA +  + +  Y  NRAA+  +   Y+ A+    
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWEL-HKDITYLNNRAAAEYEKGEYETAISTLN 62

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
            A++        Y  +  ++ ++ +    L    K  E           
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 90.7 bits (226), Expect = 1e-21
 Identities = 18/123 (14%), Positives = 37/123 (30%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           ++       +   +    E+ + +       +                  ++  A++   
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
             IK  P  A+ Y     A  ++  +  A+    KA E DPN          A   +   
Sbjct: 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223

Query: 208 SSA 210
           +SA
Sbjct: 224 ASA 226

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 8/144 (5%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
            E  ++       + P+  + A     E  F        ++ Y+  I  +P +     A 
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKE-YFTKSDWPNAVKAYTEMIKRAPED-----AR 174

Query: 91  KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
            Y N      +     +A+ + +KAI+ D +    Y  +A +   +K Y  AL     A 
Sbjct: 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234

Query: 151 KIDPHYAKAYGRMGLAYTQMNDYK 174
             D           +        +
Sbjct: 235 TKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.1 bits (170), Expect = 9e-14
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 1/86 (1%)

Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
                     K + +  A+     A ++             A  +  +Y+ A+     A 
Sbjct: 7   KEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAV 65

Query: 185 ELDPNDPLYANNMQAAMSNLNNSSSA 210
           E           +  + + + N+   
Sbjct: 66  EQGREMRADYKVISKSFARIGNAYHK 91

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
              A      G  + +   +  A+E Y KA EL  +     NN  AA      
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGE 53

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  116 bits (292), Expect = 4e-30
 Identities = 22/111 (19%), Positives = 42/111 (37%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           + EK+  LG   +   +   A+ ++  A+D D  N + Y  RA     +   K AL D  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198
             I +   +  A  + G    +      A + + K  + +P++        
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  110 bits (276), Expect = 6e-28
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 90  EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----YCNRAASNNKLKNYKLALRD 145
            K        ++  +   A  +Y   +  + S   Y            +K +    A+R 
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
           C   ++++P    A      AY     Y  A++ Y  A E + ND      ++ A   L 
Sbjct: 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

Query: 206 NS 207
            S
Sbjct: 355 QS 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.4 bits (225), Expect = 7e-21
 Identities = 18/113 (15%), Positives = 43/113 (38%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           E ++ ++    A        A+    K ++    +      RA    K    + A+ D +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
            A K+     +A+ ++   Y Q+ D++ +L    +  +LD +      + +  
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE  +      +++ +P +A+ +   A    + N   +   +    +L +++L+L + + 
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213

Query: 149 AIKIDPHYAKAY------------GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA-- 194
            +K+D  + + +                    +   Y  A   Y    + +P+   Y   
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273

Query: 195 --NNMQAAMSNLNNSSSA 210
               +    S       A
Sbjct: 274 SKERICHCFSKDEKPVEA 291

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 15/134 (11%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---------------AASNNKL 136
               G+  ++Q K ++A  ++ K +  + S                       A      
Sbjct: 74  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133

Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
            +Y  A+      +++    A+        + +  + + A+     A++L  ++      
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193

Query: 197 MQAAMSNLNNSSSA 210
           +      L +   +
Sbjct: 194 ISTLYYQLGDHELS 207

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 25/177 (14%), Positives = 42/177 (23%), Gaps = 28/177 (15%)

Query: 57  DIESLFQL---YYK----DEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108
           D+E   +L           + L  +   ++  P          Y       +   K + A
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFLAMGKSKAA 56

Query: 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY-------- 160
           + + +K I            R     K      A  D +  +K +P   +          
Sbjct: 57  LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116

Query: 161 -------GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                      L      DY AA+    K  E+   D                   A
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 16/77 (20%), Positives = 22/77 (28%)

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           ++   +               AL     A+  DP    AY R    +  M   KAAL   
Sbjct: 1   ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60

Query: 181 TKAAELDPNDPLYANNM 197
           TK   L  +        
Sbjct: 61  TKVIALKMDFTAARLQR 77

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 12/83 (14%), Positives = 35/83 (42%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
            + + +   + +KP +A+   S+ +  +  N     +RA +    + Y  A++D + A +
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

Query: 152 IDPHYAKAYGRMGLAYTQMNDYK 174
            + +  +    +  A   +   +
Sbjct: 335 HNENDQQIREGLEKAQRLLKQSQ 357

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  117 bits (294), Expect = 6e-30
 Identities = 22/116 (18%), Positives = 44/116 (37%)

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
            +   + EK+  LG   +   +   A+ ++  A+D D  N + Y  RA     +   K A
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198
           L D    I++   +  A  + G    +      A + + K  + +P++        
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  108 bits (272), Expect = 6e-27
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 4/125 (3%)

Query: 90  EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----YCNRAASNNKLKNYKLALRD 145
            K        ++  +   A  +Y   +  + S   Y            +K +    A+R 
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
           C   ++++P    A      AY     Y  A++ Y  A E + ND      ++ A   L 
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

Query: 206 NSSSA 210
            S   
Sbjct: 378 QSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 18/113 (15%), Positives = 43/113 (38%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           E ++ ++    A        A+    K ++    +      RA    K    + A+ D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
            A K+     +A+ ++   Y Q+ D++ +L    +  +LD +      + +  
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 14/134 (10%), Positives = 44/134 (32%), Gaps = 15/134 (11%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC---------------NRAASNNKL 136
               G+  ++Q K ++A  ++ K +  + S                     ++A +    
Sbjct: 97  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156

Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
            +Y  A+      +++    A+        + +  + + A+     A++L  ++      
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216

Query: 197 MQAAMSNLNNSSSA 210
           +      L +   +
Sbjct: 217 ISTLYYQLGDHELS 230

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.0 bits (195), Expect = 1e-16
 Identities = 25/177 (14%), Positives = 42/177 (23%), Gaps = 28/177 (15%)

Query: 57  DIESLFQL---YYK----DEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108
           D+E   +L           + L  +   ++  P          Y       +   K + A
Sbjct: 25  DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFLAMGKSKAA 79

Query: 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG------- 161
           + + +K I            R     K      A  D +  +K +P   +          
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 162 --------RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                      L      DY AA+    K  E+   D                   A
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 18/172 (10%), Positives = 57/172 (33%), Gaps = 14/172 (8%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASN-----------VDIESLFQLYYKDEVLQWYSN-INF 79
            E+++  + +   +  D+    ++              E L +     +    Y + +  
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286

Query: 80  SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY 139
            P    +      + + +   + +KP +A+   S+ +  +  N     +RA +    + Y
Sbjct: 287 EP-SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345

Query: 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
             A++D + A + + +  +    +  A   +   +          + +    
Sbjct: 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 11/86 (12%)

Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
           ++ +          Y  ++ D            + +  +G           AL  +  A 
Sbjct: 5   HHHSSGVDLGTENLYFQSMAD-----------VEKHLELGKKLLAAGQLADALSQFHAAV 53

Query: 185 ELDPNDPLYANNMQAAMSNLNNSSSA 210
           + DP++ +           +  S +A
Sbjct: 54  DGDPDNYIAYYRRATVFLAMGKSKAA 79

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 22/188 (11%), Positives = 53/188 (28%), Gaps = 31/188 (16%)

Query: 19  ELLRDTLNAESKEG-IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYK----DEVLQ 72
             L ++     ++G    A           P   +       E +   + K     E ++
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS-KERICHCFSKDEKPVEAIR 316

Query: 73  WYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAA 131
             S  +   P           K+     + ++  ++A+ +Y  A + + ++         
Sbjct: 317 VCSEVLQMEPDN-----VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

Query: 132 SNNKLKNYKLALRD------------------CQIAIKIDPHYAKAYGRMGLAYTQMNDY 173
           +   LK  +                        ++A++  P   +       A  +  D 
Sbjct: 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431

Query: 174 KAALEAYT 181
            AA E  +
Sbjct: 432 AAAKEVLS 439

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  109 bits (273), Expect = 6e-29
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 82  TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------VY 125
            EE    A   K  GN   ++++  +A+++Y +A+D                        
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
             N A   NK K+Y  A+      +KID +  KA  ++G+A       + A E   KAA 
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 186 LDPNDPLYANNMQAA 200
           L+PN+    N+ +  
Sbjct: 151 LNPNNLDIRNSYELC 165

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  107 bits (269), Expect = 8e-29
 Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 19/130 (14%)

Query: 80  SPTEEVKIE-AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------------------DN 120
           S  E+ K++  E  +  GN    Q   ++A+  Y  A+                    D 
Sbjct: 1   SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
            N   Y N +     + +   A       +K +    KA  R   A         A E  
Sbjct: 61  KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120

Query: 181 TKAAELDPND 190
                  P  
Sbjct: 121 KLLLRNHPAA 130

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  114 bits (286), Expect = 9e-29
 Identities = 33/104 (31%), Positives = 53/104 (50%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            AE+ K   N   +    E A+  YS+AI+ + SN +YY NR+ +  + + Y  AL D  
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
            AI++D  Y K Y R   +   +  ++AAL  Y    ++ P+D 
Sbjct: 65  RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  110 bits (276), Expect = 3e-28
 Identities = 45/261 (17%), Positives = 93/261 (35%), Gaps = 36/261 (13%)

Query: 31  EGIEVAVECLCK------------AYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNIN 78
            G+E A++ + K            A+             I    +L Y+  +  +     
Sbjct: 79  YGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKE 134

Query: 79  FS--PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------------- 123
                +EE   ++   K  G    ++ K +QA+++Y K +                    
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194

Query: 124 --VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
               + N A  + KL+ +  A+  C  A+++D +  K   R G A+  +ND++ A   + 
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254

Query: 182 KAAELDPNDPLYANNMQAAMSNLN--NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE 239
           K  +L PN+      +      +    +        +F  L+E   K  ++ S      +
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTD 314

Query: 240 LFANPGQQATATDGSNTGIQA 260
                 +Q + T GS + ++ 
Sbjct: 315 T-EMKEEQKSNTAGSQSQVET 334

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  110 bits (278), Expect = 1e-27
 Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 3/209 (1%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A   K+ GN   +  K + A+  Y+ A++    +PV+Y N +A    + + K  +     
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A+++ P Y+K   R   A   +  +  A+   +  +     +      M     N    S
Sbjct: 65  ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMS 124

Query: 209 SASGSGGVFPGLSEMSTKVLSDPS-IQQVFGELFANPGQQATATD-GSNTGIQALLNASQ 266
                 G     +   T++ + P+  ++   E   +    A+           A  + S 
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184

Query: 267 QIAAQLEQRNPELVEQIFQQFGPALNNFK 295
           +   +L      L ++  + +  A  +F 
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADESFT 213

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  102 bits (257), Expect = 9e-25
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 1/123 (0%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A   ++ G     ++ P  A  +  KAI+        Y   A       +         
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYIYMALIMADRNDSTEYYNYFD 294

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
            A+K+D + +  Y   G     + +Y  A + + KA ELDP +      +       N  
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354

Query: 208 SSA 210
              
Sbjct: 355 DDC 357

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 99.8 bits (249), Expect = 1e-23
 Identities = 24/123 (19%), Positives = 49/123 (39%)

Query: 84  EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
           E+      Y  +      ++   +    + KA+  D++N   Y +R   N  L+NY  A 
Sbjct: 265 ELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324

Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
           +D   A ++DP     Y ++     + N +      +++A    P  P   N     +++
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384

Query: 204 LNN 206
            N+
Sbjct: 385 KND 387

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 99.8 bits (249), Expect = 1e-23
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 17/173 (9%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
           A +   KA ++ P+NI P   +     ++    D+    +S      P        E   
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLAC-LAYRENKFDDCETLFSEAKRKFPEA-----PEVPN 376

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK---------LKNYKLALR 144
                   ++  ++A+ +Y  AI+ +N     Y   A    K         ++N+  A  
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436

Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
             + A K+DP   +A   +     Q  D   A+  + ++A+L          +
Sbjct: 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 97.1 bits (242), Expect = 1e-22
 Identities = 21/109 (19%), Positives = 35/109 (32%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           +  Y + G         +QA  ++ KA + D  N   Y   A    +   +         
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
           A +  P   +         T  ND+  AL+ Y  A EL+         +
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 91.7 bits (228), Expect = 7e-21
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 9/131 (6%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              Y  L   A +++K +     +S+A       P      A       ++  AL+   +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397

Query: 149 AIKIDPHYAKAYGRMGLAYTQ---------MNDYKAALEAYTKAAELDPNDPLYANNMQA 199
           AI+++      Y  +     +         + ++  A     KA++LDP        +  
Sbjct: 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ 457

Query: 200 AMSNLNNSSSA 210
                 +   A
Sbjct: 458 MKLQQEDIDEA 468

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.0 bits (195), Expect = 1e-16
 Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 22/210 (10%)

Query: 18  KELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPA-------------SNVDIESLFQL 64
           + +L   LN ++   ++     +  A   P  +                S   + S F +
Sbjct: 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170

Query: 65  YYKDEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-- 121
           +  +     Y             +     ++  +     +   +A   + + +D +N   
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230

Query: 122 -----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA 176
                  +   +         +   A  D + AI++ P    +Y  M L     ND    
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEY 289

Query: 177 LEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
              + KA +LD N+     +       L N
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQN 319

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 8/106 (7%), Positives = 27/106 (25%), Gaps = 11/106 (10%)

Query: 89  AEKYKNLGNT---------AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY 139
              Y  +                +   +A     KA   D  +       A    + ++ 
Sbjct: 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465

Query: 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
             A+   + +  +     +      + + +    +  + +    A+
Sbjct: 466 DEAITLFEESADLARTMEEKL--QAITFAEAAKVQQRIRSDPVLAK 509

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
             YA A    G  + +   Y  A++ Y  A EL  +   Y +N+ A   ++ +
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGD 54

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  105 bits (263), Expect = 2e-25
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 77  INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
              SP  + +  A + KN GN         +A+  Y  AI+ D + PV+Y N +A     
Sbjct: 14  KGLSP-SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST 72

Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
            + +  +     A++I P ++KA  R   A   + ++  A+   +  +     D     
Sbjct: 73  GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIE 131

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  100 bits (250), Expect = 9e-24
 Identities = 20/123 (16%), Positives = 44/123 (35%)

Query: 84  EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
            +      Y  L  T   ++  ++    + KA+D +   P  Y +R      L++YK A 
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330

Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
            D Q A  ++P     Y ++     +   +  +   + +     P  P         +++
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD 390

Query: 204 LNN 206
             +
Sbjct: 391 RGD 393

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 98.6 bits (246), Expect = 4e-23
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A      G     ++    A +   ++I+  +  P  Y   A +    +N +   +  Q
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPTPNSYIFLALTLADKENSQEFFKFFQ 300

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
            A+ ++P Y   Y   G  Y  + DYK A E + KA  L+P +      +   +      
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360

Query: 208 SSA 210
           + +
Sbjct: 361 TES 363

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.0 bits (234), Expect = 1e-21
 Identities = 17/132 (12%), Positives = 32/132 (24%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              Y + G         + A  ++ KA   +  N   Y   A    K   +  +      
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
                P   +         T   D+  A++ Y  A  L+         +   +      +
Sbjct: 370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429

Query: 209 SASGSGGVFPGL 220
             S         
Sbjct: 430 RQSSQDPTQLDE 441

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 89.8 bits (223), Expect = 3e-20
 Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 24/180 (13%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
           A E   KA  + P+N+ P   +    L++     E   +++      PT       E   
Sbjct: 329 AKEDFQKAQSLNPENVYPYIQLAC-LLYKQGKFTESEAFFNETKLKFPTL-----PEVPT 382

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----------------LK 137
                   +   + A+ +Y  A   +      +        K                 +
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
            +  A++    A ++DP   +A   +     QM     A+E +  +A L           
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 16/138 (11%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              Y  L     +Q K  ++   +++      + P      A       ++  A++   I
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403

Query: 149 AIKIDPHYAKAYGRMGLAYTQ----------------MNDYKAALEAYTKAAELDPNDPL 192
           A +++    K +  +G    +                   + AA++  TKA ELDP    
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463

Query: 193 YANNMQAAMSNLNNSSSA 210
               +      +     A
Sbjct: 464 AKIGLAQLKLQMEKIDEA 481

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 2/102 (1%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
              +  +   T + ++K   A+   +KA + D  +       A    +++    A+   +
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
            +  +     +        + +    +  L A    +     
Sbjct: 487 DSAILARTMDEKL--QATTFAEAAKIQKRLRADPIISAKMEL 526

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 138 NYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
           ++     D      + P     YA      G  +    ++  A++ Y  A ELDPN+P++
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 194 ANNMQAAMSNLNNSSSA 210
            +N+ A   +  +    
Sbjct: 62  YSNISACYISTGDLEKV 78

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 24/118 (20%), Positives = 48/118 (40%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           +  ++  G   M++ +   A+ +Y  A+D D +    Y    +      N+ LA++  + 
Sbjct: 74  SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
            I+      K +  +G AY    +Y  A  ++ K  EL PN  +       A +  + 
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 94.6 bits (236), Expect = 6e-23
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
           +  +      +   + +   +A+  ++K      ++P  Y  RA    +L  Y LA +D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 147 QI---AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
           +     +      +  +   G    +      A++ Y  A + D         + +   N
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 204 LNN 206
             N
Sbjct: 121 KGN 123

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 3/121 (2%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVI---EYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD 145
              Y        +  K + A      Y   ++   +    +        K     LA++ 
Sbjct: 37  PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
            Q A+  D      YG++G  +    ++  A++   K       DP     +  A     
Sbjct: 97  YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156

Query: 206 N 206
            
Sbjct: 157 E 157

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 86.9 bits (216), Expect = 4e-20
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 3/111 (2%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            + Y  +G+    +     A+    K I    ++P  +     +    K Y  A      
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 149 AIKIDPHYAKAYGRMGLAYTQMND---YKAALEAYTKAAELDPNDPLYANN 196
            +++ P+    Y     A    +       A   Y K  E+         +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 84.6 bits (210), Expect = 3e-19
 Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 19/184 (10%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
           A++    A D     +D    +     +        +Q+    I  + T+      + + 
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTD-----PKVFY 146

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN---YKLALRDCQIAI 150
            LG       +  +A   + K ++   +  + Y  RA +N          LA    +  I
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206

Query: 151 KIDP--------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202
           ++             +A   +   YT   D   A  A+     LDP +    + ++  + 
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266

Query: 203 NLNN 206
           + ++
Sbjct: 267 HHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.1 bits (162), Expect = 9e-13
 Identities = 15/92 (16%), Positives = 21/92 (22%), Gaps = 3/92 (3%)

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL---E 178
           N       A    K  NY  A+           +    Y R  + Y ++  Y  A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
            Y                    +      S A
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 11/96 (11%)

Query: 89  AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLK 137
              Y         QD   K   A   Y K I+                    A      +
Sbjct: 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173
           +   A    +  + +DP   KA   + +     + +
Sbjct: 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 94.8 bits (236), Expect = 3e-24
 Identities = 21/113 (18%), Positives = 36/113 (31%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
             E+   LG    Q  K + A   +      D+ +  Y+    A    L  Y+ AL+   
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
               +D +  +        + Q+ D   A   +  A  L    P +      A
Sbjct: 77  YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 66.7 bits (163), Expect = 8e-14
 Identities = 15/99 (15%), Positives = 35/99 (35%)

Query: 112 YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171
            +                  +  +   +  A +  Q    +D + A+ +  +G     + 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
            Y+ AL++Y+  A +D N+P +  +       L +   A
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 99.2 bits (248), Expect = 9e-24
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 8/176 (4%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
           ++ A+E    A  + PD ID   N+   +L      +  +Q Y + + ++P         
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAA-ALVAAGDMEGAVQAYVSALQYNPDL-----YC 136

Query: 91  KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
              +LGN      + E+A   Y KAI+   +  V + N     N      LA+   + A+
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
            +DP++  AY  +G    +   +  A+ AY +A  L PN  +   N+         
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 27/122 (22%), Positives = 49/122 (40%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE Y NLGN   ++ + ++A+  Y  A+         Y N AA+     + + A++    
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A++ +P        +G     +   + A   Y KA E  PN  +  +N+    +      
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186

Query: 209 SA 210
            A
Sbjct: 187 LA 188

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 27/122 (22%), Positives = 52/122 (42%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  + NLG     Q +   A+  + KA+  D +    Y N      + + +  A+     
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A+ + P++A  +G +   Y +      A++ Y +A EL P+ P    N+  A+    + +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 209 SA 210
            A
Sbjct: 289 EA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 97.6 bits (244), Expect = 3e-23
 Identities = 29/118 (24%), Positives = 48/118 (40%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            + Y NLGN   +    ++AV  Y +A+    ++ V + N A    +     LA+   + 
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           AI++ PH+  AY  +  A  +      A + Y  A  L P      NN+        N
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 97.2 bits (243), Expect = 4e-23
 Identities = 24/118 (20%), Positives = 48/118 (40%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  + NL     +Q   + A+  Y +AI+     P  YCN A +  +  +   A      
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           A+++ P +A +   +     +  + + A+  Y KA E+ P      +N+ + +     
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 96.5 bits (241), Expect = 6e-23
 Identities = 24/118 (20%), Positives = 49/118 (41%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            + Y NL N   ++    +A   Y+ A+    ++     N A    +  N + A+R  + 
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           A+++ P +A A+  +     Q    + AL  Y +A  + P      +NM   +  + +
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 91.1 bits (227), Expect = 7e-21
 Identities = 24/119 (20%), Positives = 44/119 (36%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
              L +   Q    E A     +    +  N       ++ + + +    +     +AIK
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
            +P  A+AY  +G  Y +    + A+E Y  A  L P+      N+ AA+    +   A
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 96.0 bits (240), Expect = 1e-23
 Identities = 20/118 (16%), Positives = 48/118 (40%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            + +  LG   ++ ++P+ A+    +A++ + ++                   AL     
Sbjct: 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
             + DP +A A+   G+ Y    + + ALE   KA ++ P+  L  +  +    + ++
Sbjct: 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 94.5 bits (236), Expect = 4e-23
 Identities = 26/118 (22%), Positives = 45/118 (38%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  Y N  N     ++ E+A+  Y KA++ D+S    Y          + YK A    + 
Sbjct: 57  AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           A++        +  +G    ++   K AL    +A EL+ ND          ++N   
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 93.3 bits (233), Expect = 1e-22
 Identities = 25/118 (21%), Positives = 44/118 (37%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  Y   GN  + ++  ++A   + KA+     N   +        KL+  KLAL   Q 
Sbjct: 91  ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           A++++ +  +A  + G+          AL  +    E DP       N     +   N
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 91.8 bits (229), Expect = 4e-22
 Identities = 23/122 (18%), Positives = 44/122 (36%)

Query: 85  VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144
             + +           +    E+A   ++KAI+ +  + + Y N A   + +   + AL 
Sbjct: 19  SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA 78

Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
               A+++D   A AY   G  Y     YK A + + KA      +      +   +  L
Sbjct: 79  FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138

Query: 205 NN 206
             
Sbjct: 139 EQ 140

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 4/105 (3%)

Query: 106 EQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161
             +   +  +            +    +    ++  +Y+ A      AI+ +   A  Y 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
                 + +N+ + AL  Y KA ELD +                 
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 14/85 (16%), Positives = 30/85 (35%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E     G     +   ++A+ +++   + D  +   + N   +    +N + AL     
Sbjct: 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDY 173
           AI I P +  A     L     + +
Sbjct: 219 AIDIQPDHMLALHAKKLLGHHHHHH 243

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 12/197 (6%)

Query: 18  KELLRDTLNAESKEGIEVAVECLCKA-YDIPDNIDPASNVDIESLFQLYYKDEVLQWYSN 76
           + L    LN  S E      E    +   +  + D       ++LF      +VL   + 
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK-ADTLFVRSRFIDVLAITTK 330

Query: 77  INFSPTEEVKIE---AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASN 133
           I       ++I+    + Y     +  +  +  +  +  +  +D      V +       
Sbjct: 331 I-------LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383

Query: 134 NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
             +     A R    +  +DP +  A+     ++    ++  A+ AYT AA L     L 
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

Query: 194 ANNMQAAMSNLNNSSSA 210
              +      L N   A
Sbjct: 444 YLFLGMQHMQLGNILLA 460

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 91.8 bits (228), Expect = 8e-21
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 8/177 (4%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
            +    K  +I P N+D    + + SL +   K+++    ++ ++  P +     A  + 
Sbjct: 324 VLAITTKILEIDPYNLD-VYPLHLASLHESGEKNKLYLISNDLVDRHPEK-----AVTWL 377

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
            +G   +  +K  +A   +SK+   D      +   A S      +  A+     A ++ 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                 Y  +G+ + Q+ +   A E    +  L   DPL  N +     N ++  +A
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 88.7 bits (220), Expect = 8e-20
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-------YCNRAASNNKLKNYKLALR 144
              LG  A  +   + A+  +  A+                + N   +  KLK Y  A+ 
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537

Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
                + +  + A  +  + L Y        A+    ++  + PN+ + ++ ++ A+
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 86.4 bits (214), Expect = 4e-19
 Identities = 18/116 (15%), Positives = 39/116 (33%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              +    ++   + + +QA+  Y+ A        + Y      + +L N  LA    Q 
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
           +  +  +       +G+     +D + A+  +  A  L            A  +NL
Sbjct: 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 83.7 bits (207), Expect = 4e-18
 Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 7/180 (3%)

Query: 34  EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYK 93
           + A EC  +A      +D       + L   +      +W   +  + +   K +A   +
Sbjct: 217 DRAKECYKEAL----MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 94  NLGNTAM---QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
           +L    +     +   +   +Y  +I+    +      +A +      +   L      +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +IDP+    Y     +  +  +            +  P   +    +      +N  S A
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 80.7 bits (199), Expect = 5e-17
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              Y  LG   MQ      A      +      +P+             + + A+   Q 
Sbjct: 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500

Query: 149 AIKI-------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
           A+ +       +  +A  +  +G AY ++  Y AA++A  +   L  ND      +    
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560

Query: 202 SNLNNSSSA 210
            +      A
Sbjct: 561 LHKKIPGLA 569

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 5/139 (3%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN---INFSPTEEVKIE 88
           I +A E L  +Y +   +    + + +   F        +  + N   +        K  
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGV-VAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  + NLG+   +    + A+   ++ +    ++   +   A      K   LA+     
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 149 AIKIDPHYAKAYGRMGLAY 167
           ++ I P+   A   +  A 
Sbjct: 576 SLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 3/126 (2%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIE---YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD 145
            E +  L +  +     E  ++    YS     D +          +    ++      D
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
              +I      +             + +   L   TK  E+DP +        A++    
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353

Query: 206 NSSSAS 211
             +   
Sbjct: 354 EKNKLY 359

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 92.5 bits (231), Expect = 7e-23
 Identities = 23/118 (19%), Positives = 43/118 (36%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              Y++ G +  +  +  QAV+   +  D D  +     +   +  K           + 
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           ++   P   K    +GL Y Q+  Y  A+    K AE +P +      +  A+ NL  
Sbjct: 68  SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 89.4 bits (223), Expect = 9e-22
 Identities = 15/118 (12%), Positives = 43/118 (36%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            +   +LG   ++    ++      +++     N         +  +++ Y LA+     
Sbjct: 42  VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
             + +P       R+G+A   +  +  A++++  A  L PN+      +  +   +  
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 86.4 bits (215), Expect = 1e-20
 Identities = 25/102 (24%), Positives = 44/102 (43%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            +    LG T +Q  K + AV    K  + +  N         + + L  +  A+   +I
Sbjct: 76  VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+ + P+  K +  +  +Y QM  ++ AL  + KA ELD   
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.0 bits (183), Expect = 5e-16
 Identities = 15/88 (17%), Positives = 30/88 (34%)

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
           D+   VYY ++  S+ K   Y  A+   +     D         +G+AY +        E
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNN 206
              ++    P++   A  +      +  
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQK 91

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 10/73 (13%), Positives = 26/73 (35%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                 LG       + ++A+  +  A+    +    +   A S  ++  ++ AL   + 
Sbjct: 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

Query: 149 AIKIDPHYAKAYG 161
           A ++D   +    
Sbjct: 170 ANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 9/57 (15%), Positives = 19/57 (33%)

Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           +  D      Y   G+++ +   Y  A+    +  + D  D   A ++  A      
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 94.3 bits (234), Expect = 3e-22
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 44  YDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103
            ++P   D    V++    +                   EE    A++ K  GN+  +++
Sbjct: 141 PNVPPMADLLYEVEVIGFDETKEGKARSDM-------TVEERIGAADRRKMDGNSLFKEE 193

Query: 104 KPEQAVIEYSKAIDCDNSNPVY-----------------YCNRAASNNKLKNYKLALRDC 146
           K E+A+ +Y  AI     + ++                 + N AA   KLK Y  A+  C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
            I +  +    KA  R G A  ++    +A + + KA +  P+D 
Sbjct: 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 92.8 bits (231), Expect = 4e-22
 Identities = 23/117 (19%), Positives = 41/117 (35%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A+     G           A  ++S+A+      P  +        +  N+  A      
Sbjct: 43  AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
            +++DP Y  A+   G+A       K A +      + DPNDP  +  +  A   L+
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD 159

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAI-DCDNSNPVY---YCNRAASNNKLKNYKLAL 143
              K + L        + E  +    + +     ++         R    + L    LA 
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63

Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
            D   A+ I P   + +  +G+  TQ  ++ AA EA+    ELDP       N   A+  
Sbjct: 64  NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123

Query: 204 LNNSSSA 210
                 A
Sbjct: 124 GGRDKLA 130

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E +  LG    Q    + A   +   ++ D +    + NR  +       KLA  D   
Sbjct: 77  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
             + DP+       + LA  ++ D K A E   +  E    +    N ++  + N++ 
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 4/121 (3%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN---YKLALRD 145
             +   L   A Q+   +QA     +  +  +     +         +      +    D
Sbjct: 145 PFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 203

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
                 +  H ++    +G  Y  + D  +A   +  A   + ++ +        +S L 
Sbjct: 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 263

Query: 206 N 206
            
Sbjct: 264 Q 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 4/151 (2%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEK 91
            ++A + L   Y   P++   +  + + +  +L  K        +   S  E+       
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIV 184

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
              LGN   +Q   E+   + +                      L +   A    ++A+ 
Sbjct: 185 EFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182
            + H    +    L  + +   +  L    +
Sbjct: 244 NNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 4/125 (3%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              + N G       + + A  +       D ++P        +  KL   + A    + 
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQ 169

Query: 149 AIKIDPHYAKAYGRMGLAYTQMND---YKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
             +        +  +      +++    +      T    L  +       +     +L 
Sbjct: 170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229

Query: 206 NSSSA 210
           +  SA
Sbjct: 230 DLDSA 234

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 88.2 bits (220), Expect = 5e-22
 Identities = 40/116 (34%), Positives = 63/116 (54%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++ D +N   + N   +  K  +Y  A+   Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
           A+++DP+ A+A+  +G AY +  DY  A+E Y KA ELDPN+     N+  A    
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 66.6 bits (164), Expect = 5e-14
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK 174
           A+D  NS   +Y N   +  K  +Y  A+   Q A+++DP+ A+A+  +G AY +  DY 
Sbjct: 2   AMDPGNSAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60

Query: 175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
            A+E Y KA ELDPN+     N+  A     +
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 87.5 bits (218), Expect = 7e-22
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 2/107 (1%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E+Y   G          +++  + KAI  D     Y+  +  +   L+ Y+ A+     
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 149 AIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
            I +  D +    +     A   +   +   E     A+L+ +   +
Sbjct: 66  VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHHH 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
            + NP  Y           NY  ++   + AI++DP  +K +   G A   +  Y+ A++
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 179 AYTKAAELDPNDPLYA---NNMQAAMSNLNN 206
            Y     +   D            A+  +  
Sbjct: 62  CYNYVINVIE-DEYNKDVWAAKADALRYIEG 91

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
           +     + Y   G+      +Y  +++ + KA +LDP +  Y      A+ NL 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE 54

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 87.8 bits (219), Expect = 1e-21
 Identities = 38/118 (32%), Positives = 60/118 (50%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++ D  +   + N   +  K  +Y  A+   Q 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           A+++DP  A+A+  +G AY +  DY  A+E Y KA ELDP       N+  A     +
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 85.5 bits (213), Expect = 7e-21
 Identities = 36/101 (35%), Positives = 56/101 (55%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++ D  +   + N   +  K  +Y  A+   Q 
Sbjct: 35  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           A+++DP  A+A+  +G AY +  DY  A+E Y KA ELDP 
Sbjct: 95  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------DNSNPVY---YCNRAASNNKLKNY 139
                 +G  A Q  + + A   +  A++       + +   +     N      KLK Y
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252

Query: 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
             AL   + A+ + P  A  Y  +G  ++ M +++ A++ +  A  L  +D      +  
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312

Query: 200 AMSNLNNSSSA 210
            +      S A
Sbjct: 313 CIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 9/178 (5%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
             +      +  P +      V I +L +L   +E+       ++  P+         + 
Sbjct: 41  CYKLTSVVMEKDPFHAS-CLPVHIGTLVELNKANELFYLSHKLVDLYPSN-----PVSWF 94

Query: 94  NLGNT-AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
            +G    M   K E A    SKA   + +    +     S      +  A+     A ++
Sbjct: 95  AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                     +GL Y   N+ K A   +++A  + P DP   + +           +A
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA 212

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 19/108 (17%), Positives = 34/108 (31%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              +   G++   + + +QA+  Y  A        +             N KLA R    
Sbjct: 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
           A+ I P        +G+   Q  ++K A + +  A E           
Sbjct: 185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 7/151 (4%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYS-----NINFSPTEEVKIEA 89
           A     +A  I P++      V +   FQ        +W+               V    
Sbjct: 178 AERFFSQALSIAPEDPFVMHEVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236

Query: 90  EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149
               NLG+   +  K  +A+  + +A+     N   Y      ++ + N++ A+     A
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296

Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           + +      +   +G           A    
Sbjct: 297 LGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 1/104 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            +   +L          +      S  ++ D  +         +  +L            
Sbjct: 22  LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81

Query: 149 AIKIDPHYAKAYGRMGLAY-TQMNDYKAALEAYTKAAELDPNDP 191
            + + P    ++  +G  Y    +  + A    +KA  L+    
Sbjct: 82  LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 12/101 (11%), Positives = 36/101 (35%)

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
           + +     +++D    N     + A  +    ++K+  +   + ++ DP +A        
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
              ++N          K  +L P++P+    +      + +
Sbjct: 65  TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 7/63 (11%), Positives = 17/63 (26%)

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           ++            +   +    D+K   +  +   E DP            +  LN ++
Sbjct: 14  SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73

Query: 209 SAS 211
              
Sbjct: 74  ELF 76

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 94.5 bits (234), Expect = 1e-21
 Identities = 35/122 (28%), Positives = 58/122 (47%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A+   NL N   +Q   E+AV  Y KA++        + N A+   +    + AL   + 
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           AI+I P +A AY  MG    +M D + AL+ YT+A +++P      +N+ +   +  N  
Sbjct: 69  AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128

Query: 209 SA 210
            A
Sbjct: 129 EA 130

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 86.4 bits (213), Expect = 6e-19
 Identities = 26/104 (25%), Positives = 52/104 (50%)

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
           NL +   QQ K ++A++ Y +AI    +    Y N   +  ++++ + AL+    AI+I+
Sbjct: 48  NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
           P +A A+  +   +    +   A+ +Y  A +L P+ P    N+
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 82.6 bits (203), Expect = 1e-17
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
           IE AV    KA ++ P+     SN+    L Q     E L  Y   I  SPT      A+
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTF-----AD 78

Query: 91  KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
            Y N+GNT  +    + A+  Y++AI  + +    + N A+ +    N   A+   + A+
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138

Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           K+ P +  AY  +      + D+    E   K   +   D L  N + +   + +     
Sbjct: 139 KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA-DQLEKNRLPSVHPHHSMLYPL 197

Query: 211 SGS 213
           S  
Sbjct: 198 SHG 200

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 18/89 (20%), Positives = 36/89 (40%)

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
           +     N A    +  N + A+R  + A+++ P +A A+  +     Q    + AL  Y 
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 182 KAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +A  + P      +NM   +  + +   A
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGA 96

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 8/152 (5%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
           A+    +A  I P   D  SN+   +L ++      LQ Y+  I  +P       A+ + 
Sbjct: 62  ALMHYKEAIRISPTFADAYSNM-GNTLKEMQDVQGALQCYTRAIQINPAF-----ADAHS 115

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
           NL +         +A+  Y  A+      P  YCN A     + ++       +  + I 
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
               +      +       Y  +       AE
Sbjct: 176 ADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAE 207

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
            P +A +   +     +  + + A+  Y KA E+ P      +N+ + +        A
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 86.4 bits (214), Expect = 5e-21
 Identities = 13/107 (12%), Positives = 32/107 (29%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
             +   +       + + E+A + +      D  N  Y    AA     + ++ A     
Sbjct: 35  MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
           +A  +  +        G    ++     A E +    +   ++ L  
Sbjct: 95  VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKI 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 6/124 (4%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
            E E        A+      + +         D  + +Y  + A         + A    
Sbjct: 6   TENESISTAVIDAINSGATLKDINAIPD----DMMDDIY--SYAYDFYNKGRIEEAEVFF 59

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           +     D +       +   Y     ++ A + Y  A  L  ND     +       L  
Sbjct: 60  RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119

Query: 207 SSSA 210
              A
Sbjct: 120 PLKA 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 90.9 bits (226), Expect = 6e-21
 Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 34  EVAVECLCKAYDIPDNIDPA----SNVDIESLFQLYYKDEVLQWY-SNINFSPTEEVKIE 88
           E A   +    +  D +       +  +  S  Q       +        F      K +
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFK-D 64

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                  G   +++      ++    AI  D  +   +     +  + +N + A+   Q 
Sbjct: 65  WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
            +++ P+  KA   + ++YT  +  + A EA     + +P       N + +       S
Sbjct: 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184

Query: 209 SASGSGGVFPGLSEMSTKVLS------DPSIQQVFGELFANPGQ 246
            +     V  G+ E+  +         DP +Q   G LF   G+
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 14/179 (7%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDI---------ESLFQLYYKDEVLQWYSN-INFSPTEE 84
           A E L       P       N            +S       + V + Y    + +    
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM- 210

Query: 85  VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144
             I+ +    LG       +  +A+  ++ A+     +   +    A+       + A+ 
Sbjct: 211 --IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268

Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
               A++I P + ++   +G++   +  Y+ A+  +  A  L             A+S 
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------------DNSNPVYYCNRAASNNKL 136
               KN   +     +  ++ ++ S                 D  +P          +  
Sbjct: 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226

Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
             +  A+     A+ + P     + R+G      +  + A+EAYT+A E+ P       N
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286

Query: 197 MQAAMSNLNN 206
           +  +  NL  
Sbjct: 287 LGISCINLGA 296

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            +    L  +       + A       I  +        N+  S    +    +  D  +
Sbjct: 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192

Query: 149 AIKIDPHYAKA------------YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
              +   Y +A               +G+ +    ++  A++A+  A  + P D    N 
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252

Query: 197 MQAAMSNLNNSSSA 210
           + A ++N + S  A
Sbjct: 253 LGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 19/119 (15%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              +  LG T    D+ E+AV  Y++A++          N   S   L  Y+ A+ +   
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306

Query: 149 AIKIDPHYAKAYG--------------RMGLAYTQMNDYKAA-----LEAYTKAAELDP 188
           A+ +                       R+ L+     +   A     L+   +A  LDP
Sbjct: 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP 365

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 91.4 bits (227), Expect = 9e-21
 Identities = 18/122 (14%), Positives = 36/122 (29%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              +  L +  +         +   + +     +P             + +  A    Q 
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A    P +      +G A       +AA  AYT+A +L P +P     +      L +  
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 209 SA 210
           + 
Sbjct: 143 AL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 13/93 (13%), Positives = 33/93 (35%)

Query: 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164
             + +++   A+     + V +   A +   + +        Q  + + P + +A  R+G
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
                   +  A     +A++  P  P  A  +
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 12/69 (17%), Positives = 20/69 (28%)

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
           +    L   + A++  P    A+  +  A   M D  A   A  +   L P  P     +
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 198 QAAMSNLNN 206
                    
Sbjct: 64  GRVRWTQQR 72

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 1/114 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E    LG     Q +  +A +   +A D    +P        +       + A      
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202
           A ++ P       ++     ++ D++ AL+  +          + A    A +S
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQGVGAVEPFAFLS 169

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           EA    N G  A  +   + A+  +S   D    +     N       LKN   A +   
Sbjct: 5   EAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFT 61

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA-AELDPNDPLYANNM 197
            +I  D H A AY + G+ Y Q   Y  A++   +A  +L  N  +    +
Sbjct: 62  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 18/137 (13%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           +    N+G          +A   ++++I+ D    V Y  R     + + Y LA++D + 
Sbjct: 37  SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96

Query: 149 AIK-IDPHYAKAYGR---------------MGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
           A+  +  +    Y                 +   Y +  ++K A E    A  +      
Sbjct: 97  ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156

Query: 193 YANNMQAAMSNLNNSSS 209
             + +  AM  +     
Sbjct: 157 --SKIDKAMECVWKQKL 171

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
           +   N        K++K AL        +   +++    +G  YT + +   A +A+T++
Sbjct: 7   ISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63

Query: 184 AELDPNDPLYANNMQAAMSNLNNSSSA 210
              D +  +                 A
Sbjct: 64  INRDKHLAVAYFQRGMLYYQTEKYDLA 90

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 75  SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAI--------DCDNSNPVY- 125
           ++++    +++ + +E  KN+GNT  +    E A+ +Y+K +          ++++    
Sbjct: 209 ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL 268

Query: 126 -------YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
                    N  A   K+ +++ A+  C  A++IDP   KA  R    +  + +Y  AL 
Sbjct: 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328

Query: 179 AYTKAAELDPNDPLYANNMQAA 200
              KA E+ P D      +   
Sbjct: 329 DLKKAQEIAPEDKAIQAELLKV 350

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 85.0 bits (210), Expect = 2e-20
 Identities = 20/118 (16%), Positives = 33/118 (27%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
             E+  +L     Q    E A   +      D+ +  ++    A    +  Y LA+    
Sbjct: 20  TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
               +D    +          Q  +   A      A EL  N P +        S L 
Sbjct: 80  YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 14/105 (13%), Positives = 36/105 (34%)

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
                  +   +  +       + A +  +   Y+ A    Q    +D + ++ +  +G 
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
               M  Y  A+ +Y+  A +D  +P +  +    +      + A
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 19/176 (10%), Positives = 47/176 (26%), Gaps = 8/176 (4%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
           ++  +  LC+A+ + P  +   ++        L     +L         +P +       
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPQQ-----VV 345

Query: 91  KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
              +        +  ++ +    +A        V   +       L+  +  L     A 
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
            + P    A          +   +  L    +A  L P   +   +       L +
Sbjct: 406 GLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 89.4 bits (222), Expect = 5e-20
 Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 8/179 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + P  +   ++        L     +L         +P +        
Sbjct: 225 QRLLPVLCQAHGLTPQQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPQQ-----VVA 278

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             +        +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + P    A          +   +  L    +A  L P   +   +       L      
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 397

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 89.0 bits (221), Expect = 5e-20
 Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 8/173 (4%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
            +  LC+A+ + P+ +   ++ D      L     +L         +P +          
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDG-GKQALETVQALLPVLCQAHGLTPEQ-----VVAIA 178

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
           + G      +  ++ +    +A        V   +       L+  +  L     A  + 
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           P    A    G     +   +  L    +A  L P   +   +       L  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET 291

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 89.0 bits (221), Expect = 6e-20
 Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 8/182 (4%)

Query: 31  EGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIE 88
           E ++  +  LC+A+ + P  +  A   +      L     +L         +P +     
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVV-AIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----- 241

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                + G      +  ++ +    +A        V   + +     L+  +  L     
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ 301

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A  + P    A    G     +   +  L    +A  L P   +   +       L    
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361

Query: 209 SA 210
             
Sbjct: 362 RL 363

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 88.3 bits (219), Expect = 1e-19
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 8/163 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + P  +   ++ D      L     +L         +P +        
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPEQ-----VVA 380

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             + G      +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
           + P    A    G     +    A L     A     ND L A
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 8/177 (4%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
            +  LC+A+ + P  +   ++        L     +L         +P +          
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSG-GKQALETVQRLLPVLCQAHGLTPQQ-----VVAIA 314

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
           + G      +  ++ +    +A        V   +       L+  +  L     A  + 
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 374

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           P    A    G     +   +  L    +A  L P   +   +       L      
Sbjct: 375 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRL 431

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 8/179 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + P  +   ++ D      L     +L         +P +        
Sbjct: 89  QRLLPVLCQAHGLTPQQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPEQ-----VVA 142

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             +        +  +  +    +A        V   +       L+  +  L     A  
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 202

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + P    A    G     +   +  L    +A  L P   +   +       L      
Sbjct: 203 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 21/188 (11%), Positives = 48/188 (25%), Gaps = 9/188 (4%)

Query: 26  NAESKEGI-EVAVECLCKAYDI-PDNIDPASNVDIESLFQ-LYYKDEVLQWYSNINFSPT 82
            A + E +  VA E       +    +   +     +  + ++     L     +N +P 
Sbjct: 12  GARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP-LNLTPE 70

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
           +          +        +  ++ +    +A        V   +       L+  +  
Sbjct: 71  Q-----VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125

Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202
           L     A  + P    A          +   +A L    +A  L P   +   +      
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185

Query: 203 NLNNSSSA 210
            L      
Sbjct: 186 ALETVQRL 193

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 12/124 (9%), Positives = 26/124 (20%), Gaps = 4/124 (3%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK--LKNYKLALRDC 146
              +         +     A       +  D    +    R        +  ++ AL   
Sbjct: 4   HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG- 62

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
              + + P    A          +   +  L    +A  L P   +   +       L  
Sbjct: 63  -APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 121

Query: 207 SSSA 210
               
Sbjct: 122 VQRL 125

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 86.3 bits (214), Expect = 3e-20
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 1/129 (0%)

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
           +  +I ++    L     +    ++A + Y + +    +N       A         K A
Sbjct: 48  KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107

Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAY-TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
           LR  +  ++++     A   +G  Y       K  LE   K                 + 
Sbjct: 108 LRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167

Query: 202 SNLNNSSSA 210
                   A
Sbjct: 168 LFTTRYEKA 176

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 80.2 bits (198), Expect = 4e-18
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 16/125 (12%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAI----------------DCDNSNPVYYCNRAAS 132
            ++     + A++  +  QAV  + + I                     +       A +
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
             K +NY  A    +  ++  P+                  K AL  Y K  +L+ ++  
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 193 YANNM 197
               +
Sbjct: 124 ANIFL 128

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 88.1 bits (219), Expect = 4e-20
 Identities = 15/123 (12%), Positives = 42/123 (34%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E     G + ++     +A + +             + +   +  + +   LA+     
Sbjct: 21  HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A  +DP     +  + +++T  ++  AAL +        P      +    A  ++++ +
Sbjct: 81  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140

Query: 209 SAS 211
             S
Sbjct: 141 VQS 143

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 29/183 (15%), Positives = 71/183 (38%), Gaps = 13/183 (7%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-----------INFSPTE 83
           A+  L  A  + P +I   + + + S    +  +  L                 + +   
Sbjct: 74  AIIALNHARMLDPKDIAVHAALAV-SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132

Query: 84  EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
           +V I+    ++        ++  +       A++ + ++   + +     N   NY  A 
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA 192

Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
            + + A+++ P  A+ + ++G      N  + AL+AY +A +++P       NM  + SN
Sbjct: 193 ANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252

Query: 204 LNN 206
           ++ 
Sbjct: 253 MSQ 255

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E +++LG T  + +K   A+I  + A   D  +   +   A S+    N   AL   + 
Sbjct: 55  EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114

Query: 149 AIKIDPHYAKAYGR---------------MGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
            +   P Y +                       +   N+Y+        A E++PND   
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174

Query: 194 ANNMQAAMSNLNN 206
             ++    +  NN
Sbjct: 175 HASLGVLYNLSNN 187

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 18/115 (15%), Positives = 41/115 (35%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A+ + +LG      +  + A     +A++    +   +    A+       + AL     
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
           A+ I+P Y +    M ++Y+ M+ Y  A +   +A  +               + 
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---------------NSNPVYYCNRAASN 133
              +  L  +   +     A+      +                  + + +   +     
Sbjct: 89  IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148

Query: 134 NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
                Y+        A++++P+ A+ +  +G+ Y   N+Y +A     +A EL P+D   
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

Query: 194 ANNMQAAMSNLNNSSSA 210
            N + A ++N N    A
Sbjct: 209 WNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 21/105 (20%), Positives = 37/105 (35%)

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
            Q   +Y    +              S  KL N   A    +   +  P   +A+  +GL
Sbjct: 4   LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL 63

Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
              +      A+ A   A  LDP D      +  + +N +N+++A
Sbjct: 64  TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 86.7 bits (214), Expect = 3e-19
 Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 37/191 (19%)

Query: 31  EGIEVAVECLCK------------AYD----IPDNIDPASNVDIESLFQLYYKDEVLQWY 74
            GI+ A+E + +             +         I+P + +  E   + +         
Sbjct: 200 IGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE------KA 253

Query: 75  SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-DNSNPVY-------- 125
                  T+E   +A   K  G    +  K  QAVI+Y K +   +    +         
Sbjct: 254 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE 313

Query: 126 ------YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179
                 + N A    KL+ Y  A+  C  A+ +D    K   R G A   MN++++A   
Sbjct: 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 373

Query: 180 YTKAAELDPND 190
           + K  E++P +
Sbjct: 374 FEKVLEVNPQN 384

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 85  VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144
           ++   +    LG       + + A+  + +A+  +  +P      A +  KL     AL 
Sbjct: 1   MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60

Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQM-----------NDYKAALEAYTKAAELDPNDPLY 193
           + +  +   P Y   Y  +  AY  +              + AL     A  ++P     
Sbjct: 61  NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120

Query: 194 ANNMQAAMSNLNN 206
                   + L  
Sbjct: 121 HLQRGLVYALLGE 133

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 1/101 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  +   G       + ++A     +A+  ++  P      A     +     AL     
Sbjct: 118 APLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAK 176

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
           A++  P       R   A       + A  A         +
Sbjct: 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 79.9 bits (198), Expect = 6e-18
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 12/133 (9%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRA-----------ASNNKLK 137
            E    L  T ++      A+      +         Y   +                  
Sbjct: 39  PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG 98

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
             + AL   + A +++P YA  + + GL Y  + +   A  +  +A  L+    +  + +
Sbjct: 99  YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR-SAL 157

Query: 198 QAAMSNLNNSSSA 210
                ++     A
Sbjct: 158 AELYLSMGRLDEA 170

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 12/129 (9%)

Query: 89  AEKYKNLGNT-----------AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137
              Y  L                 +   EQA+     A   +      +  R      L 
Sbjct: 73  LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
               A    + A+ ++    +    +   Y  M     AL  Y KA E  P D       
Sbjct: 133 ERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191

Query: 198 QAAMSNLNN 206
            +A+     
Sbjct: 192 ASALLLKGK 200

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 14/91 (15%), Positives = 24/91 (26%)

Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           +              L  Y  AL   + A+K +P   +A   +     ++     ALE  
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211
                  P        +  A   L   +   
Sbjct: 63  KTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 2/141 (1%)

Query: 66  YKDEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV 124
           Y D     Y     F     ++ +  +    G   +Q+     AV+ +  A+  D  +  
Sbjct: 41  YDDLTSATYDKGYQFEEENPLR-DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME 99

Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
            +     +  + +   LA+   +  +++ P    A   + +++T  +  + A E      
Sbjct: 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159

Query: 185 ELDPNDPLYANNMQAAMSNLN 205
              P         +       
Sbjct: 160 RYTPAYAHLVTPAEEGAGGAG 180

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 23/146 (15%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 60  SLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
           SL       EV + +   +   PT    I+ +    LG       + ++AV  ++ A+  
Sbjct: 190 SLLSDSLFLEVKELFLAAVRLDPTS---IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
             ++ + +    A+       + A+   + A+++ P Y ++   +G++   +  ++ A+E
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNL 204
            + +A  +            A   N+
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENI 332

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.9 bits (195), Expect = 8e-17
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 15/185 (8%)

Query: 36  AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYS-----NINFSPTEEVKIEA 89
           A+  L +  ++ PDN      + + S      + +  +           ++       E 
Sbjct: 117 AISALRRCLELKPDNQTALMALAV-SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175

Query: 90  EKYKNLGNT------AMQQDKPEQAVIEYSKAI--DCDNSNPVYYCNRAASNNKLKNYKL 141
                LG +       +      +    +  A+  D  + +P   C      N    Y  
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235

Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
           A+     A+ + P+    + ++G      N  + A+ AY +A EL P       N+  + 
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295

Query: 202 SNLNN 206
            NL  
Sbjct: 296 INLGA 300

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 89  AEKYKNLGNT-AMQQDKPEQAVIEYSKAIDCDNSNPVY----YCNRAASNNKLKNYKLAL 143
            E  K          D  +     Y K    +  NP+              +  +   A+
Sbjct: 25  EEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84

Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
              + A++ DP + +A+  +G    +      A+ A  +  EL P++      +  + +N
Sbjct: 85  LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144

Query: 204 LNNSSSA 210
            +    A
Sbjct: 145 ESLQRQA 151

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 17/139 (12%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAI---------------DCDNSNPVYYCNRAASN 133
                 L  +   +    QA       +                   +          S 
Sbjct: 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191

Query: 134 NKLKNYKLALRDCQIAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
                +         A+++DP          +G+ +    +Y  A++ +T A  + PND 
Sbjct: 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251

Query: 192 LYANNMQAAMSNLNNSSSA 210
           L  N + A ++N N S  A
Sbjct: 252 LLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 11/113 (9%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
              +  LG T    ++ E+AV  Y +A++          N   S   L  ++ A+     
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310

Query: 149 AIKIDPHYAKAYGR-----------MGLAYTQMNDYKAALEAYTKAAELDPND 190
           A+ +        G            + LA + +    A   A  +        
Sbjct: 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 16/117 (13%)

Query: 110 IEYSKAIDCDNSNP------------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-- 155
           +E+ +A     S+             +   +  A         L         + +    
Sbjct: 1   MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60

Query: 156 --YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                     GL   Q  D   A+  +  A + DP        +    +       A
Sbjct: 61  LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
           +         +     N +       +  + + +  AL   + A+  DP Y+ A+  +G 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 166 AYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNL 204
                 D   A +A+        +  D      +Q  +  L
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 9/62 (14%), Positives = 19/62 (30%)

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
            +            +G  Y +   + AAL     A + DP   +    +   +    + +
Sbjct: 11  MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70

Query: 209 SA 210
            A
Sbjct: 71  GA 72

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 77.7 bits (192), Expect = 7e-17
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            + Y  LG   +Q+   EQA +   KA++ D S+   +   A         KLA  + + 
Sbjct: 37  RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK 96

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA---NNMQAAMSNLN 205
           A+  D   A+     G    +   Y+ A +   +A++ D   P  +    N+      + 
Sbjct: 97  ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMK 155

Query: 206 NSSSA 210
             + A
Sbjct: 156 KPAQA 160

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 19/111 (17%), Positives = 38/111 (34%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
           + +  + +  ++ +             K     +     Y        +  N + A    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPL 60

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
           + A++IDP  A A+  + + +    + K A E Y KA   D  +    NN 
Sbjct: 61  RKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 19/103 (18%), Positives = 36/103 (34%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           +  ++NLG  ++Q  KP QA   + K++  + + P      A    K + Y  A +   +
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
             +     A++            D   A     +   L P   
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 74.6 bits (184), Expect = 9e-16
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 4/125 (3%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALRD 145
           A    N G    +Q + E+A     +A   D   P     + N    + ++K    A   
Sbjct: 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEY 163

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
            + +++++ +       M     +  +Y  A + Y   A+    +               
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223

Query: 206 NSSSA 210
           +  +A
Sbjct: 224 DRDTA 228

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 79.7 bits (196), Expect = 1e-16
 Identities = 13/122 (10%), Positives = 29/122 (23%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                +        +  ++ +    +A        V   +       L+  +  L     
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ 285

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A  + P    A    G     +   +  L    +A  L P+  +   +       L    
Sbjct: 286 AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345

Query: 209 SA 210
             
Sbjct: 346 RL 347

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 77.0 bits (189), Expect = 8e-16
 Identities = 20/179 (11%), Positives = 46/179 (25%), Gaps = 8/179 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + P  +   ++ D      L     +L          P +        
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDG-GKQALETMQRLLPVLCQAHGLPPDQ-----VVA 262

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             +        +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + P    A          +   +  L    +A  L P+  +   +       L      
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 381

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 8/169 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + PD +   ++        L     +L         +P +        
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIG-GKQALETVQRLLPVLCQAHGLTPDQ-----VVA 296

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             + G      +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
           + P    A    G     +   +  L    +A  L P+  +   +    
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK 405

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.9 bits (181), Expect = 8e-15
 Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 8/173 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + PD +   ++        L     +L         +  +        
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTQVQ-----VVA 601

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             +        +  ++ +    +A     +  V   +       L+  +  L     A  
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
           + P    A    G     +   +  L    +A  L     +   +       L
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 14/122 (11%), Positives = 28/122 (22%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                +        +  +Q +    +A        V   +       L   +  L     
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQ 522

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A  + P    A    G     +   +  L    +A  L P+  +   +       L    
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582

Query: 209 SA 210
             
Sbjct: 583 RL 584

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 72.4 bits (177), Expect = 3e-14
 Identities = 15/179 (8%), Positives = 44/179 (24%), Gaps = 6/179 (3%)

Query: 33  IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEK 91
           ++  +  LC+A+ +    +   ++           +  +         +P +        
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ-----VVA 635

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             +        +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +      A          +   +  L    +A  L P+  +   +       L      
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 754

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 19/179 (10%), Positives = 46/179 (25%), Gaps = 7/179 (3%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKY 92
           +  +  LC+A+ + PD +   ++ D         +  +         +P +         
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAI 365

Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
            + G      +  ++ +    +A        V   +       L+  +  L     A  +
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGL 424

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211
            P    A          +   +  L    +   L P   +   +       L       
Sbjct: 425 TPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLL 483

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 12/122 (9%), Positives = 27/122 (22%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                + G      +  ++ +    +A        V   +       L+  +  L     
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A  +      A          +   +  L    +A  L P   +   +       L    
Sbjct: 591 AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQ 650

Query: 209 SA 210
             
Sbjct: 651 RL 652

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.5 bits (167), Expect = 6e-13
 Identities = 13/119 (10%), Positives = 29/119 (24%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             + G      +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + P    A          +   +  L    +A  L P+  +   +       L      
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.6 bits (162), Expect = 3e-12
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 9/173 (5%)

Query: 31  EGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIE 88
           E ++  +  LC+A+ + P  +   ++ D      L     +L         +P +     
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPDQ----- 666

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                + G      +  ++ +    +A        V   +       L+  +  L     
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-YANNMQAA 200
           A  + P    A    G     +   +  L    +A  L P   +  A+N+   
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.4 bits (151), Expect = 6e-11
 Identities = 13/123 (10%), Positives = 28/123 (22%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +  K    G     +             ++   +  V   +       L+  +  L    
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
            A  + P    A          +   +  L    +A  L P+  +   +       L   
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276

Query: 208 SSA 210
              
Sbjct: 277 QRL 279

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 8/179 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ + PD +   ++        L     +L         +  +        
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTQEQ-----VVA 703

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             +        +  ++ +    +A        V   +       L+  +  L     A  
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + P    A          +   +  L    +   L     +   +       L      
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRL 822

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 11/105 (10%), Positives = 20/105 (19%)

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
             A       +  D    V    R         +          + + P    A      
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200

Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
               +   +  L    +A  L P   +   +       L      
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 17/173 (9%), Positives = 45/173 (26%), Gaps = 8/173 (4%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
           +  +  LC+A+ +  + +  A   +      L     +L         +P +        
Sbjct: 684 QRLLPVLCQAHGLTQEQVV-AIASNNGGKQALETVQRLLPVLCQAHGLTPDQ-----VVA 737

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
             + G      +  ++ +    +A     +  V   +       L+  +  L        
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHG 797

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
           +      A          +   +  L    +A  L  +  +   +       L
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQAL 850

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 13/178 (7%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKY 92
           +  +  LC+A+ + PD +   ++           +  +         +P +         
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ-----VVAI 772

Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
            +        +  ++ +    +      +  V   +       L+  +  L     A  +
Sbjct: 773 ASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGL 832

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                 A              K ALE   +   +   D     +   A+++      A
Sbjct: 833 TQDQVVAIASNIGG-------KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQA 883

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 5/126 (3%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           +     L    M+     QA      A+  D  N + +  RA     LK    A    + 
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 149 AIKIDPHYAKAYGRMGLA-YTQMNDYKAALEAYTKAAELDPNDPLYA---NNMQAAMSNL 204
           A+ I P  A+     G     ++N    ++  + KA   DP  P       N     +  
Sbjct: 68  ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQ 126

Query: 205 NNSSSA 210
                A
Sbjct: 127 GQFGLA 132

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 3/125 (2%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAAS-NNKLKNYKLALRDCQ 147
              +             ++A   + +A+     +     N       +L     ++    
Sbjct: 42  ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101

Query: 148 IAIK--IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
            A+     P    A    G+   +   +  A     ++    P  P     +        
Sbjct: 102 KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161

Query: 206 NSSSA 210
               A
Sbjct: 162 QLGDA 166

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 89  AEKYKNLGNTAMQQ-DKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALR 144
           AE   N G     + ++P +++  + KA+  D + P       N+   + K   + LA  
Sbjct: 76  AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEA 134

Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
             + ++   P +  A+  +            A   + K         
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 3/115 (2%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                N G  + +Q +   A     +++      P  +   A +         A    + 
Sbjct: 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
                         + L +        A  AY   A+L  N P Y+  +Q  ++ 
Sbjct: 173 YQSRVEVLQADD--LLLGWKIAKALGNAQAAYEYEAQLQANFP-YSEELQTVLTG 224

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
              +    ++ + Y +  DY+ A  +   A + DP + L           L  +  A
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 75.4 bits (185), Expect = 2e-15
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 78  NFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137
           ++  T  V+    K +++      Q++ E+ + +  + +            +  + N   
Sbjct: 63  SYFETHSVEDAGRKQQDV------QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP 116

Query: 138 NY-KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
           +Y   A      A+K++P   +A+ ++G  Y +  D  +A   ++ A     N      N
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL-QN 175

Query: 197 MQAAMSNLNNSSSA 210
           +   +  L   S  
Sbjct: 176 LSMVLRQLQTDSGD 189

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 21/175 (12%), Positives = 53/175 (30%), Gaps = 18/175 (10%)

Query: 36  AVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNL 95
            + C   +Y    +++ A     +   ++   ++ LQ    +        ++EA+     
Sbjct: 56  RLYCFRDSYFETHSVEDAGRKQQDVQEEM---EKTLQQMEEV----LGSAQVEAQALMLK 108

Query: 96  GNT-AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
           G    +  D   +A +  SKA+  +      +        K  +   A      A+    
Sbjct: 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168

Query: 155 HYAKAYGRMGLAYTQM---------NDYKAALEAYTKAAELDPNDPLYANNMQAA 200
           +   +   + +   Q+              ++     A ++D  D      +  A
Sbjct: 169 NK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 89  AEKYKNLGNTAMQ--------QDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLK 137
              +  LGN  +             +QA+  Y++A   D         + NRA  +   +
Sbjct: 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272

Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
           +Y  AL     A  +DP + +   R       ++   + LE+  K 
Sbjct: 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 74.2 bits (182), Expect = 6e-15
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 27/232 (11%)

Query: 6   EDIITSVITFLRKELLRDTLN-----AESKEGIEVAVECLCKAYDI-----PDNIDPASN 55
           ED +     F  +E      N        K   E A+ECL KA ++      D  +  S 
Sbjct: 35  EDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSL 94

Query: 56  VDIESLFQLYYK----DEVLQWYSNIN----FSPTEEVKIEAEKYKNLGNTAMQ--QDKP 105
           V   +   +YY      +V  +   +        +       E     G T ++   ++ 
Sbjct: 95  VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQN 154

Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK---LALRDCQIAIKIDPHYAKAYGR 162
           E+A + + KA++    NP +    A ++ +L N+     A+   + AI+++P        
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214

Query: 163 MGLAYTQM----NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           + L   +M     +     +   +A E  P       +        +    A
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA 266

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 73.8 bits (181), Expect = 7e-15
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 89  AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRA----ASNNKLKNYKL 141
            E    L   + + D     + A+    +AI  +  N       A        + +    
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231

Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
             +  + A++  P            Y + ++   A+E   KA E  PN+      +
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 23/203 (11%), Positives = 62/203 (30%), Gaps = 33/203 (16%)

Query: 28  ESKEGIEVAVECLCKAYDI-PDNIDPASN---VDIESLFQLYYKDEVLQWYSN-INFSPT 82
           ++    + A++ L +A  + PDN            +   +   + E  +     +  +P 
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRA------------ 130
                  +  ++      ++D+P++A+    KA++   +N   +C               
Sbjct: 246 V-----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 131 -------ASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
                       L+    A+   + A + + +  +    +   +   + Y+ A   + K 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360

Query: 184 AELDPNDPLYANNMQAAMSNLNN 206
              +          Q       N
Sbjct: 361 FSKELTP----VAKQLLHLRYGN 379

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 32/214 (14%)

Query: 24  TLNAESKEGIEVAVECLCKAYDI-PDNIDPASN--VDIESLFQLYYKDEVLQWYSN-INF 79
           T         E A  C  KA +  P N +  S   +    L         +      I  
Sbjct: 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204

Query: 80  SPTEEVKIEAEKYKNLGNT----AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK 135
           +P             L         + ++  +      +A++          + A    +
Sbjct: 205 NPDN-----QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 136 LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM-------------------NDYKAA 176
                 A+   + A++  P+ A  + ++G  Y                           A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319

Query: 177 LEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +    KA E + N     + + +  +  +    A
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEA 353

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 28/137 (20%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAI----DCDNSNPVYYCNRAASNNKLKNYKLALR 144
                 L +     D+ E+A   + K             ++         ++K    A+ 
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393

Query: 145 DCQIAIKI------------------------DPHYAKAYGRMGLAYTQMNDYKAALEAY 180
                +KI                        +   ++A   +          + A E  
Sbjct: 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453

Query: 181 TKAAELDPNDPLYANNM 197
            +  E     P  ++  
Sbjct: 454 ERGLESGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 4/118 (3%)

Query: 86  KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD 145
           ++   +   +       +    AV    KA + +++        A+ +     Y+ A   
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356

Query: 146 CQIAIKIDPHYAKA---YGRMG-LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
            Q     +         + R G     QM     A+  + +  +++            
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 13/103 (12%), Positives = 36/103 (34%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
           +  E     G + ++     +A + +      +      + +   +  + +   LA+   
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
             A  +DP     +  + +++T  ++  AAL +        P 
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
               S  KL N   A    +   + +P   +A+  +GL   +      A+ A   A  LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 188 PNDPLYANNMQAAMSNLNNSSSA 210
           P D      +  + +N +N+++A
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAA 104

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
           +P      A  + K  N   AL   +  ++ DP Y   Y  +G  Y +++    A++ Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 182 KAAELDPN--DPLYANNMQAAMSNL 204
           +  E+          + +Q A    
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKA 90

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           DP        +   + + ++   AL  + +  E DP+      ++      L+ +  A
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 67.2 bits (164), Expect = 9e-14
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL---ALRD 145
           +E++  LG   + Q+    +++ Y +A+     N   Y   A       +  +       
Sbjct: 44  SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
              A+ +D +   A   +        +Y  A+E + K  +L+         +++
Sbjct: 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 3/112 (2%)

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
           + V+ E ++ ++  +    Q  PE  +      I  +  N   +           +Y  +
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK---AALEAYTKAAELDPNDP 191
           L   + A+++    A+ Y  +                     KA  LD N+ 
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 15/79 (18%), Positives = 32/79 (40%)

Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
           +        +N +  L+  Q  I+ +P  ++ +  +G  Y   NDY  +L AY +A +L 
Sbjct: 15  DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74

Query: 188 PNDPLYANNMQAAMSNLNN 206
             +      +   +    +
Sbjct: 75  GENAELYAALATVLYYQAS 93

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 62.4 bits (153), Expect = 8e-13
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
           + N   +  K  +Y  A+   Q A+++DP+ A+A+  +G AY +  DY  A+E Y KA E
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 186 LDPNDPLYANNMQAAMSNL 204
           LDPN+     N+  A    
Sbjct: 72  LDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 60.1 bits (147), Expect = 6e-12
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE + NLGN   +Q   ++A+  Y KA++ D +N   + N   +  K  +Y  A+   Q 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 149 AIKIDPHYAKAYGRMGLAY 167
           A+++DP+ A+A   +G A 
Sbjct: 69  ALELDPNNAEAKQNLGNAK 87

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.9 bits (105), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 152 IDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +DP   A+A+  +G AY +  DY  A+E Y KA ELDPN+     N+  A     +   A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
                     + + AL+  +  ++ +P    +AY  MG AY ++ D++ AL  Y  A EL
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 187 DPNDP-LYANNMQAAMSNLNN 206
           +P+ P L A  M   + N  N
Sbjct: 65  NPDSPALQARKMVMDILNFYN 85

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-YCNRAASNNKLKNYKLALRDCQIAIKI 152
                 + Q   E A+    + +  +       Y     +  KL +++ AL + Q AI++
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
           +P       R  +           L  Y K  
Sbjct: 65  NPDSPALQARKMVM--------DILNFYNKDM 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 104 KPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY 160
              QAV  Y KAI            Y    ++   L  Y+ A       +K  P++    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
               +    +  Y+  +E   K      +D    +  QA
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 136 LKNYKLALRDCQIAIKI---DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
           L     A+   + AI         A+ Y  +G  +  + +Y+ A        +  PN   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 193 YANNMQAAMSNLNNSSSA 210
                   + NL      
Sbjct: 63  LRVFYAMVLYNLGRYEQG 80

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           AE Y  LG+T     +  +A    +  +    ++       A     L  Y+  +     
Sbjct: 27  AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
            I                   +  YK A+  Y  A +LD
Sbjct: 87  IIAETSDDE-----------TIQSYKQAILFY--ADKLD 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 7e-11
 Identities = 58/370 (15%), Positives = 103/370 (27%), Gaps = 111/370 (30%)

Query: 6   EDIITSVITFLRKELLRDTLNAESKEGIEVAVE-CLCKAYDI------PDNIDPASNVDI 58
           + II S         L  TL ++ +E ++  VE  L   Y         +   P+    +
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 59  ESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEY------ 112
                   +D +  +  N  F+    V    + Y  L   A+ + +P + V+        
Sbjct: 112 YI----EQRDRL--YNDNQVFAK-YNVSRL-QPYLKL-RQALLELRPAKNVLIDGVLGSG 162

Query: 113 ----------SKAIDCDNSNPVYY-----CNRAASN----NKL-----KNYKLALRDCQI 148
                     S  + C     +++     CN   +      KL      N+  +  D   
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSS 221

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL---DPNDP--LYANNMQAAMSN 203
            IK+  H  +A  R  L       Y+  L        L   +  +     A N+   +  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKP---YENCL--------LVLLNVQNAKAWNAFNLSCKI-- 268

Query: 204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE-----LFAN---------PGQQAT 249
           L  +        V   LS  +T  +S               L            P ++  
Sbjct: 269 LLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVL 323

Query: 250 AT-------------DGSNT-------GIQALLNASQQIAAQLEQRNPELVEQIFQQFGP 289
            T             DG  T           L      I + L    P    ++F +   
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---IESSLNVLEPAEYRKMFDRL-- 378

Query: 290 ALNNFKSNVP 299
           ++  F  +  
Sbjct: 379 SV--FPPSAH 386

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 50/345 (14%), Positives = 115/345 (33%), Gaps = 102/345 (29%)

Query: 8   IIT---SVITFL--------RKELLRDTLNAESKEGIEVAVECL-CKAYDIP---DNIDP 52
           + T    V  FL          +    TL     E   + ++ L C+  D+P      +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 53  ASNVDIESLFQLYYKDEVLQW--YSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVI 110
                + S+     +D +  W  + ++N      + IE+     L     ++        
Sbjct: 328 RR---L-SIIAESIRDGLATWDNWKHVNCDKLTTI-IES-SLNVLEPAEYRK-------- 373

Query: 111 EYSK-AIDCDNSN-P-----VYYCNRAASN-----NKLKNYKLALRD-CQIAIKIDPHYA 157
            + + ++   +++ P     + + +   S+     NKL  Y L  +   +  I I   Y 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY- 432

Query: 158 KAYGRMGLAYTQMNDY---KAALEAYTKAAELDPND--PLYANN---------MQAA--- 200
                + L     N+Y   ++ ++ Y      D +D  P Y +          ++     
Sbjct: 433 -----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 201 -----MSNL------------NNSSSASGSGGVFPGLSEMS------TKVLSDPSIQQVF 237
                   +            ++S++ + SG +   L ++           +DP  +++ 
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERLV 545

Query: 238 GEL--F-ANPGQQATATDGSNTGIQ-ALLNASQQI---AAQLEQR 275
             +  F     +    +  ++  ++ AL+   + I   A +  QR
Sbjct: 546 NAILDFLPKIEENLICSKYTDL-LRIALMAEDEAIFEEAHKQVQR 589

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 61.3 bits (148), Expect = 8e-11
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166
              I+    +   N+  + Y  +A S         + +     I ++  +   Y  +G  
Sbjct: 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKV 319

Query: 167 YTQMNDYKAALEAYTKAAELDPNDPLY 193
           Y      + A +AY  A  L P     
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGANTL 346

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 9/119 (7%), Positives = 28/119 (23%), Gaps = 14/119 (11%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
            +A  Y   G+         +A     + +            +A  +    +        
Sbjct: 201 YQAHDYLLHGD----DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256

Query: 147 Q----------IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
                      + +    + +  Y    ++         + +A     +L+ +   Y  
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 8/166 (4%)

Query: 22  RDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFS 80
            D L     + +  A E L +     P+     +   +  + +        +  + +N  
Sbjct: 204 HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263

Query: 81  PTEEVKI-----EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK 135
               V +      +  Y+    +A+ + K +++    +  ID + S  + Y         
Sbjct: 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322

Query: 136 LKNYKLALRDCQIAIKIDPHYAKAY-GRMGLAYTQMNDYKAALEAY 180
               + A      A  + P     Y    G+  T +      L+ +
Sbjct: 323 KGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-------KLKNYK 140
           +AE +  +        +   ++    +A+D   ++P+Y      S           K+Y 
Sbjct: 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD 199

Query: 141 LALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
            AL   + A+++      D   A +   +  +Y +  D + A+E + KAA++        
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE--KVP 257

Query: 195 NNMQAAMSNL 204
           + +   +  L
Sbjct: 258 DLLPKVLFGL 267

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 66  YKDEVLQWYSNINFSPTEEV--KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP 123
            K EV Q    +       +   +   +++ + +  ++  K        ++ ++   +  
Sbjct: 34  LKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQ 92

Query: 124 V---------YYCNRAASNNKLKNYKLALRDCQIAIKI------DPHYAKAYGRMGLAYT 168
                         R       K Y  A+   + A K       D   A+ + ++  AY 
Sbjct: 93  KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY 152

Query: 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
            M     ++    +A ++  N PLY+     ++  +
Sbjct: 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 14/121 (11%), Positives = 36/121 (29%), Gaps = 13/121 (10%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAV------IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL 141
             +    +          ++A+      +E +  I  D    +   N A S ++  + ++
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240

Query: 142 ALRDCQIAIKI-----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL--DPNDPLYA 194
           A+   Q A K+          K    +     +    + A +   +  +     +   Y 
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300

Query: 195 N 195
            
Sbjct: 301 E 301

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 9/102 (8%), Positives = 25/102 (24%), Gaps = 7/102 (6%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
              L  T  +  + ++A     + +D     +  +Y         +    +  R     +
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323

Query: 151 KI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
                     +           +     ++ A   Y K  + 
Sbjct: 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 1/123 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQ 147
            + Y        + ++ E+A      AI+ + +N   +  R      L K+    +    
Sbjct: 97  RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 156

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
             I+  P   + +    +    + D    LE        D  +     + Q  +      
Sbjct: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216

Query: 208 SSA 210
            + 
Sbjct: 217 DNE 219

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 13/110 (11%), Positives = 32/110 (29%)

Query: 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161
           Q    + +   +  I+    N   + +R      L++    L      +  D     A+ 
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204

Query: 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211
                  +   +   L+   +  + D  +    N     +SN    +  +
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 58.2 bits (140), Expect = 8e-10
 Identities = 14/125 (11%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            + + +          P Q +   +  ++ D  N   + +R     + K +   L+    
Sbjct: 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDY------KAALEAYTKAAELDPNDPLYANNMQAAMS 202
            +K D      + +     +    Y      +  ++   +  +L P++    N ++  + 
Sbjct: 226 LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285

Query: 203 NLNNS 207
           +   S
Sbjct: 286 DRGLS 290

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 7/106 (6%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL------ALRD 145
           +++      +    +  +    + +  D  N   +  R    +    Y         ++ 
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262

Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
               IK+ PH   A+  +                  +  +L P+  
Sbjct: 263 TLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS 307

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 2/119 (1%)

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL--KNYKLALRDCQIAIK 151
                 ++ D+ + A  E  K  D D    +     A  +     +  + A    Q    
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
                          +     ++AA     +A + D   P    N+     +L      
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 10/151 (6%)

Query: 47  PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106
           P+           +         VL      +    + V++ AE   +            
Sbjct: 30  PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIV---- 85

Query: 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166
            A ++   +   D +N  +    A+     +N   ALR       ++             
Sbjct: 86  -AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ-----I 139

Query: 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
             +++    A +   K  + D +  L     
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLAT 170

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-------KLKNYK 140
           +AE +  +  +     +   ++    +A +    +  Y       ++        LK Y+
Sbjct: 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE 201

Query: 141 LALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
            A+   Q A  +           +    +GL     + Y+ A+  + +A  +
Sbjct: 202 DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 23/194 (11%)

Query: 18  KELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIE-SLFQLYYKDEVLQWYSN 76
            E + +      +  I  A     +     D ++   ++ +  SL +  +   +L++   
Sbjct: 13  GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHN-LMLEYLEP 71

Query: 77  INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
           +     EE    ++    +     +     +                 +   R       
Sbjct: 72  LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYY---------------FNFFRGMYELDQ 116

Query: 137 KNYKLALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
           + Y  A++  + A             A+ + +M  +Y  M     +++   +A E+    
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176

Query: 191 PLYANNMQAAMSNL 204
             Y   +    S  
Sbjct: 177 EAYNIRLLQCHSLF 190

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLA 142
            + +       +   + E A+  + KA     +            N     N    Y+ A
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

Query: 143 LRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           +   + AI +       P   +AY  +   + ++     A E ++K    
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 7/106 (6%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDC 146
             + Y  +     +  K ++A   +SK +     +  V Y +       L          
Sbjct: 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322

Query: 147 QIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           Q                     +   Y +  +++ A   + K  ++
Sbjct: 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 20/171 (11%), Positives = 41/171 (23%), Gaps = 19/171 (11%)

Query: 36  AVECLCKAYDIPDNIDPASNV--DIESLFQLYYK----DEVLQWYSN-INFSPTEEVKIE 88
           A +   +  +   N     +     E    +        E +Q+                
Sbjct: 55  AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC---DNSNPV---YYCNRAASNNKLKNYKLA 142
           A    +     M+     +AV  Y +A      +             +    + + +  A
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174

Query: 143 LRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
               Q    +       P   K      L      DY AA +   ++  + 
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 11/119 (9%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYKLA 142
            A+ ++  G       +  +AV    KA                 +RA    +  +   A
Sbjct: 75  AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKA 134

Query: 143 LRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
           +   Q A  +          A+  G+      +   +  A  +  K   +      Y  
Sbjct: 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 28/98 (28%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A +Y           + EQA   Y +  +                               
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEA----------------------------HA 67

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
             +   H AKA+ + G+    +     A++   KA+ +
Sbjct: 68  NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 26/133 (19%)

Query: 94  NLGNTAMQQDKP-----EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK-------- 140
            LG+   + +       EQ   +       +  +            +L  +         
Sbjct: 2   PLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61

Query: 141 --LALRDCQIAIKIDPHYAKAYGRMGLAYTQM-----------NDYKAALEAYTKAAELD 187
              A+   + A+ IDP   +A   +G AYT             +++  A + + +A +  
Sbjct: 62  IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121

Query: 188 PNDPLYANNMQAA 200
           P++  Y  +++  
Sbjct: 122 PDNTHYLKSLEMT 134

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 15/130 (11%)

Query: 64  LYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP 123
               D   Q  S  +   +        +    G            V  +  AI     + 
Sbjct: 28  TNSHDGNSQQGSGSDGGSSM-----CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82

Query: 124 ----VYYCNRAASNNKLKNYKLAL----RDCQIAIKID--PHYAKAYGRMGLAYTQMNDY 173
                 Y     +   L +Y  A+     D  +A  ++     AK+ G +G     M  +
Sbjct: 83  RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142

Query: 174 KAALEAYTKA 183
             A     + 
Sbjct: 143 DEAAICCERH 152

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
              LG+     +  +    +     D  +S  +             + +  +   Q AI+
Sbjct: 18  SLGLGSGGGGTNSHDGN-SQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ 76

Query: 152 I----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
                    +  Y ++G AY  + DY  A++ +   
Sbjct: 77  AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAID-----CDNSNPVY-YCNRAASNNKLKNYKL 141
           E     NLGN+ +   + E A   Y + +       +         +   +   L  +  
Sbjct: 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321

Query: 142 ALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           A+      + I          A+A   +G A++ +  ++ AL+   +  +L
Sbjct: 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 15/98 (15%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           E     NLGN    + K            D   +       RA     ++ Y+  L   +
Sbjct: 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL-----TRA-----VEFYQENL---K 211

Query: 148 IAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
           +   +       +A G +G  Y  + D++AA+E + + 
Sbjct: 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 32/101 (31%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +     NLGNT            ++  AI+                     ++  L   +
Sbjct: 222 QGRACGNLGNTYYLLG-------DFQAAIEH--------------------HQERL---R 251

Query: 148 IAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           IA +        +A   +G ++  +  ++ A E Y +   L
Sbjct: 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----VYYCNRAASNNKLKNYKLAL 143
              +    G    +       V  +  A+     +       Y     +   L +Y  AL
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 144 RDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
                 + +          AKA G +G     + ++  A+    + 
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLKNY 139
           E   Y NLGN  +   + E A   Y K +       +           +   +   L++Y
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDY 279

Query: 140 KLALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           + A+      + I           +A   +G AYT + ++  A+    K  E+
Sbjct: 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           EA    NLGN    + K              ++         A     +  Y+  L    
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL--QAA-----VDLYEENL---S 171

Query: 148 IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKA 183
           +   +       +A+G +G  +  + +++ A+ A+ + 
Sbjct: 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEY-------SKAIDCDNSNPVYYCNRAASNNKLKNYK 140
           +   + NLGNT         A +         +K      +    Y N   +   L  ++
Sbjct: 182 QGRAFGNLGNTHYLLGNFRDA-VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240

Query: 141 LALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
            A    +  + +          A++   +G  YT + DY+ A++ + K 
Sbjct: 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----VYYCNRAASNNKLKNYKLAL 143
              +    G    +       V  +  A+     +       Y     +   L +Y  AL
Sbjct: 8   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67

Query: 144 RDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
                 + +          AKA G +G     + ++  A+    + 
Sbjct: 68  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLKNY 139
           E   Y NLGN  +   + E A   Y K +       +           +   +   L++Y
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDY 283

Query: 140 KLALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
           + A+      + I           +A   +G AYT + ++  A+    K  E+
Sbjct: 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEY-------SKAIDCDNSNPVYYCNRAASNNKLKNYK 140
           +   + NLGNT         A +         +K      +    Y N   +   L  ++
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDA-VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244

Query: 141 LALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
            A    +  + +          A++   +G  YT + DY+ A++ + K 
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 12/98 (12%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           EA    NLGN    + K              +          A     +  Y+  L    
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL--QAA-----VDFYEENL---S 175

Query: 148 IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKA 183
           +   +       +A+G +G  +  + +++ A+ A+ + 
Sbjct: 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPV--YYCNRAASNNKLKNYK 140
           E      +G         + A   + +  +      ++           A       +  
Sbjct: 65  EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124

Query: 141 LALRDCQ----IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
            A ++ +     A + D     A A+  +G    Q  +   A + + +A ++
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 32/101 (31%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            +     LG      D+ ++A                             +++      Q
Sbjct: 25  ASGARFMLGYVYAFMDRFDEA---------------------------RASFQALQ---Q 54

Query: 148 IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
            A K   H    +A  ++G+      ++ AA   + +  EL
Sbjct: 55  QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPVY-YCNRAASNNKLKNYKL 141
           +   + NLGNT         AVI + + +       D +     Y N   +   L  ++ 
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET 67

Query: 142 ALRDCQ----IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKA 183
           A    +    +A ++      A++   +G  YT + DY+ A++ + K 
Sbjct: 68  ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLKNY 139
           E   Y NLGN  +   + E A   Y K +       +           +   +   L++Y
Sbjct: 48  ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDY 105

Query: 140 KLALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
           + A+      + I           +A   +G AYT + ++  A+    K 
Sbjct: 106 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 24/177 (13%)

Query: 36  AVECLCKAYDI---PDNIDPASNVDIESLFQLYYK----DEVLQWYSNIN--FSPTEEVK 86
           A +   KA D      N D A N      ++ +         +    N    F+   + +
Sbjct: 56  AGDSFLKAADYQKKAGNEDEAGNT-YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114

Query: 87  IEAEKYKNLGNTAMQQ-DKPEQAVIEYSKAIDC---DNSNPVY---YCNRAASNNKLKNY 139
             A     LG           +A+  Y  A +    D S  +    +   A        Y
Sbjct: 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174

Query: 140 KLALRDCQIAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
             A       IK               + + GL      D  AA     +    DPN
Sbjct: 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 13/131 (9%)

Query: 73  WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYY 126
           +    + S + + +  A+           + +   A   + KA D              Y
Sbjct: 21  FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY 80

Query: 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMG-LAYTQMNDYKAALEA 179
                      N   A+   + AI+I  H       A     +G +    ++DY  A++ 
Sbjct: 81  VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140

Query: 180 YTKAAELDPND 190
           Y  A E    D
Sbjct: 141 YELAGEWYAQD 151

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 13/129 (10%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-----YCNRAASN--NKLKNYKL 141
              Y               AV     AI        +     +         N L +Y  
Sbjct: 77  GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136

Query: 142 ALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
           A+   ++A +            K + +          Y  A + Y+K  +    + L   
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196

Query: 196 NMQAAMSNL 204
           +++      
Sbjct: 197 SLKDYFLKK 205

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 17/149 (11%), Positives = 42/149 (28%), Gaps = 23/149 (15%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------------VYYCNRAASNNK 135
            A    +     +   + ++A     +A++  ++ P              +   A +   
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69

Query: 136 LKNYKLALRDCQIAIKIDPH-----------YAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
           L+++  AL     A+                +  A     LA   +     A+  + K  
Sbjct: 70  LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129

Query: 185 ELDPNDPLYANNMQAAMSNLNNSSSASGS 213
           E+           +  M    +  +  G+
Sbjct: 130 EMIEERKGETPGKERMMEVAIDRIAQLGA 158

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP----LYANNM 197
           AL     AIK  P  A              D++ A E   ++ +L P          + +
Sbjct: 16  ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75

Query: 198 QAAM 201
           +AA 
Sbjct: 76  KAAQ 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.87
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.87
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.86
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.84
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.81
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.81
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.8
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.79
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.79
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.78
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.77
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.76
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.76
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.76
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.76
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.75
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.75
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.75
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.74
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.73
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.71
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.7
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.7
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.69
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.69
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.68
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.67
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.65
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.65
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.65
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.64
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.64
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.64
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.6
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.59
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.57
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.56
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.56
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.56
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.55
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.51
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.51
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.49
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.47
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.46
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.45
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.45
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.44
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.44
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.44
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.43
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.43
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.38
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.38
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.36
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.28
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.26
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.17
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.16
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.15
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.11
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.07
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.05
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.97
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.95
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.92
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.86
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.8
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.79
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.65
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.64
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.61
4asv_A	92	Small glutamine-rich tetratricopeptide repeat-CON	98.38
4gof_A	52	Small glutamine-rich tetratricopeptide repeat-CON	98.33
2lxb_A	74	Small glutamine-rich tetratricopeptide repeat-CON	98.22
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.12
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.03
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.01
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.93
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.74
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.73
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.65
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.65
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.47
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.46
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.13
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.09
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.8
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.56
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.47
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.43
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.6
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.99
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.74
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.11
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.67
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.61
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.51
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.18
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.75
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.49
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	90.21
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.07
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.99
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.96
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.65
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.36
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.81
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	85.86
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	83.74
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	83.05
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	82.53
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	81.18
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	80.65

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=1.1e-23  Score=172.13  Aligned_cols=174  Identities=13%  Similarity=0.102  Sum_probs=130.5

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+.+|+++++.+|   .+                                   +.+++.+|.++...|++
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~p---~~-----------------------------------~~a~~~lg~~~~~~g~~   55 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERALKENP---QD-----------------------------------PEALYWLARTQLKLGLV   55 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSS---SC-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHHHHcCCH
Confidence            34468899999999999999999   44                                   33567777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-----------KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK  174 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  174 (314)
                      ++|+..|+++++++|+++.++.++|.++...           |++++|+..|+++++++|+++.+++.+|.++...|+++
T Consensus        56 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~  135 (217)
T 2pl2_A           56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD  135 (217)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence            7777777777777777777777777777777           77777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       175 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +|+..|+++++++ +++.++.++|.++...|++++|+      ..+..+.+..|.++.++..++.++...
T Consensus       136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          136 KAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL------AQYAKALEQAPKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            7777777777777 77777777777777777777776      677777777777777777776665554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.90  E-value=6.8e-23  Score=157.58  Aligned_cols=146  Identities=11%  Similarity=0.025  Sum_probs=131.8

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .|.....+|++++|+..|++++..+|   +                                   .+..++.+|.+|+..
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p---~-----------------------------------~~~~~~~la~~y~~~   44 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR---Q-----------------------------------KSIKGFYFAKLYYEA   44 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH---H-----------------------------------HHTTHHHHHHHHHHT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc---c-----------------------------------cHHHHHHHHHHHHHc
Confidence            45566789999999999999988877   2                                   244688999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA-YT  181 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~  181 (314)
                      |+|++|+.+|+++++++|+++.+|+++|.+|...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++
T Consensus        45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~  124 (150)
T 4ga2_A           45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE  124 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887765 59


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      ++++++|+++.++..++.++...|+
T Consensus       125 ~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          125 RAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999888775

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.90  E-value=2.1e-22  Score=150.08  Aligned_cols=119  Identities=28%  Similarity=0.441  Sum_probs=115.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ..+|..+..+..+|+.+++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM  201 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  201 (314)
                      +|.++..+|++++|+..|+++++++|++..++..++.|+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999998874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=2.3e-22  Score=159.51  Aligned_cols=163  Identities=21%  Similarity=0.242  Sum_probs=148.2

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |..+..+|++++|+++|+++++++|   .+                                   +.++..+|.++...|
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p---~~-----------------------------------~~~~~~la~~~~~~~   53 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADP---NN-----------------------------------VETLLKLGKTYMDIG   53 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHHHHCC
Confidence            4445679999999999999999999   33                                   347899999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ++++|+..+++++..+|.++.++..+|.++...++++.|+..+.+++.++|.+..++..+|.++..+|++++|+..|+++
T Consensus        54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  133 (184)
T 3vtx_A           54 LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT  133 (184)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD  230 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  230 (314)
                      ++++|+++.++.++|.++..+|++++|+      ..+..+++.-|.+
T Consensus       134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~p~~  174 (184)
T 3vtx_A          134 ISIKPGFIRAYQSIGLAYEGKGLRDEAV------KYFKKALEKEEKK  174 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTHHH
T ss_pred             HHhcchhhhHHHHHHHHHHHCCCHHHHH------HHHHHHHhCCccC
Confidence            9999999999999999999999999998      7776666654443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.89  E-value=2.3e-22  Score=190.73  Aligned_cols=163  Identities=21%  Similarity=0.234  Sum_probs=150.3

Q ss_pred             ccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHH
Q psy4130          20 LLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTA   99 (314)
Q Consensus        20 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   99 (314)
                      +.+.|..+..+|++++|+++|+++++++|   +.                                   +.++.++|.++
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P---~~-----------------------------------~~a~~nLg~~l   53 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKALEVFP---EF-----------------------------------AAAHSNLASVL   53 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CC-----------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHH
Confidence            33445556679999999999999999999   33                                   34799999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         100 MQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       100 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      ...|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+..
T Consensus        54 ~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~  133 (723)
T 4gyw_A           54 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS  133 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      |+++++++|++..++.+++.++..+|++++|.      ..+..+.+.
T Consensus       134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~------~~~~kal~l  174 (723)
T 4gyw_A          134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD------ERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH------HHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHhhhhhHHHhcccHHHHH------HHHHHHHHh
Confidence            99999999999999999999999999999997      655555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=3.3e-22  Score=176.69  Aligned_cols=173  Identities=13%  Similarity=0.035  Sum_probs=150.0

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC-HH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK-PE  106 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~  106 (314)
                      ...|++++|+.+|++++.++|   .+                                   ..+|+.+|.++...|+ ++
T Consensus       108 ~~~g~~~~Al~~~~~al~l~P---~~-----------------------------------~~a~~~~g~~l~~~g~d~~  149 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELNA---AN-----------------------------------YTVWHFRRVLLKSLQKDLH  149 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHTTCCHH
T ss_pred             HHCCChHHHHHHHHHHHHhCc---cC-----------------------------------HHHHHHHHHHHHHcccCHH
Confidence            457888999999999999999   33                                   3478889999999996 99


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++..+|++++|+.+|++++++
T Consensus       150 eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH-hcccccC-----CCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         187 DPNDPLYANNMQAAMSN-LNNSSSA-----SGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       187 ~p~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +|++..+|.+++.++.. .|..++|     +      ..+..++...+.++..|..++.++...
T Consensus       230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el------~~~~~Al~l~P~~~~a~~~l~~ll~~~  287 (382)
T 2h6f_A          230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREV------QYTLEMIKLVPHNESAWNYLKGILQDR  287 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCcchHHHHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence            99999999999999998 4544666     3      556777888888888998888887763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=3.8e-21  Score=182.46  Aligned_cols=156  Identities=23%  Similarity=0.248  Sum_probs=149.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..|++++++.++|.++..+|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      |.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+      ..+..+++..+.+++.+..++.++..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi------~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI------ASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            999999999999999999999999999999999999999999999999      99999999999999999999988777


Q ss_pred             CC
Q psy4130         244 PG  245 (314)
Q Consensus       244 ~~  245 (314)
                      .+
T Consensus       158 ~g  159 (723)
T 4gyw_A          158 VC  159 (723)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=3.9e-22  Score=176.63  Aligned_cols=149  Identities=18%  Similarity=0.151  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      |.++..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|+++++++|.++.++..+|.
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  313 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            33344444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      ++...|++++|+..|+++++++|++..++..++.++...|++++|.      ..+..+.+..|.+++.+..++.+
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~p~~~~a~~~lg~~  382 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL------MHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH------HHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCCCCHHHHHhHHHH
Confidence            5555555555555555555555555555555555555555555554      44444444444444444444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=2.2e-22  Score=154.70  Aligned_cols=146  Identities=16%  Similarity=0.194  Sum_probs=133.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  173 (314)
                      .+|.++..+|++++|+..|++++..+|.++..++.+|.+|...|+|++|+.+|+++++++|+++.+|+.+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchH-HHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGL-SEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      ++|+..|+++++++|+++.++.++|.++...|++++|.      ..+ ..+.+..|.+|.++.+...++...|
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa------~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA------KYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH------HHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH------HHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999876      665 5788889999999999998877654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.87  E-value=9.1e-22  Score=162.33  Aligned_cols=215  Identities=18%  Similarity=0.099  Sum_probs=167.9

Q ss_pred             HHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHH
Q psy4130          17 RKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNL   95 (314)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (314)
                      .......|......|++++|+.+|+++++.+|+. ......++.++...+... +....    .+.....|.....+..+
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFY----DKALELDSSAATAYYGA   97 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCcchHHHHHH
Confidence            3344556667778999999999999999999944 223344455665555432 22221    22233455678899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA  175 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  175 (314)
                      |.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      |+..|++++..+|++..++..++.++...|++++|.      ..+..+.+..+.++..+..+..+..
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL------EMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH------HHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH------HHHHHHHccCcchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998      8888999999999998888776643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=3.5e-21  Score=157.23  Aligned_cols=152  Identities=17%  Similarity=0.218  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      |.++..++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         166 AYTQM-----------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       166 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      ++...           |++++|+..|+++++++|+++.++.++|.++...|++++|+      ..+..+++.. .++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~-~~~~~~  154 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE------ASLKQALALE-DTPEIR  154 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHC-CCHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH------HHHHHHHhcc-cchHHH
Confidence            99999           99999999999999999999999999999999999999999      8888888888 999999


Q ss_pred             HHHHHhhcCC
Q psy4130         235 QVFGELFANP  244 (314)
Q Consensus       235 ~~l~~~~~~~  244 (314)
                      ..++.++...
T Consensus       155 ~~la~~~~~~  164 (217)
T 2pl2_A          155 SALAELYLSM  164 (217)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999887664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.87  E-value=1.5e-21  Score=160.23  Aligned_cols=176  Identities=19%  Similarity=0.155  Sum_probs=159.0

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |......|++++|+++|+++++++|   ..                                  +...++.+|.++...|
T Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~~---~~----------------------------------~~~~~~~~~~~~~~~~   56 (228)
T 4i17_A           14 GNDALNAKNYAVAFEKYSEYLKLTN---NQ----------------------------------DSVTAYNCGVCADNIK   56 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTT---TC----------------------------------CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHhccC---CC----------------------------------CcHHHHHHHHHHHHhh
Confidence            3445568999999999999999987   11                                  1236777999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-------KAYGRMGLAYTQMNDYKAA  176 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A  176 (314)
                      ++++|+..|++++..+|.++.++..+|.+|..+|++++|+..++++++++|+++       .+|+.+|.++...|++++|
T Consensus        57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  136 (228)
T 4i17_A           57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA  136 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence            999999999999999999999999999999999999999999999999999998       6799999999999999999


Q ss_pred             HHHHHHHHhhCCC--CHHHHHHHHHHHHHhccc---------------------------ccCCCCCCCcchHHHHHHhc
Q psy4130         177 LEAYTKAAELDPN--DPLYANNMQAAMSNLNNS---------------------------SSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       177 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~---------------------------~~A~~~~~~~~~~~~~~~~~  227 (314)
                      +..|+++++++|+  +..++.++|.++...|+.                           ++|.      ..+..+.+..
T Consensus       137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~------~~~~~a~~l~  210 (228)
T 4i17_A          137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV------DYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH------HHHHHHhhcC
Confidence            9999999999999  999999999999999988                           7787      8888888888


Q ss_pred             cCChHHHHHHHHhhc
Q psy4130         228 LSDPSIQQVFGELFA  242 (314)
Q Consensus       228 ~~~p~~~~~l~~~~~  242 (314)
                      |.++++...+..+..
T Consensus       211 p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          211 PNRTEIKQMQDQVKA  225 (228)
T ss_dssp             TTCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999998888877643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.87  E-value=6.6e-22  Score=175.13  Aligned_cols=208  Identities=18%  Similarity=0.166  Sum_probs=118.3

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      |..+...|++++|+++|++++.++|++ ...+..++.++...++.+ +....    .+.....|+....+..+|.++...
T Consensus        74 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~  148 (388)
T 1w3b_A           74 GNVYKERGQLQEAIEHYRHALRLKPDF-IDGYINLAAALVAAGDMEGAVQAY----VSALQYNPDLYCVRSDLGNLLKAL  148 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHSCSSHHHHHH----HHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHhCCCcHHHHHHHHHHHHHc
Confidence            334455777888888888888877733 122334444444444321 11111    111223444455556666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      |++++|+..|++++..+|.++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++
T Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  228 (388)
T 1w3b_A          149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      ++.++|++..++..++.++...|++++|.      ..+..+....+.+++.+..++.++.
T Consensus       229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          229 ALSLSPNHAVVHGNLACVYYEQGLIDLAI------DTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHhhCcCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            66666666556666666666666666655      5555555555555555555554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.6e-21  Score=162.12  Aligned_cols=203  Identities=16%  Similarity=0.122  Sum_probs=171.8

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHH-------HHHHHHHHH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIE-------AEKYKNLGN   97 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~   97 (314)
                      .....|++++|+.+|+++++.+ ++ ......++.++...++.. +....    .+.....|..       +..+..+|.
T Consensus        14 ~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~   87 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAWELH-KD-ITYLNNRAAAEYEKGEYETAISTL----NDAVEQGREMRADYKVISKSFARIGN   87 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-CC-THHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhh-cc-HHHHHHHHHHHHHcccHHHHHHHH----HHHHHhCcccccchHHHHHHHHHHHH
Confidence            3456899999999999999888 33 445556666666665432 22221    1223334443       789999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130          98 TAMQQDKPEQAVIEYSKAID--------------------------CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      ++...|++++|+..|++++.                          .+|.++.++..+|.++...|++++|+.++++++.
T Consensus        88 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  167 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK  167 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999999999999999                          6677788999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc----
Q psy4130         152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV----  227 (314)
Q Consensus       152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----  227 (314)
                      .+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|.      ..+..+.+..    
T Consensus       168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~~~~~  241 (258)
T 3uq3_A          168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL------ETLDAARTKDAEVN  241 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHhChhhc
Confidence            999999999999999999999999999999999999999999999999999999999998      8888888887    


Q ss_pred             --cCChHHHHHHHHh
Q psy4130         228 --LSDPSIQQVFGEL  240 (314)
Q Consensus       228 --~~~p~~~~~l~~~  240 (314)
                        +.+++++..+...
T Consensus       242 ~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          242 NGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTTTHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHh
Confidence              7778887777654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.86  E-value=1.6e-20  Score=165.88  Aligned_cols=157  Identities=11%  Similarity=0.055  Sum_probs=151.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN-YKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      +...|..+.+|..+|.++...|++++|+..|++++.++|.+..+|+++|.++..+|+ +++|+.+|++++.++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            456789999999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +++|.++..+|++++|+..|+++++++|++..+|.++|.++..+|++++|+      ..+..+++.-+.++..|..++.+
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl------~~~~~al~l~P~~~~a~~~lg~~  243 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL------QYVDQLLKEDVRNNSVWNQRYFV  243 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH------HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH------HHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999      99999999999999999999998


Q ss_pred             hcCC
Q psy4130         241 FANP  244 (314)
Q Consensus       241 ~~~~  244 (314)
                      +...
T Consensus       244 l~~l  247 (382)
T 2h6f_A          244 ISNT  247 (382)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7773

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.86  E-value=3.4e-20  Score=146.89  Aligned_cols=153  Identities=15%  Similarity=0.152  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      +++.+|+.+|.++...|+|++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++..+|.++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      +...++++.|+..+.+++.++|++..++..+|.++..+|++++|+      ..+..+.+..|.++.++..++.++...+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~~l~~~p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI------EAYEKTISIKPGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHH------HHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999      9999999999999999999999877743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=1.9e-21  Score=170.64  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  173 (314)
                      |.++...|++++|+..|++++..+|.  ++.++.++|.++...|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus       184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  263 (365)
T 4eqf_A          184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS  263 (365)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            55555556666666666666666666  6777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      ++|+..|+++++++|++..++.+++.++..+|++++|.      ..+..+....+.
T Consensus       264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~~~  313 (365)
T 4eqf_A          264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV------SNFLTALSLQRK  313 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH------HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH------HHHHHHHHhCcc
Confidence            77777777777777777777777777777777777776      666666655554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=9.9e-22  Score=172.49  Aligned_cols=210  Identities=11%  Similarity=0.011  Sum_probs=171.9

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ......|++++|+.+|+++++.+|++ ......++.++...+... +....    .+.....|.++.++..+|.++...|
T Consensus        73 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           73 LKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVAL----QRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHhcCCCCHHHHHHHHHHHHccc
Confidence            34456889999999999999999954 233445566666665432 22221    2234456677889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHH----------HHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcC
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNR----------AASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLAYTQMN  171 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g  171 (314)
                      ++++|+..|+++++.+|.+..++..+          |.++...|++++|+..+++++.++|.  ++.++..+|.++...|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            99999999999999998876666555          99999999999999999999999999  8999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      ++++|+..|+++++++|+++.++..++.++...|++++|.      ..+..+....+.++..+..++.++...+
T Consensus       228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV------EAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999      8899999999999999999998877643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=8.2e-21  Score=163.51  Aligned_cols=202  Identities=14%  Similarity=0.088  Sum_probs=117.5

Q ss_pred             hhh-cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          29 SKE-GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        29 ~~~-~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ..| ++++|+.+|+++++.+|++ ......++.++...+... +....    .+.....|.....+..+|.++...|+++
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAY----FTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHH----HHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHH----HHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            344 5666666666666666633 122333344444333221 11111    1112223334455566666666666666


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID---------PHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      +|+..|++++..+|.++.++..+|.++...|++++|+..+++++...         |.++.++..+|.++...|++++|+
T Consensus       177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            66666666666666666666666666666666666666666666664         445566666666666666666666


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ..|+++++++|++..++..++.++...|++++|.      ..+..+.+..+.++..+..++..+
T Consensus       257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV------DYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH------HHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH------HHHHHHHccCCCchHHHHHHHHHH
Confidence            6666666666666666666666666666666665      555555555556666666666554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=1.4e-20  Score=164.82  Aligned_cols=206  Identities=14%  Similarity=0.060  Sum_probs=129.1

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      ....|++++|+.+|+++++.+|++ ......++.++...+... +....    .+.....|.++.++..+|.++...|++
T Consensus        74 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~~~~~~~~~~l~~~~~~~g~~  148 (368)
T 1fch_A           74 RLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISAL----RRCLELKPDNQTALMALAVSFTNESLQ  148 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHH----HHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence            344677777777777777777733 222334445555444322 22211    122234455666777777777777777


Q ss_pred             HHHHHHHHHHHHcCCC---------------------------------------------------CHHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNS---------------------------------------------------NPVYYCNRAASNN  134 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~---------------------------------------------------~~~~~~~la~~~~  134 (314)
                      ++|+..|++++..+|.                                                   ++.++.++|.++.
T Consensus       149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~  228 (368)
T 1fch_A          149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  228 (368)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence            7776666666554443                                                   4556666677777


Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCC
Q psy4130         135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSG  214 (314)
Q Consensus       135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  214 (314)
                      ..|++++|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...|++++|.   
T Consensus       229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~---  305 (368)
T 1fch_A          229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV---  305 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH---
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH---
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777776   


Q ss_pred             CCcchHHHHHHhccCC-----------hHHHHHHHHhhcC
Q psy4130         215 GVFPGLSEMSTKVLSD-----------PSIQQVFGELFAN  243 (314)
Q Consensus       215 ~~~~~~~~~~~~~~~~-----------p~~~~~l~~~~~~  243 (314)
                         ..+..+....+.+           +.+|..++.++..
T Consensus       306 ---~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (368)
T 1fch_A          306 ---EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM  342 (368)
T ss_dssp             ---HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence               6666666655555           4555555555444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.85  E-value=3.6e-20  Score=155.55  Aligned_cols=210  Identities=15%  Similarity=0.104  Sum_probs=168.1

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....|++++|+.+|+++++.+|++.. ....++.++...+.. .+.......... .......+.++..+|.++...|+
T Consensus        12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~   89 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKLEAKKYNSPY-IYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQ   89 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCCCST-THHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHccc
Confidence            344689999999999999999996633 355666666665543 333332222221 11222236679999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++++|.++.+++.+|...+..+++++|+..|++++
T Consensus        90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  169 (272)
T 3u4t_A           90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL  169 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999955556669999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhcc---cccCCCCCCCcchHHHHHHhccCCh--------HHHHHHHHhhcC
Q psy4130         185 ELDPNDPLYANNMQAAMSNLNN---SSSASGSGGVFPGLSEMSTKVLSDP--------SIQQVFGELFAN  243 (314)
Q Consensus       185 ~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~p--------~~~~~l~~~~~~  243 (314)
                      +++|++..++..++.++..+++   +++|.      ..+..+.+.....|        +++..++.++..
T Consensus       170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          170 ELKPNIYIGYLWRARANAAQDPDTKQGLAK------PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHSTTCSSCTTH------HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HhCccchHHHHHHHHHHHHcCcchhhHHHH------HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   88887      77777777664433        345555555444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=4.2e-20  Score=159.07  Aligned_cols=207  Identities=12%  Similarity=0.033  Sum_probs=174.3

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC-CH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD-KP  105 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~  105 (314)
                      ...|++++|++.|+++++.+|..... ...++.++...+. .++....    .+.....|.++..+..+|.++...| ++
T Consensus        33 ~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~  107 (330)
T 3hym_B           33 YYNCDFKMCYKLTSVVMEKDPFHASC-LPVHIGTLVELNKANELFYLS----HKLVDLYPSNPVSWFAVGCYYLMVGHKN  107 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTTT-HHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCChhh-HHHHHHHHHHhhhHHHHHHHH----HHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence            34789999999999999999965333 2233444433333 3333221    2223456677889999999999999 99


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ++|+..|++++..+|.++.+|..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  187 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS  187 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc---------cCChHHHHHHHHhhcCCC
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV---------LSDPSIQQVFGELFANPG  245 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~p~~~~~l~~~~~~~~  245 (314)
                      .+|+++.++..++.++...|++++|.      ..+..+....         +.++.++..++.++...+
T Consensus       188 ~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          188 IAPEDPFVMHEVGVVAFQNGEWKTAE------KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             hCCCChHHHHHHHHHHHHcccHHHHH------HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998      7777777765         556678888887766543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.84  E-value=9.8e-21  Score=157.31  Aligned_cols=201  Identities=13%  Similarity=0.033  Sum_probs=170.9

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      ....|++++|+++|+++++.+|.. ......++.++...++.. +....    .+.....|.....+..+|.++...|++
T Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~la~~~~~~g~~  121 (252)
T 2ho1_A           47 YLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEY----RKALASDSRNARVLNNYGGFLYEQKRY  121 (252)
T ss_dssp             HHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence            445889999999999999999944 223445555666555432 22221    122334556678999999999999999


Q ss_pred             HHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAID--CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       106 ~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ++|+.+|++++.  .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++
T Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999  888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      ++.+|.+..++..++.++...|++++|.      ..+..+....+.++..+..+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~~l~  250 (252)
T 2ho1_A          202 AQGGGQNARSLLLGIRLAKVFEDRDTAA------SYGLQLKRLYPGSLEYQEFQA  250 (252)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTSHHHHHHHT
T ss_pred             HHhCcCcHHHHHHHHHHHHHccCHHHHH------HHHHHHHHHCCCCHHHHHHHh
Confidence            9999999999999999999999999998      888888888888988776553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=9.8e-20  Score=139.70  Aligned_cols=113  Identities=11%  Similarity=0.003  Sum_probs=108.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130          79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  158 (314)
                      .+....+|.++.+++.+|.+++..|++++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|+++.
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            44466789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  191 (314)
                      +|+++|.++..+|++++|+.+|++++++.|+.+
T Consensus       106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.84  E-value=2.6e-20  Score=169.72  Aligned_cols=203  Identities=16%  Similarity=0.134  Sum_probs=173.5

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh--hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD--EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ..+.+++++..++++....|+. ......++.++...++.  ++....    .++...+|.++.+|+.+|.++...|+++
T Consensus        80 ~~~~~~~al~~l~~~~~~~~~~-a~~~~~lg~~~~~~g~~~~~A~~~~----~~al~~~p~~~~a~~~lg~~~~~~g~~~  154 (474)
T 4abn_A           80 VQEEMEKTLQQMEEVLGSAQVE-AQALMLKGKALNVTPDYSPEAEVLL----SKAVKLEPELVEAWNQLGEVYWKKGDVT  154 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSSSSCCHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHhccccHHHHHHHH----HHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence            4556889999999998888833 22334455566554433  222221    3335567788899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM-------  170 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------  170 (314)
                      +|+.+|+++++++|+ ..++.++|.++...         |++++|+..|+++++++|+++.+|+.+|.++...       
T Consensus       155 ~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~  233 (474)
T 4abn_A          155 SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN  233 (474)
T ss_dssp             HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999 79999999999999         9999999999999999999999999999999999       


Q ss_pred             -CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         171 -NDYKAALEAYTKAAELDP---NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       171 -g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                       |++++|+.+|+++++++|   +++.++.++|.++..+|++++|.      ..+..+.+..+.++..+..++.++..
T Consensus       234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL------EGFSQAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             999999999999999999   99999999999999999999999      89999999999999888888877544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.83  E-value=2.9e-20  Score=151.21  Aligned_cols=201  Identities=11%  Similarity=0.054  Sum_probs=165.2

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc-CC
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ-DK  104 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~  104 (314)
                      ....|++++|+++|+++++.+|+. ......++.++...+... +....    .+.....|.....+..+|.++... |+
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~l~~~~~~~~~~   92 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESF----RQALSIKPDSAEINNNYGWFLCGRLNR   92 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHH----HHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence            345889999999999999999944 223445555666555432 22221    222334556678899999999999 99


Q ss_pred             HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAID--CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       105 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      +++|+..|++++.  .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999  66777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         183 AAELDP-NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       183 al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      ++..+| .+..++..++.++...|+.++|.      ..+..+....+.++..+..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~~p~~~~~~~~l~  223 (225)
T 2vq2_A          173 YQSRVEVLQADDLLLGWKIAKALGNAQAAY------EYEAQLQANFPYSEELQTVLT  223 (225)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHhCCCCCHHHHHHHHHHHHhcCcHHHHH------HHHHHHHHhCCCCHHHHHHhc
Confidence            999999 99999999999999999999985      555555667788888776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.83  E-value=1.5e-19  Score=151.39  Aligned_cols=173  Identities=15%  Similarity=0.087  Sum_probs=151.7

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      ......|++++|+..|+++++.+|   .++.                                .+.+++.+|.+++..|+
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l~~~p---~~~~--------------------------------~~~a~~~lg~~~~~~~~   67 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVFTYGR---THEW--------------------------------AADAQFYLARAYYQNKE   67 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHGGGCS---CSTT--------------------------------HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCC---CCcc--------------------------------hHHHHHHHHHHHHHhCc
Confidence            344568999999999999999999   3321                                24689999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCcHHHH-------------
Q psy4130         105 PEQAVIEYSKAIDCDNSN---PVYYCNRAASNNK--------LKNYKLALRDCQIAIKIDPHYAKAY-------------  160 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-------------  160 (314)
                      +++|+..|+++++.+|++   +.+++.+|.++..        .|++++|+..|+++++.+|++..++             
T Consensus        68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~  147 (261)
T 3qky_A           68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL  147 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence            999999999999998854   5789999999999        9999999999999999999987655             


Q ss_pred             ----HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHh----------cccccCCCCCCCcchHHHH
Q psy4130         161 ----GRMGLAYTQMNDYKAALEAYTKAAELDPN---DPLYANNMQAAMSNL----------NNSSSASGSGGVFPGLSEM  223 (314)
Q Consensus       161 ----~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~  223 (314)
                          +.+|.++...|++++|+..|+++++..|+   .+.++..++.++..+          |++++|.      ..+..+
T Consensus       148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~------~~~~~~  221 (261)
T 3qky_A          148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV------ELYERL  221 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH------HHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH------HHHHHH
Confidence                88999999999999999999999999998   567999999999988          8888998      888889


Q ss_pred             HHhccCChHHHHHHH
Q psy4130         224 STKVLSDPSIQQVFG  238 (314)
Q Consensus       224 ~~~~~~~p~~~~~l~  238 (314)
                      .+..|.+|.......
T Consensus       222 ~~~~p~~~~~~~a~~  236 (261)
T 3qky_A          222 LQIFPDSPLLRTAEE  236 (261)
T ss_dssp             HHHCTTCTHHHHHHH
T ss_pred             HHHCCCChHHHHHHH
Confidence            999999886544433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=5e-20  Score=160.15  Aligned_cols=201  Identities=10%  Similarity=0.008  Sum_probs=172.0

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....|++++|+.+|+++++.+|++ ......++.++...+.. .+....    .+.....|....++..+|.++...|+
T Consensus        12 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPDL----TKVIALKMDFTAARLQRGHLLLKQGK   86 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHccCHHHHHHHH----HHHHHhCCCcchHHHHHHHHHHHcCC
Confidence            3446899999999999999999944 22344555566655543 222221    22234566777899999999999999


Q ss_pred             HHHHHHHHHHHHHcCC---CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDN---SNPVYYCNR------------AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      +++|+..|+++++.+|   .+..++..+            |.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus        87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK  166 (359)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999   888888877            7999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHH
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVF  237 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l  237 (314)
                      .|++++|+..++++++.+|+++.++..++.++...|++++|.      ..+..+....+.++..+..+
T Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~~  228 (359)
T 3ieg_A          167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL------SEVRECLKLDQDHKRCFAHY  228 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCccchHHHHHH
Confidence            999999999999999999999999999999999999999998      88888888888888876544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.83  E-value=5.2e-19  Score=145.00  Aligned_cols=149  Identities=23%  Similarity=0.281  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      +..++.+|.+++..|+|++|+..|+++++.+| .+..+++++|.++...|++++|+.+|+++++.+|+++.++..+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            47899999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC--ChHHHHHHH
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDP-------LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS--DPSIQQVFG  238 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~p~~~~~l~  238 (314)
                      ..+|++++|+..|+++++++|+++       .++..+|.++...|++++|+      ..+..+++..+.  ++..+..++
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE------ENYKHATDVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH------HHHHHHHhcCCCcccHHHHHHHH
Confidence            999999999999999999999999       67999999999999999998      777777777777  777777777


Q ss_pred             HhhcC
Q psy4130         239 ELFAN  243 (314)
Q Consensus       239 ~~~~~  243 (314)
                      .++..
T Consensus       161 ~~~~~  165 (228)
T 4i17_A          161 VLFYN  165 (228)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.82  E-value=1.1e-20  Score=172.25  Aligned_cols=183  Identities=17%  Similarity=0.075  Sum_probs=157.6

Q ss_pred             cCCCcchhhcH-HHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          23 DTLNAESKEGI-EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        23 ~~~~~~~~~~~-~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      .|..+...+++ ++|+++|+++++++|++ ...+..++.+|...++. ++...+....    ...|. ..++..+|.++.
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~-~~~~~~lg~~~~  181 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCFSGAL----THCKN-KVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH----TTCCC-HHHHHHHHHHHT
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCCC-HHHHHHHHHHHH
Confidence            44455668899 99999999999999955 23455667677666643 3333322221    22333 488999999999


Q ss_pred             hc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC---CcHHHH
Q psy4130         101 QQ---------DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL--------KNYKLALRDCQIAIKIDP---HYAKAY  160 (314)
Q Consensus       101 ~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~  160 (314)
                      ..         |++++|+..|+++++++|.++.+|+++|.+|...        |++++|+.+|+++++++|   .++.+|
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  261 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH  261 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence            99         9999999999999999999999999999999999        999999999999999999   999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++|.++...|++++|+..|+++++++|++..++..++.++..+|++++|+
T Consensus       262 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=3.3e-19  Score=156.11  Aligned_cols=209  Identities=14%  Similarity=0.101  Sum_probs=163.9

Q ss_pred             CcchhhcHHHHHH-HHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          26 NAESKEGIEVAVE-CLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        26 ~~~~~~~~~~Ai~-~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      .....+++++|++ +|++++.+.|+++.   ...+.++..+...+.. .+....    .+.....|.++.++..+|.++.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~  109 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF----EAAVQQDPKHMEAWQYLGTTQA  109 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH----HHHHHSCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHH
Confidence            4456789999999 99999999996642   2344566666655543 333322    2223345667889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------------
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP--------------------------  154 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------------  154 (314)
                      ..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|                          
T Consensus       110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 1fch_A          110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG  189 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred             HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence            999999999999999999999999999999999999999888888877766554                          


Q ss_pred             -----------------------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         155 -----------------------H--YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       155 -----------------------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                                             .  ++.++..+|.++...|++++|+..|++++.++|+++.++..++.++...|++++
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence                                   4  678889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         210 ASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       210 A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      |.      ..+..+....+.++..+..++.++...
T Consensus       270 A~------~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          270 AV------AAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HH------HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            98      888888888888898888888887654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=7.3e-19  Score=130.44  Aligned_cols=118  Identities=27%  Similarity=0.348  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+..+..+|..++..|+|++|+..|+++++.+|.++.+|.++|.++..+|++++|+.+++++++++|+++.+|+.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q psy4130         167 YTQMNDYKAALEAYTKAAELD------PNDPLYANNMQAAMSNL  204 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~  204 (314)
                      +..+|++++|+..|+++++++      |++..++..+..+...+
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999      99999999999887654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=7.5e-19  Score=138.19  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=148.8

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ....|++++|+.+|+++++.+|   .+                                   +..+..+|.++...|+++
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~---~~-----------------------------------~~~~~~~~~~~~~~~~~~   59 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADA---FD-----------------------------------VDVALHLGIAYVKTGAVD   59 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTS---CC-----------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCc---cC-----------------------------------hHHHHHHHHHHHHcCCHH
Confidence            3457899999999999999888   33                                   346889999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      +|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..
T Consensus        60 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       187 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      +|.++.++..++.++...|++++|.      ..+..+....+.++.
T Consensus       140 ~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          140 RPNEGKVHRAIAFSYEQMGRHEEAL------PHFKKANELDEGASV  179 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHCCCG
T ss_pred             CccchHHHHHHHHHHHHcCCHHHHH------HHHHHHHHcCCCchh
Confidence            9999999999999999999999998      777777776666553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.81  E-value=3.9e-19  Score=154.52  Aligned_cols=205  Identities=11%  Similarity=0.074  Sum_probs=171.6

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....|++++|+++|+++++.+|+. ......++.++...+... +.....    +.....|.++..+..+|.++...|+
T Consensus       129 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          129 DAFDGADYTAAITFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDLK----AASKLKSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHH----HHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHCCCHHHHHHHHH----HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            4456899999999999999999944 223445555666655432 222211    1122345667899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYC------------NRAASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRMGLAYT  168 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~  168 (314)
                      +++|+..|+++++.+|.+..++.            .+|.++...|++++|+..+++++..+|+++    .++..+|.++.
T Consensus       204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  283 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS  283 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999988655            448889999999999999999999999987    44677999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ..|++++|+..|+++++.+|+++.++..+|.++...|++++|.      ..+..+.+..|.++.++..+..+.
T Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~------~~~~~a~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI------QDYEAAQEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCChHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998      888899999899999888877663

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.81  E-value=2.6e-19  Score=161.15  Aligned_cols=206  Identities=12%  Similarity=0.084  Sum_probs=175.3

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      +......|++++|+.+|+++++.+|++ ......++.+|...+... +....    .+.....|.++..+..+|.++...
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~  224 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDL----KAASKLKNDNTEAFYKISTLYYQL  224 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCGGGGHHHH----HHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHc
Confidence            334556899999999999999999943 223445556666665433 22221    222344566788999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNR------------AASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRMGLA  166 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~  166 (314)
                      |++++|+..|++++..+|.+..++..+            |.++...|++++|+..|++++.++|.++    ..+..+|.+
T Consensus       225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~  304 (450)
T 2y4t_A          225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC  304 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            999999999999999999999888766            9999999999999999999999999985    488999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +...|++++|+..++++++++|+++.++..++.++...|++++|.      ..+..+.+..|.++.++..++.+
T Consensus       305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~l~~~  372 (450)
T 2y4t_A          305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI------QDYETAQEHNENDQQIREGLEKA  372 (450)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHhCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998      88888999889999998888844

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.81  E-value=5.4e-20  Score=160.16  Aligned_cols=180  Identities=18%  Similarity=0.191  Sum_probs=149.3

Q ss_pred             hhhcHHHHHHHHHH----HcCCCCCCCCCchhhHHHHHHHhch-------hhhhhh--hccCCCCCChhhHHHHHHHHHH
Q psy4130          29 SKEGIEVAVECLCK----AYDIPDNIDPASNVDIESLFQLYYK-------DEVLQW--YSNINFSPTEEVKIEAEKYKNL   95 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~----al~~~p~~~~~~~~~l~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   95 (314)
                      ..+.+++|+..++.    ++.+.|.+   .+...+........       .+...+  ............|..+..+..+
T Consensus        77 ~~~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~  153 (336)
T 1p5q_A           77 LPYGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER  153 (336)
T ss_dssp             CCHHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHH
Confidence            36689999999999    99999944   22111111100000       000000  1112234456788999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSN---------------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      |.+++..|+|++|+..|++++.++|.+               ..+|.++|.||..+|++++|+.+|+++++++|+++.++
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  233 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL  233 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            999999999999999999999999998               68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++|.++..+|++++|+.+|+++++++|++..++..++.++..+|++++|.
T Consensus       234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999884

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=1.5e-19  Score=171.65  Aligned_cols=150  Identities=9%  Similarity=-0.063  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      .++.+++.+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus       431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~  510 (681)
T 2pzi_A          431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAAT  510 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            33457888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +..+|++++ +..|+++++++|++..+++++|.++..+|++++|+      ..+..+.+..+.++..+..++.++..
T Consensus       511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV------RTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH------HHHHhhcccCcccHHHHHHHHHHHHc
Confidence            888888888 88888888888888888888888888888888887      66665555566666777777766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.81  E-value=3.6e-19  Score=166.00  Aligned_cols=206  Identities=14%  Similarity=0.120  Sum_probs=162.1

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .+...|++++|+++|+++++.+|++ ......++.+|...+.. ++.....    +.....|.+...+..+|.++...|+
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~  456 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHSFAIEGEHDQAISAYT----TAARLFQGTHLPYLFLGMQHMQLGN  456 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHH----HHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHhCccchHHHHHHHHHHHHcCC
Confidence            3455788888999998888888833 11233444455555433 2222211    1122344566788889999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHHcCCHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI------DPHY-AKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      +++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|+++++.      +|++ ..+|..+|.++...|++++|+
T Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  536 (597)
T 2xpi_A          457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI  536 (597)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999998999999999999999999999999999888      6664 788899999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      ..|+++++++|+++.++..++.++...|++++|.      ..+..+.+..|.++..+..++.++.
T Consensus       537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI------THLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH------HHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999999999999999999999999999998      8888888888888888888887764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=2.7e-19  Score=133.10  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=114.9

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         114 KAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       114 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      ++..++|+.+..+.++|.++++.|+|++|+.+|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         194 ANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      +.++|.++..+|++++|+      ..+..+++.-|.+++++..++.++
T Consensus        84 ~~~lg~~~~~~~~~~~A~------~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQ------RAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHH------HHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999      999999999999999998887763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.81  E-value=6.9e-19  Score=133.64  Aligned_cols=127  Identities=17%  Similarity=0.103  Sum_probs=116.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130          79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  158 (314)
                      .+....+|.+...++.+|..++..|++++|+..|++++..+|.++.+|+++|.++...|++++|+.+|++++.++|+++.
T Consensus         8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A            8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            45566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      +++.+|.++..+|++++|+.+|+++++++|+++........+...++
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999988776666665555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.80  E-value=1.5e-18  Score=132.82  Aligned_cols=126  Identities=17%  Similarity=0.107  Sum_probs=114.4

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      ...+|.+...++.+|.+++..|++++|+..|++++..+|.++.+|+++|.++...|++++|+.+|++++.++|+++.+++
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  207 (314)
                      .+|.++..+|++++|+.+|+++++++|+++........+...+...
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999998877655555555544443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.80  E-value=2.3e-19  Score=145.45  Aligned_cols=183  Identities=13%  Similarity=0.014  Sum_probs=141.9

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+.+|+++++.+|   +++..+..   . ..               .......+...+.+|.++...|++
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~---~-~~---------------~~~~~~~~~~~~~lg~~~~~~g~~   70 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNI---DRTEMYYW---T-NV---------------DKNSEISSKLATELALAYKKNRNY   70 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHH---H-HS---------------CTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC---CChHHHHH---h-hh---------------cchhhhhHHHHHHHHHHHHHCCCH
Confidence            34468999999999999999999   44332211   0 00               011223345677899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND--YKAALEAYTKA  183 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a  183 (314)
                      ++|+..|+++++++|+++.+++++|.++...|++++|+.+|+++++++|+++.+|+.+|.+++..|+  ...+...+.++
T Consensus        71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~  150 (208)
T 3urz_A           71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL  150 (208)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987764  55677888887


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      +..+|. ..+++.+|.++...|++++|+      ..+..+++..|. ++....+.
T Consensus       151 ~~~~~~-~~a~~~~g~~~~~~~~~~~A~------~~~~~al~l~P~-~~~~~~l~  197 (208)
T 3urz_A          151 SSPTKM-QYARYRDGLSKLFTTRYEKAR------NSLQKVILRFPS-TEAQKTLD  197 (208)
T ss_dssp             -CCCHH-HHHHHHHHHHHHHHHTHHHHH------HHHHHHTTTSCC-HHHHHHHH
T ss_pred             hCCCch-hHHHHHHHHHHHHccCHHHHH------HHHHHHHHhCCC-HHHHHHHH
Confidence            654332 346788999999999999998      777666666554 33333333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.80  E-value=2.7e-19  Score=161.06  Aligned_cols=201  Identities=10%  Similarity=0.013  Sum_probs=169.6

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .....|++++|+.+|+++++.+|++ ......++.++...+.. .+....    .+.....|..+.++..+|.++...|+
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPDL----TKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            3456899999999999999999944 22334455566655543 222221    22234556778899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNP---VYYCNR------------AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      +++|+..|++++..+|.+.   .++..+            |.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus       110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  189 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK  189 (450)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999988   776655            6779999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHH
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVF  237 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l  237 (314)
                      .|++++|+..|+++++.+|+++.++..++.++...|++++|.      ..+..+....+.++..+..+
T Consensus       190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~~~  251 (450)
T 2y4t_A          190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL------SEVRECLKLDQDHKRCFAHY  251 (450)
T ss_dssp             TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCChHHHHHHH
Confidence            999999999999999999999999999999999999999998      88888888888888877665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=3.9e-18  Score=145.42  Aligned_cols=193  Identities=14%  Similarity=0.006  Sum_probs=155.2

Q ss_pred             hhhcHHHHHHHHHHHcCC--CCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          29 SKEGIEVAVECLCKAYDI--PDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~--~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      ..++.++|++.|++++..  +|++ ....+.++.++...++. ++....    .+     +.+..++..+|.++...|++
T Consensus        77 ~~~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l----~~-----~~~~~~~~~l~~~~~~~g~~  146 (291)
T 3mkr_A           77 SHSRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTL----HQ-----GDSLECMAMTVQILLKLDRL  146 (291)
T ss_dssp             CSTTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHH----TT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred             CCCcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHH----hC-----CCCHHHHHHHHHHHHHCCCH
Confidence            367889999999998864  6844 22345556677666654 333332    11     45678999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAA--SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      ++|+..|+++++.+|++.......+.  ++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++
T Consensus       147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999998654443332  2334589999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhcccccC-CCCCCCcchHHHHHHhccCChHHHHHH
Q psy4130         184 AELDPNDPLYANNMQAAMSNLNNSSSA-SGSGGVFPGLSEMSTKVLSDPSIQQVF  237 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~p~~~~~l  237 (314)
                      ++++|+++.++.+++.++...|+.+++ .      ..+..+.+..|.+|.+..+.
T Consensus       227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~------~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          227 LDKDSGHPETLINLVVLSQHLGKPPEVTN------RYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHH------HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHhCCCChHHHHHH
Confidence            999999999999999999999999764 3      44567777888898776543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=7.4e-20  Score=157.28  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=78.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+
T Consensus       151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33344444444444445555566666666666666777777777777777666666666677777777777777777777


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      ++++.+|++..++..++.++...|++++|.      ..+..+....+.
T Consensus       231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~~~  272 (327)
T 3cv0_A          231 RALDINPGYVRVMYNMAVSYSNMSQYDLAA------KQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHhccHHHHH------HHHHHHHHhCCc
Confidence            777666666666667777777777766666      555555555555

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=1.3e-19  Score=155.74  Aligned_cols=207  Identities=12%  Similarity=0.059  Sum_probs=171.6

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      ....|++++|+.+|+++++.+|+. ......++.++...+... +....    .+.....|.....+..+|.++...|++
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~la~~~~~~~~~  105 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPER-EEAWRSLGLTQAENEKDGLAIIAL----NHARMLDPKDIAVHAALAVSHTNEHNA  105 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence            345889999999999999999943 223334555665555432 22221    222344566788999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNR--------------AA-SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      ++|+..|++++..+|.+...+..+              +. ++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus       106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  185 (327)
T 3cv0_A          106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS  185 (327)
T ss_dssp             HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998887777              66 788999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      |++++|+..++++++.+|++..++..++.++...|++++|.      ..+..+.+..+.++..+..++.++...
T Consensus       186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL------DAYNRALDINPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998      888888888889999998888887664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.79  E-value=1.6e-17  Score=139.33  Aligned_cols=175  Identities=15%  Similarity=0.064  Sum_probs=154.1

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....+++++|+..|+++++..|   .+                               .+..+..+..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~---~~-------------------------------~~~~~~~~~~l~~~~~~~~~~   59 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRA---LT-------------------------------DDERAQLLYERGVLYDSLGLR   59 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSC---CC-------------------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhccc---cc-------------------------------CchhHHHHHHHHHHHHHcccH
Confidence            44567999999999999999866   21                               345678899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|.++.++..+|.++...|++++|+..|+++++
T Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  139 (275)
T 1xnf_A           60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ++|++......++.+ ...|++++|.      ..+.......+.++..+......+
T Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~~  188 (275)
T 1xnf_A          140 DDPNDPFRSLWLYLA-EQKLDEKQAK------EVLKQHFEKSDKEQWGWNIVEFYL  188 (275)
T ss_dssp             HCTTCHHHHHHHHHH-HHHHCHHHHH------HHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred             hCCCChHHHHHHHHH-HHhcCHHHHH------HHHHHHHhcCCcchHHHHHHHHHH
Confidence            999998777766655 6679999998      777788888887777666555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.79  E-value=1.8e-19  Score=151.29  Aligned_cols=208  Identities=11%  Similarity=0.033  Sum_probs=169.4

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCC---chhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPA---SNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      ......|++++|+++|+++++ .|..+..   ....++.++...+... +....    .+.....|..+..+..+|.++.
T Consensus        45 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~l~~~~~  119 (272)
T 3u4t_A           45 VCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQY----QAAVDRDTTRLDMYGQIGSYFY  119 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHH----HHHHhcCcccHHHHHHHHHHHH
Confidence            345568999999999999999 5533222   1346666776666433 22221    2234456667789999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND---YKAAL  177 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~  177 (314)
                      ..|++++|+..|+++++.+|.++.+++++|......+++++|+..++++++++|+++.+++.+|.++...++   +++|+
T Consensus       120 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~  199 (272)
T 3u4t_A          120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK  199 (272)
T ss_dssp             HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred             HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence            999999999999999999999999999999444455699999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHhhC---CC-----CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         178 EAYTKAAELD---PN-----DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       178 ~~~~~al~~~---p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ..|++++++.   |+     ...++..+|.++...|++++|.      ..+..+....|.++..+..+..+...
T Consensus       200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD------AAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCccHHHHHHHhhhhhcc
Confidence            9999999986   54     2368999999999999999999      99999999999999999988877554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.79  E-value=4.7e-18  Score=126.56  Aligned_cols=114  Identities=29%  Similarity=0.404  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------H
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-------A  157 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~  157 (314)
                      .++.+.++..+|+.+++.|+|++|+.+|+++++++|.++.+|.++|.+|..+|+|++|+.+++++++++|++       +
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999999999998865       3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA  199 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  199 (314)
                      .+++++|.++..+|++++|+.+|++++..+|+ ++....+..
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence            68999999999999999999999999999885 555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.79  E-value=1.7e-17  Score=122.78  Aligned_cols=127  Identities=46%  Similarity=0.709  Sum_probs=121.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      ....+..+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS  208 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  208 (314)
                      .+|.++...|++++|+..|+++++++|++..++..++.++..+|+++
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999998864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.79  E-value=3.1e-18  Score=133.18  Aligned_cols=124  Identities=33%  Similarity=0.474  Sum_probs=112.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..+..+..++.+|.+++..|+|++|+.+|+++++++|.++.+|+++|.+|...|++++|+.+|+++++++|+++.+|+.+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHhccc
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA--AMSNLNNS  207 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~  207 (314)
                      |.++..+|++++|+.+|+++++++|++..++...+.  +..++++.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999885555444  44444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=1.2e-19  Score=139.17  Aligned_cols=117  Identities=10%  Similarity=-0.064  Sum_probs=108.9

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP  188 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  188 (314)
                      -..|++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus        22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                      +++.+++++|.++..+|++++|+      ..+..+.+..+.++
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~------~~~~~al~l~~~~~  138 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAK------ECFELVIQHSNDEK  138 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCHH
Confidence            99999999999999999999998      77777777665544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.79  E-value=3.2e-18  Score=132.84  Aligned_cols=125  Identities=18%  Similarity=0.154  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------------------DNSNPVYYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      ..+..+...|..++..|+|++|+..|++++.+                  +|.+..+|+++|.||..+|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45788999999999999999999999999999                  777778999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcccccCC
Q psy4130         149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-LYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       149 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++.++|+++.+|+++|.++..+|++++|+..|+++++++|+++ .+...+..+....++..+..
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~  152 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS  152 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 78899999998888877764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=3.3e-18  Score=159.46  Aligned_cols=181  Identities=14%  Similarity=0.000  Sum_probs=95.7

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  104 (314)
                      .+...|++++|++.|+++++.+|++... ...++.++...+.. ++....    .......|.+...+..+|.++.+.|+
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~  388 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEIDPYNLDV-YPLHLASLHESGEKNKLYLIS----NDLVDRHPEKAVTWLAVGIYYLCVNK  388 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCCTT-HHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTSHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHHcCcccHHH-HHHHHHHHHHhCCHHHHHHHH----HHHHhhCcccHHHHHHHHHHHHHhcc
Confidence            3456788888888888888877754222 22333333333322 111111    01112233344455555555555555


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +++|+..|+++++.+|.+..+|..++.+|...|++++|+..|++++...|++..+|..+|.++...|++++|+..|++++
T Consensus       389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         185 ELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.+|.++.++..++.++...|++++|.
T Consensus       469 ~~~~~~~~~~~~l~~~~~~~g~~~~A~  495 (597)
T 2xpi_A          469 ALFQYDPLLLNELGVVAFNKSDMQTAI  495 (597)
T ss_dssp             HHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            555555555555555555555555554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.78  E-value=4.2e-18  Score=158.49  Aligned_cols=157  Identities=13%  Similarity=0.064  Sum_probs=121.7

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      .|++++|+++|+++++.+|   .+                                   +.++..+|.++...|++++|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p---~~-----------------------------------~~~~~~lg~~~~~~g~~~~A~   43 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP---QD-----------------------------------FVAWLMLADAELGMGDTTAGE   43 (568)
T ss_dssp             ----------------------CC-----------------------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHHHHcCCHHHHH
Confidence            4688899999999999988   33                                   346888999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ..|+++++++|+++.++.++|.+|..+|++++|+.+++++++++|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus        44 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           44 MAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHh---cccccCCCCCCCcchHHHHHHhccCC
Q psy4130         190 DPLYANNMQAAMSNL---NNSSSASGSGGVFPGLSEMSTKVLSD  230 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~  230 (314)
                      +..++.+++.++..+   |++++|.      ..+....+..+.+
T Consensus       124 ~~~~~~~l~~~~~~~~~~g~~~~A~------~~~~~al~~~p~~  161 (568)
T 2vsy_A          124 EPYITAQLLNWRRRLCDWRALDVLS------AQVRAAVAQGVGA  161 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHH------HHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhhccccHHHHH------HHHHHHHhcCCcc
Confidence            999999999999999   8888887      6666666665553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=1.1e-18  Score=132.94  Aligned_cols=118  Identities=13%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-------NPV-----YYCNRAASNNKLKNYKLALRDCQIAIKI-  152 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~-  152 (314)
                      ...+..+...|+.++..|+|++|+..|+++|+++|+       +..     +|.++|.++..+|+|++|+.+|+++|++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            346778999999999999999999999999999999       444     9999999999999999999999999999 


Q ss_pred             ------CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         153 ------DPHYAKAY----GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       153 ------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                            +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                  99999999    9999999999999999999999999999987666555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.78  E-value=1e-17  Score=137.88  Aligned_cols=156  Identities=20%  Similarity=0.183  Sum_probs=147.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..|.....+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus        52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44556889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      |.++...|++++|+..++++++.+|++..++..++.++...|++++|.      ..+..+....+.++..+..++.++..
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL------SQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998      88888888888999999999888766


Q ss_pred             CC
Q psy4130         244 PG  245 (314)
Q Consensus       244 ~~  245 (314)
                      .+
T Consensus       206 ~~  207 (243)
T 2q7f_A          206 KE  207 (243)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.78  E-value=5.4e-18  Score=137.29  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCN----------------RAASNNKLKNYKLALRDCQIAIK  151 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~  151 (314)
                      .++.+...|..++..|++++|+..|+++++.+|+++.+|+.                +|.+|...|++++|+.+|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      ++|+++.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...++.+.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999999999988776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=2.5e-18  Score=141.00  Aligned_cols=151  Identities=12%  Similarity=0.029  Sum_probs=134.8

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+..|+++++..|   .++.                                ...+++.+|.+++..|+|
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p---~~~~--------------------------------~~~a~~~lg~~~~~~~~~   57 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYP---FGPY--------------------------------SQQVQLDLIYAYYKNADL   57 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCT---TSTT--------------------------------HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CChH--------------------------------HHHHHHHHHHHHHhcCCH
Confidence            34568999999999999999999   3321                                245799999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH------------------ccCHHHHHHHHHHHHHhCCCcHHHH----
Q psy4130         106 EQAVIEYSKAIDCDNSNPV---YYCNRAASNNK------------------LKNYKLALRDCQIAIKIDPHYAKAY----  160 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~----  160 (314)
                      ++|+..|+++++.+|+++.   +++.+|.++..                  .|++++|+..|+++++..|+++.++    
T Consensus        58 ~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~  137 (225)
T 2yhc_A           58 PLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK  137 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence            9999999999999999864   78999999886                  5799999999999999999987554    


Q ss_pred             -------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccccCC
Q psy4130         161 -------------GRMGLAYTQMNDYKAALEAYTKAAELDPNDP---LYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       161 -------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~  211 (314)
                                   +.+|.++...|++++|+..|+++++..|+++   .++..++.++..+|++++|.
T Consensus       138 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~  204 (225)
T 2yhc_A          138 RLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE  204 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence                         6789999999999999999999999999986   68999999999999999996

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.77  E-value=6.2e-19  Score=162.11  Aligned_cols=211  Identities=12%  Similarity=0.034  Sum_probs=175.2

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      .|......|++++|+.+|+++++.+|+  ......++.++...+.. .+....    .+.....|..+.++..+|.++..
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFF----QKAVDLNPEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHH----HHHhccCCCCHHHHHHHHHHHHh
Confidence            344556688999999999999999994  22333444455444432 222221    22234556678899999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHH------HHHHHHHHHHHh----------cccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         182 KAAELDPNDPL------YANNMQAAMSNL----------NNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       182 ~al~~~p~~~~------~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      ++++++|++..      .+..++.++...          |++++|.      ..+..+....+.++.++..++.++...+
T Consensus       403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~------~~~~~a~~~~p~~~~~~~~l~~~~~~~g  476 (537)
T 3fp2_A          403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI------KLLTKACELDPRSEQAKIGLAQLKLQME  476 (537)
T ss_dssp             HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            99999886543      356678889988          9999998      8888999999999999999998877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.2e-18  Score=144.49  Aligned_cols=177  Identities=23%  Similarity=0.254  Sum_probs=141.2

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCC------CchhhHHHHHHHhchh-hhhhhhccCCC------------------
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDP------ASNVDIESLFQLYYKD-EVLQWYSNINF------------------   79 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~------~~~~~l~~~~~~~~~~-~~~~~~~~~~~------------------   79 (314)
                      ......|++++|+++|+++++++|+...      .....++.++...+.. .+.........                  
T Consensus        46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~  125 (258)
T 3uq3_A           46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL  125 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH
Confidence            3445578888888888888888874421      1223344455444432 22221111110                  


Q ss_pred             ----CCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130          80 ----SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus        80 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  155 (314)
                          +.....|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence                0111567888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELD------PNDPLYANNMQAAM  201 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~  201 (314)
                      ++.++..+|.++...|++++|+..|+++++++      |++..++..++.++
T Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence            99999999999999999999999999999999      99988888887653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=7.3e-19  Score=160.55  Aligned_cols=211  Identities=15%  Similarity=0.064  Sum_probs=177.8

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      .|......|++++|+.+|+++++.+|+  ......++.++...+... +.....    +.....|.+...+..+|.++..
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFD----KALKLDSNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHH----HHHTTCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHH----HHhhcCcCCHHHHHHHHHHHHH
Confidence            344556689999999999999999995  233344455665555432 222211    1122345567789999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+
T Consensus       317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHH------HHHHHHHHHHH---hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         182 KAAELDPNDPL------YANNMQAAMSN---LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       182 ~al~~~p~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      +++..+|+++.      ++..++.++..   .|++++|.      ..+..+....+.++..+..++.++...+
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~la~~~~~~g  463 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT------NLLEKASKLDPRSEQAKIGLAQMKLQQE  463 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH------HHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            99999998855      99999999999   99999998      8888888888899999988888877643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=4.4e-19  Score=162.04  Aligned_cols=205  Identities=13%  Similarity=0.059  Sum_probs=173.4

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ......|++++|+.+|++++..+|++ ......++.++...+.. .+.....    +.....|.+...+..+|.++...|
T Consensus       278 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~  352 (514)
T 2gw1_A          278 LIMADRNDSTEYYNYFDKALKLDSNN-SSVYYHRGQMNFILQNYDQAGKDFD----KAKELDPENIFPYIQLACLAYREN  352 (514)
T ss_dssp             HHHHTSSCCTTGGGHHHHHHTTCTTC-THHHHHHHHHHHHTTCTTHHHHHHH----HHHHTCSSCSHHHHHHHHHTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHHHhhcCcCC-HHHHHHHHHHHHHhCCHHHHHHHHH----HHHHhChhhHHHHHHHHHHHHHcC
Confidence            34455789999999999999999955 23344556666665543 2222211    112234445678999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHH---cCCHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK------AYGRMGLAYTQ---MNDYK  174 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~g~~~  174 (314)
                      ++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..      +++.+|.++..   .|+++
T Consensus       353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  432 (514)
T 2gw1_A          353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI  432 (514)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred             CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence            9999999999999999999999999999999999999999999999999998855      99999999999   99999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       175 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +|+..|++++..+|++..++..++.++...|++++|.      ..+..+....+.+++++..+...
T Consensus       433 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI------TLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHhccccHHHHHHHHHH
Confidence            9999999999999999999999999999999999998      88889999988888887766543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=123.75  Aligned_cols=124  Identities=34%  Similarity=0.481  Sum_probs=118.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ...+.....++.+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++|+.+++++++.+|.++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      +|.++...|++++|+..|++++.++|.+..++..++.++...|+
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999988764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.76  E-value=3.6e-17  Score=131.19  Aligned_cols=130  Identities=26%  Similarity=0.310  Sum_probs=123.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHccCHHHHHHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------VYYCNRAASNNKLKNYKLALRD  145 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~  145 (314)
                      ....+..+..+..+|..++..|+|++|+..|++++.+.|.++                .++.++|.++..+|++++|+.+
T Consensus        31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  110 (198)
T 2fbn_A           31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH  110 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            456677889999999999999999999999999999999887                8999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       146 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus       111 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.76  E-value=2.4e-17  Score=137.94  Aligned_cols=154  Identities=14%  Similarity=0.062  Sum_probs=138.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---H
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---A  157 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~  157 (314)
                      ..+..+..++.+|..++..|+|++|+..|++++..+|.+   +.+++.+|.+|..+|++++|+..|+++++.+|++   +
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            344567899999999999999999999999999999999   8999999999999999999999999999998854   6


Q ss_pred             HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcccccCCC
Q psy4130         158 KAYGRMGLAYTQ--------MNDYKAALEAYTKAAELDPNDPLYA-----------------NNMQAAMSNLNNSSSASG  212 (314)
Q Consensus       158 ~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~  212 (314)
                      .+++.+|.++..        .|++++|+..|+++++.+|+++.+.                 +.+|.++...|++++|+ 
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-  168 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA-  168 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-
Confidence            899999999999        9999999999999999999986665                 88899999999999999 


Q ss_pred             CCCCcchHHHHHHhccCCh---HHHHHHHHhhcC
Q psy4130         213 SGGVFPGLSEMSTKVLSDP---SIQQVFGELFAN  243 (314)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~p---~~~~~l~~~~~~  243 (314)
                           ..+..++...|.++   +.+..++.++..
T Consensus       169 -----~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  197 (261)
T 3qky_A          169 -----VTYEAVFDAYPDTPWADDALVGAMRAYIA  197 (261)
T ss_dssp             -----HHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence                 88889888888854   566777766554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.76  E-value=1.8e-17  Score=137.49  Aligned_cols=154  Identities=19%  Similarity=0.130  Sum_probs=137.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK--IDPHYAKAYG  161 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~  161 (314)
                      ..|..+.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++.  .+|.+..++.
T Consensus        66 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  145 (252)
T 2ho1_A           66 IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE  145 (252)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHH
Confidence            44566788999999999999999999999999999999999999999999999999999999999999  8888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      .+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|.      ..+..+....+.++..+..+..++
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR------QYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCcCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998      777787777788888877777776


Q ss_pred             cC
Q psy4130         242 AN  243 (314)
Q Consensus       242 ~~  243 (314)
                      ..
T Consensus       220 ~~  221 (252)
T 2ho1_A          220 KV  221 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=2.5e-18  Score=131.55  Aligned_cols=124  Identities=14%  Similarity=0.143  Sum_probs=115.8

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP  188 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  188 (314)
                      ...|++++.++|.+..+++.+|.++...|++++|+..|++++.++|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      +++.+++++|.++..+|++++|.      ..+..+....+.+|+......
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAE------SGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHH------HHHHHHHHHCcCCCcchHHHH
Confidence            99999999999999999999998      888888888888886544333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.75  E-value=6e-17  Score=131.40  Aligned_cols=156  Identities=8%  Similarity=-0.053  Sum_probs=129.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCcHH
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQIAIK--IDPHYAK  158 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--~~p~~~~  158 (314)
                      ....|..+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..+++++.  .+|.+..
T Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  114 (225)
T 2vq2_A           35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI  114 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHH
T ss_pred             HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHH
Confidence            3455666778888888888888888888888888888888888888888888888 888888888888888  6677788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc-CChHHHHHH
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL-SDPSIQQVF  237 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~p~~~~~l  237 (314)
                      +++.+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|.      ..+..+....+ .++..+..+
T Consensus       115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~~~  188 (225)
T 2vq2_A          115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD------YYFKKYQSRVEVLQADDLLLG  188 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCCHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888887      77777777777 777777666


Q ss_pred             HHhhcC
Q psy4130         238 GELFAN  243 (314)
Q Consensus       238 ~~~~~~  243 (314)
                      ..++..
T Consensus       189 ~~~~~~  194 (225)
T 2vq2_A          189 WKIAKA  194 (225)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.75  E-value=1.1e-16  Score=123.81  Aligned_cols=128  Identities=27%  Similarity=0.380  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .....+..+..+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|+.++++++.++|.++.+++.+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhcccccCC
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA--MSNLNNSSSAS  211 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~  211 (314)
                      |.++...|++++|+.+|+++++++|++..++..++.+  +...|++++|.
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~  137 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  137 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988665555  77889998886

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=3.3e-17  Score=150.55  Aligned_cols=195  Identities=13%  Similarity=0.106  Sum_probs=156.7

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCC------chhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPA------SNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~------~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      ..+++++|+.+|+++++.+|++...      ....++.++...+.. .+....    .+.....|. ...+..+|.++..
T Consensus       214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~----~~~~~~~~~-~~~~~~l~~~~~~  288 (537)
T 3fp2_A          214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL----QESINLHPT-PNSYIFLALTLAD  288 (537)
T ss_dssp             HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCCC-HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH----HHHHhcCCC-chHHHHHHHHHHH
Confidence            4578999999999999999943211      111222333333322 222221    112233444 6789999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  368 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN  368 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      ++++.+|+++.++..++.++...|++++|.      ..+..+....+.++..+
T Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~~~~~~~~  415 (537)
T 3fp2_A          369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAI------KQYDIAKRLEEVQEKIH  415 (537)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHCSSCS
T ss_pred             HHHHhCCCChHHHHHHHHHHHHhCCHHHHH------HHHHHHHHcCCcchhhH
Confidence            999999999999999999999999999998      77777777766665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.75  E-value=3.4e-17  Score=128.63  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      .....+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +...|++++|+..+++++..+|.+..++..++.++...|++++|.      ..+..+....+.++..+..++.++...
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI------DSFKIALGLRPNEGKVHRAIAFSYEQM  157 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH------HHHHHHHhcCccchHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999998      888888888888999888888886653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.74  E-value=2.4e-17  Score=123.75  Aligned_cols=124  Identities=27%  Similarity=0.310  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      +..+..++.+|.+++..|+|++|+..|++++..+|.++.+++++|.++...|++++|+.+++++++++|+++.+++.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhccccc
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~  209 (314)
                      ++...|++++|+..|+++++++|+     +..++..+..+........+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998     77888888888776654443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=2e-17  Score=142.11  Aligned_cols=197  Identities=12%  Similarity=0.038  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHh-------ch--------hhhhhhhccCCCCCCh-hhHHHHHHHHHH
Q psy4130          34 EVAVECLCKAYDIPDNIDPASNVDI--ESLFQLY-------YK--------DEVLQWYSNINFSPTE-EVKIEAEKYKNL   95 (314)
Q Consensus        34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~-------~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   95 (314)
                      ++|+..|++++..+|   .++..++  +.++...       +.        .++...    +.+++. ..|.....|..+
T Consensus        33 ~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~----~~rAl~~~~p~~~~~~~~~  105 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI----YERAISTLLKKNMLLYFAY  105 (308)
T ss_dssp             HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH----HHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH----HHHHHHHhCcccHHHHHHH
Confidence            799999999999999   5544444  3344321       22        122222    122333 366778899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPV-YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ-MNDY  173 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~  173 (314)
                      |..+...|++++|+..|+++++.+|.++. +|.++|.++...|++++|+..|+++++.+|.+..+|...+..... .|++
T Consensus       106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999987 999999999999999999999999999999998888877666443 7999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc--c--CChHHHHHHHHhhcC
Q psy4130         174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--L--SDPSIQQVFGELFAN  243 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~--~~p~~~~~l~~~~~~  243 (314)
                      ++|+..|+++++.+|+++.+|..++.++...|++++|.      ..+..+....  +  ..+.+|..+..+...
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~------~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR------VLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH------HHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH------HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998      7777777742  2  356788888777654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=9e-17  Score=136.96  Aligned_cols=148  Identities=12%  Similarity=-0.007  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH-
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG-  164 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg-  164 (314)
                      |.++.+++.+|.++...|++++|+..|++     |.++.++..+|.++..+|++++|+..++++++.+|++.......+ 
T Consensus        98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~  172 (291)
T 3mkr_A           98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW  172 (291)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence            55677788888888888888888888877     788888899999999999999999999999999998865444333 


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         165 -LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       165 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                       .++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|.      ..+..+....|.+|+.+..++.++..
T Consensus       173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~------~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE------GVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             23334588999999999999999999999999999999999999998      88999999999999998888877665


Q ss_pred             C
Q psy4130         244 P  244 (314)
Q Consensus       244 ~  244 (314)
                      .
T Consensus       247 ~  247 (291)
T 3mkr_A          247 L  247 (291)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.74  E-value=1.5e-17  Score=130.98  Aligned_cols=132  Identities=10%  Similarity=0.028  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-KLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      .++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..++..+|+..++++++++|+++.+++.+|.
T Consensus        38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~  116 (176)
T 2r5s_A           38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV  116 (176)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3456899999999999999999999999999999 8877766665533 3345556899999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                      ++...|++++|+..|+++++.+|+.  ..++..++.++..+|+.++|.      ..+...+.
T Consensus       117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~------~~y~~al~  172 (176)
T 2r5s_A          117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA------SKYRRQLY  172 (176)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH------HHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH------HHHHHHHH
Confidence            9999999999999999999999975  569999999999999999997      66655544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.73  E-value=2.8e-17  Score=148.87  Aligned_cols=133  Identities=23%  Similarity=0.269  Sum_probs=122.8

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHH
Q psy4130          79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---------------PVYYCNRAASNNKLKNYKLAL  143 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~  143 (314)
                      .......+..+..+..+|..++..|+|++|+..|++++.++|.+               ..+|+++|.||.++|+|++|+
T Consensus       258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34456778899999999999999999999999999999999998               689999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       144 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .+|++++.++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.++..+++++++.
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=2.9e-16  Score=113.91  Aligned_cols=115  Identities=27%  Similarity=0.444  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      .+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS  202 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  202 (314)
                      ...|++++|+..|+++++.+|+++.++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999988753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.73  E-value=4.3e-17  Score=120.21  Aligned_cols=102  Identities=12%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      .++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+++.+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHH
Q psy4130         171 NDYKAALEAYTKAAELDPNDPL  192 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~  192 (314)
                      |++++|+..|+++++++|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999998754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.73  E-value=2.5e-16  Score=116.77  Aligned_cols=131  Identities=29%  Similarity=0.369  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      .+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      .|++++|+..+++++...|.+..++..++.++...|++++|.      ..+..+...
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI------EYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH------HHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH------HHHHHHHcc
Confidence            999999999999999999999999999999999999999997      555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.72  E-value=5.1e-16  Score=113.69  Aligned_cols=117  Identities=34%  Similarity=0.485  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      +..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      ..|++++|+..|++++..+|+++.++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999987754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=1.5e-17  Score=126.15  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=114.0

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ..|++++..+|.+...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      ++.+++++|.++..+|++++|.      ..+..+....+.+|+.+.....+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAE------SGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCcchHHHHHHH
Confidence            9999999999999999999998      88888888888888766554444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=5e-17  Score=138.29  Aligned_cols=131  Identities=13%  Similarity=0.026  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      +.+++.+|.++...|++++|+..|++++..+|+....+...+..+...++.++|+..+++++..+|+++.+++.+|.++.
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            55788888888888888888888888888888766666777777888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         169 QMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                      ..|++++|+..|+++++.+|++  ..++.+++.++..+|+.++|.      ..++....
T Consensus       231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~------~~~r~al~  283 (287)
T 3qou_A          231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA------SXYRRQLY  283 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH------HHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH------HHHHHHHH
Confidence            8888888888888888888887  778888888888888888886      55555444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.71  E-value=5.3e-17  Score=138.43  Aligned_cols=138  Identities=13%  Similarity=0.059  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCc--
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKL-KNYKLALRDCQIAIKIDPHY--  156 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~--  156 (314)
                      +..+.++..+|.++...|++++|+.+|++++.+.|..      ..++.++|.+|... |++++|+.+|++++.+.|..  
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence            3457889999999999999999999999999987653      46899999999996 99999999999999998754  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         157 ----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-------YANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       157 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                          ..++.++|.++..+|++++|+.+|++++++.|++..       ++.+++.++..+|++++|.      ..+..+..
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~  227 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA------RTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH------HHHHGGGC
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHh
Confidence                567999999999999999999999999999987643       6789999999999999997      55554444


Q ss_pred             hccC
Q psy4130         226 KVLS  229 (314)
Q Consensus       226 ~~~~  229 (314)
                      ..+.
T Consensus       228 l~p~  231 (292)
T 1qqe_A          228 EDPN  231 (292)
T ss_dssp             C---
T ss_pred             hCCC
Confidence            4443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.71  E-value=1.3e-16  Score=125.41  Aligned_cols=134  Identities=15%  Similarity=0.167  Sum_probs=111.6

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+..|+++++.+|   .+                                   +.++..+|.++...|++
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p---~~-----------------------------------~~~~~~lg~~~~~~~~~   60 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANP---QN-----------------------------------SEQWALLGEYYLWQNDY   60 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCC---SC-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCC---Cc-----------------------------------HHHHHHHHHHHHHcCCH
Confidence            34557888888888888888888   33                                   34688899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAAS-NNKLKNY--KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      ++|+.+|++++..+|.++.++..+|.+ +...|++  ++|+..+++++..+|+++.+++.+|.++...|++++|+..|++
T Consensus        61 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  140 (177)
T 2e2e_A           61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK  140 (177)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            999999999999999999999999999 7888998  9999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHH
Q psy4130         183 AAELDPNDPLYANNM  197 (314)
Q Consensus       183 al~~~p~~~~~~~~l  197 (314)
                      +++++|++......+
T Consensus       141 al~~~p~~~~~~~~~  155 (177)
T 2e2e_A          141 VMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHHTCCTTSCHHHHH
T ss_pred             HHhhCCCCccHHHHH
Confidence            999999876544333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.5e-16  Score=119.39  Aligned_cols=121  Identities=21%  Similarity=0.282  Sum_probs=113.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA  159 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  159 (314)
                      ...+..+..++.+|..++..|++++|+..|+++++.+|++   ..++.++|.++...|++++|+.++++++.++|+++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3445678899999999999999999999999999999987   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      ++.+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999988887543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.70  E-value=1.4e-16  Score=135.50  Aligned_cols=154  Identities=14%  Similarity=0.030  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      |.....+..+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC--hHHHHHHHHhhcC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD--PSIQQVFGELFAN  243 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--p~~~~~l~~~~~~  243 (314)
                      .+...++.++|+..|+++++.+|+++.++++++.++...|++++|.      ..+..+.+..|.+  +..+..+..++..
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~------~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL------ELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH------HHHHHHHhcccccccchHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999      9999999998887  7788888888766


Q ss_pred             CC
Q psy4130         244 PG  245 (314)
Q Consensus       244 ~~  245 (314)
                      .+
T Consensus       268 ~g  269 (287)
T 3qou_A          268 LG  269 (287)
T ss_dssp             HC
T ss_pred             cC
Confidence            43

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.70  E-value=8e-17  Score=126.59  Aligned_cols=136  Identities=15%  Similarity=0.098  Sum_probs=121.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDY--KA  175 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~  175 (314)
                      +...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      |+..|+++++.+|+++.++..++.++...|++++|.      ..+..+....+.++....++..+
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAI------ELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH------HHHHHHHhhCCCCccHHHHHHHH
Confidence            999999999999999999999999999999999998      88888888888877665555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=8.1e-17  Score=138.27  Aligned_cols=189  Identities=12%  Similarity=0.020  Sum_probs=151.8

Q ss_pred             hcHHHHHHHHHHHcC-CCCCCCCCchh--hHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHH-HHHHHHHHHHhcCCH
Q psy4130          31 EGIEVAVECLCKAYD-IPDNIDPASNV--DIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAE-KYKNLGNTAMQQDKP  105 (314)
Q Consensus        31 ~~~~~Ai~~~~~al~-~~p~~~~~~~~--~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~  105 (314)
                      +.+++|+.+|+++++ ++|   .+..+  .++.++...+.. .+...+...    ....|.++. +|..+|.++...|++
T Consensus        78 ~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~~~~~~~~~~~~~  150 (308)
T 2ond_A           78 LFSDEAANIYERAISTLLK---KNMLLYFAYADYEESRMKYEKVHSIYNRL----LAIEDIDPTLVYIQYMKFARRAEGI  150 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred             cchHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhccccCccHHHHHHHHHHHHhcCH
Confidence            335999999999999 799   55433  444455554432 222222111    222333444 899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNK-LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      ++|+..|+++++.+|.+..+|...+.+... .|++++|+..|+++++.+|+++.+|..++.++...|++++|+..|++++
T Consensus       151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999888877766543 7999999999999999999999999999999999999999999999999


Q ss_pred             hh---CC-CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         185 EL---DP-NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       185 ~~---~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ..   +| +...+|..++..+...|+.++|.      ..+..+.+..|.+++
T Consensus       231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~------~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          231 TSGSLPPEKSGEIWARFLAFESNIGDLASIL------KVEKRRFTAFREEYE  276 (308)
T ss_dssp             HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHTTTTTS
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHcccccc
Confidence            95   55 37889999999999999999997      777777777787654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.70  E-value=2.7e-16  Score=128.77  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---HHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK---AYG  161 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  161 (314)
                      .+..++.+|..++..|+|++|+..|++++..+|.++   .+++.+|.+|...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            356799999999999999999999999999998864   68999999999999999999999999999999864   899


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcc
Q psy4130         162 RMGLAYTQ------------------MNDYKAALEAYTKAAELDPNDPLYA-----------------NNMQAAMSNLNN  206 (314)
Q Consensus       162 ~lg~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~  206 (314)
                      .+|.++..                  .|++++|+..|+++++.+|+++.++                 ..+|.++...|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999886                  5799999999999999999987554                 578889999999


Q ss_pred             cccCCCCCCCcchHHHHHHhccCCh---HHHHHHHHhhcCC
Q psy4130         207 SSSASGSGGVFPGLSEMSTKVLSDP---SIQQVFGELFANP  244 (314)
Q Consensus       207 ~~~A~~~~~~~~~~~~~~~~~~~~p---~~~~~l~~~~~~~  244 (314)
                      +++|+      ..+..+++..|.+|   +.+..++.++...
T Consensus       163 ~~~A~------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          163 WVAVV------NRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHHH------HHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH------HHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            99999      99999999999887   4566666666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.70  E-value=1.2e-15  Score=128.30  Aligned_cols=194  Identities=18%  Similarity=0.171  Sum_probs=159.5

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHH----hch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL----YYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      ....+++++|+++|+++++.++   ......++.++..    ..+ ..+..+......      ..++.+++.+|.++..
T Consensus        16 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~   86 (273)
T 1ouv_A           16 SYKEKDFTQAKKYFEKACDLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD------LNYSNGCHLLGNLYYS   86 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHhC
Confidence            3457899999999999998444   4556677777776    443 233333222211      1267899999999999


Q ss_pred             ----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----
Q psy4130         102 ----QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----  169 (314)
Q Consensus       102 ----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----  169 (314)
                          .+++++|+.+|+++++.+  ++.+++++|.+|..    .+++++|+.+|+++++.+  ++.+++.+|.++..    
T Consensus        87 g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~  162 (273)
T 1ouv_A           87 GQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGT  162 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             CCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC
Confidence                999999999999999974  88999999999999    999999999999999986  68899999999999    


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .+++++|+.+|+++++.+  ++.++..++.++..    .+++++|.      ..+..++..  .++.....++.++..
T Consensus       163 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~------~~~~~a~~~--~~~~a~~~l~~~~~~  230 (273)
T 1ouv_A          163 PKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEAL------ARYSKACEL--ENGGGCFNLGAMQYN  230 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHH------HHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHH------HHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            999999999999999874  68899999999999    99999997      666666654  457788888888776

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=6.3e-16  Score=129.51  Aligned_cols=197  Identities=10%  Similarity=-0.074  Sum_probs=120.3

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      .|......|++++|+.+|+++++.+|++ ......++.++...+.. .+....    .+.....|.++.++..+|.++..
T Consensus        49 l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~----~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           49 RGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAF----DSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHccCHHHHHHHH----HHHHhcCccccHHHHHHHHHHHH
Confidence            3445566899999999999999999943 12233344444444332 111111    11122344445666666666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|+++++.+|.+...+...+.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|+..++
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~  201 (275)
T 1xnf_A          124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLK  201 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHH
Confidence            6666666666666666666666544444433 4446666666666666666666544433 5555555666666666666


Q ss_pred             HHHhhCCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         182 KAAELDPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       182 ~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      +++...|..    ..++..+|.++...|++++|.      ..+..+....+.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT------ALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCCTTCH
T ss_pred             HHhcccccccccccHHHHHHHHHHHHcCCHHHHH------HHHHHHHhCCchhHH
Confidence            666555532    577888888888888888887      666666665554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.69  E-value=7.4e-16  Score=113.92  Aligned_cols=121  Identities=31%  Similarity=0.396  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-------AKA  159 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~  159 (314)
                      ..+..++.+|..+...|++++|+..|++++..+|.++.++.++|.++...|++++|+.++++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999877       899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS  208 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  208 (314)
                      ++.+|.++...|++++|+.+|++++..+| ++..+..++.+...+++..
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999 6889999999988776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=142.46  Aligned_cols=213  Identities=14%  Similarity=0.098  Sum_probs=160.9

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCC------CCC--chhhHHHHHHHhchhhhh-hhhccCC---C-CCChhhHHHH
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNI------DPA--SNVDIESLFQLYYKDEVL-QWYSNIN---F-SPTEEVKIEA   89 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~--~~~~l~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~~~~~   89 (314)
                      .|.....+|++++|+++|++++++.+..      +..  .+.+++.+|...++...+ .......   . ......+..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            3455567899999999999998762211      122  123456666666543222 2111000   0 0011122345


Q ss_pred             HHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQ--QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK---LKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        90 ~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      ..+..+|.++..  .++|++|+.+|+++++++|+++.++.+++.++..   .+++++|+..++++++++|+++.++..+|
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            678888877765  5679999999999999999999999999988655   46778999999999999999999999999


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         165 LAYTQM----NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       165 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      ..+...    +++++|+..|++++.++|.+..++.++|.++...|++++|.      ..+..+.+..|.++.++..++.+
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~lg~~  290 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI------ELLKKALEYIPNNAYLHCQIGCC  290 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH------HHHHHHHHhCCChHHHHHHHHHH
Confidence            877654    57889999999999999999999999999999999999999      88999999999999888777655


Q ss_pred             h
Q psy4130         241 F  241 (314)
Q Consensus       241 ~  241 (314)
                      +
T Consensus       291 y  291 (472)
T 4g1t_A          291 Y  291 (472)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=5.1e-17  Score=147.19  Aligned_cols=191  Identities=12%  Similarity=-0.038  Sum_probs=147.4

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc---h-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh----
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY---K-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ----  101 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----  101 (314)
                      .+++++|+++|+++++++|+++ .....++.++....   . ..+...    +.++...+|.++.++..+|..+..    
T Consensus       151 ~~~y~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~al~~----~~~al~l~p~~~~~~~~l~~~~~~~~~~  225 (472)
T 4g1t_A          151 GNQNERAKVCFEKALEKKPKNP-EFTSGLAIASYRLDNWPPSQNAIDP----LRQAIRLNPDNQYLKVLLALKLHKMREE  225 (472)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHSCCCCCTHHH----HHHHHHHCSSCHHHHHHHHHHHHHCC--
T ss_pred             cccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCchHHHHHHHH----HHHHhhcCCcchHHHHHHHHHHHHHHhh
Confidence            4679999999999999999442 12223333332221   1 111111    122344566677788888876654    


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM-----------  170 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------  170 (314)
                      .+++++|+.+|++++..+|.++.++.++|.+|...|++++|+..++++++.+|+++.++..+|.+|...           
T Consensus       226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~  305 (472)
T 4g1t_A          226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG  305 (472)
T ss_dssp             ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999999988653           


Q ss_pred             --------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         171 --------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       171 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                              +.+++|+..|+++++++|.+..++..+|.++...|++++|.      ..+..++...+.+.
T Consensus       306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~------~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE------YYFQKEFSKELTPV  368 (472)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH------HHHHHHHHSCCCHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH------HHHHHHHhcCCCCh
Confidence                    34788999999999999999999999999999999999998      77777766555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.69  E-value=1.2e-15  Score=113.05  Aligned_cols=117  Identities=14%  Similarity=0.045  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRM  163 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  163 (314)
                      ..++.+|.+++..|+|++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999988   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      |.++..+|++++|+..|++++...|+++.+...+..+....++
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999887777666554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.69  E-value=5.1e-16  Score=125.44  Aligned_cols=144  Identities=20%  Similarity=0.145  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ....++.+|..++..|++++|+..|++++  +| ++.+++++|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            45568899999999999999999999985  34 7889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDP----------------LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                      ...|++++|+..|++++++.|++.                .++.++|.++...|++++|.      ..+..+....+.+.
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~p~~~  155 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE------EQLALATSMKSEPR  155 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCCSGG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH------HHHHHHHHcCcccc
Confidence            999999999999999999888876                89999999999999999998      77777777666543


Q ss_pred             --HHHHHHHHh
Q psy4130         232 --SIQQVFGEL  240 (314)
Q Consensus       232 --~~~~~l~~~  240 (314)
                        .+...+..+
T Consensus       156 ~~~~~~a~~~~  166 (213)
T 1hh8_A          156 HSKIDKAMECV  166 (213)
T ss_dssp             GGHHHHHHHHH
T ss_pred             cchHHHHHHHH
Confidence              344444444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.68  E-value=4.6e-16  Score=147.69  Aligned_cols=149  Identities=11%  Similarity=-0.069  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAI--------DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK  158 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  158 (314)
                      .++..++..|   ...+++++|+..|++++        ..+|++..+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus       392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  468 (681)
T 2pzi_A          392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR  468 (681)
T ss_dssp             TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence            3344455544   78899999999999999        999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130         159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG  238 (314)
Q Consensus       159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~  238 (314)
                      +|+.+|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++ +      ..+..+.+..+.++..+..++
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~------~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H------KFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T------CHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H------HHHHHHHHhCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 9      999999999999999999999


Q ss_pred             HhhcCCC
Q psy4130         239 ELFANPG  245 (314)
Q Consensus       239 ~~~~~~~  245 (314)
                      .++...+
T Consensus       542 ~~~~~~g  548 (681)
T 2pzi_A          542 RARSAEG  548 (681)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8876654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=4.8e-16  Score=115.07  Aligned_cols=116  Identities=20%  Similarity=0.137  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130         120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA  199 (314)
Q Consensus       120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  199 (314)
                      |..+..+..+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCCCCCCcchHHHHHHhc------cCChHHHHHHHHhh
Q psy4130         200 AMSNLNNSSSASGSGGVFPGLSEMSTKV------LSDPSIQQVFGELF  241 (314)
Q Consensus       200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~p~~~~~l~~~~  241 (314)
                      ++..+|++++|.      ..+..+....      +.++.++..+..+.
T Consensus        81 ~~~~~~~~~~A~------~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           81 AQIAVKEYASAL------ETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHTTCHHHHH------HHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHH------HHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            999999999998      8888888888      88888887777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.68  E-value=4.7e-16  Score=136.88  Aligned_cols=129  Identities=23%  Similarity=0.372  Sum_probs=121.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID----------------CDNSNPVYYCNRAASNNKLKNYKLALRDC  146 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~  146 (314)
                      ......+..+..+|..++..|+|++|+..|+++++                .+|.+..+|.++|.+|..+|++++|+.++
T Consensus       217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  296 (370)
T 1ihg_A          217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  296 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34456678899999999999999999999999999                77888899999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       147 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++.
T Consensus       297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.68  E-value=1.3e-16  Score=125.44  Aligned_cols=150  Identities=13%  Similarity=0.041  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      ...+..+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            346888999999999999999999999999999999999999999999999999999999999999 8877766665533


Q ss_pred             -HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC--hHHHHHHHHhhcCCC
Q psy4130         169 -QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD--PSIQQVFGELFANPG  245 (314)
Q Consensus       169 -~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--p~~~~~l~~~~~~~~  245 (314)
                       ..++..+|+..|+++++++|+++.+++.++.++...|++++|.      ..+..+.+..|..  +..+..++.++...+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~------~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL------ELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH------HHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence             3344456899999999999999999999999999999999998      8888888777654  568888887766543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.67  E-value=1.2e-16  Score=139.15  Aligned_cols=145  Identities=23%  Similarity=0.231  Sum_probs=100.0

Q ss_pred             CChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHccCHHHHH
Q psy4130          81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----------------VYYCNRAASNNKLKNYKLAL  143 (314)
Q Consensus        81 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~  143 (314)
                      .....+..+..++.+|..++..|+|++|+..|++++.+.|.+.                 .+|+++|.||..+|+|++|+
T Consensus       171 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3456678899999999999999999999999999999999877                 48999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcccccCCCCCCCcchHHH
Q psy4130         144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN-LNNSSSASGSGGVFPGLSE  222 (314)
Q Consensus       144 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~  222 (314)
                      .+|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+... .+..+++.      ..+..
T Consensus       251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~------~~~~~  324 (338)
T 2if4_A          251 GHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK------EMYKG  324 (338)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence            999999999999999999999999999999999999999999999999999999998554 45555555      44445


Q ss_pred             HHHhccCCh
Q psy4130         223 MSTKVLSDP  231 (314)
Q Consensus       223 ~~~~~~~~p  231 (314)
                      ++...+.++
T Consensus       325 ~l~~~p~~~  333 (338)
T 2if4_A          325 IFKGKDEGG  333 (338)
T ss_dssp             ---------
T ss_pred             hhCCCCCCC
Confidence            555444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.67  E-value=1.1e-15  Score=123.41  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=118.1

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+++|++++  +|    +                                   +.+++.+|.++...|++
T Consensus        15 ~~~~~~~~~~A~~~~~~a~--~~----~-----------------------------------~~~~~~lg~~~~~~g~~   53 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQ--DP----H-----------------------------------SRICFNIGCMYTILKNM   53 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSS--SC----C-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHhCCHHHHHHHHHHHc--CC----C-----------------------------------hHHHHHHHHHHHHcCCH
Confidence            3446889999999999885  33    1                                   24799999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----------------KAYGRMGLAYTQ  169 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~  169 (314)
                      ++|+..|++++..+|.++.+++++|.++...|++++|+.+|++++++.|.+.                .+++.+|.++..
T Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888766                999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      .|++++|+..|+++++++|++.......+..
T Consensus       134 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~  164 (213)
T 1hh8_A          134 KEEWKKAEEQLALATSMKSEPRHSKIDKAME  164 (213)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCcccccchHHHHHH
Confidence            9999999999999999999875544444333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.66  E-value=4.1e-16  Score=118.37  Aligned_cols=100  Identities=17%  Similarity=0.237  Sum_probs=91.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY----------KLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      +.+.|++|+..|+++++++|.++.+|+++|.++...+++          ++|+..|++|++++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            456799999999999999999999999999999999875          5999999999999999999999999999988


Q ss_pred             C-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         171 N-----------DYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       171 g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      |           ++++|+.+|++|++++|++..++..+..+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5           89999999999999999987766665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=1.3e-15  Score=128.04  Aligned_cols=188  Identities=21%  Similarity=0.181  Sum_probs=152.7

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHH----hch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh---
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL----YYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ---  101 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---  101 (314)
                      .+++++|+.+|+++++.+.   ......++.+|..    ..+ ..+..+......      ..++.+++.+|.++..   
T Consensus        55 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~~~~  125 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD------LKYAEGCASLGGIYHDGKV  125 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH------cCCccHHHHHHHHHHcCCC
Confidence            8899999999999998864   5666777887776    443 233333222111      1367899999999999   


Q ss_pred             -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q psy4130         102 -QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND  172 (314)
Q Consensus       102 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~  172 (314)
                       .+++++|+.+|+++++.+  ++.+++++|.+|..    .+++++|+.+|+++++.  .++.+++.+|.++..    .++
T Consensus       126 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~  201 (273)
T 1ouv_A          126 VTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN  201 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC
T ss_pred             cccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc
Confidence             999999999999999976  68889999999999    99999999999999988  468999999999999    999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +++|+.+|+++++.+|  +.++..++.++..    .+++++|.      ..+..+...-+  +.....+..+
T Consensus       202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~------~~~~~a~~~~~--~~a~~~l~~~  263 (273)
T 1ouv_A          202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAI------ENFKKGCKLGA--KGACDILKQL  263 (273)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHH------HHHHHHHHHTC--HHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHH------HHHHHHHHcCC--HHHHHHHHHH
Confidence            9999999999999876  8899999999999    99999997      66666655533  3334444433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=5.5e-17  Score=138.26  Aligned_cols=193  Identities=16%  Similarity=0.087  Sum_probs=147.5

Q ss_pred             cchhhcHHHHHHHHHHHcCC--------CCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCC----ChhhHHHHHHHH
Q psy4130          27 AESKEGIEVAVECLCKAYDI--------PDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSP----TEEVKIEAEKYK   93 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~   93 (314)
                      ....|++++|+.+|++++++        .|.. ......++.++...+.. .+...........    ....+.....+.
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  115 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDV-ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN  115 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34588999999999999985        3311 11233445565555533 2222211111100    022477888999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCD--------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYA  157 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~  157 (314)
                      .+|.++...|++++|+.+|++++...        |....++.++|.++...|++++|+.++++++.+        +|...
T Consensus       116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  195 (311)
T 3nf1_A          116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA  195 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999874        556678999999999999999999999999998        77778


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------------------------------------CC
Q psy4130         158 KAYGRMGLAYTQMNDYKAALEAYTKAAEL-------------------------------------------------DP  188 (314)
Q Consensus       158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p  188 (314)
                      .++..+|.++...|++++|+..|++++++                                                 +|
T Consensus       196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  275 (311)
T 3nf1_A          196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP  275 (311)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence            89999999999999999999999999985                                                 35


Q ss_pred             CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      ....++..++.++...|++++|.      ..+..+.+.
T Consensus       276 ~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~l  307 (311)
T 3nf1_A          276 TVTTTLKNLGALYRRQGKFEAAE------TLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHH
Confidence            56678888899999999998886      555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.65  E-value=6.1e-15  Score=125.71  Aligned_cols=213  Identities=10%  Similarity=0.035  Sum_probs=154.5

Q ss_pred             HHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhc--h-hhhhhhhccCCCCCChhh
Q psy4130          11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYY--K-DEVLQWYSNINFSPTEEV   85 (314)
Q Consensus        11 ~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~--~-~~~~~~~~~~~~~~~~~~   85 (314)
                      .+++++...+..       .+..++|+.++.++|.++|   +...++..+  ++...+  . .+...+    ....+..+
T Consensus        34 ~~~~~~~a~~~~-------~e~s~~aL~~t~~~L~~nP---~~~taWn~R~~~L~~l~~~~~~eeL~~----~~~~L~~n   99 (306)
T 3dra_A           34 QIMGLLLALMKA-------EEYSERALHITELGINELA---SHYTIWIYRFNILKNLPNRNLYDELDW----CEEIALDN   99 (306)
T ss_dssp             HHHHHHHHHHHT-------TCCSHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTCTTSCHHHHHHH----HHHHHHHC
T ss_pred             HHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHHcccccHHHHHHH----HHHHHHHC
Confidence            445555554332       3444789999999999999   443333322  333322  1 111111    12234567


Q ss_pred             HHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCc
Q psy4130          86 KIEAEKYKNLGNTA----MQQ---DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK--LALRDCQIAIKIDPHY  156 (314)
Q Consensus        86 ~~~~~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~  156 (314)
                      |.+..+|+.++.++    ...   +++++++..++++++.+|.+..+|..++.++...+.++  +++.++.++++.+|.+
T Consensus       100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred             cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence            77888888888888    666   78889999999999999999999999999988888888  8899999999999999


Q ss_pred             HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc---
Q psy4130         157 AKAYGRMGLAYTQMND------YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV---  227 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---  227 (314)
                      ..+|..++.++...++      ++++++++.+++..+|+|..+|..++.++...|+..++.      ..+..-+-.+   
T Consensus       180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~------~~~~~~~~~~~~~  253 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL------EEFSLQFVDLEKD  253 (306)
T ss_dssp             HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG------HHHHHTTEEGGGT
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH------HHHHHHHHhccCC
Confidence            9999999988888887      888999999999999999999999999988888765554      3333322211   


Q ss_pred             -cCChHHHHHHHHhhcC
Q psy4130         228 -LSDPSIQQVFGELFAN  243 (314)
Q Consensus       228 -~~~p~~~~~l~~~~~~  243 (314)
                       +.++..+..+..++..
T Consensus       254 ~~~s~~al~~la~~~~~  270 (306)
T 3dra_A          254 QVTSSFALETLAKIYTQ  270 (306)
T ss_dssp             EESCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHc
Confidence             4566777777777664

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.65  E-value=2.8e-16  Score=142.99  Aligned_cols=125  Identities=28%  Similarity=0.396  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..+..+..+|..++..|+|++|+..|+++++.+|.++.+|.++|.+|..+|++++|+.+++++++++|+++.+++++|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhcccccCC
Q psy4130         167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA--MSNLNNSSSAS  211 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~  211 (314)
                      +..+|++++|+..|+++++++|++..++..++.+  +...|++++|+
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~  130 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  130 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999  88899999997

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.65  E-value=3.3e-16  Score=131.36  Aligned_cols=184  Identities=15%  Similarity=0.044  Sum_probs=135.3

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCC----CChhhHHHHHHHHHHHHHHHhc
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFS----PTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .....+++|++.+++++..++.........++.++...+.. .+..........    .....+.....+..+|.++...
T Consensus        19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~   98 (283)
T 3edt_B           19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR   98 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence            33444555555555555434211012233445566555543 222221111110    0123577889999999999999


Q ss_pred             CCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYAKAYGRMGLA  166 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~  166 (314)
                      |++++|+.+|++++..        +|....++.++|.++...|++++|+.++++++.+        +|....++..+|.+
T Consensus        99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  178 (283)
T 3edt_B           99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC  178 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999998        4667789999999999999999999999999999        77788999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC-------------------------------------------------CCCHHHHHHH
Q psy4130         167 YTQMNDYKAALEAYTKAAELD-------------------------------------------------PNDPLYANNM  197 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~~-------------------------------------------------p~~~~~~~~l  197 (314)
                      +...|++++|+..|++++++.                                                 |....++..+
T Consensus       179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (283)
T 3edt_B          179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL  258 (283)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999862                                                 3445678888


Q ss_pred             HHHHHHhcccccCC
Q psy4130         198 QAAMSNLNNSSSAS  211 (314)
Q Consensus       198 ~~~~~~~~~~~~A~  211 (314)
                      +.++...|++++|.
T Consensus       259 a~~~~~~g~~~~A~  272 (283)
T 3edt_B          259 GALYRRQGKLEAAH  272 (283)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            88888888888886

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=3.8e-15  Score=110.34  Aligned_cols=125  Identities=32%  Similarity=0.461  Sum_probs=115.9

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...|++++|+..|+++++.+|   .+                                   ...+..+|.++...|++++
T Consensus        12 ~~~~~~~~A~~~~~~~~~~~~---~~-----------------------------------~~~~~~~a~~~~~~~~~~~   53 (136)
T 2fo7_A           12 YKQGDYDEAIEYYQKALELDP---RS-----------------------------------AEAWYNLGNAYYKQGDYDE   53 (136)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred             HHcCcHHHHHHHHHHHHHcCC---cc-----------------------------------hhHHHHHHHHHHHhcCHHH
Confidence            457899999999999998877   33                                   2367888999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD  187 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (314)
                      |+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+
T Consensus        54 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy4130         188 PND  190 (314)
Q Consensus       188 p~~  190 (314)
                      |++
T Consensus       134 ~~~  136 (136)
T 2fo7_A          134 PRS  136 (136)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            863

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.64  E-value=6.2e-16  Score=113.11  Aligned_cols=110  Identities=17%  Similarity=0.122  Sum_probs=97.1

Q ss_pred             hcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDC---DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      ..|++++|+..|+++++.   +|.++.++.++|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            368999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      ..|++++...|+++.+......+....+..++.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~~  114 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADKLDET  114 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877777766666665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.64  E-value=1.2e-15  Score=129.90  Aligned_cols=168  Identities=15%  Similarity=0.048  Sum_probs=122.8

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCC-----CchhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHHHH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDP-----ASNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNLGN   97 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~-----~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~   97 (314)
                      .+...|++++|+++|++++++.+...+     .....++.+|...+.. ++...+.....  .........+..+..+|.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356689999999999999988653311     1233455566665433 22222111100  001112234678999999


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-------HHHHH
Q psy4130          98 TAMQQ-DKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK-------AYGRM  163 (314)
Q Consensus        98 ~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l  163 (314)
                      ++... |++++|+.+|++++++.|..      ..++.++|.++..+|++++|+.+|++++.+.|++..       ++.++
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            99996 99999999999999998754      467899999999999999999999999999987643       68899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      |.++..+|++++|+.+|+++++++|+....
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999999999999999999999999987653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.64  E-value=7.8e-17  Score=143.28  Aligned_cols=214  Identities=14%  Similarity=0.062  Sum_probs=162.3

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHHHHH
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNLGNT   98 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~   98 (314)
                      ......|++++|+.+|+++++..|++..   .....++.++...++. .+.........  ......+....++..+|.+
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            3445689999999999999999994321   1233455555555433 22222111110  0122367888999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHHhC--
Q psy4130          99 AMQQDKPEQAVIEYSKAIDC------DNSNPVYYCNRAASNNKLKN-----------------YKLALRDCQIAIKID--  153 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~--  153 (314)
                      +...|++++|+.+|++++..      .|....++.++|.+|...|+                 +++|+.++++++.+.  
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~  215 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD  215 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998      55667799999999999999                 999999999999874  


Q ss_pred             ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcccccCCCCCCCcchHHHH
Q psy4130         154 ----PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL------YANNMQAAMSNLNNSSSASGSGGVFPGLSEM  223 (314)
Q Consensus       154 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  223 (314)
                          +....++..+|.++...|++++|+.+|++++++.|....      ++..++.++...|++++|.      ..+..+
T Consensus       216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~a  289 (411)
T 4a1s_A          216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA------EHYKRT  289 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH------HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH------HHHHHH
Confidence                334578999999999999999999999999998775433      8999999999999999998      777666


Q ss_pred             HHhccCC------hHHHHHHHHhhcCC
Q psy4130         224 STKVLSD------PSIQQVFGELFANP  244 (314)
Q Consensus       224 ~~~~~~~------p~~~~~l~~~~~~~  244 (314)
                      ....+..      ...+..++.++...
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~  316 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLL  316 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            6655533      34555666665543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.64  E-value=5.6e-14  Score=120.50  Aligned_cols=164  Identities=10%  Similarity=0.017  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND-YKAALEAYT  181 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~  181 (314)
                      +++++.+++.++..+|.+..+|+.++.++...+  .+++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            788999999999999999999999999999998  48999999999999999999999999999999998 699999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHh--------------cccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCCCC
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNL--------------NNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQ  247 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~  247 (314)
                      ++++.+|.|..+|..++.++..+              +.++++.      ..+..++...|.|...|..+..++....+.
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEl------e~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~  243 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL------ELVQNAFFTDPNDQSAWFYHRWLLGAGSGR  243 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence            99999999999999999999887              3344555      677788888899999998887777664221


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHhhChH
Q psy4130         248 ATATDGSNTGIQALLNASQQIAAQLEQRNPE  278 (314)
Q Consensus       248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~  278 (314)
                      .    .........++.......++...+|+
T Consensus       244 ~----~~~~~~~~~l~~el~~~~elle~~pd  270 (331)
T 3dss_A          244 C----ELSVEKSTVLQSELESCKELQELEPE  270 (331)
T ss_dssp             G----GCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             c----ccchHHHHHHHHHHHHHHHHHhhCcc
Confidence            1    11123334455555566666677776

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.64  E-value=6.5e-16  Score=130.96  Aligned_cols=103  Identities=29%  Similarity=0.385  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      .+..++.+|..++..|+|++|+..|++++..+|.++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         168 TQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      ..+|++++|+..|+++++++|++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999976

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.63  E-value=2.2e-16  Score=132.43  Aligned_cols=163  Identities=20%  Similarity=0.146  Sum_probs=139.7

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...+++++|+.+|++++++-.   ..                           .....+..+.++..+|.++...|++++
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~---~~---------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~   61 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLE---KT---------------------------SGHDHPDVATMLNILALVYRDQNKYKE   61 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHH---HH---------------------------HCSSSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---Hh---------------------------cCCCCHHHHHHHHHHHHHHHHcccHHH
Confidence            346778888888888876543   10                           012346778899999999999999999


Q ss_pred             HHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcC
Q psy4130         108 AVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYAKAYGRMGLAYTQMN  171 (314)
Q Consensus       108 A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g  171 (314)
                      |+..|++++..        +|....++.++|.++...|++++|+..+++++.+        +|....++..+|.++...|
T Consensus        62 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  141 (283)
T 3edt_B           62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG  141 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence            99999999987        3566788999999999999999999999999998        5777899999999999999


Q ss_pred             CHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         172 DYKAALEAYTKAAEL--------DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       172 ~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      ++++|+.+|++++.+        +|....++..++.++...|++++|.      ..+..+...
T Consensus       142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~~l~~  198 (283)
T 3edt_B          142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE------TLYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHH
Confidence            999999999999999        7777889999999999999999997      666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=6e-15  Score=136.66  Aligned_cols=171  Identities=9%  Similarity=-0.022  Sum_probs=140.9

Q ss_pred             hcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC------
Q psy4130          31 EGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK------  104 (314)
Q Consensus        31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------  104 (314)
                      +.-++|++++++++.++|   +.                                   ..+|+.++.++...++      
T Consensus        43 ~~~eeal~~~~~~l~~nP---~~-----------------------------------~taW~~R~~~l~~l~~~~~~~~   84 (567)
T 1dce_A           43 ELDESVLELTSQILGANP---DF-----------------------------------ATLWNCRREVLQHLETEKSPEE   84 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCHHHHHHHHHHHHHCc---hh-----------------------------------HHHHHHHHHHHHhcccccchhh
Confidence            344788999999999999   44                                   2356666666666666      


Q ss_pred             ----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHH
Q psy4130         105 ----PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAAL  177 (314)
Q Consensus       105 ----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~  177 (314)
                          +++++..++++++.+|.+..+|+.++.++...+  ++++++.++.++++++|.+..+|..++.++...| .+++++
T Consensus        85 ~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el  164 (567)
T 1dce_A           85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL  164 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHH
Confidence                889999999999999999999999999999998  7799999999999999999999999999999998 889999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhccc--------------ccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSNLNNS--------------SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--------------~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +++.++++.+|.+..+|..++.++..+++.              +++.      ..+..++...|.|+..|..++.++..
T Consensus       165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel------~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL------ELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH------HHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHH------HHHHHHHhhCCCCccHHHHHHHHHhc
Confidence            999999999999999999999998886443              3333      55567777788888899988888766


Q ss_pred             CC
Q psy4130         244 PG  245 (314)
Q Consensus       244 ~~  245 (314)
                      .+
T Consensus       239 ~~  240 (567)
T 1dce_A          239 AE  240 (567)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.63  E-value=1.7e-15  Score=133.77  Aligned_cols=182  Identities=14%  Similarity=0.049  Sum_probs=138.0

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |......|++++|+++|++++++.+.                                ....+..+.++..+|.++...|
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------~~~~~~~a~~~~~lg~~~~~~~  157 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIF--------------------------------VKDRIEKAEFFFKMSESYYYMK  157 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGG--------------------------------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------------------------------CCCHHHHHHHHHHHHHHHHHcC
Confidence            33445677888888888888776441                                1123456778999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc
Q psy4130         104 KPEQAVIEYSKAIDCDNSN-------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMGLAYTQM  170 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~  170 (314)
                      ++++|+.+|++++.+.+..       ..++.++|.+|..+|++++|+.++++++.+.+..      ..++.++|.++..+
T Consensus       158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            9999999999999874433       4578899999999999999999999999885432      25888999999999


Q ss_pred             CCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc--CChHHH---HHHHH
Q psy4130         171 NDYKAALEAYTKAAE-----LD-PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL--SDPSIQ---QVFGE  239 (314)
Q Consensus       171 g~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~p~~~---~~l~~  239 (314)
                      |++++|+.+|+++++     .+ |....++.++|.++..+|++++|.      ..+..+.....  .+|...   ..++.
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~~~~~~~~~~~~~~~l~~  311 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH------EYHSKGMAYSQKAGDVIYLSEFEFLKS  311 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999998     46 777888999999999999999997      66666555443  355432   33444


Q ss_pred             hhcC
Q psy4130         240 LFAN  243 (314)
Q Consensus       240 ~~~~  243 (314)
                      ++..
T Consensus       312 ~~~~  315 (383)
T 3ulq_A          312 LYLS  315 (383)
T ss_dssp             HHTS
T ss_pred             HHhC
Confidence            4444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.62  E-value=1.6e-15  Score=109.00  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGL  165 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~  165 (314)
                      ++..+..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+.+++++++.+|.  +..+++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34568889999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHc-CCHHHHHHHHHHHHhhCCCCH
Q psy4130         166 AYTQM-NDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       166 ~~~~~-g~~~~A~~~~~~al~~~p~~~  191 (314)
                      ++... |++++|++++++++..+|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999 999999999999999999753

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.62  E-value=6e-15  Score=137.19  Aligned_cols=137  Identities=12%  Similarity=0.118  Sum_probs=113.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT  181 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  181 (314)
                      .|++++|+..|+++++.+|.+..+++++|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      ++++++|++..++.++|.++...|++++|.      ..+..+.+..+.++..+..++.++...
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAA------AAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998      889999999999999998888887664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.62  E-value=4.7e-15  Score=110.18  Aligned_cols=112  Identities=18%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-------LYA  194 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~  194 (314)
                      .+.++.++|.++++.|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++.       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999988753       578


Q ss_pred             HHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         195 NNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      .++|.++..+|++++|+      ..+...+.. ..||++...+..+
T Consensus        87 ~~lg~~~~~~~~~~~A~------~~~~kal~~-~~~~~~~~~l~~l  125 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAV------QWFHRSLSE-FRDPELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHTTCHHHHH------HHHHHHHHH-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH------HHHHHHHhh-CcCHHHHHHHHHh
Confidence            89999999999999997      776666653 4578877666544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=2.7e-16  Score=139.08  Aligned_cols=215  Identities=14%  Similarity=0.132  Sum_probs=157.9

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCC-----chhhHHHHHHHhch--------------------h-hhhhhhcc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPA-----SNVDIESLFQLYYK--------------------D-EVLQWYSN   76 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~l~~~~~~~~~--------------------~-~~~~~~~~   76 (314)
                      .|..+...|++++|+.+|++++++.|.....     ....++.++...+.                    . .+......
T Consensus        93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            4445566899999999999999887743221     23344445544444                    2 11111110


Q ss_pred             CC--CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          77 IN--FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV------YYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      ..  .......+.....+..+|.++...|++++|+.+|++++.+.|....      ++.++|.++...|++++|+.++++
T Consensus       173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (406)
T 3sf4_A          173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  252 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            00  0012235667788999999999999999999999999988665433      899999999999999999999999


Q ss_pred             HHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCC
Q psy4130         149 AIKIDPHY------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGV  216 (314)
Q Consensus       149 al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~  216 (314)
                      ++.+.|..      ..++..+|.++...|++++|+..|++++.+.+..      ..++..++.++...|++++|.     
T Consensus       253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-----  327 (406)
T 3sf4_A          253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM-----  327 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-----
T ss_pred             HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH-----
Confidence            99987765      6789999999999999999999999999986544      668999999999999999997     


Q ss_pred             cchHHHHHHhccCC------hHHHHHHHHhhcC
Q psy4130         217 FPGLSEMSTKVLSD------PSIQQVFGELFAN  243 (314)
Q Consensus       217 ~~~~~~~~~~~~~~------p~~~~~l~~~~~~  243 (314)
                       ..+..+.......      ...+..++.++..
T Consensus       328 -~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  359 (406)
T 3sf4_A          328 -HFAEKHLEISREVGDKSGELTARLNLSDLQMV  359 (406)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence             6666655543322      2344455555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=4.4e-16  Score=137.68  Aligned_cols=211  Identities=12%  Similarity=0.053  Sum_probs=157.5

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCC--CCCChhhHHHHHHHHHHHHHHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNIN--FSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      ....|++++|+.+|+++++..|+++.   .....++.++...++. .+........  .......+..+.++..+|.++.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            44689999999999999999994321   1233445555554432 2222211110  0112335677889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh--
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKN--------------------YKLALRDCQIAIKI--  152 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~--  152 (314)
                      ..|++++|+.+|++++.+.|..      ..++.++|.+|...|+                    +++|+..+.+++.+  
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986643      4589999999999999                    99999999999987  


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcccccCCCCCCCcchHHH
Q psy4130         153 ----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL------YANNMQAAMSNLNNSSSASGSGGVFPGLSE  222 (314)
Q Consensus       153 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  222 (314)
                          .|....++..+|.++...|++++|+.++++++++.|....      ++.+++.++...|++++|.      ..+..
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~  252 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS------EYYKK  252 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH------HHHHH
Confidence                3445678999999999999999999999999998765433      8999999999999999997      66666


Q ss_pred             HHHhccCC------hHHHHHHHHhhcC
Q psy4130         223 MSTKVLSD------PSIQQVFGELFAN  243 (314)
Q Consensus       223 ~~~~~~~~------p~~~~~l~~~~~~  243 (314)
                      +....+..      ...+..++.++..
T Consensus       253 al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          253 TLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            66555443      3345555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.61  E-value=6.2e-15  Score=114.36  Aligned_cols=110  Identities=15%  Similarity=0.059  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       119 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      ++.++..++.+|.++...|+|++|+.+|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++++++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         199 AAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      .++..+|++++|.      ..+..+.+..+.++..+
T Consensus        87 ~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           87 LARFDMADYKGAK------EAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHHHTTCHHHHH------HHHHHHHHHHSSSCCHH
T ss_pred             HHHHHccCHHHHH------HHHHHHHHhCCCchHHH
Confidence            9999999999999      88889998888888744

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=1.3e-14  Score=108.56  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=105.6

Q ss_pred             HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         117 DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       117 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      ..+|.++..++.+|.++...|++++|+..|++++.++|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCCCCcchHHHHHHhccC-----ChHHHHHHHHh
Q psy4130         197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS-----DPSIQQVFGEL  240 (314)
Q Consensus       197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~p~~~~~l~~~  240 (314)
                      +|.++..+|++++|.      ..+..+....+.     ++.++..+..+
T Consensus        83 l~~~~~~~~~~~~A~------~~~~~a~~~~p~~~~~~~~~~~~~l~~~  125 (137)
T 3q49_B           83 LGQCQLEMESYDEAI------ANLQRAYSLAKEQRLNFGDDIPSALRIA  125 (137)
T ss_dssp             HHHHHHHTTCHHHHH------HHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHH------HHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence            999999999999998      777777777666     55565555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.60  E-value=6.5e-16  Score=129.06  Aligned_cols=206  Identities=12%  Similarity=0.010  Sum_probs=158.6

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH---------HHHHhch-hhhhhhhccCCC-CC------Ch--------
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIES---------LFQLYYK-DEVLQWYSNINF-SP------TE--------   83 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~---------~~~~~~~-~~~~~~~~~~~~-~~------~~--------   83 (314)
                      ..++...|.++|.+++.++|   +....|++.         ++...+. .+.......... ..      ..        
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence            37899999999999999999   666666644         2322222 111111000000 00      00        


Q ss_pred             --hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHH
Q psy4130          84 --EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--AKA  159 (314)
Q Consensus        84 --~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~  159 (314)
                        ......+....++..+...|+|++|.+.|+..+...|.+. .++.+|.++.+.++|++|+..|++++...+..  ..+
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a  173 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA  173 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence              0011234567788999999999999999999999999888 99999999999999999999999887753221  458


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAELD--PN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV  236 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~  236 (314)
                      ++.+|.++..+|++++|+.+|++++.-.  |. .+++++.+|.++..+|+.++|.      ..+.++....|. +.++..
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~------~~l~~a~a~~P~-~~~~~a  246 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV------ALLEWLQTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHSCC-HHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCc-HHHHHH
Confidence            9999999999999999999999998654  55 6679999999999999999998      888888888888 999888


Q ss_pred             HHHhhcCCC
Q psy4130         237 FGELFANPG  245 (314)
Q Consensus       237 l~~~~~~~~  245 (314)
                      +.+.-..+.
T Consensus       247 L~~~~~~~~  255 (282)
T 4f3v_A          247 LKDPSYRLK  255 (282)
T ss_dssp             HHCTTCCCC
T ss_pred             HhCCCCCCC
Confidence            887755543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.60  E-value=1e-14  Score=134.45  Aligned_cols=197  Identities=13%  Similarity=0.055  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHcCCCCCCCCCchhhH--HHHHHH-------hchh--------hhhhhhccCCCCCCh-hhHHHHHHHHHH
Q psy4130          34 EVAVECLCKAYDIPDNIDPASNVDI--ESLFQL-------YYKD--------EVLQWYSNINFSPTE-EVKIEAEKYKNL   95 (314)
Q Consensus        34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~-------~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~   95 (314)
                      ++++..|++++..+|   .++.+++  +.++..       .++.        .+...    +.++.. ..|.....|..+
T Consensus       255 ~~a~~~y~~al~~~p---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~----~~~Al~~~~p~~~~l~~~~  327 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI----YERAISTLLKKNMLLYFAY  327 (530)
T ss_dssp             HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----HHHHTTTTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH----HHHHHHHhCcccHHHHHHH
Confidence            578899999999999   5444444  334443       2221        12222    122232 356678899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSNP-VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDY  173 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~  173 (314)
                      |..+...|++++|...|+++++..|.++ .+|.+++.++.+.|++++|+..|+++++..|.....+...+.+ +...|++
T Consensus       328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~  407 (530)
T 2ooe_A          328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  407 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999986 6999999999999999999999999999999888777776665 4469999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH----HHHHHHHhhcC
Q psy4130         174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS----IQQVFGELFAN  243 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~----~~~~l~~~~~~  243 (314)
                      ++|+..|+++++.+|+++.+|..++.++...|+.++|.      ..+..+....+.+|+    +|..+..+...
T Consensus       408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar------~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR------VLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH------HHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH------HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998      777777777666776    88777766554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.60  E-value=6.4e-16  Score=134.41  Aligned_cols=137  Identities=15%  Similarity=0.084  Sum_probs=129.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---------------AKAYGRMGL  165 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~  165 (314)
                      ..+++++|+..|++++..+|..+.++.++|.++...|++++|+.+|++++.++|.+               ..+|+++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++..+|++++|+.+|+++++++|++..+++++|.++..+|++++|.      ..+..+++..+.++.++..++.++..
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR------ADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999      99999999999999998888877554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=4.9e-16  Score=133.28  Aligned_cols=213  Identities=12%  Similarity=0.054  Sum_probs=158.0

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHHHHHH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNLGNTA   99 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~   99 (314)
                      .....|++++|+.+|+++++.+|+++.   .....++.++...+.. .+.........  ......+..+.++..+|.++
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   93 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL   93 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence            345689999999999999999994321   1222344455554433 22222111100  01123566788999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh-
Q psy4130         100 MQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKN--------------------YKLALRDCQIAIKI-  152 (314)
Q Consensus       100 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~-  152 (314)
                      ...|++++|+..|++++.+.+..      ..++..+|.++...|+                    +++|+..+++++.+ 
T Consensus        94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~  173 (338)
T 3ro2_A           94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV  173 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986543      3489999999999999                    99999999999887 


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchHH
Q psy4130         153 -----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGLS  221 (314)
Q Consensus       153 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  221 (314)
                           .|....++..+|.++...|++++|+..+++++++.+..      ..++..++.++...|++++|.      ..+.
T Consensus       174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~  247 (338)
T 3ro2_A          174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS------EYYK  247 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH------HHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH------HHHH
Confidence                 33445789999999999999999999999999886643      238999999999999999997      7776


Q ss_pred             HHHHhccCC------hHHHHHHHHhhcCC
Q psy4130         222 EMSTKVLSD------PSIQQVFGELFANP  244 (314)
Q Consensus       222 ~~~~~~~~~------p~~~~~l~~~~~~~  244 (314)
                      ......+..      +..+..++.++...
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~  276 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLL  276 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence            666655443      34555566665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=8.4e-15  Score=107.82  Aligned_cols=101  Identities=20%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      .++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         205 NNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       205 ~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                      |++++|.      ..+..+++..|.++
T Consensus        99 g~~~~A~------~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAAL------ASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHH------HHHHHHHC------
T ss_pred             CCHHHHH------HHHHHHHHhCcCCC
Confidence            9999998      66666665555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.59  E-value=4.3e-16  Score=138.46  Aligned_cols=215  Identities=12%  Similarity=0.075  Sum_probs=157.5

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCC---CC--chhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHH
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNID---PA--SNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNL   95 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~--~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~   95 (314)
                      |..+...|++++|+.+|++++++.....   ..  ....++.+|...+.. .+.........  ......+.....+..+
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  172 (411)
T 4a1s_A           93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL  172 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            3445568999999999999988732111   11  233445555555543 22222111110  0011256778899999


Q ss_pred             HHHHHhcCC-----------------HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130          96 GNTAMQQDK-----------------PEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI  152 (314)
Q Consensus        96 g~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  152 (314)
                      |.++...|+                 +++|+.+|++++.+.      +....++.++|.++...|++++|+.++++++.+
T Consensus       173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (411)
T 4a1s_A          173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI  252 (411)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999                 999999999998863      334568999999999999999999999999998


Q ss_pred             CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchH
Q psy4130         153 DPHYA------KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGL  220 (314)
Q Consensus       153 ~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  220 (314)
                      .|...      .++..+|.++...|++++|+..|++++.+.|..      ..++..++.++...|++++|.      ..+
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~  326 (411)
T 4a1s_A          253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI------EYH  326 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH------HHH
Confidence            77543      389999999999999999999999999988754      678999999999999999997      666


Q ss_pred             HHHHHhccCC------hHHHHHHHHhhcCC
Q psy4130         221 SEMSTKVLSD------PSIQQVFGELFANP  244 (314)
Q Consensus       221 ~~~~~~~~~~------p~~~~~l~~~~~~~  244 (314)
                      ..+.......      ...+..++.++...
T Consensus       327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~  356 (411)
T 4a1s_A          327 NRHLAIAQELGDRIGEARACWSLGNAHSAI  356 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence            6665544332      23455566665543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.59  E-value=9.3e-15  Score=128.92  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP---  154 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---  154 (314)
                      .+..+.+++.+|.++...|+++.|+.++++++...+.       .+.++.++|.+|...|++++|+.++++++.+.+   
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            4567788999999999999999999999999987543       245788999999999999999999999998743   


Q ss_pred             ---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         155 ---HYAKAYGRMGLAYTQMNDYKAALEAYTKAAE-----LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       155 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                         ....++.++|.++..+|++++|+.+|++++.     .+|....++.++|.++..+|++++|.      ..+..+...
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~  290 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF------QFIEEGLDH  290 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHH
Confidence               1346889999999999999999999999999     77878889999999999999999997      777666665


Q ss_pred             ccC
Q psy4130         227 VLS  229 (314)
Q Consensus       227 ~~~  229 (314)
                      ...
T Consensus       291 ~~~  293 (378)
T 3q15_A          291 ITA  293 (378)
T ss_dssp             CCT
T ss_pred             HHH
Confidence            543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.58  E-value=2.2e-15  Score=120.71  Aligned_cols=146  Identities=11%  Similarity=0.037  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-------------
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-------------  157 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------------  157 (314)
                      .....+......++|++|.+.++......+..+..+..+|.++...|+|++|+..|++++.+.|.++             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            4445566677788888888888877776677788999999999999999999999999999999887             


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         158 ---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       158 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                         .+++++|.++..+|++++|+.+|++++.++|++..+++.+|.++..+|++++|.      ..+..+....+.++.++
T Consensus        86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~  159 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK------ENLYKAASLNPNNLDIR  159 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH------HHHHHHHHHCCCcHHHH
Confidence               899999999999999999999999999999999999999999999999999998      88888888889999888


Q ss_pred             HHHHHhhc
Q psy4130         235 QVFGELFA  242 (314)
Q Consensus       235 ~~l~~~~~  242 (314)
                      ..++.+..
T Consensus       160 ~~l~~~~~  167 (198)
T 2fbn_A          160 NSYELCVN  167 (198)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=2.9e-14  Score=109.97  Aligned_cols=123  Identities=21%  Similarity=0.256  Sum_probs=110.4

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+.+|++++..+|   .+                                   +..+..+|.++...|++
T Consensus        22 ~~~~~~~~~~A~~~~~~al~~~~---~~-----------------------------------~~~~~~~a~~~~~~~~~   63 (166)
T 1a17_A           22 DYFKAKDYENAIKFYSQAIELNP---SN-----------------------------------AIYYGNRSLAYLRTECY   63 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST---TC-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCC---CC-----------------------------------hHHHHHHHHHHHHcCCH
Confidence            34568999999999999999988   33                                   34688999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA--YTQMNDYKAALEAYTKA  183 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~a  183 (314)
                      ++|+..|++++..+|.++.+++++|.++...|++++|+.++++++.++|.+..++..++.+  +...|++++|+..+.++
T Consensus        64 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            9999999999999999999999999999999999999999999999999999888555554  88899999999999887


Q ss_pred             Hhh
Q psy4130         184 AEL  186 (314)
Q Consensus       184 l~~  186 (314)
                      ..+
T Consensus       144 ~~~  146 (166)
T 1a17_A          144 RSV  146 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.58  E-value=4e-14  Score=122.00  Aligned_cols=169  Identities=7%  Similarity=-0.037  Sum_probs=117.9

Q ss_pred             hcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC-CHHHHH
Q psy4130          31 EGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD-KPEQAV  109 (314)
Q Consensus        31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~  109 (314)
                      +..++|++++++++.++|   ++.                                   .+|+.++.++...+ .+++++
T Consensus        68 e~se~AL~lt~~~L~~nP---~~y-----------------------------------taWn~R~~iL~~l~~~l~eEL  109 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNP---AHY-----------------------------------TVWQYRFSLLTSLNKSLEDEL  109 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCT---TCH-----------------------------------HHHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCc---hhH-----------------------------------HHHHHHHHHHHHhhhhHHHHH
Confidence            344678999999999999   442                                   35666666666666 477777


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------HHHHH
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKL-K-NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK--------AALEA  179 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~  179 (314)
                      ..+++++..+|.+..+|+.++.++... + ++++++.++.++++.+|++..+|..++.++...+.++        ++++.
T Consensus       110 ~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~  189 (349)
T 3q7a_A          110 RLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW  189 (349)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence            777777777777777777777777766 6 6777777777777777777777777777777766666        77777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcc-------cccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNLNN-------SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +.++++.+|.|..+|..++.+...+++       ++++.      ....+.+...|+|...|..+..++..
T Consensus       190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL------e~~~~aI~~~P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL------IYILKSIHLIPHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            777777777777777777777776665       23343      45555566666777777666666544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.57  E-value=8.5e-14  Score=118.43  Aligned_cols=152  Identities=9%  Similarity=-0.031  Sum_probs=127.3

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ....+++++|++.|+++++..|   ...                             ........++.+|.++...|+++
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~---~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEE---YHP-----------------------------EFQQFLQWQYYVAAYVLKKVDYE  132 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCC---CCH-----------------------------HHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHhhhHHHHHHHHHHHhcccc---CCh-----------------------------hHHHHHHHHHHHHHHHhcCCCHH
Confidence            3457889999999999888777   221                             11233445677999999999999


Q ss_pred             HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHcCCH
Q psy4130         107 QAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAI---KIDPHYA----KAYGRMGLAYTQMNDY  173 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~g~~  173 (314)
                      +|+..|++++...+..      ..++.++|.+|...|++++|+.+|++++   ...|++.    .+++++|.++..+|++
T Consensus       133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y  212 (293)
T 2qfc_A          133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY  212 (293)
T ss_dssp             HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence            9999999999875543      5689999999999999999999999999   5566643    6899999999999999


Q ss_pred             HHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccC
Q psy4130         174 KAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      ++|+.++++++.+.++      ...++.++|.++..+|++++|
T Consensus       213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            9999999999988643      267899999999999999999

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.56  E-value=2.9e-14  Score=115.57  Aligned_cols=185  Identities=12%  Similarity=0.010  Sum_probs=132.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC----CHHHHH
Q psy4130          35 VAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD----KPEQAV  109 (314)
Q Consensus        35 ~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~A~  109 (314)
                      +|+.+|+++.+...   ....+.++.+|....+ ..+..+....      ....++.+++.+|.++.. +    ++++|+
T Consensus         4 eA~~~~~~aa~~g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a------~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A            4 EPGSQYQQQAEAGD---RRAQYYLADTWVSSGDYQKAEYWAQKA------AAQGDGDALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             CTTHHHHHHHHTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHH------HHTTCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             hHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence            45566666655432   3344455555544332 2333332211      112356788899999888 6    899999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHH
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDP--HYAKAYGRMGLAYTQ----MNDYKAALEA  179 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~  179 (314)
                      .+|++++.  +.++.+++++|.+|..    .+++++|+.+|++++...|  .++.+++.||.+|..    .+++++|+.+
T Consensus        74 ~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           74 QLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            99999965  5788999999999987    8899999999999999888  458999999999998    8899999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhc------ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNLN------NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      |++++++ |.++.++++|+.++..-.      ++++|.      ..+...+..  .+++....+..+
T Consensus       152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~------~~~~~A~~~--g~~~A~~~l~~l  209 (212)
T 3rjv_A          152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL------HWLNVSCLE--GFDTGCEEFDRI  209 (212)
T ss_dssp             HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH------HHHHHHHHH--TCHHHHHHHHHH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH------HHHHHHHHc--CCHHHHHHHHHh
Confidence            9999988 667788999999987642      666775      444444432  456655555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.56  E-value=7.6e-15  Score=111.65  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-------YAK-----AYGRMGLAYTQMNDYKAALEAYTKAAEL----  186 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~----  186 (314)
                      +..+.++|.+++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|++++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567899999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         187 ---DPNDPLYA----NNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       187 ---~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                         +|++..+|    +++|.++..+|++++|+      ..+..++...|+|..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl------~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAM------PEFKKVVEMIEERKG  137 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHCCS
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH------HHHHHHHhcCCCcHH
Confidence               99999999    99999999999999999      888888887777653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.56  E-value=7.4e-15  Score=125.98  Aligned_cols=136  Identities=11%  Similarity=-0.012  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---  156 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  156 (314)
                      ...+..+..+|.++...|++++|+.+|++++.+.+.      ...++.++|.+|.. |++++|+.+|++++.+.|..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            345778999999999999999999999999998543      24678999999998 99999999999999997653   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         157 ---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       157 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                         ..++.++|.++..+|++++|+.+|++++.+.|.+      ..++..++.++..+|++++|.      ..+..+. ..
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~------~~~~~al-~~  224 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ------KCVRESY-SI  224 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHT-TS
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHh-CC
Confidence               5789999999999999999999999999987654      347888999999999999997      6666666 44


Q ss_pred             cC
Q psy4130         228 LS  229 (314)
Q Consensus       228 ~~  229 (314)
                      +.
T Consensus       225 p~  226 (307)
T 2ifu_A          225 PG  226 (307)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=9.7e-15  Score=128.93  Aligned_cols=123  Identities=13%  Similarity=0.022  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIK-----ID  153 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~  153 (314)
                      .+..+.++..+|.++...|++++|+.+|++++.+.+...      .++.++|.+|..+|++++|+.++++++.     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            556678999999999999999999999999998855432      5899999999999999999999999999     46


Q ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhccc
Q psy4130         154 -PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD-----PNDPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       154 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~  207 (314)
                       |..+.++..+|.++..+|++++|+.++++++++.     |.....+..++.++...|+.
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~  319 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE  319 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence             8888999999999999999999999999999984     33334467788888888883

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.55  E-value=1e-14  Score=132.73  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=119.1

Q ss_pred             hccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130          19 ELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNT   98 (314)
Q Consensus        19 ~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   98 (314)
                      .+...|......|++++|+++|+++++++|   .+                                   +.++..+|.+
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p---~~-----------------------------------~~~~~~lg~~   49 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNP---SN-----------------------------------AIYYGNRSLA   49 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---cc-----------------------------------HHHHHHHHHH
Confidence            455677788889999999999999999999   33                                   3579999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA--YTQMNDYKAA  176 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A  176 (314)
                      +...|++++|+..|+++++++|.++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+  +...|++++|
T Consensus        50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A  129 (477)
T 1wao_1           50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  129 (477)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998  8899999999


Q ss_pred             HHHHH-----------HHHhhCCCC
Q psy4130         177 LEAYT-----------KAAELDPND  190 (314)
Q Consensus       177 ~~~~~-----------~al~~~p~~  190 (314)
                      +..++           +++.++|+.
T Consensus       130 ~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          130 IAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             ------CCSTTTCCTTSSCCCCTTC
T ss_pred             hccccccchhHhhhhhhhccccccc
Confidence            99999           888887764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1e-13  Score=100.24  Aligned_cols=114  Identities=23%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM  201 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  201 (314)
                      .+..++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         202 SNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       202 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ...|++++|.      ..+..+....+.++.++..++.+.
T Consensus        83 ~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAK------RTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHH------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHH------HHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999998      888888888888998888877653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-13  Score=104.49  Aligned_cols=120  Identities=18%  Similarity=0.088  Sum_probs=113.3

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy4130         118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA  194 (314)
Q Consensus       118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  194 (314)
                      .+|.+...++.+|.++...|++++|+..|+++++.+|++   ..+++.+|.++...|++++|+..|++++.++|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457788999999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         195 NNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ..++.++...|++++|.      ..+..+....+.++.++..+..+...
T Consensus       103 ~~~a~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAV------LDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHH------HHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHH------HHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999998      88889999999999999988887554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=4.7e-14  Score=104.50  Aligned_cols=118  Identities=17%  Similarity=0.183  Sum_probs=110.3

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130         119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       119 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  198 (314)
                      .|.....++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130         199 AAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA  242 (314)
Q Consensus       199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~  242 (314)
                      .++...|++++|.      ..+.......+.++.++..++.++.
T Consensus        92 ~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           92 AALEAMKDYTKAM------DVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHTTCHHHHH------HHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHH------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999999998      8888888888888888888777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.55  E-value=4.6e-15  Score=127.15  Aligned_cols=189  Identities=16%  Similarity=0.176  Sum_probs=128.4

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCC-----chhhHHHHHHHhch--------------------h-hhhhhhcc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPA-----SNVDIESLFQLYYK--------------------D-EVLQWYSN   76 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~l~~~~~~~~~--------------------~-~~~~~~~~   76 (314)
                      .|......|++++|+.+|++++++.|.....     ....++.++...+.                    . .+......
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            3444556788888888888888776643221     22333444444333                    1 11111100


Q ss_pred             CC--CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          77 IN--FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      ..  .......+.....+..+|.++...|++++|+..|++++...+..      ..++.++|.++...|++++|+..+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            00  00011245556778888888888888888888888888765432      23788888888888888888888888


Q ss_pred             HHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCC
Q psy4130         149 AIKIDPHY------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       149 al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++.+.+..      ..++..+|.++...|++++|+..+++++.+.+..      ..++..++.++...|++++|.
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            88876654      6778888888888888888888888888875532      447788888888888888886

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.54  E-value=7.2e-14  Score=118.89  Aligned_cols=159  Identities=9%  Similarity=-0.013  Sum_probs=127.3

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..+++++|++.|+++++..+   ..+.                             .......+..+|.++...+++++|
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~---~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~A  134 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEE---YHPE-----------------------------FQQFLQWQYYVAAYVLKKVDYEYC  134 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCC---CCHH-----------------------------HHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred             HHhhHHHHHHHHHHHhcccc---CChH-----------------------------HHHHHHHHHHHHHHHHcccCHHHH
Confidence            46788888899888888666   2211                             112234566689999999999999


Q ss_pred             HHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHH
Q psy4130         109 VIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKI-------DPHYAKAYGRMGLAYTQMNDYKA  175 (314)
Q Consensus       109 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~  175 (314)
                      +.+|++++...+..      ..++.++|.+|..+|++++|+.+|+++++.       .+....+++++|.++..+|++++
T Consensus       135 i~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~  214 (293)
T 3u3w_A          135 ILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE  214 (293)
T ss_dssp             HHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999965432      337899999999999999999999999953       12334689999999999999999


Q ss_pred             HHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcc-cccCCCCCCCcchHHHHHH
Q psy4130         176 ALEAYTKAAELDPND------PLYANNMQAAMSNLNN-SSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       176 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~  225 (314)
                      |+.++++++++.+..      ..++.++|.++..+|+ +++|.      ..+..+..
T Consensus       215 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~------~~~~~Al~  265 (293)
T 3u3w_A          215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE------DAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHH------HHHHHHHH
Confidence            999999999987544      7899999999999996 58997      55555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=2.1e-14  Score=102.96  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=99.7

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q psy4130         118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYAN  195 (314)
Q Consensus       118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~  195 (314)
                      ++|+++.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHh-cccccCCCCCCCcchHHHHHHhccCCh
Q psy4130         196 NMQAAMSNL-NNSSSASGSGGVFPGLSEMSTKVLSDP  231 (314)
Q Consensus       196 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~p  231 (314)
                      .++.++... |++++|.      ..+.......+.++
T Consensus        81 ~l~~~~~~~~~~~~~A~------~~~~~~~~~~p~~~  111 (112)
T 2kck_A           81 AKADALRYIEGKEVEAE------IAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHTTCSSCSHHHH------HHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHhCCHHHHH------HHHHHHhhcccCCC
Confidence            999999999 9999997      66666666555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=4.6e-14  Score=109.15  Aligned_cols=112  Identities=13%  Similarity=0.076  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKI------------------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +..+..+|..++..|+|++|+..|.+++.+                  +|.++.+|+++|.++..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77788999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh-HHHHHHHHh
Q psy4130         185 ELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP-SIQQVFGEL  240 (314)
Q Consensus       185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~  240 (314)
                      .++|+++.+++.+|.++..+|++++|.      ..+..+....|.++ .++..+..+
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~------~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAE------EDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHH------HHHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999999999999999999999998      88888998888888 666666655

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.54  E-value=3.2e-13  Score=115.03  Aligned_cols=198  Identities=8%  Similarity=-0.055  Sum_probs=158.8

Q ss_pred             hcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HH----HHh---ch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130          31 EGIEVAVECLCKAYDIPDNIDPASNVDIES--LF----QLY---YK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM  100 (314)
Q Consensus        31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~----~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  100 (314)
                      .++++++.++++++..+|   .+..++..+  ++    ...   .. .+...    ...+....+|.+..+|...+.+..
T Consensus        83 ~~~~eeL~~~~~~L~~nP---k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~----~~~~~l~~~pkny~aW~~R~~vl~  155 (306)
T 3dra_A           83 RNLYDELDWCEEIALDNE---KNYQIWNYRQLIIGQIMELNNNDFDPYREFD----ILEAMLSSDPKNHHVWSYRKWLVD  155 (306)
T ss_dssp             SCHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH----HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCc---ccHHHHHHHHHHHHHHHHhccccCCHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            389999999999999999   554444433  33    222   11 11111    223345678899999999999999


Q ss_pred             hcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130         101 QQDKPE--QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN------YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus       101 ~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      ..+.++  +++..++++++.+|.+..+|..++.++...+.      ++++++++.+++..+|.+..+|+.++.++...|+
T Consensus       156 ~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          156 TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            999999  99999999999999999999999999999988      9999999999999999999999999999999998


Q ss_pred             HHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH-hccCChHHHHHHHHhh
Q psy4130         173 YKA-ALEAYTKAAELD---PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST-KVLSDPSIQQVFGELF  241 (314)
Q Consensus       173 ~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~p~~~~~l~~~~  241 (314)
                      ..+ ....+.+++.++   |.++.++..++.++.+.|+.++|+      ..+..+.. .-|-+...|......+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~------~~~~~l~~~~Dpir~~yW~~~~~~l  303 (306)
T 3dra_A          236 SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR------TVYDLLKSKYNPIRSNFWDYQISKL  303 (306)
T ss_dssp             CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH------HHHHHHHhccChHHHHHHHHHHhhc
Confidence            555 556777788776   889999999999999999999997      55555443 2444556777666543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=3.3e-14  Score=107.89  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=80.9

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC-
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK-  104 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-  104 (314)
                      .....+.+++|+++|+++++++|   .+                                   +.+|..+|.++...++ 
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~P---~~-----------------------------------aea~~n~G~~l~~l~~~   52 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSNP---LD-----------------------------------ADNLTRWGGVLLELSQF   52 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHCC---CC-----------------------------------HHHHHHHHHHHHHhccc
Confidence            34567889999999999999999   44                                   3356666666666655 


Q ss_pred             ---------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCcH
Q psy4130         105 ---------PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-----------NYKLALRDCQIAIKIDPHYA  157 (314)
Q Consensus       105 ---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~  157 (314)
                               +++|+..|+++|+++|++..+|+++|.+|..+|           ++++|+.+|++|++++|++.
T Consensus        53 ~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           53 HSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             chhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                     569999999999999999999999999999885           89999999999999999975

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=1.9e-13  Score=99.71  Aligned_cols=118  Identities=27%  Similarity=0.320  Sum_probs=107.5

Q ss_pred             cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         118 CDNSN-PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       118 ~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      .+|.. ..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++..+|.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35555 77899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ++.++...|++++|.      ..+..+....+.++..+..++.+.
T Consensus        83 la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           83 LGNAYYKQGDYDEAI------EYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHH------HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999998      888888888889998888777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.53  E-value=6.7e-14  Score=102.15  Aligned_cols=102  Identities=16%  Similarity=-0.060  Sum_probs=87.6

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      .|++++|+.+|++++++.+   .                                +|..+.++..+|.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~---~--------------------------------~p~~~~~~~~lg~~~~~~~~~~~A~   47 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGL---Q--------------------------------GKDLAECYLGLGSTFRTLGEYRKAE   47 (117)
T ss_dssp             ----CCCHHHHHHHHSSCC---C--------------------------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCC---C--------------------------------CccHHHHHHHHHHHHHHcCCHHHHH
Confidence            6788999999999999865   1                                2355778999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130         110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA  166 (314)
Q Consensus       110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  166 (314)
                      ..|+++++.+|+++.+++++|.++...|++++|+..+++++..+|+++........+
T Consensus        48 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           48 AVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998765444333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.52  E-value=1.1e-13  Score=101.87  Aligned_cols=120  Identities=18%  Similarity=0.193  Sum_probs=111.6

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy4130         118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM  197 (314)
Q Consensus       118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  197 (314)
                      .+|.++..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         198 QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +.++...|++++|.      ..+..+....+.++..+..++.++..
T Consensus        87 ~~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           87 GLALSSLNKHVEAV------AYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHTTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHH------HHHHHHHhcCccchHHHHHHHHHHHH
Confidence            99999999999998      88888888888999988888877544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=4.2e-15  Score=134.57  Aligned_cols=137  Identities=13%  Similarity=0.060  Sum_probs=123.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q psy4130         101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---------------AKAYGRMGL  165 (314)
Q Consensus       101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~  165 (314)
                      ..++|++|+..|+.++...|..+..+.++|.+++..|+|++|+.+|+++++++|.+               ..+|+++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45677888888999999999999999999999999999999999999999999998               799999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++..+|++++|+.+|+++++++|++..+++++|.++..+|++++|+      ..+..+.+..+.++.++..++.++..
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK------GDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999      88888888888888888888777544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.52  E-value=5.7e-14  Score=119.46  Aligned_cols=159  Identities=16%  Similarity=0.100  Sum_probs=135.1

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      +......|..+..+..+|.++...|++++|+..|++++++        .|....++..+|.++...|++++|+.++++++
T Consensus        17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4556677889999999999999999999999999999995        66778899999999999999999999999999


Q ss_pred             Hh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcccccCCCCC
Q psy4130         151 KI--------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD--------PNDPLYANNMQAAMSNLNNSSSASGSG  214 (314)
Q Consensus       151 ~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~  214 (314)
                      .+        +|....++..+|.++...|++++|+..|++++++.        |....++..++.++...|++++|.   
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~---  173 (311)
T 3nf1_A           97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE---  173 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH---
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH---
Confidence            88        46667899999999999999999999999999884        556778999999999999999997   


Q ss_pred             CCcchHHHHHHhc--------cCChHHHHHHHHhhcC
Q psy4130         215 GVFPGLSEMSTKV--------LSDPSIQQVFGELFAN  243 (314)
Q Consensus       215 ~~~~~~~~~~~~~--------~~~p~~~~~l~~~~~~  243 (314)
                         ..+..+....        +..+..+..++.++..
T Consensus       174 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  207 (311)
T 3nf1_A          174 ---YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK  207 (311)
T ss_dssp             ---HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence               6666666552        2223455666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.51  E-value=1.8e-13  Score=101.16  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNM  197 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  197 (314)
                      ..++.+|.++...|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3478899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         198 QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      |.++..+|++++|.      ..+..+....|.++........+
T Consensus        83 a~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           83 GLSQYGEGKNTEAQ------QTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHHTTCHHHHH------HHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHH------HHHHHHHHHCCCChHHHHHHHHH
Confidence            99999999999998      88888999888888776555544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.51  E-value=1.9e-13  Score=99.24  Aligned_cols=102  Identities=15%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ++|+..|+++++.+|.++.+++++|.++...|++++|+.+|++++.++|.++.+|+.+|.++...|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHHHhccc
Q psy4130         186 LDPN--DPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       186 ~~p~--~~~~~~~l~~~~~~~~~~  207 (314)
                      ++|.  +......+...+..+++.
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhccc
Confidence            9884  556666666666665543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=8.2e-13  Score=106.97  Aligned_cols=145  Identities=12%  Similarity=-0.016  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK----NYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      .++.+++.+|.++...+++++|+.+|+++++.  .++.+++++|.+|.. +    ++++|+.+|++++.  +.++.++++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            56789999999999999999999999999875  689999999999998 7    99999999999965  578999999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         163 MGLAYTQ----MNDYKAALEAYTKAAELDP--NDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       163 lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ||.++..    .+++++|+.+|+++++..|  .++.++++|+.++..    .+++++|.      ..+..++.. +.++.
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~------~~~~~A~~~-~~~~~  163 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS------EYFKGSSSL-SRTGY  163 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH------HHHHHHHHT-SCTTH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH------HHHHHHHHc-CCCHH
Confidence            9999998    8999999999999999988  358999999999999    78888887      666666655 77888


Q ss_pred             HHHHHHHhhcC
Q psy4130         233 IQQVFGELFAN  243 (314)
Q Consensus       233 ~~~~l~~~~~~  243 (314)
                      ....++.++..
T Consensus       164 a~~~Lg~~y~~  174 (212)
T 3rjv_A          164 AEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            88888888765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.48  E-value=2.6e-14  Score=102.72  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANN  196 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  196 (314)
                      +..+..+|.++...|++++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            44566666666666666666666666666666666666666666666666666766666666666666      666777


Q ss_pred             HHHHHHHhcccccCCCC
Q psy4130         197 MQAAMSNLNNSSSASGS  213 (314)
Q Consensus       197 l~~~~~~~~~~~~A~~~  213 (314)
                      ++.++..+|+++.|+..
T Consensus        84 ~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHhHhhhHhH
Confidence            77777777777666633

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.48  E-value=6.1e-13  Score=95.43  Aligned_cols=95  Identities=27%  Similarity=0.349  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYG  161 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  161 (314)
                      .+..++.+|.+++..|+|++|+..|+++++.+|.++.+++++|.++..+|++++|+.+++++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q psy4130         162 RMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      .+|.++..+|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988888766554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=3.6e-14  Score=123.42  Aligned_cols=149  Identities=16%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .|......+++++|+.+|++++.+.|   .+..      +.........            .......+++++|.++...
T Consensus       185 ~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~------~~~~~~~~~~------------~~~l~~~~~~nla~~~~~~  243 (338)
T 2if4_A          185 DGNSLFKEEKLEEAMQQYEMAIAYMG---DDFM------FQLYGKYQDM------------ALAVKNPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHTCSSSCCHHHHHHHHHHHHHSC---HHHH------HTCCHHHHHH------------HHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhc---cchh------hhhcccHHHH------------HHHHHHHHHHHHHHHHHHc
Confidence            34455678999999999999999999   3321      0000000000            0011224799999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDYKAALEAYT  181 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~  181 (314)
                      ++|++|+.+|++++.++|.+..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ....+..+.+...|.
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998 455677888999999


Q ss_pred             HHHhhCCCCHH
Q psy4130         182 KAAELDPNDPL  192 (314)
Q Consensus       182 ~al~~~p~~~~  192 (314)
                      +++...|+++.
T Consensus       324 ~~l~~~p~~~~  334 (338)
T 2if4_A          324 GIFKGKDEGGA  334 (338)
T ss_dssp             -----------
T ss_pred             HhhCCCCCCCC
Confidence            99999998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.47  E-value=1.9e-13  Score=120.52  Aligned_cols=182  Identities=9%  Similarity=-0.011  Sum_probs=137.5

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCC-----chhhHHHHHHHhchhh-hhhhhcc---CCCCCChhhHHHHHHHHHH
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPA-----SNVDIESLFQLYYKDE-VLQWYSN---INFSPTEEVKIEAEKYKNL   95 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~l~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~   95 (314)
                      ......|++++|+.+|++++++.+...+.     ....++.+|...+... +......   .........+..+.++..+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            34567999999999999999986644232     2334455665555432 2221111   1111122245678899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCcHHHHHHHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIK-----IDPHYAKAYGRMG  164 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg  164 (314)
                      |.++...|++++|+.+|++++.+.+.      ...++.++|.+|..+|++++|+.++++++.     .+|..+.+++.+|
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  268 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence            99999999999999999999986431      245789999999999999999999999999     7888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhcc
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLNN  206 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~  206 (314)
                      .++..+|++++|+.++++++++.+.     .......++.++...++
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~  315 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD  315 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999998543     34455666666666666

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.46  E-value=3.5e-13  Score=102.91  Aligned_cols=135  Identities=18%  Similarity=0.182  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--  156 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  156 (314)
                      ....+.++..+|.++...|++++|+.+|++++...+...      .++.++|.++...|++++|+..+++++.+.+..  
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            345678899999999999999999999999998765422      478999999999999999999999999986543  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         157 ----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       157 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                          ..++..+|.++...|++++|+..+++++.+.+.      ...++..++.++...|++++|.      ..+....+
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~a~~  157 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM------HFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH------HHHHHHHH
Confidence                578999999999999999999999999987432      2467899999999999999997      55555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.45  E-value=3.5e-12  Score=109.40  Aligned_cols=179  Identities=11%  Similarity=-0.048  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQD--KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN-YKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ..+|...+.++...+  .+++++.++.++++.+|.+..+|..++.+....|. ++++++++.+++..+|.+..+|..++.
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~  187 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC  187 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            457888888888888  48999999999999999999999999999999998 699999999999999999999999999


Q ss_pred             HHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c----------ccccCCCCCCCcchH
Q psy4130         166 AYTQM--------------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL-N----------NSSSASGSGGVFPGL  220 (314)
Q Consensus       166 ~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~----------~~~~A~~~~~~~~~~  220 (314)
                      ++...              +.++++++++.+++.++|++..+|+.+..++... |          .+++++      ..+
T Consensus       188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el------~~~  261 (331)
T 3dss_A          188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL------ESC  261 (331)
T ss_dssp             HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH------HHH
T ss_pred             HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH------HHH
Confidence            99887              5689999999999999999999998666665554 2          344454      555


Q ss_pred             HHHHHhccCChHHHHHHHHhhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q psy4130         221 SEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQ  285 (314)
Q Consensus       221 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l~~  285 (314)
                      .++....|.+  .|.+++.+........  . +       .-........++...+|-....-.+
T Consensus       262 ~elle~~pd~--~w~l~~~~~~~~~~~~--~-~-------~~~~~~~~l~~l~~~Dp~r~~~y~d  314 (331)
T 3dss_A          262 KELQELEPEN--KWCLLTIILLMRALDP--L-L-------YEKETLQYFSTLKAVDPMRAAYLDD  314 (331)
T ss_dssp             HHHHHHCTTC--HHHHHHHHHHHHHHCT--T-T-------THHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHhhCccc--chHHHHHHHHHHhhcc--c-c-------cHHHHHHHHHHHHHhCcchhhHHHH
Confidence            5666666655  4655554422100000  0 1       1223455677778888875554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.45  E-value=2.7e-12  Score=117.05  Aligned_cols=189  Identities=15%  Similarity=0.050  Sum_probs=140.1

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHH----hch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc--
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL----YYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ--  102 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--  102 (314)
                      .+++++|+.+|+++++..+   ....+.++.+|..    ..+ ..+..+......      ..++.+++.+|.++...  
T Consensus       236 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~------~~~~~a~~~Lg~~y~~~~~  306 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE------QGNSDGQYYLAHLYDKGAE  306 (490)
T ss_dssp             CCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHCBT
T ss_pred             CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHcCCC
Confidence            5677778888887777655   4555666666654    221 223333222211      13456788888888887  


Q ss_pred             ---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q psy4130         103 ---DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND  172 (314)
Q Consensus       103 ---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~  172 (314)
                         +++++|+.+|+++++.  .++.+++++|.+|...|   ++++|+.+|+++++.  .++.+++.+|.++..    .++
T Consensus       307 g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~  382 (490)
T 2xm6_A          307 GVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD  382 (490)
T ss_dssp             TBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence               8899999999998876  46778899999988855   888999999999887  678899999999998    889


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccC---ChHHHHHHHH
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLS---DPSIQQVFGE  239 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~---~p~~~~~l~~  239 (314)
                      +++|+.+|+++++..  ++.++.+++.++..    .+++++|.      ..+..+...-++   ++..+..++.
T Consensus       383 ~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~------~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAW------AWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH------HHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHH------HHHHHHHHCCCCCcCCHHHHHHHHh
Confidence            999999999998754  68899999999988    78888887      777777777644   5555554444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.45  E-value=5.9e-13  Score=98.01  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=102.1

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q psy4130         121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND-------PLY  193 (314)
Q Consensus       121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~  193 (314)
                      ..+..++.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++...|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999999877       889


Q ss_pred             HHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         194 ANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +..++.++...|++++|.      ..+..+....+ ++.++..+..+
T Consensus        82 ~~~la~~~~~~~~~~~A~------~~~~~~~~~~~-~~~~~~~l~~~  121 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAI------HFYNKSLAEHR-TPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHH------HHHHHHHHHCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHH------HHHHHHHHhCC-CHHHHHHHHHH
Confidence            999999999999999997      77777776655 78777776655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.44  E-value=3.7e-13  Score=121.63  Aligned_cols=195  Identities=10%  Similarity=0.088  Sum_probs=138.9

Q ss_pred             hcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhh----hhhccCC---------------------CCC----
Q psy4130          31 EGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVL----QWYSNIN---------------------FSP----   81 (314)
Q Consensus        31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~---------------------~~~----   81 (314)
                      +++++|+.+|+++++..+   ....+.++.+|.........    .+.....                     .+.    
T Consensus        88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a  164 (452)
T 3e4b_A           88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence            578899999999988666   56677777766654431100    0000000                     000    


Q ss_pred             ----ChhhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHH
Q psy4130          82 ----TEEVKIEAEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL----KNYKLALRDCQIAI  150 (314)
Q Consensus        82 ----~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al  150 (314)
                          ......++.+++.+|.++...|   ++++|+.+|+++....|..+..++++|.+|...    +++++|+.+|+++.
T Consensus       165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence                0000123447888999999999   999999999999999999988889999998765    68999999999988


Q ss_pred             HhCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----ccccCCCCCCCcchHHH
Q psy4130         151 KIDPHYAKAYGRMGLA-Y--TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN-----NSSSASGSGGVFPGLSE  222 (314)
Q Consensus       151 ~~~p~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~  222 (314)
                         |.++.+++++|.+ +  ...+++++|+.+|+++.+.  +++.+++++|.++. .|     ++++|.      ..+..
T Consensus       245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~------~~~~~  312 (452)
T 3e4b_A          245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAE------AHFEK  312 (452)
T ss_dssp             ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHH------HHHHT
T ss_pred             ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHH------HHHHH
Confidence               8889999999988 4  4678899999999998854  47888888988887 55     666665      44433


Q ss_pred             HHHhccCChHHHHHHHHhhcC
Q psy4130         223 MSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       223 ~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++   +.++.....++.++..
T Consensus       313 Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          313 AV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             TT---TTCHHHHHHHHHHHHT
T ss_pred             Hh---CCCHHHHHHHHHHHHC
Confidence            33   5666666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.44  E-value=6.6e-13  Score=105.89  Aligned_cols=133  Identities=11%  Similarity=0.021  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID------CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI---DPH----  155 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----  155 (314)
                      +..+..+|.++...|++++|+..|++++.      ..|....++.++|.++...|++++|+..+++++.+   .++    
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            56899999999999999999999999999      34455678999999999999999999999999998   442    


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP--ND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      ...++..+|.++...|++++|+..+++++.+.+  .+    ..++.+++.++...|++++|.      ..+.+.....
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~  177 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ------QHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH------HHHHHHHHHH
Confidence            356799999999999999999999999997643  22    235689999999999999997      6666555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.44  E-value=3.1e-13  Score=115.83  Aligned_cols=167  Identities=16%  Similarity=0.091  Sum_probs=134.6

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      .|++++|.++++++.+..+   ....                       . .......-...+...|.++...|+|++|+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~---~~~~-----------------------~-~~~~~~~A~~~~~~a~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK---TSFM-----------------------K-WKPDYDSAASEYAKAAVAFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---CCSS-----------------------S-CSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc---cccc-----------------------C-CCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6789999999999887666   2200                       0 01122333456777789999999999999


Q ss_pred             HHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHH
Q psy4130         110 IEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       110 ~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      .+|.+++.+.+..      ..++.++|.+|..+|++++|+.+|++++.+.+.      ...++.++|.++.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            9999999986532      468899999999999999999999999998543      24788999999999 9999999


Q ss_pred             HHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130         178 EAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD  230 (314)
Q Consensus       178 ~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  230 (314)
                      .+|++++.+.|..      ..++.+++.++..+|++++|+      ..+..++...+.+
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~~~~  188 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA------ASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHc
Confidence            9999999998754      568999999999999999998      7777777665443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.44  E-value=1.8e-12  Score=119.40  Aligned_cols=157  Identities=12%  Similarity=-0.000  Sum_probs=140.4

Q ss_pred             hhhHHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQ-------QDKPE-------QAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDCQ  147 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  147 (314)
                      ...|.++..|..+|..+..       .|+++       +|+..|+++++ .+|++..+|..+|.++...|++++|...|+
T Consensus       266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3456778899999999986       79987       99999999997 899999999999999999999999999999


Q ss_pred             HHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcccccCCCCCCCcchHHHHHH
Q psy4130         148 IAIKIDPHYA-KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA-MSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       148 ~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                      ++++++|.++ .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|+.++|.      ..+..+++
T Consensus       346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~------~~~e~al~  419 (530)
T 2ooe_A          346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF------KIFELGLK  419 (530)
T ss_dssp             HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH------HHHHHHHH
T ss_pred             HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH------HHHHHHHH
Confidence            9999999985 6999999999999999999999999999999887777766665 34689999998      88889999


Q ss_pred             hccCChHHHHHHHHhhcCCC
Q psy4130         226 KVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       226 ~~~~~p~~~~~l~~~~~~~~  245 (314)
                      ..|.++.+|..+..+....+
T Consensus       420 ~~p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          420 KYGDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             HHTTCHHHHHHHHHHHTTTT
T ss_pred             HCCCCHHHHHHHHHHHHhCC
Confidence            99999999999998876643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.44  E-value=1.8e-12  Score=89.40  Aligned_cols=82  Identities=30%  Similarity=0.408  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      .+..++.+|.++...|++++|+..|++++..+|.++.++.++|.++...|++++|+.++++++.++|.++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             HH
Q psy4130         168 TQ  169 (314)
Q Consensus       168 ~~  169 (314)
                      ..
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.44  E-value=2.3e-12  Score=88.86  Aligned_cols=85  Identities=32%  Similarity=0.454  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130         121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA  200 (314)
Q Consensus       121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  200 (314)
                      .++.+++.+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy4130         201 MSNLN  205 (314)
Q Consensus       201 ~~~~~  205 (314)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            88764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.43  E-value=5.3e-13  Score=117.38  Aligned_cols=135  Identities=19%  Similarity=0.124  Sum_probs=114.5

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .|......+++++|+.+|++++++.|   ..+.           ......        .....+..+..|.++|.+++..
T Consensus       229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~~~-----------~~~~~~--------~~~~~~~~~~~~~nla~~~~~~  286 (370)
T 1ihg_A          229 IGNTFFKSQNWEMAIKKYTKVLRYVE---GSRA-----------AAEDAD--------GAKLQPVALSCVLNIGACKLKM  286 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH---HHHH-----------HSCHHH--------HGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhh---cCcc-----------ccChHH--------HHHHHHHHHHHHHHHHHHHHhc
Confidence            34455678999999999999998766   2110           000001        1235678889999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      ++|++|+.+|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++++++...
T Consensus       287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998887653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.43  E-value=2.7e-11  Score=102.83  Aligned_cols=155  Identities=9%  Similarity=0.013  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--  156 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  156 (314)
                      .+.....+...+..+...|+|++|+..|++++...+...      ..++.+|.++...|++++|+.++++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            345566778899999999999999999999999887654      346778999999999999999999999876543  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130         157 ----AKAYGRMGLAYTQMNDYKAALEAYTKAA---ELDPNDP----LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST  225 (314)
Q Consensus       157 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  225 (314)
                          ..++..+|.++...|++++|+.+|++++   +..|++.    .++.++|.++..+|++++|.      ..+..+..
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al------~~~~kal~  224 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL------YQVNKAIE  224 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH------HHHHHHHH
Confidence                5789999999999999999999999999   5566643    68999999999999999997      66666655


Q ss_pred             hccC--C----hHHHHHHHHhhcCCC
Q psy4130         226 KVLS--D----PSIQQVFGELFANPG  245 (314)
Q Consensus       226 ~~~~--~----p~~~~~l~~~~~~~~  245 (314)
                      ....  +    ..+...++.++...+
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~y~~~g  250 (293)
T 2qfc_A          225 ISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence            4322  1    355666676666543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.43  E-value=5.1e-12  Score=115.25  Aligned_cols=191  Identities=17%  Similarity=0.132  Sum_probs=151.4

Q ss_pred             hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHh----c-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh---
Q psy4130          30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY----Y-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ---  101 (314)
Q Consensus        30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---  101 (314)
                      .+++++|+++|+++++..+   ......++.+|...    . ...+..+......      ..++.+++.+|.++..   
T Consensus       200 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~y~~g~~  270 (490)
T 2xm6_A          200 ERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE------QGNSIAQFRLGYILEQGLA  270 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHTTT
T ss_pred             CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHCCCC
Confidence            5788888888888877655   45566666666641    1 2233333222111      1346788999999998   


Q ss_pred             -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---C
Q psy4130         102 -QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-----KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---D  172 (314)
Q Consensus       102 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~  172 (314)
                       .+++++|+.+|+++++.  .++.+++.+|.+|...     +++++|+.+|+++++.  .++.+++.+|.++...|   +
T Consensus       271 ~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          271 GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCccc
Confidence             89999999999999865  6788999999999998     9999999999999986  56789999999999866   8


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +++|+.+|+++++.  .++.++++++.++..    .+++++|.      ..+..++..  .+|..+..++.++..
T Consensus       347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~------~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA------IWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH------HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH------HHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            99999999999987  679999999999999    88999997      777666653  578889899988765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.41  E-value=3.4e-11  Score=103.73  Aligned_cols=181  Identities=12%  Similarity=-0.038  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ..++...++..+..+....+..++|+..++++|.++|.+..+|+.++.++..++ .+++++..+.+++..+|++..+|..
T Consensus        49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h  128 (349)
T 3q7a_A           49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH  128 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            445566667776667777777789999999999999999999999999999999 5999999999999999999999999


Q ss_pred             HHHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc--------cCCCCCCCcchHHHHHHhccCChH
Q psy4130         163 MGLAYTQM-N-DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS--------SASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       163 lg~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      ++.++... + ++++++..+.++++.+|+|..+|...+.+....+.++        ++.      ......+..-+.|..
T Consensus       129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL------e~~~k~I~~dp~N~S  202 (349)
T 3q7a_A          129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL------DWCNEMLRVDGRNNS  202 (349)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH------HHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHH------HHHHHHHHhCCCCHH
Confidence            99999998 8 9999999999999999999999999999999999988        565      666777888888999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhChH
Q psy4130         233 IQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPE  278 (314)
Q Consensus       233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~  278 (314)
                      .|...+.++...+...    .    ...+.+..-....+....+|+
T Consensus       203 AW~~R~~lL~~l~~~~----~----~~~~~~eELe~~~~aI~~~P~  240 (349)
T 3q7a_A          203 AWGWRWYLRVSRPGAE----T----SSRSLQDELIYILKSIHLIPH  240 (349)
T ss_dssp             HHHHHHHHHTTSTTCC----C----CHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhccccc----c----chHHHHHHHHHHHHHHHhCCC
Confidence            9999999988764211    1    123334444455555666775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=2.6e-11  Score=112.32  Aligned_cols=145  Identities=11%  Similarity=0.055  Sum_probs=129.2

Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          95 LGNTAMQQDKP-EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN----------YKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        95 ~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ........+++ ++|+..+++++..+|++..+|+.++.++...++          +++++.+++++++.+|++..+|+.+
T Consensus        34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR  113 (567)
T 1dce_A           34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR  113 (567)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            33344556655 577999999999999999999999999999998          9999999999999999999999999


Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         164 GLAYTQMN--DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN-NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       164 g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +.++...+  +++++++.+.++++++|.+..+|...+.+....| .++++.      ..+..+++..+.|...|...+.+
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el------~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL------AFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH------HHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHH------HHHHHHHHHCCCCccHHHHHHHH
Confidence            99999999  7799999999999999999999999999999999 777776      66667777778888999999988


Q ss_pred             hcCCC
Q psy4130         241 FANPG  245 (314)
Q Consensus       241 ~~~~~  245 (314)
                      +....
T Consensus       188 l~~l~  192 (567)
T 1dce_A          188 LPQLH  192 (567)
T ss_dssp             HHHHS
T ss_pred             HHhhc
Confidence            76643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=2.8e-12  Score=108.46  Aligned_cols=105  Identities=17%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130         120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA  199 (314)
Q Consensus       120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  199 (314)
                      |.++..+..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130         200 AMSNLNNSSSASGSGGVFPGLSEMSTKVLSD  230 (314)
Q Consensus       200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  230 (314)
                      ++..+|++++|.      ..+..+....+.+
T Consensus        81 ~~~~~g~~~~A~------~~~~~al~l~p~~  105 (281)
T 2c2l_A           81 CQLEMESYDEAI------ANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHTTCHHHHH------HHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHH------HHHHHHHHhCccc
Confidence            999999999998      7777777666654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.38  E-value=2e-12  Score=109.88  Aligned_cols=127  Identities=14%  Similarity=0.070  Sum_probs=105.7

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...+++++|+.+|++++.+.+.. .+.                               .....++..+|.++...|++++
T Consensus       126 ~~~~~~~~Ai~~~~~al~~~~~~-~~~-------------------------------~~~~~~~~~lg~~y~~~g~~~~  173 (293)
T 3u3w_A          126 LKKVDYEYCILELKKLLNQQLTG-IDV-------------------------------YQNLYIENAIANIYAENGYLKK  173 (293)
T ss_dssp             TTSSCHHHHHHHHHHHHHTCCCC-SCT-------------------------------THHHHHHHHHHHHHHHTTCHHH
T ss_pred             HcccCHHHHHHHHHHHHHHhccc-ccH-------------------------------HHHHHHHHHHHHHHHHcCCHHH
Confidence            44678899999999999876622 110                               1235579999999999999999


Q ss_pred             HHHHHHHHHHc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcC-CH
Q psy4130         108 AVIEYSKAIDC-------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMGLAYTQMN-DY  173 (314)
Q Consensus       108 A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g-~~  173 (314)
                      |+.+|+++++.       .+....+++++|.+|..+|+|++|+.++++++.+.+..      +.+++++|.++..+| .+
T Consensus       174 A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  253 (293)
T 3u3w_A          174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE  253 (293)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcH
Confidence            99999999953       12234588999999999999999999999999986543      789999999999999 57


Q ss_pred             HHHHHHHHHHHhh
Q psy4130         174 KAALEAYTKAAEL  186 (314)
Q Consensus       174 ~~A~~~~~~al~~  186 (314)
                      ++|+.+|++++.+
T Consensus       254 ~~A~~~~~~Al~i  266 (293)
T 3u3w_A          254 AEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999975

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.38  E-value=1.6e-11  Score=102.53  Aligned_cols=131  Identities=11%  Similarity=-0.055  Sum_probs=110.2

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..|++++|++.|+.++...|                                      .+. .++.+|.++++.++|++|
T Consensus       114 ~~g~y~eA~~~l~~~~~~~p--------------------------------------~~~-~~~~~a~l~~~~~r~~dA  154 (282)
T 4f3v_A          114 AQGNYADAMEALEAAPVAGS--------------------------------------EHL-VAWMKAVVYGAAERWTDV  154 (282)
T ss_dssp             HHTCHHHHHHHHTSSCCTTC--------------------------------------HHH-HHHHHHHHHHHTTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCC--------------------------------------chH-HHHHHHHHHHHcCCHHHH
Confidence            36788888888877776666                                      234 688899999999999999


Q ss_pred             HHHHHHHHHcC-CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         109 VIEYSKAIDCD-NSN-PVYYCNRAASNNKLKNYKLALRDCQIAIKID--PH-YAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       109 ~~~~~~al~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      +..|++++... |.. ..+++++|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|+++
T Consensus       155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999887653 211 3589999999999999999999999999654  55 6789999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHH
Q psy4130         184 AELDPNDPLYANNMQA  199 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~  199 (314)
                      +..+|+ ..++..|..
T Consensus       235 ~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          235 QTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHSCC-HHHHHHHHC
T ss_pred             HhcCCc-HHHHHHHhC
Confidence            999999 877766643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=4.1e-12  Score=111.41  Aligned_cols=151  Identities=7%  Similarity=-0.106  Sum_probs=110.3

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...|++++|+..+++++...|   ....                              .....++..+|.++...|++++
T Consensus        25 ~~~g~~~~A~~~~~~al~~~~---~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~   71 (373)
T 1hz4_A           25 INDGNPDEAERLAKLALEELP---PGWF------------------------------YSRIVATSVLGEVLHCKGELTR   71 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCC---TTCH------------------------------HHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcCC---CCch------------------------------hHHHHHHHHHHHHHHhcCcHHH
Confidence            358899999999999998887   2211                              1123467777788888888888


Q ss_pred             HHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCH
Q psy4130         108 AVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKID--------PHYAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus       108 A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~  173 (314)
                      |+..+++++.+.|...      .++.++|.++...|++++|+..+++++.+.        |....++..+|.++...|++
T Consensus        72 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  151 (373)
T 1hz4_A           72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL  151 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence            8888888877654322      235677888888888888888888887764        33456677788888888888


Q ss_pred             HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcccccCC
Q psy4130         174 KAALEAYTKAAELDPND-----PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++|+..+++++.+.|..     ..++..++.++...|++++|.
T Consensus       152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  194 (373)
T 1hz4_A          152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR  194 (373)
T ss_dssp             HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888776642     356777888888888888775

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.38  E-value=4.6e-12  Score=114.50  Aligned_cols=187  Identities=14%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc---h-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc----C
Q psy4130          32 GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY---K-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ----D  103 (314)
Q Consensus        32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~  103 (314)
                      ..+.+..+++.+...+|   . ..+.++.+|...+   + ..+..+.    .+.....+..+..++.+|.+|...    +
T Consensus       160 ~~~~a~~~~~~a~~~~~---~-a~~~Lg~~~~~~g~~~~~~~A~~~~----~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~  231 (452)
T 3e4b_A          160 HLDDVERICKAALNTTD---I-CYVELATVYQKKQQPEQQAELLKQM----EAGVSRGTVTAQRVDSVARVLGDATLGTP  231 (452)
T ss_dssp             GHHHHHHHHHHHTTTCT---T-HHHHHHHHHHHTTCHHHHHHHHHHH----HHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred             CHHHHHHHHHHHHcCCH---H-HHHHHHHHHHHcCCcccHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence            55666777777777777   4 5667777666644   2 1222222    112223344455567888888654    6


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----CHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAAS-N--NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-----DYKA  175 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~  175 (314)
                      ++++|+.+|+++.   |.++.+++++|.+ +  ...+++++|+.+|++++..  .++.++++||.+|. .|     ++++
T Consensus       232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~  305 (452)
T 3e4b_A          232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKA  305 (452)
T ss_dssp             CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred             CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence            8888888888887   7888888888888 4  4678888888888888865  47888888888887 55     8888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         176 ALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       176 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      |+.+|+++.   |.++.++++||.++..    ..++++|.      ..+...+.  ..+++....++.++..
T Consensus       306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~------~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKAL------DHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHH------HHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHH------HHHHHHHh--hChHHHHHHHHHHHHh
Confidence            888888887   7888888888888776    23556665      45544443  4567777777777665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.37  E-value=6.4e-12  Score=88.85  Aligned_cols=91  Identities=20%  Similarity=0.270  Sum_probs=72.2

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q psy4130         118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYAN  195 (314)
Q Consensus       118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~  195 (314)
                      .+|+++.+++++|.+|...|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            468888888899999999999999999999999999988888999999999999999999999988888763  455666


Q ss_pred             HHHHHHHHhcccc
Q psy4130         196 NMQAAMSNLNNSS  208 (314)
Q Consensus       196 ~l~~~~~~~~~~~  208 (314)
                      .+..++...+...
T Consensus        82 ~l~~~l~~~~~~~   94 (100)
T 3ma5_A           82 ELQDAKLKAEGLE   94 (100)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHccccc
Confidence            6666666655443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.36  E-value=2.3e-12  Score=98.32  Aligned_cols=131  Identities=19%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ....|++++|+.+|++++++.+.. .                               .......++..+|.++...|+++
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~-~-------------------------------~~~~~~~~~~~l~~~~~~~g~~~   66 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEF-G-------------------------------DKAAERIAYSNLGNAYIFLGEFE   66 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHH-T-------------------------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHh-C-------------------------------CchHHHHHHHHHHHHHHHcCCHH
Confidence            345789999999999999877611 0                               11233568999999999999999


Q ss_pred             HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHH
Q psy4130         107 QAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYK  174 (314)
Q Consensus       107 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~  174 (314)
                      +|+.+|++++...+..      ..++.++|.++...|++++|+..+++++.+.+.      ...++..+|.++...|+++
T Consensus        67 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A           67 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence            9999999999876543      568899999999999999999999999987432      3578899999999999999


Q ss_pred             HHHHHHHHHHhhCCC
Q psy4130         175 AALEAYTKAAELDPN  189 (314)
Q Consensus       175 ~A~~~~~~al~~~p~  189 (314)
                      +|+..+++++++...
T Consensus       147 ~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          147 QAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.35  E-value=1.9e-12  Score=91.15  Aligned_cols=92  Identities=17%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV-YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      .+..|..+...|++++|+..|+++++.+|.++. +++++|.++...|++++|+.+|+++++++|++..++.+        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            356788888899999999999999999999888 89999999999999999999999999999988887754        


Q ss_pred             CCHHHHHHHHHHHHhhCCCCH
Q psy4130         171 NDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~  191 (314)
                      +.+.+++..|++++..+|+++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            567778888888887777653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.29  E-value=4e-11  Score=105.09  Aligned_cols=196  Identities=9%  Similarity=-0.044  Sum_probs=138.2

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCc-----hhhHHHHHHHhchh-hhhhhhccCCC---C-CChhhHHHHHHHHHH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPAS-----NVDIESLFQLYYKD-EVLQWYSNINF---S-PTEEVKIEAEKYKNL   95 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~-----~~~l~~~~~~~~~~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~   95 (314)
                      .....|++++|+..+++++.+.|......     ...++.++...++. ++.........   . .....+.....+..+
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  141 (373)
T 1hz4_A           62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR  141 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence            34568999999999999998877442211     12344455544432 22222111110   0 001114566788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHH-----HH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNS-----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYG-----RM  163 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-----~l  163 (314)
                      |.++...|++++|+.++++++...+.     ...++.++|.++...|++++|+..+++++.+.+.  ....+.     .+
T Consensus       142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  221 (373)
T 1hz4_A          142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR  221 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence            99999999999999999999998765     2467889999999999999999999999987432  211121     34


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         164 GLAYTQMNDYKAALEAYTKAAELDPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       164 g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      +.++...|++++|...+++++...|..    ...+..++.++...|++++|.      ..+.......
T Consensus       222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~l~~a~~~~  283 (373)
T 1hz4_A          222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE------IVLEELNENA  283 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHH
Confidence            456889999999999999999877653    336788999999999999997      6665555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.28  E-value=5.4e-11  Score=86.07  Aligned_cols=98  Identities=11%  Similarity=0.033  Sum_probs=83.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4130          35 VAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSK  114 (314)
Q Consensus        35 ~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  114 (314)
                      .|++.|+++++.+|   .+                                   +..++.+|.++...|++++|+..|++
T Consensus         3 ~a~~~~~~al~~~p---~~-----------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~   44 (115)
T 2kat_A            3 AITERLEAMLAQGT---DN-----------------------------------MLLRFTLGKTYAEHEQFDAALPHLRA   44 (115)
T ss_dssp             CHHHHHHHHHTTTC---CC-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC---Cc-----------------------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            57888899999888   33                                   34789999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHc
Q psy4130         115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLAYTQM  170 (314)
Q Consensus       115 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~  170 (314)
                      ++..+|.++.+|+++|.++...|++++|+..|++++.++|.  +......+...+..+
T Consensus        45 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           45 ALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999875  344444454444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.26  E-value=2.6e-11  Score=85.64  Aligned_cols=85  Identities=12%  Similarity=0.117  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGR  162 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  162 (314)
                      +|.++.+++.+|.+++..|++++|+..|+++++++|.++.+|+++|.+|...|++++|+..|++++++.|.  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999998764  3344444


Q ss_pred             HHHHHHH
Q psy4130         163 MGLAYTQ  169 (314)
Q Consensus       163 lg~~~~~  169 (314)
                      +..++..
T Consensus        83 l~~~l~~   89 (100)
T 3ma5_A           83 LQDAKLK   89 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.23  E-value=3.1e-10  Score=85.15  Aligned_cols=122  Identities=15%  Similarity=0.086  Sum_probs=104.4

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..+++++|+++|+++.+..+   ..                                     +.  +|.++...+.+++|
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~---~~-------------------------------------a~--lg~~y~~g~~~~~A   44 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNE---MF-------------------------------------GC--LSLVSNSQINKQKL   44 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC---TT-------------------------------------HH--HHHHTCTTSCHHHH
T ss_pred             CccCHHHHHHHHHHHHcCCC---Hh-------------------------------------hh--HHHHHHcCCCHHHH
Confidence            46789999999999987654   11                                     22  78888888888889


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALEAY  180 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~  180 (314)
                      +.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.+|
T Consensus        45 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           45 FQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF  120 (138)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence            9999999987  689999999999999    89999999999999987  689999999999999    99999999999


Q ss_pred             HHHHhhCCCCHHHHHHHH
Q psy4130         181 TKAAELDPNDPLYANNMQ  198 (314)
Q Consensus       181 ~~al~~~p~~~~~~~~l~  198 (314)
                      +++.+..  ++.+..+|+
T Consensus       121 ~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          121 EKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHTT--CHHHHHHC-
T ss_pred             HHHHHCC--CHHHHHHHh
Confidence            9999874  556665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.17  E-value=1.1e-10  Score=105.79  Aligned_cols=137  Identities=13%  Similarity=0.056  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc--
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHY--  156 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~--  156 (314)
                      ....+..+..+|+|++|+..|+++++.     .|++   ...+.++|.+|..+|+|++|+..+++++.+     .|++  
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            445556678899999999999999985     3444   467899999999999999999999999987     3444  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         157 -AKAYGRMGLAYTQMNDYKAALEAYTKAAEL-----DPNDP---LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       157 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                       ...+.+||.+|..+|++++|+..|++|+++     .|+++   .....++.++..++.+.+|.      ..+..+....
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae------~~~~~~~~~~  465 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE------FMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence             478999999999999999999999999975     56654   45678999999999999996      6665655555


Q ss_pred             cCChHHH
Q psy4130         228 LSDPSIQ  234 (314)
Q Consensus       228 ~~~p~~~  234 (314)
                      ..+-.+|
T Consensus       466 ~~~~~~~  472 (490)
T 3n71_A          466 LNNQPMQ  472 (490)
T ss_dssp             HTC----
T ss_pred             hcCCCCc
Confidence            5555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=1.5e-09  Score=91.89  Aligned_cols=185  Identities=9%  Similarity=-0.060  Sum_probs=133.5

Q ss_pred             HHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhh--HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy4130          36 AVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEV--KIEAEKYKNLGNTAMQQDKPEQAVIEY  112 (314)
Q Consensus        36 Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~  112 (314)
                      |+..|++.++..+.. ....+.++.++...++. ++..+....    +...  ....+.+...+.++...|+.+.|.+.+
T Consensus        85 a~~~l~~l~~~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 NIEELENLLKDKQNS-PYELYLLATAQAILGDLDKSLETCVEG----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             CCHHHHHTTTTSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHH----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHH----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            688888888775422 22334556666665543 344442211    1111  367788999999999999999999999


Q ss_pred             HHHHHcCCC----CHHHHHHH--HHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         113 SKAIDCDNS----NPVYYCNR--AASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       113 ~~al~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      ++..+.+|+    +-.+...+  |.+....|  ++.+|...|+++....|+.......+. ++..+|++++|...++.++
T Consensus       160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence            999999883    12233444  54566666  999999999999888887333233333 8999999999999999888


Q ss_pred             hh----------CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         185 EL----------DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       185 ~~----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      +.          +|+++.++.++..+...+|+  +|.      ..+.++.+..|.+|-+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~------~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE------DLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH------HHHHHHHHTTCCCHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH------HHHHHHHHhCCCChHHH
Confidence            77          58899999999999999997  665      66667777778888654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.16  E-value=1.8e-10  Score=91.59  Aligned_cols=123  Identities=11%  Similarity=0.064  Sum_probs=99.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcCC
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK------IDPHYAKAYGRMGLAYTQMND  172 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~  172 (314)
                      ++..|++++|...++......+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45689999999966555443336778999999999999999999999999999      445567899999999999999


Q ss_pred             HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130         173 YKAALEAYTKAAEL---DPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       173 ~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      +++|+..+++++.+   .+++    ..++.+++.++...|++++|.      ..+.+.....
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~  137 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR------QEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHHH
Confidence            99999999999998   4433    457899999999999999997      6666665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.15  E-value=1.3e-09  Score=107.33  Aligned_cols=158  Identities=18%  Similarity=0.167  Sum_probs=104.1

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      |......|.+++|..+|+++-  .+   ..   .+..++...+.. .+....         .....+.+|+.+|.++...
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~--~~---~~---A~~VLie~i~nldrAiE~A---------ervn~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFD--VN---TS---AVQVLIEHIGNLDRAYEFA---------ERCNEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcC--CH---HH---HHHHHHHHHhhHHHHHHHH---------HhcCCHHHHHHHHHHHHhC
Confidence            344556888899999999972  11   11   122233222221 122211         1123467888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------------
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---------------------------  155 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------------------  155 (314)
                      |++++|+..|.++     +++..|...|.++.+.|+|++|+++|..|.+..+.                           
T Consensus      1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~ 1193 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 1193 (1630)
T ss_pred             CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCC
Confidence            8888888888775     77888888888888888888888888877765533                           


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +...+..+|..+...|+|++|+.+|.++        ..|..++.++.++|++++|+
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHH
Confidence            1234556777777777777777777764        35666666666666666665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.15  E-value=4.6e-10  Score=78.63  Aligned_cols=78  Identities=23%  Similarity=0.332  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHH
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK-AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA--NNMQAAMS  202 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~  202 (314)
                      .+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++  ..+..++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999887  44444444


Q ss_pred             H
Q psy4130         203 N  203 (314)
Q Consensus       203 ~  203 (314)
                      .
T Consensus        83 ~   83 (99)
T 2kc7_A           83 F   83 (99)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.14  E-value=4.1e-10  Score=100.48  Aligned_cols=162  Identities=9%  Similarity=-0.026  Sum_probs=125.1

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..|++++|++.|.++++..|...+...                     ..............++..+|.+|...|++++|
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a   74 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAA---------------------GASVDDKRRNEQETSILELGQLYVTMGAKDKL   74 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSS---------------------SSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHH---------------------HHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHH
Confidence            478999999999999999995533211                     00111233344566788999999999999999


Q ss_pred             HHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHH
Q psy4130         109 VIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDP------HYAKAYGRMGLAYTQMNDYKAA  176 (314)
Q Consensus       109 ~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A  176 (314)
                      ++.|++++...+...      .+...++.++...|++++|+..+++++...+      .....+..+|.++...|++++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence            999999988755432      3456678888888999999999999887642      3467888999999999999999


Q ss_pred             HHHHHHHHhhC------CCCHHHHHHHHHHHHHhcccccCC
Q psy4130         177 LEAYTKAAELD------PNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       177 ~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +..+++++...      |....++..++.++..+|++++|.
T Consensus       155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  195 (434)
T 4b4t_Q          155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSK  195 (434)
T ss_dssp             HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHH
Confidence            99999888752      233568899999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.11  E-value=2.5e-10  Score=103.48  Aligned_cols=131  Identities=11%  Similarity=0.000  Sum_probs=109.8

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ...+|++++|+..|++++++.-   .                           ......|..+..+.++|.+|..+|+|+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~---~---------------------------~lg~~Hp~~a~~~~nLa~~y~~~g~~~  368 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQE---P---------------------------VFADTNLYVLRLLSIASEVLSYLQAYE  368 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHT---T---------------------------TBCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHH---H---------------------------hcCCCCHHHHHHHHHHHHHHHHhcCHH
Confidence            3468999999999999987654   1                           114456778889999999999999999


Q ss_pred             HHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHc
Q psy4130         107 QAVIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYA---KAYGRMGLAYTQM  170 (314)
Q Consensus       107 ~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~  170 (314)
                      +|+.+|++++..     .|++   ...+.++|.+|..+|++++|+..|++|+.+     .|+++   .....++.++..+
T Consensus       369 eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  448 (490)
T 3n71_A          369 EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL  448 (490)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            999999999975     3444   457899999999999999999999999976     46665   5667899999999


Q ss_pred             CCHHHHHHHHHHHHhhC
Q psy4130         171 NDYKAALEAYTKAAELD  187 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~  187 (314)
                      +.+++|...|.++.+..
T Consensus       449 ~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          449 RMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.11  E-value=9.3e-10  Score=93.06  Aligned_cols=139  Identities=12%  Similarity=-0.013  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGR  162 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~  162 (314)
                      ...+..+|.++...|++++|+..+.+++..+|  .+.+++..++.++.++|+.+.|.+.+++..+.+|+    +......
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            34567999999999999999999999999987  88999999999999999999999999999999993    2333444


Q ss_pred             H--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh----------
Q psy4130         163 M--GLAYTQMN--DYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK----------  226 (314)
Q Consensus       163 l--g~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------  226 (314)
                      +  |.+....|  ++.+|...|+++....|+  .+..+.+   ++..+|++++|.      ..+..+.+.          
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe------~~L~~l~~~~p~~~~k~~~  250 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQ------GIVELLLSDYYSVEQKENA  250 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHH------HHHHHHHSHHHHTTTCHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHH------HHHHHHHHhcccccccccC
Confidence            4  44466666  999999999999988887  3334444   899999999995      444433333          


Q ss_pred             ccCChHHHHH
Q psy4130         227 VLSDPSIQQV  236 (314)
Q Consensus       227 ~~~~p~~~~~  236 (314)
                      -+.||+....
T Consensus       251 ~p~~~~~LaN  260 (310)
T 3mv2_B          251 VLYKPTFLAN  260 (310)
T ss_dssp             HSSHHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            2667776533

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=1.6e-09  Score=81.27  Aligned_cols=101  Identities=6%  Similarity=-0.019  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130         105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKID-P-HYAKAYGRMGLAYTQMNDYKAALEA  179 (314)
Q Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~  179 (314)
                      ...+.+.|.+.+..++.+..+.+++|+++.+.+   +..+++..++..++.+ | ++.+++|++|..++++|+|++|+.+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456778888888889999999999999999988   7779999999999999 7 5689999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         180 YTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       180 ~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      ++++++++|++..+......+..+..
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999888877766653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.07  E-value=5.6e-09  Score=102.93  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=109.9

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...|++++|+++|..+.+..++.  .....++..|.+....+....+.        ..+ +...+..+|..++..|+|++
T Consensus      1145 ~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI--------~~~-n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A         1145 NTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI--------NGP-NNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred             HHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH--------hCC-CHHHHHHHHHHHHhcCCHHH
Confidence            34556666666666666555411  12223444444433222222110        111 23457789999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------------CcHHHHHH
Q psy4130         108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP-------------------------HYAKAYGR  162 (314)
Q Consensus       108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------~~~~~~~~  162 (314)
                      |+.+|.++        ..|..+|.+|.++|++++|++++++|....+                         .+++.+..
T Consensus      1214 A~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLee 1285 (1630)
T 1xi4_A         1214 AKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE 1285 (1630)
T ss_pred             HHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHH
Confidence            99999986        4789999999999999999999999855433                         13445557


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      ++..|...|.|++|+..+++++.++|.+...+..++.++.+
T Consensus      1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1286 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence            77788889999999999999999999888888888877765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.05  E-value=3.2e-10  Score=100.16  Aligned_cols=184  Identities=10%  Similarity=0.073  Sum_probs=88.7

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+.+++.+.+..++  ......+..+|...++......   ....     | +...|..+|..++..|.|
T Consensus        70 ~ae~~g~~EeAi~yl~~ark~~~~--~~i~~~Li~~Y~Klg~l~e~e~---f~~~-----p-n~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           70 AANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEE---FING-----P-NNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             -----------------------------------------CHHHHTT---TTTC-----C-----------------CT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHhCCHHHHHH---HHcC-----C-cHHHHHHHHHHHHHcCCH
Confidence            445577888888888887775441  1112233334554443322221   1111     1 224899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE  185 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  185 (314)
                      ++|+.+|.++        ..|..+|.|+.++|+|++|++.++++     .++..|...+.++...|+|+.|..+... +.
T Consensus       139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~  204 (449)
T 1b89_A          139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV  204 (449)
T ss_dssp             TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT
T ss_pred             HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH
Confidence            9999999976        46889999999999999999999999     4678888888888888888888666654 33


Q ss_pred             hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      .+|+   -...+..+|.+.|++++|+      ..+......-.....++..++.++..
T Consensus       205 ~~ad---~l~~lv~~Yek~G~~eEai------~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          205 VHAD---ELEELINYYQDRGYFEELI------TMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             TCHH---HHHHHHHHHHHTTCHHHHH------HHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             hCHh---hHHHHHHHHHHCCCHHHHH------HHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            4443   3445777788888888776      44444444444455666666666555

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=2.5e-09  Score=80.17  Aligned_cols=118  Identities=16%  Similarity=0.117  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALE  178 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~  178 (314)
                      +++++|+.+|+++.+.....  +.  +|.+|...+.+++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            47899999999999987444  34  999999999999999999999987  789999999999999    899999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130         179 AYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV  236 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~  236 (314)
                      +|+++.+.  .++.+.++|+.++..    .+++++|.      ..+..++..  .++.....
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~------~~~~~Aa~~--g~~~A~~~  134 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV------KTFEKACRL--GSEDACGI  134 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH------HHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHH------HHHHHHHHC--CCHHHHHH
Confidence            99999987  689999999999999    78888886      555555443  45544433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.01  E-value=2.8e-09  Score=73.89  Aligned_cols=72  Identities=8%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         119 DNSNPVYYCNRAASNNKLKN---YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       119 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                      +|+++.++..+|.+++..++   .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68888889999998876665   6889999999999999999999999999999999999999999999988874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.97  E-value=6.5e-09  Score=89.53  Aligned_cols=77  Identities=18%  Similarity=0.169  Sum_probs=68.7

Q ss_pred             HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130         115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL  192 (314)
Q Consensus       115 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  192 (314)
                      ++..+|.++.++..++.++...|++++|+..+++|+.++|. ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            34667899999999999998899999999999999999974 778889999999999999999999999999998653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.95  E-value=9.6e-09  Score=88.46  Aligned_cols=144  Identities=6%  Similarity=-0.066  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH-------HHHHH-HHH--HHHHhCCCc
Q psy4130          90 EKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY-------KLALR-DCQ--IAIKIDPHY  156 (314)
Q Consensus        90 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~~-~~~--~al~~~p~~  156 (314)
                      .-++..|..+...+   ++.+|+.+|+++++++|+++.+|..++.+|.....+       ..++. .++  .++..+|.+
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~  276 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL  276 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence            34666677776654   468999999999999999999999999988643211       11111 222  233567999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV  236 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~  236 (314)
                      +.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|.      +.+..+.+.-|..|. ..+
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~------e~~~~AlrL~P~~~t-~~~  348 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA------DAYLTAFNLRPGANT-LYW  348 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHSCSHHH-HHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH------HHHHHHHhcCCCcCh-HHH
Confidence            999999999999999999999999999999975 678899999999999999998      888888887776664 555


Q ss_pred             HHHhh
Q psy4130         237 FGELF  241 (314)
Q Consensus       237 l~~~~  241 (314)
                      ..++.
T Consensus       349 ~~~l~  353 (372)
T 3ly7_A          349 IENGI  353 (372)
T ss_dssp             HHHSS
T ss_pred             HhCce
Confidence            55553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.92  E-value=1.4e-08  Score=72.07  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      ..++.+|..++..++|..|+.+|++|++..       +..+.++..+|.++.++|+++.|+..++++++++|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            446667777777777777777777776642       2234455556666666666666666666666666655555554


Q ss_pred             HH
Q psy4130         163 MG  164 (314)
Q Consensus       163 lg  164 (314)
                      ++
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.92  E-value=2.4e-08  Score=70.84  Aligned_cols=84  Identities=15%  Similarity=0.028  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKID-------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA  194 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  194 (314)
                      ++.-.+.+|..++..++|..|+.+|++|++..       +..+.++..+|.+++++|+++.|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45567899999999999999999999999973       35678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy4130         195 NNMQAAMSNLN  205 (314)
Q Consensus       195 ~~l~~~~~~~~  205 (314)
                      .++..+.....
T Consensus        84 ~n~~~~~~~~~   94 (104)
T 2v5f_A           84 GNLKYFEYIMA   94 (104)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            99885555443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.86  E-value=1.2e-08  Score=96.03  Aligned_cols=202  Identities=11%  Similarity=-0.018  Sum_probs=146.6

Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCchhhHH--HHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130          32 GIEVAVECLCKAYDIPDNIDPASNVDIE--SLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV  109 (314)
Q Consensus        32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  109 (314)
                      ..+.....|++++...|   ..+.+++.  .+....+....+.  ..++.++....|.....|...+......|+++.|.
T Consensus       324 ~~~Rv~~~Ye~aL~~~p---~~~~lW~~ya~~~~~~~~~~~a~--r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR  398 (679)
T 4e6h_A          324 HKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDSTVI--TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIE  398 (679)
T ss_dssp             HHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHSCCTTHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34566788999999999   44444443  3444443321111  01223333445566677888899999999999999


Q ss_pred             HHHHHHHHc-----------CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Q psy4130         110 IEYSKAIDC-----------DNS-----------NPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHYAKAYGRMGLA  166 (314)
Q Consensus       110 ~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~  166 (314)
                      ..|++++..           .|.           ...+|...+.+..+.++.+.|...|.+|++. .+.....|...+.+
T Consensus       399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l  478 (679)
T 4e6h_A          399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI  478 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            999999875           243           3457888888888889999999999999987 44556777777777


Q ss_pred             HHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC---ChHHHHHHHHhhc
Q psy4130         167 YTQMN-DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS---DPSIQQVFGELFA  242 (314)
Q Consensus       167 ~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~p~~~~~l~~~~~  242 (314)
                      ....+ +++.|...|+++++..|+++..|..++......|+.+.|.      ..+..++...+.   ...+|..+..+..
T Consensus       479 E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR------~lferal~~~~~~~~~~~lw~~~~~fE~  552 (679)
T 4e6h_A          479 EYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK------SLFESSIDKISDSHLLKMIFQKVIFFES  552 (679)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            66665 4899999999999999999999988999888999998887      666666666652   3367777777755


Q ss_pred             CC
Q psy4130         243 NP  244 (314)
Q Consensus       243 ~~  244 (314)
                      ..
T Consensus       553 ~~  554 (679)
T 4e6h_A          553 KV  554 (679)
T ss_dssp             HT
T ss_pred             Hc
Confidence            53

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.83  E-value=1.2e-08  Score=70.66  Aligned_cols=72  Identities=10%  Similarity=0.059  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130          86 KIEAEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA  157 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  157 (314)
                      |.++..+..+|.+++..++   .++|...++++++++|+++.+++.+|..++..|+|++|+..+++++..+|.++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            4567889999999986665   79999999999999999999999999999999999999999999999999843

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.80  E-value=3.4e-08  Score=88.23  Aligned_cols=112  Identities=12%  Similarity=-0.024  Sum_probs=90.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHY---  156 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---  156 (314)
                      ......+..+|+|++|+..|+++++.     .|++   ...+.++|.+|..+|+|++|+.++++++.+     .|++   
T Consensus       291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            33445566789999999999999975     3444   457899999999999999999999999976     3444   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHh
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAEL-----DPNDPL---YANNMQAAMSNL  204 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~  204 (314)
                      ...+++||.+|..+|++++|+..|++|+++     .|+++.   ++.+|+.+...+
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999999976     566654   445666666544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.8e-08  Score=89.80  Aligned_cols=123  Identities=11%  Similarity=0.006  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCc
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI------DPHY  156 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~  156 (314)
                      ......+|.++...|++++|+..+++++...      +....++.++|.+|...|+|.+|+..+.+++..      .|..
T Consensus        95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~  174 (434)
T 4b4t_Q           95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL  174 (434)
T ss_dssp             HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence            4467778888889999999999999998753      234678899999999999999999999999876      3345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C----HHHHHHHHHHHHHhcccccCC
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN---D----PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ..++..+|.++...|++++|...+++++...+.   .    ...+..++.++...+++.+|.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~  236 (434)
T 4b4t_Q          175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF  236 (434)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            689999999999999999999999999987542   2    245667777777888888876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.79  E-value=5.6e-08  Score=86.75  Aligned_cols=99  Identities=17%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---HHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDC-----DNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHY---AKA  159 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~  159 (314)
                      .......|+|++|+..|+++++.     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|++   ...
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            33344578999999999999984     45554   57889999999999999999999999977     3444   478


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAEL-----DPNDPLYA  194 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~  194 (314)
                      +.+||.+|..+|++++|+..|++|+++     .|+++...
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999999999986     56776543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.79  E-value=3e-08  Score=93.29  Aligned_cols=202  Identities=10%  Similarity=-0.020  Sum_probs=151.3

Q ss_pred             hhcHHHHH-HHHHHHcCCCCCCCCCchhhHHH--HHHHhchhhhhh-hhccCCCC------------CC------hhhHH
Q psy4130          30 KEGIEVAV-ECLCKAYDIPDNIDPASNVDIES--LFQLYYKDEVLQ-WYSNINFS------------PT------EEVKI   87 (314)
Q Consensus        30 ~~~~~~Ai-~~~~~al~~~p~~~~~~~~~l~~--~~~~~~~~~~~~-~~~~~~~~------------~~------~~~~~   87 (314)
                      .++.++|+ +.|++++...|   .+..+++..  +....+..+.+. .+......            +.      .....
T Consensus       356 ~~~~~~a~r~il~rAi~~~P---~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~  432 (679)
T 4e6h_A          356 KNTDSTVITKYLKLGQQCIP---NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK  432 (679)
T ss_dssp             HSCCTTHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence            55667887 99999999999   665555433  333333221111 11000000            00      00113


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-DNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      ...+|...+....+.++.+.|...|.+|++. .+....+|...|.+....+ +++.|...|+++++..|+++..|...+.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            4567888888888899999999999999987 4455677777777766665 5999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDP---NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      .....|+.+.|...|++++...|   ....+|..+.......|+.+.+.      .....+.+..|.++.+.......
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~------~v~~R~~~~~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR------TLEKRFFEKFPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH------HHHHHHHHHSTTCCHHHHHHHHT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCcHHHHHHHHh
Confidence            99999999999999999999988   35678888999999999999887      77778888888888876665544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.78  E-value=1.3e-08  Score=89.84  Aligned_cols=151  Identities=13%  Similarity=0.045  Sum_probs=88.1

Q ss_pred             CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ..+...|++++++++++     .|+.  +....++..+...+ ..++...+.            ....|..+|.++.+.|
T Consensus       102 ~~Y~Klg~l~e~e~f~~-----~pn~--~a~~~IGd~~~~~g~yeeA~~~Y~------------~a~n~~~LA~~L~~Lg  162 (449)
T 1b89_A          102 FALAKTNRLAELEEFIN-----GPNN--AHIQQVGDRCYDEKMYDAAKLLYN------------NVSNFGRLASTLVHLG  162 (449)
T ss_dssp             -------CHHHHTTTTT-----CC------------------CTTTHHHHHH------------HTTCHHHHHHHHHTTT
T ss_pred             HHHHHhCCHHHHHHHHc-----CCcH--HHHHHHHHHHHHcCCHHHHHHHHH------------HhhhHHHHHHHHHHhc
Confidence            35666889988887774     2522  23445555444433 333433322            2257999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      +|++|++.|+++     .++.+|...+.++...|+|+.|..+... +..+|++   ...+..+|.+.|++++|+..++++
T Consensus       163 ~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          163 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999998     4677787777777777777777665554 2233333   335666677777777777777777


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q psy4130         184 AELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       184 l~~~p~~~~~~~~l~~~~~~  203 (314)
                      +.+++.+..++..++.++.+
T Consensus       234 L~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          234 LGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             TTSTTCCHHHHHHHHHHHHT
T ss_pred             hCCcHHHHHHHHHHHHHHHh
Confidence            77777666666666666553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.72  E-value=1.4e-07  Score=70.77  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCD-N-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .++.+++|.++.+..   ++++++..++..++.+ | ...+++|++|..+.++|+|++|..+++++++++|++..+...+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            467899999999988   7779999999999998 7 5689999999999999999999999999999999999887665


Q ss_pred             HHH
Q psy4130         164 GLA  166 (314)
Q Consensus       164 g~~  166 (314)
                      -.+
T Consensus       112 ~~i  114 (152)
T 1pc2_A          112 RLI  114 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.68  E-value=1.2e-07  Score=78.63  Aligned_cols=174  Identities=12%  Similarity=0.085  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHcCCCCCCCCCchhhH--HH---HHHHhchhhhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHh------
Q psy4130          34 EVAVECLCKAYDIPDNIDPASNVDI--ES---LFQLYYKDEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQ------  101 (314)
Q Consensus        34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~------  101 (314)
                      --.+..++-.+..+|   .+..+.+  +.   .|...+-...... ... ........+..+..++..|.-|..      
T Consensus        49 P~~Lk~~e~Ll~~~P---~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~-~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~  124 (301)
T 3u64_A           49 PLVLKVYEALHLQNP---AHRGLSLAVGRLYIMYANAFVQTPAQYLPED-EFEAQNEAYSRARKLYLRGARYALSSLETA  124 (301)
T ss_dssp             HHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHHTHHHHHTSCGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHhcCchhhcchh-hHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            344677788889999   5533322  33   3333332221111 000 000111234445555555544422      


Q ss_pred             cCCHHHHHHH-----HHHHHH-cCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCC--cHHHHHH
Q psy4130         102 QDKPEQAVIE-----YSKAID-CDNSNPVYYCNRAASNNK---L--K------NYKLALRDCQIAIKIDPH--YAKAYGR  162 (314)
Q Consensus       102 ~~~~~~A~~~-----~~~al~-~~p~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~al~~~p~--~~~~~~~  162 (314)
                      ...|.+++..     +.+++. .+|+++++++..|.+...   .  +      ....|...++++++++|+  +..+|..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~  204 (301)
T 3u64_A          125 YPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNV  204 (301)
T ss_dssp             STTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             CccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence            2444444432     344443 578888888888777654   1  2      357899999999999999  6779999


Q ss_pred             HHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-hcccccCC
Q psy4130         163 MGLAYTQM-----NDYKAALEAYTKAAELDPND-PLYANNMQAAMSN-LNNSSSAS  211 (314)
Q Consensus       163 lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~  211 (314)
                      +|.+|...     |+.++|.++|+++++++|+. ...++.++..+.. .+++++|.
T Consensus       205 LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~  260 (301)
T 3u64_A          205 LTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD  260 (301)
T ss_dssp             HHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred             HHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence            99999995     99999999999999999975 9999999999988 48898885

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.65  E-value=1.2e-07  Score=78.51  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHh-----cCC------HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQ-----QDK------PEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKL-----KNYKLALRDCQ  147 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~  147 (314)
                      +.+++.++..|.+...     .++      ...|...++++++++|.  +..+|..+|.+|...     |+.++|.++|+
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            4455566655555432     233      57899999999999999  667999999999995     99999999999


Q ss_pred             HHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q psy4130         148 IAIKIDPHY-AKAYGRMGLAYTQ-MNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       148 ~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~  189 (314)
                      +|++++|+. ..+++..|..++. .|++++|...+++++..+|.
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999975 9999999999988 59999999999999999887

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.64  E-value=1.8e-07  Score=83.46  Aligned_cols=111  Identities=7%  Similarity=-0.034  Sum_probs=88.4

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      .+|++++|++.|++++++.-..                              .....+.....+.++|.+|..+|+|++|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~------------------------------lg~~h~~~~~~~~~L~~~y~~~g~~~eA  348 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSER------------------------------LPDINIYQLKVLDCAMDACINLGLLEEA  348 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCC------------------------------CCTTSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCc------------------------------CCccchHHHHHHHHHHHHHHhhccHHHH
Confidence            4678899999999998875511                              1345667788999999999999999999


Q ss_pred             HHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHH
Q psy4130         109 VIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYAK---AYGRMGLAYTQ  169 (314)
Q Consensus       109 ~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~  169 (314)
                      +.++++++..     .|++   ...++++|.+|..+|++++|+..+++|+.+     .|+++.   .+.+|+.+...
T Consensus       349 ~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          349 LFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999975     3444   457899999999999999999999999986     567664   44555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.62  E-value=2e-07  Score=83.15  Aligned_cols=101  Identities=10%  Similarity=-0.096  Sum_probs=83.0

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..|++++|+..|++++++.-   .                           ......|..+..+.++|.+|..+|+|++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~---~---------------------------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA  359 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMS---S---------------------------VFEDSNVYMLHMMYQAMGVCLYMQDWEGA  359 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHT---T---------------------------TBCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhh---C---------------------------ccChhchHHHHHHHHHHHHHHhhcCHHHH
Confidence            45788999999999887644   1                           11445677788999999999999999999


Q ss_pred             HHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcHHH
Q psy4130         109 VIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYAKA  159 (314)
Q Consensus       109 ~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  159 (314)
                      +.+|++++..     .|++   +..+.++|.+|..+|++++|+..|++|+++     .|+++..
T Consensus       360 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          360 LKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999975     3444   457899999999999999999999999986     5676654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.61  E-value=6.7e-07  Score=64.56  Aligned_cols=102  Identities=5%  Similarity=-0.037  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL---ALRDCQIAIKID-P-HYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      .....+...|.+.+..++.+..+.+++|+++.+..+...   ++..++..++.+ | ..-+.+|.||..++++|+|++|+
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            345567777888888888899999999999999887766   999999999887 5 46689999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      .+++..++.+|+|..+......+..+.
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887776665543

>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A

Probab=98.38  E-value=4.1e-07  Score=60.21  Aligned_cols=52  Identities=17%  Similarity=0.480  Sum_probs=48.6

Q ss_pred             CCCchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCch
Q psy4130           1 MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASN   55 (314)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~   55 (314)
                      |+.++|+++++|++||..++..+.+..+.++.++.||+|++.+++++|   ++..
T Consensus        15 ~~~skKrLA~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~---~D~~   66 (92)
T 4asv_A           15 MSASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER---EAVS   66 (92)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCG---GGHH
T ss_pred             hhhhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc---hhhh
Confidence            678899999999999999999999999999999999999999999999   6533

>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A

Probab=98.33  E-value=5.2e-07  Score=53.44  Aligned_cols=45  Identities=27%  Similarity=0.575  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCC
Q psy4130           5 PEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDN   49 (314)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~   49 (314)
                      +|+++.+|++||+.++..+.++.+.++.++.|++|++.+++++|+
T Consensus         2 ~K~la~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~   46 (52)
T 4gof_A            2 KKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVE   46 (52)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred             chHHHHHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCcc
Confidence            578999999999999999999999999999999999999999993

>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B

Probab=98.22  E-value=2.1e-06  Score=54.86  Aligned_cols=47  Identities=15%  Similarity=0.488  Sum_probs=45.2

Q ss_pred             CCchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCC
Q psy4130           2 SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPD   48 (314)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p   48 (314)
                      +.++|+++++|++||...+..+.+..+.++.++.|++|++.++.++|
T Consensus         4 ~~~~K~la~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~   50 (74)
T 2lxb_A            4 SASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER   50 (74)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred             chhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence            46789999999999999999999999999999999999999999999

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.16  E-value=8.3e-05  Score=67.57  Aligned_cols=143  Identities=8%  Similarity=-0.010  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH---------------------------------------
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---------------------------------------  129 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---------------------------------------  129 (314)
                      +..|...+..+...|+.+.|...|++++.. |.+...|...                                       
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            566777777777778888888888888877 7765544433                                       


Q ss_pred             -HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130         130 -AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       130 -a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  207 (314)
                       +....+.++.+.|...|.+| ...+.....|...+.+....+ +.+.|...|+.+++..|+++..+..++......|+.
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence             33333466778888888888 433335566666666666555 588899999999888888888877777777778877


Q ss_pred             ccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         208 SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       208 ~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      +.|.          ...........+|..+..+...
T Consensus       371 ~~aR----------~l~er~~k~~~lw~~~~~fE~~  396 (493)
T 2uy1_A          371 ENAR----------ALFKRLEKTSRMWDSMIEYEFM  396 (493)
T ss_dssp             HHHH----------HHHHHSCCBHHHHHHHHHHHHH
T ss_pred             HHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence            6663          4444445566777777766444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.12  E-value=0.00019  Score=65.16  Aligned_cols=172  Identities=9%  Similarity=-0.052  Sum_probs=122.5

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhh--hhhccC-CCC----CChhhHHHHHHHHHHHHHHHh
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVL--QWYSNI-NFS----PTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~-~~~----~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      ..|+.+.|...|++++.. |   .+..+++..  ....+.+..  ...... ...    .....+.....|...+....+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P---~~~~l~~~y--~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r  298 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-S---DGMFLSLYY--GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK  298 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-C---CSSHHHHHH--HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhC-C---CcHHHHHHH--HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence            467899999999999999 9   554444422  111110000  000000 000    001122345678888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      .++.+.|...|+++ ...+.....|...|.+-...+ +.+.|...|+.+++..|+.+..|...+......|+.+.|...|
T Consensus       299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~  377 (493)
T 2uy1_A          299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF  377 (493)
T ss_dssp             HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88999999999999 433335567777777766666 6999999999999999999998888888888999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         181 TKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +++    +.....|..........|+.+.+.
T Consensus       378 er~----~k~~~lw~~~~~fE~~~G~~~~~r  404 (493)
T 2uy1_A          378 KRL----EKTSRMWDSMIEYEFMVGSMELFR  404 (493)
T ss_dssp             HHS----CCBHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHH----HHHHHHHHHHHHHHHHCCCHHHHH
Confidence            998    456788888888888888887774

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.04  E-value=5.3e-05  Score=55.92  Aligned_cols=121  Identities=15%  Similarity=0.037  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKP------EQAVIEYSKAIDCDNSN--------PVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      .|.+++.|........+.|+.      +.-++.|++++..-|..        ...|...|.. ...++.++|.+.|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            455677888888888888988      88889999999876652        3456666644 56799999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130         151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  207 (314)
                      +++...+..|...|..-..+|+...|.+.+.+++.+.|..... ...+..-.+.|+.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~~  143 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQKK  143 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTCS
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCCC
Confidence            9998899999999999999999999999999999999986653 3333444444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.03  E-value=0.00033  Score=51.35  Aligned_cols=85  Identities=11%  Similarity=-0.003  Sum_probs=73.7

Q ss_pred             CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130         120 NSNPVYYCNRAASNNKLKN---YKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN  195 (314)
Q Consensus       120 p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  195 (314)
                      ...+.+.+++|+++.+..+   ..+++..++..+..+|. .-+.+|.||..++++|+|.+|+.+.+..++..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4578889999999998875   45799999999999885 5589999999999999999999999999999999998877


Q ss_pred             HHHHHHHHh
Q psy4130         196 NMQAAMSNL  204 (314)
Q Consensus       196 ~l~~~~~~~  204 (314)
                      ....+..+.
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.02  E-value=4.5e-05  Score=57.54  Aligned_cols=113  Identities=13%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---------VYYCNRAASNNKLKNYKLALRDCQIAIKIDP---H  155 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~  155 (314)
                      ..+.++.....++..+.|+.|+-....++.+..+++         .++..+|.+++..++|..|...|++|+...-   +
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            345677888889999999999999998777643322         3778899999999999999999999876531   1


Q ss_pred             ----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130         156 ----------------------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM  201 (314)
Q Consensus       156 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  201 (314)
                                            +.+..+.++.|+.+++++++|+..++..- ..-..+.+...||.+|
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence                                  12566777778888888887777765321 1123455555555543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.01  E-value=0.00011  Score=53.08  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130         121 SNPVYYCNRAASNNKLKN---YKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN  196 (314)
Q Consensus       121 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  196 (314)
                      -.+.+.+++|+++.+..+   ..+++..++..++.+|. .-+.++.||..++++|+|++|+.+.+.++++.|+|..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            457788889999888765   45788999999988884 46889999999999999999999999999999999888776


Q ss_pred             HHHHHHHh
Q psy4130         197 MQAAMSNL  204 (314)
Q Consensus       197 l~~~~~~~  204 (314)
                      ...+..+.
T Consensus       118 k~~Ie~ki  125 (134)
T 3o48_A          118 KSMVEDKI  125 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.93  E-value=5.5e-05  Score=54.56  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQ---AVIEYSKAIDCD-N-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      ..+.+.+|.++.+..+...   ++..++..++.+ | ..-++++.+|..+.++|+|.+|..+++..++..|++..+....
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4578889999998887766   999999988876 4 4667999999999999999999999999999999999887665


Q ss_pred             HHH
Q psy4130         164 GLA  166 (314)
Q Consensus       164 g~~  166 (314)
                      ..+
T Consensus       115 ~~i  117 (126)
T 1nzn_A          115 RLI  117 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.74  E-value=0.00019  Score=54.07  Aligned_cols=108  Identities=10%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC---
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---------KAYGRMGLAYTQMNDYKAALEAYTKAAELD---PN---  189 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~---  189 (314)
                      ++..-...+...+.|+.|+.....++.+..++.         .++..+|.+++..++|..|...|++++...   +.   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            455556677888999999999999777643322         478999999999999999999999987542   11   


Q ss_pred             -------------------CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC---ChHHHHHHHHhhc
Q psy4130         190 -------------------DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS---DPSIQQVFGELFA  242 (314)
Q Consensus       190 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~p~~~~~l~~~~~  242 (314)
                                         +.++.+.++.|+.+++++++|+          ...+.+|.   .|.+-.++++++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai----------~~Le~Ip~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI----------AILDGIPSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHH----------HHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH----------HHHhcCCchhcCHHHHHHHHHHhc
Confidence                               1268899999999999999996          55666554   7888888887753

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.73  E-value=0.00029  Score=50.97  Aligned_cols=79  Identities=10%  Similarity=0.013  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      +..-++.|.++.+..+   ...++..++..++.+|. ..++++.+|..+.++|+|++|..+++.+++..|++..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            4678888888888764   46799999999998884 5789999999999999999999999999999999998876655


Q ss_pred             HHH
Q psy4130         165 LAY  167 (314)
Q Consensus       165 ~~~  167 (314)
                      .+-
T Consensus       120 ~Ie  122 (134)
T 3o48_A          120 MVE  122 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.65  E-value=0.00039  Score=51.34  Aligned_cols=120  Identities=11%  Similarity=0.002  Sum_probs=93.2

Q ss_pred             HcCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         117 DCDNSNPVYYCNRAASNNKLKNY------KLALRDCQIAIKIDPH--------YAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       117 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      -..|.+++.|........+.|+.      ++-+..|++|+..-|-        .+..|.+.+.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            46799999999999999988999      8999999999998765        34567777755 567999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH-HHHHHHHhhcC
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS-IQQVFGELFAN  243 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~-~~~~l~~~~~~  243 (314)
                      ++.++.....+|...+....++|+...|.      ..+..+.-..+.+-+ +...+.++-..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kAR------kILg~AiG~~~k~~~~le~a~~nl~~~  141 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSK------QLLQKAVERGAVPLEMLEIALRNLNLQ  141 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHH------HHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence            99998888999999999999999999996      555555544444333 35556666443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.65  E-value=0.00079  Score=49.34  Aligned_cols=79  Identities=10%  Similarity=0.024  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      .....+++|+++.+..+   ..+++..++..++.+|. ..++++.+|..+.++|+|.+|..+++..++..|++..+....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            35678888999988775   46799999999998884 567899999999999999999999999999999998877655


Q ss_pred             HHH
Q psy4130         164 GLA  166 (314)
Q Consensus       164 g~~  166 (314)
                      ..+
T Consensus       118 ~~I  120 (144)
T 1y8m_A          118 SMV  120 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.0011  Score=62.61  Aligned_cols=59  Identities=14%  Similarity=0.114  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      .+..-+..+...|+|+-|+.+.++|+...|.....|+.|+.+|..+|+|+.|+-.++-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666667777777777777777777777777777777777777777777666544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.46  E-value=0.024  Score=51.46  Aligned_cols=114  Identities=8%  Similarity=0.003  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLA  166 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~  166 (314)
                      ...|..+-..+.+.|++++|...|++..+.. ..+...|..+-..|.+.|++++|...+++..+..-. +...|..+-.+
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            4456667777777777777777777766542 224556666777777777777777777777765422 45666677777


Q ss_pred             HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Q psy4130         167 YTQMNDYKAALEAYTKAAEL--DPNDPLYANNMQAAMSN  203 (314)
Q Consensus       167 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~  203 (314)
                      +.+.|+.++|.+.+++.-+.  .|+ ...+..+-..+..
T Consensus       185 ~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~s  222 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHHS
T ss_pred             HhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHhc
Confidence            77777777777777776553  343 3334444444333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.13  E-value=0.06  Score=48.78  Aligned_cols=146  Identities=8%  Similarity=-0.043  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCC-CcHHHH
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIKIDP-HYAKAY  160 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p-~~~~~~  160 (314)
                      +...-..+.+.|++++|+..|++..+.. +.+...|..+-.++...         +..++|...|++.....- -+...|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            4444567778889999999888877653 22445555555455433         336788888888776542 256778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh-ccCChHHHHHHH
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELD-PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK-VLSDPSIQQVFG  238 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~p~~~~~l~  238 (314)
                      ..+-..+.+.|++++|...|++..+.. .-+...|..+-..+.+.|+.++|.      ..+.++... +..|...+..+-
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~------~l~~~M~~~G~~Pd~~ty~~Li  182 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY------EVDAHMVESEVVPEEPELAALL  182 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH------HHHHHHHhcCCCCCHHHHHHHH
Confidence            888888888888888888888877642 125667777888888888888886      555554443 222444444444


Q ss_pred             HhhcC
Q psy4130         239 ELFAN  243 (314)
Q Consensus       239 ~~~~~  243 (314)
                      ..+.+
T Consensus       183 ~~~~~  187 (501)
T 4g26_A          183 KVSMD  187 (501)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.09  E-value=0.017  Score=50.63  Aligned_cols=141  Identities=12%  Similarity=-0.036  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCcHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL-RDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~  162 (314)
                      .+-.....+...|......++.+.|...+++++.+....+-.  ...     ...|-.+. ..+++.      ...+...
T Consensus       110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~  176 (388)
T 2ff4_A          110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTA  176 (388)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHH
Confidence            344444555566666677899999999999999985332100  000     01111111 111111      1123445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc------cCChHHHHH
Q psy4130         163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV------LSDPSIQQV  236 (314)
Q Consensus       163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~p~~~~~  236 (314)
                      ++.++...|++.+|+..+.+++..+|-+..++..+..++...|+..+|.      ..|..+.+.+      ...|++..+
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al------~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL------GAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH------HHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            5666667777777777777777777777777777777777777777776      6665554433      224566666


Q ss_pred             HHHhhcC
Q psy4130         237 FGELFAN  243 (314)
Q Consensus       237 l~~~~~~  243 (314)
                      +..++..
T Consensus       251 ~~~il~~  257 (388)
T 2ff4_A          251 NERILRQ  257 (388)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            6666543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.80  E-value=0.01  Score=53.47  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      .+..+|.+......+..|..+|.+|+.+.|++...|..||.+....|+.-+|+.+|-+++......+.+..++..++.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            45567777777777788888888888888888888888888888888888888888888877666777888887777654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.56  E-value=0.018  Score=51.96  Aligned_cols=80  Identities=18%  Similarity=0.090  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      ..+..+|+.......+..|..+|.+|+.+.|.+...|+.+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999998877778887777776654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.47  E-value=0.063  Score=40.49  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK--I---------------  152 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~---------------  152 (314)
                      +.-..++..++-.|+|..++-++..   +  +.....+..+.||.+.++|..|+.+++..+.  .               
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~---l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK---L--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT---C--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh---c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            4456677788889999988776532   2  3456667788999999999999999999993  2               


Q ss_pred             CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         153 DPHYAK-AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       153 ~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      +|.+-+ .+..+|.++...|+.++|+.+|.......|-.+.+
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            233333 45678999999999999999999999999876654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.016  Score=54.91  Aligned_cols=109  Identities=11%  Similarity=0.007  Sum_probs=81.9

Q ss_pred             cCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--Hc-cCHHHHHHHHHHHHHh--------CCCc----------HHH
Q psy4130         102 QDK-PEQAVIEYSKAIDCDNSNPVYYCNRAASNN--KL-KNYKLALRDCQIAIKI--------DPHY----------AKA  159 (314)
Q Consensus       102 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-~~~~~A~~~~~~al~~--------~p~~----------~~~  159 (314)
                      .+. ++.|+..+++....+|.... ++..+.+..  .. .+--+|++.+.++++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 58899999999999987654 333333322  12 3455688888777742        2232          234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +..-+..+...|+++-|+.+-++|+...|.....|+.|+.||..+|+++.|.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL  391 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL  391 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence            4455777888999999999999999999999999999999999999999996

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.36  E-value=0.093  Score=42.87  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=57.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA  159 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  159 (314)
                      .+++.|++++|+......++.+|.++.....+...+.-.|+|+.|.+-++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            46788999999999999999999999999999999999999999999999999999987643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.80  E-value=0.11  Score=45.33  Aligned_cols=48  Identities=6%  Similarity=-0.047  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCCC
Q psy4130         193 YANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQ  246 (314)
Q Consensus       193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~  246 (314)
                      +...++..+...|++.+++      ..+...+...|-+..++..+-.++...+.
T Consensus       173 a~~~~~~~~l~~g~~~~a~------~~l~~~~~~~P~~E~~~~~lm~al~~~Gr  220 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVI------AELEALTFEHPYREPLWTQLITAYYLSDR  220 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHCCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            4455666667777777776      66666666666666665555555444443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.60  E-value=0.2  Score=43.68  Aligned_cols=116  Identities=13%  Similarity=-0.064  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcH----H
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKID---PHYA----K  158 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~----~  158 (314)
                      -..+|..|+..|+|.+|...+.+.++....      -.+++.....+|...+++.++...+.+|....   +.++    .
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            347899999999999999999988874222      13567778889999999999999999987653   1233    4


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--C---HHHHHHHHHHHHHhccc
Q psy4130         159 AYGRMGLAYT-QMNDYKAALEAYTKAAELDPN--D---PLYANNMQAAMSNLNNS  207 (314)
Q Consensus       159 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~---~~~~~~l~~~~~~~~~~  207 (314)
                      ....-|..+. ..++|..|...|-++++-...  +   ..+...++.|....++.
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence            4555688888 899999999999999864322  1   23445566666665553

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.28  E-value=0.099  Score=42.70  Aligned_cols=62  Identities=19%  Similarity=0.028  Sum_probs=57.2

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130         132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY  193 (314)
Q Consensus       132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  193 (314)
                      -+.+.|+.++|+..+...|+.+|.++.....+-.+++-.|+|++|.+-++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            35678999999999999999999999999999999999999999999999999999987543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.99  E-value=0.23  Score=47.38  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHc
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI--------KIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~  170 (314)
                      ....|+++.|.+..+     ..++...|..+|..+.+.++++.|+.+|.++-        .....+.+.+..++......
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            456677877776643     23567788888888888888888888888752        11234455555666666666


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      |++..|...|.+.     ++   ......++...+++++|.
T Consensus       737 ~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~  769 (814)
T 3mkq_A          737 GKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAA  769 (814)
T ss_dssp             TCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHH
T ss_pred             CchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHH
Confidence            6666666555432     11   112234456666666663

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.21  Score=44.24  Aligned_cols=99  Identities=11%  Similarity=0.001  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcH----HHHH
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP--HYA----KAYG  161 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~  161 (314)
                      ++..+|..++..|+++.|.+.|.++......   -.+.+.....++...++|..+...+.++-.+-.  .++    ....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5678999999999999999999998876432   356788888899999999999999999876522  222    3445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPN  189 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~  189 (314)
                      ..|.++...++|..|...|..++.....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            5677788899999999999998876543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.74  E-value=2.1  Score=37.94  Aligned_cols=102  Identities=12%  Similarity=0.042  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCC
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--S----NPVYYCNRAASNNKLKNYKLALRDCQIAIK---IDPH  155 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~  155 (314)
                      ....+.....++..+...|++.+|...+.....-.-  .    -.+++.....+|...++|.+|...+.++..   ..+.
T Consensus       133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~  212 (445)
T 4b4t_P          133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK  212 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence            345677788999999999999999999988764211  1    145778888999999999999999998742   2333


Q ss_pred             cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130         156 YA----KAYGRMGLAYTQMNDYKAALEAYTKAAEL  186 (314)
Q Consensus       156 ~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~  186 (314)
                      .+    ..+...|..+...++|.+|..+|..++..
T Consensus       213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            33    56677889999999999999999998875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.72  E-value=0.42  Score=47.89  Aligned_cols=113  Identities=16%  Similarity=0.062  Sum_probs=84.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI----------------------  152 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------  152 (314)
                      +...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-.-                      
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3444556666665543    34566778878899999999999999999999886321                      


Q ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH----HHHHHHHHHHHHhcccccCC
Q psy4130         153 -DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP-NDP----LYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       153 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~l~~~~~~~~~~~~A~  211 (314)
                       ....+..|..+..++...+.++.+++.-+.|++..+ ++.    ..|.++-..+..++++++|-
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay  958 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH  958 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence             111235677788888899999999999999998765 333    26777888889999999996

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.11  E-value=1.1  Score=43.89  Aligned_cols=99  Identities=5%  Similarity=-0.101  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAKAYGRM  163 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  163 (314)
                      ...+..+-..+.+.|+.++|...|.+.-+.    ..-+...|..+-..|.+.|++++|...|++..... .-+...|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            446888889999999999999999764432    23467789999999999999999999999998864 2356777777


Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHhhC
Q psy4130         164 GLAYTQMND-YKAALEAYTKAAELD  187 (314)
Q Consensus       164 g~~~~~~g~-~~~A~~~~~~al~~~  187 (314)
                      -.++.+.|+ .++|...|++.....
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            778888887 578899999988753

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.67  E-value=2.5  Score=31.94  Aligned_cols=69  Identities=3%  Similarity=-0.075  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--c---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID--C---------------DNSNPV-YYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      ....+....|+.+.++|..|+.+++..+.  .               +|.+.+ .+..+|.++.+.|+.++|+.++....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            44567778899999999999999999993  2               233444 45668999999999999999999988


Q ss_pred             HhCCCcH
Q psy4130         151 KIDPHYA  157 (314)
Q Consensus       151 ~~~p~~~  157 (314)
                      ..+|-.+
T Consensus       142 ~~~~lf~  148 (242)
T 3kae_A          142 GKSFLFS  148 (242)
T ss_dssp             HHCCCHH
T ss_pred             CCccccc
Confidence            8876433

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.61  E-value=0.41  Score=43.03  Aligned_cols=123  Identities=12%  Similarity=-0.004  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHH----------HHHHHHHHc-----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAV----------IEYSKAIDC-----DN-SNPVYYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~----------~~~~~al~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      +.-.+..|+..+.++...|+.....          ..+-.+++.     |+ ..+.++..+-..|...+.|+.|.....+
T Consensus       177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk  256 (523)
T 4b4t_S          177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK  256 (523)
T ss_dssp             --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence            4455677887777777777665432          122222221     22 2345677788889999999999999999


Q ss_pred             HHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhccccc
Q psy4130         149 AIKIDPHY-------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-------LYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       149 al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~  209 (314)
                      +.  .|..       ...++.+|.++...++|.+|.+++..|+...|.+.       .++..+..|..-+|+.++
T Consensus       257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~  329 (523)
T 4b4t_S          257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE  329 (523)
T ss_dssp             HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence            85  3432       46788899999999999999999999999887542       345555666666788764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.51  E-value=2.2  Score=32.52  Aligned_cols=48  Identities=17%  Similarity=0.034  Sum_probs=36.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      .....|+++.|.+..+..     ++...|..+|......|+++-|+.+|.++-
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            345678888888776654     567788888888888888888888887754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.18  E-value=1.8  Score=37.73  Aligned_cols=94  Identities=13%  Similarity=-0.046  Sum_probs=70.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----HHH
Q psy4130         128 NRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELD---PNDP----LYA  194 (314)
Q Consensus       128 ~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~----~~~  194 (314)
                      .+|..|+..|+|.+|...+.+..+-...      -.+.+..-..+|..++++.++...|.++....   +.+|    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999999988874322      23667778889999999999999999987653   1223    345


Q ss_pred             HHHHHHHH-HhcccccCCCCCCCcchHHHHHHhc
Q psy4130         195 NNMQAAMS-NLNNSSSASGSGGVFPGLSEMSTKV  227 (314)
Q Consensus       195 ~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~  227 (314)
                      ..-|..+. ..++|..|.      ..|.+.....
T Consensus       184 ~~~Gi~~l~~~rdyk~A~------~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAF------SYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHH------HHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHH------HHHHHHHhcc
Confidence            55677777 788998887      6666665444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.75  E-value=1.7  Score=41.32  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKA  115 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~a  115 (314)
                      ...|..+|..+.+.++++.|+.+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            468999999999999999999999986

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.49  E-value=1  Score=45.14  Aligned_cols=119  Identities=11%  Similarity=-0.022  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------CCCCHHHHHHHHHHHHHccCHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----------------------DNSNPVYYCNRAASNNKLKNYKLALRD  145 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~  145 (314)
                      +...+.+|.++...|++++|..+|+++-.-                       ....+.+|.....++.+.+.++.+++.
T Consensus       842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f  921 (1139)
T 4fhn_B          842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF  921 (1139)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344588999999999999999999887321                       011235677778888899999999999


Q ss_pred             HHHHHHhCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130         146 CQIAIKIDPH-YA----KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS  208 (314)
Q Consensus       146 ~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  208 (314)
                      .+.|++..+. +.    ..|.++=..+..+|+|++|...+...-. ..........|-..++..+..+
T Consensus       922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCChh
Confidence            9999987643 32    2677888889999999999888765432 2234566666666666665543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=90.21  E-value=2.9  Score=41.04  Aligned_cols=87  Identities=10%  Similarity=0.020  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKI----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL--DPNDPLYANNM  197 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  197 (314)
                      ..|..+-..|.+.|+.++|...|.+..+.    ..-+...|..+-..+.+.|++++|.+.|++..+.  .| |...|..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence            45778888999999999999999775432    2346788999999999999999999999998874  45 56677778


Q ss_pred             HHHHHHhccc-ccCC
Q psy4130         198 QAAMSNLNNS-SSAS  211 (314)
Q Consensus       198 ~~~~~~~~~~-~~A~  211 (314)
                      -.++.+.|+. ++|.
T Consensus       207 I~glcK~G~~~e~A~  221 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIE  221 (1134)
T ss_dssp             HHHHHHHTCCHHHHH
T ss_pred             HHHHHhCCCcHHHHH
Confidence            7888888885 4554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.07  E-value=1.8  Score=32.89  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130         121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA  183 (314)
Q Consensus       121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  183 (314)
                      .++...+.++   ...|+++.|.+..+..     ++...|..||......|+++-|..+|.++
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3455555554   4789999999998765     67889999999999999999999999875

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.99  E-value=11  Score=31.78  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         155 HYAKAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       155 ~~~~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      .++..+..+|..+++.+++.+|...|
T Consensus       134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          134 GDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            57889999999999999999998887

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.96  E-value=2.5  Score=39.24  Aligned_cols=50  Identities=4%  Similarity=-0.308  Sum_probs=25.4

Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      +.|++..|..++.+.-..........|.+|.++..+|+.++|...|+++.
T Consensus       297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44555555555544333222334555555555555555555555555554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.65  E-value=2.9  Score=38.81  Aligned_cols=49  Identities=4%  Similarity=-0.230  Sum_probs=21.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      .++++.|..+|++.-..........+-+|.++...|+.++|...|+++.
T Consensus       298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3444444444443222112233334444444444444444444444444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.36  E-value=0.73  Score=40.72  Aligned_cols=99  Identities=10%  Similarity=-0.052  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHH----
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP--NDPL----  192 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~----  192 (314)
                      -..++..+|..|...|++++|.++|.++......   -...+..+..++...++|..+...+.++..+-.  .++.    
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            3457889999999999999999999998876433   357888888999999999999999999876522  2332    


Q ss_pred             HHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         193 YANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                      .....|.++...+++.+|.      ..|.+....
T Consensus       210 lk~~~gl~~l~~r~f~~Aa------~~f~e~~~t  237 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAA------KLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHH------HHHHHHhcc
Confidence            2334445555666776665      555554443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.81  E-value=12  Score=36.79  Aligned_cols=94  Identities=18%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C--------------------
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-D--------------------  153 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--------------------  153 (314)
                      +...+...+.++-|    .+.+...|.++..-+.+|.+|...|++++|..+|++|-.- .                    
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            45566667777654    3355677888888899999999999999999999986521 0                    


Q ss_pred             CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHH
Q psy4130         154 PH--YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL-DPNDPL  192 (314)
Q Consensus       154 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~  192 (314)
                      +.  ....|.....++...+-++-++...+.|+.. .++++.
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence            11  1246778888999999999999999999974 455554

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=85.86  E-value=5.6  Score=29.80  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=58.7

Q ss_pred             CchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCC
Q psy4130           3 IKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPT   82 (314)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (314)
                      +|.-+.-..+|.|+..++..++.    ...+...++-..+.+.-++.+..+                             
T Consensus        16 dDPL~~w~~yIkW~e~~~p~~~~----~s~L~~lLErc~~~f~~~~~YknD-----------------------------   62 (164)
T 2wvi_A           16 NDPLDVWDRYISWTEQNYPQGGK----ESNMSTLLERAVEALQGEKRYYSD-----------------------------   62 (164)
T ss_dssp             SCTHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHTTTCGGGTTC-----------------------------
T ss_pred             CCChHHHHHHHHHHHHHCcCCCc----cchHHHHHHHHHHHhhhhhhhccC-----------------------------
Confidence            34556667888888888765541    233433333333344444544333                             


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP  154 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  154 (314)
                         +.....|...+...   ++   +.+.|......  .-..+..|...|..+...|++.+|...|+..++...
T Consensus        63 ---~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A  127 (164)
T 2wvi_A           63 ---PRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA  127 (164)
T ss_dssp             ---HHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence               33344455544432   22   44445544432  344566666667777777777777777777776653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.74  E-value=2.3  Score=38.32  Aligned_cols=69  Identities=17%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN-------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY  156 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  156 (314)
                      ...+..+..+-..|...+.|++|.....++.  .|..       ..+++.+|.++.-.++|.+|..++..|++..|.+
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            3556778888899999999999999999874  5543       4567889999999999999999999999988754

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=83.05  E-value=12  Score=27.66  Aligned_cols=46  Identities=11%  Similarity=-0.052  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130         108 AVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID  153 (314)
Q Consensus       108 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  153 (314)
                      +.+.|......  .-..+..|...|..+...|++.+|...|+..++.+
T Consensus        84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~  131 (152)
T 4a1g_A           84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ  131 (152)
T ss_dssp             HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            44555444432  23445556666666666666666666666666654

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=82.53  E-value=8.6  Score=30.35  Aligned_cols=65  Identities=11%  Similarity=0.014  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  155 (314)
                      ++.....|...+..      .+.+...|......  .-..+..|...|..+...|++.+|...|+..++....
T Consensus       116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~  182 (223)
T 4aez_C          116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK  182 (223)
T ss_dssp             CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred             CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence            44445566655542      13455566655543  3456777777888888888888888888888887643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.18  E-value=15  Score=32.42  Aligned_cols=104  Identities=12%  Similarity=-0.102  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCH--
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKID----PH--YAKAYGRMGLAYTQMNDYKAALEAYTKAAE---LDPNDP--  191 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~--  191 (314)
                      +.+...|+.+|...|++.+|...+.....-.    +.  -.+.+.....++...+++..|...++++..   -.+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            3456789999999999999999998876421    11  246778888999999999999999998642   233333  


Q ss_pred             --HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc--cCChH
Q psy4130         192 --LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--LSDPS  232 (314)
Q Consensus       192 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~p~  232 (314)
                        ..+...+.++...++|.+|.      ..|.++....  ..||.
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~------~~y~e~~~~~~~~~d~~  255 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVA------QYLQEIYQTDAIKSDEA  255 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHH------HHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHH------HHHHHHHhcccccCCHH
Confidence              35667777888888888886      6666665543  33554

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=80.65  E-value=6.1  Score=35.06  Aligned_cols=108  Identities=10%  Similarity=-0.073  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHcCCC--------C-----H---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C--------c
Q psy4130         103 DKPEQAVIEYSKAIDCDNS--------N-----P---VYYCNRAASNNKLKNYKLALRDCQIAIKIDP--H--------Y  156 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~--------~-----~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~--------~  156 (314)
                      ...+++...+.++....-.        +     .   ....++-.+|++.++..-+...++..-...+  .        -
T Consensus       140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~  219 (455)
T 3t5v_B          140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ  219 (455)
T ss_dssp             HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence            3456677777777765211        1     0   1234566789999999888888865544432  1        2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----------HHHHHHHHHHHHHhcccccC
Q psy4130         157 AKAYGRMGLAYTQMNDYKAALEAYTKAAEL-DPND----------PLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----------~~~~~~l~~~~~~~~~~~~A  210 (314)
                      +...|.+|..+...++|.+|.+.+..|+.. .|..          ..++..+--+..-+|+...-
T Consensus       220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~  284 (455)
T 3t5v_B          220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKW  284 (455)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCH
Confidence            467889999999999999999999999998 7754          12344455566667776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-19
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-17
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-16
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-14
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-13
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-13
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-13
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-12
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-12
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-11
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-09
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-10
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-09
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-07
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	5e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	7e-06
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	1e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	2e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	5e-04
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 6e-19
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 6/174 (3%)

Query: 34  EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKY 92
           + AV    +A  +  N            ++    D  +  Y   I   P        + Y
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-----PDAY 274

Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
            NL N   ++    +A   Y+ A+    ++     N A    +  N + A+R  + A+++
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
            P +A A+  +     Q    + AL  Y +A  + P      +NM   +  + +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (192), Expect = 5e-17
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 4/177 (2%)

Query: 34  EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYK 93
            +A+    KA  +  N   A       L +    D  +  Y              A  + 
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL----SLSPNHAVVHG 241

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
           NL     +Q   + A+  Y +AI+     P  YCN A +  +  +   A      A+++ 
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           P +A +   +     +  + + A+  Y KA E+ P      +N+ + +        A
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 3e-15
 Identities = 27/122 (22%), Positives = 52/122 (42%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           A  + NLG     Q +   A+  + KA+  D +    Y N      + + +  A+     
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
           A+ + P++A  +G +   Y +      A++ Y +A EL P+ P    N+  A+    + +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 209 SA 210
            A
Sbjct: 289 EA 290

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 4e-11
 Identities = 14/80 (17%), Positives = 28/80 (35%)

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
            L +   Q    E A     +    +  N       ++ + + +    +     +AIK +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 154 PHYAKAYGRMGLAYTQMNDY 173
           P  A+AY  +G  Y +    
Sbjct: 64  PLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 9/63 (14%), Positives = 22/63 (34%)

Query: 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
           +  +++ A R C    + +P        +   + Q      +    T A + +P      
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 195 NNM 197
           +N+
Sbjct: 71  SNL 73

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 5/48 (10%), Positives = 15/48 (31%)

Query: 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
           +     Q  D++AA     +    +P++      + +          +
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS 52

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.5 bits (187), Expect = 3e-17
 Identities = 31/110 (28%), Positives = 49/110 (44%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
            A++ K  GN      K  +A   Y +AI  +    VYY NRA    K++  + AL DC+
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
            A+++D    KA+  +G    +M  Y  A+    +A  L     L   + 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 18/192 (9%), Positives = 57/192 (29%), Gaps = 9/192 (4%)

Query: 19  ELLRDTLNAESKEG-IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN 76
           + L++  N          A  C  +A    P      +N  +  L     +  +      
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 77  INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
           +            + +  LG   ++ +  ++A+    +A        + + +   S  ++
Sbjct: 65  LELDGQSV-----KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

Query: 137 --KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
             K    ++ + +I  + + H             ++ + +   E +     +        
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 195 NNMQAAMSNLNN 206
                 M++++ 
Sbjct: 180 AKHDKYMADMDE 191

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 17/76 (22%), Positives = 25/76 (32%)

Query: 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
             + Y  A      AI  +P  A  Y    L Y +M   + AL    +A ELD       
Sbjct: 16  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75

Query: 195 NNMQAAMSNLNNSSSA 210
             +      + +   A
Sbjct: 76  FFLGQCQLEMESYDEA 91

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 4e-16
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +A K K LGN A ++   + A+  Y KA + D +N  Y  N+AA   +  +Y      C+
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 148 IAIKIDP-------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
            AI++           AKAY R+G +Y +   YK A+  Y K+        +     QA
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           A     +G    +  D+  AL+ Y KA ELDP +  Y  N  A      +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 2e-14
 Identities = 35/120 (29%), Positives = 56/120 (46%)

Query: 81  PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
           P +     AE+ K   N   +    E A+  YS+AI+ + SN +YY NR+ +  + + Y 
Sbjct: 2   PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 61

Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
            AL D   AI++D  Y K Y R   +   +  ++AAL  Y    ++ P+D       Q  
Sbjct: 62  YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.3 bits (163), Expect = 2e-13
 Identities = 17/168 (10%), Positives = 48/168 (28%), Gaps = 8/168 (4%)

Query: 34  EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYK 93
              +           +   + +     L QL+ + +             +E+        
Sbjct: 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-------- 212

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
            L   A   D  +Q+   Y + +                +  L++   + ++ Q     +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
                    +  A   +   K  L+ ++    +DP    Y +++++  
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 31/113 (27%), Positives = 52/113 (46%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +  + K  GN A+     + A+  YS+AI  D  N V Y NR+A+  K  +Y+ A  D  
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
             + + P + K Y R   A   +N ++ A   Y +  + + N+P     +Q  
Sbjct: 62  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 6e-13
 Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 2/124 (1%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
              K   LG  + +Q      V   S +      +     +             A    +
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYR 176

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
            A ++ P   + Y ++ +  +   D+   +  Y ++  +    P  + N+Q A+S    S
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES 236

Query: 208 SSAS 211
               
Sbjct: 237 RDEV 240

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 8/146 (5%)

Query: 34  EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKY 92
              ++ LC  +++       +S + I S  Q +    V    S+ ++             
Sbjct: 103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-------QHCL 155

Query: 93  KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
            +LG+ A  +++  QA   Y  A     SN   Y   A   +   ++   +     +I +
Sbjct: 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215

Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALE 178
              +  A   +  A ++  + +  ++
Sbjct: 216 KFPFPAASTNLQKALSKALESRDEVK 241

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 7e-09
 Identities = 10/140 (7%), Positives = 26/140 (18%), Gaps = 38/140 (27%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK------------- 135
            +           +   +     Y K +  D    +         N              
Sbjct: 20  TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQA 76

Query: 136 ----------------------LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173
                                    Y   L++      +D        ++G+   +    
Sbjct: 77  KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHT 136

Query: 174 KAALEAYTKAAELDPNDPLY 193
            A ++  + +        L 
Sbjct: 137 SAIVKPQSSSCSYICQHCLV 156

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 6e-12
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 75  SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC---------------- 118
           ++++    +++ + +E  KN+GNT  +    E A+ +Y+K +                  
Sbjct: 13  ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL 72

Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
                    N  A   K+ +++ A+  C  A++IDP   KA  R    +  + +Y  AL 
Sbjct: 73  QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 132

Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNN 206
              KA E+ P D      +      +  
Sbjct: 133 DLKKAQEIAPEDKAIQAELLKVKQKIKA 160

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 21/92 (22%), Positives = 34/92 (36%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
                N+G   ++    + AV    +A++ D SN      RA     LK Y  AL D + 
Sbjct: 77  LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 136

Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
           A +I P        +     ++   K   +A 
Sbjct: 137 AQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 60.7 bits (146), Expect = 7e-12
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 82  TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC---------------DNSNPVYY 126
           T+E   +A   K  G    +  K  QAVI+Y K +                 ++     +
Sbjct: 8   TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 67

Query: 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
            N A    KL+ Y  A+  C  A+ +D    K   R G A   MN++++A   + K  E+
Sbjct: 68  LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127

Query: 187 DPNDPLYANNMQAAMSNLNN 206
           +P +      +         
Sbjct: 128 NPQNKAARLQIFMCQKKAKE 147

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 49.2 bits (116), Expect = 7e-08
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 3/115 (2%)

Query: 65  YYKDEVLQWYSNINFSPTEEVKIEAEK---YKNLGNTAMQQDKPEQAVIEYSKAIDCDNS 121
            Y   V         S  E    E+     + NL    ++  +  +AV    KA+  D++
Sbjct: 37  QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA 176
           N      R  +   +  ++ A  D +  ++++P    A  ++ +   +  ++   
Sbjct: 97  NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 4/122 (3%)

Query: 27  AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLF----QLYYKDEVLQWYSNINFSPT 82
            ++       V  L   Y + +    AS   + + F      Y K               
Sbjct: 32  VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 91

Query: 83  EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
                  +     G   +  ++ E A  ++ K ++ +  N            K K +   
Sbjct: 92  GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151

Query: 143 LR 144
            R
Sbjct: 152 DR 153

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 15/106 (14%), Positives = 35/106 (33%)

Query: 96  GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155
              A+ + + +QA+    +AI     +     +         +++ A      +IK+ P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
           Y     ++          K   +    A  L  N+ L  + +   +
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNL 108

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 12/113 (10%), Positives = 25/113 (22%), Gaps = 1/113 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD-CQ 147
           A    +           E+A  +  ++I                    +  K   +    
Sbjct: 30  ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
             +  +                  DY+   E   +  EL       AN+   +
Sbjct: 90  AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFS 142

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 82  TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---------------- 125
            EE    A   K  GN   ++++  +A+++Y +A+D       +                
Sbjct: 10  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 69

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
             N A   NK K+Y  A+      +KID +  KA  ++G+A       + A E   KAA 
Sbjct: 70  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129

Query: 186 LDPNDPLYANNMQAAMSNLNNS 207
           L+PN+    N+ +  ++ L  +
Sbjct: 130 LNPNNLDIRNSYELCVNKLKEA 151

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 14/115 (12%), Positives = 35/115 (30%)

Query: 60  SLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD 119
             ++      +     +      ++  IE     NL     +     +A+   SK +  D
Sbjct: 38  VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97

Query: 120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK 174
            +N         +N      + A  +   A  ++P+         L   ++ + +
Sbjct: 98  KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 4e-11
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           EA    N G  A  +   + A+  +S   D    +     N       LKN   A +   
Sbjct: 4   EAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFT 60

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
            +I  D H A AY + G+ Y Q   Y  A++   +A      + L    +      L  
Sbjct: 61  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 119

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 18/134 (13%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
           +    N+G          +A   ++++I+ D    V Y  R     + + Y LA++D + 
Sbjct: 36  SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 95

Query: 149 AIKIDPHYA----------------KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
           A+                       +    +   Y +  ++K A E    A  +      
Sbjct: 96  ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155

Query: 193 YANNMQAAMSNLNN 206
             + +  AM  +  
Sbjct: 156 --SKIDKAMECVWK 167

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 3e-10
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 15/141 (10%)

Query: 82  TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---------------VYY 126
           +EE   ++   K  G    ++ K +QA+++Y K +                        +
Sbjct: 6   SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 65

Query: 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
            N A  + KL+ +  A+  C  A+++D +  K   R G A+  +ND++ A   + K  +L
Sbjct: 66  LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125

Query: 187 DPNDPLYANNMQAAMSNLNNS 207
            PN+      +      +   
Sbjct: 126 YPNNKAAKTQLAVCQQRIRRQ 146

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 65  YYKDEVLQWYSNINFSPTEEVKIEAEK---YKNLGNTAMQQDKPEQAVIEYSKAIDCDNS 121
            YK  V       +FS  E  K +A +   + NL    ++      A+   +KA++ D++
Sbjct: 35  QYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94

Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA-- 179
           N      R  ++  + +++LA  D Q  +++ P+   A  ++ +   ++    A  +   
Sbjct: 95  NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 154

Query: 180 ---YTKAAELDP 188
              + + AE + 
Sbjct: 155 ANMFERLAEEEN 166

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (130), Expect = 2e-09
 Identities = 11/114 (9%), Positives = 38/114 (33%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
           +  L    + + + ++ + ++ +  D +            + ++    +    D      
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
           +  H ++    +G  Y  + D  +A   +  A   + ++ +        +S L 
Sbjct: 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 29/153 (18%), Positives = 50/153 (32%)

Query: 54  SNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYS 113
           S V    L     ++ +L     I  S        A+     G           A  ++S
Sbjct: 2   SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 61

Query: 114 KAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173
           +A+      P  +        +  N+  A       +++DP Y  A+   G+A       
Sbjct: 62  QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 121

Query: 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           K A +      + DPNDP  +  +  A   L+ 
Sbjct: 122 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 16/116 (13%), Positives = 48/116 (41%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
              LG       + ++AV  ++ A+    ++ + +    A+       + A+   + A++
Sbjct: 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234

Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
           + P Y ++   +G++   +  ++ A+E + +A  +            A   N+ ++
Sbjct: 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 290

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 14/116 (12%), Positives = 38/116 (32%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
           +  +    G   +Q+     AV+ +  A+  D  +   +     +  + +   LA+   +
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
             +++ P    A   + +++T  +  + A E         P         +     
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 22/159 (13%), Positives = 43/159 (27%), Gaps = 13/159 (8%)

Query: 36  AVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNL 95
             E    A  +              L  L+          +   +       +   +  L
Sbjct: 155 VKELFLAAVRLDPTSID--PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 212

Query: 96  GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155
           G T    ++ E+AV  Y +A++          N   S   L  ++ A+     A+ +   
Sbjct: 213 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272

Query: 156 YAKAYGR-----------MGLAYTQMNDYKAALEAYTKA 183
                G            + LA + +    A   A  + 
Sbjct: 273 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 15/128 (11%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
            E ++ LG T  + ++   A+    + ++    N       A S       + A    + 
Sbjct: 53  MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 112

Query: 149 AIKIDPHYAKAYGRMGLA---------------YTQMNDYKAALEAYTKAAELDPNDPLY 193
            ++  P YA                            + +    E +  A  LDP     
Sbjct: 113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172

Query: 194 ANNMQAAM 201
                  +
Sbjct: 173 DVQCGLGV 180

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
           GL   Q  D   A+  +  A + DP        +    +    
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 68

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 7e-08
 Identities = 7/58 (12%), Positives = 18/58 (31%)

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
           + I     +   Y        +    + A +    A EL+  +    +  +  + +L 
Sbjct: 34  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 91

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 21/187 (11%), Positives = 56/187 (29%), Gaps = 11/187 (5%)

Query: 28  ESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVK 86
           +  E  E A +    A ++   N        +          E + + + I     +   
Sbjct: 54  QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY- 112

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
              + + +          P Q +   +  ++ D  N   + +R     + K +   L+  
Sbjct: 113 ---QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 169

Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYK------AALEAYTKAAELDPNDPLYANNMQAA 200
              +K D      + +     +    Y         ++   +  +L P++    N ++  
Sbjct: 170 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 229

Query: 201 MSNLNNS 207
           + +   S
Sbjct: 230 LQDRGLS 236

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 1/123 (0%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQ 147
            + Y        + ++ E+A      AI+ + +N   +  R      L K+    +    
Sbjct: 43  RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 102

Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
             I+  P   + +    +    + D    LE        D  +     + Q  +      
Sbjct: 103 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 162

Query: 208 SSA 210
            + 
Sbjct: 163 DNE 165

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 24/156 (15%)

Query: 81  PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID------------CDNSNPVYYCN 128
           P +EV   A    +     +   + ++A     +A++                +   +  
Sbjct: 2   PLKEVV-GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 129 RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG-----------RMGLAYTQMNDYKAAL 177
            A +   L+++  AL     A+       +                 LA   +     A+
Sbjct: 61  LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120

Query: 178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGS 213
             + K  E+           +  M    +  +  G+
Sbjct: 121 PEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 156

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 7e-06
 Identities = 6/117 (5%), Positives = 31/117 (26%), Gaps = 5/117 (4%)

Query: 94  NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRA---ASNNKLKNYKLALRDCQIAI 150
            + N  +  +   +   ++       + +       A          + +  +   +  +
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 151 KI--DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
                         + +   ++ +Y+ AL+      + +P +       +     + 
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 22/125 (17%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------------VY 125
                K  G  A    + EQA    S A+                             + 
Sbjct: 10  RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLA 69

Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
           +  +A +          + + +      P+    + ++  AY   +    AL AY +   
Sbjct: 70  HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129

Query: 186 LDPND 190
              +D
Sbjct: 130 TLADD 134

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 89  AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-------YCNRAASNNKLKNYKL 141
           AE    LG  A  +       +   +A+   +   +            + +  +  +   
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170
           AL   +  +++DP + +A G +      M
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLKYFEYIM 93

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 11/128 (8%)

Query: 87  IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-----YCNRAASNNKLKNYKL 141
           + AE        A+    P++A      A++       Y             +       
Sbjct: 10  MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 69

Query: 142 ALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
           +L   Q   ++        +   +  +           + A E   KA +L     L   
Sbjct: 70  SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 129

Query: 196 NMQAAMSN 203
            M   +  
Sbjct: 130 PMHEFLVR 137

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 114 KAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP-----HYAKAYGRMGLAYT 168
           K I  D  +  +   RA       N   A R  ++A++  P         A   +G    
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
              +   +L    +  ++     ++   + + +
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 13/138 (9%)

Query: 88  EAEKYKNLGNTAMQQDKPEQAV-------IEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
               Y               AV         ++            +       N L +Y 
Sbjct: 76  AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135

Query: 141 LALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
            A+   ++A +            K + +          Y  A + Y+K  +    + L  
Sbjct: 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195

Query: 195 NNMQAAMSNLNNSSSASG 212
            +++           A+ 
Sbjct: 196 WSLKDYFLKKGLCQLAAT 213

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 14/111 (12%)

Query: 92  YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA-- 149
           +    +      +  +A   YSK I     N +   +      K    +LA  D   A  
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220

Query: 150 -----IKIDPHYA-----KAYGRMGLAYTQMN--DYKAALEAYTKAAELDP 188
                   DP++A          +  A  + +        + +     LD 
Sbjct: 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
            K    +G    +  D+  A + + KA +L  N   +
Sbjct: 2   PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCF 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.87
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.77
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.58
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.31
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.24
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.08
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.07
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.03
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.95
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.76
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.55
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.48
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.15
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.24
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.51
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.29
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.38
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.21

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=174.98  Aligned_cols=211  Identities=16%  Similarity=0.127  Sum_probs=180.7

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      |......+.+++|+.+++++++.+|++ ......++.++...+... +....    .+.....+..+..+..+|.++...
T Consensus       176 ~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~  250 (388)
T d1w3ba_         176 GCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAY----LRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             cccccccCcHHHHHHHHHHHHHhCccc-HHHHHHHhhhhhccccHHHHHHHH----HHhHHHhhhHHHHHHHHHHHHHHC
Confidence            334456889999999999999999954 223445555665554332 22211    112334556678899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      |++++|+..|+++++++|+++.++.++|.++...|++.+|+..+++++...|.+...+..+|.++...|++++|+..|++
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  330 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      +++++|+++.++.++|.++..+|++++|+      ..+.++++..|.+++.+..++.++..++
T Consensus       331 al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         331 ALEVFPEFAAAHSNLASVLQQQGKLQEAL------MHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHTTTCCHHHH------HHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999      8899999999999999999998876543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.5e-22  Score=169.20  Aligned_cols=201  Identities=14%  Similarity=0.065  Sum_probs=166.4

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhh-hhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEV-LQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      |......|++++|+.+|+++++.+|++ ...+..++.++...++... ....    .++...+|.+...+..+|.++...
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~----~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISAL----RRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHH----Hhhhcccccccccccccccccccc
Confidence            445567899999999999999999955 2345566777776664332 2221    223456677889999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC---------------------------------------------------CHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNS---------------------------------------------------NPVYYCNRAA  131 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~---------------------------------------------------~~~~~~~la~  131 (314)
                      |++++|+..|++++..+|.                                                   ++.++..+|.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            9999999988887766554                                                   2356788999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++...|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  260 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV  260 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchHHHHHHhccCChHHHH
Q psy4130         212 GSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                            ..+..++...+.++..+.
T Consensus       261 ------~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         261 ------EHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             ------HHHHHHHHHHHTC-----
T ss_pred             ------HHHHHHHHhCCcChhhhh
Confidence                  888888888888776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-21  Score=165.46  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=94.4

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCch--hhHHHHHHHhch--hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASN--VDIESLFQLYYK--DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~--~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      ...+.+++|+++++++++++|   .+..  ...+.++...+.  .++..+.    .++...+|....+|..+|.++...|
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP---~~~~a~~~r~~~l~~l~~~~~eal~~~----~~al~~~p~~~~a~~~~~~~~~~l~  126 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNA---ANYTVWHFRRVLLKSLQKDLHEEMNYI----TAIIEEQPKNYQVWHHRRVLVEWLR  126 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HhCCchHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHhCcCHHHHHHHH----HHHHHHHHhhhhHHHHHhHHHHhhc
Confidence            347889999999999999999   4422  222223333221  1222211    1223344555555555555555555


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------HHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND------YKAAL  177 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------~~~A~  177 (314)
                      ++++|+..|+++++++|.+..+|.++|.++...+++++|+.+++++++++|.+..+|.++|.++...+.      +++|+
T Consensus       127 ~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai  206 (315)
T d2h6fa1         127 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV  206 (315)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence            555555555555555555555555555555555555555555555555555555555555555555443      34555


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         178 EAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       178 ~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      ..+.++++++|++..+|..++.++..
T Consensus       207 ~~~~~al~~~P~~~~~~~~l~~ll~~  232 (315)
T d2h6fa1         207 QYTLEMIKLVPHNESAWNYLKGILQD  232 (315)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHh
Confidence            55555555555555555555555433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-20  Score=135.48  Aligned_cols=113  Identities=27%  Similarity=0.446  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      .-+...|+.++..|+|++|+..|+++++.+|.++.+|.++|.+|..+|++++|+..+.++++++|+++.+|+++|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMS  202 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  202 (314)
                      +|++++|+..|+++++++|+++.++..++.+..
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.8e-19  Score=136.01  Aligned_cols=120  Identities=28%  Similarity=0.403  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL  165 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  165 (314)
                      -..+..+...|+.+++.|+|++|+.+|+++++++|+++.+|.++|.|+..+|++++|+.+|+++++++|+++.+|+.+|.
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      ++..+|++++|+.+|++++.++|+++.++..++.+....+
T Consensus        87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          87 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888865443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.8e-19  Score=150.71  Aligned_cols=156  Identities=11%  Similarity=0.060  Sum_probs=134.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYG  161 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~  161 (314)
                      ..+|...+++..+|.++.+.+.+++|+..++++|+++|.+..+|.++|.++...+ ++++|+.+++++++++|++..+|.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3467888888888888888888899999999999999999999999998888876 488899999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      .+|.++..+|++++|+..++++++++|++..+|.++|.++..++++++|+      ..+..+++.-+.+...|..++.++
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al------~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL------QYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHCCccHHHHHHHHHHH
Confidence            99999999999999999999999999999889999999999999998888      888888888888888888777776


Q ss_pred             cCC
Q psy4130         242 ANP  244 (314)
Q Consensus       242 ~~~  244 (314)
                      ...
T Consensus       191 ~~~  193 (315)
T d2h6fa1         191 SNT  193 (315)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-20  Score=162.95  Aligned_cols=178  Identities=17%  Similarity=0.146  Sum_probs=152.4

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      |......+++++|+..|++++..+|.. ......++.++...+.. .+....    .+....+|.++.++..+|.++...
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTY----RRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhhhH-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHc
Confidence            334456889999999999999999843 22334456666655543 222222    222345667788999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK  182 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  182 (314)
                      |++++|+..|++++...|.+...+..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|++
T Consensus       285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130         183 AAELDPNDPLYANNMQAAMSNLNN  206 (314)
Q Consensus       183 al~~~p~~~~~~~~l~~~~~~~~~  206 (314)
                      +++++|+++.++.++|.++.++|+
T Consensus       365 al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         365 AIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.2e-18  Score=141.89  Aligned_cols=144  Identities=17%  Similarity=0.100  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      ++..+.+++.+|.+|...|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+++.+|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130         165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ  235 (314)
Q Consensus       165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~  235 (314)
                      .++..+|++++|+..|+++++.+|++......++.++...+....+       ..+..........+..+.
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  176 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK-------EVLKQHFEKSDKEQWGWN  176 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHH-------HHHHHHHHHSCCCSTHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHH-------HHHHHHhhccchhhhhhh
Confidence            9999999999999999999999999999988888888887765554       344444444444443333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.78  E-value=8.5e-18  Score=127.47  Aligned_cols=125  Identities=27%  Similarity=0.322  Sum_probs=113.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHccCHHHHHHHH
Q psy4130          83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------VYYCNRAASNNKLKNYKLALRDC  146 (314)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~  146 (314)
                      ......+..+...|+.++..|+|.+|+..|++++...+...                .++.|+|.||.++|++++|+.++
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            34456677899999999999999999999999998765432                46889999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130         147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS  207 (314)
Q Consensus       147 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  207 (314)
                      ++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+..++++.
T Consensus        91 ~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          91 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998877643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=5.9e-19  Score=139.87  Aligned_cols=103  Identities=29%  Similarity=0.381  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      +..+...|+.++..|+|++|+..|++++.++|.++.+|.++|.||...|++++|+.+|++|++++|+++.+|+++|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH
Q psy4130         169 QMNDYKAALEAYTKAAELDPNDP  191 (314)
Q Consensus       169 ~~g~~~~A~~~~~~al~~~p~~~  191 (314)
                      .+|++++|+..|++++.++|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999988644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-17  Score=129.36  Aligned_cols=125  Identities=21%  Similarity=0.306  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---------------PVYYCNRAASNNKLKNYKLALRDCQIAI  150 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al  150 (314)
                      -..+..+...|+.++..|+|++|+..|++++...|..               ..++.++|.||.++|+|++|+.++++++
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            3457788899999999999999999999999987764               2567899999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130         151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA  210 (314)
Q Consensus       151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  210 (314)
                      .++|+++.+++++|.++..+|++++|+..|+++++++|+++.+...++.+...+++..+.
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887766544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.5e-18  Score=144.05  Aligned_cols=197  Identities=15%  Similarity=0.131  Sum_probs=161.3

Q ss_pred             HHHHHcCCCCCCCC-C--chhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4130          39 CLCKAYDIPDNIDP-A--SNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSK  114 (314)
Q Consensus        39 ~~~~al~~~p~~~~-~--~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  114 (314)
                      .|++++...++++- +  ..+..+..+...++. ++...+    .+.+..+|.++.+|..+|.++...|++++|+..|++
T Consensus         3 ~~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~----~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~   78 (323)
T d1fcha_           3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR   78 (323)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHh
Confidence            46667766664421 1  123445555555533 333322    233456788899999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------------------------
Q psy4130         115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---------------------------------------  155 (314)
Q Consensus       115 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------------------------------  155 (314)
                      +++++|++..+|..+|.+|...|++++|+..+++++..+|.                                       
T Consensus        79 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_          79 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999998888877655443                                       


Q ss_pred             ------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHH
Q psy4130         156 ------------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEM  223 (314)
Q Consensus       156 ------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  223 (314)
                                  ++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+      ..+..+
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~------~~~~~a  232 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV------AAYRRA  232 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHH
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH------HHHHHH
Confidence                        34567889999999999999999999999999999999999999999999999999      889999


Q ss_pred             HHhccCChHHHHHHHHhhcCCC
Q psy4130         224 STKVLSDPSIQQVFGELFANPG  245 (314)
Q Consensus       224 ~~~~~~~p~~~~~l~~~~~~~~  245 (314)
                      .+.-+.+++.+..++.++...+
T Consensus       233 l~~~p~~~~a~~~lg~~~~~~g  254 (323)
T d1fcha_         233 LELQPGYIRSRYNLGISCINLG  254 (323)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHhhccHHHHHHHHHHHHHCC
Confidence            9988999999999998877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.2e-17  Score=128.84  Aligned_cols=124  Identities=24%  Similarity=0.371  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----------------DNSNPVYYCNRAASNNKLKNYKLALRDCQIA  149 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  149 (314)
                      ...+..+...|..++..|+|.+|+..|++++..                +|....++.++|.|+.++|+|++|+..|.++
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            344566788999999999999999999999864                3456678999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       150 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      ++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...+..+...+....+
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999887765544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-16  Score=125.94  Aligned_cols=142  Identities=18%  Similarity=0.136  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      ..++..|..+...|+|++|++.|++   ..|.++.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++|.++..
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            3566789999999999999999986   4667889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC--Ch
Q psy4130         170 MNDYKAALEAYTKAAELDPND----------------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS--DP  231 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~p  231 (314)
                      +|++++|+..|++++...|.+                ..+++++|.++..+|++++|.      ..+..+....+.  +.
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~------~~l~~A~~~~~~~~~~  156 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE------EQLALATSMKSEPRHS  156 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCCSGGGG
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH------HHHHHHHhcCCCcchH
Confidence            999999999999999876643                367899999999999999997      665555544443  23


Q ss_pred             HHHHHHHHh
Q psy4130         232 SIQQVFGEL  240 (314)
Q Consensus       232 ~~~~~l~~~  240 (314)
                      .+...+..+
T Consensus       157 ~~~~Al~~~  165 (192)
T d1hh8a_         157 KIDKAMECV  165 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444445544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.74  E-value=4.3e-17  Score=125.54  Aligned_cols=126  Identities=24%  Similarity=0.283  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---------------PVYYCNRAASNNKLKNYKLALRDCQI  148 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~  148 (314)
                      .....+..+...|+.++..|+|.+|+..|++++...|..               ..++.++|.||..+|++++|+.++++
T Consensus        10 E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~   89 (168)
T d1kt1a1          10 EKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK   89 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhh
Confidence            344667889999999999999999999999999864432               25688999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       149 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      ++.++|.++.+++++|.++..+|++++|+..|.+++.++|+++.++..++.+...++++.+
T Consensus        90 al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          90 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999999999999999999888776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.2e-17  Score=129.07  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=121.5

Q ss_pred             ccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130          22 RDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ  101 (314)
Q Consensus        22 ~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  101 (314)
                      +.|......++++.|+++|.++   .|   .+                                   +.+|+++|.++..
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~~---~~-----------------------------------~~~~~nlG~~~~~   48 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---QD---PH-----------------------------------SRICFNIGCMYTI   48 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---SS---CC-----------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---CC---CC-----------------------------------HHHHHHHHHHHHH
Confidence            3455667899999999999864   23   11                                   2468999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----------------HHHHHHHHH
Q psy4130         102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----------------AKAYGRMGL  165 (314)
Q Consensus       102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~  165 (314)
                      .|++++|+.+|+++++++|+++.+|+++|.++.++|++++|+.+|++++...|.+                ..+++++|.
T Consensus        49 ~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          49 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875543                478899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      ++..+|++++|++.|.+++.+.|+........+......+...+
T Consensus       129 ~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~~~~~  172 (192)
T d1hh8a_         129 MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE  172 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTTCCCC
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhhhCC
Confidence            99999999999999999999999865444444444444333333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=6.6e-18  Score=138.93  Aligned_cols=137  Identities=15%  Similarity=0.034  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY  167 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  167 (314)
                      ++.+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..++++++.+|.+...+..++.++
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  149 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE  149 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999998877777776


Q ss_pred             HHcCCHHHHHHHHHHHH------------------------------------hhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         168 TQMNDYKAALEAYTKAA------------------------------------ELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al------------------------------------~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ...+..+.+........                                    ...|....+++++|.++...|++++|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  229 (259)
T d1xnfa_         150 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT  229 (259)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHH
Confidence            66554443333333222                                    223334457788999999999999997


Q ss_pred             CCCCCcchHHHHHHhccCC
Q psy4130         212 GSGGVFPGLSEMSTKVLSD  230 (314)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~  230 (314)
                            ..+..++...|.+
T Consensus       230 ------~~~~~al~~~p~~  242 (259)
T d1xnfa_         230 ------ALFKLAVANNVHN  242 (259)
T ss_dssp             ------HHHHHHHTTCCTT
T ss_pred             ------HHHHHHHHcCCCC
Confidence                  6666666554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-17  Score=118.77  Aligned_cols=113  Identities=5%  Similarity=-0.009  Sum_probs=102.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Q psy4130          93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL---KNYKLALRDCQIAIKIDPHY--AKAYGRMGLAY  167 (314)
Q Consensus        93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~  167 (314)
                      ..+++.+...+++++|.+.|++++.++|.++.+++++|.++.+.   +++.+|+..|++++..+|.+  ..+|+++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999864   56678999999999998765  46899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      ..+|++++|+.+|+++++++|++..+...++.+..+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999998877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.2e-17  Score=115.91  Aligned_cols=110  Identities=24%  Similarity=0.257  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      +...|..++..|+|++|+.+|+++++.+|.++.+|..+|.++..+|++++|+..|.++++++|+++.+|+++|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         206 NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       206 ~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ++++|+      ..+..+.+..|.+|+++..++++.
T Consensus        86 ~~~~A~------~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAK------RTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHH------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHH------HHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999      999999999999999998888764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.2e-16  Score=114.89  Aligned_cols=114  Identities=31%  Similarity=0.409  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-------HHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-------KAY  160 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  160 (314)
                      .+..+..+|+.++..|+|++|+.+|++++.++|.++.++.++|.||..+|+|++|+.+++++++++|.+.       .++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999998764       577


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS  202 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  202 (314)
                      ..+|.++..++++++|+.+|++++..+|. ++....+..+..
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k  123 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK  123 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            78889999999999999999999999875 566666655543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.70  E-value=1.5e-16  Score=113.82  Aligned_cols=94  Identities=12%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM  170 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  170 (314)
                      .++.+|.++++.|++++|+..|++++..+|+++.+|..+|.++...+++++|+.+++++++++|+++.+|+.+|.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy4130         171 NDYKAALEAYTKAA  184 (314)
Q Consensus       171 g~~~~A~~~~~~al  184 (314)
                      |++++|++.+++.|
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=1.8e-16  Score=118.83  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL----------KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      +.+.+.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+|+++|.++.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45567799999999999999999999999999999854          55689999999999999999999999999998


Q ss_pred             HcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130         169 QMND-----------YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS  209 (314)
Q Consensus       169 ~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  209 (314)
                      .+|+           +++|+.+|+++++++|++..++..|+.+....+.+.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8764           7999999999999999999999999999766655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-15  Score=115.72  Aligned_cols=111  Identities=24%  Similarity=0.198  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      ..+...|..+++.|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       204 ~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +|++++|.      ..+..+....|.+++++..+..+
T Consensus        91 ~g~~~eA~------~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          91 LGKFRAAL------RDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             TTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cCCHHHHH------HHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999      99999999999999988776655

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-14  Score=112.02  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=107.8

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |......+++++|+.+|++++...|.........                       ...........+.++|.+|++.|
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~nla~~y~k~~   76 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-----------------------AQKAQALRLASHLNLAMCHLKLQ   76 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-----------------------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH-----------------------HhhhchhHHHHHHHHHHHHHhhh
Confidence            3345568999999999999999888442221100                       01122333457888999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      +|++|+..+++++.++|.++.+++.+|.||..+|++++|+.+|+++++++|+++.+...++.+....+...+..
T Consensus        77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988777666543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=4.8e-15  Score=105.78  Aligned_cols=87  Identities=22%  Similarity=0.215  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130         125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL  204 (314)
Q Consensus       125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  204 (314)
                      .++.+|.++.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..++..+|.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC
Q psy4130         205 NNSSSAS  211 (314)
Q Consensus       205 ~~~~~A~  211 (314)
                      |++++|.
T Consensus        98 g~~~~A~  104 (112)
T d1hxia_          98 HNANAAL  104 (112)
T ss_dssp             HHHHHHH
T ss_pred             CCHHHHH
Confidence            9999997

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.2e-13  Score=117.70  Aligned_cols=184  Identities=8%  Similarity=-0.052  Sum_probs=140.6

Q ss_pred             cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy4130          32 GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIE  111 (314)
Q Consensus        32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  111 (314)
                      ..++|+++++++++.+|   ++...+...                         ......+...+..+...+.+++|+.+
T Consensus        44 ~~~~al~~~~~~l~~~P---~~~~a~~~r-------------------------~~~l~~l~~~~~~~~~~~~~~~al~~   95 (334)
T d1dcea1          44 LDESVLELTSQILGANP---DFATLWNCR-------------------------REVLQHLETEKSPEESAALVKAELGF   95 (334)
T ss_dssp             CSHHHHHHHHHHHHHCT---TCHHHHHHH-------------------------HHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCC---CcHHHHHHH-------------------------HHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            34899999999999999   443211100                         00111233334455667788999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130         112 YSKAIDCDNSNPVYYCNRAASNNKLKN--YKLALRDCQIAIKIDPHYAKAY-GRMGLAYTQMNDYKAALEAYTKAAELDP  188 (314)
Q Consensus       112 ~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p  188 (314)
                      |+++++.+|.++.+|+.+|.++...++  +++|+..+.+++.++|.+..++ ..+|.++...+.+++|+..+++++.++|
T Consensus        96 ~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1          96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            999999999999999999999988764  8999999999999999999886 5678899999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcccccCCCCCCCc--------chHHHHHHhccCChHHHHHHHHhhcC
Q psy4130         189 NDPLYANNMQAAMSNLNNSSSASGSGGVF--------PGLSEMSTKVLSDPSIQQVFGELFAN  243 (314)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~p~~~~~l~~~~~~  243 (314)
                      ++..+|.+++.++..+|++++|.......        ..+.......+.+...+.....+...
T Consensus       176 ~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            99999999999999999999998555444        11122233334455555555544444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=5.1e-15  Score=116.65  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=94.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130         122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM  201 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  201 (314)
                      ++..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|..+|++++|+.+|+++++++|++..+|.++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130         202 SNLNNSSSASGSGGVFPGLSEMSTKVLS  229 (314)
Q Consensus       202 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~  229 (314)
                      ..+|++++|.      ..+..+....|.
T Consensus        83 ~~l~~~~~A~------~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMESYDEAI------ANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTCHHHHH------HHHHHHHHHHHH
T ss_pred             HHCCCHHHHH------HHHHHHHHhCcc
Confidence            9999999998      777766665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.58  E-value=1.7e-14  Score=110.75  Aligned_cols=139  Identities=13%  Similarity=0.058  Sum_probs=111.1

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ  102 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  102 (314)
                      .|......|++++|+.+|++++...|.......-               .        .....+.....+.++|.+++..
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~---------------~--------~~~~~~~~~~~~~Nla~~~~~l   77 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK---------------E--------SKASESFLLAAFLNLAMCYLKL   77 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH---------------H--------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh---------------h--------hhhcchhHHHHHHhHHHHHHHh
Confidence            3455567999999999999999877633221110               0        0122334566788999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA-ALEAYT  181 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~  181 (314)
                      ++|++|+..+++++.++|.+..+|+++|.+|..+|++++|+.+|.+++.++|++..++..++.+....+.+.+ ..+.|.
T Consensus        78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~  157 (168)
T d1kt1a1          78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA  157 (168)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999877776543 344444


Q ss_pred             HHH
Q psy4130         182 KAA  184 (314)
Q Consensus       182 ~al  184 (314)
                      +.+
T Consensus       158 ~~f  160 (168)
T d1kt1a1         158 NMF  160 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=1.2e-14  Score=111.76  Aligned_cols=132  Identities=18%  Similarity=0.133  Sum_probs=108.4

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD  103 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  103 (314)
                      |......+++++|++.|+++++..+   ....         .....          ......|.....+.++|.++.+.|
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~---~~~~---------~~~~~----------~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVE---GSRA---------AAEDA----------DGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH---HHHH---------HSCHH----------HHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhh---hhhh---------hhhhH----------HHHHhChhhHHHHHHHHHHHHhhc
Confidence            3345568899999999999987554   1100         00000          002346778889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130         104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL  177 (314)
Q Consensus       104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  177 (314)
                      +|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+........++.
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887776665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.2e-16  Score=133.22  Aligned_cols=207  Identities=9%  Similarity=-0.108  Sum_probs=159.5

Q ss_pred             cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchh--hHHHHHHHhch---hhhhhhhccCCCCCChhhHHHHHHH-HH
Q psy4130          21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNV--DIESLFQLYYK---DEVLQWYSNINFSPTEEVKIEAEKY-KN   94 (314)
Q Consensus        21 ~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~--~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~   94 (314)
                      ...+......+.+++|+.+|+++++.+|   .+...  ..+.++.....   .++...    ..+....+|.....+ ..
T Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~l~~~p---k~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~al~~~~~~~~~~~~~  149 (334)
T d1dcea1          77 ETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRCWLLSRLPEPNWARELEL----CARFLEADERNFHCWDYR  149 (334)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTCSSCCHHHHHHH----HHHHHHHCTTCHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHhCC---CcHHHHHHhhHHHHHhccccHHHHHHH----HHHHHhhCchhhhhhhhH
Confidence            3445556678889999999999999999   55443  33444433332   122211    122234455556665 57


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHH------------------------------HHHH
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK------------------------------LALR  144 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~------------------------------~A~~  144 (314)
                      .|.++...+.+++|+..+++++..+|.+..+|+++|.++..+|+++                              ++..
T Consensus       150 ~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~  229 (334)
T d1dcea1         150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW  229 (334)
T ss_dssp             HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHH
Confidence            7899999999999999999999999999999999999999988764                              3444


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130         145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS  224 (314)
Q Consensus       145 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  224 (314)
                      .+.+++..+|.+...+..+|.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+      ..+..+.
T Consensus       230 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~------~~~~~ai  303 (334)
T d1dcea1         230 FYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL------QYFSTLK  303 (334)
T ss_dssp             HHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH------HHHHHHH
T ss_pred             HHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHH------HHHHHHH
Confidence            5566666667767777788999999999999999999999999999999999999999999999998      8888887


Q ss_pred             HhccCChHHHHHHHHh
Q psy4130         225 TKVLSDPSIQQVFGEL  240 (314)
Q Consensus       225 ~~~~~~p~~~~~l~~~  240 (314)
                      +.-|.++..|..+...
T Consensus       304 ~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         304 AVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHCGGGHHHHHHHHHH
T ss_pred             HHCcccHHHHHHHHHH
Confidence            7777666777666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.55  E-value=1.3e-14  Score=109.57  Aligned_cols=124  Identities=15%  Similarity=0.085  Sum_probs=101.5

Q ss_pred             CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130          26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP  105 (314)
Q Consensus        26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  105 (314)
                      .....|++++|+.+|++++...|..........              .        ....+.....+.++|.+|++.|++
T Consensus        26 ~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~--------------~--------~~~~~~~~~~~~Nla~~~~~l~~~   83 (153)
T d2fbna1          26 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL--------------L--------DKKKNIEISCNLNLATCYNKNKDY   83 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH--------------H--------HHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHH--------------H--------HhhhhHHHHHHhhHHHHHHHhccc
Confidence            344689999999999999988774322211000              0        011223345788999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130         106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN  171 (314)
Q Consensus       106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  171 (314)
                      ++|+.+|+++++++|.+..+|+++|.+|..+|++++|+.+|+++++++|++..+...++.+..+++
T Consensus        84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=2e-14  Score=107.38  Aligned_cols=115  Identities=11%  Similarity=0.084  Sum_probs=92.4

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH---
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM---  100 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---  100 (314)
                      +-.++..+.+++|+.+|+++++++|   .++.                                   +++.+|.++.   
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P---~~~~-----------------------------------~~~~~g~~l~~~~   45 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNP---LDAD-----------------------------------NLTRWGGVLLELS   45 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCT---TCHH-----------------------------------HHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCC---cchH-----------------------------------HHHHHHHHHHHhh
Confidence            3355678899999999999999999   4422                                   3444444433   


Q ss_pred             -------hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130         101 -------QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-----------NYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus       101 -------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                             ..+.+++|+..|+++++++|+++.+|+++|.+|..+|           .|++|+.+|++++.++|++..++..
T Consensus        46 ~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~  125 (145)
T d1zu2a1          46 QFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  125 (145)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHH
Confidence                   2345689999999999999999999999999998876           4799999999999999999999999


Q ss_pred             HHHHHHHcCCHHHH
Q psy4130         163 MGLAYTQMNDYKAA  176 (314)
Q Consensus       163 lg~~~~~~g~~~~A  176 (314)
                      |+.+....+.+.++
T Consensus       126 L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         126 LEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99886555444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.49  E-value=1.6e-13  Score=103.82  Aligned_cols=100  Identities=13%  Similarity=0.133  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Q psy4130          91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---  155 (314)
Q Consensus        91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---  155 (314)
                      .+...|..++..|+|++|+..|++++.++|..            +.+|.++|.+|..+|+|++|+.++++++.+.|.   
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence            34445889999999999999999999988764            357899999999999999999999999987542   


Q ss_pred             --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130         156 --------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND  190 (314)
Q Consensus       156 --------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  190 (314)
                              ...+++++|.++..+|++++|+..|++++++.|+.
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                    24578999999999999999999999999996643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=123.45  Aligned_cols=129  Identities=14%  Similarity=0.057  Sum_probs=92.1

Q ss_pred             CChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130          81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY  160 (314)
Q Consensus        81 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  160 (314)
                      ....++.....+..+|..+...+++++|+..+++++..+|  ..++.++|.++...+++++|+.+|++|+.++|+++.+|
T Consensus       112 ~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~  189 (497)
T d1ya0a1         112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPY  189 (497)
T ss_dssp             -------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHH
T ss_pred             HHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHH
Confidence            3455677888999999999999999999999999998876  46789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      ++||.++...|++.+|+.+|.+++..+|..+.++.+|+.++.+..+..++.
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~  240 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV  240 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh
Confidence            999999999999999999999999999999999999999999888777665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.9e-13  Score=92.58  Aligned_cols=77  Identities=14%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130          90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN-------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR  162 (314)
Q Consensus        90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  162 (314)
                      +.++.+|.++++.|+|++|+.+|++++++.|.+       ..++.++|.++.+.|++++|+.+++++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            345666666666666666666666666654332       3455555555555555555555555555555555555555


Q ss_pred             HHHH
Q psy4130         163 MGLA  166 (314)
Q Consensus       163 lg~~  166 (314)
                      ++.+
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=100.61  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHH
Q psy4130         124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-------YANN  196 (314)
Q Consensus       124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~  196 (314)
                      ..+.++|.+++..|+|++|+.+|+++++++|+++.++.++|.++..+|+|++|+..|+++++++|++..       ++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999998765       4555


Q ss_pred             HHHHHHHhcccccCC
Q psy4130         197 MQAAMSNLNNSSSAS  211 (314)
Q Consensus       197 l~~~~~~~~~~~~A~  211 (314)
                      +|.++..++++++|+
T Consensus        85 lg~~~~~~~~~~~A~   99 (128)
T d1elra_          85 IGNSYFKEEKYKDAI   99 (128)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCCHHHHH
Confidence            566666666666665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.7e-13  Score=91.32  Aligned_cols=83  Identities=16%  Similarity=0.021  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN  195 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  195 (314)
                      ++-++.+|.++.+.|+|.+|+.+|++|+++.|.+       +.++.++|.++..+|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4567899999999999999999999999986543       688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy4130         196 NMQAAMSNLN  205 (314)
Q Consensus       196 ~l~~~~~~~~  205 (314)
                      +++.+...++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9998877654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=123.86  Aligned_cols=142  Identities=12%  Similarity=-0.000  Sum_probs=98.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK  174 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  174 (314)
                      ++......+.|+.|+..|++++.++|.+...+.++|.++.+.+++++|+..+.+++..+|  ..++.++|.++...++++
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHH
Confidence            455566678899999999999999999999999999999999999999999999998876  468899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130         175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP  244 (314)
Q Consensus       175 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  244 (314)
                      +|+.+|++|++++|++..++.+||.++...|++.+|+      ..+..+....+..|..+..+..++...
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~------~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI------FYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH------HHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH------HHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998      888888888888888888887776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=4.3e-13  Score=111.99  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC--
Q psy4130          85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNK-LKNYKLALRDCQIAIKIDPH--  155 (314)
Q Consensus        85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~--  155 (314)
                      .+..+..|..+|.+|...|++++|+..|++++.+.+..      ..++.++|.+|.. .|++++|+.+|++++.+.+.  
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999999976554      5678889988865 69999999999999987432  


Q ss_pred             ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcccccCC
Q psy4130         156 ----YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-------LYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       156 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~  211 (314)
                          ...++.++|.++..+|+|++|+..|++++...|.+.       ..+...+.++...+++..|.
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~  219 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHH
Confidence                246789999999999999999999999999988764       45678888888999998885

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=5.1e-12  Score=106.25  Aligned_cols=206  Identities=13%  Similarity=0.038  Sum_probs=158.8

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhchh--------hh---hhhhccCCCCCCh-hhHHHHHHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYYKD--------EV---LQWYSNINFSPTE-EVKIEAEKYKN   94 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~~~--------~~---~~~~~~~~~~~~~-~~~~~~~~~~~   94 (314)
                      .....++++..|++|+...|   ..+.+++..  +.......        ..   ......++.+++. ..|.....|..
T Consensus        28 ~~~~~~Rv~~vyerAl~~~~---~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~  104 (308)
T d2onda1          28 QTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA  104 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34456788899999999999   555555543  21111100        00   0000001111111 23445668899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCC
Q psy4130          95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNP-VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT-QMND  172 (314)
Q Consensus        95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~  172 (314)
                      .+......|+++.|...|++++...|.+. .+|...+......++++.|...|.++++..|.+...|...+.... ..|+
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~  184 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999775 478999999999999999999999999999999999999988754 4689


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH----HHHHHHHhhcC
Q psy4130         173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS----IQQVFGELFAN  243 (314)
Q Consensus       173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~----~~~~l~~~~~~  243 (314)
                      .+.|...|++++..+|+++.+|..++..+...|+.+.|.      ..+..+.+..+.+|+    +|..+..+...
T Consensus       185 ~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR------~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~  253 (308)
T d2onda1         185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR------VLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH------HHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHH------HHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998      888888888877764    67766666443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=94.11  Aligned_cols=109  Identities=5%  Similarity=-0.076  Sum_probs=96.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q psy4130         127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTKAAELDPND--PLYANNMQAAM  201 (314)
Q Consensus       127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~  201 (314)
                      .+++..+...+++++|++.|++++.++|.++.+++++|.++...+   ++++|+..|++++..+|++  ..+++++|.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            356778889999999999999999999999999999999998754   5567999999999998865  45899999999


Q ss_pred             HHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130         202 SNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF  241 (314)
Q Consensus       202 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~  241 (314)
                      ..+|++++|+      ..+..+++.-|.+++...+...+.
T Consensus        83 ~~~g~~~~A~------~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          83 YRLKEYEKAL------KYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhHHHH------HHHHHHHHhCcCCHHHHHHHHHHH
Confidence            9999999999      999999999999998877776553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.4e-11  Score=103.51  Aligned_cols=197  Identities=11%  Similarity=-0.020  Sum_probs=149.2

Q ss_pred             cCCCcchhhcHHHHHHHHHHHcCC-CCCCCCCchhhH--HHHHHHhchhhhh-hhhccCCCCCChhhHH-HHHHHHHHHH
Q psy4130          23 DTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDI--ESLFQLYYKDEVL-QWYSNINFSPTEEVKI-EAEKYKNLGN   97 (314)
Q Consensus        23 ~~~~~~~~~~~~~Ai~~~~~al~~-~p~~~~~~~~~l--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~g~   97 (314)
                      .+......+..++|...|+++++. .|   .+..++.  +.+....+..+.. ..+...    ....|. ....|...+.
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~~~p---~~~~l~~~ya~~~~~~~~~~~a~~i~~~~----l~~~~~~~~~~w~~~~~  142 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYADYEESRMKYEKVHSIYNRL----LAIEDIDPTLVYIQYMK  142 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTSSSSCTHHHHHHHHH
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcccHHHHHHHHHHH----HHHhcCChHHHHHHHHH
Confidence            344455677789999999999985 55   4433333  3344443332221 111111    111222 2346888899


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy4130          98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA  176 (314)
Q Consensus        98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  176 (314)
                      ...+.++++.|...|+++++..|.+...|...|.... ..|+.+.|...|++++..+|+++..|...+..+...|+++.|
T Consensus       143 ~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         143 FARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHH
Confidence            9999999999999999999999999999999888754 468999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130         177 LEAYTKAAELDPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS  232 (314)
Q Consensus       177 ~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~  232 (314)
                      +..|++++...|.+    ..+|..........|+.+.+.      .....+.+..+.+++
T Consensus       223 R~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~------~~~~r~~~~~~~~~~  276 (308)
T d2onda1         223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL------KVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHCccccc
Confidence            99999999987754    457888888888899998886      555566666666643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=4.4e-12  Score=105.73  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---
Q psy4130          86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---  156 (314)
Q Consensus        86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  156 (314)
                      ..-++.|...|++|...++|++|+++|++++.+.      +....+|.++|.||..+|++++|+.++++++.+.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            3446789999999999999999999999999973      2234689999999999999999999999999986554   


Q ss_pred             ---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130         157 ---AKAYGRMGLAYTQ-MNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK  226 (314)
Q Consensus       157 ---~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  226 (314)
                         ..++..+|.++.. .|++++|+..|++++++.+.      ...++.+++.++..+|++++|.      ..+..+...
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~------~~~~~~~~~  187 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS------DIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHT
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH------HHHHHHHHh
Confidence               5788899998865 69999999999999987543      2456899999999999999998      777777776


Q ss_pred             ccCCh
Q psy4130         227 VLSDP  231 (314)
Q Consensus       227 ~~~~p  231 (314)
                      .+.++
T Consensus       188 ~~~~~  192 (290)
T d1qqea_         188 SMGNR  192 (290)
T ss_dssp             TSSCT
T ss_pred             Cccch
Confidence            66654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.27  E-value=7.8e-12  Score=94.25  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=85.2

Q ss_pred             cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130          27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE  106 (314)
Q Consensus        27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  106 (314)
                      ....|++++|+..|++++++.|+.++...                          ....+..+..|.++|.++...|+|+
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~--------------------------~~~~~~~a~~~~nlg~~~~~lg~~~   72 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEA--------------------------FDHAGFDAFCHAGLAEALAGLRSFD   72 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSC--------------------------CCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhh--------------------------cccchhHHHHHHHHHHHHHHcCccc
Confidence            34579999999999999999995533311                          2334556778999999999999999


Q ss_pred             HHHHHHHHHHHcCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130         107 QAVIEYSKAIDCDNS-----------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH  155 (314)
Q Consensus       107 ~A~~~~~~al~~~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  155 (314)
                      +|+..+++++++.|.           ...+++++|.+|..+|++++|+.+|++++++.|.
T Consensus        73 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          73 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999987542           2347899999999999999999999999998654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=1.3e-10  Score=89.32  Aligned_cols=101  Identities=16%  Similarity=0.029  Sum_probs=91.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------------HHHHHHHHHHHHccCHHH
Q psy4130          84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------------VYYCNRAASNNKLKNYKL  141 (314)
Q Consensus        84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~~~~~~~~~~~  141 (314)
                      .+......+...|..+...|++++|+..|.+++.+.+...                      .++.+++.++...|++++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            3556678899999999999999999999999999876532                      568899999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130         142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA  184 (314)
Q Consensus       142 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  184 (314)
                      |+.++++++.++|.+..+|..++.++...|++.+|+..|+++.
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999873

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.16  E-value=1.4e-11  Score=100.87  Aligned_cols=133  Identities=10%  Similarity=-0.034  Sum_probs=114.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy4130          96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA  175 (314)
Q Consensus        96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  175 (314)
                      +.-.+..|++++|+..|+++++.+|.++.++..++.+|...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130         176 ALEAYTKAAE-LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ  234 (314)
Q Consensus       176 A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~  234 (314)
                      +...+.+... .+|.....+...+.++...|+.++|.      ..+..+.+..+..|..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~------~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS------ELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHCCCCCEEE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhcCCCCCccc
Confidence            7665554333 34556667788889999999999998      77777777777777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=3.8e-09  Score=88.61  Aligned_cols=151  Identities=7%  Similarity=-0.124  Sum_probs=124.6

Q ss_pred             chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130          28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ  107 (314)
Q Consensus        28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  107 (314)
                      ...|++++|+++|+++++..|   .+..                              +....++..+|.++...|++++
T Consensus        23 ~~~g~~~~A~~~~~~aL~~~~---~~~~------------------------------~~~~~a~~~lg~~~~~~g~~~~   69 (366)
T d1hz4a_          23 INDGNPDEAERLAKLALEELP---PGWF------------------------------YSRIVATSVLGEVLHCKGELTR   69 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCC---TTCH------------------------------HHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCc---CCCc------------------------------HHHHHHHHHHHHHHHHCCCHHH
Confidence            458999999999999999999   3311                              2335578899999999999999


Q ss_pred             HHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCH
Q psy4130         108 AVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--------YAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus       108 A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~  173 (314)
                      |+..|++++...+..      ..++.+++.++...|++..|...+.+++.+.+.        ....+..+|.++...|++
T Consensus        70 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  149 (366)
T d1hz4a_          70 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL  149 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence            999999999875432      356788999999999999999999999976422        235778899999999999


Q ss_pred             HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcccccCC
Q psy4130         174 KAALEAYTKAAELDPND-----PLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       174 ~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.|...+.+++...+..     ..++...+.++...+++.++.
T Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  192 (366)
T d1hz4a_         150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR  192 (366)
T ss_dssp             HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999987653     456777888888888888775

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=7.7e-10  Score=93.01  Aligned_cols=130  Identities=12%  Similarity=-0.045  Sum_probs=111.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130          82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY  156 (314)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  156 (314)
                      ...++..++.....|.++...|++++|+..|++++...|.+.     .++..+|.++...|++++|+..|++++.+.+..
T Consensus         5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            345666788888999999999999999999999999999863     478899999999999999999999999875432


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcccccCC
Q psy4130         157 ------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--------DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       157 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                            ..++..++.++...|++..|...+.+++.+.+.        ...++..++.++...|+++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~  153 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  153 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH
Confidence                  467889999999999999999999999876432        2346778999999999999886

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.03  E-value=1.8e-10  Score=94.12  Aligned_cols=129  Identities=14%  Similarity=-0.050  Sum_probs=112.3

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ..|++++|+..|+++++.+|   .+                                   +..+..+|.+++..|++++|
T Consensus         8 ~~G~l~eAl~~l~~al~~~P---~d-----------------------------------~~ar~~La~lL~~~G~~e~A   49 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASP---KD-----------------------------------ASLRSSFIELLCIDGDFERA   49 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCT---TC-----------------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCC---CC-----------------------------------HHHHHHHHHHHHHCCCHHHH
Confidence            47999999999999999999   44                                   45799999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK-IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD  187 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  187 (314)
                      +..|+++++++|++...+..++.++...+..+++...+.+... .+|.....+...+.++...|++++|+..+.++.++.
T Consensus        50 ~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          50 DEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999888888777666555433 356667888889999999999999999999999999


Q ss_pred             CCCHHHHH
Q psy4130         188 PNDPLYAN  195 (314)
Q Consensus       188 p~~~~~~~  195 (314)
                      |..+..+.
T Consensus       130 p~~~~~~~  137 (264)
T d1zbpa1         130 QEKGFLAN  137 (264)
T ss_dssp             CCCCEEET
T ss_pred             CCCCcccc
Confidence            98766543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=4.2e-09  Score=80.61  Aligned_cols=115  Identities=11%  Similarity=0.010  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----------------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy4130         123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----------------------KAYGRMGLAYTQMNDYKAALEAY  180 (314)
Q Consensus       123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~lg~~~~~~g~~~~A~~~~  180 (314)
                      ...+...|......|++++|+..|.+|+.+.+...                      .++..++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46788899999999999999999999999976432                      56889999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc------CChHHHHHHHHhhcC
Q psy4130         181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL------SDPSIQQVFGELFAN  243 (314)
Q Consensus       181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~p~~~~~l~~~~~~  243 (314)
                      ++++.++|.+..+|..++.++...|++.+|.      ..|..+.+.+.      ..|++..+...++..
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl------~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~  153 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDAL------GAYRRVKTTLADDLGIDPGPTLRALNERILRQ  153 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH------HHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998      77776655432      245666666666544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.84  E-value=2.5e-08  Score=80.99  Aligned_cols=196  Identities=19%  Similarity=0.162  Sum_probs=125.2

Q ss_pred             CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-----hhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130          24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-----EVLQWYSNINFSPTEEVKIEAEKYKNLGNT   98 (314)
Q Consensus        24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   98 (314)
                      |......+++++|+++|+++.+...   ....+.++.+|......     ....+..      .......+.+...+|..
T Consensus         9 G~~~~~~~d~~~A~~~~~kAa~~g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~------~a~~~~~~~a~~~l~~~   79 (265)
T d1ouva_           9 GAKSYKEKDFTQAKKYFEKACDLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYA------KACDLNYSNGCHLLGNL   79 (265)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHH------HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcchhHHHHHHhhc------ccccccccchhhccccc
Confidence            3444567899999999999987654   55667788777653211     1111110      01122234445555555


Q ss_pred             HHh----cCCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHHHH----c
Q psy4130          99 AMQ----QDKPEQAVIEYSKAIDCD----------------------------------NSNPVYYCNRAASNNK----L  136 (314)
Q Consensus        99 ~~~----~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~~~----~  136 (314)
                      +..    ..+.+.|...|+++....                                  +.+...++++|.++..    .
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  159 (265)
T d1ouva_          80 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP  159 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred             cccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcc
Confidence            543    345666666666665432                                  2345567777887775    4


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccc
Q psy4130         137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSS  208 (314)
Q Consensus       137 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~  208 (314)
                      .+...+..+++.+.+  +.++.+++++|.++..    ..++++|+.+|+++.+.  +++.+.++||.++..    ..+++
T Consensus       160 ~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~  235 (265)
T d1ouva_         160 KDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEK  235 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCST
T ss_pred             cccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHH
Confidence            567777777777775  4688999999999887    67899999999999887  468899999999885    33555


Q ss_pred             cCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130         209 SASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL  240 (314)
Q Consensus       209 ~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  240 (314)
                      +|.      ..+..++.  ..+.+....+..+
T Consensus       236 ~A~------~~~~kAa~--~g~~~A~~~l~~l  259 (265)
T d1ouva_         236 QAI------ENFKKGCK--LGAKGACDILKQL  259 (265)
T ss_dssp             THH------HHHHHHHH--HTCHHHHHHHHTC
T ss_pred             HHH------HHHHHHHH--CcCHHHHHHHHHH
Confidence            664      44444433  2344445555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=9.1e-08  Score=67.05  Aligned_cols=83  Identities=11%  Similarity=-0.010  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy4130         122 NPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYA-KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM  197 (314)
Q Consensus       122 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  197 (314)
                      ...+.++.|+++.+..   +..+|+..++.+++.+|.+. +.++.||..++++|+|++|+.+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3678888898888764   45689999999999888764 7899999999999999999999999999999999888777


Q ss_pred             HHHHHHh
Q psy4130         198 QAAMSNL  204 (314)
Q Consensus       198 ~~~~~~~  204 (314)
                      ..+..++
T Consensus       114 ~~Ie~~~  120 (124)
T d2pqrb1         114 SMVEDKI  120 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=4.2e-07  Score=63.59  Aligned_cols=79  Identities=10%  Similarity=0.013  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNP-VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG  164 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  164 (314)
                      ....+..|.++.+..   +.++|+..++.+++.+|.+. ++++++|.+|.++|+|++|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            457788888888664   56799999999999998764 79999999999999999999999999999999999877665


Q ss_pred             HHH
Q psy4130         165 LAY  167 (314)
Q Consensus       165 ~~~  167 (314)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.55  E-value=1.7e-06  Score=69.82  Aligned_cols=110  Identities=20%  Similarity=0.200  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130          88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRM  163 (314)
Q Consensus        88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l  163 (314)
                      +|.+++.+|..++..+++++|+++|+++.+.  .++.+++++|.+|..    ..++..|..+++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            3678999999999999999999999999875  578999999999987    67999999999998875  478888888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         164 GLAYTQ----MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       164 g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      |.++..    ..+.+.|...++++....+  ..+...++..+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~  118 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHD  118 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccC
Confidence            888765    5688899999999887644  4566666666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.48  E-value=2.4e-06  Score=61.47  Aligned_cols=114  Identities=16%  Similarity=0.101  Sum_probs=90.2

Q ss_pred             hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130          29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA  108 (314)
Q Consensus        29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  108 (314)
                      ...++++|+++|+++.+...   ....                                     +.++.  ....++++|
T Consensus         5 v~kd~~~A~~~~~kaa~~g~---~~a~-------------------------------------~~l~~--~~~~~~~~a   42 (133)
T d1klxa_           5 VKKDLKKAIQYYVKACELNE---MFGC-------------------------------------LSLVS--NSQINKQKL   42 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC---TTHH-------------------------------------HHHHT--CTTSCHHHH
T ss_pred             cccCHHHHHHHHHHHHHCCC---hhhh-------------------------------------hhhcc--ccccCHHHH
Confidence            35689999999999876643   2211                                     11221  224678899


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy4130         109 VIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALEAY  180 (314)
Q Consensus       109 ~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~  180 (314)
                      +.+|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+.+.||.+|..    ..++.+|+.+|
T Consensus        43 ~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~  118 (133)
T d1klxa_          43 FQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF  118 (133)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHH
Confidence            9999999875  688999999999986    56899999999999886  578999999999887    56899999999


Q ss_pred             HHHHhhCC
Q psy4130         181 TKAAELDP  188 (314)
Q Consensus       181 ~~al~~~p  188 (314)
                      +++.+...
T Consensus       119 ~~Aa~~G~  126 (133)
T d1klxa_         119 EKACRLGS  126 (133)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHCCC
Confidence            99998754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.15  E-value=1e-05  Score=57.91  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q psy4130         103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALE  178 (314)
Q Consensus       103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~  178 (314)
                      .|+++|+.+|+++.+..  ++.+.++++.  ....++++|+.+++++.+.  .++.+.+.||.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47899999999999874  5566677764  3467899999999999875  689999999999886    568999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130         179 AYTKAAELDPNDPLYANNMQAAMSN  203 (314)
Q Consensus       179 ~~~~al~~~p~~~~~~~~l~~~~~~  203 (314)
                      +|+++.+.  .++.+.+.|+.++..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999875  578899999999876

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.24  E-value=2.3  Score=34.13  Aligned_cols=118  Identities=5%  Similarity=0.001  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130          89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT  168 (314)
Q Consensus        89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  168 (314)
                      ...|......+....+..-|..+ ...   .-.++.-.......|...|.+++.+..++.++...+.+...+..++.++.
T Consensus        69 ~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya  144 (336)
T d1b89a_          69 TRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            44566666666666555443211 000   11233444455666677777888888888777777777777777777666


Q ss_pred             HcCCHHHHHHHHHHH-HhhCCC-------CHHHHHHHHHHHHHhcccccCC
Q psy4130         169 QMNDYKAALEAYTKA-AELDPN-------DPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       169 ~~g~~~~A~~~~~~a-l~~~p~-------~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      +.+ .++-.+.++.. ...++.       ....|..+..++.+.+++++|.
T Consensus       145 k~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~  194 (336)
T d1b89a_         145 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  194 (336)
T ss_dssp             TTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             HhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHH
Confidence            543 33333333321 111111       1123456667777777777664

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.51  E-value=5.7  Score=31.63  Aligned_cols=105  Identities=15%  Similarity=0.138  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130          92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN  171 (314)
Q Consensus        92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  171 (314)
                      +..+..++.+.++++.|.+...+.     .++..|.....++.......-|.- +...+.   .++.-...+-..+...|
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~---~~~d~l~~~v~~ye~~~  113 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-CGLHIV---VHADELEELINYYQDRG  113 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTT---TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhh---cCHHHHHHHHHHHHHcC
Confidence            556667888899999998888765     578889988888888777755422 111122   24445556677788899


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130         172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN  205 (314)
Q Consensus       172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  205 (314)
                      .+++.+..++.++...+.+...+..++.++.+.+
T Consensus       114 ~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_         114 YFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            9999999999999888889888888888887643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.29  E-value=0.8  Score=28.03  Aligned_cols=31  Identities=19%  Similarity=0.085  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130          87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAID  117 (314)
Q Consensus        87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  117 (314)
                      +.+..+-..+..+...|.|++||++++++..
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566788888999999999999998887764

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=6.2  Score=32.62  Aligned_cols=117  Identities=7%  Similarity=-0.085  Sum_probs=74.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASN----NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ  169 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  169 (314)
                      ..+.......+.+.|...+.......+.....+.......    ...+..+.+...+........+.......++. ...
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~  297 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALG  297 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHH
Confidence            3344444556788888888877766655554433333222    23456677777777776655554444444554 455


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130         170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS  211 (314)
Q Consensus       170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  211 (314)
                      .+++..+...+..........+...+.+|..+..+|+.++|.
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~  339 (450)
T d1qsaa1         298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK  339 (450)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHH
Confidence            678888888776543333345778899999999999988885

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=2.3  Score=35.46  Aligned_cols=91  Identities=9%  Similarity=-0.162  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130          94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY  173 (314)
Q Consensus        94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  173 (314)
                      .++..+...+..+.+...+............... ++......+++..+...+..........+...|.+|.++...|+.
T Consensus       257 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w-~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~  335 (450)
T d1qsaa1         257 IVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE  335 (450)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCchHHHHHHHHhhcccccchHHHHH-HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCCh
Confidence            3334444566778888887777665444333333 333456678999998888765433334578889999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4130         174 KAALEAYTKAAE  185 (314)
Q Consensus       174 ~~A~~~~~~al~  185 (314)
                      ++|...|..+..
T Consensus       336 ~~A~~~~~~~a~  347 (450)
T d1qsaa1         336 AEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhc
Confidence            999999998875